BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] (573 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040278|gb|ACT57074.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/573 (100%), Positives = 573/573 (100%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS Sbjct: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD Sbjct: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR Sbjct: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR Sbjct: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA Sbjct: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF Sbjct: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF Sbjct: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE Sbjct: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK Sbjct: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540 Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN Sbjct: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573 >gi|315121801|ref|YP_004062290.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495203|gb|ADR51802.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 571 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/571 (82%), Positives = 526/571 (92%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M IFE+IPQVIG+ALSERGYVNLT+VQ+A+L+P+LR+KD+LVSAQTGSGKTVAFGLALAS Sbjct: 1 MNIFEDIPQVIGDALSERGYVNLTAVQKAVLDPNLRDKDILVSAQTGSGKTVAFGLALAS 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 LL DRF PA+APLALAIAPTRELA+QVGRELEWLYAKTGVVV+VCIGGVS+HRERRD Sbjct: 61 NLLEGKDRFGPAAAPLALAIAPTRELAMQVGRELEWLYAKTGVVVSVCIGGVSLHRERRD 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 LQNG+HIVVGTPGRLCDHIRGKGLN+SHLKAV+LDEADEMLDLGFRDDIEFILDSSP+KR Sbjct: 121 LQNGSHIVVGTPGRLCDHIRGKGLNMSHLKAVILDEADEMLDLGFRDDIEFILDSSPEKR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 RMLMFSATIS AITTLAKNYQKDAVR+NIASENRQHSDIDYRA+LV+LSDRDNAIVN+LR Sbjct: 181 RMLMFSATISSAITTLAKNYQKDAVRINIASENRQHSDIDYRAILVSLSDRDNAIVNLLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ AKNAIVFCSTRASVSRFT+VL EHLFQVVALSGELSQQERSNALQMMRDGRARVCIA Sbjct: 241 YYEAKNAIVFCSTRASVSRFTRVLGEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLPDLE+VIHAELSSNPENLLHRSGRTGRAGRKG+SVFV+PQNMQRRAERLF Sbjct: 301 TDVAARGIDLPDLEIVIHAELSSNPENLLHRSGRTGRAGRKGVSVFVVPQNMQRRAERLF 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 +EANVS WE APSVEAI ERD+QR+L +PL +D IQGDEKK + LLAKHDPEKIAA F Sbjct: 361 KEANVSATWESAPSVEAIMERDSQRMLHNPLLIDPIQGDEKKSIGDLLAKHDPEKIAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 LR++RAG+C PE+I VSL +GRDRFRDDSR + GG SRDNF+ SSWFSLS+GS+QKAE Sbjct: 421 LRLNRAGMCPPEKIKAVSLSTGRDRFRDDSRDSRFGGASRDNFRNSSWFSLSIGSEQKAE 480 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540 ARWL+PMLCR SGI+R SIGAIRV PD TF+E++ GV+ LRR VKLDKGI +KYL GEK Sbjct: 481 ARWLIPMLCRKSGIDRHSIGAIRVLPDQTFIEIAESGVEFLRRPVKLDKGITIKYLNGEK 540 Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571 PDFRG +SS F+S+++ D KRFK+FKGAS Sbjct: 541 PDFRGGRSSSFRSRSNYDNTNKRFKKFKGAS 571 >gi|190891857|ref|YP_001978399.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652] gi|190697136|gb|ACE91221.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652] Length = 651 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/565 (58%), Positives = 419/565 (74%), Gaps = 8/565 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F + I +AL +RGY LT VQ+++L+PDL D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL ++RF A APLAL IAPTRELA+QV RELEWLY TG V+A C+GG+ + ERR Sbjct: 61 TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ AI LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A NAIVFCSTRA+V+ T F VVALSGEL+Q ERS+ALQ MRDGRARVCIA Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A +S WE PS E + ERD +R+L DP+F D+ Q +E+ +V LLA H EK+AA F Sbjct: 361 ENAGISAAWERPPSAEEVNERDDERLLADPIFHDAPQEEEQGLVQQLLASHGAEKLAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAF-KVGGGSRDNFKGSSWFSLSVGSKQK 478 LR++R APE++ V++ G R RD++ + G R++F S WFS+SVG KQ Sbjct: 421 LRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAEPYAPAQKGPREDFGPSVWFSVSVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---SADGV-DLLRRTVKLDKGIQLK 534 AE RWL+PMLCR+ G+ ++ IGAI++QP+ T+VE+ SADG + L L++GI++ Sbjct: 481 AEPRWLIPMLCRNGGVTKREIGAIKMQPEETYVEIAVASADGFQEALGPNKTLERGIRVT 540 Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558 L G PDF R + K+S+D Sbjct: 541 RLSG-MPDFSRAAAPKPYAGKSSRD 564 >gi|86357796|ref|YP_469688.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42] gi|86281898|gb|ABC90961.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42] Length = 651 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/565 (58%), Positives = 418/565 (73%), Gaps = 8/565 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F + I +AL +RGY LT VQ+A+L+P L D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQQAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL ++RF A APLAL IAPTRELA+QV RELEWLY TG V+A C+GG+ + ERR Sbjct: 61 TLLDGHERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ AI LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A NAIVFCSTRA+V+ T F VVALSGEL+Q ERS+ALQ MRDGRARVCIA Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A +S W PS E + ERD +R+L DP+F D+ Q +E+ +V LL+ H EK+AA F Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLLADPIFHDAPQEEEQGLVQQLLSSHGAEKLAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478 LR++R APE++ V++ G R RD++ +++ G R++F S WFS+SVG KQ Sbjct: 421 LRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAESYEPAQKGPREDFGPSVWFSVSVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---SADGV-DLLRRTVKLDKGIQLK 534 AE RWL+PMLCR+ + ++ IGAI++QP+ T+VE+ SADG + L L++GI++ Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIAVASADGFQEALGPNKTLERGIRVT 540 Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558 L G PDF R + K+S+D Sbjct: 541 RLSG-TPDFSRAAAPKPYAGKSSRD 564 >gi|327190854|gb|EGE57918.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512] Length = 651 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/565 (57%), Positives = 417/565 (73%), Gaps = 8/565 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F + I +AL +RGY LT VQ+++L+PDL D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL ++RF A APLAL IAPTRELA+QV RELEWLY TG V+A C+GG+ + ERR Sbjct: 61 TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ AI LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A NAIVFCSTRA+V+ T F VVALSGEL+Q ERS+ALQ MRDGRARVCIA Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A +S W PS E + ERD +R+L DP+F D+ Q +E+ +V LL+ H EK+AA F Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLLADPIFHDAPQEEEQGLVQQLLSSHGAEKLAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478 +R++R APE++ V++ G R RD++ +++ G R++F S WFS+SVG KQ Sbjct: 421 VRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAVSYEPAQKGPREDFGPSVWFSISVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534 AE RWL+PMLCR+ + ++ IGAI++QP+ T+VE++ D + + L++GI++ Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIAVASADSFQEALGPNKTLERGIRVT 540 Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558 L G PDF R + K+S+D Sbjct: 541 RLSG-TPDFSRAAAPKPYAGKSSRD 564 >gi|332716889|ref|YP_004444355.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3] gi|325063574|gb|ADY67264.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3] Length = 615 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/551 (59%), Positives = 409/551 (74%), Gaps = 7/551 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + I I +AL +RGY +LT VQ+A+L+P+L +KD LVSAQTGSGKTVAFG+ALA+ Sbjct: 1 MTDTQGIAPAIAQALEKRGYKDLTPVQKAMLSPELADKDALVSAQTGSGKTVAFGIALAT 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL+EN RF ASAPLALAIAPTRELA+QV RELEWLY GV +A C+GG+ + ERR Sbjct: 61 TLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRSERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHI+VGTPGRLCDHI+ L++S L+AVVLDEADEMLDLGFR+D+EFIL+ SP R Sbjct: 121 LERGAHIIVGTPGRLCDHIKRGALDLSSLRAVVLDEADEMLDLGFREDLEFILEESPDNR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I LA++YQK+AVR+ ASE +QH DI+YRA+LV SDR+NAI+N LR Sbjct: 181 RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVTGSDRENAIINALR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ A+NAIVFCSTRA+V+ T L F VVALSGEL+Q ER++ALQ MRDGRARVC+A Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP LELVIHA+L +N E LLHRSGRTGRAG+KG+S V+P N +R+AERL Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVNQRRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A VS W PSVE I ERD R+L DP +++ DE V LL +H EK+AA F Sbjct: 361 EGAKVSAAWVRPPSVEEIVERDGARLLADPALTEAVADDEHDFVKQLLEQHGAEKVAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD--NFKGSSWFSLSVGSKQK 478 +R++ AG APE+IT V+L + R RD + R+ +F S+WFSLSVG KQ Sbjct: 421 VRLYHAGRSAPEDITEVALDNTRKPRRDSFETPENDAPRRERSDFSDSAWFSLSVGRKQS 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLK 534 AE RWL+PMLCR I RQ IGAIR+Q TFVE++AD VD + + + L+KGI+LK Sbjct: 481 AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMMLEKGIRLK 540 Query: 535 YLGGEKPDFRG 545 L G KP+ G Sbjct: 541 ALEG-KPEMTG 550 >gi|209549420|ref|YP_002281337.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535176|gb|ACI55111.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 659 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/576 (56%), Positives = 419/576 (72%), Gaps = 11/576 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F + I +AL +RGY LT VQ+A+L+P L D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +RF A APLAL IAPTRELA+QV RELEWLY TG V+A C+GG+ + ERR Sbjct: 61 TLLEGGERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRS 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ AI LAK+YQ++AVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRNAVRISTAAEAKQHVDIEYRALMVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A NAIVFCSTRA+V+ T F VVALSGEL+Q ER++ALQ MRDGRARVCIA Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERTHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A +S W PS E + ERD +R+L DP+F ++ Q +E+ +V LL+ H EK+AA F Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVGG-GSRDNFKGSSWFSLSVGSKQK 478 LR++R APE++ V++ G R RD++ F+ G R++F S WFS+SVG KQ Sbjct: 421 LRLYRTNHSAPEDLLEVTVQDGGSRKRRDNAEPFEPAQRGPREDFGASVWFSVSVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534 AE RWL+PMLCR+ + ++ IGAI++QP+ TFVE++A + + L++GI++ Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540 Query: 535 YLGGEKPDFRGYKS----SGFKSKNSQDGATKRFKR 566 L G PDF S +G S++ + G T R +R Sbjct: 541 KLSG-TPDFSRAPSPKPYAGKPSRDERPGDTFREER 575 >gi|15890807|ref|NP_356479.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58] gi|15159093|gb|AAK89264.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58] Length = 615 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/568 (58%), Positives = 414/568 (72%), Gaps = 7/568 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + I I +AL +RGY +LT VQ+A+L P+L KD LVSAQTGSGKTVAFG+ALA+ Sbjct: 1 MTDTQGIAPAIAQALEKRGYKDLTPVQQAMLAPELANKDALVSAQTGSGKTVAFGIALAT 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL+EN RF ASAPLALAIAPTRELA+QV RELEWLY GV +A C+GG+ + ERR Sbjct: 61 TLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRNERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHI+ L++S ++AVVLDEADEMLDLGFR+D+EFIL+ SP R Sbjct: 121 LERGAHIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I LA++YQK+AVR+ ASE +QH DI+YRA+LV+ SDR+NAI+N LR Sbjct: 181 RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINALR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ A+NAIVFCSTRA+V+ T L F VVALSGEL+Q ER++ALQ MRDGRARVC+A Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP LELVIHA+L +N E LLHRSGRTGRAG+KG+S V+P + +R+AERL Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVSQRRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A VS W PSVE I ERD R+L DP +++ DE+ V+ LL +H EK+AA F Sbjct: 361 EGAKVSAAWVRPPSVEEIVERDGARLLADPTLSEAVTDDERDFVNKLLEQHGAEKVAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD--NFKGSSWFSLSVGSKQK 478 +R++ +G APE+I V+L + R RD + RD +F S+WFSLSVG KQ Sbjct: 421 VRLYHSGRSAPEDIFEVALDNTRKPRRDSFETTENNAPRRDRSDFSDSAWFSLSVGRKQS 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLK 534 AE RWL+PMLCR I RQ IGAIR+Q TFVE++AD VD + + + L+KGI+LK Sbjct: 481 AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMMLEKGIRLK 540 Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATK 562 + G KP+ G + +Q TK Sbjct: 541 QMEG-KPEMTGNAREDTRPATAQRKFTK 567 >gi|241204745|ref|YP_002975841.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858635|gb|ACS56302.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 651 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/565 (56%), Positives = 414/565 (73%), Gaps = 8/565 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F + I +AL +RGY LT VQ+A+L+P L D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +RF A+APLAL IAPTRELA+QV RELEWL+ TG V+ C+GG+ + ERR Sbjct: 61 TLLEGRERFGNAAAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRS 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILD++P +R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ AI LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A NAIVFCSTRA+V+ T F VVALSGEL+Q ER++ALQ MRDGRARVCIA Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A +S W PS E + ERD +R+L DP+F ++ Q +E+ +V LLA H EK+AA F Sbjct: 361 ENAGISAAWARPPSAEEVSERDDERLLADPIFNETPQEEEQGLVQQLLASHGAEKLAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478 LR++R APE++ V++ R+R RD++ ++ G R++F S WFS+SVG KQ Sbjct: 421 LRLYRTNHSAPEDLIEVTVQDDRNRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534 AE RWL+PMLCR+ + ++ IGAI++QP+ TFVE++A + + L++GI++ Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540 Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558 L G PDF R + K S+D Sbjct: 541 RLSG-TPDFSRAPAPKPYAGKPSRD 564 >gi|116252251|ref|YP_768089.1| cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD) [Rhizobium leguminosarum bv. viciae 3841] gi|115256899|emb|CAK07993.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD) [Rhizobium leguminosarum bv. viciae 3841] Length = 651 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/565 (56%), Positives = 412/565 (72%), Gaps = 8/565 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F + I +AL +RGY LT VQ+A+L+P L D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +RF A APLAL IAPTRELA+QV RELEWL+ TG V+ C+GG+ + ERR Sbjct: 61 TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRS 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILD++P +R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ AI LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A NAIVFCSTRA+V+ T F VVALSGEL+Q ER++ALQ MRDGRARVCIA Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A +S W PS E + ERD +R+L DP+F ++ Q +E+ +V LLA H EK+AA F Sbjct: 361 ENAGISAAWARPPSAEEVSERDDERLLADPIFNETPQEEEQGLVQQLLASHGAEKLAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478 LR++R APE++ +++ R R RD++ ++ G R++F S WFS+SVG KQ Sbjct: 421 LRLYRTNHSAPEDLIEITVQDDRSRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534 AE RWL+PMLCR+ + ++ IGAI++QP+ TFVE++A + + L++GI++ Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540 Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558 L G PDF R + K S+D Sbjct: 541 RLSG-TPDFSRAPAPKPYAGKPSRD 564 >gi|227820653|ref|YP_002824623.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium fredii NGR234] gi|227339652|gb|ACP23870.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium fredii NGR234] Length = 633 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/558 (57%), Positives = 404/558 (72%), Gaps = 15/558 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M FE I I EAL++RGY LT VQ+A+L+P L D LVSAQTGSGKTVAFGLAL Sbjct: 1 MTEFEGIAPAIAEALAKRGYNTLTPVQQAMLDPALEGADALVSAQTGSGKTVAFGLALGP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +F APLAL IAPTRELA+QV RELEWLY TG +A C+GG+ + ERR Sbjct: 61 TLLGPARQFDSPGAPLALVIAPTRELALQVKRELEWLYEITGATIASCVGGMDIRSERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR L+IS L+A+VLDEADEMLDLGFR+D+EFIL++SP +R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRDSLDISALRAIVLDEADEMLDLGFREDLEFILEASPTER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I TLAKNYQ+DAVR+ +ASE +QH DI+YR++LVA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPRSIATLAKNYQRDAVRIGVASEQKQHGDIEYRSLLVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A+NAIVFCSTRA+V+ T F VVALSGELSQ ER++ALQ MRDGRARVCIA Sbjct: 241 YYDARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERNHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP LELVIHA+L +NP+ LLHRSGRTGRAG+KG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNPDTLLHRSGRTGRAGQKGVSALIVPVNQRRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A ++ W PS E + RD +R++ D F + ++ DE+ +V L+ +H EK+AA F Sbjct: 361 DGARITATWAKPPSAEDVTGRDDERLIADAAFDEPLRDDEQTIVQALIDRHGAEKLAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK--VGGGSRDNFKGSSWFSLSVGSKQK 478 +R R+ APEE++ V L R + R D+ AF R +F WFSLSVG KQ Sbjct: 421 VRQFRSSRSAPEELSDVPLFDDRKKARRDAPAFTGDSAAAPRADFTDGQWFSLSVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534 AE RWL+PMLCR ++++ IGAIR+QP+ T+VE++ADG + + L+KGI++K Sbjct: 481 AEPRWLIPMLCRHGKLSKRDIGAIRMQPEETYVELTADGAERFLTAIGPNRTLEKGIRVK 540 Query: 535 YLGG---------EKPDF 543 L G +KP+F Sbjct: 541 TLPGAPDGSRPRDDKPEF 558 >gi|307317997|ref|ZP_07597434.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83] gi|306896399|gb|EFN27148.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83] Length = 630 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 323/587 (55%), Positives = 411/587 (70%), Gaps = 22/587 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F I I EAL++RGY LT VQ+A+L+P L D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFAGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TL+ +F+ A APLAL IAPTRELA+QV REL+WLY G +A C+GG+ + ERR Sbjct: 61 TLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRT 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR L+IS LKAVVLDEADEMLDLGFR+D+EFIL++SP R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I TLAKNYQ+DAVR+ + SE +QH DI+YR++LVA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPRSIATLAKNYQRDAVRIGVTSEQKQHGDIEYRSLLVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ A+NAIVFCSTRA+V+ T F VVALSGELSQ ER++ALQ MRDGRARVCIA Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG+KG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A ++ W PS + + RD +RI DP ++ + DE+ +V+ L++++ EKIAA F Sbjct: 361 ENARITAAWAKPPSADEVARRDDERIAADPALAEAPREDEQAIVETLISRYGAEKIAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG--GSRDNFKGSSWFSLSVGSKQK 478 +R R+ APEE+ V++ R + R D AF R +F WFSLSVG KQ Sbjct: 421 VRQFRSNRSAPEELVDVAVYDDRRKPRRDGPAFTGDSEPAPRADFADGQWFSLSVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534 AE RWL+PMLCR ++++ IGAIR+QP+ T+VE++ADG + L + L+KGI++K Sbjct: 481 AEPRWLIPMLCRYGKLSKRDIGAIRMQPEETYVEMTADGAERLLAAIGPNRMLEKGIRVK 540 Query: 535 YLGG---------EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572 L G +KPDF K + A + K FK K Sbjct: 541 TLPGAPDSSRPRQDKPDFE-------KKRPPATAAEREHKDFKPKRK 580 >gi|222084927|ref|YP_002543456.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84] gi|221722375|gb|ACM25531.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84] Length = 636 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 323/574 (56%), Positives = 406/574 (70%), Gaps = 20/574 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M FE I I +AL++RGY LT VQ+++L+PDL KD LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFEGIVPAIAQALAKRGYETLTPVQKSMLDPDLAGKDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +RF A PLALAIAPTRELA+QV RELEWLY TG + C+GG+ + E+R Sbjct: 61 TLLDGAERFGRAGTPLALAIAPTRELALQVQRELEWLYELTGATIVSCVGGMDMRTEKRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR L+IS LKAVVLDEADEMLDLGFR+D+EFIL++SP +R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRNSLDISKLKAVVLDEADEMLDLGFREDLEFILETSPTER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I LA+NYQ+DAVR+ A+E +QH DIDYRA+ V SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPRSIAKLAENYQRDAVRIASATEAKQHVDIDYRALTVVPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A+NAIVFCSTRA+V+ T F VVALSGELSQ ER++ALQ MRDGRARVCIA Sbjct: 241 YYEAQNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQSERTHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LVIHA++ +NPE LLHRSGRTGRAGRKG+S ++P + +RR ERL Sbjct: 301 TDVAARGIDLPGLDLVIHADIPTNPETLLHRSGRTGRAGRKGVSALIVPLSGRRRTERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + W PS + + +RD +R+L DP+F + DE+ +V LL H E++AA F Sbjct: 361 EAARIRATWAKPPSADEVSQRDDERLLADPIFSAPLGEDEQSLVQQLLRTHGAEQVAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV-------GGGSRDNFKGSSWFSLSV 473 LR +RAG APE++ V R + R D F V G R++F W SLSV Sbjct: 421 LRQYRAGHSAPEDLQDVPAEGERKKPRRDD--FPVTRYDEAPAGAGRNDFTDGVWVSLSV 478 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDK 529 G KQ AE RWL+PMLCR+ + ++ IGAI++QP+ TFVE SA+G + + L++ Sbjct: 479 GRKQNAEPRWLIPMLCRNGNLTKRDIGAIKMQPEETFVEFSAEGAERFLTAIGPDKTLER 538 Query: 530 GIQLKYLGGEKPDFR------GYKSSGFKSKNSQ 557 GI++K L G PDF GY F K+++ Sbjct: 539 GIRVKPLDG-IPDFSQAKREGGYGKKPFAEKSAR 571 >gi|15964184|ref|NP_384537.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti 1021] gi|307301327|ref|ZP_07581089.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti BL225C] gi|15073360|emb|CAC41868.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021] gi|306903783|gb|EFN34370.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti BL225C] Length = 630 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 315/558 (56%), Positives = 402/558 (72%), Gaps = 15/558 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F I I EAL++RGY LT VQ+A+L+P L D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFAGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TL+ +F+ A APLAL IAPTRELA+QV REL+WLY G +A C+GG+ + ERR Sbjct: 61 TLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRT 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR L+IS LKAVVLDEADEMLDLGFR+D+EFIL++SP R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I TLAK+YQ+DAVR+ + SE +QH DI+YR++LVA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPRSIATLAKSYQRDAVRIGVTSEQKQHGDIEYRSLLVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ A+NAIVFCSTRA+V+ T F VVALSGELSQ ER++ALQ MRDGRARVCIA Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG+KG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A ++ W P + + RD +RI DP ++ + DE+ +V+ L++++ EKIAA F Sbjct: 361 ENARITAAWAKPPLADEVARRDDERIAADPALAEAPREDEQAIVETLISRYGAEKIAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG--GSRDNFKGSSWFSLSVGSKQK 478 +R R+ APEE+ V++ R + R D AF R +F WFSLSVG KQ Sbjct: 421 VRQFRSNRSAPEELVDVAVYDDRRKPRRDGPAFTGDSEPAPRADFADGQWFSLSVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534 AE RWL+PMLCR ++++ IGAIR+QP+ T+VE++ADG + L + L+KGI++K Sbjct: 481 AEPRWLIPMLCRYGKLSKRDIGAIRMQPEETYVEMTADGAERLLAAIGPNRMLEKGIRVK 540 Query: 535 YLGG---------EKPDF 543 L G +KPDF Sbjct: 541 TLPGAPDSSRPRQDKPDF 558 >gi|150395295|ref|YP_001325762.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium medicae WSM419] gi|150026810|gb|ABR58927.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae WSM419] Length = 626 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 317/578 (54%), Positives = 405/578 (70%), Gaps = 15/578 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M I I EAL++RGY LT VQ+A+L+P L D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTELAGIAPAIAEALAKRGYETLTPVQQAMLDPALGTADALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TL+ +F+ APLAL IAPTRELA+QV RELEWLY G +A C+GG+ + ERR Sbjct: 61 TLIGSARQFAQPGAPLALVIAPTRELALQVKRELEWLYEIAGATIASCVGGMDMRSERRM 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L GAHIVVGTPGRLCDHIR L+IS LKAVVLDEADEMLDLGFR+D+EFIL+++P R Sbjct: 121 LDRGAHIVVGTPGRLCDHIRRGSLDISELKAVVLDEADEMLDLGFREDLEFILEAAPADR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I TLAKNYQ+DAVR+ + SE +QH DI+YRA+LVA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPRSIATLAKNYQRDAVRIGVTSEQKQHGDIEYRALLVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ A+NAIVFCSTRA+V+ T F VVALSGELSQ ER++ALQ MRDGRARVCIA Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG+KG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A ++ W PS + + RD +RI DP + + DE+ +V+ L+ + EKIAA F Sbjct: 361 ENARITAAWAKPPSADEVALRDDERIAADPALAEPPREDEQAIVETLIGLYGAEKIAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK--VGGGSRDNFKGSSWFSLSVGSKQK 478 +R R+ APEE+ V++ R + R +S AF R +F WFSLSVG KQ Sbjct: 421 VRQFRSNRSAPEELAEVAVYDDRKKARRESPAFSGDSDPAPRADFADGRWFSLSVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534 AE RWL+PMLCR ++++ IGAIR+QP+ T+VE++ADG + L + L++GI++K Sbjct: 481 AEPRWLIPMLCRHGKLSKRDIGAIRMQPEETYVEMTADGAERLLTAIGPDRMLERGIRVK 540 Query: 535 YLGG---------EKPDFRGYKSSGFKSKNSQDGATKR 563 L G ++PDF + + + +D KR Sbjct: 541 ALPGAPDVSRSRQDRPDFEKKRPAPASEREQKDFKPKR 578 >gi|13473704|ref|NP_105272.1| DEAD-box protein, ATP-independent RNA helicase [Mesorhizobium loti MAFF303099] gi|14024455|dbj|BAB51058.1| DEAD-BOX protein, ATP-independent RNA helicase [Mesorhizobium loti MAFF303099] Length = 620 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 314/556 (56%), Positives = 402/556 (72%), Gaps = 11/556 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F I + +AL +RGY LT VQ+A+L +L D LVSAQTGSGKTVAFGLA+A Sbjct: 1 MSNFVGIVPALAQALEKRGYSELTPVQKAVL--ELGSADALVSAQTGSGKTVAFGLAMAP 58 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +RF A APLALA+APTRELA+QV RELEWLY TG VA C+GG+ + ERR Sbjct: 59 TLLDGAERFGAAMAPLALAVAPTRELALQVTRELEWLYEPTGATVASCVGGMDMRTERRA 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRL DHI L++S LKAVVLDEADEMLDLGFR+D+EFILD++P +R Sbjct: 119 LERGAHIVVGTPGRLRDHITRNSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAER 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I TLA+ YQ+DAVR++ A E +QH DI+YRA+ VA +DR+NAI+N+LR Sbjct: 179 RTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHLDIEYRALNVAQADRENAIINVLR 238 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ AKNA+VFC+TRA+V+ T F VVALSGELSQ ERS+ALQ MRDGRA+VCIA Sbjct: 239 FYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA 298 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+LELVIHA+L +NPE LLHRSGRTGRAGRKG+S ++P + +RR ERL Sbjct: 299 TDVAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPGSARRRTERLL 358 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 + A + W PS + + RD +RIL DP F + ++ DE+ +D LLAKH E++AA F Sbjct: 359 QNAGLKATWASPPSADDVIRRDDERILADPAFDEPVKDDERAFIDALLAKHGAEQVAAAF 418 Query: 421 LRIHRAGLCAPEEITPVS-LVSGRDRFRDDSRAFKVGGGS-RDNFKGSSWFSLSVGSKQK 478 +R RA APE++ V+ R+R + A + S RD+F S WFSLSVG +Q Sbjct: 419 VRQCRASRSAPEDLIDVAPFTPSRERPAGEKFAQRDEAPSRRDDFGASVWFSLSVGRRQN 478 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ----LK 534 AE RWL+PMLCR+ I+++ IGAI++QP+ TFV+++AD D + D+ +Q +K Sbjct: 479 AEPRWLIPMLCRTGSISKREIGAIKMQPEETFVQIAADWADRFLAAIGPDRKLQGNILVK 538 Query: 535 YLGGEKPDFR--GYKS 548 L G PD GY++ Sbjct: 539 RLDG-TPDLSRAGYQA 553 >gi|163758459|ref|ZP_02165547.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43] gi|162284748|gb|EDQ35031.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43] Length = 729 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 305/542 (56%), Positives = 381/542 (70%), Gaps = 19/542 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I I AL++RGY LT VQE++L P+LR+ D+LVSAQTGSGKTVAFG++LA TL+ E Sbjct: 6 DIHSAIDRALTKRGYDALTPVQESMLAPELRDADLLVSAQTGSGKTVAFGISLAPTLMGE 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 DR A PLA+ IAPTRELA+QV REL WLYA+ G +A C+GG+++ ERR LQ GA Sbjct: 66 EDRLPRAETPLAIVIAPTRELALQVERELAWLYAEAGAQIATCVGGMNMMTERRTLQRGA 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL DHI LN++ ++AVVLDEADEMLDLGFRDD+EFILD++P +RR LMF Sbjct: 126 HIVVGTPGRLRDHIERGSLNLTSIRAVVLDEADEMLDLGFRDDLEFILDAAPDQRRTLMF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK YQ AVRV A E +QH DI+YRA+ VA +DR+NA++N+LR++ AK Sbjct: 186 SATVPSGIANLAKRYQTKAVRVTTAGEQKQHLDIEYRALSVAPNDRENAVINVLRFYDAK 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 NAIVFCSTRA+V+ T + F VVALSGELSQ ERS+ALQ +RDGRA+VC+ATDVAA Sbjct: 246 NAIVFCSTRATVNHLTARFSNRGFAVVALSGELSQNERSHALQALRDGRAKVCVATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+DLPDLELVIHA+L +PE LLHRSGRTGRAGRKG+S ++P N +RR ERL +A + Sbjct: 306 RGLDLPDLELVIHADLPKSPETLLHRSGRTGRAGRKGVSAMIVPYNARRRTERLLSDARI 365 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 S W PS E I RD +R+L DP F I DE MV LL +H PEK+AA +R HR Sbjct: 366 SAAWARPPSAEEILARDDERLLADPHFEAEIGEDEADMVKALLERHGPEKVAAALMRAHR 425 Query: 426 AGLCAPEEIT---PVSLVSGRDRFRDDSRAFKVGGGSRDN--FKGSSWFSLSVGSKQKAE 480 AG APEE+ PV+ G R RD+ + + WFSLS+G KQ AE Sbjct: 426 AGRSAPEELIENGPVTAPGGTYPER----------APRDHVALQNAVWFSLSLGRKQSAE 475 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL 536 RWL+PMLCR+ I + IG+IR+ T VE+S D ++ K++K I + L Sbjct: 476 PRWLLPMLCRAGHITKAEIGSIRILDLETHVEISGDSAAKFEASIGPSRKIEKNITVTRL 535 Query: 537 GG 538 G Sbjct: 536 EG 537 >gi|222149119|ref|YP_002550076.1| cold-shock dead-box protein A [Agrobacterium vitis S4] gi|221736104|gb|ACM37067.1| cold-shock dead-box protein A [Agrobacterium vitis S4] Length = 673 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 299/547 (54%), Positives = 386/547 (70%), Gaps = 5/547 (0%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M ++ I I EAL +RGY LT VQ+A+++ DL +D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTDYDGIVPAIAEALRKRGYATLTPVQQAMIDTDLEGRDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +RF A PLAL IAPTRELA+QV RELEWLY TG + A C+GG+ + ERR Sbjct: 61 TLLGSENRFGRAVKPLALCIAPTRELALQVQRELEWLYENTGAIFATCVGGMDIRNERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHI+VGTPGRL DHI + L++S L+AVV+DEADEMLDLGFR+D+EFIL SP +R Sbjct: 121 LERGAHIIVGTPGRLRDHITRRALDLSGLRAVVMDEADEMLDLGFREDLEFILKESPDER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I LA++YQ+DA R+ SE +QH DI+YRA+L +D++NAI+N LR Sbjct: 181 RTLMFSATVPRSIADLARSYQRDAKRIETVSEQKQHIDIEYRAMLTVPADKENAIINALR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ A+NAIVFCSTRA+V+ T L F VVALSGELSQ ER++ALQ MRDGRARVC+A Sbjct: 241 FYEARNAIVFCSTRANVNHLTARLHNRGFSVVALSGELSQSERTHALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP LELVIHA+L +N E LLHRSGRTGRAG KG+S ++P + +R+AER+ Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGNKGVSALIVPMSQRRKAERIL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 ANV W PS + + RD +R+L DP+F ++I +E + LL H +KI A + Sbjct: 361 GGANVQAAWVKPPSADEVIARDDERLLADPVFSEAISEEEAATIARLLEAHGADKITAAY 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 LR +R+ APE++ V + + R R +D+ R F S WFSLSVG +Q AE Sbjct: 421 LRAYRSTRSAPEDLMEVKIQAERPRRENDTYEPNTPSRPRSEFGPSVWFSLSVGRRQSAE 480 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYL 536 RWL+PMLCR+ I + IGAI++QP+ TFVE++ ++ L L++GI +K L Sbjct: 481 PRWLIPMLCRNGNITKNEIGAIKMQPEETFVEIAQANLEQFLTALGPNKTLERGIIVKQL 540 Query: 537 GGEKPDF 543 G PDF Sbjct: 541 PG-MPDF 546 >gi|260469782|ref|ZP_05813939.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum WSM2075] gi|259028428|gb|EEW29747.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum WSM2075] Length = 620 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 313/555 (56%), Positives = 408/555 (73%), Gaps = 11/555 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M FE + + +AL +RGY +LT VQ+A+L +L + D LVSAQTGSGKTVAFGLA+A Sbjct: 1 MSNFEALVPALAKALEKRGYSDLTPVQKAVL--ELGQADALVSAQTGSGKTVAFGLAMAP 58 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL DRF+PA+APLALA+APTRELA+QV RELEWLY TG VA C+GG+ + ERR Sbjct: 59 TLLDGADRFAPATAPLALAVAPTRELALQVTRELEWLYEMTGATVASCVGGMDMRTERRA 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRL DHI L++S LKAVVLDEADEMLDLGFR+D+EFILD++P +R Sbjct: 119 LERGAHIVVGTPGRLRDHITRNSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAER 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I TLA+ YQ+DAVR++ A E +QH DI+YRA+ VA +DR+NAI+N+LR Sbjct: 179 RTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHLDIEYRALSVAPADRENAIINVLR 238 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ AKNA+VFC+TRA+V+ T F VVALSGELSQ ERS+ALQ MRDGRA+VCIA Sbjct: 239 FYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA 298 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+LELVIHA+L +NPE LLHRSGRTGRAGRKG+S ++P + +RR ERL Sbjct: 299 TDVAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPGSARRRTERLL 358 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 + A ++ W PS + + RD +RIL DP F + ++ DE+ +D LL++H E++AA F Sbjct: 359 QSAKLTATWASPPSADDVMRRDDERILADPAFDEPVKDDERAFIDALLSQHGAEQVAAAF 418 Query: 421 LRIHRAGLCAPEEITPVS-LVSGRDRFRDDSRAFKVGGGS-RDNFKGSSWFSLSVGSKQK 478 +R RA APE++ V+ R+R + A + S RD+F S WFSLS+G +Q Sbjct: 419 VRQCRASRSAPEDLMDVAPFTPSRERPAGEGFARRDEAPSRRDDFGASVWFSLSIGRRQN 478 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ----LK 534 AE RWL+PMLCR+ I+++ IGAI++QP+ TFV+++AD D + D+ +Q +K Sbjct: 479 AEPRWLIPMLCRTGSISKREIGAIKMQPEETFVQIAADWADRFLTAIGPDRKLQGNIVVK 538 Query: 535 YLGGEKPDFR--GYK 547 L G PD GY+ Sbjct: 539 RLDG-TPDLSRAGYQ 552 >gi|319780673|ref|YP_004140149.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166561|gb|ADV10099.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 624 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 312/555 (56%), Positives = 404/555 (72%), Gaps = 9/555 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M FE + + AL +RGY LT VQ+A++ P+L E D LVSAQTGSGKTVAFGLALA Sbjct: 1 MSNFEALVPALARALEKRGYSELTPVQKAVVAPELGEADALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +RF A+APLALA+APTRELA+QV RELEWLY TG VA C+GG+ + ERR Sbjct: 61 TLLEGAERFGYAAAPLALAVAPTRELALQVTRELEWLYELTGATVASCVGGMDMRSERRV 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRL DHI + L++S LKAVVLDEADEMLDLGFR+D+EFILD++P +R Sbjct: 121 LERGAHIVVGTPGRLRDHITRRSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ +I TLA+ YQ+DAVR++ A E +QH DI+YRA+ VA DR+NAI+N+LR Sbjct: 181 RTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHLDIEYRALSVAQPDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ AKNA+VFC+TRA+V+ T F VVALSGELSQ ERS+ALQ MRDGRA+VCIA Sbjct: 241 YYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+LELVIHA+L +NPE LLHRSGRTGRAGRKG+S ++P + ++R ERL Sbjct: 301 TDVAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPNSARKRTERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 + A + W PS + + RD +RIL DP F + ++ DE+ +D LLA+H E++AA F Sbjct: 361 QNAGLKATWASPPSADDVMRRDDERILADPAFDEPVKEDERSFIDALLARHGAEQVAAAF 420 Query: 421 LRIHRAGLCAPEEITPVS-LVSGRDRFRDDSRAFKVGGGS-RDNFKGSSWFSLSVGSKQK 478 +R RA APE++ ++ R+R + A + S RD+F S WFSLS+G +Q Sbjct: 421 VRQCRASRSAPEDLMEIAPFTPSRERPAGEGFARRDEAPSRRDDFGDSVWFSLSIGRRQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ----LK 534 AE RWL+PMLCR+ I+++ IGAI++QP+ T+V+++AD D + D+ +Q +K Sbjct: 481 AEPRWLIPMLCRTGSISKREIGAIKMQPEETYVQIAADWADRFLAAIGPDRKLQGNILVK 540 Query: 535 YLGGEKPDFR--GYK 547 L G PD GY+ Sbjct: 541 RLDG-TPDLSRAGYQ 554 >gi|254460192|ref|ZP_05073608.1| ATP-dependent RNA helicase [Rhodobacterales bacterium HTCC2083] gi|206676781|gb|EDZ41268.1| ATP-dependent RNA helicase [Rhodobacteraceae bacterium HTCC2083] Length = 721 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 301/548 (54%), Positives = 388/548 (70%), Gaps = 14/548 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M FEN+ + EAL +GY LT VQ + P+ ++D+LVSAQTGSGKTVAFGLA+A Sbjct: 12 MTDFENVIPTLNEALKAKGYETLTPVQVEVSQPEFLDQDLLVSAQTGSGKTVAFGLAIAP 71 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L EN RF A+ PLAL IAPTRELA+QV RE +WL+A TGVVVA +GG+ ERR Sbjct: 72 TILEENGRFERAATPLALVIAPTRELALQVKREFDWLFAPTGVVVASTVGGMDSRTERRA 131 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVV TPGRL DHI +++S L+AVVLDEADEMLD+GF +D+E+ILD++P +R Sbjct: 132 LERGAHIVVATPGRLRDHIMRGAIDLSALRAVVLDEADEMLDMGFSEDLEYILDATPSER 191 Query: 181 RMLMFSATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R LMFSAT+ I LA+ YQ KD RV E QH+DI YRA+ VA SD +NAI+N L Sbjct: 192 RTLMFSATVPRGIAKLAQKYQRKDTKRVETIGEGPQHADITYRAMTVAPSDTENAIINTL 251 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 RY+ A+NAIVF +TRA V+R T + F VV+LSGELSQ ER++ALQ MRDGRARVC+ Sbjct: 252 RYYEAQNAIVFANTRAMVARLTARFSNRGFSVVSLSGELSQNERTHALQAMRDGRARVCV 311 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARGIDLP+LELVIHA+L SN E LLHRSGRTGRAGRKG+S ++P + +AERL Sbjct: 312 ATDVAARGIDLPNLELVIHADLPSNGETLLHRSGRTGRAGRKGISALIVPGRQKSKAERL 371 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 R A ++ W APS + + RD +R+L DP + +++ DE+ LL+++ PE+IAA Sbjct: 372 LRFAKLTAEWSNAPSADDVNARDEERMLNDPSWSEALSEDEQSFAGKLLSQYKPEQIAAA 431 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 FLR+HR+ APE++ V+ G+ R + RA + +F SSWFSLS+G K KA Sbjct: 432 FLRLHRSKHSAPEQLGEVTDTRGKREPR-EPRAPR-------DFGPSSWFSLSLGRKHKA 483 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKY 535 E RWL+PMLCR+ I++ IGAIRVQ TFVEV V+ +++ + L++G +L Sbjct: 484 EPRWLLPMLCRNGNISKDDIGAIRVQYQETFVEVQTSAVERMKKELGEGLDLEQGAKLTE 543 Query: 536 LGGEKPDF 543 L G KPDF Sbjct: 544 LPG-KPDF 550 >gi|89070055|ref|ZP_01157386.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicola granulosus HTCC2516] gi|89044392|gb|EAR50530.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicola granulosus HTCC2516] Length = 680 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 300/539 (55%), Positives = 385/539 (71%), Gaps = 19/539 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + EALSERGY LT+VQEA+ +P L + D+LVSAQTGSGKTV FGLA+A TLLA +R Sbjct: 3 HTLSEALSERGYETLTAVQEAVTDPALEQADLLVSAQTGSGKTVGFGLAIAPTLLAGEER 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 PA+APLAL +APTRELA QV RELEWLYA+TG V C+GG+ + ERR L+ GAHIV Sbjct: 63 MGPAAAPLALIVAPTRELAFQVRRELEWLYARTGAQVTSCVGGMDMRSERRALERGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL DHI+ L + ++AVVLDEADEMLDLGFR+D+EF+L ++P+ RR LMFSAT Sbjct: 123 VGTPGRLRDHIQRGSLELESIRAVVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P I TLAK+YQ+DAVRV+ S +QH+DI Y+AV VA D +NAI+NILR+H A+NAI Sbjct: 183 VPPMIATLAKHYQRDAVRVSTQSTGKQHADIAYQAVKVAQQDAENAIINILRFHDAENAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF +TRA V+R T + F VV+LSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI Sbjct: 243 VFANTRAMVARLTARFSNRGFAVVSLSGELSQNERTHALQAMRDGRARVCVATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+L+LV+HAEL +N E LLHRSGRTGRAGRKG+S V+P M +RAERL + A +S Sbjct: 303 DLPNLDLVVHAELPTNVEGLLHRSGRTGRAGRKGISALVVPPKMVKRAERLLKWAKISAE 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W APS E I RD +R+L DP++ + I ++ + L A H PE+IAA +LR++R Sbjct: 363 WITAPSAEDILARDEERLLADPVWSEEIAAEDAEFAARLAAAHAPERIAAAYLRLYRERH 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE++P K R F S W +LSVG +Q+AE RWL+P+L Sbjct: 423 SAPEELSPPDA--------------KPPAKERKPFGPSRWIALSVGREQRAEPRWLLPLL 468 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLGGEKPDF 543 CR+ G+++ +IGAIRV D ++VE+S V + +L+ GI+ + L G PD+ Sbjct: 469 CRAGGLDKSAIGAIRVVKDESYVELSEPAVAGFFAEIGEAGQLEDGIRARLLEG-VPDY 526 >gi|114763012|ref|ZP_01442442.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Pelagibaca bermudensis HTCC2601] gi|114544336|gb|EAU47344.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseovarius sp. HTCC2601] Length = 727 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 293/506 (57%), Positives = 365/506 (72%), Gaps = 11/506 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + +AL+ERGY LT VQEA+ NPDL+ D+LVSAQTGSGKTV FGLA+A TLL E Sbjct: 3 QTLSDALAERGYDTLTPVQEAVTNPDLQTSDLLVSAQTGSGKTVGFGLAIAPTLLDEAGM 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AS PLAL +APTRELA QV RELEWLYAK G V C+GG+ + ERR L+ GAHIV Sbjct: 63 LGEASLPLALIVAPTRELAFQVKRELEWLYAKAGARVVSCVGGMDMRDERRALERGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL DHI+ ++S L+A+VLDEADEMLDLGFR+D+EF+L +P++RR L+FSAT Sbjct: 123 VGTPGRLVDHIQRGSFDMSALRAIVLDEADEMLDLGFREDLEFMLGEAPEERRTLLFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P I TLA+ YQ+DAVRV SE QH+DI Y+A+ VA D +NAI+N+LRYH A+NAI Sbjct: 183 VPPMIATLAQLYQRDAVRVTTISERSQHADITYQALRVAQHDAENAIINMLRYHDAQNAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF +TRA+V+R T + F VV LSGELSQ ERS+ALQ MRDGRA+VC+ATDVAARGI Sbjct: 243 VFANTRATVNRLTARFSNRGFAVVCLSGELSQTERSHALQAMRDGRAKVCVATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+LELVIHAEL SN E LLHRSGRTGRAGRKG+S V+P + ++AERL + A V+ Sbjct: 303 DLPNLELVIHAELPSNTEGLLHRSGRTGRAGRKGISALVVPPKLTKKAERLLKWAKVTAE 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W APS E I RD +R+L DP + + I DE LLA+ PE +AA +LR++R Sbjct: 363 WIEAPSAEEILRRDEERLLADPTWSEEITEDEAGFAARLLAEQSPETVAAAYLRLYRDRH 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE++ D+R + R F S W +LSVG +AEARWL+P+L Sbjct: 423 SAPEELS-----------APDARPERPERKERAAFGPSRWVALSVGRDDRAEARWLLPLL 471 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVS 514 CR+ G+++ +IGAIRVQ TFVE+S Sbjct: 472 CRAGGLDKDAIGAIRVQDSETFVELS 497 >gi|126736373|ref|ZP_01752115.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. CCS2] gi|126714194|gb|EBA11063.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. CCS2] Length = 692 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 288/533 (54%), Positives = 374/533 (70%), Gaps = 13/533 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + +AL+++GY +LT VQEA+ + L +D+LVSAQTGSGKTV FGLA+ T+LAE+ F Sbjct: 4 TLADALAKQGYTDLTPVQEAVTDDALVGQDLLVSAQTGSGKTVGFGLAIGPTILAEDGTF 63 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 PA P AL IAPTRELA+QV REL+WLYA G +A C+GG+ ERR L+ GAHIVV Sbjct: 64 GPAGRPHALIIAPTRELALQVKRELQWLYAGAGATLASCVGGMDFRDERRSLERGAHIVV 123 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DHI +++S +KAVVLDEADEMLDLGFR+D+EFIL +P +RR LMFSAT+ Sbjct: 124 ATPGRLRDHIMRGTIDLSDIKAVVLDEADEMLDLGFREDLEFILGEAPPERRTLMFSATV 183 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I TLAK+YQ+DAVR+ A++ +QHSDI+YRA+ VA D D AI+N+LRY+ A NAIV Sbjct: 184 PPMIATLAKSYQRDAVRIATATKEKQHSDIEYRALSVANHDTDAAIINVLRYYDAPNAIV 243 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +TRA V+R T L+ F VVALSGEL+Q ERSNALQ MRDGRA+VC+ATDVAARGID Sbjct: 244 FANTRAMVTRLTTRLSNRGFSVVALSGELTQSERSNALQAMRDGRAKVCVATDVAARGID 303 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 LP+LELVIHAEL +N E LLHRSGRTGRAGRKG+S ++P M+RR E L + ++ W Sbjct: 304 LPNLELVIHAELPTNAETLLHRSGRTGRAGRKGISAMIVPAKMKRRGENLLKWGKLTATW 363 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P+ E ++ RD +R+L D ++ DE+ LL +HD EKIAA +LR++ Sbjct: 364 ATPPTAEEVQARDEERLLTDEVWSADFTEDEQAFAKRLLDQHDAEKIAAAYLRLYAGKQS 423 Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489 APE I+ ++D A + +F S WFS+ +G + KAEARWL+PM+C Sbjct: 424 APEFIS---------EYKDGPAAKERKPREAKSFGPSKWFSIDIGREGKAEARWLLPMIC 474 Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLGG 538 ++ GI + IGAIR+QP+ F+E+SA V ++V KL+ LK L G Sbjct: 475 KAGGITKNEIGAIRIQPNEAFIEISAPAVPGFLKSVGSDMKLENQGTLKALDG 527 >gi|294676721|ref|YP_003577336.1| ATP-dependent RNA helicase DbpA [Rhodobacter capsulatus SB 1003] gi|294475541|gb|ADE84929.1| ATP-dependent RNA helicase DbpA [Rhodobacter capsulatus SB 1003] Length = 670 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 292/534 (54%), Positives = 367/534 (68%), Gaps = 12/534 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F ++P + EALS RGY LT VQ+A+ P+L +D+LVSAQTGSGKTVAFGLA+++ Sbjct: 1 MTDFPHLPAALAEALSARGYDALTPVQDAVTRPELAGRDLLVSAQTGSGKTVAFGLAISA 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 LL EN P AL +APTRELAVQV REL WLY K G V+ +GG+ ERR Sbjct: 61 ELLGENGISPYPDLPRALVVAPTRELAVQVSRELSWLYEKAGAVITGAVGGMDARAERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGR+CDHIR L++S L AVVLDEADEMLD+GFR+D+EFIL+S+P+ R Sbjct: 121 LERGAHIVVGTPGRICDHIRRGALDLSALSAVVLDEADEMLDMGFREDLEFILESAPEGR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LA+ +Q++A R++ S H+DIDYR VLV SDR+NAIVN+LR Sbjct: 181 RTLMFSATVPREIERLAQTFQREAERISTVSSRESHADIDYRGVLVDRSDRENAIVNLLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H A+ AIVFCSTRA+V+ T L F VVALSGEL+Q ERS ALQMMRDGRARVCIA Sbjct: 241 LHEAERAIVFCSTRAAVTHLTGKLLNRGFSVVALSGELTQDERSRALQMMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP LELVIHA+L N E LLHRSGRTGRAGRKG+S V+P N++ +AERL Sbjct: 301 TDVAARGIDLPGLELVIHADLPMNREGLLHRSGRTGRAGRKGLSAIVVPLNVRAKAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 REA VSV WE AP+ E I RD +R+L +P + +E + LL H+P+++AA Sbjct: 361 REAQVSVTWEGAPTPEDILARDQERLLTEPALTEPATAEEFDAIARLLETHEPKQLAAAV 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 LR RA APE++ PVS+ G RA R+ F + W+ LS+G Q + Sbjct: 421 LRHFRAARTAPEDVIPVSVGEG-----PKPRA-------REEFGAARWYRLSMGHDQWVD 468 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534 +WL+PMLCR+ + R+ IG IRV D TFV++ D + D+ ++ K Sbjct: 469 PKWLLPMLCRAGDLTRRDIGMIRVMQDQTFVQIHESMADRFEAGLGADRVMEGK 522 >gi|83944259|ref|ZP_00956714.1| dead-box protein, ATP-independent rna helicase [Sulfitobacter sp. EE-36] gi|83844803|gb|EAP82685.1| dead-box protein, ATP-independent rna helicase [Sulfitobacter sp. EE-36] Length = 731 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 293/562 (52%), Positives = 374/562 (66%), Gaps = 31/562 (5%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +AL+ +GY +LT VQEA+ NPDL E D+LVSAQTGSGKTVAFGLA+A TLL ++++ Sbjct: 3 QTIADALATQGYDSLTPVQEAVTNPDLVEADLLVSAQTGSGKTVAFGLAIAPTLLGDDEK 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F A APLAL IAPTRELA+QV REL WLY K G VV C+GG+ ERR L GAHIV Sbjct: 63 FGHAGAPLALIIAPTRELAMQVSRELTWLYGKAGAVVTTCVGGMDTRTERRALDRGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRLCDHI+ +N+S ++AVVLDEADEMLDLGFR+++EFIL +P++RR L+FSAT Sbjct: 123 VATPGRLCDHIKRNNINLSDIRAVVLDEADEMLDLGFREELEFILSEAPEERRTLLFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI LAK+YQ+DA RV E +QH+DI+YRA+ V D +NAI+N+LR++ AKNAI Sbjct: 183 VPAAIAKLAKSYQRDAQRVETVGEKKQHADIEYRALNVHPRDTENAIINVLRFYEAKNAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA+V+R T F VVALSGEL+Q ER+NALQ +RDGRARVCIATDVAARGI Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+LELV+HA+L SN + LLHRSGRTGRAGRKG+S ++P M+ +A RL A + V Sbjct: 303 DLPNLELVVHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKMRSKANRLLGGAKLKVE 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W PS E + D +R+L D + D I D V L+ + E++A F+ ++RA Sbjct: 363 WANPPSAEEVNAEDEKRLLADSAWSDPIPDDAAGFVANLVEQFSAEQLATAFVNLYRARQ 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APE++ + D R R +F S WFS+S+G AE R ++PM+ Sbjct: 423 SAPEQLAEPGTPA-------DER-------PRGDFGPSVWFSISIGRNDDAEPRTILPMI 468 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-------------KLDKGIQLKY 535 CR + + +GAIRVQP TFVE+ A D + KLDK L Sbjct: 469 CRMGDLTKDDVGAIRVQPSHTFVEILATSADKFTNALGPDMKVEDGAVVTKLDKAPDLSR 528 Query: 536 LGGEKPDFRGYKSS--GFKSKN 555 G KP RG K + G +S N Sbjct: 529 --GPKPGGRGPKPNRGGPRSDN 548 >gi|304392954|ref|ZP_07374885.1| ATP-dependent RNA helicase protein [Ahrensia sp. R2A130] gi|303294952|gb|EFL89321.1| ATP-dependent RNA helicase protein [Ahrensia sp. R2A130] Length = 634 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 299/573 (52%), Positives = 389/573 (67%), Gaps = 15/573 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F I + + AL+ RGY LT VQ+++ N +L D+LVSAQTGSGKTVAFG+A+A Sbjct: 1 MTEFTGIARPLARALAARGYETLTPVQQSVSNTELDGADLLVSAQTGSGKTVAFGIAIAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +RF PA PLAL IAPTRELA+QV RELEWLYA G V+ C+GG+ + ERR Sbjct: 61 TLLDGEERFGPADKPLALVIAPTRELALQVCRELEWLYADAGAVITSCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G HIVVGTPGRL DHI + ++ L+AVVLDEADEMLDLGF++D+EFIL+++P++R Sbjct: 121 LERGVHIVVGTPGRLRDHISRRAMDCRQLQAVVLDEADEMLDLGFKEDLEFILEAAPEER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ AI LAK+YQ+DAVR+ +E QH+DI+YRA++VA +R+NAIVN+LR Sbjct: 181 RTLMFSATVPNAIAGLAKSYQRDAVRITTEAERDQHADIEYRALVVAPRERENAIVNVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ +NA+VFC+TRASV+ F VVALSGELSQ ERS+ALQ +RDGRA+VCIA Sbjct: 241 YYDPENALVFCNTRASVNHMVARFTNRGFSVVALSGELSQNERSHALQALRDGRAKVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP LELVIHA+L SNPE LLHRSGRTGRAGRKG+S ++ + RAERL Sbjct: 301 TDVAARGIDLPKLELVIHADLPSNPETLLHRSGRTGRAGRKGISALMVDVKGRNRAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 R A + W PS + + RD +R+L P + + DE+ + LL + PE+IAA + Sbjct: 361 RFAKLDATWANPPSADDVYGRDEERMLASPALSEPPKADEQATIAKLLEQFSPEQIAAAY 420 Query: 421 LRIHRAGLCAPEEITPVSL-VSGRDRF-RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 LR RA APE+I VS+ + ++ R + + R +F+ S W SLSVG KQ Sbjct: 421 LRQVRADHSAPEDIEIVSVHQPNKPKYERSEGKQKTFEKKPRRDFENSVWVSLSVGRKQN 480 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLK 534 AE RWL+P++C + G+ + IG+IR+QP TFVE+ AD D L L+K I++ Sbjct: 481 AEPRWLIPLICNAGGLTKSDIGSIRMQPAETFVELDADRADDFMNALGANATLEKNIRVT 540 Query: 535 YLGGEKPDF--------RGYKSSGFKSKNSQDG 559 + G PD + Y+ FK S DG Sbjct: 541 PVDG-VPDIAPQKPFAKKPYEKKPFKKGRSADG 572 >gi|83953300|ref|ZP_00962022.1| dead-box protein, ATP-independent RNA helicase [Sulfitobacter sp. NAS-14.1] gi|83842268|gb|EAP81436.1| dead-box protein, ATP-independent RNA helicase [Sulfitobacter sp. NAS-14.1] Length = 731 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 293/562 (52%), Positives = 374/562 (66%), Gaps = 31/562 (5%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +AL+ +GY +LT VQEA+ NPDL E D+LVSAQTGSGKTVAFGLA+A TLL ++++ Sbjct: 3 QTIADALATQGYDSLTPVQEAVTNPDLVEADLLVSAQTGSGKTVAFGLAIAPTLLGDDEK 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F A APLAL IAPTRELA+QV REL WLY K G VV C+GG+ ERR L GAHIV Sbjct: 63 FGHAGAPLALIIAPTRELAMQVSRELTWLYGKAGAVVTTCVGGMDTRTERRALDRGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRLCDHI+ +N+S ++AVVLDEADEMLDLGFR+++EFIL +P++RR L+FSAT Sbjct: 123 VATPGRLCDHIKRNNINLSDIRAVVLDEADEMLDLGFREELEFILSEAPEERRTLLFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI LAK+YQ+DA RV E +QH+DI+YRA+ V D +NAI+N+LR++ AKNAI Sbjct: 183 VPAAIAKLAKSYQRDAQRVETVGEKKQHADIEYRALNVHPRDTENAIINVLRFYEAKNAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA+V+R T F VVALSGEL+Q ER+NALQ +RDGRARVCIATDVAARGI Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+LELV+HA+L SN + LLHRSGRTGRAGRKG+S ++P M+ +A RL A + V Sbjct: 303 DLPNLELVVHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKMRSKANRLLGGAKLKVE 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W PS E + D +R+L D + D I D V L+ + E++A F+ ++RA Sbjct: 363 WANPPSAEEVNAEDEKRLLADSAWSDPIPDDAAGFVANLVEQFSAEQLATAFVNLYRARQ 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APE++ + D R R +F S WFS+S+G AE R ++PM+ Sbjct: 423 SAPEQLAEPGTPA-------DER-------PRGDFGPSVWFSISIGRNDDAEPRTILPMI 468 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-------------KLDKGIQLKY 535 CR + + +GAIRVQP TFVE+ A D + KLDK L Sbjct: 469 CRMGDLTKDDVGAIRVQPSHTFVEILATSADKFINALGPDMKVEDGAVVTKLDKAPDLSR 528 Query: 536 LGGEKPDFRGYKSS--GFKSKN 555 G KP RG K + G +S N Sbjct: 529 --GPKPGGRGPKPNRGGPRSDN 548 >gi|84516304|ref|ZP_01003664.1| DEAD-box protein, ATP-independent RNA helicase [Loktanella vestfoldensis SKA53] gi|84510000|gb|EAQ06457.1| DEAD-box protein, ATP-independent RNA helicase [Loktanella vestfoldensis SKA53] Length = 762 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 281/510 (55%), Positives = 360/510 (70%), Gaps = 5/510 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + ALS +GY +LT VQ A+ + + ++D+LVSAQTGSGKTV FGLA+ T+L E+ F Sbjct: 7 TLAAALSAQGYTDLTPVQVAVTDAAVADQDLLVSAQTGSGKTVGFGLAIGPTILPEDGLF 66 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 PA PLAL IAPTRELA+QV REL+WLYA TG V+A C+GG+ E+R L+ GA IVV Sbjct: 67 GPAGRPLALVIAPTRELALQVKRELQWLYAGTGAVLASCVGGMDFRDEKRSLERGAQIVV 126 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DHI +++S +KAV+LDEADEMLDLGFR+D+EFILD +P RR LMFSAT+ Sbjct: 127 ATPGRLRDHIMRNTIDLSDIKAVILDEADEMLDLGFREDLEFILDQAPPSRRTLMFSATV 186 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI LA++YQK+AVRV S+ QHSDI+YRA+ VA D D AI+N+LR++ A NAIV Sbjct: 187 PAAIAKLAQSYQKNAVRVASTSKESQHSDIEYRALTVANHDIDAAIINVLRFYDAPNAIV 246 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +TRA V+R T LA F VALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGID Sbjct: 247 FANTRAMVTRLTTRLANRGFATVALSGELSQTERTHALQAMRDGRARVCVATDVAARGID 306 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 LP+LELVIHAEL +N E LLHRSGRTGRAGRKG+S ++P M+RRA+ L + W Sbjct: 307 LPNLELVIHAELPTNAEILLHRSGRTGRAGRKGISAMIVPAKMKRRAQNLLTWGKLQATW 366 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P+ + + +D R+L DP++ ++ E++ LLA+H PEKIAA +LR++ Sbjct: 367 ALPPTADEVTAKDEDRLLTDPVWSETFTDSEQEFAARLLAQHAPEKIAAAYLRLYAGKQS 426 Query: 430 APEEITPV-SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE++ + DR D R + +F S WF + VG KAEARWL+PM+ Sbjct: 427 APEELSDYKDGPAAPDRKGDPDRPPR----DHKSFGPSRWFRVDVGRDGKAEARWLLPMI 482 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 C++ GI + IGAIR+QPD TFVE+S V Sbjct: 483 CKAGGITKTEIGAIRIQPDETFVEISEPAV 512 >gi|163797256|ref|ZP_02191210.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD) [alpha proteobacterium BAL199] gi|159177551|gb|EDP62105.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD) [alpha proteobacterium BAL199] Length = 575 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 278/516 (53%), Positives = 368/516 (71%), Gaps = 12/516 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M FEN + AL+ +GY T VQ ++L P++ D+LVSAQTGSGKTVAFGLA+A Sbjct: 1 MNAFENAHPALAGALAAQGYETPTPVQASVLAPEVSSADLLVSAQTGSGKTVAFGLAIAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL E +RF A PLAL +APTRELA+QV REL+WLYA TG A C+GG+ + RER Sbjct: 61 TLLEEAERFGRAEEPLALVVAPTRELALQVRRELDWLYAPTGARTASCVGGMDMRRERDV 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L +GAH+V+GTPGRL DHI L++S ++AVVLDEADEMLDLGFR+D+E+ILD++P R Sbjct: 121 LSSGAHLVIGTPGRLRDHIERGSLDLSKIRAVVLDEADEMLDLGFREDLEYILDAAPSDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK YQ++AVR+ A E QH DI+YRA LVA +DRDNAIVN L Sbjct: 181 RTLMFSATVPSTIAHLAKRYQRNAVRLATAGERTQHHDIEYRAHLVAPNDRDNAIVNTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +H A++A+VFC TR +V + LA F VVALSGELSQ ER++ALQ +RDGRARVC+A Sbjct: 241 FHDARSAMVFCGTRIAVQHLSSRLANRGFSVVALSGELSQNERTHALQAIRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LV+HA++ +N + LLHRSGRTGRAGRKG+SV ++P + +RL Sbjct: 301 TDVAARGIDLPTLDLVVHADVPNNSDTLLHRSGRTGRAGRKGVSVLIVPHTRRHTVQRLL 360 Query: 361 REA-NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + A N+ W P+ EAI +RD +R++QDP+ + + +E + LLA HDPEK+AA Sbjct: 361 KSANNLRAAWMAPPNAEAIAKRDRERMMQDPVLSEDVTPEELEFARELLATHDPEKVAAA 420 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 +LR+H+A APEE+ V+ S + +RD+F GS WF +S G K +A Sbjct: 421 YLRLHQASRPAPEELLDVASASSEPPRK-----------ARDDFAGSVWFKVSAGRKHQA 469 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 EARWL+P++CR+ + + +GAIR+ P+ + VE++A Sbjct: 470 EARWLLPLICRAGHVTKNEVGAIRILPNESHVEITA 505 >gi|84684523|ref|ZP_01012424.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Maritimibacter alkaliphilus HTCC2654] gi|84667502|gb|EAQ13971.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Rhodobacterales bacterium HTCC2654] Length = 719 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 285/560 (50%), Positives = 387/560 (69%), Gaps = 25/560 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ ++I EAL+ERGY LT VQEA+ +PDL +D+LVSAQTGSGKTV FGLA+A TLL E Sbjct: 20 NMTRLINEALAERGYDTLTPVQEAVSDPDLAGRDLLVSAQTGSGKTVGFGLAIAPTLLGE 79 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ F PA PLAL +APTRELA+QV REL WL+ KTG +A C+GG+ + ERR L+ GA Sbjct: 80 DEEFGPAGLPLALVVAPTRELAMQVKRELIWLFGKTGARLASCVGGMDMRDERRALERGA 139 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL DHI+ L++S L+A+VLDEADEMLDLGFR+D+EF+L+ +P++RR+L+F Sbjct: 140 HIVVGTPGRLRDHIQRGSLDMSELRAIVLDEADEMLDLGFREDLEFMLEEAPEERRILLF 199 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P I LA+ YQ DA RVN + QH+DI Y+A+ VA +D +NAI N+LR+H ++ Sbjct: 200 SATVPPTIAKLAEQYQNDAARVNTITGATQHADIAYQAIRVAQTDTENAIFNLLRFHDSE 259 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 NAIVF +TRA V+ T L+ VV+LSGELSQ ER++ALQ MRDGRA+VC+ATDVAA Sbjct: 260 NAIVFANTRAQVAHLTARLSNRGLNVVSLSGELSQNERTHALQAMRDGRAQVCVATDVAA 319 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGIDLP+L+LVIHA+L N E+L HRSGRTGRAGRKG+S ++P ++ ERL A Sbjct: 320 RGIDLPNLDLVIHADLPKNTESLTHRSGRTGRAGRKGISALIVPPRDVKKTERLLGWAKT 379 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 + W APS + I +D +R+L DP++ + + + + +LA++ E +AA +LR+ + Sbjct: 380 TAEWTTAPSADDIHAKDEERLLADPVWTEPVTEAQAAFAEKVLAQYGAEAVAAAYLRLFQ 439 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485 + APE++ P R R F S WF+LSVG +KAEARWL+ Sbjct: 440 SRQGAPEDLLPPDTKPERK--------------ERKPFGPSKWFALSVGQAEKAEARWLL 485 Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV---SADG-VDLLRRTVKLDKGIQLKYLGG--- 538 P++ R+SG+++ IGAIRVQ T++E+ SADG + L +LD+GI+++ L Sbjct: 486 PLIMRASGVDKADIGAIRVQGAETYLELTEKSADGFLSSLGADGELDEGIKVRALDAAPE 545 Query: 539 ----EKPDFRGYKSSGFKSK 554 KP+ R K G K Sbjct: 546 LGPRPKPERRDGKPGGRDGK 565 >gi|163732640|ref|ZP_02140085.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseobacter litoralis Och 149] gi|161394000|gb|EDQ18324.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseobacter litoralis Och 149] Length = 703 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 288/554 (51%), Positives = 368/554 (66%), Gaps = 30/554 (5%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + +AL+E+GY LT VQEA+ P+L + D+LVSAQTGSGKTV FGLA+A TLL + +R Sbjct: 3 KTLSDALAEQGYDTLTPVQEAVTAPELAQADLLVSAQTGSGKTVGFGLAIAPTLLDDQER 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F PA PLAL IAPTRELA QV REL WLYAK G VV C+GG+ ERR L GAH+V Sbjct: 63 FGPAGTPLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTERRALDRGAHVV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRLCDHI+ + +++L+AVVLDEADEMLDLGFRD++EFILD +PK RR LMFSAT Sbjct: 123 VATPGRLCDHIKRGNIELANLRAVVLDEADEMLDLGFRDELEFILDEAPKDRRTLMFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI LA++YQ+DA R+ SENRQH+DI+YRA+ D +NAI+N+LR++ AKNAI Sbjct: 183 VPKAIAKLAESYQRDAQRIATVSENRQHADIEYRALNTHPRDVENAIINVLRFYEAKNAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA+V+R T F VVALSGEL+Q ERSNALQ +RDGRARVC+ATDVAARGI Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S ++P ++ +A RL A + Sbjct: 303 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPPKLRSKANRLLGSAKLKAE 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W+ PS + +D R+L DPL+ ++ D +++V L ++A + ++A Sbjct: 363 WDEPPSAAEVNAQDTTRLLSDPLWTATVGEDSEELVAQLAQDFTATQLAQAVVSFYQAQR 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE+T D D R R F S WFS+SVG AE R L+PM+ Sbjct: 423 SAPEELT--------DAGTPDDR-------PRKTFGPSVWFSVSVGRDTGAEPRTLLPMI 467 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL-------- 536 C + + IGAIR++ D +FVEV A D L V L+ GI L L Sbjct: 468 CNKGDMTKDDIGAIRIRQDQSFVEVLASRADGLVAAVGPDMTLEAGIVLTRLAQAPDLGQ 527 Query: 537 ---GGEKPDFRGYK 547 GG KP + Y+ Sbjct: 528 DRPGGGKPGAKPYR 541 >gi|254486145|ref|ZP_05099350.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp. GAI101] gi|214043014|gb|EEB83652.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp. GAI101] Length = 717 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 286/552 (51%), Positives = 367/552 (66%), Gaps = 29/552 (5%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +AL+++GY +LT VQEA+ +P L + D+LVSAQTGSGKTV FGLA+A TLL E++ Sbjct: 3 QTIADALAKQGYDSLTPVQEAVTDPALADADLLVSAQTGSGKTVGFGLAIAPTLLGESET 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F A APLAL IAPTRELA+QV REL WLY G VV C+GG+ ERR L GAH+V Sbjct: 63 FGHAGAPLALVIAPTRELAMQVSRELTWLYGPAGAVVTTCVGGMDTRTERRALDRGAHVV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRLCDHI+ +N++ ++AVVLDEADEMLDLGFR+++EFIL +P+ RR L+FSAT Sbjct: 123 VATPGRLCDHIKRNNINLNDIRAVVLDEADEMLDLGFREELEFILSEAPEDRRTLLFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI LAK+YQ++A RV E +QH+DI+YRA+ V D +NAI+N+LR++ AKNAI Sbjct: 183 VPAAIAKLAKSYQRNAQRVETIGEAKQHTDIEYRALTVHPRDTENAIINVLRFYEAKNAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA+V+R T F VVALSGELSQ ER+NALQ +RDGRARVCIATDVAARGI Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELSQSERTNALQALRDGRARVCIATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S ++P ++ +A RL A + V Sbjct: 303 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKLRSKANRLIGGAKLKVE 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W PS E + D +R+L D + D I D K V L+ + E++A F+ ++RA Sbjct: 363 WANPPSAEEVNAEDEKRLLADSAWSDPIPDDAKGFVANLVDQFSAEQLATAFVNLYRARQ 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APE++ + R +F S WFS+SVG Q AE R ++PM+ Sbjct: 423 SAPEQLAEPGTPADEK--------------PRGDFGPSVWFSISVGRNQDAEPRTILPMI 468 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV---------SADGVDLLRR----TVKLDKGIQLKY 535 CR + + +GAIRVQP TFVE+ +A G D+ KLDK L Sbjct: 469 CRMGDLTKDDVGAIRVQPSHTFVEILATSAAKFTNALGPDMKVEDGAIVTKLDKAPDLSR 528 Query: 536 LGGEKPDFRGYK 547 G KP RG K Sbjct: 529 --GPKPGGRGPK 538 >gi|254438889|ref|ZP_05052383.1| DbpA RNA binding domain family [Octadecabacter antarcticus 307] gi|198254335|gb|EDY78649.1| DbpA RNA binding domain family [Octadecabacter antarcticus 307] Length = 702 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 288/588 (48%), Positives = 379/588 (64%), Gaps = 46/588 (7%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + +A+ RGY LT VQEA +P L +D+LVSAQTGSGKT+ FG+A+A +LL + +R Sbjct: 3 QALADAIKARGYDTLTPVQEACSDPALEGRDLLVSAQTGSGKTLGFGIAIAQSLLGDAER 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F A APLAL IAPTRELA+QV RELEWLY KTG V+A +GG+ + ERR L GAHIV Sbjct: 63 FDRADAPLALVIAPTRELALQVKRELEWLYEKTGAVIASTVGGMDMRDERRALGRGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DHI K +++S LKAVVLDEADEMLDLGFR+D+EFILD SPK R+ LMFSAT Sbjct: 123 VSTPGRLRDHIMRKSIDLSSLKAVVLDEADEMLDLGFREDLEFILDESPKDRQTLMFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + +I LA+ YQ+DA RV + +QH+DI+YRA V+ D +NAI+N+LRY A NAI Sbjct: 183 VPASIAKLAQRYQRDAERVATTTGEKQHADIEYRAFCVSARDTENAIINVLRYFEAPNAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA+V+R T L+ F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI Sbjct: 243 VFCNTRATVNRMTTRLSNRGFSVVALSGELSQSERTHALQSMRDGRARVCVATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+L+LVIHAEL +N + LLHRSGRTGRAGRKG S ++P ++++AERL A ++ Sbjct: 303 DLPNLDLVIHAELPTNQDTLLHRSGRTGRAGRKGTSAMIVPPAVRKKAERLLGWAKLTAT 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W APS + + +D +R+L+D + + + MV + + PE++AA +LR++R Sbjct: 363 WADAPSADEVTAKDEERMLEDTDWSADVDESAQAMVATMAERFAPEQLAAAYLRLYREKH 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE+ V + R F S WFSL G AE R ++PM+ Sbjct: 423 TAPEELADVGEPAK----------------PRQAFGPSVWFSLPGGRDAGAEPRRILPMI 466 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD-------------------- 528 C+ I + IGAIR+QPD++++EV V L + D Sbjct: 467 CKMGNITKDDIGAIRIQPDMSYIEVREASVKTLTAALGTDMTLENGAPLTRIANPPSFER 526 Query: 529 ----KGIQLKYLG---GEKPDFRGYKSSGFKSKNSQD---GATKRFKR 566 K + +Y G G KPD++ +KSK+ D A K F++ Sbjct: 527 GPARKDAKPRYDGPNSGGKPDYKNKDKPAYKSKDKSDYKPAAEKSFEK 574 >gi|163744883|ref|ZP_02152243.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanibulbus indolifex HEL-45] gi|161381701|gb|EDQ06110.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanibulbus indolifex HEL-45] Length = 699 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 289/547 (52%), Positives = 366/547 (66%), Gaps = 20/547 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +AL+++GY LT+VQEA+ +P L + D+LVSAQTGSGKTV FGLA+A TLL ++ Sbjct: 3 QTIADALAQQGYETLTAVQEAVTDPALNDADLLVSAQTGSGKTVGFGLAIAPTLLGDDTH 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F A APLAL IAPTRELA+QV REL WLY K G +V C+GG+ ERR L GAHIV Sbjct: 63 FGQAGAPLALIIAPTRELAMQVSRELTWLYGKAGAIVTTCVGGMDTRTERRALDRGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRLCDHI+ +N+ ++AVVLDEADEMLDLGFR+D+EFIL SP+ RR L+FSAT Sbjct: 123 VATPGRLCDHIKRNNINLDAIRAVVLDEADEMLDLGFREDLEFILSESPEDRRTLLFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI LAK+YQ+DA R+ E +QHSDI+YRA+ V D +NAI+N+LR++ AKNAI Sbjct: 183 VPAAIAKLAKSYQRDAQRITTVGEAKQHSDIEYRALNVHPRDTENAIINVLRFYEAKNAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA+V+R T F VVALSGEL+Q ER+NALQ +RDGRARVCIATDVAARGI Sbjct: 243 VFCNTRAAVARLTSRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S ++P ++ +A RL A + V Sbjct: 303 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKLRSKANRLIGGAKLKVE 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W PS + D R+L D + D I D + V L+ + E++A F+ ++RA Sbjct: 363 WAAPPSAAEVNAADEARLLADSAWSDPIPEDAEGFVANLVEQFSAEQLATAFVNLYRARQ 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE+ G D+ R F S WFS+S G AE R L+PML Sbjct: 423 SAPEELAEPG-APGDDK-------------PRPAFGKSVWFSISTGRNDGAEPRTLLPML 468 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV---SADG-VDLLRRTVKLDKGIQLKYLGGEKPDF- 543 CR + + IGAIRVQ +FVEV S G + L +KL++G L L + PD Sbjct: 469 CRRGDLTKDDIGAIRVQGSHSFVEVLETSVPGLLSALGGDMKLEEGAVLTQL-DKAPDLA 527 Query: 544 RGYKSSG 550 RG K +G Sbjct: 528 RGPKPAG 534 >gi|254450953|ref|ZP_05064390.1| ATP-dependent rna helicase, dead/deah box family [Octadecabacter antarcticus 238] gi|198265359|gb|EDY89629.1| ATP-dependent rna helicase, dead/deah box family [Octadecabacter antarcticus 238] Length = 706 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 284/596 (47%), Positives = 378/596 (63%), Gaps = 54/596 (9%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + +A+ RGY LT VQEA +P L +D+LVSAQTGSGKT+ FG+A+A LL + +R Sbjct: 3 QALADAIEARGYDTLTPVQEACGDPALEGRDLLVSAQTGSGKTLGFGIAIAPNLLGDAER 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F A APLAL IAPTRELA+QV RELEWLY KTG V+A +GG+ + ERR L GAHIV Sbjct: 63 FDRADAPLALVIAPTRELALQVKRELEWLYEKTGAVIASTVGGMDMRDERRALGRGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DHI K +++S+LKAVVLDEADEMLDLGFR+D+EFILD SPK R+ L+FSAT Sbjct: 123 VSTPGRLRDHIMRKSIDLSNLKAVVLDEADEMLDLGFREDLEFILDESPKDRQTLLFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + +I LA+ YQ++A RV + +QH+DI+YRA V+ D +NAI+N+LRY A NAI Sbjct: 183 VPASIAKLAQRYQRNAERVATTTGEKQHADIEYRAFRVSARDTENAIINVLRYFEAPNAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA+V+R T L+ F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI Sbjct: 243 VFCNTRATVNRMTTRLSNRGFSVVALSGELSQTERTHALQSMRDGRARVCVATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+L+LVIHAEL +N + LLHRSGRTGRAGRKG S ++P ++++AERL A ++ Sbjct: 303 DLPNLDLVIHAELPTNQDTLLHRSGRTGRAGRKGTSAMIVPPAVRKKAERLLGWAKLTAT 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W APS + + +D +R+L+D + ++ MV + + PE++AA +LR++R Sbjct: 363 WADAPSADEVTAKDEERMLEDTDWSADVEESATAMVATMAERFAPEQLAAAYLRLYREKH 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE++ V + R F S WFSL G AE R ++PM+ Sbjct: 423 TAPEELSDVGEPA----------------KPRQAFGPSVWFSLPGGRDAGAEPRRILPMI 466 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD-------------------- 528 C+ I + IGAIR+QPD +++EV V L + D Sbjct: 467 CKMGNITKDDIGAIRIQPDTSYIEVREASVKTLTAALGSDMTLENGAPLTRVANPPSFER 526 Query: 529 ---------------KGIQLKYLGGEKPDFRGYKSSGFKSKNSQD---GATKRFKR 566 G + Y G+KPD++ +K+K+ D A K F++ Sbjct: 527 GPARKESKPRYDGPKSGGKPDYKSGDKPDYKNKDKPAYKAKDKSDFKPAAEKPFEK 582 >gi|126728360|ref|ZP_01744176.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula stellata E-37] gi|126711325|gb|EBA10375.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula stellata E-37] Length = 736 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 271/509 (53%), Positives = 359/509 (70%), Gaps = 16/509 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP + +AL+ERGY LT VQEA+ P+ +D+LVSAQTGSGKTV FGLA+A TLL E Sbjct: 2 IP-ALTDALTERGYATLTPVQEAVTAPEAFGRDLLVSAQTGSGKTVGFGLAIAPTLLGEE 60 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F PA PLAL +APTRELA QV +EL WLY KTG +V C+GG+ V +ERR L+ G H Sbjct: 61 QAFGPAGTPLALVVAPTRELAFQVMQELRWLYEKTGAMVNSCVGGMDVRQERRFLERGTH 120 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVVGTPGRLCDHIR L++S ++AVVLDEADEMLDLGFR+D+EFIL ++P +RR L+FS Sbjct: 121 IVVGTPGRLCDHIRRGALDLSDVRAVVLDEADEMLDLGFREDLEFILQTAPAERRTLLFS 180 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+SP I +A+ +QKDA R+N ++ +QH+DI Y+A+ VA +D D+AI N+LR+H ++ Sbjct: 181 ATVSPVIGRIAEEFQKDAFRINTINKAQQHADIAYKALRVAQADSDHAIFNLLRFHDDES 240 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF +TRA V+ T L VV+LSGELSQQER++ALQ MRDGRARVC+ATDVAAR Sbjct: 241 AIVFANTRAQVNHLTARLHNRGLSVVSLSGELSQQERTHALQAMRDGRARVCVATDVAAR 300 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GIDLP+L LVIHA+L +N E+LLHRSGRTGRAG+KG+S ++P ++AERL + A ++ Sbjct: 301 GIDLPNLSLVIHADLPTNTESLLHRSGRTGRAGKKGISALIVPPKSVKKAERLLKWAKIT 360 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 W PS E I RD +++L DP + + D+ + LL H PE +AA +R+H + Sbjct: 361 AEWAVPPSAEDISARDEEKLLTDPSWQMGVPEDQAEFAARLLEAHGPEAVAAALVRMHLS 420 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 APE++ + RD F S WF+LSVG +AEARWL+P Sbjct: 421 RHSAPEDLQSPDAPARRD---------------TKGFGPSRWFALSVGRNDRAEARWLLP 465 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 ++ R++ + + +IGAIRVQ T+VE++A Sbjct: 466 LILRATDLEKDAIGAIRVQDTETYVEIAA 494 >gi|260429679|ref|ZP_05783655.1| dead-box ATP-dependent rna helicase 53 [Citreicella sp. SE45] gi|260419162|gb|EEX12416.1| dead-box ATP-dependent rna helicase 53 [Citreicella sp. SE45] Length = 772 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 286/509 (56%), Positives = 369/509 (72%), Gaps = 14/509 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +ALSERGY LT VQEA++ P+L D+LVSAQTGSGKTV FGLA+A TLL + RF Sbjct: 5 LSDALSERGYDTLTPVQEAVIAPELAGLDLLVSAQTGSGKTVGFGLAIAPTLLGDETRFG 64 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PA+APLAL +APTRELA QV REL WL+A+TG VVA C+GG+ V +ERR L+ GAHIVVG Sbjct: 65 PAAAPLALVVAPTRELAFQVMRELTWLFARTGAVVASCVGGMDVRQERRALERGAHIVVG 124 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI + L++S ++AVVLDEADEMLDLGFR+D+EF+L +P+ RR L+FSAT+ Sbjct: 125 TPGRLRDHIERESLDLSAIRAVVLDEADEMLDLGFREDLEFMLGEAPEDRRTLLFSATVP 184 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I TLAK+YQ+DA RVN QH+DI Y+A+ VA SD ++AI N+LR+H ++AIVF Sbjct: 185 PMIATLAKSYQRDARRVNTVDSASQHADISYQAIRVAQSDVEHAIFNLLRFHDDESAIVF 244 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +TRA+VSR T LA V+LSGELSQ ERS+ALQ MRDGRARVC+ATDVAARGIDL Sbjct: 245 ANTRAAVSRLTARLANRGLATVSLSGELSQTERSHALQAMRDGRARVCVATDVAARGIDL 304 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P+L LVIHA+L +N E LLHRSGRTGRAGRKG+S ++P + ++AERL + A +S W Sbjct: 305 PNLNLVIHADLPTNTETLLHRSGRTGRAGRKGISALIVPSKVAKKAERLLKWAKISAEWT 364 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430 APSV+ I+ +D +R+L DP++ + + ++ + LLA H PE IAA +LR+++A A Sbjct: 365 VAPSVDDIQRKDEERLLADPVWSEPLTEEQGAFAEKLLALHQPEVIAAAYLRLYQARHAA 424 Query: 431 PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCR 490 EE+ P RD F S W +LSVG +AEARWL+P+LCR Sbjct: 425 AEELLPPDTKPAAREPRD--------------FGPSRWVTLSVGRDNRAEARWLLPLLCR 470 Query: 491 SSGINRQSIGAIRVQPDLTFVEVSADGVD 519 + +++ SIGAIRVQ TFVE++ V+ Sbjct: 471 AGNLDKSSIGAIRVQDSETFVELAEPSVE 499 >gi|159043402|ref|YP_001532196.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157911162|gb|ABV92595.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL 12] Length = 730 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 290/542 (53%), Positives = 370/542 (68%), Gaps = 21/542 (3%) Query: 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76 ++GY LT VQ A+ +P L E D+LVSAQTGSGKTVAFGLA+A TLLA+ F PA+APL Sbjct: 14 DKGYDTLTPVQIAVSDPALVEADLLVSAQTGSGKTVAFGLAIAPTLLADAAAFGPAAAPL 73 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 L IAPTRELA+QV RELEWLY G + C+GG+ ERR L GAH+VV TPGRL Sbjct: 74 GLVIAPTRELAMQVRRELEWLYGPAGAQITSCVGGMDARDERRALGRGAHVVVATPGRLR 133 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 DHI +++ ++AVVLDEADEMLDLGFR+D+EFIL ++P +RR LMFSAT+ PAI +L Sbjct: 134 DHIERGNIDLDAVRAVVLDEADEMLDLGFREDLEFILGAAPSERRTLMFSATVPPAIASL 193 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 A+ YQKDA R++ +E RQH+DI YRA++V D +NAI+N+LRY+ A NAIVFC+TRA Sbjct: 194 AQLYQKDARRISTRAETRQHADIAYRAMVVGPRDEENAIINVLRYYEAANAIVFCNTRAM 253 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 V+R T + FQVVALSGEL+Q ER++ALQ MRDGRA+VC+ATDVAARGIDLP+LELV Sbjct: 254 VNRLTTRFSNRGFQVVALSGELTQSERTHALQAMRDGRAQVCVATDVAARGIDLPNLELV 313 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376 +HAEL S+ + LLHRSGRTGRAGRKG+S ++P +++AERL + A V+ W PS E Sbjct: 314 VHAELPSSSDTLLHRSGRTGRAGRKGVSAVIVPVKFRKKAERLLKWAKVTPDWVSPPSAE 373 Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITP 436 +R +DA R+L+DP + + E +MV L+ PE++AA LR A APEEI+ Sbjct: 374 DVRAQDAARLLEDPAWETPVAEGEAEMVARLVEAFSPEQLAAAVLRAGSAQRSAPEEIS- 432 Query: 437 VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINR 496 A + R F S+WF+LSVG +AE RW++PMLCR G +R Sbjct: 433 ---------------AGDMTPTPRVPFGPSAWFTLSVGRASRAEPRWILPMLCRVGGFDR 477 Query: 497 QSIGAIRVQPDLTFVEVSADGV-DLLR---RTVKLDKGIQLKYLGGEKPDFRGYKSSGFK 552 IGAIR+Q D TFVE+ V D L+ ++ L+ G L L E PD SG Sbjct: 478 DEIGAIRIQQDETFVEIKEAAVPDTLQGSEASITLEDGAVLSRL-AEAPDLSQRDGSGPA 536 Query: 553 SK 554 K Sbjct: 537 RK 538 >gi|255261566|ref|ZP_05340908.1| dead-box ATP-dependent rna helicase 53 [Thalassiobium sp. R2A62] gi|255103901|gb|EET46575.1| dead-box ATP-dependent rna helicase 53 [Thalassiobium sp. R2A62] Length = 736 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 284/533 (53%), Positives = 367/533 (68%), Gaps = 18/533 (3%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I AL +GY LT VQ + P+L +D+LVSAQTGSGKTV FGLA+A +L E+ F Sbjct: 16 TIAAALEAQGYSTLTPVQTEVSKPELIGRDMLVSAQTGSGKTVGFGLAIAPVILEEDGNF 75 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A++PLAL IAPTRELA+QV RELEWLY GV+V +GG+ +ERR L+ G HIVV Sbjct: 76 ERAASPLALCIAPTRELAMQVKRELEWLYRPAGVIVTSAVGGMDARQERRSLERGTHIVV 135 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DHI L++S +++VVLDEADEMLDLGFR+D+E+IL +P++R+ L+FSAT+ Sbjct: 136 ATPGRLRDHIMRGSLDMSAIRSVVLDEADEMLDLGFREDLEYILGEAPEERQTLLFSATV 195 Query: 190 SPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 I LAK YQKD AVRV+ +E QH+DI+YRA+ VA +D +NAI+N+LRY+ A NA+ Sbjct: 196 PRGIVGLAKAYQKDDAVRVSTVAEREQHADIEYRALRVAGNDPENAIINVLRYYEAANAL 255 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA V+R T A FQVVALSGEL+Q ER++ALQ MRDGRARVC+ATDVAARGI Sbjct: 256 VFCNTRAVVNRLTSRFANRGFQVVALSGELTQAERTHALQAMRDGRARVCVATDVAARGI 315 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP LELV+HAEL SN E LLHRSGRTGRAGRKG+S ++PQ ++AERL A V Sbjct: 316 DLPKLELVVHAELPSNAETLLHRSGRTGRAGRKGVSALIVPQRWSKKAERLLGWAKVKAE 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W+ PS + + RD +R+L D ++ DE L + PE+IAA +LR++RA Sbjct: 376 WDVPPSADDVLRRDEERLLADDVWKAETTKDEAVFATKLTEMYSPEQIAASYLRLYRARQ 435 Query: 429 CAPEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487 APE++ P S + R+R R F S WF + +G K KAEARW++PM Sbjct: 436 SAPEDLADPGSAPASRER------------KERAPFGPSKWFRVGIGRKDKAEARWILPM 483 Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEV---SADGV-DLLRRTVKLDKGIQLKYL 536 LCR+ I++ IGAIRVQ TFVE+ SA G L ++L+KG+++ L Sbjct: 484 LCRAGDISKDDIGAIRVQDAETFVELKETSAPGFKSALGDAMELEKGVEVTEL 536 >gi|119387071|ref|YP_918126.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus denitrificans PD1222] gi|119377666|gb|ABL72430.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans PD1222] Length = 687 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 275/522 (52%), Positives = 361/522 (69%), Gaps = 14/522 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +GY +LTSVQEA L P+ R +DVLVSAQTGSGKTVAFGLA+A +L + + A PLA Sbjct: 27 KGYASLTSVQEAALAPEARGRDVLVSAQTGSGKTVAFGLAMAGDIL-DGETLPEAGQPLA 85 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 LAIAPTRELA+QV REL WLY + G +A C+GG+ ERR L+ GAHIVVGTPGRL D Sbjct: 86 LAIAPTRELALQVARELGWLYEQAGARIATCVGGMDYRTERRALERGAHIVVGTPGRLRD 145 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI L+++ L+A VLDEADEMLDLGFR+D+EFIL S+P +RR L+FSAT+ PAI LA Sbjct: 146 HIERGSLDLTALRACVLDEADEMLDLGFREDLEFILGSAPAERRTLLFSATVPPAIEALA 205 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 +++Q+DA+R+ E RQH DI+YRA+ V DR++AI N LRY+ A AI+FC TRA+V Sbjct: 206 RDFQRDALRIQAMGEARQHGDIEYRAMSVTTRDREHAIFNTLRYYEASRAIIFCKTRANV 265 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + F+VVALSGELSQQERS+ALQ +RDGRARVCIATDVAARGIDLP LELVI Sbjct: 266 NHLLARMGNRGFKVVALSGELSQQERSHALQALRDGRARVCIATDVAARGIDLPGLELVI 325 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 HA+L +NP+ LLHRSGRTGRAG KG SV ++P + +RA+RL + A + W APS + Sbjct: 326 HADLPTNPDTLLHRSGRTGRAGAKGTSVLIVPSSEYKRAQRLLQRAKLVAEWGKAPSADE 385 Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437 ++ RD R+L P ++ GDE + LL + E++A+ F+R+ R G APEE++ Sbjct: 386 VQARDDARMLDHPALAEA-PGDEAGLAAALLDRFGAERVASAFVRLWREGRPAPEELS-- 442 Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497 + + R F + WF LSVG +AEARWL+P +C + GI R Sbjct: 443 ----------ESAAPAPSAPRERGEFGPAVWFLLSVGHSGRAEARWLLPKICEAGGITRD 492 Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539 +IGAIRV+ D TFV+++A ++L+ G+ ++ + GE Sbjct: 493 AIGAIRVKTDQTFVQIAAPVAPNFGERIELEPGLTMRRIEGE 534 >gi|126727015|ref|ZP_01742853.1| DEAD/DEAH box helicase-like protein [Rhodobacterales bacterium HTCC2150] gi|126703687|gb|EBA02782.1| DEAD/DEAH box helicase-like protein [Rhodobacterales bacterium HTCC2150] Length = 700 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 280/559 (50%), Positives = 380/559 (67%), Gaps = 8/559 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + +AL+ RGY LT VQEA+ P+L + D+LVSAQTGSGKTV FGLA+ S++L ++ Sbjct: 3 KTLADALAARGYETLTQVQEAVTKPELADADLLVSAQTGSGKTVGFGLAIGSSILEDDGS 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F+ A PLAL IAPTRELA+QV REL+WLY KTG V C+GG+ + ERR L GAHIV Sbjct: 63 FAQADKPLALVIAPTRELALQVKRELDWLYGKTGAKVVSCVGGMDMRDERRALARGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DHI +N++ L+AVVLDEADEMLDLGFR+D+EFIL +P++RR LMFSAT Sbjct: 123 VATPGRLRDHIMRNSMNMTELRAVVLDEADEMLDLGFREDLEFILGEAPEERRTLMFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA++YQ DAVRV +E++QHSDI+YRA++V+ D +NAIVN+LRY+ A NA+ Sbjct: 183 VPKQIARLAQSYQNDAVRVTTVAESKQHSDIEYRAMVVSARDVENAIVNVLRYYEAPNAL 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA V+R T + F VVALSGEL+Q ER++ALQ MRDGRAR+CIATDVAARGI Sbjct: 243 VFCNTRAMVNRLTTRFSNRGFSVVALSGELTQNERTHALQAMRDGRARICIATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP LELVIH +L +N E LLHRSGRTGRAGRKG+S ++P + + +A RL A V+ Sbjct: 303 DLPGLELVIHGDLPTNSETLLHRSGRTGRAGRKGVSALIVPSSQRSKANRLLGGAKVTAD 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W APS + + RD +RIL DP +L++ + + ++ L+A + E+IA ++++ Sbjct: 363 WGDAPSADEVFARDKERILADPSWLEAAEPRHVETIEALVATYSAEQIATAYMKLFAVRQ 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE++ R + G R+ F S+WFS+ G + AE R L+PML Sbjct: 423 SAPEEVSAAG--PSGGRDGGRGDKGRSGAHPREEFGPSTWFSIEGGHEAGAEPRRLLPML 480 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGGEKPDFR 544 C++ + ++ +GAIRV+ + +FVEV D V L ++K++ G ++ L + PD Sbjct: 481 CKAGNLTKEDLGAIRVRDNQSFVEVRKDSAAGFVKALGNSMKIE-GSKVTAL-DKAPDLG 538 Query: 545 GYKSSGFKSKNSQDGATKR 563 G S G + S G R Sbjct: 539 GPSSRGPARRGSSGGKFDR 557 >gi|149203654|ref|ZP_01880623.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseovarius sp. TM1035] gi|149142771|gb|EDM30813.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseovarius sp. TM1035] Length = 759 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 279/532 (52%), Positives = 371/532 (69%), Gaps = 20/532 (3%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + AL+ RGY LT VQEA+ +P L D+LVSAQTGSGKTV FGLA+A TLL DR Sbjct: 5 ALSNALAARGYETLTPVQEAVTDPALSGSDLLVSAQTGSGKTVGFGLAIAPTLLGGEDRL 64 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 PA+APLAL +APTRELA+QV REL WLYA+ G + C+GG+ ERR L+ GAHIVV Sbjct: 65 PPAAAPLALIVAPTRELALQVMRELSWLYAEAGARLVTCVGGMDARDERRALERGAHIVV 124 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRLCDHI L+++ L+A+VLDEADEMLDLGFR+D+EF+L ++P+ RR LMFSAT+ Sbjct: 125 GTPGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMFSATV 184 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I LA+ +Q+DA RV + +QH+DI Y+A+ V+ D + A++N+LRYH A+NAIV Sbjct: 185 PPMIAKLAEKFQRDAQRVTTLTGAKQHADIAYQALTVSPQDAEGAVINLLRYHDAQNAIV 244 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +TRA V+R T L+ F VV+LSGELSQ ER++ALQ MRDGRARVC+ATDVAARGID Sbjct: 245 FANTRAMVARLTARLSNRGFAVVSLSGELSQSERTHALQAMRDGRARVCVATDVAARGID 304 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 LP+L+LV+HAEL +N E LLHRSGRTGRAGRKG+S ++P +AERL + A ++ W Sbjct: 305 LPNLDLVVHAELPTNSEGLLHRSGRTGRAGRKGISALIVPLKSANKAERLLKFAKITAEW 364 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P+ E I +D +R+L DP++ ++ E LLA H PE IAA +LR++++ Sbjct: 365 TTPPTPEDIEAKDRERLLSDPVWSETPSETEGAFAAELLALHSPEVIAAAYLRLYKSRWS 424 Query: 430 APEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE++ P + R+ R F S WF+LSVG+ +AEARWL+P+L Sbjct: 425 APEELSAPGAPAPARE---------------RSAFGPSRWFALSVGNDDRAEARWLLPLL 469 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL 536 CR+ +++ +IGAIRVQ TFVE++ V ++ +LD+GI + L Sbjct: 470 CRAGNLDKSAIGAIRVQAAETFVELAEAAVPGFLSSLGEGGQLDEGITARAL 521 >gi|110678334|ref|YP_681341.1| DEAD-box ATP dependent DNA helicase [Roseobacter denitrificans OCh 114] gi|109454450|gb|ABG30655.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Roseobacter denitrificans OCh 114] Length = 705 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 281/539 (52%), Positives = 361/539 (66%), Gaps = 20/539 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + +AL+E+GY LT VQEA+ P+L + D+LVSAQTGSGKTV FGLA+A TLL E + Sbjct: 11 KTLSDALAEQGYDTLTPVQEAVTAPELAKADLLVSAQTGSGKTVGFGLAIAPTLLGEQEH 70 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F PA PLAL IAPTRELA QV REL WLYAK G VV C+GG+ ERR L GAH+V Sbjct: 71 FGPAGTPLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTERRALDRGAHVV 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRLCDHI+ + +S L+AVVLDEADEMLDLGFR+++EFILD +P RR L+FSAT Sbjct: 131 VATPGRLCDHIKRGNIELSGLRAVVLDEADEMLDLGFREELEFILDEAPTDRRTLLFSAT 190 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI LA++YQ+DA R+ SE RQH+DI+YRA+ D +NAI+N+LR++ AKNAI Sbjct: 191 VPKAIAKLAESYQRDAQRIETVSETRQHADIEYRALNTHPRDVENAIINVLRFYEAKNAI 250 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA+V+R T F VVALSGEL+Q ERSNALQ +RDGRARVC+ATDVAARGI Sbjct: 251 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAARGI 310 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S ++P ++ +A RL A + Sbjct: 311 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPPKLRTKANRLLGWAKLKAE 370 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W PS + +D R+L DPL+ ++ + +++V L ++A + ++A Sbjct: 371 WGTPPSAAEVNAQDTARLLSDPLWNATVSEEAEELVAQLAQDFSATQLAQAVVSFYQAQR 430 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE+T D D R R F S WFS+SVG AE R L+PM+ Sbjct: 431 SAPEELT--------DPTTPDDR-------PRKTFGPSVWFSVSVGRDAGAEPRTLLPMI 475 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV---SADG-VDLLRRTVKLDKGIQLKYLGGEKPDF 543 C + + IGAIR++ D +FVEV ADG V L + L+ G+ L L + PD Sbjct: 476 CNKGDMTKDDIGAIRIRQDQSFVEVLASRADGLVAALGSDMTLEAGVVLTRL-AQAPDL 533 >gi|56698644|ref|YP_169021.1| DEAD-box ATP dependent DNA helicase [Ruegeria pomeroyi DSS-3] gi|56680381|gb|AAV97047.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Ruegeria pomeroyi DSS-3] Length = 709 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 270/506 (53%), Positives = 356/506 (70%), Gaps = 14/506 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+ERG+ LT VQ+A+ +P+L D+LVSA+TGSGKTV FGLA+A TLL E + P Sbjct: 34 DALAERGFDTLTDVQQAVTDPELASADLLVSARTGSGKTVGFGLAIAPTLLGEAETLGPP 93 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +APLAL +APTRELA+QV REL WL+AK G +A CIGG+ ERR L+ GAHIVVGTP Sbjct: 94 AAPLALIVAPTRELALQVSRELTWLFAKAGGRIATCIGGMDARTERRTLERGAHIVVGTP 153 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI L+++ ++AVVLDEADEMLDLGFR+D+EF+L +P+ RR L+FSAT+SPA Sbjct: 154 GRLRDHITRGALDLADIRAVVLDEADEMLDLGFREDLEFMLGEAPEDRRTLLFSATVSPA 213 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK YQ+ A R++ RQHSDI Y+AV V+ D ++AI+N+LR+H A AIVF + Sbjct: 214 IAELAKTYQRQAARISTLGGERQHSDISYQAVQVSGGDGEHAIINLLRFHDAPTAIVFAN 273 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TRA+V+R T LA F VV+LSGELSQ ERS+ALQ MRDGRARVC+ATDVAARGIDLP+ Sbjct: 274 TRAAVARLTARLANRGFAVVSLSGELSQDERSHALQAMRDGRARVCVATDVAARGIDLPN 333 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+LVIHA+L +N E LLHRSGRTGRAGRKG+S ++P + ++A RL + A + W A Sbjct: 334 LDLVIHADLPTNTEGLLHRSGRTGRAGRKGISALIVPDKISKKASRLLKWAKIEAEWTQA 393 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432 P+ E I +D R+L DPL+ D ++ +E ++ L+ + ++IA LR++RA L APE Sbjct: 394 PTPEDILAKDEARLLADPLWTDPVEDEETRIAAGLMEQFTAQQIAVACLRLYRAKLTAPE 453 Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492 E+ + +R S F S W SLSVG +Q+AE RWL+P+LCR+ Sbjct: 454 ELN-----------QPPARGAPSVAAS---FGPSRWISLSVGREQRAEPRWLLPLLCRAG 499 Query: 493 GINRQSIGAIRVQPDLTFVEVSADGV 518 + + IG I +Q T VE++ V Sbjct: 500 NLEKSQIGKITMQAQETHVELAEAAV 525 >gi|153007483|ref|YP_001368698.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151559371|gb|ABS12869.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC 49188] Length = 644 Score = 541 bits (1395), Expect = e-152, Method: Compositional matrix adjust. Identities = 294/608 (48%), Positives = 395/608 (64%), Gaps = 55/608 (9%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + E I + AL+ RGY LT+VQ A+L P+ + D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPETIAPALSGALAARGYNTLTAVQNAVLAPETLDADLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L RFS A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEGELRFSDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRL DHI L++S L+AVVLDEADEMLD+GFR+D+EFIL +PK R Sbjct: 121 LERGAHIVVGTPGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFILGEAPKDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q DA+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNDALRLTVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NPE +LHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPNNPETMLHRSGRTGRAGRKGTCVLVVPFSRRRTAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + + ++ L ++ PE+IAA F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQDLLKALTERYTPEQIAAAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSG---RDRFRDDSRAFKVGGGSR--------------- 460 L A A EE++ PV V G RDRF R+ + G R Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRDRFEKGERSDR---GDRFERGERRERGEPGER 477 Query: 461 ----DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +F G WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A Sbjct: 478 FDRNASFDG-VWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEITAS 536 Query: 517 GVDLLRRTVKL----DKGIQLKYL--------------GGEKP--------DFR-GYKSS 549 D RR+V+ +KG+ ++ GG KP FR GYKS Sbjct: 537 KADEFRRSVEERGTGEKGLVIRTAVAGAGGDAAPREGKGGFKPRGDKSKEGGFRDGYKSD 596 Query: 550 GFKSKNSQ 557 G+K S+ Sbjct: 597 GYKGDRSK 604 >gi|254473911|ref|ZP_05087305.1| dead-box ATP-dependent rna helicase 53 [Pseudovibrio sp. JE062] gi|211957021|gb|EEA92227.1| dead-box ATP-dependent rna helicase 53 [Pseudovibrio sp. JE062] Length = 607 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 272/526 (51%), Positives = 359/526 (68%), Gaps = 13/526 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M I E + + AL +R Y +LT VQ A+L+ +L+ KD+LVSAQTGSGKTVAFG+A+A Sbjct: 1 MTIPEGVSPALSTALEKREYTSLTPVQTAVLDEELKGKDLLVSAQTGSGKTVAFGIAIAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 LL + +R A+ PLAL +APTRELA+QV +ELEWLY + G + C+GG+ + RERR+ Sbjct: 61 ELLGDEERMGRANEPLALCVAPTRELAIQVSKELEWLYGEAGARITTCVGGMDMRRERRN 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L GAHIVVGTPGRL DHI + S L+ VVLDEADEMLDLGFR+D+EFILD++P++R Sbjct: 121 LSAGAHIVVGTPGRLRDHIERGSFDTSALRTVVLDEADEMLDLGFREDLEFILDAAPEER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R L+FSAT+ P I +LAK +Q+DA R++ + QH+DI+YRA+ VA +DR+NAI+N+LR Sbjct: 181 RTLLFSATVPPQIESLAKRFQRDAQRISTVTNREQHADIEYRAMQVAPNDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ A+N I+FC TR V + L F VVALSGELSQ ER++AL MR+GRARVC+A Sbjct: 241 FYEAQNTIIFCGTREMVKHLSARLGNRGFAVVALSGELSQAERNHALGAMRNGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +N E LLHRSGRTGRAGRKG+ V+P +R A RL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPNNAETLLHRSGRTGRAGRKGVCTLVVPHTRRRSATRLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A V W PAP+ + IR++D +RIL ++ ++ MV LL K PE+IAA + Sbjct: 361 GFAKVKAEWGPAPTAQQIRDKDRERILASTDLQEAPSEEDLPMVQELLEKFTPEQIAAAY 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 +R GL APEE+ S F D R R +F WF L+VG K AE Sbjct: 421 MRQIHQGLPAPEELLASS-------FEDRERK------PRKDFDNGVWFRLNVGRKHNAE 467 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 RWL+PM+CR+ I ++ IG+IR+ + E+ A D + TVK Sbjct: 468 PRWLLPMICRAGHITKKDIGSIRIFDADSRFELDAKLADKFQETVK 513 >gi|86747306|ref|YP_483802.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2] gi|86570334|gb|ABD04891.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2] Length = 679 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 290/590 (49%), Positives = 376/590 (63%), Gaps = 29/590 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + AL+ER Y T VQ A+L PD +D+LVSAQTGSGKTVA+GLA+A LL Sbjct: 3 FSTTLPPLARALAERHYSEATPVQSAVLAPDAAGRDLLVSAQTGSGKTVAYGLAIAPDLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E +RF PA+APLAL +APTRELA+QV REL WLY TG V C+GG+ RE+R+L Sbjct: 63 GEAERFEPAAAPLALIVAPTRELALQVHRELGWLYGATGARVVSCVGGMDPRREQRELAE 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+R L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P RR L Sbjct: 123 GAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPDSRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LAK YQ +A RV +A H+DI+YRA+ +A +D ++A+VN LRY Sbjct: 183 LFSATLPRGIIALAKTYQHNAFRVEVAGREGGHADIEYRAIRIAPNDVEHAVVNTLRYVE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVFC+TR+ V+ L E F VVALSGEL+Q ER+NAL +RDGRARVC+ATDV Sbjct: 243 SPTAIVFCATRSGVTHLQTALLERGFSVVALSGELTQNERTNALNALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP+L LVIHA+L ++PE + HRSGRTGRAG+KG+SV ++P +RRAE L A Sbjct: 303 AARGIDLPNLGLVIHADLPNDPEVMQHRSGRTGRAGKKGISVLLVPPARRRRAESLLGLA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + +W AP + IR D QR++QD LF + D++ + LLA+ E+IA R+ Sbjct: 363 GIEAIWGTAPQADEIRVLDQQRMMQDALFTEETTPDDQALAQALLAERSAEEIAVALARL 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDD----------------------SRAFKVGGGSRD 461 +RA L APE+I R RDD SRA G + Sbjct: 423 YRARLPAPEDILDPGERPARG--RDDRAPAKGARAPREERDYGPRDPGSRARPGKAGQKH 480 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 WF ++G ++ AEARWL+PM+CR GI+RQ+IGAIR+ T E++A Sbjct: 481 AITDGVWFRAAIGKRKNAEARWLLPMICRRGGIDRQAIGAIRILDTTTEFEIAAAAAVDF 540 Query: 522 RRTVKL---DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ--DGATKRFKR 566 +K D I+++ L G KP G + + K Q + T+R KR Sbjct: 541 AAQIKRPDKDDNIRIEPLIGAKPIEAGAERALSKPHGGQLSERETRRSKR 590 >gi|99080431|ref|YP_612585.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040] gi|99036711|gb|ABF63323.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040] Length = 710 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 280/547 (51%), Positives = 375/547 (68%), Gaps = 19/547 (3%) Query: 4 FENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +E P +I +AL RGY +LT VQEA+ NP+L D+LVSAQTGSGKTV FGLA+A Sbjct: 3 YERTPHLIPTLQQALERRGYTSLTPVQEAVSNPELAGADLLVSAQTGSGKTVGFGLAIAP 62 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L E+ F A++PLAL IAPTRELA+QV REL WLY G V+A C+GG+ + ERR Sbjct: 63 TILGEDGTFERAASPLALVIAPTRELALQVKRELSWLYGDAGAVLASCVGGMDMRDERRA 122 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVV TPGRL DHI +++S + AVVLDEADEMLDLGFR+D+EFIL+ +P+ R Sbjct: 123 LERGAHIVVATPGRLRDHITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDR 182 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+S I LA+ YQ DA R++ +++ QHSDI Y A +VA D +NAI+N+LR Sbjct: 183 QTLLFSATVSKPIAALAQTYQNDAQRISTINKSEQHSDISYLAHVVAPHDIENAIINVLR 242 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +H A NAIVF +TRA+V+R L+ FQVVALSGELSQ ER+ ALQ MRDGRAR+C+A Sbjct: 243 FHEAPNAIVFANTRAAVNRLLTRLSNRGFQVVALSGELSQSERAGALQAMRDGRARICVA 302 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LV+HA+L S+ E LLHRSGRTGRAGRKG S ++ R+AERL Sbjct: 303 TDVAARGIDLPNLDLVVHADLPSSHETLLHRSGRTGRAGRKGASALMVTPRSVRKAERLL 362 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 REA +S W APS + +R RD +R+L D ++ + +++ + L+ PE++AAG+ Sbjct: 363 REAKLSAEWIDAPSADEVRGRDLERMLSDTVWTEEAPESQQETLAKLVESFSPEQLAAGY 422 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 LR+ A APEE+T V+ + R + D R F S WF++ G A+ Sbjct: 423 LRLWSAARSAPEELTDVAAMDTRKKKED-----------RAPFGPSVWFAIDGGRDAGAD 471 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYL 536 R L+PMLC++ GI++ +IGAIR+ D ++ E++ D V+ T + LD G L+ L Sbjct: 472 PRRLLPMLCKAGGIDKTAIGAIRIVGDKSYAEIAEDKVEGFMATLGGEMALDDGSALERL 531 Query: 537 GGEKPDF 543 E P+ Sbjct: 532 -SEAPNL 537 >gi|239830975|ref|ZP_04679304.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium LMG 3301] gi|239823242|gb|EEQ94810.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium LMG 3301] Length = 641 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 286/594 (48%), Positives = 391/594 (65%), Gaps = 35/594 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + E I + AL+ RGY LT+VQ A+L + + D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPETIAPALSGALAARGYNTLTAVQNAVLASETLDADLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRL DHI L++S L+AVVLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGAHIVVGTPGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFILGEAPENR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q DA+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNDALRLTVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NPE +LHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPNNPETMLHRSGRTGRAGRKGTCVLVVPFSRRRTAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F S++ + + ++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQGKTNERILNAEVFNQSVEEEYQDLLKALTERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSG---RDRF-------RDDSRAFKVGGGSRDNFKGSS- 467 L A A EE++ PV V G RDRF R D + G + F ++ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRDRFEKGERSDRGDRFERRDRGEPGERFDRNAQ 480 Query: 468 ----WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D RR Sbjct: 481 FDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEITASKADEFRR 540 Query: 524 TVKL----DKGIQLKYL--------------GGEKPDFRGYKSSGFKSKNSQDG 559 +V+ +KG+ ++ GG KP +K GF+ DG Sbjct: 541 SVEERGTGEKGLVIRTAVAGAGGDAAPREGKGGFKPRGDKFKEGGFRDGYKSDG 594 >gi|260574445|ref|ZP_05842449.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] gi|259023341|gb|EEW26633.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] Length = 829 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 272/522 (52%), Positives = 363/522 (69%), Gaps = 14/522 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +GY LT VQ+A+L+ D+ +D+LVSAQTGSGKTVAFG+A+A LL DR A P+A Sbjct: 17 KGYETLTPVQDAVLSGDVTGRDLLVSAQTGSGKTVAFGIAIADELLRGADRLLFADTPMA 76 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L IAPTRELA+QV REL+WLYA+TG ++A C+GG+ E+R L GAHIVVGTPGRL D Sbjct: 77 LIIAPTRELALQVARELDWLYAETGAIIATCVGGMDYRTEKRALDRGAHIVVGTPGRLRD 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI + L++S L+A VLDEADEMLDLGFR+D+EFIL ++P +RR LMFSAT+ AI LA Sbjct: 137 HIERRSLDLSGLRAAVLDEADEMLDLGFREDLEFILQAAPAERRTLMFSATVPKAIAELA 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 K++Q +A+R+ A E RQH DI+YRA+ V+ DR++AI N+LR++ A++AIVFC TR +V Sbjct: 197 KDFQNNALRLQTAGEARQHVDIEYRALNVSTRDREHAIFNLLRFYEARSAIVFCKTRVAV 256 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP L+LVI Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQSLRDGRARVCIATDVAARGIDLPGLDLVI 316 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 HA+L SN E LLHRSGRTGRAG KG+S ++ R+A+RL + A V W APS + Sbjct: 317 HADLPSNSEVLLHRSGRTGRAGSKGVSALIVTPAEFRKAQRLLQGAKVVAEWAKAPSADE 376 Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437 ++ RD R+L+ P+ + + G+E ++ LL + E++A+ F+R+ R G APEE+ Sbjct: 377 VQMRDDARVLEHPVLM-APAGNEAEIAATLLERFGAEQVASAFVRLWREGRSAPEELQ-- 433 Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497 D+ A R F S WF+LSVG +AEARWL+P +C GI + Sbjct: 434 -----------DANAAPSAARERTEFGESVWFALSVGRSGRAEARWLLPKICDGGGITKN 482 Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539 IGAIRVQ D TFV+++ + +L+ G+ ++ + GE Sbjct: 483 EIGAIRVQEDETFVQIAKPVASRFGASFELESGVVMRRMEGE 524 >gi|118589362|ref|ZP_01546768.1| ATP-DEPENDENT RNA HELICASE DEAD [Stappia aggregata IAM 12614] gi|118438062|gb|EAV44697.1| ATP-DEPENDENT RNA HELICASE DEAD [Stappia aggregata IAM 12614] Length = 697 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 280/533 (52%), Positives = 375/533 (70%), Gaps = 13/533 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 RGY NLTSVQE++L+ E D+LVSAQTGSGKTVAFGLALA TLL D A AP+A Sbjct: 18 RGYENLTSVQESVLSDAPPEADLLVSAQTGSGKTVAFGLALAPTLLDGKDTLGQAGAPIA 77 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 LAIAPTRELA+QV EL WLY + G V A C+GG+ ERR L+ G HIVVGTPGRL D Sbjct: 78 LAIAPTRELALQVKEELTWLYNEAGAVTASCVGGMDPRMERRTLERGVHIVVGTPGRLRD 137 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI L++S +KAVVLDEADEMLD+GFR+D+EFILD++P+ RR LMFSAT+ I LA Sbjct: 138 HIERGALDLSEIKAVVLDEADEMLDMGFREDLEFILDAAPQDRRTLMFSATVPRQIAELA 197 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 K +QKDAVR++ + QH DIDY A VA ++R+NAI+N+LR H A+ AIVFCSTR +V Sbjct: 198 KRFQKDAVRLSTINAREQHGDIDYVAHPVAPNERENAIINVLRQHEAEKAIVFCSTREAV 257 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 SR T LA F +V+LSGELSQ++RS+AL M+DGRARVC+ATDVAARGIDLP+L+LVI Sbjct: 258 SRLTSRLANRGFSIVSLSGELSQEQRSSALAAMKDGRARVCVATDVAARGIDLPNLDLVI 317 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 HA+L + LLHRSGRTGRAGRKG V ++P +R+AER+ + A ++ W+ AP+ + Sbjct: 318 HADLPTGKAALLHRSGRTGRAGRKGTCVLMVPFPRRRQAERVLQFAGITATWKGAPTADD 377 Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437 IR +D +R+L DP ++ +E + + LLA H PE++AA F+++ ++ L APEE++ V Sbjct: 378 IRAKDKERLLADPALKVELEEEELAIANELLALHSPEQLAAAFVKLRQSRLPAPEEVSDV 437 Query: 438 SLVS--GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGIN 495 S GRD R ++ G F+ WFSLS+G +Q+AE RW++PM+CR+ + Sbjct: 438 DETSLRGRDAGSRGGRTAEITG----KFEDGIWFSLSLGHRQRAEPRWILPMICRAGHVT 493 Query: 496 RQSIGAIRV-QPDLTFVEVSADG---VDLLRRTVKLDKGIQLKYL---GGEKP 541 ++ +GAI++ Q +L F + G D+++R ++ +K L GG+ P Sbjct: 494 KKEVGAIKIFQNELYFEIAGSHGQRFADVVKREGTGEENATIKLLDARGGKIP 546 >gi|312115353|ref|YP_004012949.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100] gi|311220482|gb|ADP71850.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 570 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 279/571 (48%), Positives = 378/571 (66%), Gaps = 22/571 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 + +P + EAL+++GY LT VQ A+L D+ E D+LVSAQTGSGKTVAFGLA+ASTLL Sbjct: 3 IDGVPPLFAEALAKQGYTTLTDVQRAVLEEDVGESDLLVSAQTGSGKTVAFGLAMASTLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 DRF S PLA+ +APTRELA+QV ELEWLYA G +A C+GG+ + +ERR L Sbjct: 63 RGEDRFPANSEPLAVLVAPTRELALQVRLELEWLYAPAGARIASCVGGMDMRQERRSLAG 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRL DHI L+++ ++A+VLDEADEMLDLGFR+D+EFIL ++P +RR L Sbjct: 123 GAHIVVGTPGRLRDHITRGSLDMASVRAMVLDEADEMLDLGFREDLEFILKAAPPERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT++ I TLA+ +QK+A+R++ + QH++IDYRAV VA +R+NA++N+LR+ Sbjct: 183 MFSATVAKPIETLARRFQKNAIRISANTGATQHANIDYRAVAVASGERENAVINVLRFFE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A +A VFC+TR V L F VVALSGELSQ ER+ LQ MRDGRA+VC+ATDV Sbjct: 243 ASSAFVFCTTREGVKHLASRLGNRGFGVVALSGELSQTERTRGLQAMRDGRAQVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 A+RGIDLP L+LVIHA+L + E LLHRSGRTGRAGR G+SV + P + +R ++L + A Sbjct: 303 ASRGIDLPTLDLVIHADLPKDGEALLHRSGRTGRAGRSGVSVLITPHSKRRTVDKLLQAA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 V V W P PS E I +RD +R++ DP + +E LLA PE+IAA F R Sbjct: 363 KVKVSWMPVPSAETIIQRDRERLMNDPSLEGPLTDEEADFARDLLATKSPEQIAAAFFRQ 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 ++ PEE + SGRD ++ R +F+G WF +SVG KQ+AE RW Sbjct: 423 NQTRRPTPEEF----VDSGRDASEVEA--------PRGDFEGGVWFRVSVGRKQRAEPRW 470 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGE 539 ++P++C++ + + IGAI++ + EVSA D L +T + D I + + G Sbjct: 471 ILPLICKAGDVTSREIGAIQILEGESMFEVSARAAPDFTRALAQTGRRDDTITIVPMNG- 529 Query: 540 KPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570 +P+ R + +S GA KR ++ GA Sbjct: 530 RPEPRASYADSPRS-----GAMKRSRKMPGA 555 >gi|89054065|ref|YP_509516.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1] gi|88863614|gb|ABD54491.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1] Length = 706 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 273/511 (53%), Positives = 355/511 (69%), Gaps = 16/511 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + AL +GY LT VQ+A+ +PDL KD+LVSAQTGSGKT+ FGLA+A L E + Sbjct: 3 QALQTALDAQGYDTLTPVQQAVTDPDLTGKDLLVSAQTGSGKTLGFGLAIAPQLFGEAEA 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F A APLAL IAPTRELA+QV REL WL+A+ G +A +GG+ + ERR L GAHIV Sbjct: 63 FGAAGAPLALVIAPTRELAMQVKRELSWLFAQAGATLASTVGGMDMRDERRALARGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DHI +++S LKAVVLDEADEMLDLGFR+D+EFILD+SP R+ LMFSAT Sbjct: 123 VATPGRLKDHIMRGSIDLSSLKAVVLDEADEMLDLGFREDLEFILDTSPADRQTLMFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI LA+NYQKDAVRV + +QHSDI+YRA+ V+ D +NAI+N+LR++ A NAI Sbjct: 183 VPAAIARLAQNYQKDAVRVATTTGEKQHSDIEYRALTVSARDGENAIINVLRFYEAPNAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA+V+R T L+ F VVALSGEL+Q ER+NALQ MRDGRARVC+ATDVAARGI Sbjct: 243 VFCNTRATVNRMTTRLSNRGFSVVALSGELTQSERTNALQAMRDGRARVCVATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+LELVIHAEL +N + LLHRSGRTGRAGRKG+S ++P +++A+RL A ++ V Sbjct: 303 DLPNLELVIHAELPTNQDTLLHRSGRTGRAGRKGVSALIVPPAARKKAQRLLGWAKLTAV 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W APS + + RD R+++D + +Q ++ VD L+ K+ E++A+ F+R++R Sbjct: 363 WAEAPSADEVTARDDARMMEDADWDAEVQDSNREAVDKLVDKYSAEQLASAFVRMYREKR 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE++ S R F S WFSL+ G AE R L+PML Sbjct: 423 SAPEELSDAS----------------AAPEPRKAFGPSVWFSLAGGQAVGAEPRRLLPML 466 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 C+ I R +GAIR+ + +F+E+ VD Sbjct: 467 CKMGNITRDDVGAIRIHHEASFIELRESAVD 497 >gi|259418800|ref|ZP_05742717.1| ATP-dependent rna helicase, dead/deah box family [Silicibacter sp. TrichCH4B] gi|259345022|gb|EEW56876.1| ATP-dependent rna helicase, dead/deah box family [Silicibacter sp. TrichCH4B] Length = 681 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 276/541 (51%), Positives = 374/541 (69%), Gaps = 17/541 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP + +AL RGY +LT VQEA+ +P+L D+LVSAQTGSGKTV FGLA+A T+L E+ Sbjct: 2 IP-TLQQALERRGYTSLTPVQEAVSDPELAGADLLVSAQTGSGKTVGFGLAIAPTILNED 60 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +F A++PLAL IAPTRELA+QV REL WLY G V+A C+GG+ + ERR L+ GAH Sbjct: 61 GQFERAASPLALVIAPTRELALQVKRELSWLYGDAGAVLASCVGGMDMRDERRALERGAH 120 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL DHI +++S + AVVLDEADEMLDLGFR+D+EFIL+ +P+ R+ L+FS Sbjct: 121 IVVATPGRLRDHITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDRQTLLFS 180 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+S I LA+ YQ DA R++ +++ QHSDI Y + +VA D +NAI+N+LR+H A N Sbjct: 181 ATVSKPIAALAQTYQNDAQRISTINKSEQHSDISYFSHVVAPHDIENAIINVLRFHEAPN 240 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF +TRA+V+R L+ FQVVALSGELSQ ER+ ALQ MRDGRAR+C+ATDVAAR Sbjct: 241 AIVFANTRAAVNRLLTRLSNRGFQVVALSGELSQSERAGALQAMRDGRARICVATDVAAR 300 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GIDLP+L+LV+HA+L S+ E LLHRSGRTGRAGRKG S ++ R+AERL R+A +S Sbjct: 301 GIDLPNLDLVVHADLPSSHETLLHRSGRTGRAGRKGASALMVTPRSVRKAERLLRDAKLS 360 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 W APS + +R RD +R+L D ++ + +++ + L+ PE++AAG+LR+ A Sbjct: 361 AEWVDAPSADEVRGRDLERMLSDTVWTEEAPESQQETLAKLVESFSPEQLAAGYLRLWSA 420 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 APEE+T V+ + R + D R F S WF++ G A+ R L+P Sbjct: 421 ARSAPEELTDVAAMDTRKKKED-----------RAPFGPSVWFAIEGGRDAGADPRRLLP 469 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGEKPD 542 MLC++ GI++ +IGAIR+ D ++ E++ D V+ T + LD G L+ L E P+ Sbjct: 470 MLCKAGGIDKTAIGAIRIVGDKSYAEIAEDKVEGFMATLGGDMALDDGSALERL-NEAPN 528 Query: 543 F 543 Sbjct: 529 L 529 >gi|91977685|ref|YP_570344.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5] gi|91684141|gb|ABE40443.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5] Length = 691 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 288/594 (48%), Positives = 380/594 (63%), Gaps = 37/594 (6%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P + AL+ER Y+ T VQ A+L P+ +D+LVSAQTGSGKTVA+GLA+A LL Sbjct: 3 FLTTPPPLARALAERNYLEATPVQSAVLAPEAAGRDLLVSAQTGSGKTVAYGLAIARDLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +++RFS A+APLAL +APTRELA+QV REL W+Y G V C+GG+ RE+R+L Sbjct: 63 GDSERFSSAAAPLALIVAPTRELALQVHRELGWVYGYAGARVVSCVGGMDPRREQRELAE 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+R L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P RR L Sbjct: 123 GAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPATRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LAK YQ DA R+ + H+DI+YRA+ +A SD ++A+VN LR+ Sbjct: 183 LFSATLPRGIIALAKTYQHDAFRIEVEGREGGHADIEYRAMRIAPSDVEHAVVNTLRFVE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +AIVFC+TR +V+ L E F VVALSGEL+Q ER+ AL +RDGRARVC+ATDV Sbjct: 243 SPSAIVFCNTRNAVNHLQTSLLERGFSVVALSGELTQNERTQALNSLRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP+L LVIHA+L ++PE + HRSGRTGRAG+KG+SV ++P +RRAE L A Sbjct: 303 AARGIDLPNLGLVIHADLPNDPEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAELLLNLA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + +W AP + IR D QR+ QD LF D I +++ + VLLA+ E+IA R+ Sbjct: 363 GIEAIWGTAPQADEIRVLDQQRMTQDTLFTDEISPEDQALAQVLLAERTAEEIAIALARL 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG---------GSRDN------------ 462 +RA L +PE+I + R R D RA G G RD+ Sbjct: 423 YRARLPSPEDILDPGQANARGR---DDRASPKGARAPREERDYGPRDSGPRARSAKAGQK 479 Query: 463 --FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520 WF ++G ++ AEARWL+PM+CR GI+RQ+IGAIR+ T E++A + Sbjct: 480 HAMTDGVWFRAAIGKRKNAEARWLLPMICRRGGIDRQAIGAIRILDTTTEFEIAAFAAED 539 Query: 521 LRRTVK---LDKGIQLKYLGGEKP-----DFRGYKSSGFKSKNSQDGATKRFKR 566 +K D I+++ L G KP D YK K + T+R KR Sbjct: 540 FAAQIKRPDKDDNIRIEPLIGAKPIEPAADKPAYKPHDGKKSERE---TRRSKR 590 >gi|304320267|ref|YP_003853910.1| hypothetical protein PB2503_03462 [Parvularcula bermudensis HTCC2503] gi|303299169|gb|ADM08768.1| hypothetical protein PB2503_03462 [Parvularcula bermudensis HTCC2503] Length = 623 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 278/562 (49%), Positives = 367/562 (65%), Gaps = 19/562 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + AL+ +GY +LT VQ A+L+ + +D+LVSAQTGSGKTVAFGLA+ L+ Sbjct: 9 GLPAPLSRALTAKGYDSLTEVQSAMLDEGVSGRDLLVSAQTGSGKTVAFGLAMGPDLMRG 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R PLAL +APTRELA+QV RE+ WLYA+TG VA C+GG+ + RER+ L GA Sbjct: 69 QARLPRGGVPLALVVAPTRELAMQVAREITWLYAETGATVATCVGGMDLRRERQALDRGA 128 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL DHI L++S L+ +LDEADEML LGFR ++E ILD+ + RR LMF Sbjct: 129 HIVVGTPGRLVDHISRDALDLSALRVAILDEADEMLKLGFRQELEAILDACAEDRRTLMF 188 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA YQ+DA+R++ + R H DI Y+A++ + D + AI+N LR+H A+ Sbjct: 189 SATVGGGIGKLAAQYQRDALRISASGPARSHDDIAYKAMVTSQHDAEKAIINTLRFHEAE 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 NAIVFC TRA+V+R T LA F VV+LSGELSQQER+NALQ MRDGRARVC+ATDVAA Sbjct: 249 NAIVFCGTRAAVARLTSRLANRGFSVVSLSGELSQQERTNALQAMRDGRARVCVATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGIDLP LELVIHA+L + E LLHRSGRTGRAGRKG SV V+P +RR E+LFR+A V Sbjct: 309 RGIDLPGLELVIHADLPKDREGLLHRSGRTGRAGRKGTSVLVVPPRARRRVEQLFRDAKV 368 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 W PS EA+ RD R+L DP+ + G+ + L + E +A F+R+HR Sbjct: 369 DADWIAPPSAEAVLARDDARLLSDPILNEG--GEADSLAQTLAEAYSAEHLAGAFIRLHR 426 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485 APEEI+ +++V K G R +W LSVG +AE RWL+ Sbjct: 427 QNRSAPEEISELAVV---------PPGVKKG---RTETTDGAWVMLSVGRAHRAEPRWLL 474 Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKP 541 PMLC+S+ + + SIGAIRV+ T+V++ +AD ++ L L+ GI+++ G P Sbjct: 475 PMLCKSAPVPKGSIGAIRVRETETYVQLDKEGAADFLNSLGTVGYLEDGIEVRRTDG-PP 533 Query: 542 DFRGYKSSGFKSKNSQDGATKR 563 D G + + + G T+R Sbjct: 534 DKEGPREAAVPVTRPRKGRTQR 555 >gi|254464595|ref|ZP_05078006.1| RNA helicase DeaD [Rhodobacterales bacterium Y4I] gi|206685503|gb|EDZ45985.1| RNA helicase DeaD [Rhodobacterales bacterium Y4I] Length = 678 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 279/539 (51%), Positives = 363/539 (67%), Gaps = 16/539 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + AL ERGY LT VQEA+ PD+ +D+LVSAQTGSGKTV FGLALA LL E++ Sbjct: 3 QALANALQERGYETLTQVQEAVTQPDVEGRDLLVSAQTGSGKTVGFGLALAQDLLGEDES 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F A+APLAL IAPTRELA+QV EL WLY + G V+A C+GG+ + ERR L GAHIV Sbjct: 63 FGEAAAPLALVIAPTRELALQVKHELSWLYREAGAVIASCVGGMDMRDERRALARGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DHI +++S ++ VVLDEADEMLDLGFR+D+EFIL +P+ RR L+FSAT Sbjct: 123 AATPGRLRDHIARGSIDLSQVRGVVLDEADEMLDLGFREDLEFILGEAPEDRRTLLFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + PAI +LA+ +Q+DA+R+ A E +QH+DI+YR + VA +D +NAI+N+LRY+ A +AI Sbjct: 183 VPPAIASLAEAFQRDAMRIKTAGETKQHADIEYRLMNVAQADAENAIINVLRYYEAPSAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF +TRA+V+R L+ VV LSGELSQ ERS+ALQ MRDGRARVC+ATDVAARGI Sbjct: 243 VFANTRAAVNRLAARLSNRGLPVVTLSGELSQTERSHALQAMRDGRARVCVATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP LELV+HAEL SN E LLHRSGRTGRAGRKG+S + P + +A RL + A ++ Sbjct: 303 DLPGLELVVHAELPSNHETLLHRSGRTGRAGRKGVSALIAPPKARAKALRLLKWAKLTAE 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 APS + + RD +R+L DP++ ++ +E+ V LL E+IAA +LR+ R+ Sbjct: 363 HCEAPSADDVLARDEERMLADPVWQQPVEENEQAGVRTLLDNFSAEQIAATYLRLFRSRH 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APE++ P + R F S WFSLS G + A+ R ++PML Sbjct: 423 SAPEDLRPAGEEE-----------PRKERKERKAFGPSVWFSLSGGHEAGADPRKVLPML 471 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYLGGEKPDF 543 C++ I+R +IGAIRVQ + TF E+S VD L +L+ G L L E PD Sbjct: 472 CKAGNIDRDAIGAIRVQDNETFAEISEGAVDGFLKALDGKTELEPGAVLTRL-SEAPDL 529 >gi|306844397|ref|ZP_07476987.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1] gi|306275210|gb|EFM56960.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1] Length = 626 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 277/592 (46%), Positives = 385/592 (65%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F+ ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFIQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|254504723|ref|ZP_05116874.1| DbpA RNA binding domain family [Labrenzia alexandrii DFL-11] gi|222440794|gb|EEE47473.1| DbpA RNA binding domain family [Labrenzia alexandrii DFL-11] Length = 722 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 268/533 (50%), Positives = 369/533 (69%), Gaps = 13/533 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 RGY LT VQE++L D+LVSAQTGSGKTVAFGLALAST+L E + AP+A Sbjct: 41 RGYETLTPVQESVLTEAPANADLLVSAQTGSGKTVAFGLALASTILGEEETLGKPGAPIA 100 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 LAIAPTRELA+QV EL WLY + G V A C+GG+ ERR L G HIVVGTPGRL D Sbjct: 101 LAIAPTRELALQVKEELTWLYGEAGAVTASCVGGMDPRMERRTLDRGVHIVVGTPGRLRD 160 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI L++S L+AVVLDEADEMLD+GFR+D+EFILD++P+ RR LMFSAT+ I LA Sbjct: 161 HIERGALDLSELRAVVLDEADEMLDMGFREDLEFILDAAPENRRTLMFSATVPKPIAELA 220 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 K +QKDAVR++ + QH DIDY A VA ++R+NAI+N+LR H A+ AIVFC TR V Sbjct: 221 KRFQKDAVRLSTINAREQHVDIDYIAHPVAPNERENAIINVLRLHEAEKAIVFCQTREGV 280 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 SR T LA F++V+LSGELSQ++R+ AL M++G ARVC+ATDVAARGIDLP+L+LVI Sbjct: 281 SRLTARLANRGFRIVSLSGELSQEQRTAALTAMKNGTARVCVATDVAARGIDLPNLDLVI 340 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 HA+L + LLHRSGRTGRAGRKG V ++P +R+AER AN++ W+ AP+ + Sbjct: 341 HADLPTGKAALLHRSGRTGRAGRKGTCVLMVPFPRRRQAERTLHFANITATWKGAPTSDE 400 Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437 IR +D +R+L DP+ ++ +E+ + LLA H E++AA F+++ ++ L APEE+ + Sbjct: 401 IRAKDKERLLADPVLSAELEEEERVIAGELLALHSAEQLAAAFVKLRQSRLPAPEEVGEL 460 Query: 438 --SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGIN 495 + + GRD R+ ++ ++NF+ WFSLS+G +Q+AE RW++P++CR+ + Sbjct: 461 NETALQGRDAGSRGGRSAEI----KNNFEDGVWFSLSLGHRQRAEPRWILPLICRAGHVT 516 Query: 496 RQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL----DKGIQLKYL---GGEKP 541 ++ +GAI++ + + E+S + TVK ++ + +K L GG+ P Sbjct: 517 KKEVGAIKIFQNELYFEISGKHGEKFASTVKREGTGEENVTIKLLDARGGQMP 569 >gi|149913402|ref|ZP_01901935.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. AzwK-3b] gi|149812522|gb|EDM72351.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. AzwK-3b] Length = 662 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 270/510 (52%), Positives = 351/510 (68%), Gaps = 16/510 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + AL +GY +LT+VQEA+ P+L KD+LVSAQTGSGKT+ FGLA+A L E + Sbjct: 3 QALANALKAQGYTSLTAVQEAVSAPELAGKDLLVSAQTGSGKTLGFGLAIAPGLFGEAES 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F PA+APLAL IAPTRELA+QV REL WL+ + V+A +GG+ + ERR L+ GAHIV Sbjct: 63 FGPAAAPLALVIAPTRELALQVKRELAWLFGQANAVLASTVGGMDMRDERRALERGAHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DHI +++S LKAVVLDEADEMLDLGFR+D+EFIL+ +P +R+ L+FSAT Sbjct: 123 VATPGRLRDHIMRGSIDLSALKAVVLDEADEMLDLGFREDLEFILEQAPIERQTLLFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI LA NYQKDA+R++ AS QH+DI+YRA+ V+ D +NAI+N+LRY+ A NAI Sbjct: 183 VPAAIAKLASNYQKDAIRISTASGTTQHADIEYRALNVSARDAENAIINVLRYYEAPNAI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA V+R T L+ F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI Sbjct: 243 VFCNTRAMVNRLTTRLSNRSFSVVALSGELSQSERTHALQAMRDGRARVCVATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+LELVIHAEL +N + LLHRSGRTGRAGRKG+S ++P +++A+RL A V Sbjct: 303 DLPNLELVIHAELPTNQDTLLHRSGRTGRAGRKGVSALIVPPAARKKAQRLLGWAKVKAE 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W APS + + RD +R+L + I+ + V L + E++AA F+R+ R Sbjct: 363 WADAPSADEVTARDDERMLAGTEWDAEIEDSNRATVAKLTERFSAEQLAAAFVRLFRERH 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE++ VS R F S WFS+ G AE R L+PML Sbjct: 423 SAPEELSDVSAPP----------------EPRAAFGPSVWFSVEGGRAAGAEPRRLLPML 466 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 C+ ++R+ IGAIR+Q D++ VE+ V Sbjct: 467 CKIGALSREDIGAIRIQNDVSLVEIRQSAV 496 >gi|326408143|gb|ADZ65208.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis M28] Length = 626 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 278/592 (46%), Positives = 386/592 (65%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL---------GGE----------KPDFRGYKSSGFKSKNSQD 558 ++G K L GG+ KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVTGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|225851664|ref|YP_002731897.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis ATCC 23457] gi|256264826|ref|ZP_05467358.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9] gi|225640029|gb|ACN99942.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis ATCC 23457] gi|263095281|gb|EEZ18908.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9] Length = 626 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 278/592 (46%), Positives = 386/592 (65%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL---------GGE----------KPDFRGYKSSGFKSKNSQD 558 ++G K L GG+ KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVTGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKTD 591 >gi|256112630|ref|ZP_05453551.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 3 str. Ether] gi|265994071|ref|ZP_06106628.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262765052|gb|EEZ10973.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 626 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 S-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|254700936|ref|ZP_05162764.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 5 str. 513] gi|261751452|ref|ZP_05995161.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] gi|261741205|gb|EEY29131.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] Length = 626 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVYPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|148559538|ref|YP_001258161.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840] gi|256368588|ref|YP_003106094.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti CCM 4915] gi|148370795|gb|ABQ60774.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis ATCC 25840] gi|255998746|gb|ACU47145.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti CCM 4915] Length = 626 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|254690433|ref|ZP_05153687.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 6 str. 870] gi|256258685|ref|ZP_05464221.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 9 str. C68] gi|260755981|ref|ZP_05868329.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260885002|ref|ZP_05896616.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297247521|ref|ZP_06931239.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196] gi|260676089|gb|EEX62910.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260874530|gb|EEX81599.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297174690|gb|EFH34037.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196] Length = 626 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|17988107|ref|NP_540741.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str. 16M] gi|256045915|ref|ZP_05448789.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis bv. 1 str. Rev.1] gi|260563201|ref|ZP_05833687.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M] gi|265992328|ref|ZP_06104885.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|17983860|gb|AAL53005.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str. 16M] gi|260153217|gb|EEW88309.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M] gi|263003394|gb|EEZ15687.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] Length = 626 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|62289105|ref|YP_220898.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str. 9-941] gi|82699043|ref|YP_413617.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308] gi|189023379|ref|YP_001934147.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus S19] gi|237814596|ref|ZP_04593594.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str. 2308 A] gi|254696549|ref|ZP_05158377.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254731464|ref|ZP_05190042.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 4 str. 292] gi|260546402|ref|ZP_05822142.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038] gi|260759205|ref|ZP_05871553.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260760927|ref|ZP_05873270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|62195237|gb|AAX73537.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus bv. 1 str. 9-941] gi|82615144|emb|CAJ10077.1| Lipocalin-related protein and Bos/Can/Equ allergen:ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-termin [Brucella melitensis biovar Abortus 2308] gi|189018951|gb|ACD71673.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus S19] gi|237789433|gb|EEP63643.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str. 2308 A] gi|260096509|gb|EEW80385.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038] gi|260669523|gb|EEX56463.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260671359|gb|EEX58180.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] Length = 626 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 276/592 (46%), Positives = 383/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+Q RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQARRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|328544847|ref|YP_004304956.1| DEAD/DEAH box helicase [Polymorphum gilvum SL003B-26A1] gi|326414589|gb|ADZ71652.1| DEAD/DEAH box helicase domain-containing protein [Polymorphum gilvum SL003B-26A1] Length = 673 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 291/564 (51%), Positives = 384/564 (68%), Gaps = 21/564 (3%) Query: 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76 +RGY +LT VQE IL E D+LVSAQTGSGKTVAFGLALA TLL + DR A APL Sbjct: 17 KRGYTSLTPVQETILAQAPAEADLLVSAQTGSGKTVAFGLALAPTLLGDADRLGAAGAPL 76 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 ALAIAPTRELA+QV EL WLY + G A C+GG+ ERR L+ G HIVVGTPGRL Sbjct: 77 ALAIAPTRELALQVKAELTWLYEEAGAQTASCVGGMDPRSERRALERGTHIVVGTPGRLR 136 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 DHI L++S L+AVVLDEADEMLDLGFR+D+EFILD++P+ RR LMFSAT+ I L Sbjct: 137 DHIERGALDLSQLRAVVLDEADEMLDLGFREDLEFILDAAPEDRRTLMFSATVPKPIADL 196 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 A+ +QKDAVR++ S QH DIDY A VA ++R+NAI+N+LR++ A AIVFCSTR + Sbjct: 197 ARRFQKDAVRLSTISAREQHGDIDYFAHPVAPNERENAIINVLRFYEADKAIVFCSTREA 256 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 V R T LA F V ALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGIDLP+L+LV Sbjct: 257 VRRLTSRLANRGFSVAALSGELSQNERTHALQAMRDGRARVCVATDVAARGIDLPNLDLV 316 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376 IHA+L + LLHRSGRTGRAGRKG SV ++P +R AERL A+V W AP+ Sbjct: 317 IHADLPTGKAGLLHRSGRTGRAGRKGSSVLIVPFPRRRAAERLLLSADVKAAWSDAPAAA 376 Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITP 436 AIR++D R+L DP+ + + ++ + LL++H PE+IAA F+R+H++GL APE++T Sbjct: 377 AIRDKDKARLLADPVLTEPAEEEDLALARELLSEHGPERIAAAFVRLHQSGLPAPEDLTE 436 Query: 437 VSLVSGRDRFRDD--------SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 R R R + SRAF+V R+ F+ WF LS+G K KA+ RWL+PM+ Sbjct: 437 GGADDIRGRSRGERAPFESGPSRAFEV----RNKFEDGIWFRLSLGHKHKADPRWLLPMI 492 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGGEKPDFR 544 CR+ + ++ +GAI++ T E++ D++RR ++G+ + E D R Sbjct: 493 CRAGHVTKREVGAIKIGGTETLFEIAGSHAHKYADIIRREGSGERGVVI-----EPVDVR 547 Query: 545 GYKSSGFKSKNSQDGATKRFKRFK 568 G ++ ++++ + R++R + Sbjct: 548 GGRAPALRTEHDDEDRPSRYERAR 571 >gi|254718344|ref|ZP_05180155.1| DEAD-box ATP dependent DNA helicase [Brucella sp. 83/13] gi|265983304|ref|ZP_06096039.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] gi|306839567|ref|ZP_07472373.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653] gi|306842588|ref|ZP_07475237.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2] gi|264661896|gb|EEZ32157.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] gi|306287233|gb|EFM58721.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2] gi|306405353|gb|EFM61626.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653] Length = 626 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 276/592 (46%), Positives = 383/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+ +VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRVIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|85706796|ref|ZP_01037887.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseovarius sp. 217] gi|85668589|gb|EAQ23459.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseovarius sp. 217] Length = 662 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 279/532 (52%), Positives = 368/532 (69%), Gaps = 20/532 (3%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + AL+ RGY LT VQEA+ +P L D+LVSAQTGSGKTV FGLA+A TLL +R Sbjct: 23 ALSNALAARGYETLTPVQEAVTDPALSGSDLLVSAQTGSGKTVGFGLAIAPTLLDGAERL 82 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 PA+APLAL +APTRELA+QV REL WLYA+ G + C+GG+ ERR L+ GAHIVV Sbjct: 83 PPAAAPLALIVAPTRELALQVMRELSWLYAEAGARLVSCVGGMDARDERRALERGAHIVV 142 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRLCDHI L+++ L+A+VLDEADEMLDLGFR+D+EF+L ++P +RR LMFSAT+ Sbjct: 143 GTPGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFMLAAAPAERRTLMFSATV 202 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I LA+ +Q+DA RV + +QH+DI Y+A+ V D + A++N+LRYH A+NAIV Sbjct: 203 PPMIAKLAEKFQRDAHRVTTLTGAKQHADISYQALTVVPHDAEGAVINLLRYHDAQNAIV 262 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +TRA V+R T LA F VV+LSGELSQ ER++ALQ MRDGRARVC+ATDVAARGID Sbjct: 263 FANTRAMVARLTARLANRGFAVVSLSGELSQAERTHALQAMRDGRARVCVATDVAARGID 322 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 LP+L+LV+HAEL +N E LLHRSGRTGRAGRKG+S ++ +AERL + A ++ W Sbjct: 323 LPNLDLVVHAELPTNSEGLLHRSGRTGRAGRKGISALIVAVKSANKAERLLKFAKITAEW 382 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P+ + I +D +R+L DP++ ++ E LLA H PE IAA +LR++++ Sbjct: 383 TTPPTPDDIEAKDRERLLSDPVWSETPSETEAAFAAELLALHSPEVIAAAYLRLYKSRWS 442 Query: 430 APEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE++ P S R+R F S WF+LSVG+ +AEARWL+P+L Sbjct: 443 APEELSAPGSPAPARERA---------------AFGPSRWFALSVGNNDRAEARWLLPLL 487 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQLKYL 536 CR+ +++ +IGAIRVQ TFVE++ V L +LD+GI + L Sbjct: 488 CRAGNMDKSAIGAIRVQASETFVELAEAAVPGFLSALGEGGQLDEGIIARQL 539 >gi|254713301|ref|ZP_05175112.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M644/93/1] gi|254716345|ref|ZP_05178156.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M13/05/1] gi|261218127|ref|ZP_05932408.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] gi|261321026|ref|ZP_05960223.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] gi|260923216|gb|EEX89784.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] gi|261293716|gb|EEX97212.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] Length = 626 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGECFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|23501038|ref|NP_697165.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330] gi|254705304|ref|ZP_05167132.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 3 str. 686] gi|261756015|ref|ZP_05999724.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] gi|23346903|gb|AAN29080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis 1330] gi|261745768|gb|EEY33694.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] Length = 626 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 276/592 (46%), Positives = 383/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTP RL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPRRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|294851527|ref|ZP_06792200.1| ATP-dependent RNA helicase DeaD [Brucella sp. NVSL 07-0026] gi|294820116|gb|EFG37115.1| ATP-dependent RNA helicase DeaD [Brucella sp. NVSL 07-0026] Length = 626 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 275/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+V+ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPALSGALTARGYNTLTAVRNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAP++ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPNIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|161618112|ref|YP_001591999.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC 23365] gi|260567233|ref|ZP_05837703.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40] gi|161334923|gb|ABX61228.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC 23365] gi|260156751|gb|EEW91831.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40] Length = 626 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 276/592 (46%), Positives = 383/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTP RL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPRRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|254694921|ref|ZP_05156749.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 3 str. Tulya] gi|261215256|ref|ZP_05929537.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str. Tulya] gi|260916863|gb|EEX83724.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str. Tulya] Length = 534 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 265/534 (49%), Positives = 365/534 (68%), Gaps = 15/534 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKAD 534 >gi|39937062|ref|NP_949338.1| putative DEAD-box protein ATP-independent RNA helicase [Rhodopseudomonas palustris CGA009] gi|39650919|emb|CAE29442.1| putative DEAD-box protein, ATP-independent RNA helicase [Rhodopseudomonas palustris CGA009] Length = 694 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 279/557 (50%), Positives = 370/557 (66%), Gaps = 19/557 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P + AL+ER Y+ T VQ A+L PD +D+LVSAQTGSGKTVA+GLA+A LL Sbjct: 6 FPTSPPPLARALAERNYLQATPVQSAVLAPDTAGRDLLVSAQTGSGKTVAYGLAIAQDLL 65 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + ++F+PA+APLAL +APTRELA+QV REL WLY G + C+GG+ RE+R+L + Sbjct: 66 GDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRHAGGRIVSCVGGMDPRREQRELAD 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+R L++S LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR L Sbjct: 126 GAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILETTPETRRTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LAK YQ DA+R+ + H+DI+YRA+ +A +D ++A+VN+LRY Sbjct: 186 LFSATLPRGIIALAKTYQHDAMRIEVEGAEGGHADIEYRAIRIAPNDVEHAVVNVLRYVE 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVFC+TR++V+ L E F VVALSGEL+Q ER+ AL +RDGRARVC+ATDV Sbjct: 246 SPTAIVFCNTRSAVNHLQTALLERGFAVVALSGELTQNERTGALNALRDGRARVCVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP+L LVIHAEL ++ E + HRSGRTGRAG KG+SV ++P +RRAE L + A Sbjct: 306 AARGIDLPNLGLVIHAELPNDAEVMQHRSGRTGRAGNKGVSVLLVPPARRRRAELLLQLA 365 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + W AP + IR D QR+LQDPLF + +++ + LLA+ PE+IA R+ Sbjct: 366 GIEANWGTAPQADEIRSLDQQRMLQDPLFTEEPTAEDQALAQALLAERSPEQIAVALARV 425 Query: 424 HRAGLCAPEEITPVSLVSGRDR---------------FRDDS-RAFKVGGGSRDNFKGSS 467 RA + APE+I R R RD + R+ G + G Sbjct: 426 VRARMPAPEDILDPGERPARGRDERPGKTAREPRDHEARDKAPRSRSAKAGEKHAITGGV 485 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527 WF ++G ++ AEARWL+PM+CR GI RQ IGAIR+ T E+S+ D +K Sbjct: 486 WFRAAIGKRKNAEARWLLPMICRRGGITRQDIGAIRILDTTTEFEISSAAADAFAAQIKR 545 Query: 528 ---DKGIQLKYLGGEKP 541 D I+++ L G KP Sbjct: 546 PDHDDNIRIEPLIGAKP 562 >gi|115522860|ref|YP_779771.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115516807|gb|ABJ04791.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris BisA53] Length = 694 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 286/588 (48%), Positives = 379/588 (64%), Gaps = 25/588 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P + AL+ER Y+ T VQ A+L PD +D+LVSAQTGSGKTVA+GLA+A LL Sbjct: 3 FLTTPPPLARALAERNYLEATPVQAAVLAPDAAGRDLLVSAQTGSGKTVAYGLAIARDLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + ++F+PA+APLAL +APTRELA+QV REL WLY G V C+GG+ RE+R+L Sbjct: 63 GDVEQFAPAAAPLALIVAPTRELALQVHRELGWLYRNAGARVVSCVGGMDPRREQRELAE 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+R L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P+ RR L Sbjct: 123 GAHIVVGTPGRLCDHLRRGRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPETRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI TLAK YQ +A RV +A H DI+YRA+ +A SD ++A+VN+LR+ Sbjct: 183 LFSATLPRAIVTLAKTYQHNAFRVEVAGGEHGHVDIEYRAIRIAPSDVEHAVVNVLRFIE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +AIVFC+TR +V+ L E F VVALSGEL+Q ER+ AL +RDGRARVC+ATDV Sbjct: 243 SPSAIVFCNTRNAVNHLQTSLLERGFSVVALSGELTQNERTTALNSLRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP+L LV+HA+L ++PE + HRSGRTGRAG+KG+SV ++P +RRAE L A Sbjct: 303 AARGIDLPNLGLVVHADLPNDPEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAETLLNLA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + +W AP + IR D QR++QD LF + +++++ LLA+ E+IA R+ Sbjct: 363 GIDAIWGTAPQADEIRTLDQQRMMQDALFTEEASTEDQELARALLAERSGEEIAVALARL 422 Query: 424 HRAGLCAPEEITPVSLVSGRDR-----------FRDD---------SRAFKVGGGSRDNF 463 +RA L APE+I L R R R+D R G + Sbjct: 423 YRARLPAPEDILDPGLAHARARDDRAAGKGPRAAREDRDYGPRDSAPRPRSAKAGQKHAM 482 Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523 WF ++G ++ AEARWL+PM+CR GI+RQ+IGAIR+ T E+S + Sbjct: 483 TDGVWFRAAIGKRKNAEARWLLPMICRRGGIDRQAIGAIRILDTSTEFEISQSAAEAFAA 542 Query: 524 TVKL---DKGIQLKYLGGEKPDFRGYKSSGFKSK--NSQDGATKRFKR 566 +K D I+++ L G KP FK N D +R KR Sbjct: 543 QIKRPDKDDNIRIEPLIGAKPLEPSNDKPAFKPHDGNKPDRDARRDKR 590 >gi|192292890|ref|YP_001993495.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] gi|192286639|gb|ACF03020.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] Length = 691 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 279/557 (50%), Positives = 370/557 (66%), Gaps = 19/557 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P + AL+ER Y+ T VQ A+L PD +D+LVSAQTGSGKTVA+GLA+A LL Sbjct: 3 FPTSPPPLARALAERNYLQATPVQSAVLAPDTTGRDLLVSAQTGSGKTVAYGLAIARDLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + ++F+PA+APLAL +APTRELA+QV REL WLY G + C+GG+ RE+R+L + Sbjct: 63 GDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRHAGGRIVSCVGGMDPRREQRELAD 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+R L++S LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR L Sbjct: 123 GAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILETTPETRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LAK YQ DA+R+ + H+DI+YRA+ +A +D ++A+VN+LRY Sbjct: 183 LFSATLPRGIIALAKTYQHDAMRIEVEGAEGGHADIEYRAIRIAPNDVEHAVVNVLRYVE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVFC+TR++V+ L E F VVALSGEL+Q ER+ AL +RDGRARVC+ATDV Sbjct: 243 SPTAIVFCNTRSAVNHLQTALLERGFAVVALSGELTQNERTGALNALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP+L LVIHAEL ++ E + HRSGRTGRAG KG+SV ++P +RRAE L + A Sbjct: 303 AARGIDLPNLGLVIHAELPNDAEVMQHRSGRTGRAGNKGISVLLVPPARRRRAELLLQLA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + W AP + IR D QR+LQDPLF + +++ + LLA+ PE+IA R+ Sbjct: 363 GIEANWGTAPQADEIRSLDQQRMLQDPLFTEEPTAEDQALAQALLAERSPEQIAVALARM 422 Query: 424 HRAGLCAPEEITPVSLVSGRDR---------------FRDDS-RAFKVGGGSRDNFKGSS 467 RA + APE+I R R RD + R+ G + G Sbjct: 423 VRARMPAPEDILDPGERPARGRDERPGKTAREPRDHEARDKAPRSRSAKAGEKHAITGGV 482 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527 WF ++G ++ AEARWL+PM+CR GI RQ IGAIR+ T E+S+ D +K Sbjct: 483 WFRAAIGKRKNAEARWLLPMICRRGGITRQDIGAIRILDTTTEFEISSAAADAFAAQIKR 542 Query: 528 ---DKGIQLKYLGGEKP 541 D I+++ L G KP Sbjct: 543 PDHDDNIRIEPLIGAKP 559 >gi|163842399|ref|YP_001626803.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445] gi|163673122|gb|ABY37233.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445] Length = 626 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 276/592 (46%), Positives = 382/592 (64%), Gaps = 35/592 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +N + LLHRSGRTGRAGRKG V V+P +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNSDTLLHRSGRTGRAGRKGTCVLVVPFLRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465 L A A EE++ PV V G+ DRF R + R+ Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A D R++V Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540 Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558 ++G K L G KP +K GF+ + D Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591 >gi|114768996|ref|ZP_01446622.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255] gi|114549913|gb|EAU52794.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255] Length = 667 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 262/524 (50%), Positives = 357/524 (68%), Gaps = 14/524 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + +AL+++GY LT VQ + + D+LVSAQTGSGKTV FG+A+A T+L + Sbjct: 3 KTLEDALAKQGYDTLTPVQLEVSKKEFENSDLLVSAQTGSGKTVGFGIAIAPTILKDAIN 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F A APLAL IAPTRELA+QV REL WLY +A C+GG+ + ERR L+ G+HIV Sbjct: 63 FDKAVAPLALVIAPTRELAMQVKRELTWLYGMAKATIASCVGGMDMRDERRSLERGSHIV 122 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DHI+ +N+S +KAVVLDEADEMLDLGFR+D+EFIL +P+ RR LMFSAT Sbjct: 123 VATPGRLRDHIQRGSINLSQVKAVVLDEADEMLDLGFREDLEFILSEAPESRRTLMFSAT 182 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI LAK+YQKDA+R+ S+ +QH+DI+Y A+ V+ D +NAI+N LRY+ A NA+ Sbjct: 183 VPRAIVNLAKSYQKDAIRITTVSDTKQHADIEYIAMTVSPRDGENAIINALRYYEAPNAL 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+TRA V+R T L+ F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI Sbjct: 243 VFCNTRAMVNRLTSRLSNRGFSVVALSGELSQSERTHALQAMRDGRARVCVATDVAARGI 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 DLP+L+LV+HAEL N E +LHRSGRTGRAGR+G+S ++P +++AERL + V+ Sbjct: 303 DLPNLDLVVHAELPQNHETMLHRSGRTGRAGRQGVSAMIVPSRFRKKAERLLQLGKVTAN 362 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 W+ APS + I E+D +R+L D + + EK VD L + E++A F R++ A Sbjct: 363 WQDAPSAKQIIEKDQERLLSDSTWTNLPTSAEKGSVDKLTETFNIEQLATAFFRLYIANQ 422 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 APEE+ P S +G + R + F + WFS+S G + A R ++PM+ Sbjct: 423 SAPEELAP-SGATGAPKPRGE-------------FGPTVWFSISGGREADANPRRMLPMI 468 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532 C++ ++R IGAIR+Q TF+E+ V+ + + +K I+ Sbjct: 469 CKAGNLSRDDIGAIRIQDTETFIEILKSSVEGFLKAIGSNKEIE 512 >gi|299135345|ref|ZP_07028536.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] gi|298590322|gb|EFI50526.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] Length = 653 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 280/531 (52%), Positives = 359/531 (67%), Gaps = 23/531 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F I + AL+ER Y LT VQ A+L D ++D+LVSAQTGSGKTVA+GLA+A LL Sbjct: 3 FPTISSPLARALAERNYDKLTPVQTAVLADDAADRDLLVSAQTGSGKTVAYGLAIAKNLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + +RF A+APLAL +APTRELA+QV REL WLY + C+GG+ RE+R+L Sbjct: 63 GDAERFPRAAAPLALIVAPTRELALQVHRELTWLYHYADARIVSCVGGMDPRREQRELAE 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+R L+IS LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR L Sbjct: 123 GAHIVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLDLGFREDMEFILETTPETRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I TLAK YQ+ A RV +A + H+DIDYRA+ +A SD ++A VN+LR+ Sbjct: 183 LFSATFPRGIITLAKQYQQQAFRVEVAGDEGGHADIDYRAIRIAASDVEHATVNVLRFFE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +A+VFC+TR +V L E F VVALSGEL+Q ER+ ALQ +RDGRARVC+ATDV Sbjct: 243 SPSALVFCNTRNAVKHLQVALMERGFSVVALSGELTQNERTQALQALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP+L+LVIHA+L ++ E L HRSGRTGRAGRKG+SV ++P +RRA+ L A Sbjct: 303 AARGIDLPNLDLVIHADLPNDAEVLQHRSGRTGRAGRKGVSVLLVPPARRRRADILLNLA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 N+ V W AP+ + IRE D +R+LQD LF + D+ + LLA+ PE IAA R+ Sbjct: 363 NIDVDWSMAPTADEIRELDQKRMLQDDLFAQEVTADDLNLARALLAERSPEDIAAALARL 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRA----------FKVGGGSRDNFK--------- 464 +RA L +PE+I +GR R D R G GSR K Sbjct: 423 YRARLPSPEDILDPGQNAGRSR---DERGRAKDDRSSRDDDRGTGSRSKTKKPSARHGMA 479 Query: 465 -GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 GS WF ++G K+ AEARWL+PM+CR GI++Q IG I + T E+S Sbjct: 480 EGSVWFRAAIGRKKNAEARWLLPMICRRGGIDKQDIGRILIGETSTEFEIS 530 >gi|146340215|ref|YP_001205263.1| putative DEAD-box cold-shock protein, ATP-independent RNA helicase [Bradyrhizobium sp. ORS278] gi|146193021|emb|CAL77030.1| Putative DEAD-box cold-shock protein, ATP-independent RNA helicase [Bradyrhizobium sp. ORS278] Length = 634 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 269/515 (52%), Positives = 358/515 (69%), Gaps = 14/515 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 ++ER YVN T VQ A+L D +D+LVSAQTGSGKTVA+GLA+A+ +L E +RF PA+A Sbjct: 1 MAERNYVNPTPVQLAVLAEDAEGRDLLVSAQTGSGKTVAYGLAMAANMLGEAERFGPAAA 60 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 PLAL +APTRELA+QV REL WLY G V C+GG+ RE+R+L+ GAHIVVGTPGR Sbjct: 61 PLALIVAPTRELALQVQRELAWLYQHAGARVISCVGGMDPRREQRELEAGAHIVVGTPGR 120 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 LCDH+R L+IS LKAVVLDEADEML+LGFR+D+EFIL+++P+ RR L+FSAT I Sbjct: 121 LCDHLRRGRLDISELKAVVLDEADEMLNLGFREDLEFILETTPETRRTLLFSATFPRGIV 180 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 LAK YQ DA R+ + + H+DI+YRA+ +A D ++A+VN+LR++ + +AIVFC+TR Sbjct: 181 ALAKQYQDDAFRIEVEGDEGGHADIEYRAIRIAPDDAEHAVVNLLRFYESPSAIVFCNTR 240 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 +V L E F VVALSGEL+Q ER+ ALQ +RDGR+RVC+ATDVAARGIDL +L+ Sbjct: 241 EAVRHLQAALLERGFSVVALSGELTQNERTMALQSLRDGRSRVCVATDVAARGIDLANLD 300 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 LVIHAEL ++PE + HRSGRTGRAGRKG+SV ++ +RRAE L + A + W AP Sbjct: 301 LVIHAELPNDPEVMQHRSGRTGRAGRKGVSVLLVSPARRRRAEMLLKLAGIEAEWGAAPQ 360 Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEI 434 E IR+ D +R+LQD + + ++ + LLA+ PE IAA +R++RA L +PE+I Sbjct: 361 AEEIRKLDQERMLQDSVLTEESTAEDLALAQALLAERSPEDIAAALVRLYRARLPSPEDI 420 Query: 435 TPVSLVSGRDR---------FRDDSRA----FKVGGGSRDNF-KGSSWFSLSVGSKQKAE 480 GR R R + RA K G SR + S WF ++G ++ AE Sbjct: 421 LDPGEDRGRSRPDRAARERPSRGEERAPAPRTKGGKPSRHGMGEPSVWFRAAIGRRKNAE 480 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 ARWL+PM+CR GI++Q IGAI++ T E++A Sbjct: 481 ARWLLPMICRRGGIDKQDIGAIKISDTTTEFEIAA 515 >gi|126460913|ref|YP_001042027.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126102577|gb|ABN75255.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 793 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 270/552 (48%), Positives = 369/552 (66%), Gaps = 15/552 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +GY +LT VQEA+L + +D LVSAQTGSGKTVAFG+A+A +L DR A P+A Sbjct: 33 KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 92 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 LAIAPTRELA+QV REL WLY + G +A C+GG+ ERR L GAHIVVGTPGRL D Sbjct: 93 LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 152 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+ I LA Sbjct: 153 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 212 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 K +Q+DAVR+ A E +QH+DI+YRA+ V+ D+++AI N+LR++ A +AIVFC TR +V Sbjct: 213 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 272 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI Sbjct: 273 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 332 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 HA+L +N E LLHRSGRTGRAG KG+SV + + R+A+RL A + W PS + Sbjct: 333 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 392 Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437 ++ERD R+L+ P+ + DE + + LL + P +++A F+R+ R G APE + + Sbjct: 393 VQERDDARLLEHPVLGQDLS-DEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 451 Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497 + R + R F + W++++VG +AEARWL+P +C + G+ + Sbjct: 452 APPEPSQRAPRE----------RGEFGEAVWYAVAVGHTGRAEARWLLPKICEAGGVTKN 501 Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553 IGAIRVQ + TFV+++ ++++ G+ + L G E+P+ K ++ Sbjct: 502 EIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPMLERPERAPRKPFAERA 561 Query: 554 KNSQDGATKRFK 565 ++D A +R K Sbjct: 562 PRARDEAPRREK 573 >gi|146278925|ref|YP_001169084.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145557166|gb|ABP71779.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 764 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 270/552 (48%), Positives = 368/552 (66%), Gaps = 15/552 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +GY +LT VQEA+L + +D LVSAQTGSGKTVAFG+A+A +L DR A P+A Sbjct: 17 KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAVADQILQGADRLLFADTPIA 76 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 LAIAPTRELA+QV REL WLYA+ G +A C+GG+ ERR L+ GAHIVVGTPGRL D Sbjct: 77 LAIAPTRELALQVARELGWLYAEAGAQIATCVGGMDYRTERRALERGAHIVVGTPGRLRD 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI L+++ L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+ I LA Sbjct: 137 HIERGSLDLTGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 K +Q+DAVR+ A E +QH+DI+YR + V+ DR++AI N+LR++ A +AIVFC TR +V Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRVLTVSARDREHAIFNVLRFYEAPSAIVFCKTRMAV 256 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 HA+L +N E LLHRSGRTGRAG KG+SV + + R+A+RL A + W PS + Sbjct: 317 HADLPTNSETLLHRSGRTGRAGAKGVSVLIAAPSEVRKAQRLLSGAKLVADWGKPPSADE 376 Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437 ++ERD R+L+ P+ + +E + + LL + P ++A+ F+R+ R APE + V Sbjct: 377 VQERDDARLLEHPVLGQDLS-EEMPLAEKLLERFGPAQMASAFVRLWREARSAPEVLQDV 435 Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497 + R + R F + W+S+ VG +AEARWL+P +C + G+ + Sbjct: 436 APPEPAQRAPRE----------RGEFGEAVWYSVGVGHTGRAEARWLLPKICEAGGVTKN 485 Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553 IGAIRVQ + TFV+++ ++++ G+ + L G E+P+ K ++ Sbjct: 486 EIGAIRVQQEQTFVQIAKAAAKKFGDALEIEAGVGMVRLEGEPSLERPERAPRKPFAERT 545 Query: 554 KNSQDGATKRFK 565 ++D A +R K Sbjct: 546 PRTRDEAPRREK 557 >gi|221640975|ref|YP_002527237.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides KD131] gi|221161756|gb|ACM02736.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides KD131] Length = 777 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 270/552 (48%), Positives = 369/552 (66%), Gaps = 15/552 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +GY +LT VQEA+L + +D LVSAQTGSGKTVAFG+A+A +L DR A P+A Sbjct: 17 KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 76 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 LAIAPTRELA+QV REL WLY + G +A C+GG+ ERR L GAHIVVGTPGRL D Sbjct: 77 LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+ I LA Sbjct: 137 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 K +Q+DAVR+ A E +QH+DI+YRA+ V+ D+++AI N+LR++ A +AIVFC TR +V Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 256 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 HA+L +N E LLHRSGRTGRAG KG+SV + + R+A+RL A + W PS + Sbjct: 317 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 376 Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437 ++ERD R+L+ P+ + DE + + LL + P +++A F+R+ R G APE + + Sbjct: 377 VQERDDARLLEHPVLGQDLS-DEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 435 Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497 + R + R F + W++++VG +AEARWL+P +C + G+ + Sbjct: 436 APPEPSQRAPRE----------RGEFGEAVWYAVAVGHTGRAEARWLLPKICEAGGVTKN 485 Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553 IGAIRVQ + TFV+++ ++++ G+ + L G E+P+ K ++ Sbjct: 486 EIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPILERPERAPRKPFAERA 545 Query: 554 KNSQDGATKRFK 565 ++D A +R K Sbjct: 546 PRARDEAPRREK 557 >gi|332559951|ref|ZP_08414273.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides WS8N] gi|332277663|gb|EGJ22978.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 777 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 270/552 (48%), Positives = 369/552 (66%), Gaps = 15/552 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +GY +LT VQEA+L + +D LVSAQTGSGKTVAFG+A+A +L DR A P+A Sbjct: 17 KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 76 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 LAIAPTRELA+QV REL WLY + G +A C+GG+ ERR L GAHIVVGTPGRL D Sbjct: 77 LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+ I LA Sbjct: 137 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 K +Q+DAVR+ A E +QH+DI+YRA+ V+ D+++AI N+LR++ A +AIVFC TR +V Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 256 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 HA+L +N E LLHRSGRTGRAG KG+SV + + R+A+RL A + W PS + Sbjct: 317 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 376 Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437 ++ERD R+L+ P+ + DE + + LL + P +++A F+R+ R G APE + + Sbjct: 377 VQERDDARLLEHPVLGQDLS-DEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 435 Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497 + R + R F + W++++VG +AEARWL+P +C + G+ + Sbjct: 436 APPEPSQRAPRE----------RGEFGEAVWYAVAVGHTGRAEARWLLPKICEAGGVTKN 485 Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553 IGAIRVQ + TFV+++ ++++ G+ + L G E+P+ K ++ Sbjct: 486 EIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPMLERPERAPRKPFAERA 545 Query: 554 KNSQDGATKRFK 565 ++D A +R K Sbjct: 546 PRARDEAPRREK 557 >gi|316935560|ref|YP_004110542.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315603274|gb|ADU45809.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris DX-1] Length = 701 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 279/560 (49%), Positives = 365/560 (65%), Gaps = 25/560 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P + AL+ER Y+ T VQ A+L D +D+LVSAQTGSGKTVA+GLA+A LL Sbjct: 3 FPTSPPPLARALAERNYLEATPVQSAVLASDTAGRDLLVSAQTGSGKTVAYGLAIARDLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + ++F+PA+APLAL +APTRELA+QV REL WLY G + C+GG+ RE+R+L Sbjct: 63 DDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRHAGARIVSCVGGMDPRREQRELAE 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+R L++S LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR L Sbjct: 123 GAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILETTPETRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LAK YQ DA+R+ + H+DI+YRA+ +A D ++A+VN+LRY Sbjct: 183 LFSATLPRGIIALAKTYQHDAMRIEVEGAEGGHADIEYRAIRIAPGDVEHAVVNVLRYVE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVFC+TR++V+ L E F VVALSGEL+Q ER+ AL +RDGRARVC+ATDV Sbjct: 243 SPTAIVFCNTRSAVNHLQTALLERGFAVVALSGELTQNERTGALNALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP+L LVIHAEL ++ E + HRSGRTGRAG KG+SV ++P +RRAE L + A Sbjct: 303 AARGIDLPNLGLVIHAELPNDAEVMQHRSGRTGRAGNKGISVLLVPPARRRRAELLLQLA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + W AP + IR D QR+LQDPLF + +++ + LLA+ PE+IA R+ Sbjct: 363 GIEANWGTAPQADEIRSLDQQRMLQDPLFTEEPTAEDQALAQALLAERSPEQIAVALARV 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------------------FK 464 RA + APE+I R R D R K RD+ Sbjct: 423 VRARMPAPEDILDPGERPARGR---DERGGKAAREPRDHEARDKAPRTRSAKAGEKHAMA 479 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 G WF ++G ++ AEARWL+PM+CR GI RQ IGAIR+ T E+S D Sbjct: 480 GGVWFRAAIGKRKNAEARWLLPMICRRGGITRQDIGAIRILDTTTEFEISPAAADAFAAQ 539 Query: 525 VKL---DKGIQLKYLGGEKP 541 +K D I+++ L G KP Sbjct: 540 IKRPDHDDNIRIEPLIGAKP 559 >gi|148556699|ref|YP_001264281.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas wittichii RW1] gi|148501889|gb|ABQ70143.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1] Length = 593 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 269/538 (50%), Positives = 354/538 (65%), Gaps = 10/538 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F ++P+ + EA++ERGY T VQ ++ + ++D+LVSAQTGSGKTVA+GLA+A TLL Sbjct: 3 FSSLPRPVAEAITERGYTAPTPVQAQVIAAEAHDRDLLVSAQTGSGKTVAYGLAIAETLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + A PLAL IAPTRELA+QV REL+WLYAK G V C+GG++V E+R L Sbjct: 63 QGAEALPRAGEPLALIIAPTRELALQVQRELQWLYAKLGARVVSCVGGMNVRVEQRQLSY 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRL DH+ L L+AV+LDEADEMLDLGFR+D+E ILD +P +RR L Sbjct: 123 GCHIVVGTPGRLKDHLERGALQPGSLRAVILDEADEMLDLGFREDLEEILDLTPPERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LAK YQ+DA+R+ SE H+DIDYRA+ VA +D NA+VN+LR+H Sbjct: 183 LFSATMPKPIALLAKRYQRDALRIQTTSERESHADIDYRAMAVAPADIQNAVVNVLRFHE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AK A+VFC+TR +V R + L E F V LSGELSQ ER++ALQ +RD RARVC+ATDV Sbjct: 243 AKGAMVFCATRENVRRLSATLTERGFSAVTLSGELSQNERNHALQALRDRRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP LELVIHAEL +PE L HRSGRTGRAGRKG V + P +R AERL R A Sbjct: 303 AARGIDLPGLELVIHAELPIDPETLQHRSGRTGRAGRKGTCVLITPYQRRRHAERLLRGA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 NV+ W+ P+ + I RD +R+L+ L + I ++ + LL E+IAA F+R Sbjct: 363 NVNATWDKVPTPDEIYARDQERLLES-LSVGEISDEDLDVARKLLETRSAEEIAAAFVRT 421 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 R L APE++ S ++ R D G R F+ + WF ++VG A+ RW Sbjct: 422 QRQSLPAPEDLIDASPIA-----RGDREQATREQGPRPGFEDTVWFRMNVGRGANADPRW 476 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYLG 537 L+P+LCR I ++ +GAIR+ T E ++ D L+RT + G+ ++ G Sbjct: 477 LLPLLCRRGHITKREVGAIRIFQTETRFEIPRAIAGKFTDALKRTAGEEDGVVIEPAG 534 >gi|254476157|ref|ZP_05089543.1| cold-shock deAd-box protein a [Ruegeria sp. R11] gi|214030400|gb|EEB71235.1| cold-shock deAd-box protein a [Ruegeria sp. R11] Length = 724 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 274/527 (51%), Positives = 351/527 (66%), Gaps = 16/527 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL RGY LT VQ A+ P+L D+LVSAQTGSGKTV FGLA+A TLL + + A Sbjct: 7 QALQARGYEQLTPVQLAVTAPELENSDLLVSAQTGSGKTVGFGLAMAPTLLGDAETLGRA 66 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + PLAL IAPTRELA+QV REL WLYA+ G V +GG+ + ERR L+ GAHIVV TP Sbjct: 67 TLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERGAHIVVATP 126 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI +++S ++AVVLDEADEMLDLGFR+D+EFIL SP+ RR LMFSAT+ Sbjct: 127 GRLRDHINRGSIDLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLMFSATVPAG 186 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ Y KD R+ +E QH+DI+Y+ + VA D ++AI+N+LRYH A NAIVFC+ Sbjct: 187 IARLAETYLKDHQRIKTLAEASQHADIEYQMLAVAQRDTEHAIINVLRYHEAPNAIVFCN 246 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TRA V+R T L+ F VVALSGEL+Q ERSNALQ +RDGRARVC+ATDVAARGIDLP Sbjct: 247 TRAVVNRLTTRLSNRGFSVVALSGELTQSERSNALQSLRDGRARVCVATDVAARGIDLPK 306 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+LVIHA+L S+ E LLHRSGRTGRAGR+G+S ++P + +A RL R A ++ PA Sbjct: 307 LDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKAKGKALRLLRSAKITAETTPA 366 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432 PS + +R RD +R+L DP + D++ E V LL + PE++A +LR+ APE Sbjct: 367 PSADQVRARDFERLLADPAWSDAVSEGEAPAVAELLERFAPEQLAVAYLRLFHQRHSAPE 426 Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492 E++ D +A + R F S WFS+S G K AE R L+P LC + Sbjct: 427 ELS-------------DPQADRRERQERAPFGPSVWFSVSGGRKAGAEPRRLLPALCNAG 473 Query: 493 GINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKGIQLKYL 536 G+ + IGAIRVQ D ++VEV D VK L++G + L Sbjct: 474 GLTKDDIGAIRVQFDQSYVEVREASADAFWGAVKHEGLEEGASVTRL 520 >gi|154245535|ref|YP_001416493.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154159620|gb|ABS66836.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus Py2] Length = 609 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 266/551 (48%), Positives = 367/551 (66%), Gaps = 9/551 (1%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + AL+ER Y + T VQ A+L P+ +D+LVSAQTGSGKTVA+GLA+A TLL ++RF Sbjct: 6 ALARALAERDYNDPTPVQLAVLAPEASGRDLLVSAQTGSGKTVAYGLAMADTLLGTDERF 65 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 PA+AP AL +APTRELA+QV RE EWLYA TG + C+GG+ +E+R L GAH+VV Sbjct: 66 GPATAPQALVVAPTRELALQVQREFEWLYAATGARIVSCVGGMDPRQEQRALSRGAHMVV 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH+ L+IS ++ VVLDEADEMLDLGFR+D++FILD++P +RR L+FSAT+ Sbjct: 126 GTPGRLRDHLERGRLDISAVRVVVLDEADEMLDLGFREDLQFILDATPPERRSLLFSATL 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 IT LAK YQ++A+R+ +AS H+DI+YRA+ V + ++A+VN+LR++ A +AIV Sbjct: 186 PRGITMLAKRYQREALRIEVASAEGGHADIEYRAMRVVPKEIEHAVVNVLRFYDAPSAIV 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+TR +V L E F VALSGELSQ ER++ALQ +RDGRARVC+ATDVAARGID Sbjct: 246 FCNTRETVRHLHATLQERQFSAVALSGELSQNERNSALQALRDGRARVCVATDVAARGID 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 LP L LVIHA+L ++ E+L HRSGRTGRAGRKG+SV ++P +RR E + R ++ W Sbjct: 306 LPSLGLVIHADLPNDAESLQHRSGRTGRAGRKGVSVLLVPPFRRRRTEDMLRGMGLTPAW 365 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P+ + IR+ D +R+L+DPL D ++ + LL + E + A +R++RAGL Sbjct: 366 SGPPTADEIRKLDHERMLRDPLLTDEPNEEDAAVARALLEQQPAEHLVAALVRLYRAGLP 425 Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489 +PEE+ GRDR G +WF L++G + KA+ RWL+P++C Sbjct: 426 SPEEVADPGEPRGRDRAAARGLGGPG------GAGGGAWFRLNIGRRNKADPRWLLPLIC 479 Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG--IQLKYLGGEKPDFRGYK 547 R + R IGAIR+ + T EVSA +D + + G + ++ L G P R + Sbjct: 480 RRGNVTRDDIGAIRIFDEETAFEVSAAALDRFSTSARKSDGSDVIIEPLPGGAPSSRPER 539 Query: 548 SSGFKSKNSQD 558 + + K QD Sbjct: 540 PAP-RWKGPQD 549 >gi|67527053|gb|AAY68322.1| putative cold-shock dead-box protein A [uncultured marine bacterium 66A03] Length = 659 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 266/534 (49%), Positives = 351/534 (65%), Gaps = 22/534 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + EA+S R Y+ LT VQEA+L + D+LVSAQTGSGKT+AFG+++A+TLLAE Sbjct: 7 IHSALAEAMSARSYITLTPVQEAVLKIEDSNSDLLVSAQTGSGKTLAFGISIATTLLAEK 66 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F PLA+ IAPTRELA+QV +ELEWLY +T A C+GG+ ERR L++GAH Sbjct: 67 MEFDRPKIPLAIIIAPTRELALQVRKELEWLYVRTKAQFASCVGGMDPRAERRTLESGAH 126 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVVGTPGRL DHI L +S +KAVVLDEADEMLD+GFR+D+ FIL +P +RR L+FS Sbjct: 127 IVVGTPGRLRDHIERGVLRLSDIKAVVLDEADEMLDMGFREDLTFILGKAPVERRTLLFS 186 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I LAK YQKD+VR++++S+ QH DI Y A+ + SDRD A++N+LRYH Sbjct: 187 ATVPTQIVKLAKTYQKDSVRISVSSKKSQHLDISYHAIKIQPSDRDKAVINLLRYHDVSG 246 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVFC+TRA+V+ L F VVALSGELSQ+ER+ ALQ MR G+A VC+ATDVAAR Sbjct: 247 AIVFCNTRAAVTHLASRLTNRGFSVVALSGELSQKERNFALQSMRAGKANVCVATDVAAR 306 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GIDLP+LELVIHA+L + E +LHRSGRTGRAGRKG+SV +IP ++ ER+F + Sbjct: 307 GIDLPNLELVIHADLPQSNEAMLHRSGRTGRAGRKGVSVVLIPYRNFKKVERMFDSNGIE 366 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 +W PS + I E+D +L+ L E ++ +L K E IA+ F+R A Sbjct: 367 PIWVNPPSADQIIEKDRISLLKSELLTSPADASEVEIAQKILQKFPIEAIASAFVRSQMA 426 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 G APEE+T + + D F SSWF LSVG + AE RWL+ Sbjct: 427 GKSAPEELTVSNAIGPAD------------------FSNSSWFELSVGYRDNAEPRWLVA 468 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL 536 MLCR +++ IG I++ LTFVE++++GV L + L++ IQ+K + Sbjct: 469 MLCRVGNMDKSLIGDIQIHNSLTFVEIASNGVQQLLAEIGPDFMLEEKIQIKQM 522 >gi|83859788|ref|ZP_00953308.1| hypothetical protein OA2633_07304 [Oceanicaulis alexandrii HTCC2633] gi|83852147|gb|EAP90001.1| hypothetical protein OA2633_07304 [Oceanicaulis alexandrii HTCC2633] Length = 685 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 275/576 (47%), Positives = 367/576 (63%), Gaps = 18/576 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M IP + AL +GY LT VQ A+L + +D+LVSAQTGSGKTVAFG+A+A Sbjct: 1 MSFPNTIPSALVTALEAKGYETLTDVQNAVLTDEADGRDLLVSAQTGSGKTVAFGMAMAG 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLLA DR A APLAL IAPTRELA+QV REL+WLYA+ G +A +GG+ ERR Sbjct: 61 TLLAGEDRLPQAGAPLALIIAPTRELALQVQRELDWLYAEAGAKLASAVGGLDPRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRL DHI K L++S+++A+ LDEADEMLD GFR+D+EFIL S+P++R Sbjct: 121 LERGAHIVVGTPGRLRDHIERKALDLSNIRAIALDEADEMLDFGFREDLEFILGSAPEER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R L+FSAT+S I +A+ YQ+DA+R++ S QH+DI Y A VA DR+NA++N+LR Sbjct: 181 RTLLFSATVSKEIARIAETYQRDALRISTLSATNQHADITYLAHTVAGHDRENAVINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 YH A A+VFC+TR +V+R L F VALSGEL+Q ER+ ALQ +RDGRA VC+A Sbjct: 241 YHAAPRALVFCATRDAVNRLAAKLHNRGFHAVALSGELTQAERTKALQALRDGRATVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LV+HAE +N E+LLHRSGRTGRAG KG SVFV+ + + R RL Sbjct: 301 TDVAARGIDLPGLDLVVHAEPPTNAESLLHRSGRTGRAGAKGTSVFVVASSRKGRVIRLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 REA V W AP + +RE+D +R+ P + D + V L+ + EK+ A F Sbjct: 361 REAKVQAEWVDAPDADLVREKDRERLGDHPALSQEVDEDRLEEVRELIERFGAEKLTAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 L + APEE++ R+ D R + G R++F WF + +G KQ+AE Sbjct: 421 LSELERRMPAPEELSGTPPERQREERAD--RGPRRG---REDFDAGQWFEIDLGRKQRAE 475 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYL 536 RWL+P++CR GI IGAIR+ T +++ D +D + + + DK +++ Sbjct: 476 PRWLVPLICRVGGIVGNDIGAIRIGETATRFQIAEDKIDGFTEAMNQPRETDKNVRVTIA 535 Query: 537 GGEK-----PDF----RGYKSSGFKSKNSQDGATKR 563 G E P F RG + G + + G +R Sbjct: 536 GDEPFETAGPGFGSGPRGDRDRGKPKRTPRPGKAER 571 >gi|90422395|ref|YP_530765.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] gi|90104409|gb|ABD86446.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] Length = 659 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 283/588 (48%), Positives = 382/588 (64%), Gaps = 26/588 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + AL+ER Y + T VQ A+L +D+LVSAQTGSGKTVA+GLA+A LL + +RF Sbjct: 10 LARALAERNYNDPTPVQTAVLADQAAGRDLLVSAQTGSGKTVAYGLAIAKNLLGDAERFE 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+APLAL +APTRELA+QV REL WLYA V C+GG+ +E+R+L GAHIVVG Sbjct: 70 QAAAPLALIVAPTRELALQVHRELAWLYAYADARVVSCVGGMDPRQEQRELARGAHIVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRLCDH+R L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P RR L+FSAT+ Sbjct: 130 TPGRLCDHLRRGRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPPTRRTLLFSATLP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK YQ+ A RV +A+ H+DI+Y+A+ +A D ++A+VN+LR+H + + IVF Sbjct: 190 RGIVALAKQYQQQAFRVEVANGEGGHADIEYQAIRIAPGDVEHAVVNVLRFHESPSTIVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR +V L E F VVALSGEL+Q ER+ ALQ +RDGRARVC+ATDVAARGIDL Sbjct: 250 CNTRNAVKHLQTALLERGFSVVALSGELTQNERTMALQSLRDGRARVCVATDVAARGIDL 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P+L LVIHA+L ++ E + HRSGRTGRAG+KG+SV ++P +RRAE L A + VW Sbjct: 310 PNLALVIHADLPNDAEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAELLLNLAGIDAVWG 369 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430 APS + IR+ D +R+ QD LF + ++ + LLA+ PE IAA R++RA L + Sbjct: 370 TAPSADEIRKLDQERMFQDALFAEEPSAEDLVLAQALLAERSPEYIAAALARLYRARLPS 429 Query: 431 PEEI-----------TPVSLVSGRDRFRDDSRAF----KVGGGS-RDNFKGSSWFSLSVG 474 PE+I P + G R R + R + + G S R +G WF ++G Sbjct: 430 PEDILDPGERGARSREPRATTRGDSRPRAEDRDYSPKARPGKASTRHAMEGGVWFRAAIG 489 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKG 530 K+ AEARWL+PM+CR GI++Q IGAIR+ T E+S + ++RR K D Sbjct: 490 RKKNAEARWLLPMICRRGGIDKQDIGAIRIHDTTTEFEISGAAAESFAAMIRRPDKEDN- 548 Query: 531 IQLKYLGG-----EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573 I+++ +G + PD R ++ K S D + R GA ++ Sbjct: 549 IRIEAMGDAPAAQQAPDRRPPAGKPYERKPSSDKSYDRNHAGDGAPRD 596 >gi|90420716|ref|ZP_01228622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Aurantimonas manganoxydans SI85-9A1] gi|90335007|gb|EAS48768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Aurantimonas manganoxydans SI85-9A1] Length = 583 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 256/512 (50%), Positives = 348/512 (67%), Gaps = 1/512 (0%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + AL+ERGYV+ T VQ+A+L P ++D+LVSAQTGSGKT+A+GLALA TLL Sbjct: 3 FRTTSTPLAHALAERGYVDPTPVQDAVLEPQAADRDLLVSAQTGSGKTIAYGLALAPTLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E +RF PA AP+AL +APTRELA+QV EL WLYA+TG + C+GG+ E+R L Sbjct: 63 GEAERFGPAGAPMALIVAPTRELAMQVTTELAWLYAQTGAEMVTCVGGMDPRAEKRKLAQ 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRL DH+ L I LKA+VLDEADEML+LGFR+D+EF+L+++P++RR L Sbjct: 123 GAHIVVGTPGRLRDHLERGALQIGGLKALVLDEADEMLNLGFREDLEFLLEATPRERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I+++AK YQ+DA+R+ + H+DI+Y+A+ +A ++ ++A+VN+LR++ Sbjct: 183 LFSATLPKLISSMAKRYQRDALRIEATRSSAAHADIEYKAIRIAPNELEHAVVNVLRFND 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A +AIVFC+TR +V + L E F V LSGEL Q ER+ A+Q +RDGRARVC+ATDV Sbjct: 243 APSAIVFCNTREAVRHLSSGLLERGFSAVTLSGELGQAERNQAMQALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LVIHA+L S+ E L HRSGRTGRAGRKG+SV ++P + +R+AERL EA Sbjct: 303 AARGIDLPGLALVIHADLPSDAETLQHRSGRTGRAGRKGISVLLVPISRRRKAERLLAEA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + W PS +AIR+ D R+L DP+ D+ LL KH PE IAA R+ Sbjct: 363 RIRAEWGGTPSADAIRKLDEDRLLTDPVLAQEPGEDDLAAARSLLEKHSPETIAAALARL 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS-WFSLSVGSKQKAEAR 482 +R+ L APE++ +D + + RD G WF + VG + A+ + Sbjct: 423 YRSRLPAPEDVFDPGFGPDPKAGKDFAGKERTPRKERDQASGPMVWFHMDVGRRNNADPK 482 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 W++P+LCR I RQ IG I++ T E+S Sbjct: 483 WILPLLCRRGKITRQEIGMIKIFDRETKFEIS 514 >gi|58039896|ref|YP_191860.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] gi|58002310|gb|AAW61204.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] Length = 603 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 250/515 (48%), Positives = 356/515 (69%), Gaps = 6/515 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + + AL RGY LT VQEA+L P L E+D+LVSAQTGSGKTVAFGLA+A TLL Sbjct: 3 FPDTHPALKRALEARGYEQLTPVQEAVLQPGLDERDLLVSAQTGSGKTVAFGLAIAPTLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + DR P+ P+AL IAPTRELA+QV EL+WLYA+TG +A CIGG E R+L Sbjct: 63 GDADRLPPSPQPMALVIAPTRELALQVQSELKWLYAETGARIASCIGGTDARSEARELNR 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+ L++S L+ VVLDEADEMLD+GFR+++E +LD++P +RR L Sbjct: 123 GAHIVVGTPGRLCDHLSRGSLDLSALRCVVLDEADEMLDMGFREELEQLLDAAPAERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSATI+ I +LA+ YQK+A R++ S +QHSDI YR V+ + + ++VN+LR++ Sbjct: 183 LFSATIAREIASLARRYQKNAERIDTVSGAKQHSDITYRCVITQPQEIERSLVNVLRFYE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + A+VFC+TR V++ L E F VA+SGE+ Q ERS A++ +R G+ARVC+ATDV Sbjct: 243 SPTAMVFCNTRMMVNQVQAALLERGFASVAISGEMGQNERSRAIESLRSGQARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P L LVIHA + + E LLHRSGRTGRAGRKG SV ++P N +RRAERL + A Sbjct: 303 AARGIDVPALSLVIHASIPTAAETLLHRSGRTGRAGRKGTSVLMVPLNQRRRAERLLQMA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + WE P+ +AI E+D R++ DP+ +++ ++V+ L+ K+D K+AA + + Sbjct: 363 KIQAEWEAVPTADAIAEQDKTRLMHDPILTNAVDDMSDELVNQLVEKYDATKLAAALVGL 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 +RA L E+I P+S+ + R R RA + ++ WF + VG ++A+ +W Sbjct: 423 YRARLPKVEQIRPMSVEAPR-RTERGERAPR-----EEHTMSGEWFKMGVGRTERADPKW 476 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 L+P++CR G+ ++ IG+IR+ + T+ +++ + V Sbjct: 477 LIPLICRLGGVQKREIGSIRIDQEQTYFQIADESV 511 >gi|298291272|ref|YP_003693211.1| DEAD/DEAH box helicase [Starkeya novella DSM 506] gi|296927783|gb|ADH88592.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506] Length = 619 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 263/510 (51%), Positives = 356/510 (69%), Gaps = 6/510 (1%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + +L+ R Y N T VQ A+L P+ +D+LVSAQTGSGKTVA+GLA+A TLL ++RF Sbjct: 6 ALARSLAARDYDNPTPVQLAVLAPEASGRDLLVSAQTGSGKTVAYGLAMAETLLGVSERF 65 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ P AL +APTRELA+QV RE WLYA TG + C+GG+ +E+R L GAH+VV Sbjct: 66 AAATVPQALVVAPTRELALQVQREFAWLYAATGARIVSCVGGMDPRQEQRLLNQGAHVVV 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH+ L++S L+ VLDEADEMLDLGFR+D+EFILD++P +RR L+FSAT+ Sbjct: 126 GTPGRLRDHLERGRLDLSALRVAVLDEADEMLDLGFREDLEFILDATPPERRSLLFSATM 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + ITTLA+ YQ+DA+R+ +AS H+DI+YR + VA ++ ++A+VN+LRY+ +AIV Sbjct: 186 ARGITTLARRYQRDALRIEVASAEGGHADIEYRTMRVAPTEVEHAVVNVLRYYDTPSAIV 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+TR +V R +L E F VALSGELSQ ER++ALQ +RDGRARVC+ATDVAARGID Sbjct: 246 FCNTREAVRRMHAMLQERQFSAVALSGELSQNERNHALQALRDGRARVCVATDVAARGID 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 LP+L LVIHA+L ++ E+L HRSGRTGRAGRKG+SV ++P +RR E L R + W Sbjct: 306 LPNLGLVIHADLPNDAESLQHRSGRTGRAGRKGVSVLLVPPFRRRRTEDLMRALGIKPSW 365 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P+ E IR+ D +R+L+DPL D ++ LLA H PE +AA +R++RAGL Sbjct: 366 SGPPTSEDIRKLDHERMLRDPLVADEPNEEDASAGLALLAAHSPEHLAAALVRLYRAGLP 425 Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489 APEE+ G R D A + GG+ + GS WF L+VG ++ A+ +WL+P++C Sbjct: 426 APEEVAD----PGEPRAARDLAAGRDFGGA--SGAGSVWFRLNVGRRKNADPKWLLPLIC 479 Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 R + R+ IG IR+ + T EVS D Sbjct: 480 RRGNVTRKDIGVIRIFDEETAFEVSLAAAD 509 >gi|254419014|ref|ZP_05032738.1| DbpA RNA binding domain family [Brevundimonas sp. BAL3] gi|196185191|gb|EDX80167.1| DbpA RNA binding domain family [Brevundimonas sp. BAL3] Length = 634 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 279/571 (48%), Positives = 369/571 (64%), Gaps = 10/571 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + + AL +GY T VQ A+L + E+D+LVSAQTGSGKTVAFGLA A TLL Sbjct: 3 FPAVHPALDRALVNKGYAEPTPVQAAVLEGEYAERDLLVSAQTGSGKTVAFGLAAAPTLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + F P APL LAIAPTRELA+QV EL+WLYA +G +A C+GG+ RE R L Sbjct: 63 GDKPIFGPGGAPLCLAIAPTRELAMQVAAELQWLYADSGAKIATCVGGMDARREARALGF 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRL DHI L++S LK VLDEADEMLD+GFR+D+EFILD +P +RR L Sbjct: 123 GVHIVVGTPGRLKDHIDRGNLDLSELKVAVLDEADEMLDMGFREDLEFILDHAPAERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSATI+ I TLAK YQKDAVR++ ++RQH+DI+YRA +A ++ ++A+VN LR++ Sbjct: 183 LFSATIAREIVTLAKRYQKDAVRIDATDKSRQHADIEYRAYRIAPNEIEHAVVNTLRWYE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A A+VFCSTR SV L E F V+LSGE+ Q+ER++ALQ +RDGRARVC+ATDV Sbjct: 243 APRAMVFCSTRDSVRHLQASLLERGFSTVSLSGEMGQRERTDALQALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+DLPDL LVIHAEL N LLHRSGRTGRAG+KG+SV ++P + +R+AERL EA Sbjct: 303 AARGLDLPDLGLVIHAELPMNRAGLLHRSGRTGRAGKKGVSVMLVPHSRRRKAERLMDEA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV-DVLLAKHDPEKIAAGFLR 422 + VW AP+ + IR+ D R+L P F ++ DE +V ++A+ P++IAA +R Sbjct: 363 GIDAVWSGAPTFDEIRKADEGRLLS-PEFFEADVSDEDMIVAKRMIAERTPDEIAAALVR 421 Query: 423 IHRAGLCAPEEIT-PVSLVSGRDRFR----DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 + R APEE++ P S S R R +D A + G R WF L VG + Sbjct: 422 LLRKEQPAPEELSDPGSDRSPVKRERTVRNEDGTAAQPWPGDRLGADDVVWFRLDVGRNK 481 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG 537 A+ +WL+P++CR GI++ IGAIR P+ T E++ R V ++K Sbjct: 482 NADPKWLIPLICRIGGISKPQIGAIRTFPEETRFEIAKTHEKAFREAVAASND-EVKITS 540 Query: 538 GEKPDFRGYKSSGF--KSKNSQDGATKRFKR 566 E P K+ F K ++ + FK+ Sbjct: 541 SEAPTPGSMKAGKFAGAGKPRREDGDRPFKK 571 >gi|218508404|ref|ZP_03506282.1| ATP-dependent RNA helicase protein [Rhizobium etli Brasil 5] Length = 375 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 248/374 (66%), Positives = 297/374 (79%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F + I +AL +RGY LT VQ+++L+PDL D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL ++RF A APLAL IAPTRELA+QV RELEWLY TG V+A C+GG+ + ERR Sbjct: 61 TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ AI LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A NAIVFCSTRA+V+ T F VVALSGEL+Q ERS+ALQ MRDGRARVCIA Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S ++P N +R+AERL Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360 Query: 361 REANVSVVWEPAPS 374 A +S W PS Sbjct: 361 ENAGISAAWARPPS 374 >gi|163741552|ref|ZP_02148943.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis 2.10] gi|161385286|gb|EDQ09664.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis 2.10] Length = 718 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 278/572 (48%), Positives = 366/572 (63%), Gaps = 33/572 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL RGY +LT VQEA+ +L + D+LVSAQTGSGKTV FGLA+A TLL + ++ A Sbjct: 21 QALQARGYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTVGFGLAMAPTLLGDAEKLDRA 80 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 PLAL IAPTRELA+QV REL WLYA+ G V +GG+ + ERR L+ GAHIVV TP Sbjct: 81 DLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERGAHIVVATP 140 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI +N+S ++AVVLDEADEMLDLGFR+D+EFIL SP+ RR LMFSAT+ Sbjct: 141 GRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLMFSATVPTG 200 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ Y KD R+ +E QH+DI+Y+ + VA D +NA++N+LR+H + NAIVFC+ Sbjct: 201 IARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVENAVINVLRFHESPNAIVFCN 260 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TRA V+R T L+ F VVALSGELSQ ERSNALQ +RDGRARVC+ATDVAARGIDLP Sbjct: 261 TRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDVAARGIDLPK 320 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+LVIHA+L S+ E LLHRSGRTGRAGR+G+S ++P + +A RL R A ++ PA Sbjct: 321 LDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKAKGKALRLLRSAKITAETSPA 380 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432 PS + +R RD +R+L D + + + +E V L+ + PE++A +LR+ APE Sbjct: 381 PSADDVRTRDFERLLGDKAWSEPVSENETAPVAELVERFSPEQLAVAYLRLFHDRHSAPE 440 Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492 E++ D + K R F S WF++S G K AE R L+P LC + Sbjct: 441 ELS-------------DPQHDKREREERAPFGPSVWFAVSGGRKAGAEPRRLLPALCNAG 487 Query: 493 GINRQSIGAIRVQPDLTFVE------------VSADGVDLLRRTVKLDKGIQL------- 533 G+ + IGAIRVQ D ++VE V DG++ +LDK L Sbjct: 488 GLTKDDIGAIRVQFDQSYVEVRESSAESFWGAVKHDGLEEGANVTRLDKAPDLPKSPRPQ 547 Query: 534 -KYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564 + GG + D RG++ + S+ G K + Sbjct: 548 GRDGGGFRDDKRGHRGQDRGDRGSERGERKPY 579 >gi|296283638|ref|ZP_06861636.1| DEAD/DEAH box helicase-like protein [Citromicrobium bathyomarinum JL354] Length = 586 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 260/512 (50%), Positives = 349/512 (68%), Gaps = 13/512 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F +P + AL+ERGY T VQ A+L P+ R +D++VSAQTGSGKTVAFGLA+A LL Sbjct: 3 FSELPDTLQTALTERGYSEPTDVQAAVLEPEARGRDLVVSAQTGSGKTVAFGLAVARQLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 EN + A APLAL IAPTRELA+QV REL WLYAK G VA C+GG++ ER+ L++ Sbjct: 63 DENGKVPFAVAPLALVIAPTRELALQVSRELSWLYAKAGGRVATCVGGMNPSAERKALRS 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA IVVGTPGRL DH+ L++S LKAV LDEADEMLD+GFR+++E ILD++P+ RR L Sbjct: 123 GATIVVGTPGRLRDHLERGALDLSALKAVTLDEADEMLDMGFREELETILDATPEGRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LA+ YQ +A+R++ S +R H DI Y AV+V+ + +NA+VN+LRYH Sbjct: 183 LFSATMPKPIEALARRYQNNALRISTVSADRGHGDISYEAVVVSPPEVENAVVNLLRYHE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AI+FC TR V L E F VV+LSGE SQ ER+ ALQ +RD RARVC+ATDV Sbjct: 243 AETAILFCGTREKVRHMHATLQERGFAVVSLSGENSQSERNQALQALRDRRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LV+H E+ + E L HRSGRTGRAGRKG +V V+P + +RR E++ R A Sbjct: 303 AARGIDLPTLSLVVHVEIPRDAETLQHRSGRTGRAGRKGTAVLVVPFSRRRRVEQMLRNA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIAAGFL 421 + W AP EAIR +D R++Q L +++ DE ++VD LLA+ P ++AA + Sbjct: 363 KIDAKWTDAPDREAIRAKDRDRLMQ--TLLTAVEPDEGDTELVDALLAQRTPRELAAMLV 420 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481 HRA + PE+ L++ R ++A K R F+ + WF + +G ++ A+ Sbjct: 421 ASHRAKMPEPED-----LIANTPEARRAAQAEK----HRPGFEDTVWFKMDIGRRRNADP 471 Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 RW++P+LCR I R +GAIR+ PD TF ++ Sbjct: 472 RWILPLLCRRGHITRNEVGAIRIGPDETFFQI 503 >gi|332186811|ref|ZP_08388553.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17] gi|332013144|gb|EGI55207.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17] Length = 580 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 263/510 (51%), Positives = 340/510 (66%), Gaps = 14/510 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F +P V+ ALS RGY T VQ A++ D + +D++VSAQTGSGKTVAFGLA+AS LL Sbjct: 3 FSALPPVLSAALSARGYAAPTPVQAAVIEDDAQGRDLIVSAQTGSGKTVAFGLAMASELL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 D PA AP+AL IAPTRELA+QV RELEWLYA +A C+GG+ RERR L + Sbjct: 63 QGADHLPPAGAPMALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERRALNH 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRL DH+ L++S LK VVLDEADEMLD+GFR+D+E ILD++P +RR L Sbjct: 123 GAHIVVGTPGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDATPTERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LAK YQ +A R+ SE++ H+DI Y+ V VA +D + A+VN+LR H Sbjct: 183 LFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQVVTVAPADIEAAVVNLLRLHE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AI+FC+TR +V L E F VALSGE SQ ER++ALQ +RDGRARVC+ATDV Sbjct: 243 AEVAILFCATRDNVRHLHASLVERGFSAVALSGEHSQNERNHALQALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LVIH E+ + E L HRSGRTGRAGRKG ++ ++P +RR E + R A Sbjct: 303 AARGIDLPGLTLVIHVEIPRDAEALQHRSGRTGRAGRKGTAILIVPYPRRRRVEGMLRGA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + W AP++E IRE+D +R+L L + ++++ LLA+ E IAA +R Sbjct: 363 RIDAEWRRAPTLEEIREQDRERLLTALLAPVEVDEADRELATRLLAEKSAEDIAAALVRA 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 HRA L EE+ R+R R+ F + WF +SVG +Q A+ RW Sbjct: 423 HRAALPQAEELVEGDAPPPRER--------------REGFDDTVWFRMSVGRRQNADPRW 468 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 L+P++CR I R IGAIR+QP+ T EV Sbjct: 469 LLPLICRRGHITRNEIGAIRIQPNETLFEV 498 >gi|163738737|ref|ZP_02146151.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis BS107] gi|161388065|gb|EDQ12420.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis BS107] Length = 713 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/572 (48%), Positives = 365/572 (63%), Gaps = 33/572 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL RGY +LT VQEA+ +L + D+LVSAQTGSGKTV FGLA+A TLL + ++ A Sbjct: 21 QALQARGYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTVGFGLAMAPTLLGDAEKLDRA 80 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 PLAL IAPTRELA+QV REL WLYA+ G V +GG+ + ERR L+ GAHIVV TP Sbjct: 81 DLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERGAHIVVATP 140 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI +N+S ++AVVLDEADEMLDLGFR+D+EFIL SP+ RR LMFSAT+ Sbjct: 141 GRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLMFSATVPTG 200 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ Y KD R+ +E QH+DI+Y+ + VA D +NA++N+LR+H + NAIVFC+ Sbjct: 201 IARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVENAVINVLRFHESPNAIVFCN 260 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TRA V+R T L+ F VVALSGELSQ ERSNALQ +RDGRARVC+ATDVAARGIDLP Sbjct: 261 TRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDVAARGIDLPK 320 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+LVIHA+L S+ E LLHRSGRTGRAGR+G+S ++P + +A RL R A ++ PA Sbjct: 321 LDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKAKGKALRLLRSAKITAETSPA 380 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432 PS + +R RD +R+L D + + + +E V L+ + PE++A +LR+ APE Sbjct: 381 PSADDVRTRDFERLLGDKAWSEPVSENETAPVAELVERFSPEQLAVAYLRLFHDRHSAPE 440 Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492 E++ D + K R F S WF++S G K AE R L+P LC + Sbjct: 441 ELS-------------DPQHDKREREERAPFGPSVWFAVSGGRKAGAEPRRLLPALCNAG 487 Query: 493 GINRQSIGAIRVQPDLTFVE------------VSADGVDLLRRTVKLDKGIQL------- 533 G+ + IGAIRVQ D ++VE V DG++ +LDK L Sbjct: 488 GLTKDDIGAIRVQFDQSYVEVRESSAESFWGAVKHDGLEEGANVTRLDKAPDLPKSPRPQ 547 Query: 534 -KYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564 + GG + D RG++ + + G K + Sbjct: 548 GRDGGGFRDDKRGHRGQDRGDRGGERGERKPY 579 >gi|85373430|ref|YP_457492.1| cold-shock dead-box protein A [Erythrobacter litoralis HTCC2594] gi|84786513|gb|ABC62695.1| cold-shock dead-box protein A [Erythrobacter litoralis HTCC2594] Length = 578 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 259/501 (51%), Positives = 341/501 (68%), Gaps = 9/501 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FEN+P V+GE+L+ERGY T VQ A+ PD + +D++VSAQTGSGKTVAFGLALA LL Sbjct: 3 FENLPPVLGESLAERGYSAPTPVQAAVTAPDAKGRDLIVSAQTGSGKTVAFGLALADELL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 AE A PLAL +APTRELA+QV REL WLYAK G+ +A C+GG+ +ERR L++ Sbjct: 63 AEIGGTPLAEKPLALVVAPTRELALQVSRELGWLYAKAGLRIATCVGGMDASKERRALRS 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGRL DH+ L++S L VVLDEADEMLD+GFRDD+E ILD++P RR L Sbjct: 123 GPAIVVGTPGRLRDHLERGALDLSGLVGVVLDEADEMLDMGFRDDLEEILDAAPDGRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LA+ YQ DA+R+++A ENR H DI Y+A+ VA S+ +NA+VN+LR+H Sbjct: 183 LFSATLPQQIVRLAQRYQTDALRLSLAGENRGHGDIAYQAISVAPSEIENAVVNLLRFHE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AI FC+TR SV R L F VVALSGE SQ ER+ ALQ +RD RARVC+ATDV Sbjct: 243 AETAICFCATRDSVRRLHATLQNRGFGVVALSGEHSQSERNQALQALRDRRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+DLP L LVIH E+ + E L HRSGRTGRAG+KG + ++P N ++R E + R A Sbjct: 303 AARGLDLPTLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAAIIVPYNRRKRVESMLRGA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 ++ W APS + IR++D R+++ D++ + ++ + PE IAA ++ Sbjct: 363 KIAAQWMDAPSAKDIRQQDQARLMEKLTTPTEYDEDDRALASKVMDRMAPEDIAAALVQA 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 HRA L PEE L++ R S+A K R F+ + WF + +G +Q AE RW Sbjct: 423 HRAKLPQPEE-----LLANTPEARAKSKAEK----HRPGFEDTVWFRMGIGRRQNAEPRW 473 Query: 484 LMPMLCRSSGINRQSIGAIRV 504 L+P++CR I R IGAIR+ Sbjct: 474 LLPLICRRGHITRNEIGAIRI 494 >gi|83951704|ref|ZP_00960436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseovarius nubinhibens ISM] gi|83836710|gb|EAP76007.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Roseovarius nubinhibens ISM] Length = 786 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 286/565 (50%), Positives = 380/565 (67%), Gaps = 28/565 (4%) Query: 5 ENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 + +P + + AL+ RGY +LT VQEA+ +PDL D+LVSAQTGSGKTVAFGLA+A TL Sbjct: 21 DTLPMIPPLSNALAARGYDSLTPVQEAMADPDLIGSDLLVSAQTGSGKTVAFGLAMAPTL 80 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 L E + F PA+APLAL +APTRELA QV EL WLYA+TG +A C+GG+ + ERR L+ Sbjct: 81 LDEAEVFGPAAAPLALVVAPTRELAFQVMNELRWLYAETGARIASCVGGMDMRDERRTLE 140 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 GAHIVVGTPGRL DHI L++ L+ VVLDEADEMLDLGFR+D+EF+L+++P+ RR Sbjct: 141 RGAHIVVGTPGRLRDHISRGSLDMDDLRVVVLDEADEMLDLGFREDLEFMLEAAPENRRT 200 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ PAI LA +Q+DA R+N S QH+DI Y+A+ VA + + AI N+LR+H Sbjct: 201 LLFSATVPPAIARLAGQFQRDARRINTVSSTEQHADIAYQALRVAHGEGEAAIFNLLRFH 260 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A+ AIVF +TRA+V+ T LA F VV+LSGELSQ ERS+ALQ MRDGRAR+C+ATD Sbjct: 261 DAEAAIVFANTRAAVNHLTTRLANRGFAVVSLSGELSQSERSHALQAMRDGRARICVATD 320 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGIDLP+L LVIHA+L N E+L+HRSGRTGRAGRKG+S ++ ++AER+ + Sbjct: 321 VAARGIDLPNLNLVIHADLPKNTESLMHRSGRTGRAGRKGVSALIVAPRDLKKAERILKF 380 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 A ++ W PS +AI E+D R+L DP + + E LLA+ PE + +LR Sbjct: 381 AKITAEWTLPPSADAILEQDENRLLADPAWETPLTEAETAFAARLLAEQSPEAVVGAYLR 440 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 + R APEE++ + +G+ R D F ++W SLSVG K +AEAR Sbjct: 441 LFRTRHAAPEELS--APEAGKAAPRRD----------HAEFGPATWISLSVGRKDRAEAR 488 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQLKYLGG 538 WL+P+L RS +++ +IGAIRVQ T+VE+S V D L L+ GI ++ L Sbjct: 489 WLLPLLLRSGNLDKANIGAIRVQDGETYVELSTPAVSGFFDALDNNT-LEDGITVRQL-D 546 Query: 539 EKPDF--------RGYKSSGFKSKN 555 E PD RG + +G K ++ Sbjct: 547 EMPDLGRPAPKPHRGARPAGGKPRH 571 >gi|310830312|ref|YP_003965412.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare Y25] gi|308753218|gb|ADO44361.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare Y25] Length = 672 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 274/565 (48%), Positives = 375/565 (66%), Gaps = 13/565 (2%) Query: 5 ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64 +NI + ALS+RGY LT+VQ+A+L P+ +D+LVSAQTGSGKTVAFG+A+A LL Sbjct: 4 QNIAAPLAAALSQRGYETLTAVQQAVLAPEADGRDLLVSAQTGSGKTVAFGIAVAPDLLG 63 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 +++ + P+AL IAPTRELA+QV +EL WLYA G +A C+GG+ ERR L Sbjct: 64 DDNILPLNTPPVALFIAPTRELALQVAQELTWLYANAGAQIATCVGGMDYRTERRALARL 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVVGTPGRL DHI GL++S L+ VLDEADEMLDLGFRDD+++IL ++P+ RR LM Sbjct: 124 PQIVVGTPGRLRDHIDRGGLDLSELRVTVLDEADEMLDLGFRDDLQYILQAAPEDRRTLM 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LA+++Q DA+R+ E +QH+DI Y+A+ V + DR+NAI N+LR++ + Sbjct: 184 FSATVPREIEKLARDFQNDALRLETRGEAKQHNDISYQALSVTMRDRENAIFNMLRFYES 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AI+FC TRA+V+ ++ F+VVALSGELSQQER+NALQ +RDGRA VCIATDVA Sbjct: 244 RTAIIFCKTRANVNDLLSRMSGRGFRVVALSGELSQQERTNALQALRDGRANVCIATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGIDLP LELVIH +L +N E LLHRSGRTGRAG KG+S ++ ++A+RL A Sbjct: 304 ARGIDLPGLELVIHYDLPTNAETLLHRSGRTGRAGAKGVSALIVTPGDFKKAQRLLSFAK 363 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424 V+ W APS E + RD R+++ P + D+ + + LLA+ E+I+A F+++ Sbjct: 364 VTAEWGKAPSAEEVSARDDLRMVEHPALTTKL--DDMTVANDLLARFGAEQISAAFVQLW 421 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 R G APE +T V+ + + A + S F S WFSLS G +AEARWL Sbjct: 422 REGRPAPEALTVVNTPTP-----GAAPAPREPRTSPREFGASVWFSLSAGHVDRAEARWL 476 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 +P +C + GI R +IGAIRV+ TFV+++A+ +++ G+ L + GE P+ Sbjct: 477 LPKICDAGGITRDAIGAIRVRESETFVQIAANEAGRFANVSEIEPGLTLTQIDGE-PNLE 535 Query: 545 GYKSSGFKSKNSQDGATKRFKRFKG 569 +SSG K + GA K K KG Sbjct: 536 -QRSSGPK----KFGAGKPGKFAKG 555 >gi|114327198|ref|YP_744355.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1] gi|114315372|gb|ABI61432.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1] Length = 731 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 265/540 (49%), Positives = 351/540 (65%), Gaps = 17/540 (3%) Query: 3 IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 +F + + AL +GY +LT VQ+A+L D E+D+LVSAQTGSGKTVA+GLALA TL Sbjct: 46 LFPALHPTLKAALDAKGYTSLTPVQDAVLTADAAERDLLVSAQTGSGKTVAYGLALADTL 105 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 L ++R A APLAL +APTRELA+QV +EL WLY G V CIGG+ RE + L+ Sbjct: 106 LGADERLGQAGAPLALIVAPTRELAMQVQQELLWLYGPAGARVVSCIGGMDARREAQALE 165 Query: 123 NGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G HIVVGTPGRLCDH+ G+G LN+S L+AVVLDEADEMLDLGFRD++E ILD++P +RR Sbjct: 166 RGCHIVVGTPGRLCDHL-GRGRLNLSRLRAVVLDEADEMLDLGFRDELEEILDATPAERR 224 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSATI+ I LAK YQ +A+R++ S N+ H+DIDYR V V + +++VN+LR+ Sbjct: 225 TLLFSATIAREIAALAKRYQTNALRIDTVSRNKPHADIDYRVVRVLPHEARHSVVNVLRF 284 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + A A+VFC TR V F L E F VALSGELSQ ERS AL ++R+G+ARVC+AT Sbjct: 285 YDAPIAMVFCGTREEVRHFQASLMERGFSSVALSGELSQTERSRALHLLREGQARVCVAT 344 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+DLP L+LVIHA+L +N LLHRSGRTGRAGRKG+SV + P N QR+A++L Sbjct: 345 DVAARGLDLPALDLVIHADLPTNSATLLHRSGRTGRAGRKGVSVLIAPVNRQRKADQLLH 404 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 A + W P P+VE I RD +R+L+ P I DE++ +L+ D E +A L Sbjct: 405 TAGIRAEWTPVPTVEEISIRDRERMLESPALSAPISDDEREAARILMEGRDAEALAVAVL 464 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG------------GGSRDN---FKGS 466 R+HR L PE++ V D + +V RDN + + Sbjct: 465 RLHRGRLPEPEDVQVVHERPSNSERGDRPQRERVRDRDRSDQDRPARAPRRDNDGEARST 524 Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 WF LSVG A+ +W++P+LCR+ I + IGAIR+ TF E+ + D ++ Sbjct: 525 RWFKLSVGRNDNADPKWIVPLLCRAGHIRKPDIGAIRIMETETFFEIDSARADTFSSAIE 584 >gi|148260838|ref|YP_001234965.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium cryptum JF-5] gi|146402519|gb|ABQ31046.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5] Length = 574 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 262/518 (50%), Positives = 346/518 (66%), Gaps = 20/518 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + P + AL+ RGY + T+VQ A+L P+ +D+LVSAQTGSGKTVA+GLA A+ Sbjct: 4 MPFYVETP-ALQHALAARGYADPTAVQSAVLEPEAEGRDLLVSAQTGSGKTVAYGLAFAA 62 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L E D PA APLAL IAPTRELA+QV EL WLY TG V C+GG+ RE+R Sbjct: 63 TILDE-DVLPPAGAPLALIIAPTRELAIQVHAELAWLYEHTGASVVSCVGGMDPRREQRA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L +G HIVVGTPGRL DHI + L++ L+ VVLDEADEMLDLGFRD++EFIL +SP R Sbjct: 122 LASGCHIVVGTPGRLQDHIERRHLDLGRLRVVVLDEADEMLDLGFRDELEFILGASPADR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R L+FSATI+ I LA+ YQ+DA+R++ + N+ H+DI+YRA+ +A + ++ +VN+LR Sbjct: 182 RTLLFSATIAREIAALARQYQRDALRIDTVARNQPHADIEYRAIRIAAHEVEHGLVNLLR 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +H +VFCSTR SV + L E F VALSGELSQ ER+ ALQ +RDGRARVCIA Sbjct: 242 FHEGAGCLVFCSTRESVRQLYGRLQERGFAAVALSGELSQSERNAALQSLRDGRARVCIA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+DLP+L+LVIHA+L +N LLHRSGRTGRAGRKG+ + ++P +RRAE L Sbjct: 302 TDVAARGLDLPNLDLVIHADLPANKATLLHRSGRTGRAGRKGLCLLMVPDRSRRRAEVLL 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 AN+ +WE P+ EAIR RD R+L DP+ ++ +E + LLA + +A Sbjct: 362 ASANIRAIWEAPPTAEAIRARDHARLLTDPVLTEAPLDEEIALARELLANRSADVVATAL 421 Query: 421 LRIHRAGLCAPEEITPVSLV-----SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 +R++RA L APEEI P V + R +D RA WF VG Sbjct: 422 IRLYRARLPAPEEIAPQPEVLPRPAARRAAGAEDGRAM-------------VWFRCDVGR 468 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++KA+ +WL+P +CR G+ ++ IGAIR+ T E+ Sbjct: 469 RKKADPKWLLPAICRVGGVTKRDIGAIRIFDHETRFEI 506 >gi|167646147|ref|YP_001683810.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp. K31] gi|167348577|gb|ABZ71312.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31] Length = 776 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 267/525 (50%), Positives = 354/525 (67%), Gaps = 24/525 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ +GY+ T VQ A+L + +D+LVSAQTGSGKTVAFGLA A+TLL + ++F+ A Sbjct: 13 ALAAQGYLEPTPVQAAVLEDEAIGRDLLVSAQTGSGKTVAFGLAAATTLLGDAEKFAKAG 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P+ L IAPTRELA+QV REL WLYA G VV C+GG+ RE+R L GAHIVVGTPG Sbjct: 73 LPMCLVIAPTRELAIQVNRELAWLYADAGAVVVNCVGGMDARREQRALNFGAHIVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI L++S LK VLDEADEMLD+GFR+D+EFILD++P +RR L+FSAT++ I Sbjct: 133 RLRDHIERGHLDLSELKVAVLDEADEMLDMGFREDLEFILDAAPSERRTLLFSATLAREI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK+YQ DA+R++ N H DI+YRAV VA ++ ++A+VN+LRY + A+VFC+T Sbjct: 193 VQLAKSYQNDALRIDTVGRNEPHRDIEYRAVRVAPNEVEHAVVNLLRYFESPGALVFCNT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R SV L E F VV LSGELSQ+ER++ALQ +RDG ARVC+ATDVAARG+DLPDL Sbjct: 253 RESVRALHSKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARGLDLPDL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 LVIHAEL N LLHRSGRTGRAG+KG+S V+P +R+AE+L A V W AP Sbjct: 313 GLVIHAELPVNKATLLHRSGRTGRAGKKGVSALVVPYTRRRKAEQLLMAAGVEGHWGGAP 372 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433 + + IR +D +R+L DP+F +++ ++ + + +LAK P +IAA +R RA L APEE Sbjct: 373 TADEIRLKDTERLLDDPIFDEAVVEEDTALAEAMLAKRTPLEIAAALIRTRRAKLPAPEE 432 Query: 434 IT----------PVSLVSGR------DRFRDDSRAFKVGGG------SRDNFKGSSWFSL 471 I P S +G DRF D R + GG R + S+WF L Sbjct: 433 IYDDPRHGADPGPRSRDAGPRSNDAGDRFAD--RGPRDFGGDRPEREPRSDMANSAWFRL 490 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + G + A+ +WL+P++CR I ++ IG+IR+ T E+SA+ Sbjct: 491 NTGRRNNADPKWLIPLICRLGHITKKDIGSIRIFDYDTKFEISAE 535 >gi|326404232|ref|YP_004284314.1| putative ATP-dependent RNA helicase [Acidiphilium multivorum AIU301] gi|325051094|dbj|BAJ81432.1| putative ATP-dependent RNA helicase [Acidiphilium multivorum AIU301] Length = 571 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 259/513 (50%), Positives = 343/513 (66%), Gaps = 10/513 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + P + AL+ RGY + T+VQ A+L P+ +D+LVSAQTGSGKTVA+GLA A+ Sbjct: 1 MPFYVETP-ALQHALAARGYADPTAVQSAVLEPEAEGRDLLVSAQTGSGKTVAYGLAFAA 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L E D PA APLAL IAPTRELA+QV EL WLY TG V C+GG+ RE+R Sbjct: 60 TILDE-DVLPPAGAPLALIIAPTRELAIQVHAELAWLYEHTGASVVSCVGGMDPRREQRA 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G HIVVGTPGRL DHI + L++ L+ VVLDEADEMLDLGFRD++EFIL +SP R Sbjct: 119 LAGGCHIVVGTPGRLQDHIERRHLDLGRLRVVVLDEADEMLDLGFRDELEFILGASPADR 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R L+FSATI+ I LA+ YQ+DA+R++ + N+ H+DI+YRA+ +A + ++ +VN+LR Sbjct: 179 RTLLFSATIAREIAALARQYQRDALRIDTVARNQPHADIEYRAIRIAAHEVEHGLVNLLR 238 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +H +VFCSTR SV + L E F VALSGELSQ ER+ ALQ +RDGRARVCIA Sbjct: 239 FHEGAGCLVFCSTRESVRQLYGRLQERGFAAVALSGELSQSERNAALQSLRDGRARVCIA 298 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+DLP+L+LVIHA+L +N LLHRSGRTGRAGRKG+ + ++P +RRAE L Sbjct: 299 TDVAARGLDLPNLDLVIHADLPANKATLLHRSGRTGRAGRKGLCLLMVPDRSRRRAEVLL 358 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 AN+ +WE P+ EAIR RD R+L DP+ ++ +E + LLA + +A Sbjct: 359 ASANIRAIWEAPPTAEAIRARDHARLLTDPVLTEAPLDEEIALARELLANRSADVVATAL 418 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 +R++RA L APEEI P V R ++ + WF VG ++KA+ Sbjct: 419 IRLYRARLPAPEEIAPQPEVL--------PRPAARRAAGAEDGRAMVWFRCDVGRRKKAD 470 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +WL+P +CR G+ ++ IGAIR+ T E+ Sbjct: 471 PKWLLPAICRVGGVTKRDIGAIRIFDHETRFEI 503 >gi|307297146|ref|ZP_07576960.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] gi|306877450|gb|EFN08680.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] Length = 584 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 260/537 (48%), Positives = 355/537 (66%), Gaps = 17/537 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE++P ++ +AL+ +GY LT VQ + P+ +D++VSAQTGSGKTVAFGLA+A LL Sbjct: 3 FEHLPPLLSDALTRKGYEKLTPVQAEVTQPEAEGRDLIVSAQTGSGKTVAFGLAMAGELL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E R A PLALAIAPTRELA+QV RELEWLY + +A C+GG+ +ERR L + Sbjct: 63 GEQSRLPQAGKPLALAIAPTRELALQVSRELEWLYGEARARIATCVGGMDAAKERRALSH 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRL DH+ L++S LK VVLDEADEMLD+GFR+D+E ILD +P++RR L Sbjct: 123 GAHIVVGTPGRLRDHLERGALDLSDLKTVVLDEADEMLDMGFREDLEEILDGAPQERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LAK YQKDA+R++ S+ R H DI Y+A+ VA +D +NA+VN+LRYH Sbjct: 183 LFSATMPKPIVALAKRYQKDALRISTVSDERGHGDISYQALTVAPADIENAVVNLLRYHE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AI+FC+TR +V L E F VALSGE SQ ER++ALQ +RD RARVC+ATDV Sbjct: 243 AETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP+L LV+H EL + E + HRSGRTGRAG+KG +V ++P +RR E + R A Sbjct: 303 AARGIDLPNLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLRGA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + V W PS EAI+E+D R+ + + + + + LL ++IAA ++ Sbjct: 363 KIPVEWGTPPSKEAIQEQDNARLREKLMERAELDEQDWALGAELLEAKSAKEIAAMLVKS 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 RA L APEE+ D S A + G R F+ + WF + +G Q A+ RW Sbjct: 423 ARAALPAPEELL------------DASEAPQRRDGPRPGFEDTVWFRMDIGRSQNADPRW 470 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKL-DKGIQLKY 535 ++P++CR ++RQ IGAIR+ T E +++ V L+RT + D+G ++ + Sbjct: 471 ILPLICRRGHVSRQDIGAIRIAAHETLFEIPSAIASRFVSALKRTGEASDEGAEVSF 527 >gi|148256261|ref|YP_001240846.1| putative DEAD-box cold-shock protein, ATP-independent RNA helicase [Bradyrhizobium sp. BTAi1] gi|146408434|gb|ABQ36940.1| Putative DEAD-box cold-shock protein, ATP-independent RNA helicase [Bradyrhizobium sp. BTAi1] Length = 656 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 270/530 (50%), Positives = 359/530 (67%), Gaps = 18/530 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M +P + AL+ER Y T VQ A+L+ + ++D+LVSAQTGSGKTVA+GLA+A+ Sbjct: 1 MSFPATVPP-LARALAERNYEQPTPVQLAVLDDEAVDRDLLVSAQTGSGKTVAYGLAMAT 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 LL + +RF ASAPLAL +APTRELA+QV REL WLY G V C+GG+ RE+R+ Sbjct: 60 NLLGDAERFERASAPLALIVAPTRELALQVQRELAWLYQHAGARVVSCVGGMDPRREQRE 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDH+R L+IS L+AVVLDEADEML+LGFR+D+EFIL ++P+ R Sbjct: 120 LEAGAHIVVGTPGRLCDHLRRGRLDISDLRAVVLDEADEMLNLGFREDMEFILKTTPETR 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R L+FSAT I LAK YQ DA R+ + + H+DI+YRAV +A D ++A+VN+LR Sbjct: 180 RTLLFSATFPRGIVALAKQYQDDAFRIEVEGDEGGHADIEYRAVRIAPGDAEHAVVNLLR 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ + +AIVFC+TR +V L E F VVALSGEL+Q ER+ ALQ +RDGR+RVC+A Sbjct: 240 FYESPSAIVFCNTREAVRHLQAALLERGFSVVALSGELTQNERTLALQSLRDGRSRVCVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDL +L+LVIHAEL ++PE + HRSGRTGRAGRKG+SV ++P +RRAE L Sbjct: 300 TDVAARGIDLANLDLVIHAELPNDPEVMQHRSGRTGRAGRKGVSVLLVPPARRRRAETLL 359 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + VW AP + IR D +R+L DP+ + +++ + LLA+ PE+IAA Sbjct: 360 NLAGIEAVWGTAPQADEIRRLDHERMLHDPVLSEETTAEDQALAQALLAERSPEEIAAAL 419 Query: 421 LRIHRAGLCAPEEITPVSLVSGR---DRFRDDSRA------------FKVGGGSRDNFKG 465 R++RA L PE+I + GR +R RD+ R K G S + G Sbjct: 420 ARLYRARLPPPEDILDPAEERGRGRHERDRDNGRPGRGEERPPPVPRTKTGKPSARHGMG 479 Query: 466 --SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 S WF ++G K+ AEARWL+PM+CR GI + IGAI++ T E+ Sbjct: 480 EPSVWFRAAIGRKKNAEARWLLPMICRRGGIEKLDIGAIKISDTTTEFEI 529 >gi|114799571|ref|YP_759282.1| DEAD-box ATP dependent DNA helicase [Hyphomonas neptunium ATCC 15444] gi|114739745|gb|ABI77870.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Hyphomonas neptunium ATCC 15444] Length = 708 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 266/552 (48%), Positives = 351/552 (63%), Gaps = 31/552 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + E +P + A+ ERGY LT VQ A P+L +D+LVSA+TGSGKTVAFGLA+A+ Sbjct: 1 MNLPETLPAALRAAIHERGYETLTEVQAAATAPELEGRDLLVSARTGSGKTVAFGLAIAN 60 Query: 61 TLLAENDRF-SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 LL D F A+ PL L IAPTRELA+QV REL WLYA T +A C+GG+ + ERR Sbjct: 61 ELLGGEDTFLIRAATPLGLIIAPTRELALQVARELRWLYANTNAEIATCVGGMDMRDERR 120 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ GAHIVVGTPGRL DHI + S ++AVVLDEADEMLDLGFR+++E IL+ +PK+ Sbjct: 121 ALERGAHIVVGTPGRLVDHINRGSFDTSAIRAVVLDEADEMLDLGFREELELILEDTPKE 180 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 RR LMFSAT+ I LA YQK+ +R+ S+ H+DI Y A++VA D +NAIVNI+ Sbjct: 181 RRTLMFSATVPKGIAALATRYQKNGLRITTDSDTTAHADIAYEALVVAPGDEENAIVNIV 240 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R+ ++AIVFCSTRASV+ L F VVALSGE SQ+ER+NAL +R GRARVCI Sbjct: 241 RHSDTESAIVFCSTRASVNHLVARLGNRGFSVVALSGEFSQKERANALSSLRSGRARVCI 300 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARG+DLP L+LVIHA+L +P LLHRSGRTGRAGRKG+S ++ +RR ERL Sbjct: 301 ATDVAARGLDLPKLDLVIHADLPRDPATLLHRSGRTGRAGRKGISTLIVAPKARRRVERL 360 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 ++A V W PS + + RD R+L D + + E +V L+A+H PE+IA Sbjct: 361 LQDAKVEARWGRPPSADEVINRDDTRLLADTALTNPMADKEADLVARLMAEHTPEQIATA 420 Query: 420 FLRIHRAGLCAPEEI----------TPVSLVSGRDRFRD-DSRAFKVGGGSRD------- 461 F+R RAG APE++ P R ++D RA + R+ Sbjct: 421 FIRKARAGRTAPEDLRDVDDRPPARKPREERGDRGDWQDRPQRAERAPREPREWGEREPR 480 Query: 462 ------------NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509 + G+ W +++VG K+ A+ +WL+PMLC++ I+R IG IR+ T Sbjct: 481 EPRAPRPQRERASLDGAVWIAINVGRKKNADPKWLLPMLCKAGDIDRDQIGQIRINNGNT 540 Query: 510 FVEVSADGVDLL 521 VE++ +G L Sbjct: 541 HVELTPEGAQRL 552 >gi|114569451|ref|YP_756131.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris MCS10] gi|114339913|gb|ABI65193.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10] Length = 787 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 262/530 (49%), Positives = 358/530 (67%), Gaps = 10/530 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + I + AL ++GY LT VQ A++ + +D+LVSAQTGSGKT AFG+A+A Sbjct: 1 MTLNPRIAPALAAALEKKGYAALTEVQSAVIAEEAEGRDLLVSAQTGSGKTAAFGMAMAK 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL ++D+F+ P+AL +APTRELA+QV REL WLY + +A C+GG+ ER+ Sbjct: 61 TLLGDDDQFNRPDLPMALIVAPTRELALQVQRELAWLYGEARGQIASCVGGMDPRAERKA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G HIVVGTPGRL DHI L++S LKAVVLDEADEMLD GFR+D+E+ILD++P R Sbjct: 121 LERGCHIVVGTPGRLRDHIERGALDMSQLKAVVLDEADEMLDFGFREDLEYILDAAPASR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R L+FSAT+ AI +A+ +QKDA+R++ SE QH+DI+YRA+ VA SDR+NAI+N+LR Sbjct: 181 RTLLFSATVPRAIADIARRFQKDALRISTVSERGQHADIEYRALSVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A+ AI+FC+TR +V+R F VALSGEL+Q+ER++ALQ +RDGRARVC+A Sbjct: 241 YYDAERAIIFCATREAVNRLAARFGNRGFAAVALSGELTQKERTHALQALRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG KG+ ++P + RA RL Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDVLLHRSGRTGRAGAKGVCAIIVPHTRRGRANRLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 R+A + W APS + +R RD +R++ DP+ +++ K D LL K E++AA F Sbjct: 361 RDAKLQAEWAEAPSSDDVRARDRERLMADPILTEAVDEAMKVDTDALLEKFTAEQLAAAF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 LR A L + E+ L+SG D + R+NFK S WF LS G K KAE Sbjct: 421 LRARLATLPSAED-----LLSGPAAQND-----RPERKPRENFKASVWFRLSAGRKAKAE 470 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530 RWL+P++CR + ++ IG+I++ T E+ A+ D + + + G Sbjct: 471 PRWLLPLICRLGHVTKREIGSIQIGETETRFEIDAEHADRFAKALAENGG 520 >gi|170742785|ref|YP_001771440.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium sp. 4-46] gi|168197059|gb|ACA19006.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46] Length = 545 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 264/501 (52%), Positives = 330/501 (65%), Gaps = 7/501 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F +P + AL RGY T VQ A+L D +D+LVSAQTGSGKTVA+GLALA TLL Sbjct: 3 FPPLPAPLARALDARGYDEPTPVQAAVLEADHAGRDLLVSAQTGSGKTVAYGLALAETLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E + F APLAL IAPTRELA+QV REL WLY G V C+GG+ RE R L Sbjct: 63 GEAEAFGAPGAPLALVIAPTRELALQVHRELAWLYGAAGARVVSCVGGMDPRRESRALAE 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRL DH+ + L+ S L+AVVLDEADEMLDLGFR+D+EFIL ++P +RR L Sbjct: 123 GVHIVVGTPGRLRDHLERRNLDPSRLRAVVLDEADEMLDLGFREDLEFILGATPVERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LA++YQ++A R+ +A E R H+DI+YRAV + + + +VN LR Sbjct: 183 LFSATLPKGIVALAEHYQREARRIAVAGERRGHADIEYRAVRILPRETELVVVNTLRLVE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AIVFC+TR +V VL E F VALSGEL Q ER+ ALQ +RDGRARVC+ATDV Sbjct: 243 ARTAIVFCNTRNAVRHLQAVLTERGFAAVALSGELGQGERNAALQALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LVIHAEL + E L HRSGRTGRAGRKG+SV ++P + +R+AE L +A Sbjct: 303 AARGIDLPGLGLVIHAELPHDAEVLQHRSGRTGRAGRKGISVLLVPGSRRRKAEELMAQA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 V VW P + IR D +R+L DPL + +++ M LLA+ E +AA +R Sbjct: 363 GVVPVWSGPPPADEIRALDQERLLVDPLLTEETSEEDRAMAQALLAQRSAEDLAAALVRA 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 +RA L APEE+T SGR G R S WF L+VG + A+ R Sbjct: 423 YRARLPAPEEVTDPGFASGRPTAARRE-------GPRPALGPSVWFRLNVGRRDNADPRR 475 Query: 484 LMPMLCRSSGINRQSIGAIRV 504 L+PMLCR GI R+ +GAIR+ Sbjct: 476 LLPMLCRRGGITREEVGAIRI 496 >gi|162146723|ref|YP_001601182.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl 5] gi|161785298|emb|CAP54844.1| putative cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl 5] Length = 596 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 260/519 (50%), Positives = 343/519 (66%), Gaps = 3/519 (0%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F I AL RGY T VQ+A+L+ +D+LVSAQTGSGKTVAFGLA+A TLL Sbjct: 3 FPETHPAIRRALDARGYEEPTPVQKAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +RF PA APLA+ IAPTRELA+QV REL WLYA G + CIGG+ RE R L+ Sbjct: 63 GGAERFGPAGAPLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGMDARREARALEI 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH L +S L+ VVLDEADEMLDLGFRD+++ +LD+ P RR L Sbjct: 123 GAHIVVGTPGRLCDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSATI+ I TLA+ YQ+DA+R++ S RQH+DI YRAV+ + A+VNILR+ Sbjct: 183 LFSATIAKDIATLARRYQRDALRIDTLSGARQHADITYRAVMADPREIIPAVVNILRFTD 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + A+VFC+TR V L E F VALSGEL Q ER+ A++ +R G+ARVC+ATDV Sbjct: 243 SPTAMVFCATRELVRHMQGALLERGFSSVALSGELGQSERTRAIESLRTGQARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P L LV+HA L ++ LLHRSGRTGRAGRKG+ ++P +M+RRAERL A Sbjct: 303 AARGIDIPALSLVVHASLPTDSATLLHRSGRTGRAGRKGVCALIVPVSMRRRAERLLTMA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 VS W P+ EAIR +DA+R+L DP+ + ++ +V L E++AA L++ Sbjct: 363 KVSAEWTAVPTAEAIRAQDAERLLTDPILTEGAAPGDEDLVARLAENRSAEQLAAALLQM 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---GSSWFSLSVGSKQKAE 480 +RA L PE+I P+ + + R D K G D+ +WFS+SVG + KA+ Sbjct: 423 YRARLPDPEDIRPLRVEAPRAPREGDYARRKEQGPREDHAPRGGPGAWFSMSVGRQDKAD 482 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 +WL+P++CR G+ + IGAIR+ D T E++ + + Sbjct: 483 PKWLVPLICRLGGVRKNDIGAIRIADDHTLFEIATESAE 521 >gi|300021887|ref|YP_003754498.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888] gi|299523708|gb|ADJ22177.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 652 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 271/543 (49%), Positives = 361/543 (66%), Gaps = 15/543 (2%) Query: 3 IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 F ++ +G ALS RGY T+VQ A+L + +D+LVSAQTGSGKTVAFGLA+ASTL Sbjct: 2 TFPSVHPALGRALSARGYSAPTAVQLAVLEANTVGRDLLVSAQTGSGKTVAFGLAMASTL 61 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 L E +R S A+ PLAL IAPTRELA+QV REL+WLYA TG V C+GG+ E R L Sbjct: 62 LGEAERLSQAAEPLALIIAPTRELAMQVQRELDWLYADTGARVVTCVGGMDARAEARQLG 121 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 GAHIVVGTPGRL DH+ + L+++ L AVVLDEADEMLDLGFR+D+EFILD++P+ R+ Sbjct: 122 FGAHIVVGTPGRLRDHLERRRLDLTKLAAVVLDEADEMLDLGFREDLEFILDATPEGRQT 181 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ I LA+ YQ+DAVR+ N QH+DIDYRA+ +A +D +NAIVN+LR+H Sbjct: 182 LLFSATMPREIEALARRYQRDAVRIETVKRNEQHADIDYRAIRIAPADTENAIVNVLRFH 241 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A A+VFCSTR +V R L E F VALSGEL+Q ER++ALQ +RD RARV +ATD Sbjct: 242 EADAALVFCSTREAVKRTHARLLERGFAAVALSGELTQNERTHALQALRDSRARVLVATD 301 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+DLP L LVIHA+L +N E LLHRSGRTGRAG KG+SV ++P N +R+A+ L Sbjct: 302 VAARGLDLPALALVIHADLPNNAETLLHRSGRTGRAGNKGLSVLIVPFNRRRKADALLAA 361 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 A + V W AP+ E IR RD +R L +F D D+ + L A ++IA +R Sbjct: 362 AKLKVTWGSAPTSEEIRARDQERFLASSIFTDPATNDDLNLSQSLQANRSADEIALALVR 421 Query: 423 IHRAGLCAPEEIT-----PVSLVSGRDRFRD-DSRA------FKVGGGSRDNFKGSSWFS 470 +HRA L APE+++ P R+ D RA + RD+ + WF Sbjct: 422 MHRAQLPAPEDLSDDPGPPQRRDDRARAPRERDERAGLRPKDHRSTRPVRDHGREMVWFR 481 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL---RRTVKL 527 + +G ++ AE RWL+P+LCR+ + + IG+I++ T +++A+ D R +K Sbjct: 482 IDIGRERNAEPRWLLPLLCRAGNVTKAEIGSIKIFDRDTRFQIAAEFADTFADAARAMKP 541 Query: 528 DKG 530 ++G Sbjct: 542 NEG 544 >gi|220922880|ref|YP_002498182.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219947487|gb|ACL57879.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans ORS 2060] Length = 545 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 260/503 (51%), Positives = 332/503 (66%), Gaps = 11/503 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F +P + AL RGY + T VQ A+L P + +D+LVSAQTGSGKTVA+GLA+A TLL Sbjct: 3 FPPVPAPLARALDARGYADPTPVQAAVLEPAVAGRDLLVSAQTGSGKTVAYGLAMADTLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + P APLAL IAPTRELA+QV REL WLY G VA C+GG+ RE R L Sbjct: 63 DGGETLPPPGAPLALVIAPTRELALQVHRELSWLYGAAGARVAACVGGMDPRRESRLLGE 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRL DH+ + L+ S ++A VLDEADEMLDLGFR+D+EFIL ++P +RR L Sbjct: 123 GVHIVVGTPGRLRDHLERRNLDPSRMRATVLDEADEMLDLGFREDLEFILGATPAERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LA++YQ++A+R+ +A E R H+DI+YRA+ + + + +VN LR Sbjct: 183 LFSATLPKGIVALAEHYQREALRIAVAGETRGHADIEYRALRILPRETELVVVNTLRLVE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AIVFC+TR +V VL E F VALSGEL Q ER+ ALQ +RDGRARVC+ATDV Sbjct: 243 ARTAIVFCNTRNAVRHLQAVLTERGFTAVALSGELGQGERNAALQALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LVIHAEL + E L HRSGRTGRAG+KG+SV ++P + +R+AE L A Sbjct: 303 AARGIDLPGLGLVIHAELPHDAEVLQHRSGRTGRAGQKGISVLLVPPSRRRKAEELMARA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 V VW P + IR D +R+L DPL D +++ M LLA+ E +AA +R Sbjct: 363 GVVPVWSGPPPADEIRALDQERLLADPLLTDETSEEDRAMAQALLARCSAEDLAAALVRA 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRF--RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481 +RA L APEE+T +GR RD RA S WF L+VG + A+ Sbjct: 423 YRARLPAPEEVTDPGFPTGRPAPARRDKPRA---------PLGPSVWFRLNVGRRDNADP 473 Query: 482 RWLMPMLCRSSGINRQSIGAIRV 504 R L+PMLCR G+ R +GAIR+ Sbjct: 474 RRLLPMLCRRGGVTRDEVGAIRI 496 >gi|87200597|ref|YP_497854.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM 12444] gi|87136278|gb|ABD27020.1| DEAD/DEAH box helicase-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 590 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 265/533 (49%), Positives = 350/533 (65%), Gaps = 20/533 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F N+PQ + AL GY LT VQ A+ + +D++VSAQTGSGKTVAFGLA+A LL Sbjct: 17 FANLPQPLAAALEGHGYTALTPVQSAVTEAEAHGRDLVVSAQTGSGKTVAFGLAMAGELL 76 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + A+APLAL +APTRELA+QV REL WLYA T +A C+GG+ RERR L + Sbjct: 77 GDEATLPFATAPLALVVAPTRELALQVSRELTWLYAPTQARIATCVGGMDPSRERRALSH 136 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRL DH+ L++S L+ VVLDEADEMLD+GFR+D+E +LD++P+ RR L Sbjct: 137 GAHIVVGTPGRLRDHLERGALDLSALRCVVLDEADEMLDMGFREDLEELLDATPEGRRTL 196 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LA+ YQ+DA+R++ E R H DI YRAV VA ++ + A+VN+LR+H Sbjct: 197 LFSATMPKPIEALARRYQRDALRISTVGEARGHGDIAYRAVAVAPAEIEAAVVNLLRFHE 256 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ A++FC+TR +V R L E F VALSGE SQ ER+NALQ +RD RARVC+ATDV Sbjct: 257 AETAMLFCATRDNVRRLHATLVERGFTAVALSGEHSQSERNNALQALRDRRARVCVATDV 316 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LV+H E+ + E L HRSGRTGRAG+KG +V ++P +RR E + R A Sbjct: 317 AARGIDLPSLSLVVHVEIPRDAETLQHRSGRTGRAGKKGTAVLIVPFPRRRRVEMMLRGA 376 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM--VDVLLAKHDPEKIAAGFL 421 ++ W P+ EAIR +D +R+L+ L ++ DE M LL + E++AA + Sbjct: 377 RINADWVDVPTPEAIRAQDRERLLE--TILAPVETDEADMEIARTLLEQRTAEELAAALV 434 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481 R HRA L PEE L+SG D R + R F+ WF + VG +Q A+ Sbjct: 435 RAHRAALPQPEE-----LLSGTDEGRKQA-------THRAGFEDVVWFRMDVGRRQNADP 482 Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS---ADG-VDLLRRTVKLDKG 530 RW++P LCR +RQ IGAIR+ P+ T+ +V AD D +RRT + G Sbjct: 483 RWILPTLCRRGHASRQEIGAIRIAPNDTWFQVPRAIADRFADAVRRTADPEGG 535 >gi|209543288|ref|YP_002275517.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530965|gb|ACI50902.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 596 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 259/519 (49%), Positives = 343/519 (66%), Gaps = 3/519 (0%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + AL RGY T VQ+A+L+ +D+LVSAQTGSGKTVAFGLA+A TLL Sbjct: 3 FPETHPALRRALDARGYEEPTPVQKAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +RF PA APLA+ IAPTRELA+QV REL WLYA G + CIGG+ RE R L+ Sbjct: 63 GGAERFGPAGAPLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGMDARREARALEI 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH L +S L+ VVLDEADEMLDLGFRD+++ +LD+ P RR L Sbjct: 123 GAHIVVGTPGRLCDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSATI+ I TLA+ YQ+DA+R++ S RQH+DI YRAV+ + A+VNILR+ Sbjct: 183 LFSATIAKDIATLARRYQRDALRIDTLSGARQHADITYRAVMADPREIIPAVVNILRFTD 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + A+VFC+TR V L E F VALSGEL Q ER+ A++ +R G+ARVC+ATDV Sbjct: 243 SPTAMVFCATRELVRHMQGALLERGFSSVALSGELGQSERTRAIESLRTGQARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P L LV+HA L ++ LLHRSGRTGRAGRKG+ ++P +M+RRAERL A Sbjct: 303 AARGIDIPALSLVVHASLPTDSATLLHRSGRTGRAGRKGVCALIVPVSMRRRAERLLTMA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 VS W P+ EAIR +DA+R+L DP+ + ++ +V L E++AA L++ Sbjct: 363 KVSAEWTAVPTAEAIRAQDAERLLTDPILTEGAAPGDEDLVARLAENRSAEQLAAALLQM 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---GSSWFSLSVGSKQKAE 480 +RA L PE+I P+ + + R D K G D+ +WFS+SVG + KA+ Sbjct: 423 YRARLPDPEDIRPLRVEAPRAPREGDYARRKEQGPREDHAPRGGPGAWFSMSVGRQDKAD 482 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 +WL+P++CR G+ + IGAIR+ D T E++ + + Sbjct: 483 PKWLVPLICRLGGVRKNDIGAIRIADDHTLFEIATESAE 521 >gi|294012703|ref|YP_003546163.1| putative helicase [Sphingobium japonicum UT26S] gi|292676033|dbj|BAI97551.1| putative helicase [Sphingobium japonicum UT26S] Length = 576 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 256/523 (48%), Positives = 346/523 (66%), Gaps = 12/523 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE++P ++ AL+ +GY +LT VQ + P+ +D++VSAQTGSGKTVAFGLA+A LL Sbjct: 3 FEHLPPLLSGALTRKGYESLTPVQAQVTQPEAEGRDLIVSAQTGSGKTVAFGLAMAKELL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + R PLALAIAPTRELA+QV RELEWLY + +A C+GG+ +ERR L + Sbjct: 63 GDASRLPAPGLPLALAIAPTRELALQVARELEWLYGEARARIATCVGGMDAAKERRALAH 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRL DH+ L++S LK VVLDEADEMLD+GFR+D+E ILD +P+ RR L Sbjct: 123 GAHIVVGTPGRLRDHLERGALDLSGLKTVVLDEADEMLDMGFREDLEEILDGAPEGRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LAK YQKDA+R++ S+ R H DI Y+AV VA +D +NA+VN+LRYH Sbjct: 183 LFSATMPKPIVALAKRYQKDALRISTVSDERGHGDISYQAVTVAPADIENAVVNLLRYHE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AI+FC+TR +V L E F VALSGE SQ ER++ALQ +RD RARVC+ATDV Sbjct: 243 AETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP+L LV+H EL + E + HRSGRTGRAG+KG +V ++P +RR E + R A Sbjct: 303 AARGIDLPNLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLRGA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + V W PS EAI+E+D R+ + + + + + LL ++IAA ++ Sbjct: 363 KIPVEWGTPPSKEAIQEQDNARLREKLMERADLDEQDWALGAELLEAKSAKEIAAMLVKS 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 RA L APEE+ D S A + G R F+ + WF + +G +Q A+ RW Sbjct: 423 ARAALPAPEELL------------DASEAPQRRDGPRPGFEDTVWFRMDIGRRQNADPRW 470 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 ++P++CR ++RQ IGAIR+ + T E+ + V +VK Sbjct: 471 ILPLICRRGHVSRQDIGAIRIAANETLFEIPSAIVSRFMGSVK 513 >gi|94497195|ref|ZP_01303767.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58] gi|94423300|gb|EAT08329.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58] Length = 580 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 252/510 (49%), Positives = 340/510 (66%), Gaps = 12/510 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE +P ++ +AL +GY LT VQ + + +D+LVSAQTGSGKTVAFGLA+A LL Sbjct: 3 FETLPALLSQALVAKGYEALTPVQSEVTQEEAHGRDLLVSAQTGSGKTVAFGLAMAGELL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + +R A PLAL IAPTRELA+QV RELEWLY +A C+GG+ +ERR+L + Sbjct: 63 GDAERLPVAGLPLALVIAPTRELALQVSRELEWLYGAARARIATCVGGMDAAKERRNLSH 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRL DH+ L++S ++ VLDEADEMLD+GFR+D+E ILDS+P++RR L Sbjct: 123 GAHIVVGTPGRLRDHLERGALDLSAMRTAVLDEADEMLDMGFREDLEAILDSAPQERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I T+AK YQKDA+R++ SE R H DI Y+A+ VA SD +NA+VN+LR+H Sbjct: 183 LFSATMPKPIVTMAKRYQKDALRISTMSEERGHGDISYQALTVAPSDIENAVVNLLRFHE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AI+FC+TR +V L E F VVALSGE SQ ER++ALQ +RD RARVC+ATDV Sbjct: 243 AETAILFCATRDNVRHLHASLTERGFAVVALSGEHSQNERNHALQALRDKRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LV+H EL + E + HRSGRTGRAG+KG +V ++P +RR E + R A Sbjct: 303 AARGIDLPSLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLRGA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + V W PS EAI E+D R+ + + + + +LA+ ++IAA ++ Sbjct: 363 KIPVEWGTPPSKEAILEQDNARLRASLMERAELDEADWALGAEILAEKSAKEIAAMLVKS 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 RA L APEE+ D S A G R F+ + WF + +G +Q A+ RW Sbjct: 423 ARAALPAPEELL------------DRSEAPTRNDGPRPGFEDTQWFRMDIGRRQNADPRW 470 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++P++CR ++RQ IGAIR+ + T E+ Sbjct: 471 ILPLICRRGHVSRQDIGAIRITTNETMFEI 500 >gi|85708865|ref|ZP_01039931.1| cold-shock dead-box protein A [Erythrobacter sp. NAP1] gi|85690399|gb|EAQ30402.1| cold-shock dead-box protein A [Erythrobacter sp. NAP1] Length = 598 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 269/572 (47%), Positives = 365/572 (63%), Gaps = 14/572 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE +P IGEAL+ERGY T VQ A + PD +D++VSAQTGSGKTVAFG+ALA +L Sbjct: 3 FEILPPAIGEALAERGYSEPTPVQAAAMAPDSAGRDLIVSAQTGSGKTVAFGIALAQDIL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + PL LAIAPTRELA+QV REL WLYAK G+ +A C+GG+ +ERR L++ Sbjct: 63 DQISGTPLQERPLVLAIAPTRELALQVSRELGWLYAKAGLRIATCVGGMDASKERRALRS 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGRL DH+ L++S L VVLDEADEMLD+GFR+D+E ILD++P RR L Sbjct: 123 GPAIVVGTPGRLRDHLERGALDLSGLIGVVLDEADEMLDMGFREDLEEILDATPDTRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI LA+ YQ DA+R+++ ++R H DI+Y+A+ VA S+ +NA+VN+LR+H Sbjct: 183 LFSATMPQAIVRLAQKYQSDALRLSLGGKDRGHGDIEYQAITVAPSEIENAVVNLLRFHE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A++AI FC+TR SV R L F VV+LSGE SQ ER+ ALQ MRD RARVC+ATDV Sbjct: 243 AESAICFCATRESVRRLHSALQNRGFGVVSLSGENSQSERNQALQAMRDRRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LVIH E + E L HRSGRTGRAG+KG + ++P N +RR + + A Sbjct: 303 AARGIDLPTLSLVIHVETPRDAETLQHRSGRTGRAGKKGTAAIIVPYNRRRRVDAMLNGA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + W APS EAIR++D R+++ + D++ + LLA+ PE IAA ++ Sbjct: 363 KIKAQWLDAPSPEAIRKKDHARLMEKLTQPAEYEADDRAIASELLARMSPEDIAAALVKA 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 HRA L PEE+ + R++ + + + R F+ + WF + VG + AE RW Sbjct: 423 HRAELPEPEEML-ANTPEAREKAKKERQ--------RPGFEDTVWFKIGVGRRHNAEPRW 473 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYLGGE 539 L+P++CR I R IGAIRV + ++ + ++A D L +T DK Q L E Sbjct: 474 LLPLICRRGHITRNEIGAIRVGQNESWFQIPRPIAAKFADTLEQTFS-DKDDQDAILIEE 532 Query: 540 KPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571 + ++ + +S K F + K AS Sbjct: 533 SAEGPRIEARNNRKNHSGKPFVKPFGKGKNAS 564 >gi|296114606|ref|ZP_06833259.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295978962|gb|EFG85687.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 593 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 261/523 (49%), Positives = 341/523 (65%), Gaps = 22/523 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + AL E+GY N T VQ A+L+ +D+LVSAQTGSGKTVAFGLA+A TLL Sbjct: 3 FPETHPALQRALDEQGYENPTPVQTAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 ++R PA APLA+ IAPTRELA+QV REL WLYA G + CIGG+ RE R LQ Sbjct: 63 GGDERLGPAGAPLAVIIAPTRELAMQVTRELTWLYAAAGARIVSCIGGMDARREARALQI 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+ L ++ L+ VVLDEADEMLDLGFRD++E +LD+ PK RR L Sbjct: 123 GAHIVVGTPGRLCDHLSRGRLVMTDLRVVVLDEADEMLDLGFRDELEQLLDAMPKTRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSATI+ I +LAK YQ DA+R++ S +QH+DI+YRA+L + ++VN+LR Sbjct: 183 LFSATIAREIASLAKRYQHDALRIDTLSGTKQHADIEYRALLTDAREIIPSVVNVLRETD 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VFC+TR V L E F VALSGEL Q ER+ A+ +R G+A VC+ATDV Sbjct: 243 SPTTMVFCATRELVRHLQSALVERGFSSVALSGELGQAERTRAIDSLRKGQASVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P L LV+HA L ++P LLHRSGRTGRAGRKG+ V ++P + +RRAERL A Sbjct: 303 AARGIDIPALALVVHASLPTDPATLLHRSGRTGRAGRKGVCVLMVPVSQRRRAERLMMGA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 +S W PS E IR D QR+L DP ++ + +++ L H PE++AA LR Sbjct: 363 KISATWSAVPSAEEIRVLDTQRLLADPALSAAVPEADHELIARLTEGHSPEQLAAALLRS 422 Query: 424 HRAGLCAPE---EITPVSLVSGRDRFRDDSRAFKVGGG-----SRDNF--KGSSWFSLSV 473 +RA L PE +ITP D+RA + G RD+ + SWFS+SV Sbjct: 423 YRAHLPQPENVRQITP------------DTRAPRAEGPRAPREGRDHAPREPGSWFSMSV 470 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 G + KA+ +WL+P++CR G+ + IGAIR+ T E++ D Sbjct: 471 GRQDKADPKWLVPLICRLGGVRKSDIGAIRIADTQTLFEITPD 513 >gi|295689355|ref|YP_003593048.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter segnis ATCC 21756] gi|295431258|gb|ADG10430.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC 21756] Length = 732 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 265/505 (52%), Positives = 347/505 (68%), Gaps = 2/505 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ +GY T VQ A+L D ++D+LVSAQTGSGKTVAFGLA A TLL E + F A+ Sbjct: 13 ALAAQGYAEPTPVQAAVLAADAADRDLLVSAQTGSGKTVAFGLAAAPTLLGEAETFGQAA 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 PLAL IAPTRELA+QV REL WLYA+ VV C+GG+ RE+R L GAHIVVGTPG Sbjct: 73 EPLALVIAPTRELAMQVNRELTWLYAEAKAVVVNCVGGMDARREQRALNYGAHIVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI L++S L+ VLDEADEMLD+GFR+D+EFILD++P +RR L+FSAT++ I Sbjct: 133 RLRDHIERGHLDLSKLQVAVLDEADEMLDMGFREDLEFILDAAPPERRTLLFSATLARDI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK YQ DAVR++ N H DI+YRAV VA ++ ++A+VN+LR+ A A+VF +T Sbjct: 193 VELAKRYQNDAVRIDTIGRNEPHRDIEYRAVRVAPNEVEHAVVNLLRFFEAPGALVFANT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R SV L E F VV LSGELSQ+ER++ALQ +RDG ARVC+ATDVAARG+DLPDL Sbjct: 253 RESVRGLHNKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARGLDLPDL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 LVIHAEL N LLHRSGRTGRAG+KG+S V+P +R+AE+L A V W AP Sbjct: 313 GLVIHAELPINKATLLHRSGRTGRAGKKGVSALVVPYTRRRKAEQLLYAAGVEADWGGAP 372 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433 S ++IRE+D +R+L+DP+F ++ ++ + + +LAK P +IAA +R RA L +PE+ Sbjct: 373 SADSIREKDQERLLEDPIFAEAATEEDIALAEAMLAKRTPVEIAAALIRTRRAKLPSPED 432 Query: 434 I--TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRS 491 I P R R + R + +GS WF +SVG + A+ +WL+PM+CR Sbjct: 433 IYDDPRHGADPGPRLRTGEPGERPEREPRVSMEGSEWFRISVGRRGNADPKWLIPMICRL 492 Query: 492 SGINRQSIGAIRVQPDLTFVEVSAD 516 + ++ IGAIR+ T E+SA+ Sbjct: 493 GHVTKKDIGAIRIFDYDTKFEISAE 517 >gi|326389016|ref|ZP_08210598.1| DEAD/DEAH box helicase-like protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206616|gb|EGD57451.1| DEAD/DEAH box helicase-like protein [Novosphingobium nitrogenifigens DSM 19370] Length = 601 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 249/512 (48%), Positives = 344/512 (67%), Gaps = 13/512 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F ++P +I +AL+E+GY T VQ A+L + ++D+LVSAQTGSGKTVAFG+A+A+ LL Sbjct: 17 FSSLPNLISQALAEQGYAEPTPVQAAVLGAEAHDRDLLVSAQTGSGKTVAFGVAMAARLL 76 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +E++ F+ AP AL IAPTRELA+QV REL WL+ K G+ + C+GG+ RERR L Sbjct: 77 SEDNGFN--RAPGALVIAPTRELALQVSRELTWLFGKAGIRITTCVGGMDAARERRTLAQ 134 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G H+VVGTPGRL DH+ L++S L VVLDEADEMLD+GFR+D+E IL+++P+ RR L Sbjct: 135 GTHVVVGTPGRLRDHLERGALDLSALHHVVLDEADEMLDMGFREDLEEILEATPEGRRTL 194 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LA+ YQ+DA+R++ S+N H DI Y+AV V+ +D +NA++N+LR+H Sbjct: 195 LFSATMPKPIVALARRYQRDALRISTVSDNVGHGDITYQAVAVSPADIENAVINLLRFHE 254 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AI+FC+TR +V L E F VALSGE SQ ER+NALQ +RDGRAR+C+ATDV Sbjct: 255 AETAILFCATRDNVRHLHSSLIERGFAAVALSGEHSQNERNNALQALRDGRARICVATDV 314 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P L LVIH E+ + E L HRSGRTGRAGRKG++V ++P +RR E + R A Sbjct: 315 AARGIDIPSLSLVIHVEVPRDAEVLQHRSGRTGRAGRKGVAVMIVPYPRRRRVEGMLRIA 374 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 V+ W P PS E+IRERD +R+L D L ++ + + +LA P +A ++ Sbjct: 375 RVTAEWVPVPSPESIRERDRERLLADLLQPIESSDADRDLAERILAAMSPTDVALALVQA 434 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 + G+ PEE+ S V G R+ F WF + +G +Q A+ RW Sbjct: 435 RKRGIPDPEELIEQSQADA-----------PVRGARREGFDDVVWFRMDIGRRQNADPRW 483 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 L+P+LCR I R IGAIR+ + T+ +V + Sbjct: 484 LLPLLCRRGHITRNEIGAIRIAANETYFQVPS 515 >gi|23014876|ref|ZP_00054672.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 592 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 258/510 (50%), Positives = 344/510 (67%), Gaps = 3/510 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+ER Y + T VQEA+L P +D+LVSAQTGSGKTVA+GLA+A TLL + PA Sbjct: 12 KALTERDYTDPTDVQEAVLEPGAMGRDLLVSAQTGSGKTVAYGLAMADTLLGDAFTLEPA 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + PLAL +APTRELA+QV REL WLY G V C+GG+ E+R L GAHIVVGTP Sbjct: 72 AEPLALIVAPTRELALQVHRELSWLYEHAGARVVSCVGGMDPRAEQRSLGQGAHIVVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ GL I+ LKAVVLDEADEMLDLGFR+D+EFIL+++P++RR L+FSAT+ Sbjct: 132 GRLRDHLERGGLRINRLKAVVLDEADEMLDLGFREDLEFILEATPQERRTLLFSATLPHG 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +AK YQ++A R+ +++ + H+DI+YRAV VA ++ ++A+VN+LRY + A+VFC+ Sbjct: 192 IVAMAKRYQRNAWRIAVSAGTQGHADIEYRAVRVAPNEIEHAVVNLLRYFESPTAMVFCN 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR SV +L E F VALSGEL Q ER+NALQ +RDGRARVC+ATDVAARGIDLP+ Sbjct: 252 TRDSVRHLQAILLERGFAAVALSGELGQNERNNALQALRDGRARVCVATDVAARGIDLPN 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L LVIHAEL N + L HRSGRTGRAG+KG+SV ++ + +R+A+ L + A V +W A Sbjct: 312 LGLVIHAELPQNAQTLQHRSGRTGRAGKKGVSVLLVLLSRRRKADMLLQTAGVQAIWSGA 371 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432 PS + IR+ D +R+L PL + D+ M LLA+ E IAA +R++R+ L A E Sbjct: 372 PSADDIRKLDQERLLTSPLLAEENTEDDLAMARALLAERPAEDIAAALVRMYRSHLPAAE 431 Query: 433 EI---TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489 E+ P S R+ G GS WF +++G ++ A+ RWL+PM+C Sbjct: 432 EVFDPGPGSPTREPREHREREPRPPREGKGPGLPGGSVWFRMNIGRQKNADPRWLIPMIC 491 Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 R + + IGAIR+ T E+ A D Sbjct: 492 RQGKVTKAEIGAIRIFERETRFEIDAAHAD 521 >gi|240141300|ref|YP_002965780.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein [Methylobacterium extorquens AM1] gi|240011277|gb|ACS42503.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein [Methylobacterium extorquens AM1] Length = 568 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 266/515 (51%), Positives = 353/515 (68%), Gaps = 9/515 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F ++P + AL+ER Y T VQ+A+L+ + E+D+LVSAQTGSGKTVAFGLA+A TLL Sbjct: 3 FPSLPSPLARALTERNYAEPTPVQQAVLD-AVPERDLLVSAQTGSGKTVAFGLAIAGTLL 61 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E++ P APLAL IAPTRELA+QV REL WLYA+TG + C+GG+ RE R L+ Sbjct: 62 GEDETLPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRL DH+ L L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI LA++YQ+DA+R+ +A E R H+DI YRAV V + ++A+VNILRY Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A AIVFC+TR V L E F VALSGEL Q ER+ ALQ +RDGRARVC+ATDV Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L+LVIHA+L + E + HRSGRTGRAGRKG SV ++P +RRAE++F A Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVLLAKHDPEKIAAG 419 VS W P+ + IR D +R++ DPL + + E++ + L+ + PE++AA Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR-DNFKGSSWFSLSVGSKQK 478 F R++R+ + PEE++ + + R R DSR+ G SR + + ++WF L++G + + Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSR---RPDSRSSVPVGASRVGDDEPAAWFRLNLGRRDR 478 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 AE R L+PML R I R IG+IR+ + T EV Sbjct: 479 AEPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEV 513 >gi|163853846|ref|YP_001641889.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium extorquens PA1] gi|163665451|gb|ABY32818.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens PA1] Length = 568 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 266/515 (51%), Positives = 353/515 (68%), Gaps = 9/515 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F ++P + AL+ER Y T VQ+A+L+ + E+D+LVSAQTGSGKTVAFGLA+A TLL Sbjct: 3 FPSLPSPLARALTERNYAEPTPVQQAVLD-AVPERDLLVSAQTGSGKTVAFGLAIAGTLL 61 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E++ P APLAL IAPTRELA+QV REL WLYA+TG + C+GG+ RE R L+ Sbjct: 62 GEDETLPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRL DH+ L L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI LA++YQ+DA+R+ +A E R H+DI YRAV V + ++A+VNILRY Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A AIVFC+TR V L E F VALSGEL Q ER+ ALQ +RDGRARVC+ATDV Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L+LVIHA+L + E + HRSGRTGRAGRKG SV ++P +RRAE++F A Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVLLAKHDPEKIAAG 419 VS W P+ + IR D +R++ DPL + + E++ + L+ + PE++AA Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR-DNFKGSSWFSLSVGSKQK 478 F R++R+ + PEE++ + + R R DSR+ G SR + + ++WF L++G + + Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSR---RPDSRSGVPVGASRVGDDEPAAWFRLNLGRRDR 478 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 AE R L+PML R I R IG+IR+ + T EV Sbjct: 479 AEPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEV 513 >gi|83592722|ref|YP_426474.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] gi|83575636|gb|ABC22187.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] Length = 677 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 263/519 (50%), Positives = 346/519 (66%), Gaps = 14/519 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +AL ER Y T+VQ A+L P + +D+LVSAQTGSGKTVA+GLA+ASTLL + Sbjct: 10 LTQALIERNYTEPTAVQTAVLEPGAQGRDLLVSAQTGSGKTVAYGLAIASTLLGDEAVLE 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PA+ PLAL +APTRELA+QV REL WLY G V C+GG+ E R L G HIVVG Sbjct: 70 PATEPLALIVAPTRELALQVHRELAWLYGHAGAKVVSCVGGMDPRAETRRLGEGCHIVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ L + LKAVVLDEADEMLDLGFR+D+EF+L+++P++RR L+FSAT+ Sbjct: 130 TPGRLRDHLERGNLAVGRLKAVVLDEADEMLDLGFREDLEFLLEATPQERRTLLFSATLP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI TLAK YQ++A R+ +A+ + H+DI+YRA+ VA ++ ++A+VN+LRY + +VF Sbjct: 190 KAIVTLAKRYQREAWRIAVAAGKQGHADIEYRAISVAPNEVEHAVVNLLRYVESPATLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR SV +L E F VALSGEL Q ER+ ALQ +RDGRARVC+ATDVAARGIDL Sbjct: 250 CNTRESVRHLQAILLERGFAAVALSGELGQGERNQALQALRDGRARVCVATDVAARGIDL 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P++ LVIHAEL N + L HRSGRTGRAGRKG+SV ++ + +RRAE+L A V W Sbjct: 310 PNIGLVIHAELPQNAQTLQHRSGRTGRAGRKGISVLLVLFSRKRRAEQLLETAGVRAQWG 369 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430 APS + IR D +R+LQ PL + + D+ M LLA PE+IAA +R++RA L A Sbjct: 370 GAPSADDIRALDQERLLQSPLVSEDLTEDDLAMAKALLAVRSPEEIAAALVRMYRAQLPA 429 Query: 431 PEEITPVSLV-----------SGRDRFRDDSRA--FKVGGGSRDNFKGSS-WFSLSVGSK 476 E++ + RDR RD R + G G S F L+VG + Sbjct: 430 AEDVFAAGTAEPSPEPRARRPASRDRDRDGEREPMTEPRPGRNSGLSGPSVCFRLNVGRQ 489 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + A+ RWL+PM+CR I +Q IGAI + T +E++A Sbjct: 490 KNADPRWLVPMICRLGKITKQEIGAISIFERDTKIEIAA 528 >gi|218532791|ref|YP_002423607.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4] gi|218525094|gb|ACK85679.1| DEAD/DEAH box helicase domain protein [Methylobacterium chloromethanicum CM4] Length = 568 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 266/515 (51%), Positives = 354/515 (68%), Gaps = 9/515 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F ++P + AL+ER Y T VQ+A+L+ + E+D+LVSAQTGSGKTVAFGLA+A TLL Sbjct: 3 FPSLPSPLARALTERNYAEPTPVQQAVLD-AVPERDLLVSAQTGSGKTVAFGLAIAGTLL 61 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +E++ P APLAL IAPTRELA+QV REL WLYA+TG + C+GG+ RE R L+ Sbjct: 62 SEDEALPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRL DH+ L L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI LA++YQ+DA+R+ +A E R H+DI YRAV V + ++A+VNILRY Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A AIVFC+TR V L E F VALSGEL Q ER+ ALQ +RDGRARVC+ATDV Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L+LVIHA+L + E + HRSGRTGRAGRKG SV ++P +RRAE++F A Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVLLAKHDPEKIAAG 419 VS W P+ + IR D +R++ DPL + + E++ + L+ + PE++AA Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR-DNFKGSSWFSLSVGSKQK 478 F R++R+ + PEE++ + + R R DSR+ G SR + + ++WF L++G + + Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSR---RPDSRSGVPVGASRVGDDEPAAWFRLNLGRRDR 478 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 AE R L+PML R I R IG+IR+ + T EV Sbjct: 479 AEPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEV 513 >gi|254563809|ref|YP_003070904.1| ATP-independent RNA helicase, DEAD/DEAH-box family protein [Methylobacterium extorquens DM4] gi|254271087|emb|CAX27094.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein [Methylobacterium extorquens DM4] Length = 568 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 266/515 (51%), Positives = 353/515 (68%), Gaps = 9/515 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F ++P + AL+ER Y T VQ+A+L+ + E+D+LVSAQTGSGKTVAFGLA+A TLL Sbjct: 3 FPSLPSPLARALTERNYAEPTPVQQAVLD-AVPERDLLVSAQTGSGKTVAFGLAIAGTLL 61 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E++ P APLAL IAPTRELA+QV REL WLYA+TG + C+GG+ RE R L+ Sbjct: 62 GEDEALPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRL DH+ L L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI LA++YQ+DA+R+ +A E R H+DI YRAV V + ++A+VNILRY Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A AIVFC+TR V L E F VALSGEL Q ER+ ALQ +RDGRARVC+ATDV Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L+LVIHA+L + E + HRSGRTGRAGRKG SV ++P +RRAE++F A Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVLLAKHDPEKIAAG 419 VS W P+ + IR D +R++ DPL + + E++ + L+ + PE++AA Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR-DNFKGSSWFSLSVGSKQK 478 F R++R+ + PEE++ + + R R DSR+ G SR + + ++WF L++G + + Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSR---RPDSRSGVPVGASRVGDDEPAAWFRLNLGRRDR 478 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 AE R L+PML R I R IG+IR+ + T EV Sbjct: 479 AEPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEV 513 >gi|83313160|ref|YP_423424.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1] gi|82948001|dbj|BAE52865.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum AMB-1] Length = 622 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 258/510 (50%), Positives = 345/510 (67%), Gaps = 3/510 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+ER Y + T+VQEA+L P +D+LVSAQTGSGKTVA+GLA+A TLL + PA Sbjct: 48 KALTERDYTDPTAVQEAVLEPGAAGRDLLVSAQTGSGKTVAYGLAIADTLLGDAFVLEPA 107 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + PLAL +APTRELA+QV REL WLY G V C+GG+ E+R L GAHIVVGTP Sbjct: 108 AEPLALIVAPTRELALQVHRELTWLYEHAGARVVSCVGGMDPRAEQRMLGQGAHIVVGTP 167 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ GL I+ LKAVVLDEADEMLDLGFR+D+EFIL+++P++RR L+FSAT+ Sbjct: 168 GRLRDHLERGGLRINRLKAVVLDEADEMLDLGFREDLEFILEATPQERRTLLFSATLPHG 227 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +AK YQ++A R+ +++ + H+DI+YRAV VA ++ ++A+VN+LRY + A+VFC+ Sbjct: 228 IVAMAKRYQRNAWRIAVSAGTQGHADIEYRAVRVAPNEIEHAVVNLLRYFESPTAMVFCN 287 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR SV +L E F VALSGEL Q ER+NALQ +RDGRARVC+ATDVAARGIDLP+ Sbjct: 288 TRDSVRHLQAILLERGFAAVALSGELGQNERNNALQALRDGRARVCVATDVAARGIDLPN 347 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L LVIHAEL N + L HRSGRTGRAG+KG+SV ++ + +R+A+ L + A V +W A Sbjct: 348 LGLVIHAELPQNAQTLQHRSGRTGRAGKKGVSVLLVLLSRRRKADMLLQTAGVQAIWSGA 407 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432 PS E IR+ D +R+L PL + D+ M LLA+ E IAA +R++R+ L A E Sbjct: 408 PSAEDIRKLDQERLLTSPLLSEENTEDDLAMAKALLAERPAEDIAAALVRMYRSHLPAAE 467 Query: 433 EI---TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489 E+ P + R+ G GS WF +++G ++ A+ RWL+PM+C Sbjct: 468 EVFDPGPGNPSREPREHREREPRPPREGKGPGLPGGSVWFRMNIGRQKNADPRWLIPMIC 527 Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 R + + IGAIR+ T E+ A D Sbjct: 528 RQGKVTKAEIGAIRIFERETRFEIDAGHAD 557 >gi|158424747|ref|YP_001526039.1| putative DEAD-box protein [Azorhizobium caulinodans ORS 571] gi|158331636|dbj|BAF89121.1| putative DEAD-box protein [Azorhizobium caulinodans ORS 571] Length = 678 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 251/495 (50%), Positives = 340/495 (68%), Gaps = 9/495 (1%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 Y + T VQ A+ P+ +D+LVSAQTGSGKTVA+GLA+ TLL ++R APLAL Sbjct: 109 YTDPTPVQSAVTAPEATGRDMLVSAQTGSGKTVAYGLAVGQTLLGSDERLPAPGAPLALV 168 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 IAPTRELA+QV +EL WLYA+ G + C+GG+ RE+R LQ+GAH+VVGTPGRL DH+ Sbjct: 169 IAPTRELALQVHKELAWLYAEAGGRIVACVGGMDPLREKRQLQDGAHVVVGTPGRLRDHL 228 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 L++S L AVVLDEADEMLDLGFR+D+EFILDS+P KR+ L+FSAT+ I LA+ Sbjct: 229 ERGRLDMSQLAAVVLDEADEMLDLGFREDLEFILDSTPGKRQTLLFSATMPRDIAALARQ 288 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259 YQ DA+R+ +A + H+DI+YRAV V+ + ++A+VN+LR+ A AIVFC+TR +V Sbjct: 289 YQHDALRIEVAGQKVGHADIEYRAVRVSPREIEHAVVNLLRFFEAPGAIVFCNTREAVRH 348 Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 T L E F VALSGEL Q ER+ ALQ +RDGRARVC+ATDVAARGIDLP L LVIHA Sbjct: 349 LTATLQERGFSAVALSGELGQNERNLALQALRDGRARVCVATDVAARGIDLPGLGLVIHA 408 Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 EL + E+L HRSGRTGRAGRKG+SV ++P +R+A++L EA V W P+ E +R Sbjct: 409 ELPHDAESLQHRSGRTGRAGRKGVSVLLVPPGRRRKADQLLAEARVVPAWSGPPTAEEVR 468 Query: 380 ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSL 439 D +R+L DP + ++ + + LLA++ +++A +R++RA L APEE+T Sbjct: 469 ALDQERMLSDPQLSELPAAEDANLAEALLAQYSAQELATALVRLYRARLPAPEEVTD--- 525 Query: 440 VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSI 499 G R + D RA G +WF L+VG ++ A+ +WL+P++CR G+ + I Sbjct: 526 -PGEGRQKRDGRAGLG-----ATGTGGAWFRLAVGRRKNADPKWLLPLICRRGGVTKGDI 579 Query: 500 GAIRVQPDLTFVEVS 514 GAIR+ + T E++ Sbjct: 580 GAIRIFENETLFEIA 594 >gi|197106923|ref|YP_002132300.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum HLK1] gi|196480343|gb|ACG79871.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum HLK1] Length = 587 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 256/524 (48%), Positives = 343/524 (65%), Gaps = 11/524 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + +G AL+ RGY T VQ A+L + +D+LVSAQTGSGKTVAFGLA A LL Sbjct: 3 FPDTHPALGRALAARGYAEPTPVQAAVLEAEP-GRDLLVSAQTGSGKTVAFGLAAAPALL 61 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +RF +APL L IAPTRELA+QV RELEWLYA+T V C+GG+ RE+R L Sbjct: 62 DGGERFEAPAAPLGLVIAPTRELALQVARELEWLYAETAARVVTCVGGMDARREQRALAA 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G H+VVGTPGRL DH+ L++S L+ VVLDEADEMLDLGFR+D+E ILD++PK+RR Sbjct: 122 GCHLVVGTPGRLRDHLERGNLDLSALRVVVLDEADEMLDLGFREDLEEILDATPKERRTF 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT++ I LA+ YQ+DAVR++ + H DI+YRAV VA ++ +NA+VN+LRY Sbjct: 182 LFSATLAKDIVALARRYQQDAVRIDTVRRDEPHGDIEYRAVRVAPNELENAVVNVLRYFE 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +A++FC+TR +V L E F VVALSGE+ Q+ERS+ALQ +RDG AR C+ATDV Sbjct: 242 SPSALIFCATREAVRHLYGALRERGFPVVALSGEMGQKERSDALQALRDGHARACVATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+DLPDL LVIHAEL N LLHRSGRTGRAGRKG+SV ++P +R+AE L A Sbjct: 302 AARGLDLPDLGLVIHAELPVNKAALLHRSGRTGRAGRKGVSVLLVPYTRRRKAEMLLNAA 361 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 V W APS + IRERD R+L+DP+ ++ ++ + +L PE +AA +R+ Sbjct: 362 GVDAQWSGAPSADEIRERDQVRMLEDPILTEAPSDEDLALARKVLEGRAPEAVAAALVRL 421 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN--FKGSSWFSLSVGSKQKAEA 481 +RA L PEE+ ++ +D + N +WF L VG + A+ Sbjct: 422 YRARLPEPEEMF--------EQVQDRPSGPRERPPREPNVVMGDGAWFRLPVGRSKNADP 473 Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 +WL+P++CR + ++ IG IR+ T E++AD R V Sbjct: 474 KWLVPLICRLGHVTKKDIGQIRIFDHETKFEIAADAESRFREAV 517 >gi|144899404|emb|CAM76268.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Magnetospirillum gryphiswaldense MSR-1] Length = 583 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 257/511 (50%), Positives = 342/511 (66%), Gaps = 6/511 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +ALS+R Y +LTSVQ A+L+P R +D+LVSAQTGSGKTVAFGLA+A TLL + F Sbjct: 10 LTQALSQRNYTDLTSVQNAVLDPAARGRDLLVSAQTGSGKTVAFGLAIADTLLGDALAFG 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AS PLAL +APTRELA+QV REL WLY + G V C+GG+ E+R L GAHIVVG Sbjct: 70 QASEPLALIVAPTRELALQVQRELTWLYQQAGGQVVACVGGMDPRAEQRMLGRGAHIVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ L L+AVVLDEADEMLDLGFR+D+EFIL+++P+ RR L+FSAT+ Sbjct: 130 TPGRLRDHLERGALRTGQLRAVVLDEADEMLDLGFREDLEFILEATPQNRRTLLFSATLP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK YQ+D+ R+ +++ H+DI+YRAV VA ++ ++A+VN+LRY + A+VF Sbjct: 190 KLIIALAKRYQRDSFRIAVSAGEHGHADIEYRAVRVAPNEIEHAVVNLLRYFESPGALVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR SV +L E F VALSGEL Q ER+ +LQ +RDGRARVC+ATDVAARGIDL Sbjct: 250 CNTRESVRHLQAILQERGFAAVALSGELGQNERNQSLQALRDGRARVCVATDVAARGIDL 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P++ LVIHAEL N L HRSGRTGRAGRKG+SV ++ + +R+AE + V W Sbjct: 310 PNINLVIHAELPQNGPTLQHRSGRTGRAGRKGVSVLLVQLSRRRKAELQLQSVGVQAAWS 369 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430 APS E IR+ D +R++Q PL ++ +M LLA+ E++AA +R++R+ L A Sbjct: 370 GAPSAEDIRQLDRERLIQSPLLTGETTEEDLEMARTLLAQRPAEEVAAALVRLYRSQLPA 429 Query: 431 PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG------SSWFSLSVGSKQKAEARWL 484 EE+ + RA + R + G S WF L+VG ++ A+ RWL Sbjct: 430 AEELFDPGSGPAPSTGPREPRAPREPREPRGDRPGAMAPGESVWFRLNVGRQKDADPRWL 489 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 +PM+CR I +Q IG+IR+ T E+ A Sbjct: 490 IPMICRHGKITKQEIGSIRIFERETRFEIEA 520 >gi|149185963|ref|ZP_01864278.1| cold-shock dead-box protein A [Erythrobacter sp. SD-21] gi|148830524|gb|EDL48960.1| cold-shock dead-box protein A [Erythrobacter sp. SD-21] Length = 609 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 258/510 (50%), Positives = 347/510 (68%), Gaps = 9/510 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE +P VIGEAL+ RGY +LT VQ A++ + R +D++VSAQTGSGKTVAFGLALA LL Sbjct: 3 FETLPPVIGEALAARGYTDLTPVQSAVIEDEARGRDLVVSAQTGSGKTVAFGLALADALL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 AE + PLAL IAPTRELA+QV REL WLYA G+ +A C+GG+ +ERR L+ Sbjct: 63 AETANLALVDKPLALVIAPTRELALQVSRELGWLYAGAGLRIATCVGGMDASKERRALRA 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGRL DH+ L++S L VVLDEADEMLD+GFR+D+E ILD++P RR L Sbjct: 123 GPAIVVGTPGRLRDHLERGALDLSGLVGVVLDEADEMLDMGFREDLEEILDATPDGRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LA+ YQ +++R+++ ++R H DI Y+A+ V+ S+ +NA+VN+LRYH Sbjct: 183 LFSATMPRPIERLAERYQTNSLRLSLVGQDRGHGDISYQAITVSPSEIENAVVNLLRYHE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AI+FC+TR +V RF L E F VVALSGE SQ ER+ ALQ +RD RARVC+ATDV Sbjct: 243 AETAILFCATRDNVRRFHATLQERGFGVVALSGEHSQSERNQALQALRDRRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LVIH E+ + E L HRSGRTGRAG+KG + ++P N +RR E + R A Sbjct: 303 AARGIDLPTLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAAIIVPYNRRRRVEGMLRGA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + W AP+ E I ++D R+L+ + ++++ ++ K PE IAA +R Sbjct: 363 KIEAQWMDAPTPEMIHKQDRARLLEMLTAETEFEEHDRELAKEVMDKLSPEDIAASLVRA 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 HRA + PEE+ P + + RD ++A ++ R F+ WF + VG +Q AEARW Sbjct: 423 HRAKMPTPEELIPNTPEA-----RDKAKADRI----RPGFEDVVWFKIGVGRRQNAEARW 473 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++P+LCR I R IGAIR+ T+ +V Sbjct: 474 ILPLLCRRGHITRNEIGAIRIGQFETWFQV 503 >gi|114705391|ref|ZP_01438299.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506] gi|114540176|gb|EAU43296.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506] Length = 587 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 252/508 (49%), Positives = 339/508 (66%), Gaps = 9/508 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +ALS+RGY LT VQ A+L L E+D+LVSAQTGSGKT+A+GLA+A TLL E +RF Sbjct: 10 LADALSQRGYTQLTDVQTAVLEEPLVERDLLVSAQTGSGKTIAYGLAMAGTLLGEAERFG 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PA P+AL +APTRELA+QV EL WLYA TG +A +GG+ ERR L +G HIVVG Sbjct: 70 PADEPVALIVAPTRELAMQVTNELGWLYAGTGAKLATLVGGMDPRAERRRLGDGVHIVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ L I +LK +VLDEADEML+LGFR+D+EF+L ++P +RR L+FSAT+ Sbjct: 130 TPGRLRDHLTRGALQIGNLKTLVLDEADEMLNLGFREDLEFLLQATPAERRTLLFSATLP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + +NYQ++A R+ IA H+DI+YRAV +A ++ ++A+ N+LR+ +AIVF Sbjct: 190 KPIIQMTRNYQRNAHRIEIAKGQSGHADIEYRAVRIAPNEVEHAVTNVLRHAEQPSAIVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR +V + L E F V LSGEL Q ER+ A+Q +RDGRARVC+ATDVAARG+DL Sbjct: 250 CNTRETVRHLSSGLIERGFAAVTLSGELGQAERNQAIQALRDGRARVCVATDVAARGLDL 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P L LVIHA+L S+ E L HRSGRTGRAGRKG+SV ++P + +R+AERL EA ++ W Sbjct: 310 PSLGLVIHADLPSDAETLQHRSGRTGRAGRKGVSVLLVPISRRRKAERLLAEARINAAWG 369 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430 APS + IR+ D R++ DP+ + ++ LL H E +AA F+R RA + + Sbjct: 370 AAPSADEIRQADEARLVADPVLAEPPSEEDAATAARLLESHSAEALAAAFVRQWRARMPS 429 Query: 431 PEEITPVSL----VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 PE++ + GR R + + K G S WF + VG K A+ +WL+P Sbjct: 430 PEDVFDPNFGPDPKGGRSAERGEGKPKKHERGG-----PSVWFHMDVGRKNNADPKWLLP 484 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVS 514 +LCR I R IGAIR+ T E+S Sbjct: 485 LLCRRGKITRDDIGAIRIFDRETKFEIS 512 >gi|221234483|ref|YP_002516919.1| DEAD-box RNA helicase-like protein [Caulobacter crescentus NA1000] gi|220963655|gb|ACL95011.1| DEAD-box RNA helicase-like protein [Caulobacter crescentus NA1000] Length = 741 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 265/507 (52%), Positives = 346/507 (68%), Gaps = 6/507 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ +GY T VQ A+L D ++D+LVSAQTGSGKTVAFGLA A TLL + + F A+ Sbjct: 13 ALAAQGYAEPTPVQAAVLAADAADRDLLVSAQTGSGKTVAFGLAAAPTLLGDAETFGQAA 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 PLAL IAPTRELA+QV REL WLYA+ V C+GG+ RE+R L GAHIVVGTPG Sbjct: 73 EPLALVIAPTRELAMQVNRELGWLYAEAKAAVINCVGGMDARREQRALNYGAHIVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI L++S LK VLDEADEMLD+GFR+D+EFILD++P +RR L+FSAT++ I Sbjct: 133 RLRDHIERGHLDLSKLKVAVLDEADEMLDMGFREDLEFILDAAPAERRTLLFSATLARDI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK YQ DAVR++ N H DI+YRAV VA ++ ++A+VN+LR+ A A+VF +T Sbjct: 193 VELAKRYQNDAVRIDTIGRNEPHRDIEYRAVRVAPNEVEHAVVNLLRFFEAPGALVFANT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R SV L E F VV LSGELSQ+ER++ALQ +RDG ARVC+ATDVAARG+DLPDL Sbjct: 253 RESVRSMHAKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARGLDLPDL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 LVIHAEL N LLHRSGRTGRAG+KG+S V+P +R+AE+L A V W AP Sbjct: 313 GLVIHAELPINKATLLHRSGRTGRAGKKGVSALVVPYTRRRKAEQLLYAAGVEADWGGAP 372 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433 S ++IRE+D +R+L+DP+F ++ ++ + + +LAK P +IAA +R RA L +PE+ Sbjct: 373 SADSIREKDQERLLEDPIFSEASTEEDVALAEAMLAKRTPVEIAAALIRTRRAKLPSPED 432 Query: 434 I--TPVSLVSGRDRFRDDSRAFKVGG----GSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487 I P R R+ + G R + +GS WF +SVG + A+ +WL+PM Sbjct: 433 IYDDPRHGADPGPRSREPREPREFGERPEREPRVSMEGSEWFRISVGRRGNADPKWLIPM 492 Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVS 514 +CR I ++ IGAIR+ T E+S Sbjct: 493 ICRLGHITKKDIGAIRIFDYDTKFEIS 519 >gi|27380673|ref|NP_772202.1| cold-shock dead-box protein A [Bradyrhizobium japonicum USDA 110] gi|27353838|dbj|BAC50827.1| cold-shock dead-box protein A [Bradyrhizobium japonicum USDA 110] Length = 650 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 269/529 (50%), Positives = 353/529 (66%), Gaps = 21/529 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + + AL+ER Y T VQ A+L + +D+LVSAQTGSGKT+A+GLALA LL Sbjct: 3 FPTMSPPLARALAERNYDRPTPVQLAVLTEEAAGRDLLVSAQTGSGKTLAYGLALAKDLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +RF A APLAL +APTRELA+QV REL WLY V C+GG+ RE+R+L Sbjct: 63 DGIERFERAGAPLALIVAPTRELALQVQRELAWLYEHADGRVVSCVGGMDPRREQRELAA 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+R L+IS LKAVVLDEADEML+LGFR+D+EFIL+++P+ RR L Sbjct: 123 GAHIVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLNLGFREDMEFILETTPETRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I LAK YQ+ A R+ +A + H+DI+YRA+ +A +D ++A+VN+LR+ Sbjct: 183 LFSATFPRGIVALAKQYQQQAFRIEVAGDEGGHADIEYRAIRIAPADVEHAVVNVLRFFE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A +A+VFCSTR +V L E F VVALSGEL+Q ER+ ALQ +RDGRARVC+ATDV Sbjct: 243 APSALVFCSTRDAVRHLQAALLERGFSVVALSGELTQNERTLALQSLRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L+LVI A+L ++ E + HRSGRTGRAGRKG SV ++P +RRAE L + Sbjct: 303 AARGIDLPSLDLVIQADLPNDAEVMQHRSGRTGRAGRKGTSVLLVPPARRRRAELLLNLS 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + VW AP + IR+ D +R ++D LF + D+ + LLA+ PE IAA R+ Sbjct: 363 GIDAVWGTAPQADEIRKLDHER-MKDVLFTEETTADDLVLAQALLAERSPEDIAAALARL 421 Query: 424 HRAGLCAPEEITPVSLVSGR---DRFRDDSRAFKVGGGSRDN---------------FKG 465 +RA L +PE+I +GR DR RD+ RA GG R +G Sbjct: 422 YRARLPSPEDIIDPGERAGRPRDDRGRDNVRA--QGGDDRPERARPKSGKSSSKHGMAEG 479 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 S WF ++G ++ AEARWL+PM+CR GI++ IGAI++ T E+S Sbjct: 480 SVWFRANIGRRKNAEARWLLPMICRRGGIDKGDIGAIKIMDTTTEFEIS 528 >gi|182677259|ref|YP_001831405.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633142|gb|ACB93916.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 577 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 264/555 (47%), Positives = 357/555 (64%), Gaps = 16/555 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + AL+ERGY T VQ A+L + +D+LVSAQTGSGKT+A+GLAL S LLA+ Sbjct: 10 LARALTERGYDQPTPVQAAVLEWEDSNRDLLVSAQTGSGKTIAYGLALGSALLADEKPLP 69 Query: 71 PA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A +APL L IAPTRELA+QV REL WLYA GV + C+GG+ RERRDL GAH+VV Sbjct: 70 VAPNAPLGLIIAPTRELALQVHRELSWLYAYAGVRLVTCVGGMDPRRERRDLDQGAHVVV 129 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH+ LN+ +LKAVVLDEADEMLDLGF +D+ +LD++ +RRML+FSAT+ Sbjct: 130 GTPGRLRDHLERGALNLQNLKAVVLDEADEMLDLGFSEDLTTLLDAAAPERRMLLFSATL 189 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LA+ YQ+DA R+++ + H+DIDYR V V + + +VN+LR A A V Sbjct: 190 PRDIVALAQRYQRDAARISVTAPAGGHADIDYRLVRVVPDEIPHVVVNLLRQVEAPGAFV 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+TR S +L+E F V LSGELSQ ER+ ALQ +R+GRAR+C+ATDVAARGID Sbjct: 250 FCNTRESSRHLQALLSERGFSAVLLSGELSQNERNRALQALREGRARICVATDVAARGID 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 LP+L LVIHA+L ++ L HRSGRTGRAGRKG+SV + + +RRAE+L + + +VW Sbjct: 310 LPNLGLVIHADLPNDAATLQHRSGRTGRAGRKGLSVLLASPSRRRRAEQLLKTLGLPIVW 369 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 + PS E IR+ D +R+LQDPL +++ D++ +LL + P+ IAA F R+ R Sbjct: 370 QAPPSAEEIRKLDQERLLQDPLLMEAAGEDDQASAAMLLEAYPPQAIAAAFARLLREHRP 429 Query: 430 APEEITPVSLVSGRDR-FRDDSRAFKVGGGSRDNFKGSS---WFSLSVGSKQKAEARWLM 485 APEE+ RD F DSR G G+R G + WF L +G KQ A+ RWL+ Sbjct: 430 APEEV--------RDPGFGPDSRQ---GAGARRGQLGDAGAIWFKLGIGRKQNADPRWLL 478 Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545 PM+CR I+R +IGAI++ T EV+ + +++ ++ E PD G Sbjct: 479 PMICRRGKISRSAIGAIKIFERETKFEVAIPVAEQFAANIRIPDPEGVRIERAEAPDAHG 538 Query: 546 YKSSGFKSKNSQDGA 560 +++ + G+ Sbjct: 539 MAGHAGETQAHRHGS 553 >gi|329890702|ref|ZP_08269045.1| cold-shock DEAD box protein A [Brevundimonas diminuta ATCC 11568] gi|328846003|gb|EGF95567.1| cold-shock DEAD box protein A [Brevundimonas diminuta ATCC 11568] Length = 668 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 257/517 (49%), Positives = 341/517 (65%), Gaps = 7/517 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F I + AL +GY T VQ A+L E D+LVSAQTGSGKTVAFGLA A TLL Sbjct: 3 FPAIHPALDRALLNKGYAEPTPVQAAVLE-GHGEADLLVSAQTGSGKTVAFGLAAAPTLL 61 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E++RF PL LAIAPTRELA+QV ELEWLYA+ G + C+GG+ +E R L Sbjct: 62 GEDERFGQPDTPLMLAIAPTRELALQVAAELEWLYAEAGAKIVTCVGGMDARKEARALNY 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAH+VVGTPGRL DHI L++S + VVLDEADEMLD+GFR+D+E+ILD +P++RR L Sbjct: 122 GAHVVVGTPGRLKDHIDRGALDLSAARVVVLDEADEMLDMGFREDLEYILDQAPEERRTL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSATI+ I +AK YQKDAVR++ ++ H+DI+YRA+ +A ++ + A+VN+LRY Sbjct: 182 LFSATIARDIAIMAKRYQKDAVRIDTVDRSQPHNDIEYRALRIAPNEIERAVVNVLRYFE 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A +VFCSTR SV L E F VALSGE+ Q+ER+ ALQ +RD RARVC+ATDV Sbjct: 242 APGVLVFCSTRDSVRHLQASLVERGFASVALSGEMGQRERNEALQALRDRRARVCVATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+DLPDL LVIHAEL N +LHRSGRTGRAG+KG+SV ++P + +R+AE L A Sbjct: 302 AARGLDLPDLGLVIHAELPINKATMLHRSGRTGRAGKKGISVLLVPHSRRRKAEMLLGSA 361 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 V VW AP+ + IR +D QR+L P+F + ++ +V+ L+ + P+ +A L + Sbjct: 362 GVEAVWSGAPTADEIRAQDEQRLLAAPVFAEEGADEDAGLVEKLVKERTPDDLARALLVL 421 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRD------DSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 R L APE++T R +D D+ A G R SWF L +G + Sbjct: 422 LRKNLPAPEDLTDPGEGPQRKPRKDRDAAGGDAYAPAPWPGDRLQPDEVSWFRLDIGRNR 481 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 A+ +WL+P++CR GI +Q IG+IR P+ T EV+ Sbjct: 482 NADPKWLIPLICRIGGITKQQIGSIRTFPEETRFEVA 518 >gi|258543522|ref|YP_003188955.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01] gi|256634600|dbj|BAI00576.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01] gi|256637656|dbj|BAI03625.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03] gi|256640710|dbj|BAI06672.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07] gi|256643765|dbj|BAI09720.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22] gi|256646820|dbj|BAI12768.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26] gi|256649873|dbj|BAI15814.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32] gi|256652863|dbj|BAI18797.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655917|dbj|BAI21844.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12] Length = 586 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 264/523 (50%), Positives = 346/523 (66%), Gaps = 19/523 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+N P + AL+ RG+ T+VQ A+L D + +D+LVSA+TGSGKTVAFGL LA LL Sbjct: 3 FQNAPAPLARALAARGFTAPTAVQAAVLADDAKNRDLLVSARTGSGKTVAFGLTLADLLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + R P+ AP+AL IAPTRELA+QV ELEWLYA+TG + C+GG+ +E R L + Sbjct: 63 NDAGRCVPSGAPIALVIAPTRELALQVRSELEWLYAETGARIVSCVGGMEPRKEARALAS 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRLCDH+R L++SHLKAVVLDEADEMLDLGFRD++E +LD+ PK+RR L Sbjct: 123 GCHIVVGTPGRLCDHLRRGALDLSHLKAVVLDEADEMLDLGFRDELETLLDAMPKERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSATI+ I LA+ YQ+DA+R++ N H+DI YRAVL D +VN+LR Sbjct: 183 LFSATIARDIAALARRYQQDALRIDTVGTNTPHADITYRAVLTEQGDMAGTVVNVLRLME 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVFC TR +V + +L E F VA+SG+L Q ERS A++ +R G+ARVC+ATDV Sbjct: 243 SSAAIVFCHTREAVRQLQAILTERGFSSVAISGDLGQNERSRAIESLRHGQARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+PDL LVIHA L SNP LLHRSGRTGRAG+KG V ++P +R AERL + A Sbjct: 303 AARGIDIPDLGLVIHASLPSNPATLLHRSGRTGRAGKKGTCVLLVPPARRRLAERLLQAA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHDPEKIAAGFL 421 V+ W AP+ AI DA+R+L P D + ++ L+A+H PE++AA + Sbjct: 363 KVTAEWSGAPTPAAIATADAERLLGAPFLSAPAPEDAETQTLIGRLVAEHTPEQLAAALV 422 Query: 422 RIHRAGLCAPEE---ITPVSLVSGRDR-----FRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 + L AP ITP + + R+R R+ RA + G WF LSV Sbjct: 423 GLWHKSLPAPVSVRVITPDARRAPRERDPNRPVRERERAPAMDG---------KWFRLSV 473 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 G + +A+ +WL+PMLCR I +Q IG+IR+ D T VE+S D Sbjct: 474 GREDRADPKWLVPMLCRLGNIKKQDIGSIRITQDHTLVEISPD 516 >gi|103487316|ref|YP_616877.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] gi|98977393|gb|ABF53544.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] Length = 610 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 249/519 (47%), Positives = 345/519 (66%), Gaps = 15/519 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE++ V+ +AL+ RGY LT VQ + + + +D+LVSAQTGSGKTVAFGLA+A L+ Sbjct: 3 FEHLSPVLADALAARGYEALTPVQLQVTEAEAKGRDLLVSAQTGSGKTVAFGLAMADELI 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E+ R A++PLAL +APTRELA+QV REL WLYA+ G +A C+GG+ +ERR L Sbjct: 63 -EDGRLPFATSPLALIVAPTRELALQVSRELGWLYARAGARIATCVGGMDASKERRALNQ 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGRL DH+ L+++ L+ VLDEADEMLD+GFRDD+E ILD++P+ RR L Sbjct: 122 GVQIVVGTPGRLRDHLERGALDLAALRVAVLDEADEMLDMGFRDDLEEILDATPETRRTL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSATI I LAK YQ+DA+R++ E+R H DI Y+AV VA +D + A+VN+LR H Sbjct: 182 LFSATIPKPIVQLAKRYQRDALRISTVGEDRGHGDIAYQAVTVAPADIEGAVVNLLRLHD 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ A++FC+TR +V R L E F VALSGE SQ ER+ ALQ +RD RA+VC+ATDV Sbjct: 242 AETAMLFCATRDNVRRLHASLVERGFAAVALSGEHSQNERNQALQALRDRRAKVCVATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LVIH E+ + E L HRSGRTGRAG+KG +V ++P +RR + + R A Sbjct: 302 AARGIDLPTLSLVIHVEIPRDAEALQHRSGRTGRAGKKGTAVIIVPYPRRRRVDGMLRGA 361 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 ++ W AP+ +R++D +R+++ L + ++ + L+A+ PE IAA +R Sbjct: 362 RINAEWMDAPTAADVRQKDQERLIEKLLAPVEHEPEDLALAQRLMAERTPEDIAASLVRA 421 Query: 424 HRAGLCAPEEITPVSLVSGRD---------RFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474 HRA + PE++ + GRD RF R GG R+ F+ + WF L++G Sbjct: 422 HRALMPPPEDLLD-NGPRGRDATGRPERGERFERPER----GGDRREGFEDAVWFRLNIG 476 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 Q A+ RW++P+LCR +++ IGAIR+ P T + Sbjct: 477 RHQNADPRWILPLLCRRGHVSKNEIGAIRIGPKETMFNI 515 >gi|77462023|ref|YP_351527.1| ATP-dependent RNA helicase [Rhodobacter sphaeroides 2.4.1] gi|77386441|gb|ABA77626.1| ATP-dependent RNA helicase [Rhodobacter sphaeroides 2.4.1] Length = 602 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 249/473 (52%), Positives = 327/473 (69%), Gaps = 11/473 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +GY +LT VQEA+L + +D LVSAQTGSGKTVAFG+A+A +L DR A P+A Sbjct: 17 KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 76 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 LAIAPTRELA+QV REL WLY + G +A C+GG+ ERR L GAHIVVGTPGRL D Sbjct: 77 LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+ I LA Sbjct: 137 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 K +Q+DAVR+ A E +QH+DI+YRA+ V+ D+++AI N+LR++ A +AIVFC TR +V Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 256 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 HA+L +N E LLHRSGRTGRAG KG+SV + + R+A+RL A + W PS + Sbjct: 317 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 376 Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437 ++ERD R+L+ P+ + DE + + LL + P +++A F+R+ R G APE + + Sbjct: 377 VQERDDARLLEHPVLGQDLS-DEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 435 Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCR 490 + R + R F + W++++VG +AEARWL+P R Sbjct: 436 APPEPSQRAPRE----------RGEFGEAVWYAVAVGHTGRAEARWLLPQDLR 478 >gi|170749797|ref|YP_001756057.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170656319|gb|ACB25374.1| DEAD/DEAH box helicase domain protein [Methylobacterium radiotolerans JCM 2831] Length = 583 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 263/503 (52%), Positives = 336/503 (66%), Gaps = 6/503 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F +P + ALS+RGY + T VQ A+L +D+LVSAQTGSGKTVA+GLA+AS L+ Sbjct: 3 FPTLPAPLARALSDRGYADPTPVQAAVLEAAAGSRDLLVSAQTGSGKTVAYGLAMASMLI 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E DR P +APLAL IAPTRELA+QV REL WLY G VA C+GG+ RE R L Sbjct: 63 GEADRLPPPAAPLALVIAPTRELALQVQRELSWLYGPAGGRVAACVGGMDPRRESRMLAE 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRL DH+ + L+ + L+AVVLDEADEMLDLGFR+DIEFIL ++P +R Sbjct: 123 GTHIVVGTPGRLRDHLERRNLDPTALRAVVLDEADEMLDLGFREDIEFILSATPPERATY 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LA+ YQ+DA+R+ I E R H+DI YRAV + + ++ ++N+LR Sbjct: 183 LFSATLPKGIEALAERYQRDALRLAIKGETRGHADIAYRAVRIMPRETEHVVLNLLREAD 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AK AIVFC+TR +V L E F VVALSGEL Q ER+ ALQ +RDGRARVC+ATDV Sbjct: 243 AKTAIVFCNTRNAVRHLQASLTERGFSVVALSGELGQGERNAALQALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LVIHA+L + E + HRSGRTGRAGRKG SV +IP + +RRAE++F A Sbjct: 303 AARGIDLPSLSLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVLLIPNSRRRRAEQMFAIA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 VS W PS + IR D +R+L DPLF + ++ + + LLA PE++AA R+ Sbjct: 363 KVSPEWSGPPSADEIRRLDGERMLSDPLFAEPPAEEDVALAETLLAGKSPEELAALLARV 422 Query: 424 HRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVGGGSRDNFKGSS-WFSLSVGSKQKAEA 481 +R L APEE++ G R R + + R G + WF L++G + A+ Sbjct: 423 YRTRLPAPEEVS----DPGEGRAPRGERPPYDPMDPERIAAMGPAVWFRLNLGRRDNADP 478 Query: 482 RWLMPMLCRSSGINRQSIGAIRV 504 R L+PML R GI RQ IGAIR+ Sbjct: 479 RRLLPMLTRRGGIGRQEIGAIRI 501 >gi|329113602|ref|ZP_08242382.1| Cold-shock DEAD box protein A-like protein [Acetobacter pomorum DM001] gi|326697124|gb|EGE48785.1| Cold-shock DEAD box protein A-like protein [Acetobacter pomorum DM001] Length = 584 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 272/574 (47%), Positives = 362/574 (63%), Gaps = 17/574 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+N P + AL+ RG+ T+VQ A+L D + +D+LVSA+TGSGKTVAFGL LA LL Sbjct: 3 FQNAPAPLARALAARGFTAPTAVQAAVLADDAKNRDLLVSARTGSGKTVAFGLTLADLLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + R P+ AP+AL IAPTRELA+QV ELEWLYA+TG + C+GG+ +E R L + Sbjct: 63 NDAGRCVPSGAPIALVIAPTRELALQVRSELEWLYAETGARIVSCVGGMEPRKEARALAS 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HIVVGTPGRLCDH+R L++SHLKAVVLDEADEMLDLGFRD++E +LD+ PK+RR L Sbjct: 123 GCHIVVGTPGRLCDHLRRGALDLSHLKAVVLDEADEMLDLGFRDELETLLDAMPKERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSATI+ I LA+ YQ+DA+R++ N H+DI YRAVL D +VN+LR Sbjct: 183 LFSATIARDIAALARRYQQDALRIDTVGTNTPHADITYRAVLTEQGDMAGTVVNVLRLME 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVFC TR +V + +L E F VA+SG+L Q ERS A++ +R G+ARVC+ATDV Sbjct: 243 SSAAIVFCHTREAVRQLQAILTERGFSSVAISGDLGQNERSRAIESLRHGQARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+PDL LVIHA L SNP LLHRSGRTGRAG+KG V ++P +R AERL + A Sbjct: 303 AARGIDIPDLGLVIHASLPSNPATLLHRSGRTGRAGKKGTCVLLVPPARRRLAERLLQAA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHDPEKIAAGFL 421 V+ W AP+ AI DA+R+L P D + ++ L A+H PE++ A + Sbjct: 363 KVTAEWSGAPTPAAIATADAERLLAAPFLSAPAPEDAETQTLISRLAAEHTPEQLGAALV 422 Query: 422 RIHRAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 + L AP + ++ + R R RD +R + R WF LSVG + +A Sbjct: 423 GLWHKSLPAPVSVRVLTPDARRAAPRERDPNRPVR--ERERAPAMDGKWFRLSVGREDRA 480 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----------GVDLLRRTVKLDK 529 + +WL+PMLCR I +Q IG+IR+ D T VE+S D D TV+ Sbjct: 481 DPKWLVPMLCRLGNIKKQDIGSIRITQDHTLVEISPDKAEQFASCASATDPDEITVEPAA 540 Query: 530 GIQLKYLGGEKPDFRGYKSSGFKS-KNSQDGATK 562 + GG +P + K G +S ++GA+K Sbjct: 541 APRKGGGGGSRPAYADRKPKGGRSFAPRREGASK 574 >gi|261324240|ref|ZP_05963437.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|261300220|gb|EEY03717.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] Length = 537 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/421 (55%), Positives = 310/421 (73%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + + I + AL+ RGY LT+VQ A+L P+ D+LVSAQTGSGKTVAFGLA+A+ Sbjct: 1 MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG+ + ERR Sbjct: 61 TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EFIL +P+ R Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +RD+AI+N L Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MRDGRARVC+A Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + +R AERL Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ PE+IA+ F Sbjct: 361 HMAKLDAQTVPAPSIAAVQVKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420 Query: 421 L 421 L Sbjct: 421 L 421 >gi|126738873|ref|ZP_01754569.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6] gi|126720054|gb|EBA16761.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6] Length = 463 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 251/431 (58%), Positives = 317/431 (73%), Gaps = 9/431 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + AL RGY +LT VQEA+ +PDL D+LVSAQTGSGKTV FGLA+A T+L E+ Sbjct: 33 LKQTLSLALERRGYTSLTPVQEAVTDPDLGTGDLLVSAQTGSGKTVGFGLAIADTVLGED 92 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 DRF+ A+APLAL IAPTRELA+QV REL WLY + G VVA C+GG+ + ERR L GAH Sbjct: 93 DRFAAAAAPLALVIAPTRELALQVKRELAWLYGEAGAVVASCVGGMDMRDERRALDRGAH 152 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VV TPGRL DHI +++S L+AVVLDEADEMLDLGFR+D+EFIL +P++R+ L+FS Sbjct: 153 LVVATPGRLRDHIMRGSIDLSDLRAVVLDEADEMLDLGFREDLEFILGEAPEERQTLLFS 212 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ PAI LA++YQ+DA R++ +E QHSDIDY+A+LV+ D DNAI+N+LR++ A N Sbjct: 213 ATVPPAIEHLARSYQRDAKRISTVAETSQHSDIDYQAMLVSQRDGDNAIINVLRFYEAPN 272 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVFC+TRA V+R L+ F VVALSGELSQ ERS+ALQ MRDGRARVC+ATDVAAR Sbjct: 273 AIVFCNTRAMVNRLLSRLSNRGFAVVALSGELSQAERSHALQAMRDGRARVCVATDVAAR 332 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GIDLP+LELVIHAEL S+ E LLHRSGRTGRAGRKG+S V+ +++AERL + A + Sbjct: 333 GIDLPNLELVIHAELPSSHETLLHRSGRTGRAGRKGVSALVVSPKSRKKAERLLKMAKLH 392 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 W APS EA+R +D +R+L DP + + E++M+ L P A G Sbjct: 393 ANWGGAPSAEAVRSKDTERMLNDPSWTEDQSSGEEEMIAQLT---QPSPRATGRW----- 444 Query: 427 GLCAPEEITPV 437 L AP E P+ Sbjct: 445 -LPAPVECQPL 454 >gi|326537854|gb|ADZ86069.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis M5-90] Length = 575 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 251/541 (46%), Positives = 352/541 (65%), Gaps = 35/541 (6%) Query: 52 VAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111 +AFGLA+A+T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG Sbjct: 1 MAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGG 60 Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171 + + ERR L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EF Sbjct: 61 MDIRTERRALERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEF 120 Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 IL +P+ RR LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +R Sbjct: 121 ILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHER 180 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 D+AI+N L Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MR Sbjct: 181 DHAIINTLLYYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMR 240 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 DGRARVC+ATDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + Sbjct: 241 DGRARVCVATDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFS 300 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411 +R AERL A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ Sbjct: 301 RRRSAERLLHMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERY 360 Query: 412 DPEKIAAGFLRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG------- 458 PE+IA+ FL A A EE++ PV V G+ DRF R + Sbjct: 361 TPEQIASAFLNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGE 420 Query: 459 --SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 R+ WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A Sbjct: 421 RFDRNARFDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAAS 480 Query: 517 GVDLLRRTVKLDKGIQLKYL---------GGE----------KPDFRGYKSSGFKSKNSQ 557 D R++V ++G K L GG+ KP +K GF+ + Sbjct: 481 KADEFRQSVA-ERGTGEKSLVIRTAVTGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKS 539 Query: 558 D 558 D Sbjct: 540 D 540 >gi|225626665|ref|ZP_03784704.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti str. Cudo] gi|254709276|ref|ZP_05171087.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella pinnipedialis B2/94] gi|256030799|ref|ZP_05444413.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella pinnipedialis M292/94/1] gi|256158820|ref|ZP_05456681.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti M490/95/1] gi|256254205|ref|ZP_05459741.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti B1/94] gi|260169703|ref|ZP_05756514.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella sp. F5/99] gi|261221354|ref|ZP_05935635.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti B1/94] gi|261316783|ref|ZP_05955980.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis B2/94] gi|261759240|ref|ZP_06002949.1| ATP-dependent RNA helicase [Brucella sp. F5/99] gi|265987854|ref|ZP_06100411.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265997314|ref|ZP_06109871.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M490/95/1] gi|225618322|gb|EEH15365.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti str. Cudo] gi|260919938|gb|EEX86591.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti B1/94] gi|261296006|gb|EEX99502.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis B2/94] gi|261739224|gb|EEY27220.1| ATP-dependent RNA helicase [Brucella sp. F5/99] gi|262551782|gb|EEZ07772.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M490/95/1] gi|264660051|gb|EEZ30312.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 575 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 250/541 (46%), Positives = 350/541 (64%), Gaps = 35/541 (6%) Query: 52 VAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111 +AFGLA+A+T+L + RF A APLA+ IAPTRELA+QV RELEWLYA TG +A C+GG Sbjct: 1 MAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGG 60 Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171 + + ERR L+ G+HIVVGTPGRL DHI L++S L+A+VLDEADEMLD+GFR+D+EF Sbjct: 61 MDIRTERRALERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEF 120 Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 IL +P+ RR LMFSAT+ I LAK +Q +A+R+ + SE QH+DIDY A+ V +R Sbjct: 121 ILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHER 180 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 D+AI+N L Y+ ++N+I+FCSTR +V L+ F VVALSGELSQ ER+NALQ MR Sbjct: 181 DHAIINTLLYYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMR 240 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 DGRARVC+ATDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG V V+P + Sbjct: 241 DGRARVCVATDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFS 300 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411 +R AERL A + PAPS+ A++ + +RIL +F ++ + ++++ L ++ Sbjct: 301 RRRSAERLLHMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERY 360 Query: 412 DPEKIAAGFLRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG------- 458 PE+IA+ FL A A EE++ PV V G+ DRF R + Sbjct: 361 TPEQIASAFLNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGE 420 Query: 459 --SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 R+ WFS+S G K +A+ +WL+P++C++ ++++ +G+I++ + T E++A Sbjct: 421 RFDRNARFDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAAS 480 Query: 517 GVDLLRRTVKLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQ 557 D R++V ++G K L G KP +K GF+ + Sbjct: 481 KADEFRQSVA-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKS 539 Query: 558 D 558 D Sbjct: 540 D 540 >gi|188584150|ref|YP_001927595.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] gi|179347648|gb|ACB83060.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] Length = 567 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 265/517 (51%), Positives = 349/517 (67%), Gaps = 13/517 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILN--PDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P + AL+ER Y T VQ+A+L+ PD +D+LVSAQTGSGKTVAFGLA+A T Sbjct: 3 FPSLPSPLARALTERNYAEPTPVQQAVLDAAPD---RDLLVSAQTGSGKTVAFGLAIAGT 59 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 LL + P +APLAL IAPTRELA+QV REL WLYA+TG V C+GG+ RE R L Sbjct: 60 LLGPEEALPPPAAPLALVIAPTRELALQVQRELTWLYAQTGARVVPCVGGMDPRREARAL 119 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G HIVVGTPGRL DH+ L L+AVVLDEADEMLD+GFR+D+EFIL ++P+ RR Sbjct: 120 EAGVHIVVGTPGRLRDHMERGRLVTEGLRAVVLDEADEMLDMGFREDLEFILAATPEDRR 179 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSAT+ AI LA++YQ+DA+R+ +A E R H+DI YRAV V + ++A+VN+LRY Sbjct: 180 TLLFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREIEHAVVNVLRY 239 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 A AIVFC+TR V L E F VALSGEL Q ER+ ALQ +RDGRARVC+AT Sbjct: 240 VDAPVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVAT 299 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGIDLP L+LVIHA+L + E + HRSGRTGRAGRKG SV ++P +RRAE++F Sbjct: 300 DVAARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPARRRRAEQMFA 359 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLF----LDSIQGDEKKMVDVLLAKHDPEKIA 417 A VS W P+ + IR D +R++ DPL + + E+ + L+ + PE++A Sbjct: 360 IAKVSPDWSGPPNADEIRTLDRERMMSDPLLAEPETEEEREWERDWAEALMERFPPERLA 419 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-FKVGGGSRDNFKGSSWFSLSVGSK 476 A F R++R+ + PEE++ + + R R DSR+ VG + ++WF L++G + Sbjct: 420 AAFARLYRSRIPVPEEVSDPAYETSR---RPDSRSGVPVGAPRVGEDEPAAWFRLNLGRR 476 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +AE R L+PML R I R IGAIR+ + T EV Sbjct: 477 DRAEPRRLLPMLTRRGQIGRGDIGAIRIFDNETTFEV 513 >gi|302382668|ref|YP_003818491.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264] gi|302193296|gb|ADL00868.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 728 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 250/508 (49%), Positives = 336/508 (66%), Gaps = 23/508 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLRE---------KDVLVSAQTGSGKTVAFGLALASTLLA 64 ALSERGY T VQ A+L L E +D+LVSAQTGSGKTVAFGLALA TLL Sbjct: 13 ALSERGYAEPTPVQAAVLEAALSEDGSVDAESGRDLLVSAQTGSGKTVAFGLALAPTLLG 72 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 E +RF+ APLAL IAPTRELA QV EL WLYA+TG + C+GG+ ERR L+ G Sbjct: 73 EAERFTDFGAPLALVIAPTRELAQQVASELTWLYAQTGARIVSCVGGMDPKVERRALERG 132 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHIVVGTPGRL DH+ L++S +AVVLDEADEMLD+GF++D+ FILD++P RR LM Sbjct: 133 AHIVVGTPGRLRDHLERGALDLSEARAVVLDEADEMLDMGFQEDLTFILDAAPPTRRTLM 192 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I LAK YQ+DA+R++ + N+ H+DI+Y+A+ A ++ + A+VN+LRY A Sbjct: 193 FSATLARDIVQLAKTYQRDAIRIDTVAGNKSHADIEYKAIRCAPNEIELAVVNVLRYFEA 252 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A+VF +TR V T L E F VV LSGEL+Q RS ALQ +RDG ARVC+ATDVA Sbjct: 253 PGALVFANTRERVKHLTASLRERGFSVVGLSGELTQSARSEALQALRDGHARVCVATDVA 312 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+DLPDL LVIHAE+ N LLHRSGRTGRAG+KG+SV ++ +R+ E + + A Sbjct: 313 ARGLDLPDLGLVIHAEIPVNKAGLLHRSGRTGRAGKKGVSVLLVSYTRRRKVELMLQSAA 372 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFLRI 423 + W PS E I E+D +R+L DP ++ E ++ +LL + PE++AA +R+ Sbjct: 373 IVAEWSGPPSAEMILEKDRERLLADPALTAPVEDAEALELGRLLLERTTPEQVAASLIRL 432 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NF-KGS--SWFSLSVGSK 476 +R L APE+ V DR + K G D +F +G +WF +++G Sbjct: 433 YRQKLPAPED------VYDDDRMKRQQETGKNDRGQTDAPFQDFARGGEMAWFRINIGRD 486 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRV 504 + A+ +WL+P +CR + ++ IG+I++ Sbjct: 487 KNADPKWLLPTICRIGHVTKRDIGSIKI 514 >gi|296535750|ref|ZP_06897913.1| ATP-dependent RNA helicase DeaD [Roseomonas cervicalis ATCC 49957] gi|296263919|gb|EFH10381.1| ATP-dependent RNA helicase DeaD [Roseomonas cervicalis ATCC 49957] Length = 411 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 237/408 (58%), Positives = 292/408 (71%), Gaps = 2/408 (0%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F +P+ + AL+ERGY T+VQ A+L P+ +D+LVSAQTGSGKTVAFGLALA LL Sbjct: 3 FPVMPEALLRALTERGYAEPTTVQAAVLEPETAGRDLLVSAQTGSGKTVAFGLALAPELL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E +R PA APLA+ +APTRELA+QV EL WLYA G V C+GG+ ERR L Sbjct: 63 GEAERMPPAGAPLAIVVAPTRELALQVRAELSWLYAAAGGRVVSCVGGMDPLAERRALAQ 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+ L L+AVVLDEADEMLDLGFR+++E IL ++P++RR L Sbjct: 123 GAHIVVGTPGRLCDHLDRGNLRPEALRAVVLDEADEMLDLGFREELEMILGAAPEERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ P I LA ++Q+DA+R++ +E QH DI Y+AV VA D + A+VN+LR Sbjct: 183 LFSATVPPEIERLAGHFQRDALRISAKAEGGQHRDIAYKAVQVAPQDTERAVVNLLRLSD 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVFCSTRA+V+R LAE F VALSGELSQ ERS ALQ +RDGRA+VC+ATDV Sbjct: 243 SLRAIVFCSTRAAVTRLQANLAERGFSAVALSGELSQAERSRALQALRDGRAQVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLPDL LVIHAEL PE +LHRSGRTGRAGRKG+SV V+P N +R AERL A Sbjct: 303 AARGIDLPDLGLVIHAELPKEPETMLHRSGRTGRAGRKGISVLVVPPNRRRTAERLLMAA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLA 409 V W PAP+ E IR +DA+R+ L + D+ + + LLA Sbjct: 363 RVQAEWGPAPAAEEIRAKDAERLASQAQALLAEEASADDLAVAEALLA 410 >gi|153005772|ref|YP_001380097.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152029345|gb|ABS27113.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. Fw109-5] Length = 585 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 257/587 (43%), Positives = 355/587 (60%), Gaps = 20/587 (3%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 M F ++ P ++ AL RGY+ TSVQ A+L P R +D+LVS++TGSGKTVAFGLA Sbjct: 1 MNTFSSVGAHPALL-PALDRRGYLEPTSVQAAVLEPAHRGQDLLVSSRTGSGKTVAFGLA 59 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 LA TLL + D F A P AL +APTRELAVQV REL WL+A G VA C+GG+ RE Sbjct: 60 LAETLLGDADAFGEAGPPGALVVAPTRELAVQVQRELAWLFADAGGRVASCVGGMDPRRE 119 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R L G H+VVGTPGRL DH+ L++S L+A+VLDEADEMLD+GFR+++E +L ++P Sbjct: 120 ARALAEGTHVVVGTPGRLVDHLERGALDLSALRALVLDEADEMLDMGFREELEKLLGAAP 179 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 RR ++FSAT+ I LAK Y +DA R+ H+DI YRA +VA +R++A+VN Sbjct: 180 PDRRTVLFSATLPRPILELAKRYTRDASRIAATPAGEAHADIAYRAHVVAPREREHAVVN 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +LR +A+VF +TR +V L E F+VVA+SGEL+Q ER+ AL+ +RDGRARV Sbjct: 240 VLREAEPPSALVFRATREAVQHTAVSLGERGFEVVAISGELTQAERTRALKSLRDGRARV 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARG+DLP + LV+HA+L + E L HRSGRTGRAGRKG++V + + R E Sbjct: 300 LVATDVAARGLDLPGIALVLHADLPRDAEALQHRSGRTGRAGRKGVAVLLAAPPERYRLE 359 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-HDPEKI 416 R+ R+A V W P P+ EAIR DA+R+ D + L +E LA+ ++ Sbjct: 360 RMLRDAGVRAEWTPVPTAEAIRAGDAERLAADVVALAGDAAEEDLAAARRLAESRSALEL 419 Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476 A +R R+ APEE+ + + R + RA + G + + WF LS+G Sbjct: 420 AVALVRRDRSRRPAPEELPETARAAREVPARAEKRAPRAGPPA-----NAVWFRLSLGRA 474 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK------LDKG 530 ++A+ RW++P+LCR G+ R IG I +QP+ T EV+AD R + D Sbjct: 475 RQADPRWVLPLLCRRGGVTRDEIGKIVIQPEETRFEVAADAAQRFLRAARRPDPRMPDAR 534 Query: 531 IQL----KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573 I+L G + R ++ G + DG +R A+K Sbjct: 535 IELLGTNPRAGEPRHAPRPVRAEGARRHERADGEPAPPRRSAPAAKR 581 >gi|218658884|ref|ZP_03514814.1| ATP-dependent RNA helicase protein [Rhizobium etli IE4771] Length = 329 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 221/329 (67%), Positives = 262/329 (79%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F + I +AL +RGY LT VQ+++L+ DL D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDSDLAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +RF A APLAL IAPTRELA+QV RELEWLY TG V+A C+GG+ + ERR Sbjct: 61 TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GAHIVVGTPGRLCDHIR L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R Sbjct: 121 LERGAHIVVGTPGRLCDHIRRNALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDER 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ AI LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y+ A NAIVFCSTRA+V+ T F VVALSGEL+Q ERS+ALQ MRDGRARVCIA Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERSHALQAMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLL 329 TDVAARGIDLP L+LVIHA+L +NPE LL Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLL 329 >gi|217976419|ref|YP_002360566.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2] gi|217501795|gb|ACK49204.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2] Length = 505 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/411 (55%), Positives = 286/411 (69%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F++ + AL+ER Y T VQ A L P +D+LVSAQTGSGKTVA+GLA+A L Sbjct: 3 FQSSNPALARALAERNYDQATDVQTAALEPAAAGRDLLVSAQTGSGKTVAYGLAIAEDLF 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 A A PLAL I PTRELA+QV RELEWLY G V C+GG+ RERRDL Sbjct: 63 AGAPALGAAGEPLALIITPTRELALQVQRELEWLYHYAGARVISCVGGMEPRRERRDLAA 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRL DHI L +S LKAVVLDEADEMLDLGFR+D+EFIL+++P +RR L Sbjct: 123 GAHIVVGTPGRLRDHIERGALIVSRLKAVVLDEADEMLDLGFREDLEFILETTPPERRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I TLAK +QK+A+R+ +A + R H+DI+YRA+ VA ++ ++A+VN+LR Sbjct: 183 LFSATLPKGIATLAKRFQKNALRIEVAGKERGHADIEYRAMRVAPNEIEHAVVNVLRMID 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AIVFC+TR +V L E F LSGELSQ ER++ALQ +RDGRARVC+ATDV Sbjct: 243 PPGAIVFCNTREAVRHLHAFLVERGFSAALLSGELSQNERNHALQALRDGRARVCVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L LVIHA+L + E L HRSGRTGRAGRKG+S+ ++P +RRAERL EA Sbjct: 303 AARGIDLPGLALVIHADLPHDAEILQHRSGRTGRAGRKGISIILVPSARKRRAERLLMEA 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 + W P+ E IR D +R+L+DPL + I ++ ++ LL + PE Sbjct: 363 GLQPSWSGPPTAEEIRRLDHERLLRDPLLDEPIGEEDSEIARALLDERSPE 413 >gi|86159465|ref|YP_466250.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775976|gb|ABC82813.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 565 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 235/505 (46%), Positives = 321/505 (63%), Gaps = 6/505 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + AL RGY T+VQEA+ P LR +D+LVS+ TGSGKTVAFGL L +LL + F Sbjct: 12 LARALERRGYSEPTAVQEAVFTPGLRGRDLLVSSATGSGKTVAFGLVLGGSLLGDAPAFG 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PA PL L +APTRELA+QV REL WL A+ V C+GG+ RE R L +GAH+VVG Sbjct: 72 PAGLPLGLVVAPTRELAMQVQRELAWLLAEAEGRVVACVGGMDARREARALSDGAHLVVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH R L++S L+A+VLDEADEMLD+GFRD++E IL ++P+ RR +MFSAT+ Sbjct: 132 TPGRLLDHHRRGALDLSDLRALVLDEADEMLDMGFRDELEAILAAAPEGRRTIMFSATLP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ Y D RV H+DI +RA LVA S+R+ A+VN+LR A+VF Sbjct: 192 KPIVELARRYTTDPARVAATPAGGAHADIAFRAHLVAPSERELAVVNVLRALEPPRALVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +TR + L+E F V +SGEL+Q ER+ AL +RDGRARV +ATDVAARG+DL Sbjct: 252 RATREAAHHTASSLSERGFAAVPISGELTQAERNRALVALRDGRARVLVATDVAARGLDL 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P L+LV+HA+L +P L HRSGRTGRAGRKG++V + + + ER+ R+A V V W Sbjct: 312 PGLDLVLHADLPRDPAALQHRSGRTGRAGRKGLAVLLAAPPERYKLERMLRDAGVRVEWA 371 Query: 371 PAPSVEAIRERDAQRILQDPLFL-DSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P P+ E+IR D R+ + L + + DE+ LL+ DP +AA +R RA L Sbjct: 372 PVPAAESIRAADDARLAGEVDALSEDVSDDERAAAARLLSGRDPLLVAAALVRTTRARLP 431 Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489 +PE++T + + + RA + G + +WF +++G ++KA+ +WL+P+LC Sbjct: 432 SPEDLTETAHAARQAPAPRADRAPRRGPPAE-----VAWFRINIGREKKADPKWLLPLLC 486 Query: 490 RSSGINRQSIGAIRVQPDLTFVEVS 514 R G+ R IG I + T EV+ Sbjct: 487 RRGGVTRDEIGKIVIGAAETRFEVA 511 >gi|220918339|ref|YP_002493643.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956193|gb|ACL66577.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 565 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 237/509 (46%), Positives = 320/509 (62%), Gaps = 16/509 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + AL RGY T+VQEA+ P LR +D+LVS+ TGSGKTVA+GL L +LL + F Sbjct: 12 LARALERRGYTEPTTVQEAVFTPALRGRDLLVSSATGSGKTVAYGLVLGGSLLGDAPAFG 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PA AP L +APTRELA+QV REL WL A+ V C+GG+ RE R L +GAH+VVG Sbjct: 72 PAGAPAGLVVAPTRELAMQVQRELAWLLAEAEGRVVACVGGMDARREARALSDGAHLVVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH R L++S L+A+VLDEADEMLD+GFRD++E IL ++P+ RR ++FSAT+ Sbjct: 132 TPGRLLDHHRRGALDLSELRALVLDEADEMLDMGFRDELEAILAAAPEGRRTILFSATLP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ Y D RV H+DI YRA +VA S+R+ A+VN+LR A+VF Sbjct: 192 KPIVELARRYTSDPARVAATPAGEAHADITYRAHVVAPSERELAVVNVLRALEPPRALVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +TR + L+E F V +SGEL+Q ER+ AL +RDGRARV +ATDVAARG+DL Sbjct: 252 RATREAAHHTASSLSERGFAAVPISGELTQAERNRALVALRDGRARVLVATDVAARGLDL 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P L+LV+HA+L +P L HRSGRTGRAGRKG++V + + + ER+ R+A V V W Sbjct: 312 PGLDLVLHADLPRDPAALQHRSGRTGRAGRKGLAVLLAAPPERYKLERMLRDAGVRVEWA 371 Query: 371 PAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 P P+ EAIR D R+ D L D+ DE+ LL+ DP +AA +R RA L Sbjct: 372 PVPAAEAIRASDEARLAGEVDALSEDATD-DERAAAARLLSGRDPVLVAAALVRSTRARL 430 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWFSLSVGSKQKAEARWL 484 +PE++ P ++ + R G R +G +WF +++G ++KA+ +WL Sbjct: 431 PSPEDL-PETVHAARQ--------APSPRGERAPRRGPPAEVAWFRINLGREKKADPKWL 481 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +P+LCR G+ R IG I + T EV Sbjct: 482 LPLLCRRGGVTRDEIGKIVIGATETRFEV 510 >gi|197123541|ref|YP_002135492.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K] gi|196173390|gb|ACG74363.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K] Length = 565 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 237/509 (46%), Positives = 320/509 (62%), Gaps = 16/509 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + AL RGY T+VQEA+ P LR +D+LVS+ TGSGKTVA+GL L +LL + F Sbjct: 12 LARALERRGYSEPTTVQEAVFTPALRGRDLLVSSATGSGKTVAYGLVLGGSLLGDAPAFG 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PA AP L +APTRELA+QV REL WL A+ V C+GG+ RE R L +GAH+VVG Sbjct: 72 PAGAPAGLVVAPTRELAMQVQRELAWLLAEAEGRVVACVGGMDARREARALSDGAHLVVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH R L++S L+A+VLDEADEMLD+GFRD++E IL ++P+ RR ++FSAT+ Sbjct: 132 TPGRLLDHHRRGALDLSELRALVLDEADEMLDMGFRDELEAILAAAPEGRRTILFSATLP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ Y D RV H+DI YRA +VA S+R+ A+VN+LR A+VF Sbjct: 192 KPIVELARRYTSDPARVAATPAGEAHADITYRAHVVAPSERELAVVNVLRALEPPRALVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +TR + L+E F V +SGEL+Q ER+ AL +RDGRARV +ATDVAARG+DL Sbjct: 252 RATREAAHHTASSLSERGFAAVPISGELTQAERNRALVALRDGRARVLVATDVAARGLDL 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P L+LV+HA+L +P L HRSGRTGRAGRKG++V + + + ER+ R+A V V W Sbjct: 312 PGLDLVLHADLPRDPAALQHRSGRTGRAGRKGLAVLLAAPPERYKLERMLRDAGVRVEWA 371 Query: 371 PAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 P P+ EAIR D R+ D L D+ DE+ LL+ DP +AA +R RA L Sbjct: 372 PVPAAEAIRASDEARLAGEVDALSEDATD-DERAAAARLLSGRDPVLVAAALVRSTRARL 430 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWFSLSVGSKQKAEARWL 484 +PE++ P ++ + R G R +G +WF +++G ++KA+ +WL Sbjct: 431 PSPEDL-PETVHAARQ--------APSPRGERAPRRGPPAEVAWFRINLGREKKADPKWL 481 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +P+LCR G+ R IG I + T EV Sbjct: 482 LPLLCRRGGVTRDEIGKILIGATETRFEV 510 >gi|218673952|ref|ZP_03523621.1| ATP-dependent RNA helicase protein [Rhizobium etli GR56] Length = 499 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 198/382 (51%), Positives = 269/382 (70%), Gaps = 8/382 (2%) Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +F AI LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LRY+ Sbjct: 27 VFGQPCRRAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLRYYE 86 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A NAIVFCSTRA+V+ T F VVALSGEL+Q ERS+ALQ MRDGRARVCIATDV Sbjct: 87 ATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIATDV 146 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S ++P + +R+AERL A Sbjct: 147 AARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLSARRKAERLLENA 206 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 +S W PS E + ERD +R+L DP+F ++ Q +E+ +V LL+ H EK+AA FLR+ Sbjct: 207 GISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAFLRL 266 Query: 424 HRAGLCAPEEITPVSLVSGRDRF-RDDSRAF-KVGGGSRDNFKGSSWFSLSVGSKQKAEA 481 +R APE++ V++ G R RD++ + G R++F S+WFS+SVG KQ AE Sbjct: 267 YRTNRSAPEDLIEVTVQDGGSRKRRDNAEPYAPAQKGPREDFGPSAWFSVSVGRKQNAEP 326 Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLG 537 RWL+PMLCR+ + ++ IGAI++QP+ TFVE++A D + + L++GI++ L Sbjct: 327 RWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASADSFQEALGPNKTLERGIRVTRLS 386 Query: 538 GEKPDF-RGYKSSGFKSKNSQD 558 G PDF R + K+S+D Sbjct: 387 G-TPDFSRAAAQKPYAGKSSRD 407 >gi|73760070|dbj|BAE20150.1| ATP-dependent RNA helicase-like protein [Ketogulonicigenium vulgare] Length = 367 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/333 (58%), Positives = 251/333 (75%) Query: 5 ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64 +NI + ALS+RGY LT+VQ+A+L P+ +D+LVSAQTGSGKTVAFG+A+A LL Sbjct: 27 QNIAAPLAAALSQRGYETLTAVQQAVLAPEADGRDLLVSAQTGSGKTVAFGIAVAPDLLG 86 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 +++ + P+AL IAPTRELA+QV +EL WLYA G +A C+GG+ ERR L Sbjct: 87 DDNILPLNTPPVALFIAPTRELALQVAQELTWLYANAGAQIATCVGGMDYRTERRALARL 146 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVVGTPGRL DHI GL++S L+ VLDEADEMLDLGFRDD+++IL ++P+ RR LM Sbjct: 147 PQIVVGTPGRLRDHIDRGGLDLSELRVTVLDEADEMLDLGFRDDLQYILQAAPEDRRTLM 206 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LA+++Q DA+R+ E +QH+DI Y+A+ V + DR+NAI N+LR++ + Sbjct: 207 FSATVPREIEKLARDFQNDALRLETRGEAKQHNDISYQALSVTMRDRENAIFNMLRFYES 266 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AI+FC TRA+V+ ++ F+VVALSGELSQQER+NALQ +RDGRA VCIATDVA Sbjct: 267 RTAIIFCKTRANVNDLLSRMSGRGFRVVALSGELSQQERTNALQALRDGRANVCIATDVA 326 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 ARGIDLP LELVIH +L +N E LLHRSGRTGR Sbjct: 327 ARGIDLPGLELVIHYDLPTNAETLLHRSGRTGR 359 >gi|92109376|ref|YP_571664.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14] gi|91802458|gb|ABE64832.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14] Length = 340 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 152/280 (54%), Positives = 196/280 (70%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P + AL+ER Y T VQ A+L + ++D+L SAQTGSGKTVA+GLA+A LL Sbjct: 3 FPTTPPPLARALAERSYDQPTPVQIAVLADEAVDRDLLDSAQTGSGKTVAYGLAIAKNLL 62 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + F A+ P AL +APTRELA+QV REL WLY V C+GG+ RE+R+L Sbjct: 63 GGVEWFQRATMPRALIVAPTRELALQVHRELAWLYQYANGRVVSCVGGMDPRREQRELAA 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRLCDH+R L++S LKAVVLDEADEMLDLGFRDD+EFIL ++P+ RR L Sbjct: 123 GAHIVVGTPGRLCDHLRRGRLDVSDLKAVVLDEADEMLDLGFRDDMEFILKTTPEMRRTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSA + I LAK YQ+ A R+ +A + H+DI+YRA+ + SD D+A+VN+LR+ Sbjct: 183 LFSAALPRGIVVLAKRYQQRAFRIEVADDEGGHADIEYRAIRIVASDVDHAVVNVLRFFE 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283 + +A+VFC+TR +V L E F VVALSGEL+Q ER Sbjct: 243 SPSALVFCNTRNAVRHLQATLLERGFSVVALSGELTQNER 282 >gi|307941463|ref|ZP_07656818.1| ATP-dependent RNA helicase DeaD [Roseibium sp. TrichSKD4] gi|307775071|gb|EFO34277.1| ATP-dependent RNA helicase DeaD [Roseibium sp. TrichSKD4] Length = 258 Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 149/259 (57%), Positives = 183/259 (70%), Gaps = 1/259 (0%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M ++PQ + AL ++GY LT VQE IL E D+LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEVSSLPQALQAALEKKGYETLTPVQETILKEAPPEADLLVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL E+D A+AP+ALAIAPTRELA+QV EL WLY + G + C+GG+ ERR Sbjct: 61 TLLGEDDNLGQANAPIALAIAPTRELALQVKEELTWLYREAGATLTSCVGGMDPRTERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L GAHIVVGTPGRL DH+ L++S +KAVVLDEADEMLD+GFR+D+EFILD++P+ R Sbjct: 121 LDRGAHIVVGTPGRLRDHLERGALDLSQIKAVVLDEADEMLDMGFREDLEFILDAAPETR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R LMFSAT+ I LAK +QKDAVR++ S QH DIDY A V S+R+NA++N+LR Sbjct: 181 RTLMFSATVPKPIAELAKRFQKDAVRLSTISAKDQHVDIDYIAHPVVSSERENALINVLR 240 Query: 241 YHGAKNAIVFCSTRASVSR 259 K CSTR +V R Sbjct: 241 CMKRKIH-HLCSTREAVKR 258 >gi|162453584|ref|YP_001615951.1| hypothetical protein sce5308 [Sorangium cellulosum 'So ce 56'] gi|161164166|emb|CAN95471.1| deaD3 [Sorangium cellulosum 'So ce 56'] Length = 632 Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 206/606 (33%), Positives = 289/606 (47%), Gaps = 83/606 (13%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62 + +P + AL+ RG+ +LT VQ+A+L P+L +D+ VS+QTGSGKTVA GLALA L Sbjct: 7 LDALPAPLAGALARRGFTSLTPVQQAVLAPELAGRDLRVSSQTGSGKTVAIGLALAPRLE 66 Query: 63 ---------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113 A + A+AP A+ IAPTRELA Q+ EL WL + G VA GG S Sbjct: 67 RALADRAAAAAPDGAPRTAAAPAAVIIAPTRELAAQIAGELSWLLSPLGARVACVTGGTS 126 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 E R L+ ++ GTPGRL DH+ L+ + A+VLDEAD+MLDLGFRDD+E I+ Sbjct: 127 FGAEARSLRRDPLVIAGTPGRLLDHLDRGTLDPRGVLALVLDEADQMLDLGFRDDLEAIV 186 Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 P R+ + SAT S + LA +Q+DAV V + DI + A LV ++RD Sbjct: 187 GKMPGDRQTHLVSATFSREVRALADRFQRDAVSVEGTRPGAANGDIAHVAHLVLPAERDA 246 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 A+VN+L + +VF TR + L ALSG+L Q+ER+ L R G Sbjct: 247 AVVNLLLLAPGERTLVFVRTREGAAELADKLTALGLPARALSGDLEQRERTRTLDAFRSG 306 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 +ATDVAARGID+P++ VIHA+ +PE HRSGRTGRAGRKG SV ++ + Sbjct: 307 AITTLVATDVAARGIDVPEVGRVIHADPPGDPEIFTHRSGRTGRAGRKGTSVLLVAPFAR 366 Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL-------------------- 393 A RL R A V + PAPS + + +R+ + + Sbjct: 367 EHALRLLRRARVEATFRPAPSPDDVLRAADERLAAELAAVRLEGAAAGDAAAGDAAVVDA 426 Query: 394 ----------DSIQGDEKKMVDVLLAKHDPEKIAAGFL-RIHRAGLCAPEEITPVSLV-- 440 + + +++ LLA D ++ A L R G CAP+ +T V+ Sbjct: 427 NVRGPREASGPAPEARHRQLAARLLADMDATELVAALLARAKHTGPCAPQPVTAVAPPRS 486 Query: 441 --------------SGRDRFRDDSRAFKVGGGSRDNFKGSSW------------------ 468 SG G SR W Sbjct: 487 EPPPSRARPPAPPWSGAPSRARPPAPPWSGAPSRARSSAPPWSEAPSRARPAARQGNGEQ 546 Query: 469 --------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520 F ++ G + A+ R L+ ++CR G++ Q IGAIR+ + VEV++ Sbjct: 547 PPRLPFVPFQVNWGERHGADPRRLLALVCRRGGVSSQQIGAIRIGSTASVVEVASPAAPE 606 Query: 521 LRRTVK 526 R V Sbjct: 607 FARAVN 612 >gi|288574292|ref|ZP_06392649.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570033|gb|EFC91590.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 574 Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 178/527 (33%), Positives = 280/527 (53%), Gaps = 33/527 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ +G+ + VQE +L + R+ D++V A+TGSGKT+ F L L + L E + Sbjct: 22 ALAAKGFDSPMPVQEKVLESENRDGDLVVQARTGSGKTLGFLLPLLNELPRE------TA 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L ++PTRELA Q+ E EW+ G+ A +GG+ + R+ +DL+ G+ +VVGTPG Sbjct: 76 TPRILVLSPTRELAQQIAGEAEWIGKYMGITTASLVGGMDMERQIKDLRRGSALVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R DHIR + L ++ +VLDE D MLD+GFRDDIE IL++ P R +FSAT+ + Sbjct: 136 RTMDHIRRRTLKTDTIQTIVLDEGDTMLDMGFRDDIEAILNTLPDPHRTWLFSATMPDEV 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +L K Y + + + QH DI +RA LV R +VN+L + + ++FC T Sbjct: 196 ASLTKRYLDSPSWITLCHDEDQHEDITHRAYLVPSGKRLEGLVNVLLWENPEMGLIFCHT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 +A + L E F AL G++SQ ER++ + R GR +AT+VAARG+D+ + Sbjct: 256 KAGTVETMERLQEEGFAASALHGDMSQLERNSVMNAFRQGRIPYLVATNVAARGLDVQGV 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI L N E +HRSGRTGRAG++G ++ V+ + R + + R +++ + W P Sbjct: 316 SHVIQIGLPDNLETFVHRSGRTGRAGQEGRNILVLTPREKGRFKAMLRASSMDLKWANVP 375 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431 V I + AQR L++ L + D+ + D LL P + A L + GL Sbjct: 376 DVAEIAK--AQRGLRESALLGGDEPDQEIQAWADELLDMMAPRDLVARLLESYVNGLPNG 433 Query: 432 EEI---------------TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476 ++ SGRDR R R G+R +F+G + S+ + SK Sbjct: 434 YDLRKSLQNELENRRSGRDRGDRFSGRDRNRSPRR--NENRGNRSSFRGRA-QSIKL-SK 489 Query: 477 QKAEARW----LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 + + W ++ +C++ ++R +G IR++ + T VE+ D Sbjct: 490 GRIDQDWSVGRILATVCQALDVDRNEVGNIRMRDNHTEVELGPLAAD 536 >gi|294101359|ref|YP_003553217.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense DSM 12261] gi|293616339|gb|ADE56493.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense DSM 12261] Length = 555 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 181/510 (35%), Positives = 282/510 (55%), Gaps = 25/510 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+E+G+ T VQ+ +L+ + EKD++V A+TGSGKT+AF L L + A +R S Sbjct: 17 KALAEKGFSTPTPVQDRVLSEKIFEKDIIVRAKTGSGKTLAFLLPLLQKITA-GERESKV 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L ++PTREL+ Q+ +E +W V A +GG+ + ++ R L++G+ +V GTP Sbjct: 76 -----LILSPTRELSQQIWKEAKWFGNYINVSAASLVGGMDMSQQIRSLRDGSAVVTGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHIR L+ S +K VVLDE D MLDLGF++++E ILDS P +R+ +FSAT+ Sbjct: 131 GRVLDHIRRGTLDTSGIKIVVLDEGDHMLDLGFKEELEAILDSLPNCQRVWLFSATMPAE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK Y K V +++ E H DI + LV ++ ++N+L + AIVFC Sbjct: 191 IKNLAKRYLKTPVFISLTEEGEAHEDITHEVYLVPTRHKEEGLINVLLWEKPSRAIVFCH 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TRA T+ L + FQ + L GE+SQ+ER+ AL R GR + +AT+VAARG+D+ Sbjct: 251 TRAETVELTRRLHDENFQAMCLHGEMSQRERNMALSQFRSGRTPLLVATNVAARGLDVEG 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI L N E +HRSGRTGRAG +G ++ V+ + + + + + + W+ Sbjct: 311 VSHVIQMGLPDNRETFVHRSGRTGRAGHEGRNLLVLSPKEATGFKSMVKTSTIPITWKNV 370 Query: 373 PSVEAIRERDAQRI-LQDPLF-LDSIQGDEK-KMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P + IR++ QRI ++ +F + + E + D LL ++ + A L + + Sbjct: 371 PDPKDIRKK--QRISYEERVFAAEHYETPENLEWADSLLECNESRAMIARLLGLLFSRKN 428 Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV------GSKQKAEARW 483 A E+T L R R R SR GS+ SL G Q + Sbjct: 429 AGYELT-ADLEQDLKRGRTPRR-------SRSKESGSAGSSLQTTIRIERGRDQGWDVGK 480 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++ ++C + I++ +GAIR+Q D VE+ Sbjct: 481 ILRVICSTLNIDKSGVGAIRLQNDHAQVEL 510 >gi|261314659|ref|ZP_05953856.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261303685|gb|EEY07182.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] Length = 434 Score = 280 bits (716), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 155/385 (40%), Positives = 229/385 (59%), Gaps = 35/385 (9%) Query: 208 NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH 267 ++ SE QH+DIDY A+ V +RD+AI+N L Y+ ++N+I+FCSTR +V L+ Sbjct: 16 SVQSETSQHADIDYVAMPVPPHERDHAIINTLLYYDSQNSIIFCSTREAVKHMASRLSNR 75 Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327 F VVALSGELSQ ER+NALQ MRDGRARVC+ATDVAARGIDLP+L+LVIHA+L +NP+ Sbjct: 76 GFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNPDT 135 Query: 328 LLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387 LLHRSGRTGRAGRKG V V+P + +R AERL A + PAPS+ A++ + +RIL Sbjct: 136 LLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLLHMAKLDAQTVPAPSIAAVQAKTNERIL 195 Query: 388 QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEIT--PVSLVSGR-- 443 +F ++ + ++++ L ++ PE+IA+ FL A A EE++ PV V G+ Sbjct: 196 NAEVFNQPVEEEYQELLKALAERYTPEQIASAFLNREVASYPAAEEVSDAPVHPVGGKKP 255 Query: 444 --DRFRDDSRAFKVGGGS---------RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492 DRF R + R+ WFS+S G K +A+ +WL+P++C++ Sbjct: 256 RSDRFEKGDRYERGERRERGEPGERFDRNARFDGVWFSVSAGRKHRADPKWLLPLICKAG 315 Query: 493 GINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL---------------- 536 ++++ +G+I++ + T E++A D R++V ++G K L Sbjct: 316 DVSKRDVGSIKIFDNETRFEIAASKADEFRQSV-AERGTGEKSLVIRTAVAGAGGDAAAR 374 Query: 537 ---GGEKPDFRGYKSSGFKSKNSQD 558 G KP +K GF+ + D Sbjct: 375 ESRGSFKPRSDKFKEGGFRDGHKSD 399 >gi|312880591|ref|ZP_07740391.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM 12260] gi|310783882|gb|EFQ24280.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM 12260] Length = 561 Score = 280 bits (716), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 182/524 (34%), Positives = 284/524 (54%), Gaps = 28/524 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTL 62 F P+++ AL +G+ N VQ IL D L + D++V A+TGSGKT+AF L L + Sbjct: 9 FSLRPELL-RALERKGFENPMPVQVRILEDDTLLDGDLIVQARTGSGKTLAFALPLLQRM 67 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +R P L ++PTRELA Q RE +W+ + G+ A +GG+ + R+ R L+ Sbjct: 68 -ERGER-----TPQVLVLSPTRELAQQTAREFQWVGGEMGIRPASLVGGMDMDRQIRSLR 121 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 +GA +VVGTPGR+ DH+R L +++++LDE D MLDLGFRD++E I+ + R Sbjct: 122 DGAAVVVGTPGRVLDHLRRGTLRPEGIQSLILDEGDHMLDLGFRDELESIMSALGTVERT 181 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ + TLA+ Y ++++ ++ +H DI RA ++ R + N+L Sbjct: 182 WLFSATMPEDVVTLARKYLNAPRKISLVTDAARHEDIAQRAYVIPSRRRFEGLANVLLCE 241 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K A++FC+TR + L + F+ +AL G+++Q+ER+NAL+ R GR + +ATD Sbjct: 242 HPKRALLFCATRMETQELAERLGDEGFRAMALHGDMTQRERNNALESFRRGRVDLLVATD 301 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ L VI L E +HRSGRTGRAG +G +V ++ R+ + L Sbjct: 302 VAARGLDIDGLSHVIQYGLPGCLETFIHRSGRTGRAGHEGRNVILLTAREARQFKSLVSH 361 Query: 363 ANVSVVWEPAP---SVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIA 417 + + W PAP VE I + ++ L L+S + +E ++ LL + D E++ Sbjct: 362 TALDIEWLPAPDASEVEGISRAEFEKTL-----LESPEDEEAYREWAQQLLQREDTEELL 416 Query: 418 AGFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS----RDNFKGSSWFS 470 AG L +A A E + ++R R D R G GS R G+ Sbjct: 417 AGLLARAFGSQARGYAIREDVEAEMAREQNR-RYDPR--PTGRGSDRPLRKLLDGAVTMK 473 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 + G + E L+ LCR G+ R+ +G IR++ FVE+S Sbjct: 474 FAQGRQDGWEVGALLGALCRGLGVRREDVGNIRLRDHCAFVELS 517 >gi|282855404|ref|ZP_06264727.1| cold-shock deAd box protein a [Pyramidobacter piscolens W5455] gi|282586784|gb|EFB92029.1| cold-shock deAd box protein a [Pyramidobacter piscolens W5455] Length = 467 Score = 273 bits (698), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 232/387 (59%), Gaps = 10/387 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ AL +RG+ T VQ +L+ + D++V A+TGSGKT+AF L L S L Sbjct: 22 NLPESFLAALDQRGFTTPTPVQAQVLSQPNLDTDMVVQARTGSGKTLAFLLPLLSELEGG 81 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + P L ++PTRELA+Q E E+L GV A +GG+S+ + L++GA Sbjct: 82 SKK------PRLLVLSPTRELAMQNASESEFLGRIRGVGTASIVGGMSMEHQIFQLRHGA 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S ++ +VLDE D MLD+GFRD++E IL+++ +++ +F Sbjct: 136 SVVVGTPGRVLDHIRRGTLDLSEIETLVLDEGDNMLDMGFRDELEAILEAAVNRKKTWLF 195 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ ++ +L + Y K+ +R+ + E QH DI +RA LV R A+VNIL + Sbjct: 196 SATMPDSVFSLCRRYLKEPMRLELNHEEEQHEDIVHRAYLVPSRQRMEALVNILLWEKPA 255 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++FC T+ L E +AL+G+++Q+ERSNAL+ R GR + +AT+VAA Sbjct: 256 LCLIFCHTKTDTGEVAGRLQEEGLMALALNGDMTQRERSNALESFRTGRIPILVATNVAA 315 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + VI L N E +HRSGRTGRAG +G ++ ++ R + + R + + Sbjct: 316 RGLDVQGVSHVIQLGLPDNMETFVHRSGRTGRAGHEGSNLLLLTPQESGRFKFMLRSSEM 375 Query: 366 SVVWEPAPSVEAI----RERDAQRILQ 388 V W P ++ I RER + +L+ Sbjct: 376 KVEWLKVPDIQEISVIQRERREESLLE 402 >gi|269792122|ref|YP_003317026.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099757|gb|ACZ18744.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 558 Score = 271 bits (692), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 171/503 (33%), Positives = 269/503 (53%), Gaps = 9/503 (1%) Query: 14 ALSERGYVNLTSVQEAIL-NPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 AL +G+ + VQ ++L +P L + D++V A+TGSGKT+AF L L + + F Sbjct: 19 ALRRKGFEHPMPVQVSMLEDPTLVDGDLIVQAKTGSGKTLAFALPLLNRM-----EFGER 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S P L ++PTRELA+Q RE +WL + VA +GG+ + R+ + L+ GA +VVGTP Sbjct: 74 S-PKVLVLSPTRELALQTAREFQWLGYDLRIRVASLVGGMDMERQVKALREGAAVVVGTP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHIR ++++VLDE D MLDLGF+D++E I+ + + R +FSAT+ Sbjct: 133 GRVLDHIRRGTFRADLVESLVLDEGDHMLDLGFKDELEDIMAAMTQVERSWLFSATMPEE 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + TLAK Y ++++ + +H DI RA ++ R + N+L + + IVFC+ Sbjct: 193 VVTLAKQYLDAPRKISLVEDAAKHDDIVQRAYIIPARRRFEGLANVLLFERPRRGIVFCA 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + F+ AL G+++Q+ER+ AL+ +R GR+++ +ATDVAARG+D+ Sbjct: 253 TKLQTQELAERLCDEGFKASALHGDMTQRERNMALENLRRGRSQILVATDVAARGLDISG 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI L E +HRSGRTGRAG++G ++ ++ + R ++ V W PA Sbjct: 313 VSHVIQFGLPGCLETFIHRSGRTGRAGQEGRNLILLTAREAGEFRGMIRGTSLEVEWLPA 372 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432 P E + I + L + D + +L + D + I AG L G+ Sbjct: 373 PDAEELESLTRAEIERWCLENPAEGEDYMDWAEEILQREDAQLIVAGLLSRSFEGIPKGY 432 Query: 433 EITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRS 491 I V R R D +A + R GS S G + E L+ LCR Sbjct: 433 SIQEDVQAEMARSRRADRPKA-RDQRPLRKLVSGSVTMRFSSGREDGWEVGPLLGALCRG 491 Query: 492 SGINRQSIGAIRVQPDLTFVEVS 514 GI R+ +G I+++ FVE+S Sbjct: 492 LGIRREDVGNIKLKDRCAFVELS 514 >gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis PC909] gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1] gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis PC909] gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1] Length = 538 Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 178/519 (34%), Positives = 277/519 (53%), Gaps = 31/519 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E GYV + +Q + L KD++ AQTG+GKT AF L + + +N Sbjct: 17 KAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLPILEKIDPKNKNVQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELAVQV E + V + I GG S + R L+ G IVVGT Sbjct: 75 ----ALVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQSYDPQIRALKKGVQIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + +LK +VLDEADEML++GF+DDIE IL+ +P+ R+ +MFSAT++ Sbjct: 131 PGRVMDHMRRGTLKLENLKMLVLDEADEMLNMGFKDDIEEILEKTPESRQTVMFSATMAR 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +AK YQK+ V + SE + ID V V DR A++ + G ++IVF Sbjct: 191 EIMNIAKTYQKNPEVVKVVSEELSNKKIDQYYVEVKRQDRVQAMIRCIDMMGLTSSIVFT 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V L E + L G+L Q +R + R + +ATD+AARGID+ Sbjct: 251 NTKREVDELVSKLQEEGYVTEGLHGDLKQAQRDRVMNSFRRKNVNILVATDIAARGIDVS 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 ++E V + ++ N EN +HR GRTGRAG G+S+ FV ++M R R+ + Sbjct: 311 NVEAVFNYDIPLNEENYVHRIGRTGRAGMTGLSITFVFGKDM-FRIRRIEDYTKTKMSKM 369 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQG----DEKKMVDVLLAK-HDPEKIAAGFLRIHR 425 P PSVE I+ + + ++ + + +++G E +++ +L K E++AAG L++ + Sbjct: 370 PIPSVEEIQAKKSTNVIDE--IVANLEGKDFSKENELIAAILEKGFTIEQVAAGLLQM-K 426 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485 G + + +G + + G R N ++VGSKQK +A+ + Sbjct: 427 IGQSTKKYAHIEEVTAGNPKAK----------GMRKN---EVRLFVNVGSKQKVKAKDFV 473 Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLRR 523 ML + S I ++IG I V TF+ V A +++R+ Sbjct: 474 GMLTKKSDIPARAIGDIDVYKKFTFINVDKAHANNIIRK 512 >gi|149918583|ref|ZP_01907072.1| DEAD/DEAH box helicase-like protein [Plesiocystis pacifica SIR-1] gi|149820659|gb|EDM80071.1| DEAD/DEAH box helicase-like protein [Plesiocystis pacifica SIR-1] Length = 672 Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 159/383 (41%), Positives = 222/383 (57%), Gaps = 8/383 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE +P + +A+ ERG+ LTSVQ+A+L+P+LR ++ +S+ TGSGKT+A GLALA +LL Sbjct: 19 FEGVPAPLAKAMRERGFTGLTSVQQAVLSPELRGHNLRISSATGSGKTMALGLALAESLL 78 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQ 122 + R P AL I PTRELA QV EL LY+ GV V V GGV + + R L Sbjct: 79 GDEARSR--RGPTALVITPTRELASQVRGELASLYSMVRGVEVEVVTGGVDIRGDWRRLA 136 Query: 123 NGAHIVVGTPGRLCDHIRG----KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 ++V TPGRL DH+R +G++ S + VVLDEAD+MLD+GFRD+++ I+ P+ Sbjct: 137 RRPRVLVATPGRLLDHMRNDSGERGVDCSDVSHVVLDEADQMLDMGFRDELDAIVAELPE 196 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R + SAT + LA +Q D R V + H DI+ V + +R A+VN Sbjct: 197 SRTSHLVSATFPREVRRLADAFQGDEARTVQGTALGAPHQDIEVTCYSVDMGNRYPALVN 256 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ + ++F R LA F + SGELSQ +R+ L+ R G Sbjct: 257 LMLLASGRRTLIFVRRRIDTDTLASQLASDGFSALPFSGELSQAQRTRTLEAFRSGIVNT 316 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARGID+ D+ VIHA+L ++ N HRSGRTGRAGRKG S ++P+ + R Sbjct: 317 LVATDVAARGIDVADIATVIHADLPTDHANYTHRSGRTGRAGRKGASWLLVPRRAEGRIR 376 Query: 358 RLFREANVSVVWEPAPSVEAIRE 380 RL A V W P+ + IR+ Sbjct: 377 RLLSSAKVEPNWATPPTPKKIRK 399 >gi|260655032|ref|ZP_05860520.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1] gi|260630347|gb|EEX48541.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1] Length = 590 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 193/608 (31%), Positives = 308/608 (50%), Gaps = 76/608 (12%) Query: 3 IFENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +F + P V + + L+ RG+ T VQ +L D ++D++V A+TGSGKT+AF L + S Sbjct: 6 LFSDFPLVAPLIKELASRGFDEPTPVQRGVLGQDDWDRDLVVQARTGSGKTLAFLLPVLS 65 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L + R P + AL ++PTRELA Q+ +E G+ AV +GG+ + R+ Sbjct: 66 ELAS---RLFPGRQTVKALILSPTRELAQQIAQEAASFGRLVGIGTAVLVGGMDMDRQIS 122 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++G + VGTPGR+ DH++ L++S ++ VVLDE D MLD+GFRD++E IL ++ + Sbjct: 123 SLRSGVALAVGTPGRVLDHVKRGTLDLSEIETVVLDEGDTMLDMGFRDELEAILQAASAR 182 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 +R +FSATI +T + + + + V ++ E+ QHSDI ++A LV S R +VN+L Sbjct: 183 KRTWLFSATIPQEVTAVCRRFTTNPVFLSFDDESSQHSDIVHKAYLVPSSQRYEGLVNVL 242 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++FC TR+ + T+ L + F + L G++SQ+ER+ AL R GR V + Sbjct: 243 LWERPSLCLIFCRTRSDTAEVTERLQKEGFLAMPLHGDMSQRERNTALSSFRSGRIPVLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AT+VAARG+D+ + VI + + E +HRSGRTGRAG +G ++ V+ R + + Sbjct: 303 ATNVAARGLDVSGVSHVIQLGVPESLETFVHRSGRTGRAGHEGTNLLVLTPAESSRFKFM 362 Query: 360 FREANVSVVWEPAPSVE-------AIRERD-------------AQRIL----QDPL---- 391 R + V W P + ++R+ AQ +L +DP Sbjct: 363 MRSTQMKVQWLKVPDFQEISVVQRSVRQEKLLAVAPSEEFFSWAQELLETAGEDPTALVA 422 Query: 392 -FLDSIQGDEKK---MVDVLLAKHDPEKIAAGFLRIH--RAGLCAPEEITPVSLVSGRDR 445 L S+ DE K + D LL + + + RAG P E +DR Sbjct: 423 KLLASVTQDEPKGYRLRDSLLQELERRSARREAREMPSGRAGFRRPSE------EQKKDR 476 Query: 446 FRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505 + + ++ G RD+ W SVG ++ LC + G++R IG I+++ Sbjct: 477 YPGSGVSIRIAKGRRDD----DW---SVGR--------ILGALCGALGVDRTEIGNIKMR 521 Query: 506 PDLTFVEVSADGVDLLRRTVKL---DKGIQLKYLGGEK--------PDFRGYKSSGFKSK 554 T V++ + L +L DKG+ L GG+ P R + SG + Sbjct: 522 ETYTEVQLGPKALSQLNSGGRLRLADKGL-LSGEGGQNFVPRLGSAPRRRRFDPSG---R 577 Query: 555 NSQDGATK 562 DG TK Sbjct: 578 KIDDGFTK 585 >gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1] gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1] Length = 540 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 162/508 (31%), Positives = 270/508 (53%), Gaps = 25/508 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ + G+ + +Q + ++ KD++ AQTG+GKT FG+ +A TL + R Sbjct: 29 VAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAETLNPRDGRVQ 88 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA+QV +E+ + + + GG S+ R+ R L+ G +V+G Sbjct: 89 ------ALVLCPTRELAIQVAQEISKIGRQNDLKALPVYGGQSIDRQIRALRYGVQVVIG 142 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ K L +++++ VVLDEADEMLD+GF +DIE IL +P++R+ L+FSAT+ Sbjct: 143 TPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTLLFSATMP 202 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ Y K+ V I+ + I+ S + +A+ IL ++I+F Sbjct: 203 GPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILDMEEIGSSIIF 262 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V L + L G+L+Q +R ++ RDG+A + IATDVAARG+D+ Sbjct: 263 CRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIATDVAARGLDV 322 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ VI+ ++ +PE+ +HR GRTGRAGRKG+++ +I R+ + + R + Sbjct: 323 ENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIERVTKARIQRR 382 Query: 371 PAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 PS+ I R+++A ++ L G+ K ++ L ++DP +IAA L++ G Sbjct: 383 DLPSMADIVERQKEAHKMKIVKLLDGGHFGEYKSIISELAEEYDPMEIAAATLKLLIEGP 442 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 A E +D++ F G+ G +++G Q + ++ + Sbjct: 443 EAETE-------------KDEAPEF----GNTGAEPGMVRLFMNIGRAQGIRPQDIVRAI 485 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +GI IG I + TFVEV D Sbjct: 486 AEEAGIPGNVIGVINIYDKFTFVEVPED 513 >gi|150403372|ref|YP_001330666.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus maripaludis C7] gi|150034402|gb|ABR66515.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis C7] Length = 546 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 177/548 (32%), Positives = 288/548 (52%), Gaps = 34/548 (6%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56 M+ F+N+ I +AL ++G+ N T +QE + P L E +DV+ AQTG+GKT AFG+ Sbjct: 1 MESFKNLGLSDEIIKALEKKGFTNPTPIQEQAI-PILIEGKRDVVGQAQTGTGKTAAFGI 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 + T+ E+ R + A L +APTRELA+QV E++ + + V GG S+ R Sbjct: 60 PILETI-DESSRNTQA-----LILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDR 113 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + R+L+ G IVVGTPGR+ DHI + + + ++ VVLDEADEML++GF DD+E IL S Sbjct: 114 QIRELKRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSV 173 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 ++RML+FSAT+ +I LAKNY ++ + + + + D + D+ + Sbjct: 174 STEKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLS 233 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 I+ ++FC T+A V + L E + L G+++Q +R L + + Sbjct: 234 RIIDVEKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKIN 293 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 V +ATDVAARGID+ DL V++ ++ NPE+ +HR GRTGRAG++G +V + + R+ Sbjct: 294 VLVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKF 353 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414 + + + AN + E P V+ I ++I+ L D +KM LL DP+ Sbjct: 354 KYIQKIANTEIRKEEVPDVKDIIGAKKRKIVSGIKELLESGKYNDCEKMAAELLEDADPQ 413 Query: 415 KIAAGFLR-----------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463 ++ + L+ R G A E GRDR S + G R +F Sbjct: 414 EVLSAVLKYALKDELSESNYKRIGKPANRE--------GRDRGEGRSEGRRDRGEGRRSF 465 Query: 464 --KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 G+ +++G K + L+ + + S + + I ++V +FV VS+D +++ Sbjct: 466 VSGGNVRLFVALGKLDKMNPKKLVDHISKKSDVKGRDIDDVKVFEKFSFVTVSSDNAEII 525 Query: 522 RRTVKLDK 529 + K +K Sbjct: 526 LDSFKHEK 533 >gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus DSM 20745] Length = 526 Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 173/511 (33%), Positives = 261/511 (51%), Gaps = 31/511 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +Q + L +D++ AQTG+GKT AF L + L R Sbjct: 15 KAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIERLQPNGRR---- 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL +APTRELAVQV + L V GG + R+ R L++ +VVGTP Sbjct: 71 --PQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALRHPVEVVVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHIR + L++S++ VV+DEADEMLD+GF +D+E+ILD P +R+ +FSATI Sbjct: 129 GRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQTALFSATIPDR 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + LA+ Y +D RV + E I+ V V + A+ IL +AI+FC Sbjct: 189 VAALARRYLRDPARVAVEPERVTVPQIEQTYVEVVQRAKVEALTRILDMETPPSAIIFCR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V T+ L + AL G+LSQ +R + R G+A + IATDVAARG+D+ Sbjct: 249 TKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLIATDVAARGLDVEG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ +PE+ +HR GRTGRAGR G ++ ++ +R + R V + Sbjct: 309 ITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREIERATGVRMTRRGV 368 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEKIAAGFLRIHRAGL 428 P+ E + R QR L + I+ ++ + +VD L A +DP +IAA +R+ Sbjct: 369 PTPEEVAAR--QRELLGESLAEVIEANDLEAAMMVVDELAAYYDPSEIAAAAIRMLM--- 423 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 RDR + GGGS + G + L++G K ++ + Sbjct: 424 --------------RDRGVAEQEEIPTGGGSTE--AGMARLFLNLGRKDGIRPMDVVGAI 467 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 + I +SIG I + TFV+V VD Sbjct: 468 ANEARIPGKSIGQIEIMDRYTFVDVPEQVVD 498 >gi|313672966|ref|YP_004051077.1| dead/deah box helicase domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939722|gb|ADR18914.1| DEAD/DEAH box helicase domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 528 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 166/505 (32%), Positives = 267/505 (52%), Gaps = 29/505 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +ALS++G+ T +QE ++ L+ E+D++ AQTG+GKT AFGL L L D SP Sbjct: 18 KALSKKGFEEPTPIQELVIPKLLQGERDIVGQAQTGTGKTAAFGLPLIELL----DDKSP 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L K + + GG S+ + R L+N AHIVVGT Sbjct: 74 FVQ--AIVLTPTRELALQVAEEMNSLKGKKRLNIVPIYGGQSMELQLRRLENNAHIVVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI K L ++ LK +VLDEADEML++GF +DIE I+ + + +RML+FSAT+ Sbjct: 132 PGRVIDHINRKTLRLNKLKFMVLDEADEMLNMGFIEDIEEIIKHTNEDKRMLLFSATMPK 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +AK Y KD + + ++ + V D+ A+ I ++FC Sbjct: 192 EILNIAKKYMKDYEVLAVKTKQLTTELTEQIYFQVREEDKFEALCRIRDMEKEFYGLIFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L + + AL G++SQ +R L+ + + + +ATDVAARGID+ Sbjct: 252 RTKVDVDTVCNRLIDRGYNAEALHGDISQYQRERILKRFKAKQINMLVATDVAARGIDIS 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DL VI+ L +PE+ +HR GRTGRAG++G ++ FV P+ R+ + + A + + Sbjct: 312 DLTHVINYSLPQDPESYVHRIGRTGRAGKEGTAITFVTPEEY-RKLLYIMKIAKADIKKK 370 Query: 371 PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 PSV + + +RI + + D++ D ++ + LL ++DP KI A L+++ Sbjct: 371 KVPSVSEVIQAKKERIKDEVSDILSDNMSNDYFELANKLLEEYDPVKIVAALLKMNYKDD 430 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 + +S VS DR KG + +++G + + ++ + Sbjct: 431 FEAGSYSEISEVSNVDR------------------KGKARLFIAMGKLENMTPKKIVDFI 472 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513 +GI I ++V +F+ V Sbjct: 473 VDKTGIKESDIKEVKVFDKFSFISV 497 >gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] Length = 539 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 170/517 (32%), Positives = 266/517 (51%), Gaps = 34/517 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 I + I A+ + G+ + +QE + L DV+ AQTG+GKT AFG+ + Sbjct: 8 QISEPIKRAIKDMGFEEPSPIQEKAIPVILEGGDVIGQAQTGTGKTAAFGIPVI------ 61 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D+ + AL + PTRELA+QV EL+ L A + GG S+ + + L+ G Sbjct: 62 -DKVTEERYVQALILTPTRELAIQVSGELQKLSAHKRIRTMPIYGGQSIGHQIKALKQGV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+GTPGR+ DHIR K L ++ + +VLDEADEMLD+GF DDIE IL R+ L+F Sbjct: 121 QVVIGTPGRILDHIRRKTLQLNKVHTIVLDEADEMLDMGFVDDIESILREVKGARQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ PAI L++ Y V I ID V ++ +++ I+ Sbjct: 181 SATMPPAIKKLSRRYMTTPKTVTINKGEVTAPSIDQLYYKVLERNKIDSLCRIIDSEEVD 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+FC T+ V+ T+ L + L G+L+Q +R ++ RD IATDVAA Sbjct: 241 LGILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFLIATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ ++ VI+ ++ +PE+ +HR GRTGRAGRKG+++ ++ + + +E + Sbjct: 301 RGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEQEIKM 360 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDE----KKMVDVLLAKHDPEKIAAG 419 ++ + P++E + E+ Q+ L D+I G E K +V +LA H PE + A Sbjct: 361 AIPSQDVPTIEDVVEK--QQSSWKKLVHDTIDTGGKEFELFKPLVQEVLADHSPEDVVAA 418 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 L+++ + A EE +G + F GG+ KG F ++VG Sbjct: 419 LLKMNFSNDSAAEE-------AGYN--------FGETGGA----KGMVRFFINVGRNVNM 459 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + L+ + GI ++IG I + + TFVEV D Sbjct: 460 SPKILIEEISELVGIPGKAIGRIDIFENFTFVEVPED 496 >gi|159904844|ref|YP_001548506.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus maripaludis C6] gi|159886337|gb|ABX01274.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis C6] Length = 546 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 175/548 (31%), Positives = 288/548 (52%), Gaps = 34/548 (6%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56 M+ F+N+ I +AL ++G+ N T +QE + P L E +DV+ AQTG+GKT AFG+ Sbjct: 1 MESFKNLGLSDEIIKALEKKGFTNPTPIQEQAI-PILIEGKRDVVGQAQTGTGKTAAFGI 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 + T+ E R + A L +APTRELA+QV E++ + + + GG S+ R Sbjct: 60 PILETI-DEGSRNTQA-----LILAPTRELAIQVAEEIDSIKGSKRLNIFPVYGGQSIDR 113 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + R+L+ G IVVGTPGR+ DHI + + + ++ VVLDEADEML++GF DD+E IL S Sbjct: 114 QIRELKRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSV 173 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 ++RML+FSAT+ +I LAKNY ++ + + + + D + D+ + Sbjct: 174 STEKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLS 233 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 I+ ++FC T+A V + L E + L G+++Q +R L+ + + Sbjct: 234 RIIDVEKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLEKFKARKIN 293 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 V +ATDVAARGID+ DL V++ ++ NPE+ +HR GRTGRAG++G +V + + R+ Sbjct: 294 VLVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKF 353 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414 + + + AN + E P V+ I ++I+ + D +KM LL DP+ Sbjct: 354 KYIQKIANTEIRKEEVPDVKDIIGAKKRKIVSGIKEVLESGKYNDCEKMAAELLEDADPQ 413 Query: 415 KIAAGFLR-----------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463 ++ + L+ R G A E GRDR S + G R +F Sbjct: 414 EVLSAVLKYALKDELSESNYKRIGKPANRE--------GRDRGEGRSEGRRDRGEGRRSF 465 Query: 464 --KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 G+ +++G K + L+ + + S + + I ++V +FV VS+D +++ Sbjct: 466 VSGGNVRLFVALGKLDKMNPKKLVDHISKKSDVKGRDIDDVKVFEKFSFVTVSSDNAEII 525 Query: 522 RRTVKLDK 529 + K +K Sbjct: 526 LDSFKHEK 533 >gi|150003861|ref|YP_001298605.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482] gi|254880913|ref|ZP_05253623.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA] gi|294775017|ref|ZP_06740546.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510] gi|319639922|ref|ZP_07994650.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A] gi|149932285|gb|ABR38983.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482] gi|254833706|gb|EET14015.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA] gi|294451061|gb|EFG19532.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510] gi|317388461|gb|EFV69312.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A] Length = 624 Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 181/540 (33%), Positives = 283/540 (52%), Gaps = 40/540 (7%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFG 55 MK FE + P+++ +A+ E GY N VQE ++ P L DV+ AQTG+GKT AFG Sbjct: 1 MKTFEELGVSPEIL-KAIKEMGYENPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAFG 58 Query: 56 LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVS 113 L L + ++ AP AL + PTREL +Q+ +L Y+K G+ + GG S Sbjct: 59 LPLIQKVDVKH------RAPQALILCPTRELCLQIAGDLND-YSKYIDGLKILPVYGGSS 111 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + + R L+ G HI+V TPGRL D I K + + VV+DEADEML++GF D I IL Sbjct: 112 IESQIRMLKTGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAIL 171 Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 + P+ R LMFSAT+SP I+ +AK Y DA + I ++N ++++ A LV D+ Sbjct: 172 EKVPEDRNTLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYA 231 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 A+ I Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 232 ALKRIADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQR 291 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G+S+ +I + Sbjct: 292 HLQLLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREK 351 Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------ 407 + + R N + PS + I E+ +++ D ++ ++ +++++ L Sbjct: 352 GKMREIERIINKKFIMGEMPSGKQICEQQLIKLIDD---IEKVKVNDEEIESFLPGIYRK 408 Query: 408 ---LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRD 461 L+K D K ++ F R APE + + S DR + S+ K G +R+ Sbjct: 409 LEWLSKEDLIKRVVSMEFNRFLEYYSNAPE----IEIPSTNDRRSERGSKERKDHGSARE 464 Query: 462 NF-----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 KG + L+VG A ++ ++ R+ R +IG I + + +F EV+ + Sbjct: 465 KTERKAEKGYTRLFLNVGKTDGFYANQIIELINRNMKKQRTTIGRIDLMQNFSFFEVAEN 524 >gi|134046209|ref|YP_001097694.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus maripaludis C5] gi|132663834|gb|ABO35480.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis C5] Length = 541 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 171/543 (31%), Positives = 281/543 (51%), Gaps = 29/543 (5%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56 M+ F+N+ I EAL ++G+ T +QE + P L E +D++ AQTG+GKT AFG+ Sbjct: 1 MESFKNLGLSDEILEALEKKGFTTPTPIQEQAI-PILIEGKRDIVGQAQTGTGKTAAFGI 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 + T+ E+ R + A L +APTRELA+QV E++ + + V GG S+ R Sbjct: 60 PILETI-DESSRNTQA-----LILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDR 113 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + R+L+ G IVVGTPGR+ DHI + + + ++ VVLDEADEML++GF DD+E IL S Sbjct: 114 QIRELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSV 173 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 ++RML+FSAT+ +I LAKNY ++ + + + + D + D+ + Sbjct: 174 STEKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLS 233 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 I+ ++FC T+A V + L E + L G+++Q +R L + + Sbjct: 234 RIIDLEKEFYGLIFCKTKADVDEVSSRLNEKGYAAEGLHGDMTQAQREKTLDKFKGRKIN 293 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 V +ATDVAARGID+ DL V++ ++ NPE+ +HR GRTGRAG++G +V + + R+ Sbjct: 294 VLVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKF 353 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414 + + + A + E P V+ I ++I+ + D + M LL DP+ Sbjct: 354 KYIQKIAKTEIRKEEVPDVKDIIGAKKRKIVSGIKEVLESGKYNDCENMAADLLEDADPQ 413 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS--------RAFKVGGGSRDNFKGS 466 ++ + L+ + + S R RD S R+F GG R Sbjct: 414 EVLSAVLKYALKDELSESNYKKIGRNSQRSEGRDRSGRSEGRGRRSFVAGGNVR------ 467 Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 +++G K + L+ + R S + + I ++V +FV VS+D + + + K Sbjct: 468 --LFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSDDAERILDSFK 525 Query: 527 LDK 529 +K Sbjct: 526 HEK 528 >gi|122227760|sp|Q0ILZ4|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9 Length = 628 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 224/372 (60%), Gaps = 12/372 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + L+ RG L +Q A+L P ++ KD++ A+TG+GKT+AFG+ + ++ N+ Sbjct: 107 PKIVSQ-LASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 + SP PLA+ +APTRELA QV RE ++ + V +C+ GG + ++ R L G Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVERE----FSDSSNVETICVYGGTPISQQIRQLNYGVD 221 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V+GTPGR+ D ++ LN+S ++ VVLDEAD+ML +GF +D+E ILD P KR+ LMFS Sbjct: 222 VVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFS 281 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243 AT+ I L + Y K+ V +++ E+ Q I ++ + + +++ H Sbjct: 282 ATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAK 341 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ R + + FQ AL G+++Q +R L+ R+G + IATDV Sbjct: 342 GGKCIVFTQTKRDADRLSYTMGRS-FQCQALHGDITQAQRERTLKGFREGHFNILIATDV 400 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++LVIH EL ++ E +HRSGRTGRAG+KG ++ V+ Q RA R+ E Sbjct: 401 AARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAI-VMHSYQQSRAIRMV-EN 458 Query: 364 NVSVVWEPAPSV 375 +V + P + Sbjct: 459 DVGCKFTELPKI 470 >gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group] Length = 630 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 224/372 (60%), Gaps = 12/372 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + L+ RG L +Q A+L P ++ KD++ A+TG+GKT+AFG+ + ++ N+ Sbjct: 107 PKIVSQ-LASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 + SP PLA+ +APTRELA QV RE ++ + V +C+ GG + ++ R L G Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVERE----FSDSSNVETICVYGGTPISQQIRQLNYGVD 221 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V+GTPGR+ D ++ LN+S ++ VVLDEAD+ML +GF +D+E ILD P KR+ LMFS Sbjct: 222 VVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFS 281 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243 AT+ I L + Y K+ V +++ E+ Q I ++ + + +++ H Sbjct: 282 ATMPTWIRRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAK 341 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ R + + FQ AL G+++Q +R L+ R+G + IATDV Sbjct: 342 GGKCIVFTQTKRDADRLSYTMGRS-FQCQALHGDITQAQRERTLKGFREGHFNILIATDV 400 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++LVIH EL ++ E +HRSGRTGRAG+KG ++ V+ Q RA R+ E Sbjct: 401 AARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAI-VMHSYQQSRAIRMV-EN 458 Query: 364 NVSVVWEPAPSV 375 +V + P + Sbjct: 459 DVGCKFTELPKI 470 >gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group] Length = 676 Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 224/372 (60%), Gaps = 12/372 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + L+ RG L +Q A+L P ++ KD++ A+TG+GKT+AFG+ + ++ N+ Sbjct: 155 PKIVSQ-LASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 213 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 + SP PLA+ +APTRELA QV RE ++ + V +C+ GG + ++ R L G Sbjct: 214 KNSPGKFPLAIVLAPTRELAKQVERE----FSDSSNVETICVYGGTPISQQIRQLNYGVD 269 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V+GTPGR+ D ++ LN+S ++ VVLDEAD+ML +GF +D+E ILD P KR+ LMFS Sbjct: 270 VVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFS 329 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243 AT+ I L + Y K+ V +++ E+ Q I ++ + + +++ H Sbjct: 330 ATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAK 389 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ R + + FQ AL G+++Q +R L+ R+G + IATDV Sbjct: 390 GGKCIVFTQTKRDADRLSYTMGRS-FQCQALHGDITQAQRERTLKGFREGHFNILIATDV 448 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++LVIH EL ++ E +HRSGRTGRAG+KG ++ V+ Q RA R+ E Sbjct: 449 AARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAI-VMHSYQQSRAIRMV-EN 506 Query: 364 NVSVVWEPAPSV 375 +V + P + Sbjct: 507 DVGCKFTELPKI 518 >gi|212692656|ref|ZP_03300784.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855] gi|237709374|ref|ZP_04539855.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA] gi|237725060|ref|ZP_04555541.1| ATP-dependent RNA helicase [Bacteroides sp. D4] gi|265754557|ref|ZP_06089609.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA] gi|212664734|gb|EEB25306.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855] gi|229436798|gb|EEO46875.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4] gi|229456430|gb|EEO62151.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA] gi|263234671|gb|EEZ20239.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA] Length = 624 Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 181/540 (33%), Positives = 281/540 (52%), Gaps = 40/540 (7%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFG 55 MK FE + P+++ +A+ E GY N VQE ++ P L DV+ AQTG+GKT AFG Sbjct: 1 MKTFEELGVSPEIL-KAIKEMGYENPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAFG 58 Query: 56 LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVS 113 L L + + P AL + PTREL +Q+ +L Y+K G+ V GG S Sbjct: 59 LPLIQKIEVKK------RVPQALILCPTRELCLQIAGDLND-YSKYIDGLKVLPVYGGSS 111 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + + R L+ G HI+V TPGRL D + K + + VV+DEADEML++GF D I IL Sbjct: 112 IESQIRMLKAGVHIIVATPGRLIDLMERKVAKLETIADVVMDEADEMLNMGFTDSINAIL 171 Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 + P+ R LMFSAT+SP I+ +AK Y DA + I ++N ++++ A LV D+ Sbjct: 172 EKVPEDRNTLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYA 231 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 A+ I Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 232 ALKRIADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQR 291 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G+S+ +I + Sbjct: 292 HLQLLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREK 351 Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------ 407 + + R N + PS + I E+ +++ D ++ ++ +++++ L Sbjct: 352 GKMREIERIINKKFIMGEMPSGKQICEQQLIKLIDD---IEKVKVNDEEIESFLPGIYRK 408 Query: 408 ---LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRD 461 L+K D K ++ F R APE TP S DR + + + K G +R+ Sbjct: 409 LEWLSKEDLIKRVVSMEFNRFLEYYSNAPEIETP----SMNDRRSEREPKGRKDHGSARE 464 Query: 462 NF-----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 KG + L+VG A ++ ++ R+ R +IG I + + +F EV+ + Sbjct: 465 KTERKAEKGYTRLFLNVGKTDGFYANQIIELINRNMKKQRTTIGRIDLMQNFSFFEVAEN 524 >gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] Length = 529 Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 170/521 (32%), Positives = 270/521 (51%), Gaps = 29/521 (5%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M IF + P + I +A+ + G+ + +Q A + L D++ AQTG+GKT AFG+ L Sbjct: 1 MTIFSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 ++ +PA+ A+ + PTRELA+QV EL + V GG S+ + Sbjct: 61 V-------EKITPANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQI 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L+ G IVVGTPGR+ DH+R K L + H+ +VLDEADEMLD+GF +DIE I++ P Sbjct: 114 RALRQGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIINHMPD 173 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ P I LA Y K + ++ E I+ V ++ ++ I Sbjct: 174 ERQTLLFSATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFDRNKVESLCRI 233 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + I+FC T+ V ++VL + L G+LSQ +R + R+G Sbjct: 234 LDSEDVELGIIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFL 293 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 IATDVAARGID+ ++ VI+ ++ + E+ +HR GRTGRAGRKG+++ ++ R+ Sbjct: 294 IATDVAARGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMF 353 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415 + ++ V+ PS+E + ER +++ L L D+I +K+ D L+ ++ EK Sbjct: 354 IQKQTKAQVLSRNVPSLEEVAERKQEQLREQLTSLLESDAIADMYQKVADALVGQYPAEK 413 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 +AA L + + ++ A+ G KG F L+VG Sbjct: 414 VAAAALHLAFHTEAGQGQ---------------EAEAYNFG--ETGAAKGMVRFFLNVGR 456 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + + L+ + S GI +S+G I + TFVEV + Sbjct: 457 NANMKPQDLVREISESVGIPGKSVGRIDIFESFTFVEVPEE 497 >gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16] gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16] Length = 537 Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 165/517 (31%), Positives = 266/517 (51%), Gaps = 34/517 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I + +A+ + G+ + +QE + L DV+ AQTG+GKT AFG+ + Sbjct: 8 DISDQVKQAIQDMGFEEPSPIQEKAIPAILTGGDVIGQAQTGTGKTAAFGIPVV------ 61 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D+ + AL + PTRELA+QV EL+ L A + GG S+ + + L+ G Sbjct: 62 -DKVTEERYIQALILTPTRELAIQVSGELQKLSAHKRIRTLPIYGGQSIGHQIKALRQGV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+GTPGR+ DH+R L ++ + VVLDEADEMLD+GF DDIE IL + R+ L+F Sbjct: 121 QVVIGTPGRMLDHLRRGTLKLNSVHTVVLDEADEMLDMGFVDDIEAILKEVNQVRQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ PAI L++ Y D V I I+ V ++ +++ I+ + Sbjct: 181 SATMPPAIRKLSRKYMNDPKTVTINKGEVTAPSINQVYYKVLERNKIDSLCRIIDSDDVE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+FC T+ V+ T+ L + V L G+L+Q +R ++ RD IATDVAA Sbjct: 241 LGILFCRTKKGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKFRDSSIEFLIATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ ++ VI+ ++ +PE+ +HR GRTGRAGR G ++ ++ + + +E + Sbjct: 301 RGIDVENVTHVINYDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMKHLRSIEKEIKM 360 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM------VDVLLAKHDPEKIAAG 419 + P++E + E+ Q+ L D+I+ K+M VD +LA+ DP+++ A Sbjct: 361 HIPSASVPTIEEVVEK--QQSSWKNLIQDTIEQGGKEMELFLPLVDEILAEQDPKQVVAA 418 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 L++ + A E D +F GG+ KG F ++VG Sbjct: 419 LLKLKFSTETATE---------------DAGYSFGDTGGA----KGMVRFFINVGRNVNL 459 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + L + R GI +SIG I + + +FV+V + Sbjct: 460 TPKILGEEIGRLVGIPVKSIGRIDIFENFSFVDVPEE 496 >gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125] gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125] Length = 539 Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 166/523 (31%), Positives = 267/523 (51%), Gaps = 46/523 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 I + I +A+ E G+ + +Q + L DV+ AQTG+GKT AFG+ + Sbjct: 12 QIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVV------ 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ S AL + PTRELA+QV E++ L + GG S+ + + L+ G Sbjct: 66 -EKVSTGRHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIKALKQGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+GTPGR+ DH+R K L + H+ V+LDEADEMLD+GF DDIE IL +R+ L+F Sbjct: 125 QVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNERQTLLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ PAI L++ Y D V+I ID V ++ +++ I+ Sbjct: 185 SATMPPAIKKLSRKYMNDPQTVSINRREVTAPSIDQFYYKVLERNKLDSLCRIIDSEQID 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+FC T+ V+ T+ L + L G+L+Q +R ++ RD IATDVAA Sbjct: 245 LGILFCRTKKGVAELTEALQARGYIADGLHGDLTQSQRDAVMRKFRDSSIEFLIATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ ++ VI+ ++ +PE+ +HR GRTGRAGRKG+++ ++ + + +E + Sbjct: 305 RGIDVGNVSHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEQEIKM 364 Query: 366 SVVWEPAPSVEAIRERD--------AQRIL----QDPLFLDSIQGDEKKMVDVLLAKHDP 413 S+ + P++E + E+ A RI Q LF ++M + L+A++D Sbjct: 365 SIPSQEVPTIEDVVEKQKESWKKQIAHRIEKGSNQKHLF--------EQMTEELMAEYDS 416 Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 +++ + L+++ A APE D +F GG+ KG F ++V Sbjct: 417 KEVISALLQLNYAMDTAPE---------------DAGYSFGETGGA----KGMVRFFINV 457 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 G + L+ + GI ++IG I + TFVEV + Sbjct: 458 GRNVNMSPKILVEEIAELVGIPGKAIGRIDIFEKFTFVEVPEE 500 >gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 614 Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 135/344 (39%), Positives = 209/344 (60%), Gaps = 9/344 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ +G L +Q+A+L P ++ KD++ A+TG+GKT+AFG+ + ++ N+ P Sbjct: 120 LAAKGITKLFPIQKAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIMDAIIRHNEINKPGRL 179 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133 PLA+ +APTRELA QV +E + + + +C+ GG + ++ R L G +VVGTPG Sbjct: 180 PLAICLAPTRELAKQVDKE----FVDSSPLQTLCVYGGTPIQQQMRALDYGVDVVVGTPG 235 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D ++ LN+S ++ VVLDEAD+ML +GF +D+E IL+ P KR+ LMFSAT+ P I Sbjct: 236 RVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEDVEIILNKVPPKRQTLMFSATMPPWI 295 Query: 194 TTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-AKNAIVF 250 L + Y KD V V++ E+ Q I ++ + + +++ H IVF Sbjct: 296 RKLMQKYLKDPVIVDLVGEDDQKLAEGISLLSIATENHAKPAVLAQLIQDHAKGGKCIVF 355 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ R + + + Q AL G+++Q +R LQ R+GR IATDVAARG+D+ Sbjct: 356 TQTKRDADRLSYTMGRTV-QCQALHGDITQGQRERTLQGFREGRFSTLIATDVAARGLDI 414 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 P+++LVIH EL +N E +HRSGRTGRAG+KG+++ + N R Sbjct: 415 PNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGIAIVMYGYNQSR 458 >gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans DSM 574] gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans DSM 574] Length = 532 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 176/520 (33%), Positives = 261/520 (50%), Gaps = 28/520 (5%) Query: 2 KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F N+ I + L + G+ T +Q+ + L D++ AQTG+GKT AFG+ L Sbjct: 8 KFFGNLELDSCIVQGLVDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTAAFGIPLV 67 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + L N R A+ I PTRELA+QVG E+ + V GG S+ R+ R Sbjct: 68 ARL---NFR---KRGVQAIIITPTRELAIQVGEEINKIGRYRRARVLPIYGGQSIERQIR 121 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G H+VVGTPGRL DH+R + L + + VVLDEADEMLD+GF DDIE IL +P + Sbjct: 122 SLRQGVHVVVGTPGRLLDHLRRQTLKLDQVSMVVLDEADEMLDMGFIDDIEEILRHTPPE 181 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I+ LA+ Y D V ++ N I+ + A+ IL Sbjct: 182 RQTLLFSATMPEEISRLARQYMTDPKFVTVSKANITAPSIEQIYYEAPEKHKLEALCRIL 241 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 IVFC T+ V L + V+L G+LSQQ+R+ ++ R G + + Sbjct: 242 DTTEITQGIVFCRTKRGVDELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLV 301 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARG+D+ + VI+ ++ +PE +HR GRTGRAGR G+++ +I R+ + Sbjct: 302 ATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPREYRQLRLI 361 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEKI 416 + PS+ + ER + I +D L +G + +VD L ++DP I Sbjct: 362 ENLTKTRIKRGRLPSIADVAERQREGI-KDRLVQIIEEGKLAYYRSVVDPLTDEYDPIDI 420 Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476 AA L+I ++ P +G D D V G G L++G K Sbjct: 421 AAAALKISL-------DLEP----AGEDIDLD-----TVNFGDTGARPGMVRLFLTLGRK 464 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + ++ + SGI IG+I + + +FVEV D Sbjct: 465 DQTSPAEIVKLFSEESGIPGSKIGSINIYENFSFVEVPED 504 >gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L] gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L] Length = 547 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 172/532 (32%), Positives = 273/532 (51%), Gaps = 31/532 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + + I A+++ GY + +Q + L DV+ AQTG+GKT AF + L + + Sbjct: 11 VKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLEKIDPSD 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124 R A+ + PTRELA+QV E+ L AK GV GG + R+ + L+ G Sbjct: 71 KRLQ------AIVLCPTRELAIQVSEEVRKL-AKYLHGVKTLPIYGGQPIDRQIKALKGG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +++GTPGR+ DHI K L S +K VV+DEADEMLD+GFR+DIE IL S+P++R+ + Sbjct: 124 VQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSSTPQERQTSL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ AI L + YQK+ V + + + ++I + S++ + ++ + Sbjct: 184 FSATMPKAILELTQKYQKEPVHIKVVRKELTVNNIKQFYIETRKSNKLEVLTRLIDVYNP 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K +VF +T+ L + +L G+L Q +R + R G + +ATDVA Sbjct: 244 KLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARGID+ D+E VI+ EL + E +HR GRTGRAGR G++ FV + M R+ + + R Sbjct: 304 ARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGIAFSFVFGREM-RKLKDIERYT 362 Query: 364 NVSVVWEPAPSVEAIRER-------DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE-- 414 V+ P+V + ++ D + L++ F +Q V+ L + D Sbjct: 363 KSKVMKHSIPTVNDVEQKKIGQFFSDIKETLEEGNFSKQLQ-----WVEDFLNEEDYSLI 417 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474 I A L+ + G EEI S R R ++ R GG R N + + L+VG Sbjct: 418 DICAAMLK-NSLGADEKEEIKEESYYDSR-RNKNGGR----NGGPRRNDENMTRLFLNVG 471 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 QK +A+ ++ + +GIN + IG I + TFV+V + ++ +K Sbjct: 472 RNQKIQAKDILGAIAGETGINSKYIGTIDIYDKYTFVDVDQNKAKMVIEKMK 523 >gi|291280174|ref|YP_003497009.1| ATP-dependent RNA helicase DEAD/DEAH box family [Deferribacter desulfuricans SSM1] gi|290754876|dbj|BAI81253.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Deferribacter desulfuricans SSM1] Length = 525 Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 161/452 (35%), Positives = 241/452 (53%), Gaps = 23/452 (5%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQE----AILNPDLREKDVLVSAQTGSGKTVAF 54 MK FE + + I EAL ++G+ T +Q+ ILN D KD++ AQTG+GKT AF Sbjct: 4 MKEFEKLGVSKSILEALKKKGFEEPTDIQKLVIPKILNSD---KDIVAQAQTGTGKTAAF 60 Query: 55 GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114 G+ L + DR S L + PTRELA QV E+ L + + + GG S+ Sbjct: 61 GIPLIEMI----DR--KKSGVKCLILTPTRELANQVAEEINSLKGRRKLKIVPVYGGQSM 114 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + L+ GA IVVGTPGR+ DH++ K L+IS + +LDEADEML++GF DDI+ I Sbjct: 115 ELQLKRLKEGADIVVGTPGRILDHLKRKSLDISKIDFFILDEADEMLNMGFIDDIKTIFR 174 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 +P+ RR+L+FSAT+ I LAK + KD + + ++ S + V D+ A Sbjct: 175 YTPENRRVLLFSATMPREILNLAKTFMKDYELIKVDAKQLTTSLTEQIYFEVREEDKFEA 234 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I + ++FC T+ V L + + L G+LSQ +R L + R Sbjct: 235 LCRIRDMYPEFYGLIFCRTKVDVDTVANKLIDRGYNAEGLHGDLSQYQRERILHKFKTKR 294 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + +ATDVAARGID+ +L VI+ L NPE+ +HR GRTGRAG+KG+++ + + R Sbjct: 295 INMLVATDVAARGIDIDNLTHVINYSLPQNPESYVHRIGRTGRAGKKGIAITFVTPSEYR 354 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI--QGDEKKMVDV---LLA 409 + R +N + E P VE I E + I+ D L ++ + K +D LL+ Sbjct: 355 NLLYIMRISNTEIKKEKLPDVEEIIENKKKHIIDD---LKAVVENKEHKDYLDFAKELLS 411 Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVS 441 +PE I A LR A + E + + V+ Sbjct: 412 VGNPEDIVAAMLRYRFADDLSSESYSDIEEVT 443 >gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 526 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 162/512 (31%), Positives = 267/512 (52%), Gaps = 39/512 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + G+ + +Q + L+ KDV+ AQTG+GKT AFG+ + +R P Sbjct: 19 KALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIV-------ERLVPG 71 Query: 73 S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA+QV E+ + V GG S+ R+ R L+ G +V+GT Sbjct: 72 QRAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIRSLRFGVDVVIGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S ++ VVLDEADEMLD+GF +DIE IL ++P +R+ L+FSAT+ P Sbjct: 132 PGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQTLLFSATMPP 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA Y +D + +++ + ID V S + A+ IL + I FC Sbjct: 192 EIRRLAGRYMRDPITISVTPQQLTVPQIDQYFCEVRPSFKTEALTRILDIENVERGICFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + L +Q + G+++Q +R+ + ++G + +ATDVAARG+D+ Sbjct: 252 RTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLVATDVAARGLDIS 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVV 368 D+ V + ++ +PE+ +HR GRTGRAGR G ++ V P+ R ER+ + + Sbjct: 312 DVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQLRLIERVIK---ARLQ 368 Query: 369 WEPAPSV----EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424 P P++ E RE+ +R+++ + + G+ +++ + LLA++DP + A L+ Sbjct: 369 RRPVPTLSDVAEKQREQLKERLIK--ILEEDKLGEFRELAEDLLAEYDPSDLVAAALK-- 424 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 LVSG + ++ ++ G G L+VG Q + + Sbjct: 425 --------------LVSGEGK---PAQQAQMEFGDTGAEAGMVRLFLNVGRAQAIQPADI 467 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + + + + I SIG I + TFVEV + Sbjct: 468 VRTIAQEANIPGSSIGIINIYDRFTFVEVPKE 499 >gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] Length = 492 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 214/369 (57%), Gaps = 4/369 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 ++ + + A++E GY +T +QE + L+ KDV+ +AQTG+GKT AF L L +L Sbjct: 9 SLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPLLQRMLKH 68 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122 EN SPA P+ AL + PTRELAVQV +++ LYAK T + AV GG+ + + +L+ Sbjct: 69 ENASTSPARHPVRALVLLPTRELAVQVAEQVK-LYAKHTNLRSAVVFGGMDMKPQTLELK 127 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G ++V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+R Sbjct: 128 QGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRIT 187 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT SP I LA +Y +D V + +A N S ++ V D+ A+ IL+ Sbjct: 188 LLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRRALHQILKER 247 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G K A VF +++ +R + L + AL G+ SQ ER AL + G + + TD Sbjct: 248 GMKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEVDLLVCTD 307 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ D+ V + ++ N E+ +HR GRTGRAG G++V + + QR + + Sbjct: 308 VAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVASSDQRLVADIEKL 367 Query: 363 ANVSVVWEP 371 + EP Sbjct: 368 IKTKIELEP 376 >gi|301154834|emb|CBW14297.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1] Length = 616 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 181/555 (32%), Positives = 286/555 (51%), Gaps = 29/555 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q+A + L +DVL AQTGSGKT AF L + + Sbjct: 12 LPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPILA------ 65 Query: 67 DRFSPASA-PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + PA+ P L +APTRELA+QV E YAK G+ + GG + R L+ Sbjct: 66 -KIDPAAKHPQLLVMAPTRELAIQVADACEHFMKYAK-GINIVTLYGGQRYDIQLRALKQ 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DHIR L++S LKA+VLDEADEML +GF DD+E ++ P++ + Sbjct: 124 GAQVVVGTPGRILDHIRRNTLDLSELKAIVLDEADEMLRMGFIDDVETVMAELPEEHQTA 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + K + + V I N DI+ V +++A++ L Sbjct: 184 LFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCWYVQGFRKNDALLRFLEVED 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+F T+ T++L +H F+ AL+G+++QQ R L +R+G + +ATDV Sbjct: 244 FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIVVATDV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLF 360 AARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L Sbjct: 304 AARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLM 363 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 ++ V ++A R + Q + L ++ + D+ A D E IAA Sbjct: 364 KKPINEVELPNHEVLQACRRKKFQDKITKQLEHHDLEMYRSLLEDLFTADQDQEDIAAAM 423 Query: 421 LRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLS 472 L + + L P + P+ R D R R KG + + Sbjct: 424 LMLLQGKQKLILPPD-PPMDKRRRDRNDRGDRRENPRSAERRGERKGYGTPQPMDLYRIE 482 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKL 527 VG E R ++ + IN + IG I++ D + VE+ G+ +LL+ +T L Sbjct: 483 VGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTVELPQ-GMPKELLQQFGKTRVL 541 Query: 528 DKGIQLKYLGGEKPD 542 +K +Q+ ++G + D Sbjct: 542 NKQMQMSFMGAVQSD 556 >gi|325577637|ref|ZP_08147912.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC 33392] gi|325160382|gb|EGC72508.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC 33392] Length = 612 Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 188/581 (32%), Positives = 294/581 (50%), Gaps = 32/581 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q+A + L +DVL AQTGSGKT AF L L + Sbjct: 12 LPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPLLA------ 65 Query: 67 DRFSPASA-PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + PA+ P L +APTRELA+QV E YAK G+ + GG + R L+ Sbjct: 66 -KIDPAAKHPQLLVMAPTRELAIQVADACEHFMKYAK-GINIVTLYGGQRYDIQLRALKQ 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DHI LN+S LKA+VLDEADEML +GF DD+E ++ P++ + Sbjct: 124 GAQVVVGTPGRILDHIHRNTLNLSELKAIVLDEADEMLRMGFIDDVETVMAELPEEHQTA 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + K + + V I N DI+ V ++ A++ L Sbjct: 184 LFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCWYVQGFRKNEALLRFLEVEE 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+F T+ T++L +H F+ AL+G+++QQ R L +R+G + +ATDV Sbjct: 244 FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIVVATDV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLF 360 AARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L Sbjct: 304 AARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLM 363 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 ++ V ++A R + Q + L ++ + D+ A D E IAA Sbjct: 364 KKPINEVELPNHEVLQACRRKKFQDKITKQLEHHDLEMYRSLLEDLFTADQDQEDIAAAM 423 Query: 421 LRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLS 472 L + + L P + P+ R D R R KG + + Sbjct: 424 LMLLQGKQKLILPPD-PPMDKRRRDRNDRGDRRENPRSAERRGERKGYGTPQPMDLYRIE 482 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKL 527 VG E R ++ + IN + IG I++ + + VE+ G+ +LL+ +T L Sbjct: 483 VGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDEYSTVELPQ-GMPKELLQQFGKTRVL 541 Query: 528 DKGIQLKYLGGEKPDFR--GYKSSGFKSKNSQ-DGATKRFK 565 +K +Q+ ++G + D R G G +N + D RF+ Sbjct: 542 NKQMQMSFMGAAQSDNRRSGNDFGGKGRRNERGDRGQDRFR 582 >gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum DSM 5476] gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum DSM 5476] Length = 563 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 180/578 (31%), Positives = 302/578 (52%), Gaps = 46/578 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64 N+ G+A+ G+ N T +Q + P +R DV+ +QTG+GKTVAFG+ + Sbjct: 10 NLSDETGQAIEAMGFDNATDIQAQSI-PLIRAGYDVIGRSQTGTGKTVAFGVPAVELIDT 68 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQN 123 E R + L + PTRELAVQ E+E + K GV GG + R+ L+ Sbjct: 69 EELR----NKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMRLKR 124 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA+IVVGTPGR+ DH+R + L + HLK ++LDEADEML++GFR+D+E IL +P +R+ + Sbjct: 125 GANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTI 184 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ PAI L K YQKD + I + +I+ + V + + +A+ IL+YH Sbjct: 185 LFSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIILQYHD 244 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +I+FC+T+ V T L + L G++ Q +R+ + + GR ++ +ATDV Sbjct: 245 PALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDV 304 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF--- 360 AARGID+ +++ VI+ ++ N E +HR GRTGRAG++G +V + + +R+ + L+ Sbjct: 305 AARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTIC--SGRRQVDELYHIV 362 Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAK-HDPEKIA 417 R ++ E PS + I R + ++ + + + K++ + L+ K ++P IA Sbjct: 363 RMTKSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKGYNPTTIA 422 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-GGSRDNFKGSSWFSLSVGSK 476 A L + P+ P +FR K G G R +F+ +++G + Sbjct: 423 AVALEM---AFGRPKTDFPEI-----KQFRP-----KAGLQGPRGSFR---KIEINIGRE 466 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG------ 530 ++ + S ++ + IG I + D T V + ++ TVK G Sbjct: 467 NHIAPNHIVGAITERSDLSGRDIGKIEIYDDKTIVAIPDSQIE---STVKAMDGCKICGK 523 Query: 531 --IQLKYLGGE---KPDFRGYKSSGFKSKNSQDGATKR 563 + + GG+ +PD+R + G++ +N++ T R Sbjct: 524 PTVTVALKGGDTAKRPDYRPGGNRGYRPRNNRKPRTSR 561 >gi|229826321|ref|ZP_04452390.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC 49176] gi|229789191|gb|EEP25305.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC 49176] Length = 522 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 166/516 (32%), Positives = 272/516 (52%), Gaps = 37/516 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E GY T +Q + + +D+L AQTG+GKT AF + + + + + N Sbjct: 7 ILKAVKELGYEEATPIQTEAIPVAITGRDILGQAQTGTGKTAAFSIPILNNIDSGNKHLQ 66 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ + PTRELA+QV E+ L G+ + GG + ++ + L+ GA I+V Sbjct: 67 ------AVVLCPTRELALQVCGEIRKLSRYMHGIKLVPVYGGQDIVKQIKSLKQGAQIIV 120 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+R K + +K +VLDEADEMLD+GFRDDIE IL P++R+ ++FSAT+ Sbjct: 121 GTPGRVMDHMRRKTVKFDQVKIMVLDEADEMLDMGFRDDIETILAEVPEERQTMLFSATM 180 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I + + YQK A + IA + +I+ V + +D + IL + + +IV Sbjct: 181 PKPILDITRKYQKKAQNIKIAKKELTVENIEQYYYEVRRNYKDEILSRILDMYNPELSIV 240 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V L + L G+L QQ+R + R+G+ + +ATDVAARGID Sbjct: 241 FCNTKKKVEEVANELQGRGYFAEGLHGDLKQQQRDRVMGNFRNGKTEILVATDVAARGID 300 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + ++LVI+ +L + E +HR GRTGRAG+ G+++ + + + + R + + Sbjct: 301 VKGVDLVINYDLPQDDEYYVHRIGRTGRAGKAGLALSFVSGKEVYKLKEIQRYCHTKIRL 360 Query: 370 EPAPSVEAIRERDAQRILQDPLF--LDSIQGDE--KKMVDVLLAKHDPE-----KIAAGF 420 +P PS++ D D LF L I +E KM +++ K + E +AA F Sbjct: 361 KPVPSLD-----DVTNTRVDSLFDELSEIIENEDLTKMTELIEQKVNEEDFTSLDVAAAF 415 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 L+++ L + E +G D DS GS ++ G +++G K + + Sbjct: 416 LKLY---LSSKES-------NGEDNSELDSEF----TGSTES--GMVRLFINIGKKDRVK 459 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ + SGI+ + +G I++ TFVEV A+ Sbjct: 460 PGDILGAIAGESGISGKLVGEIQMYDKYTFVEVPAE 495 >gi|68248840|ref|YP_247952.1| cold-shock DEAD-box protein A-like protein [Haemophilus influenzae 86-028NP] gi|68057039|gb|AAX87292.1| Cold-shock DEAD-box protein A homolog [Haemophilus influenzae 86-028NP] Length = 613 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 193/585 (32%), Positives = 291/585 (49%), Gaps = 42/585 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q+A + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQACIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAH-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTV 525 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL++ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFA 536 Query: 526 K---LDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 K L+K +Q+ +LG K D RG S F K G R +R Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|145635138|ref|ZP_01790843.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA] gi|145267559|gb|EDK07558.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA] Length = 613 Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 192/585 (32%), Positives = 292/585 (49%), Gaps = 42/585 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQEYRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTV 525 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL++ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFA 536 Query: 526 K---LDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 K L+K +Q+ +LG K D RG S F K G R +R Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|219870715|ref|YP_002475090.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis SH0165] gi|219690919|gb|ACL32142.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis SH0165] Length = 603 Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 175/551 (31%), Positives = 286/551 (51%), Gaps = 31/551 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +++E G+V + +Q+A + L +DVL AQTGSGKT AF L L + + E Sbjct: 13 LPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLAQIDPEQ 72 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 P L +APTRELA+QV E G+ GG + R L+NGA Sbjct: 73 ------RHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIRALKNGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S LKA+VLDEADEML +GF +D+E ++ P+ + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPEDHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + K + KD V I + R DI LV +++A++ L Sbjct: 187 SATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ ++ + ++ AL+G+++QQ R AL+ ++ GR V +ATDVAA Sbjct: 247 AAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVIVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362 RGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + + E L ++ Sbjct: 307 RGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKNIEHLIKK 366 Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 V P P+ E + E+ ++ + L ++ + + D+ A D E++AA Sbjct: 367 PIDEV---PVPNHEILMEKRREKFKARISLQLEHHDLELYRELLEDLFTADQDHEELAAA 423 Query: 420 FLRI--HRAGLCAP--EEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFSL 471 + + + L P EI P + R + R++ R+ + GG R+ N + + Sbjct: 424 MMMLLQEKQKLILPPDPEIRPSR--AERGKGRENPRSAERRGGGREHRDNNGVAMDLYRI 481 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVK 526 +G + E R ++ + IN + IG I++ + +E+ L ++ Sbjct: 482 ELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKARV 541 Query: 527 LDKGIQLKYLG 537 L K +Q+ +LG Sbjct: 542 LSKPMQMSFLG 552 >gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus selenitireducens MLS10] gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens MLS10] Length = 528 Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 156/524 (29%), Positives = 270/524 (51%), Gaps = 35/524 (6%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE NI + + A+ E G+ + +QE ++ L D++ AQTG+GKT AFG+ + Sbjct: 1 MMTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPI 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 ++ A+ + PTRELA+QV E++ L V GG S+ ++ Sbjct: 61 L-------EKLKRTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQI 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ G IVVGTPGR+ DH+ K L++S + VLDEADEMLD+GF +DIE I+ S + Sbjct: 114 KQLKRGVDIVVGTPGRVLDHVNRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSE 173 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ P I L+ Y +V I+ I+ V ++ +++ + Sbjct: 174 ERQTLLFSATMPPPIRKLSNKYMNSPEQVTISKSEVTAPSINQVYYKVLEKNKLDSLCRL 233 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + I+FC T+ VS + L ++ L G+L+Q +R + ++ RD Sbjct: 234 IDSENTDLGIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFL 293 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 IATDVAARGID+ ++ V++ ++ +PE+ +HR GRTGRAGR+G+++ ++ + Sbjct: 294 IATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRS 353 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK------KMVDVLLAKHD 412 + E + + + PSVE + E+ Q+ + +D I+ D++ +V LL + Sbjct: 354 IENEIKMKIPSQNLPSVEEVIEK--QQDVWKSQVIDMIENDDEGVSHYDAIVTDLLDHYQ 411 Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472 PEK+ +++ + S ++ ++ F G KG + F ++ Sbjct: 412 PEKVVTALMKL--------------AFYSHDEKISKETYNFGETGAQ----KGMTRFFIN 453 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 VG + L+ + + GI+ ++IG I + + TF+EV + Sbjct: 454 VGRNVDMTPKKLVDEVAKLVGISPKAIGKIDIFENFTFIEVPEE 497 >gi|229844936|ref|ZP_04465073.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae 6P18H1] gi|229812070|gb|EEP47762.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae 6P18H1] Length = 613 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 192/585 (32%), Positives = 292/585 (49%), Gaps = 42/585 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTV 525 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL++ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFA 536 Query: 526 K---LDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 K L+K +Q+ +LG K D RG S F K G R +R Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora maris AB-18-032] gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora maris AB-18-032] Length = 566 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 175/515 (33%), Positives = 270/515 (52%), Gaps = 24/515 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALS GY T +Q + P L +D+L A TG+GKT AF L L + E P Sbjct: 29 ALSALGYEEPTPIQREAIGPLLAGRDLLGQAATGTGKTAAFALPLLQRMPDER----PTG 84 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P+AL + PTRELAVQV G V GG + R+ R L NG +VV TPG Sbjct: 85 DPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDNGVDVVVATPG 144 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R DHI L + +L VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FSAT+ I Sbjct: 145 RALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQTVLFSATMPSRI 204 Query: 194 TTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +A+ + D VR+ IA E + + A LVA + + A+ +L AIVF Sbjct: 205 DGMARAHLTDPVRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDVESPTAAIVF 264 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C +R V R T+ + ++ AL G +SQ++R + +R G A + +ATDVAARG+D+ Sbjct: 265 CRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRGGTADLLVATDVAARGLDV 324 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L V++ ++ S PE+ +HR GR GRAGR+G+++ + R + + R + + Sbjct: 325 EQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTGQRITID 384 Query: 371 PAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI-HRA 426 P+V +R R Q L++ L D + + +V+ L + D ++A +++ H A Sbjct: 385 KIPTVADLRTRRLELTQAALRESLLEDDLD-PFRVIVETLSDEFDLMEVALAAVKLAHEA 443 Query: 427 GLC----APEEITPVSLVSGRD-RFRDDSRAFKVGGG---SRDNFKGSSWFSLSVGSKQK 478 L A EEI V++ + R+ R D+R GG +R G++ + +G + Sbjct: 444 TLPGAEEAAEEIPQVAVRAPRETRPGADAR----GGDRRPARPRANGTTQVFIGLGRRAG 499 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + L+ + +GI + IG+I + + VEV Sbjct: 500 VRPQDLVGAITGETGIRGRDIGSIEIADRFSLVEV 534 >gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides DG6] gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides DG6] Length = 523 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 172/505 (34%), Positives = 263/505 (52%), Gaps = 35/505 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + GY T +QE + L DV+ AQTG+GKT AF L + L E Sbjct: 17 LGDLGYDEPTPIQEQAIPVMLSNSDVIAQAQTGTGKTAAFALPIVQRLRDER-------V 69 Query: 75 PLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL +APTRELA+QV + + Y K + VA GG ++R+ R L+ G +VVGTPG Sbjct: 70 PQALILAPTRELAMQVAEAI-YKYGKGRRISVAPVYGGQPIYRQLRALEQGVQVVVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+R L + + VVLDEADEMLD+GF +DIEFIL +P++R+ +FSAT+ A+ Sbjct: 129 RIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFILQQTPQQRQTALFSATMPEAV 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L + Y +DA R++IA+E V ++ +A+ IL +AI+FC T Sbjct: 189 QGLVQRYTRDAKRISIAAEQLATPRTRQTYYEVMPREKLDALCRILDVETPSSAIIFCRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R+ + L + L G++SQ +R ++ R+G+A + +ATDVAARG+D+PD+ Sbjct: 249 RSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAELLVATDVAARGLDIPDV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ ++PE +HR GRTGRAGR G+++ +I +R + + R + + + P Sbjct: 309 THVINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPRERRMLQIIERASRSRIQRQKLP 368 Query: 374 SVE--AIRERDAQRILQDPLFLDSIQGDEKK---MVDVLLAKHDPEKIAAGFLRIHRAGL 428 S+ A R R+A R D L QGD MV+ + +HD +AA ++ + Sbjct: 369 SLADVAARRREAFR---DALREVLEQGDLDPYILMVEEMSEEHDAVDLAAAAFKLLLNEV 425 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 E IT V G + G L VG + ++ + Sbjct: 426 EQGETITSVE------------------GDAAGVEPGMQRLFLDVGRFDRIRPSDIVGAI 467 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513 G++ +SIG+I + +FVEV Sbjct: 468 ANEVGLSGKSIGSIDIYDRFSFVEV 492 >gi|332289496|ref|YP_004420348.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179] gi|330432392|gb|AEC17451.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179] Length = 590 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 177/583 (30%), Positives = 286/583 (49%), Gaps = 33/583 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + A+S+ G++N + +Q+A + L +DVL AQTGSGKT AF L L S + + Sbjct: 8 LPENLLSAISDLGFINPSPIQQACIPHLLNGEDVLGMAQTGSGKTAAFALPLLSKIDLDK 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124 P L +APTRELA+QV E +AK G+ + GG + R L+ G Sbjct: 68 ------KYPQLLVMAPTRELAIQVADACEQ-FAKNLKGINIVTVYGGQRYDIQLRALKQG 120 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR K L++S LKA+VLDEADEML +GF +D+E ++ P+ + + Sbjct: 121 AQVVVGTPGRILDHIRRKTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPESHQTAL 180 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + + + ++ + I S + DI V + A+V L Sbjct: 181 FSATMPEPIRRITRRFMREPQEIKIQSTQQTAPDITQSYWFVNGFKKSEALVRFLEVEEF 240 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AIVF T+ + T +L + F+ AL+G+++QQ R L +R+GR + +ATDVA Sbjct: 241 DAAIVFTRTKTGTTEVTDLLERNGFRCAALNGDMTQQLREQTLDKLRNGRLDIVVATDVA 300 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR 361 ARGID+ + LV++ ++ +PE+ +HR GRTGRAGR G ++ + + + R ERL + Sbjct: 301 ARGIDIDRISLVVNYDIPLDPESYVHRIGRTGRAGRAGRALLFVEAREKRLLRNIERLMK 360 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ +R ++ + L + + D+ A E IAA + Sbjct: 361 KTVDEVQIPNHEQLQQVRRDKFRQRITAQLEHHDLDQYRSLLEDIFAADQSQEDIAAAMM 420 Query: 422 RI----HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS---SWFSLSVG 474 + + L EI P + RDR D R R + + + VG Sbjct: 421 MLLQGKQKLILPPDPEIKPARRENRRDRA-DRERKENPRSAERRGVRNELPMDLYRIEVG 479 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKG 530 E ++ + I+ + IG I++ VE+ + + +RT + K Sbjct: 480 RADGVEVGHIVGAIANEGNISSRYIGHIKLYDHYATVELPVEMPKPLLQHFQRTYVVGKP 539 Query: 531 IQLKYL--------GGEKPDFRGYKSSGFKSKNSQDGATKRFK 565 +++ L G P +G + F +K S G ++FK Sbjct: 540 MKMSLLEMAKNSDEGKHSPRKKGREGESF-TKRSHSGKERKFK 581 >gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase domain-containing protein [Truepera radiovictrix DSM 17093] gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM 17093] Length = 526 Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 140/347 (40%), Positives = 204/347 (58%), Gaps = 9/347 (2%) Query: 3 IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +F ++P + AL +G+ T++Q A L L DVL A+TG+GKT+AFGL +A+ Sbjct: 1 MFHDLPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIAN 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L E+ R AP AL + PTRELA+QV ELEWL + VV GG ++ D Sbjct: 61 RLEPESAR---GRAPRALILTPTRELALQVAGELEWLAPEHNVVT--VYGGTGYGKQASD 115 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GA IVV TPGR D+ + L +S ++ VLDEADEML+ GF +D+E +L ++P++R Sbjct: 116 LKRGADIVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATPQER 175 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ +LA + +D +R N+ S+ + D A+ L+ R + ++L Sbjct: 176 QTLLFSATLPRWAESLAARHLRDPLRANVTSD--ESVSYDEVAIEAPLASRLGVLSDVLH 233 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 HG +IVF T+A V K L A+ G+L+Q +R L+ R + V +A Sbjct: 234 VHGTGASIVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLVA 293 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 TDVAARG+D+P+++LV+H PE HRSGRTGRAGR G V + Sbjct: 294 TDVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRAGTVVLL 340 >gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 619 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/375 (37%), Positives = 216/375 (57%), Gaps = 10/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY N T +Q A ++P + KD+L AQTG+GKT AF L L + + ++ + Sbjct: 20 ALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------A 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELAVQV YAK G V GG S+H++ L+ G ++VGT Sbjct: 73 VPQILVLAPTRELAVQVAEAFSS-YAKFMKGFHVLPIYGGQSMHQQLNALKRGPQVIVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + L+A+VLDEADEML +GF DDIE+IL+ +P++R++ +FSAT+ Sbjct: 132 PGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALFSATMPE 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + KDA ++IA+ + I+ R V V+ ++ A+V +L + I+F Sbjct: 192 QIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A++ ++ G+ + IATDVAARG+D+ Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIATDVAARGLDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 312 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMK 371 Query: 372 APSVEAIRERDAQRI 386 PS E + ER R+ Sbjct: 372 VPSPETVAERRLSRL 386 >gi|16272194|ref|NP_438403.1| ATP-dependent RNA helicase [Haemophilus influenzae Rd KW20] gi|260580884|ref|ZP_05848709.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW] gi|1169261|sp|P44586|DEAD_HAEIN RecName: Full=Cold-shock DEAD box protein A homolog; AltName: Full=ATP-dependent RNA helicase deaD homolog gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd KW20] gi|260092507|gb|EEW76445.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW] Length = 613 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 192/585 (32%), Positives = 291/585 (49%), Gaps = 42/585 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTV 525 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL++ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFA 536 Query: 526 K---LDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 K L+K +Q+ +LG K D RG S F K G R +R Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B] gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B] Length = 637 Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 179/538 (33%), Positives = 277/538 (51%), Gaps = 46/538 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A + P + +D+L AQTG+GKT AF L L ++ A + Sbjct: 20 ALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLLCSVDAN------LN 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQV E YAK G V GG S++++ + L+ G +VVGT Sbjct: 74 APQILVLAPTRELAVQVA-EAFTSYAKHMKGFHVLPIYGGQSMYQQLQALRRGPQVVVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + LKA+VLDEADEML +GF DDIE+IL+ +P+ R++ +FSAT+ Sbjct: 133 PGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESRQLALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + ++ V ++IA+ + I+ R V V+ ++ A+V +L + I+F Sbjct: 193 QIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G+ + IATDVAARG+D+ Sbjct: 253 RTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIATDVAARGLDVE 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMK 372 Query: 372 APSVEAIRERDAQRI---LQDPL---FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 PS E++ ER R+ + D L LD ++G ++ L + D E++AA L H+ Sbjct: 373 IPSPESVAERRLSRLGEQVADILANEHLDFMKGAVAQLCQQL--EVDTEQLAAALL--HQ 428 Query: 426 AGLCAPEEITPVSLVSGRDRF--------------------RDDSRAFKVGGGSRDNFKG 465 L P ++ P RD F R DSR GS D K Sbjct: 429 VQLERPLQL-PAMHERQRDNFDERTGRGQNDRAERGDRNERRRDSRPLPGNFGSADTLKD 487 Query: 466 SSWFSLS-----VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 + S+ VG ++ + + I+ + IG I++ +T V++ DG+ Sbjct: 488 NPDISMKRYLIDVGRDHNVGVGNIVGAIANEANIDSRYIGQIQLYDAVTTVDL-PDGM 544 >gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp. lyrata] gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp. lyrata] Length = 612 Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 218/372 (58%), Gaps = 7/372 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +ALS +G L +Q+A+L P + +D++ A+TG+GKT+AFG+ + ++ N Sbjct: 110 PEIV-KALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNA 168 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + PL L +APTRELA QV E E+ + + GG + ++ R L G + Sbjct: 169 KHGRGRNPLCLVLAPTRELARQV--EKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDV 226 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VGTPGR+ D ++ LN+S ++ VVLDEAD+ML +GF +D+E IL+ P+KR+ +MFSA Sbjct: 227 AVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSA 286 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-A 244 T+ I +L K Y + + +++ ++ Q I ++L R + I ++ H Sbjct: 287 TMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITTYSILADSYGRASIIGPLVTEHAKG 346 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVF T+ R + LA F+ AL G++SQ +R L RDG + +ATDVA Sbjct: 347 GKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNILVATDVA 405 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+P+++L+IH EL +N E +HR+GRTGRAG+KG ++ + Q+ R + + RE Sbjct: 406 ARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVG 465 Query: 365 VSVVWEPAPSVE 376 P+ +VE Sbjct: 466 SRFTELPSIAVE 477 >gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC 51172] gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC 51172] Length = 550 Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 160/520 (30%), Positives = 280/520 (53%), Gaps = 23/520 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ G+ + + +QE + P L KDV+ AQTG+GKT AF + + ++ Sbjct: 29 AIADMGFKSPSPIQEETIPPLLDGKDVIGQAQTGTGKTAAFAIPII-------EKIEANG 81 Query: 74 APLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTREL +QV +E+ L TG+ + GG + ++ + L+ G IVVGTP Sbjct: 82 LTQALVLCPTRELCIQVAKEIGNLAKYHTGIKILSVYGGTQIVKQIKALKKGVEIVVGTP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +R + L + +LK VVLDEADEM D+GFRDD++FILD++ R+ FSAT+ Sbjct: 142 GRLMDLMRRRVLKLDNLKIVVLDEADEMFDMGFRDDMKFILDATNDDRQTCFFSATMGKE 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I+ +K YQK+ V + I ++ + ID + + +D++ + +L + + AI+FC+ Sbjct: 202 ISEFSKIYQKNPVTIKIKAKELTVNKIDQHFIKLKEADKEETLTRLLEINKPRLAIIFCN 261 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + + L++ + V L G+L Q +R ++ R+ + +ATDVAARG+D+ D Sbjct: 262 TKRKVDKLVESLSKKSYLVDGLHGDLKQTQRDIVMKKFRNNTIDILVATDVAARGLDVDD 321 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 +++VI+ +L E +HR GRT RAGR G+S +I R + + + ++ Sbjct: 322 VDMVINYDLPQLDEYYVHRIGRTARAGRSGLSYSLISGRDNERLKAIEKYTKATIKQAQI 381 Query: 373 PSVEAIRERDAQRILQDPLF--LDSIQGDEKK---MVDVLLAKHDPEKIAAGFL--RIHR 425 PS+ + +R+ + + D + L++ G E++ ++ ++ +DP I+ L ++++ Sbjct: 382 PSLVQM-DRNLETGVIDDIIEKLENYTGVEREKSILIRLMEKGYDPFVISQVLLSDKLNK 440 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485 L E+I +G D ++ S A K + ++ F L+ G ++ Sbjct: 441 DNLDHHEKI------AGVDTPKEKSTANKKKSNKYKDENMTTLF-LNRGKMDNFTKDKII 493 Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 L R + + + IG IR+Q +FV+V V RT+ Sbjct: 494 KALNRLAHVPNKKIGQIRIQKSYSFVDVEKSVVYECIRTM 533 >gi|329123747|ref|ZP_08252307.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116] gi|327469946|gb|EGF15411.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116] Length = 613 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 192/585 (32%), Positives = 291/585 (49%), Gaps = 42/585 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL+ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536 Query: 523 RTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 +T L+K +Q+ +LG K D RG S F K G R +R Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|257464721|ref|ZP_05629092.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor 202] gi|257450381|gb|EEV24424.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor 202] Length = 604 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 171/549 (31%), Positives = 284/549 (51%), Gaps = 27/549 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +A++E G+V + +Q+A + L +DVL AQTGSGKT AF L + + + E Sbjct: 13 LPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPILAQIDPEQ 72 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 R+ P L +APTRELA+QV E G+ GG + R L+NGA Sbjct: 73 -RY-----PQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIRALKNGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S LKA+VLDEADEML +GF +D+E ++ P+ + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPENHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + K + KD V I + R DI LV +++A++ L Sbjct: 187 SATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFLEVEDFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ ++ + ++ AL+G+++QQ R AL ++ GR + +ATDVAA Sbjct: 247 AAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362 RGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L ++ Sbjct: 307 RGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLIKK 366 Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 V P+ E + E+ + ++ L ++ + + D+ A D E++AA Sbjct: 367 PIDEVAI---PNHEILMEKRRAKFKARIEKQLEHHDLEKYRELLEDLFTADQDHEELAAA 423 Query: 420 FLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFSLSV 473 + + + L P + + R + R++ R+ + G R+ N + + + Sbjct: 424 MMMLLQEKQKLILPPDPVIKAARGERGKGRENPRSAERRGNGREHRDNNGVAMDLYRIEL 483 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVKLD 528 G + E R ++ + IN + IG I++ + +E+ L ++ L Sbjct: 484 GREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKARVLS 543 Query: 529 KGIQLKYLG 537 K +Q+ +LG Sbjct: 544 KPMQMSFLG 552 >gi|145632474|ref|ZP_01788208.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655] gi|144986669|gb|EDJ93221.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655] Length = 613 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 191/585 (32%), Positives = 292/585 (49%), Gaps = 42/585 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + + V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNNPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTV 525 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL++ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFA 536 Query: 526 K---LDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 K L+K +Q+ +LG K D RG S F K G R +R Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1] Length = 532 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 167/526 (31%), Positives = 265/526 (50%), Gaps = 40/526 (7%) Query: 2 KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K+F N+ + I + L E G+ T +Q+ + L D++ AQTG+GKT AF + + Sbjct: 8 KLFGNLELDRRIVDGLKEMGFEEPTPIQQLAVPQVLAGYDMIGQAQTGTGKTAAFSIPMI 67 Query: 60 STLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 +R +P + + I PTRELA+QV E+ + + + V GG S+ R+ Sbjct: 68 -------ERLNPRKREVQTIIITPTRELAIQVAEEISKIGRFSRIKVLPIYGGQSIERQI 120 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L+ G +VVGTPGRL DH+R + L + + V+LDEADEMLD+GF +DIE I+ +P Sbjct: 121 RSLRLGVQVVVGTPGRLLDHLRRQTLKVDQVDMVILDEADEMLDMGFIEDIEEIIRHTPA 180 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I LA+ Y D V ++ N I+ ++ A+ I Sbjct: 181 ERQTLLFSATMPQEIIRLAQQYMTDPKYVTVSKTNLTVPQIEQVFYEAPEKNKLEALCRI 240 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L I+FC T+ V L F AL G+LSQQ+R+ ++ R + Sbjct: 241 LDISDISQGILFCRTKRGVDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSEVELL 300 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARG+D+ + VI+ ++ +PE +HR GRTGRAGR G+++ +I R+ + Sbjct: 301 VATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIISPREYRQLRQ 360 Query: 359 LFREANVSVVWEPAPSV--------EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410 + + + PS+ E+I+ER Q I + L G + +VD L+ + Sbjct: 361 IENITKTHIKRQKLPSIADVVERQKESIKERLIQIINEGKL------GYYRSVVDALVDE 414 Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 +DP IAA L++ ++ P S +D V G+ G Sbjct: 415 YDPMDIAAAALKLSM-------DLEPNS---------EDVNLNTVNFGNTGARPGMVRLF 458 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 L++G K + ++ ++ SGI+ IG I + + +FVEV D Sbjct: 459 LTLGRKDRVTPPEIIKLVSDESGISGGQIGNINIYENFSFVEVPED 504 >gi|148827371|ref|YP_001292124.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG] gi|148718613|gb|ABQ99740.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG] Length = 613 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 192/585 (32%), Positives = 291/585 (49%), Gaps = 42/585 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFIAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL+ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536 Query: 523 RTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 +T L+K +Q+ +LG K D RG S F K G R +R Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|22331253|ref|NP_188872.2| PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] gi|75335516|sp|Q9LUW5|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53 gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana] gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana] gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana] gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana] Length = 616 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 139/372 (37%), Positives = 220/372 (59%), Gaps = 7/372 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +ALS +G L +Q+A+L P + +D++ A+TG+GKT+AFG+ + ++ N Sbjct: 113 PEIV-KALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNA 171 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + PL L +APTRELA QV E E+ + + GG + ++ R L G + Sbjct: 172 KHGRGRNPLCLVLAPTRELARQV--EKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDV 229 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VGTPGR+ D ++ LN+S ++ VVLDEAD+ML +GF +D+E IL+ P+KR+ +MFSA Sbjct: 230 AVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSA 289 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 T+ I +L K Y + + V++ ++ Q +D ++A S +I+ L AK Sbjct: 290 TMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKG 349 Query: 247 A--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVF T+ R + LA F+ AL G++SQ +R L RDG + +ATDVA Sbjct: 350 GKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNILVATDVA 408 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+P+++L+IH EL +N E +HR+GRTGRAG+KG ++ + Q+ R + + RE Sbjct: 409 ARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVG 468 Query: 365 VSVVWEPAPSVE 376 P+ +VE Sbjct: 469 SRFTELPSIAVE 480 >gi|240949643|ref|ZP_04753978.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor NM305] gi|240295901|gb|EER46577.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor NM305] Length = 604 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 170/549 (30%), Positives = 282/549 (51%), Gaps = 27/549 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +A++E G+V + +Q+A + L +DVL AQTGSGKT AF L + + + E Sbjct: 13 LPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPILAQIDPEQ 72 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 P L +APTRELA+QV E G+ GG + R L+NGA Sbjct: 73 ------RHPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIRALKNGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S LKA+VLDEADEML +GF +D+E ++ P+ + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPEDHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + K + KD V I + R DI LV +++A++ L Sbjct: 187 SATMPEPIRRITKRFMKDPQEVKIQASQRSAPDIAQSYWLVNGFRKNDALLRFLEVEDFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ ++ + ++ AL+G+++QQ R AL ++ GR + +ATDVAA Sbjct: 247 AAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362 RGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L ++ Sbjct: 307 RGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLIKK 366 Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 V P+ E + E+ + ++ L ++ + + D+ A D E++AA Sbjct: 367 PIDEVAI---PNHEILMEKRRAKFKARIEKQLEHHDLEKYRELLEDLFTADQDHEELAAA 423 Query: 420 FLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFSLSV 473 + + + L P + + R + R++ R+ + G R+ N + + + Sbjct: 424 MMMLLQEKQKLILPPDPVIKAARGERGKGRENPRSAERRGNGREHRDNNGVAMDLYRIEL 483 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVKLD 528 G + E R ++ + IN + IG I++ + +E+ L ++ L Sbjct: 484 GREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKARVLS 543 Query: 529 KGIQLKYLG 537 K +Q+ +LG Sbjct: 544 KPMQMSFLG 552 >gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 622 Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 216/375 (57%), Gaps = 10/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L + + ++ + Sbjct: 20 ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------A 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELAVQV YAK G V GG S+H++ L+ G ++VGT Sbjct: 73 VPQILVLAPTRELAVQVAEAFSS-YAKFMKGFHVLPIYGGQSMHQQLNALKRGPQVIVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + L+A+VLDEADEML +GF DDIE+IL+ +P++R++ +FSAT+ Sbjct: 132 PGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALFSATMPE 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + KDA ++IA+ + I+ R V V+ ++ A+V +L + I+F Sbjct: 192 QIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A++ +++G+ + IATDVAARG+D+ Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 312 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMK 371 Query: 372 APSVEAIRERDAQRI 386 PS E + ER R+ Sbjct: 372 VPSPETVAERRLSRL 386 >gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor] gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor] Length = 618 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 220/369 (59%), Gaps = 11/369 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E L+++G L +Q A+L P ++ +D++ A+TG+GKT+AFG+ + ++ N+++ Sbjct: 109 IVERLAKKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIPILDAIIRHNEKYK 168 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129 P PLA+ +APTRELA QV RE + + + +C+ GG + ++ R L G +V+ Sbjct: 169 PGKFPLAIVLAPTRELAKQVERE----FLDSSPLETLCVYGGTPIMQQIRQLNYGVDVVI 224 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D ++ L+++ ++ VVLDEAD+ML +GF D+E IL+ P +R+ LMFSAT+ Sbjct: 225 GTPGRVIDLLKRGALSLAEIRFVVLDEADQMLSVGFDQDVETILERVPPQRQTLMFSATM 284 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHG-AKN 246 I L + Y V V++ E+ Q + V+ +R V +++ H Sbjct: 285 PTWIRKLTQKYLNSPVTVDLVGEDDQKLAEGISLLSVSSENRQKPAVLGELIKEHAKGGK 344 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ R + ++ FQ AL G++SQ +R L RDGR + IATDVAAR Sbjct: 345 CIVFTQTKRDADRLSHSMSRS-FQCEALHGDISQSQRERTLGGFRDGRFNILIATDVAAR 403 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+P+++LVIH EL ++ E +HRSGRTGRAG+KG ++ V+ Q RA R+ E +V Sbjct: 404 GLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAI-VMYNYEQSRAVRVI-ERDVG 461 Query: 367 VVWEPAPSV 375 + P + Sbjct: 462 CKFTELPKI 470 >gi|45358020|ref|NP_987577.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus maripaludis S2] gi|44920777|emb|CAF30013.1| Probable ATP dependent RNA helicase [Methanococcus maripaludis S2] Length = 538 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 168/542 (30%), Positives = 278/542 (51%), Gaps = 36/542 (6%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56 M+ F+N+ I EAL ++G+ N T +QE + P L E +D++ AQTG+GKT AFG+ Sbjct: 1 MESFKNLGLSDEILEALEKKGFTNPTPIQEQAI-PILIEGKRDIVGQAQTGTGKTAAFGI 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 + T+ E+ R + A L +APTRELA+QV E++ + + V GG S+ R Sbjct: 60 PILETI-DEHSRNTQA-----LILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDR 113 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + R+L+ G IVVGTPGR+ DHI + + + ++ VVLDEADEML++GF DD+E IL S Sbjct: 114 QIRELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSV 173 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 +RML+FSAT+ +I LAKNY ++ + + + + D + D+ + Sbjct: 174 STDKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLS 233 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 I+ ++FC T+A V L E + L G+++Q +R L + + Sbjct: 234 RIIDTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKIN 293 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 V +ATDVAARGID+ DL V++ ++ NPE+ +HR GRTGRAG++G ++ + + R+ Sbjct: 294 VLVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKF 353 Query: 357 ERLFREANVSVVWEPAPSV-------EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409 + + + A + E P V + + +L+ + D +KM LL Sbjct: 354 KYIQKIAKTEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADC-----EKMASDLLE 408 Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--RDDS---RAFKVGGGSRDNFK 464 DP+++ + L+ + + S R R+DS R+F G R Sbjct: 409 DADPQEVLSAVLKYALKDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGENVR---- 464 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 +++G K + L+ + R S + + I ++V +FV VS+ +++ + Sbjct: 465 ----LFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDS 520 Query: 525 VK 526 K Sbjct: 521 FK 522 >gi|291537820|emb|CBL10931.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis XB6B4] Length = 535 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 163/516 (31%), Positives = 269/516 (52%), Gaps = 38/516 (7%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQV+ A++E G+ T +Q + + DV+ AQTG+GKT +FG+ + + N Sbjct: 18 PQVL-RAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHKVDPNNK 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 + + ++PTRELA+QV E+ L AK GV + GG + R+ + L+ GA Sbjct: 77 KTQ------VIILSPTRELAIQVADEIRKL-AKYMHGVKILPVYGGQEISRQIKALKGGA 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184 I++GTPGR+ DH+R K + + +VLDEADEML++GFR+DIE IL+ P++ R+ ++ Sbjct: 130 QIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVL 189 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K YQ DAV + + + +I+ V D+ + +L Y+ Sbjct: 190 FSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLDYYNP 249 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K ++VFC+T+ V T+ L + L G++ Q +R ++ R G+ + IATDVA Sbjct: 250 KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVA 309 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ D+E V + ++ + E +HR GRTGRAGR G + + + + + R Sbjct: 310 ARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCK 369 Query: 365 VSVVWEPAPSVEAIRERDAQ-------RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417 +V P PS + + + A+ RI+ + D+I EK++ + D IA Sbjct: 370 TKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAMD---IA 426 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 A FL+ + + ++L D R+DS F G +G +++G K Sbjct: 427 AAFLK---------QALGQINL----DNDREDSFDFDNTGAE----EGMVRLFINIGKKD 469 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + ++ + SG+ + +GAI + TFVEV Sbjct: 470 RVKPGDILGAVAGESGMPGKLVGAIDMYDKYTFVEV 505 >gi|145637208|ref|ZP_01792870.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH] gi|145269653|gb|EDK09594.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH] Length = 613 Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 191/585 (32%), Positives = 290/585 (49%), Gaps = 42/585 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAH-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A ++VGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL+ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536 Query: 523 RTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 +T L+K +Q+ +LG K D RG S F K G R +R Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|291537686|emb|CBL10798.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis M50/1] Length = 530 Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 163/516 (31%), Positives = 269/516 (52%), Gaps = 38/516 (7%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQV+ A++E G+ T +Q + + DV+ AQTG+GKT +FG+ + + N Sbjct: 13 PQVL-RAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHKVDPNNK 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 + + ++PTRELA+QV E+ L AK GV + GG + R+ + L+ GA Sbjct: 72 KTQ------VIILSPTRELAIQVADEIRKL-AKYMHGVKILPVYGGQEISRQIKALKGGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184 I++GTPGR+ DH+R K + + +VLDEADEML++GFR+DIE IL+ P++ R+ ++ Sbjct: 125 QIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K YQ DAV + + + +I+ V D+ + +L Y+ Sbjct: 185 FSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLDYYNP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K ++VFC+T+ V T+ L + L G++ Q +R ++ R G+ + IATDVA Sbjct: 245 KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ D+E V + ++ + E +HR GRTGRAGR G + + + + + R Sbjct: 305 ARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCK 364 Query: 365 VSVVWEPAPSVEAIRERDAQ-------RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417 +V P PS + + + A+ RI+ + D+I EK++ + D IA Sbjct: 365 TKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAMD---IA 421 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 A FL+ + + ++L D R+DS F G +G +++G K Sbjct: 422 AAFLK---------QALGQINL----DNDREDSFDFDNTGAE----EGMVRLFINIGKKD 464 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + ++ + SG+ + +GAI + TFVEV Sbjct: 465 RVKPGDILGAVAGESGMPGKLVGAIDMYDKYTFVEV 500 >gi|257413647|ref|ZP_04743689.2| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia intestinalis L1-82] gi|257202759|gb|EEV01044.1| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia intestinalis L1-82] Length = 553 Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 163/516 (31%), Positives = 269/516 (52%), Gaps = 38/516 (7%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQV+ A++E G+ T +Q + + DV+ AQTG+GKT +FG+ + + N Sbjct: 36 PQVL-RAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHKVDPNNK 94 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 + + ++PTRELA+QV E+ L AK GV + GG + R+ + L+ GA Sbjct: 95 KTQ------VIILSPTRELAIQVADEIRKL-AKYMHGVKILPVYGGQEISRQIKALKGGA 147 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184 I++GTPGR+ DH+R K + + +VLDEADEML++GFR+DIE IL+ P++ R+ ++ Sbjct: 148 QIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVL 207 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K YQ DAV + + + +I+ V D+ + +L Y+ Sbjct: 208 FSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLDYYNP 267 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K ++VFC+T+ V T+ L + L G++ Q +R ++ R G+ + IATDVA Sbjct: 268 KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVA 327 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ D+E V + ++ + E +HR GRTGRAGR G + + + + + R Sbjct: 328 ARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCK 387 Query: 365 VSVVWEPAPSVEAIRERDAQ-------RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417 +V P PS + + + A+ RI+ + D+I EK++ + D IA Sbjct: 388 TKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAMD---IA 444 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 A FL+ + + ++L D R+DS F G +G +++G K Sbjct: 445 AAFLK---------QALGQINL----DNDREDSFDFDNTGAE----EGMVRLFINIGKKD 487 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + ++ + SG+ + +GAI + TFVEV Sbjct: 488 RVKPGDILGAVAGESGMPGKLVGAIDMYDKYTFVEV 523 >gi|145640153|ref|ZP_01795737.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021] gi|145274739|gb|EDK14601.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21] Length = 613 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 191/585 (32%), Positives = 290/585 (49%), Gaps = 42/585 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAH-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A ++VGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL+ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536 Query: 523 RTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 +T L+K +Q+ +LG K D RG S F K G R +R Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|309750350|gb|ADO80334.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2866] Length = 613 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 182/554 (32%), Positives = 278/554 (50%), Gaps = 27/554 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLSV 473 + + L P + P+ R D R R KG + + V Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRREHNERGDRRENPRSAERRGERKGYGNPRPMDLYRIEV 483 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKLD 528 G E R ++ + IN + IG I++ D T VE+ G+ +LL+ +T L+ Sbjct: 484 GRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFGKTRVLN 542 Query: 529 KGIQLKYLGGEKPD 542 K +Q+ +LG K D Sbjct: 543 KQMQMSFLGAVKSD 556 >gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium symbiosum WAL-14673] gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium symbiosum WAL-14673] Length = 552 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 165/538 (30%), Positives = 278/538 (51%), Gaps = 29/538 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A+++ G+ + +Q + +L D++ AQTG+GKT AFG+ L Sbjct: 10 NLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLLQ----- 64 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123 + P S L A+ + PTRELA+QV E+ L GV V GG + R+ R L++ Sbjct: 65 --KVDPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKD 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +++GTPGR+ DH+R K L + H+ VVLDEADEML++GF +D+E IL P++R+ + Sbjct: 123 GIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT+ PAI +AK +QKD V + + + V + + +L + Sbjct: 183 MFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMYD 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K +IVFC+T+ V + L + L G+L Q +R + R+GR + IATDV Sbjct: 243 PKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D+E V + ++ + E +HR GRTGRAGR+G + ++ + + R Sbjct: 303 AARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREIQRYC 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVD-----VLLAKHDPEKI 416 ++ +P PS+ + ++I+ + + DS D K+++ VL + + Sbjct: 363 KTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDS---DLDKIINIVEKRVLEEDYTTLDL 419 Query: 417 AAGFLRIHRAGLCAPEEI----TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW---- 468 AA L++ E+I TP+ + + + +R+ G G+R +G S Sbjct: 420 AAALLKMSMGD--DYEDISVERTPLRSLDELEDYERGARSRNNGRGARSGSRGGSENVAR 477 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 +++G Q + ++ + SG+ + +G+I + TFVEV + D++ + +K Sbjct: 478 LFINIGKNQGIKPGDILGAIAGESGMPGRMVGSIDMFDKYTFVEVPREQADVVLQAMK 535 >gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925] gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925] Length = 528 Score = 246 bits (628), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 167/519 (32%), Positives = 264/519 (50%), Gaps = 35/519 (6%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++P I A+++ G+ + +QE + L KD++ AQTG+GKT AFG+ T Sbjct: 6 FEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERR 119 + N + + PTRELA+Q +E+ L Y K V+AV GG + R+ + Sbjct: 66 IDLNNKSLQ------IMVLCPTRELAIQATQEVHKLGKYKKDISVLAVY-GGQPIDRQIK 118 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G I++GTPGR+ DHIR K L ++K +VLDEADEMLD+GFRDDIE I+ P+ Sbjct: 119 ALKRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQEIPQN 178 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ ++FSAT++ AI L+K YQ +A + + + +I+ R + V +++ + ++ Sbjct: 179 RQTILFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEVKENNKLEVLSRLI 238 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 K +++FC+T+ V L + L G++ Q +R + R+G + + Sbjct: 239 DMRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILV 298 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARGID+ D+E V + +L + E +HR GRTGRAGR G++ + R+ + Sbjct: 299 ATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDI 358 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDVLLAKHDPE---- 414 R V PS + E A L+ ++I +G K +D + D + Sbjct: 359 ERYTKTKVKRAEIPSASDVEEFKANTFLEK--VKNTIEEGHLGKYIDYIENLLDEDYATI 416 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474 IAA L++ G EEI +S DD G G +++G Sbjct: 417 DIAAALLKMS-LGEEKKEEILNIS---------DDI-------GDTGAEPGMVRLFINIG 459 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 K +AR ++ + +GI + IG I + TFVEV Sbjct: 460 RNNKVQARDVIGAIAGETGIAGKVIGKIDIYDKFTFVEV 498 >gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC 33656] gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC 33656] gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM 17629] gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1] Length = 530 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 161/518 (31%), Positives = 270/518 (52%), Gaps = 36/518 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + + G+ T +Q + L +DV+ AQTG+GKT AFG+ + ++ A + Sbjct: 13 PKIL-RGIKDMGFEEATPIQAQGIPAVLSGRDVIGQAQTGTGKTAAFGIPVLESVDASSH 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 + + ++PTRELA+QV E+ L AK GV V GG + R+ + L+ G Sbjct: 72 KTQ------VIILSPTRELAIQVADEIRKL-AKYMHGVKVLPVYGGQDISRQIKALKGGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++GTPGRL DH+R K + H+K +VLDEADEML++GFR+DIE +L+ P++ + ++F Sbjct: 125 QIIIGTPGRLMDHLRRKTIRPDHVKTIVLDEADEMLNMGFREDIETVLEYLPQEHQTVLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + YQ DA+ + I + ++ID V D+ + + +L Y+ K Sbjct: 185 SATMPKPILEITRKYQHDAINIKIVKKELTVANIDQYYYDVKRKDKIDVLTRLLDYYNPK 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++VFC+T+ V L + L G++ Q +R ++ R+G+ + IATDVAA Sbjct: 245 LSLVFCNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILIATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ D+E V + +L + E +HR GRTGRAGR G + + + + + R Sbjct: 305 RGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRCGKAFSFVKGKEVYKLKDIQRYCKT 364 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVL-----LAKHDPEKIAA 418 + +P PS + + + A++I+ + +I +E ++D++ + + IAA Sbjct: 365 KIYAQPIPSSDDVAKIRAEKIMDQ---ISTIIDEENLTSVIDIIENQINESDYTAMDIAA 421 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 FL + A E T S +DD G G ++VG K K Sbjct: 422 AFL---YQAMGASEISTAES--------KDDYDFHNTGAED-----GMVRLFINVGKKDK 465 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + ++ + SG+ + +GAI + TFVEV A+ Sbjct: 466 IKPGDILGAIAGESGMPGRLVGAIDMYDKYTFVEVPAE 503 >gi|315634792|ref|ZP_07890074.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393] gi|315476344|gb|EFU67094.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393] Length = 600 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 189/588 (32%), Positives = 303/588 (51%), Gaps = 35/588 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I A+S+ G+ + +Q+ + L +DVL AQTGSGKT AF L + LA+ Sbjct: 13 LPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPI----LAQI 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YAK G+ + GG + R L+ G Sbjct: 69 D--PTEKHPQLLVMAPTRELAIQVADACEQFVKYAK-GINIVTLYGGQRYDIQLRALKQG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DH+R L+++ LKA+VLDEADEML +GF DD+E ++ P+ + + Sbjct: 126 AQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEHHQTAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + KD V I + + DI V +++A++ L Sbjct: 186 FSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGVRKNDALLRFLEVEDF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L +H F+ AL+G+++QQ R L +R G + +ATDVA Sbjct: 246 DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 306 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNVEHLIK 365 Query: 362 EANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 + N+ V P V +A R + + + L ++ + + D+ A E IAA Sbjct: 366 K-NIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQEDIAAAM 424 Query: 421 LRIHRAG---LCAPEEITPVSLVSGRDRF-RDDSRAFKVGGGSRDNFKGS------SWFS 470 + + + + P+ + V + RDR R D R R KG + Sbjct: 425 MMLLQGKQKLILPPDPV--VDKKARRDRNERSDRRENPRSAERRGERKGYGSPQPMDLYR 482 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTVK-- 526 + VG E R ++ + IN + IG I++ D + +E+ G+ +LL++ K Sbjct: 483 IEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELP-QGMPKELLQQFAKTR 541 Query: 527 -LDKGIQLKYLGGEKPDFRGYKSSGFKSKNS--QDGATKRFKRFKGAS 571 L+K +++ ++G K + RG + G K + +D K ++FK S Sbjct: 542 VLNKQMRMSFIGEAKGE-RGGDNFGGKRRGGRFEDKGFKGDRKFKEKS 588 >gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 622 Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 215/375 (57%), Gaps = 10/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L + + ++ + Sbjct: 20 ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------A 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELAVQV YAK G V GG S+H++ L+ G ++VGT Sbjct: 73 VPQILVLAPTRELAVQVAEAFSS-YAKFMKGFHVLPIYGGQSMHQQLNALKRGPQVIVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + L+A+VLDEADEML +GF DDIE+IL+ +P++R++ +FSAT+ Sbjct: 132 PGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALFSATMPE 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + KDA ++IA+ + I+ R V V+ ++ A+V +L + I+F Sbjct: 192 QIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A++ ++ G+ + IATDVAARG+D+ Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIATDVAARGLDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 312 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMK 371 Query: 372 APSVEAIRERDAQRI 386 PS E + ER R+ Sbjct: 372 VPSPETVAERRLSRL 386 >gi|145631096|ref|ZP_01786871.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021] gi|144983381|gb|EDJ90863.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021] Length = 614 Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 189/602 (31%), Positives = 295/602 (49%), Gaps = 52/602 (8%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAH-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A ++VGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DI+ V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL+ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536 Query: 523 RTVKLDKGIQLKYLGGEKPDF-------------RGYKSSGFKSKNSQDGATKRFKRFKG 569 +T L+K +Q+ +LG K D RG G + +N ++G + ++F Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRGSDDFNGKRKGRGGDFRGERGRNERNGDNRGNRKFNE 596 Query: 570 AS 571 S Sbjct: 597 KS 598 >gi|167855120|ref|ZP_02477892.1| intracellular septation protein A [Haemophilus parasuis 29755] gi|167853755|gb|EDS24997.1| intracellular septation protein A [Haemophilus parasuis 29755] Length = 603 Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 173/551 (31%), Positives = 284/551 (51%), Gaps = 31/551 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +++E G+V + +Q+A + L +DVL AQTGSGKT AF L L + + E Sbjct: 13 LPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLAQIDPEQ 72 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 P L +APTRELA+QV E G+ GG + R L+NG Sbjct: 73 ------RHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIRALKNGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S LKA+VLDEADEML +GF +D+E ++ P+ + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPEDHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + K + KD V I + R DI LV +++A++ L Sbjct: 187 SATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ ++ + ++ AL+G+++QQ R AL+ ++ GR V +ATDVAA Sbjct: 247 AAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVIVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362 RGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + + E L ++ Sbjct: 307 RGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKNIEHLIKK 366 Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 V P P+ E + E+ ++ + L ++ + + D+ A D E++AA Sbjct: 367 PIDEV---PVPNHEILMEKRREKFKARISLQLEHHDLELYRELLEDLFTADQDHEELAAA 423 Query: 420 FLRI--HRAGLCAP--EEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFSL 471 + + + L P EI P + R + ++ R+ + GG R+ N + + Sbjct: 424 MMMLLQEKQKLILPPDPEIRPSR--AERGKGHENPRSAERRGGGREHRDNNGVAMDLYRI 481 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVK 526 +G + E R ++ + IN + IG I++ + +E+ L ++ Sbjct: 482 ELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKARV 541 Query: 527 LDKGIQLKYLG 537 L K +Q+ +LG Sbjct: 542 LSKPMQMSFLG 552 >gi|148825485|ref|YP_001290238.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE] gi|229846320|ref|ZP_04466428.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1] gi|89892371|gb|ABD78963.1| HI0231-like protein [Haemophilus influenzae] gi|148715645|gb|ABQ97855.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE] gi|229810413|gb|EEP46131.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1] Length = 613 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 192/585 (32%), Positives = 291/585 (49%), Gaps = 42/585 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q+A + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQACIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAH-GSRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DI+ V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467 + + L P P + R R R+D R + G G N + Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQAMD 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522 + + VG E R ++ + IN + IG I++ D T VE+ G+ +LL+ Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536 Query: 523 RTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 +T L+K +Q+ +LG K D RG S F K G+ R +R Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGSDFRGER 579 >gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum WAL-14163] gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum WAL-14163] Length = 552 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 164/536 (30%), Positives = 275/536 (51%), Gaps = 25/536 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A+++ G+ + +Q + +L D++ AQTG+GKT AFG+ L Sbjct: 10 NLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLLQ----- 64 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123 + P S L A+ + PTRELA+QV E+ L GV V GG + R+ R L++ Sbjct: 65 --KVDPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKD 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +++GTPGR+ DH+R K L + H+ VVLDEADEML++GF +D+E IL P++R+ + Sbjct: 123 GIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT+ PAI +AK +QKD V + + + V + + +L + Sbjct: 183 MFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMYD 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K +IVFC+T+ V + L + L G+L Q +R + R+GR + IATDV Sbjct: 243 PKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D+E V + ++ + E +HR GRTGRAGR+G + ++ + + R Sbjct: 303 AARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREIQRYC 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVD-----VLLAKHDPEKI 416 ++ +P PS+ + ++I+ + + DS D K+++ VL + + Sbjct: 363 KTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDS---DLDKIINIVEKRVLEEDYTTLDL 419 Query: 417 AAGFLRIHRAGLCA--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW----FS 470 AA L++ E TP+ + + + +R G G+R +G S Sbjct: 420 AAALLKMSMGDDYEDISVERTPLRSLDELEDYERGARNRNNGRGARSGSRGGSENVARLF 479 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 +++G Q + ++ + SG+ + +G+I + TFVEV + D++ + +K Sbjct: 480 INIGKNQGIKPGDILGAIAGESGMPGRMVGSIDMFDKYTFVEVPREQADVVLQAMK 535 >gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873] gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873] Length = 528 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 163/522 (31%), Positives = 265/522 (50%), Gaps = 41/522 (7%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++P I A+++ G+ + +QE + L KD++ AQTG+GKT AFG+ T Sbjct: 6 FEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRD 120 + +N + + PTRELA+Q +E+ L K G+ V GG + R+ + Sbjct: 66 IDLDNKSLQ------IMVLCPTRELAIQATQEVHKLGKYKKGINVLAVYGGQPIDRQIKA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G I++GTPGR+ DHIR K L ++K +VLDEADEMLD+GFRDDIE I+ + P+ R Sbjct: 120 LKRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQAIPQNR 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT++ AI L+K YQ +A + + + +I+ R + V +++ + ++ Sbjct: 180 QTILFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEVKENNKLEVLSRLID 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 K +++FC+T+ V L + L G++ Q +R + R+G + +A Sbjct: 240 MRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGID+ D+E V + +L + E +HR GRTGRAGR G++ + R+ + Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDIE 359 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPE- 414 R V PS + E + FL+ ++G + K +D + D + Sbjct: 360 RYTKTKVKRAEIPSASDVEE------FKVNAFLEKVKGTIEEGHLGKYIDYIENLLDEDY 413 Query: 415 ---KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471 IAA L++ G EEI ++ G D+ A G + Sbjct: 414 ATIDIAAALLKMS-LGEEKKEEILDINEEIG------DTGA----------EPGMVRLFI 456 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++G K +AR ++ + +GI + IG I + TFVEV Sbjct: 457 NIGRNNKIQARDVIGAIAGETGIAGKVIGKIDIYDKFTFVEV 498 >gi|27904825|ref|NP_777951.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340034|sp|Q89AF9|DEAD_BUCBP RecName: Full=Cold-shock DEAD box protein A homolog; AltName: Full=ATP-dependent RNA helicase deaD homolog gi|27904223|gb|AAO27056.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 602 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 175/573 (30%), Positives = 288/573 (50%), Gaps = 44/573 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL++ GYV + +Q A + ++ KDVL AQTGSGKT AF L L + + Sbjct: 17 IITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLD----- 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L + PTRELAVQV K GV V GG + + L+ G I+V Sbjct: 72 -VRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKGPQIIV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ + L++S+L ++VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 131 GTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI +++ + K+ + I S DI ++ + + +A++ L I+ Sbjct: 191 PEAIRRISRRFMKNPKEIRIQSNITTRPDIQ-QSYWMVYGKKTDALIRFLEAEDFSATII 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + ++VL + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 250 FVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLD 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + VI+ ++ + E+ +HR GRTGRAGRKG ++ + +R + R N+S+ Sbjct: 310 VDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISE 369 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV--LLAKHDP-------EKIAAGF 420 P + + +R ++ Q IQ D K + + LL K P E +AA Sbjct: 370 VNLPKSDFLSKRRLEKFAQKV----QIQLDSKDLHEYRGLLPKLQPNNNSLDIESLAAAL 425 Query: 421 LRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFK----VGGGSRDNFKGSSWFSLSV 473 L++ R+ + PE I + +D +R+++ +K V +RD K + + V Sbjct: 426 LKMAQGERSLIVKPESIVRARHLKIKDTYRNNN--YKSLNYVSRYNRD--KNVDLYRIDV 481 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR----RTVKLDK 529 G E R ++ + I+ + IG +R+ + + +E+ + L RT L+K Sbjct: 482 GRNDGVEVRHIVGAIANEGDISSRKIGNVRLFSNYSTIELPKGLSNTLPKTFIRTKILNK 541 Query: 530 GIQLKYLGGEK--------PDFRGYKSSGFKSK 554 I +K L D + Y S+ +SK Sbjct: 542 FINIKLLYNSNFKGNYNDIKDVKVYNSNKLRSK 574 >gi|309972622|gb|ADO95823.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2846] Length = 613 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 188/579 (32%), Positives = 287/579 (49%), Gaps = 30/579 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A ++VGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DI+ V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLSV 473 + + L P + P+ R D R R KG + + V Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNDRGDRRENPRSAERRGECKGYGNPQPMDLYRIEV 483 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKLD 528 G E R ++ + IN + IG I++ D T VE+ G+ +LL+ +T L+ Sbjct: 484 GRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFGKTRVLN 542 Query: 529 KGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 K +Q+ +LG K D RG S F K G R +R Sbjct: 543 KQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|253568946|ref|ZP_04846356.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6] gi|251840965|gb|EES69046.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6] Length = 647 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 180/534 (33%), Positives = 277/534 (51%), Gaps = 44/534 (8%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I +A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQIDVKN------RVPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S + +V+DEADEML++GF D I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 PK+R L+FSAT+SP I ++KNY ++A + I +N S++ + A V D+ A Sbjct: 173 DVPKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------- 407 + + R + P+ + I E+ +++ + L+ ++ +E+++ D + Sbjct: 353 KLREIERIIGKKFIAGEMPTGKQICEKQLIKVIDE---LEKVKVNEEEITDFMPEIYRKL 409 Query: 408 --LAKHDPEKIAAG-----FLRIHRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGS 459 L+K D K FL +R EEI TP + R+R DSR GS Sbjct: 410 EWLSKEDLIKRMVSHEFNRFLDYYR----DREEIETPTDI---RERNTRDSRE----RGS 458 Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 R G + +++G L+ +L S+ R +G I + + +F EV Sbjct: 459 RKAAPGFTRLFINLGKMDSFFPSELISLL-NSNTRGRIELGRIDLMKNFSFFEV 511 >gi|51245542|ref|YP_065426.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54] gi|50876579|emb|CAG36419.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54] Length = 632 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 183/549 (33%), Positives = 267/549 (48%), Gaps = 51/549 (9%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + G+ T +QE + L D++ AQTG+GKT AFGL L + N FS Sbjct: 70 LVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLN-----NIDFSKKCV 124 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL +APTRELA QVG L G V V GG S + L+ GA +VVGTPGR Sbjct: 125 Q-ALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRRGARVVVGTPGR 183 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D IR L + LK +VLDEADEML +GF DDIE IL +PK R+ ++FSAT+S + Sbjct: 184 LLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFSATLSSRVM 243 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 ++A Y ++I+ + S I+ R L+ SD+ AI + ++A++F TR Sbjct: 244 SIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVESALIFARTR 303 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 A+VS L F LSG+LSQ+ R+ L + G+ +V +ATDVAARG+D+ D+ Sbjct: 304 ATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAARGLDIDDIS 363 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 V + +L +PE +HR GRTGRAGR G ++ ++ + R+ + ++ P+ Sbjct: 364 HVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGKKLIKGELPT 423 Query: 375 VEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAK-HDPEKIAAGFLRIHRAGLCAP 431 VE I E + L+ D E+++V+ L+ + DP +AA L+I R Sbjct: 424 VEQIEEHRNTQFLERLDVWIRRGRCRGEREIVEALVEQGMDPLDVAAAALKIVRKDETK- 482 Query: 432 EEITPVSLV----SGRDR-----------------FRDDSRAFKVGGGSRDNF------- 463 I P+ V GR+R R DSR + G D F Sbjct: 483 RPIDPIKPVIEDAGGRNRKRGDRNDRGANGRGDRGGRSDSRGGRPQGRRDDRFAKGGDRG 542 Query: 464 ---KGSSW----------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510 KG +L G K ++ L +GI+ + +G IR+ + Sbjct: 543 PKKKGDDVRQVSDKDMVPLTLDAGKKDGVAVNHIVASLSHFAGISSRELGKIRINETHSS 602 Query: 511 VEVSADGVD 519 ++V VD Sbjct: 603 IDVPKGLVD 611 >gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2] gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense DCB-2] Length = 530 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 166/508 (32%), Positives = 263/508 (51%), Gaps = 34/508 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +ALSE G+ + +Q+A + + D++ AQTG+GKT AFG+ + + N +F Sbjct: 20 QALSEMGFEEPSPIQKAAIPVAMDGVDLIGQAQTGTGKTAAFGIPICEKV---NPKFQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL + PTRELAVQV E+ + + GG S+ R+ R L+ G+ +VVGTP Sbjct: 75 -AVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRFGSQVVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISP 191 GR+ DH+ L + ++K VVLDEADEMLD+GF +DIE IL PK+ R++++FSAT+ P Sbjct: 134 GRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKEERQVMLFSATMPP 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNA 247 I LA+NY V ++ + I+ V RD +A+ I+ A Sbjct: 194 EIKKLAQNYMHQPKSVAVSRDELTVPLIEQ----VFYEARDKIKVDALCRIIDMEDIGQA 249 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V L + AL G+LSQQ+R ++ RDG+ + +ATDVAARG Sbjct: 250 IIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVAARG 309 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ ++ VI+ ++ +PE+ +HR GRTGRAGRKG ++ ++ R+ + R + Sbjct: 310 LDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIERLIKTRI 369 Query: 368 VWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 + + P++ + ER A+ + + S G + +V LL ++D +AA L+ Sbjct: 370 IRKELPTLADVSERQAENLKNQLVKILQRSHLGTYRSIVGSLLEEYDSMDVAAAALKF-- 427 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485 V V R DD + G+ G +++G Q+ + ++ Sbjct: 428 ----------AVEGVEERSEEEDD-----IAFGNTGAAPGMVRLFMNIGRLQQVRPQDIV 472 Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + SGI IG I + TFVE+ Sbjct: 473 RWIADESGIPGNIIGMINIYDKFTFVEI 500 >gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4] Length = 499 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 251/454 (55%), Gaps = 20/454 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + ++++ G+ T +Q + L KD++ AQTG+GKT AFG+ L + + Sbjct: 8 NLSPSMLKSINRMGFEEATPIQAGTIPLSLEGKDIIGQAQTGTGKTAAFGIPLVEKIDTK 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N L IAPTRELA+QV EL + V V GG ++R+ R ++ G Sbjct: 68 NTNVQ------GLIIAPTRELAIQVSEELYKVGYDKRVRVLAVYGGQDINRQIRAMKKGP 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGRL DHI + L + + +VLDEADEML++GF DDIE IL + P+ R+ L+F Sbjct: 122 HIIVGTPGRLLDHINRRTLKLDQVHTLVLDEADEMLNMGFIDDIESILKNVPEGRQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +A+N+ + V + S+ S ID V ++ + + +L + Sbjct: 182 SATMPGPIRKIAENFMTNPETVKVKSKEMTVSLIDQYFVKAQEREKFDILARLLDTQSPE 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AIVF T+ V +K L+ +Q + G+LSQ +RS+ L+ ++GR V +ATDVAA Sbjct: 242 LAIVFGRTKRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362 RG+D+ + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M R E+ Sbjct: 302 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEQT--- 358 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLF--LDSIQGDE-KKMVDVLLAKHDPEKIAAG 419 N + PSV E QR+ ++ L ++S DE +K+V LL ++ PE++ A Sbjct: 359 TNKRMTPMRPPSVNEALE-GQQRLAKEKLVEAINSNGLDEYEKLVAELLGEYTPEQVIAA 417 Query: 420 FLRIH-RAGLCAPEEIT---PVSLVSGRDRFRDD 449 L++ + P EIT P+ R R +D Sbjct: 418 SLKLFTKEPDKTPIEITEERPLPFKGERPRRNND 451 >gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM 17374] Length = 634 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 156/412 (37%), Positives = 227/412 (55%), Gaps = 9/412 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + L ++G+ T +Q+ + L EK DV+ A+TG+GKT AFG+ + T+ E+D Sbjct: 18 DVLKKKGFEEPTQIQKECIPLLLHEKTDVIGQARTGTGKTAAFGIPILETV-DEHD---- 72 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S AL +APTRELAVQV E+ + +G+ +A GG S+ + R L G IVVGT Sbjct: 73 -STVQALILAPTRELAVQVADEISSMRPSSGLSIAAIYGGASMSLQLRQLHRGVQIVVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ LN+ +LK +VLDEADEMLD+GF +DIE IL +P +RML FSAT+ Sbjct: 132 PGRVQDHLDRGTLNLENLKFMVLDEADEMLDMGFIEDIENILSRTPADKRMLCFSATMPA 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA+ + KD V + S++ + + V SD+ A+ ++ +VFC Sbjct: 192 PIQNLAQRFMKDPKIVRVVSQDMTNLLTNQVCYEVRESDKLEALCRVIDVAVDFYGLVFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ T+ L AL G+LSQ++R L R + V +ATDVAARGID+P Sbjct: 252 RTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVLVATDVAARGIDIP 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 DL VI+ + NPE +HR GRTGRAGR G +V I + + + R A+ + E Sbjct: 312 DLTHVINYSIPQNPEAYIHRIGRTGRAGRSGTAVTFITPREYSKLKYIQRIAHTEIHRET 371 Query: 372 APSVEAIRERDAQRILQDPLFLDSI-QGDE-KKMVDVLLAKHDPEKIAAGFL 421 P++ I E RI + L ++ + D+ + + LL H E + A L Sbjct: 372 VPAISDIMEAKRNRIATETESLLTVAESDQFRPLARHLLESHAAEDVVAALL 423 >gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 513 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/347 (40%), Positives = 206/347 (59%), Gaps = 6/347 (1%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE+ P+++ ALS++GYV+ T +Q + L+ DV+ +AQTG+GKT F L + Sbjct: 38 FEDFGLAPEIL-RALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQ 96 Query: 61 TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 L+A N SPA P+ AL + PTRELA QV ++ T + V GGV + + Sbjct: 97 LLMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQT 156 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L++G IV+ TPGRL DHI+ K LN+S + +V+DEAD MLD+GF D++ I++ PK Sbjct: 157 AALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPK 216 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ LMFSAT SP I LA + KD V + +A N ++ V D+ +A+ I Sbjct: 217 QRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIVYKVEEGDKGDAVSYI 276 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 +R G K IVF +T+ SR + L + A+ G+ SQ ER AL+ ++G V Sbjct: 277 IRERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMAALEAFKNGTIEVL 336 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+D+ +L VI+ +L N E+ +HR GRTGRAG G ++ Sbjct: 337 VATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI 383 >gi|310829374|ref|YP_003961731.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612] gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612] Length = 547 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 162/514 (31%), Positives = 275/514 (53%), Gaps = 20/514 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + G+V++T +QE + + D++ +QTG+GKT+AF + + E Sbjct: 15 AIDDMGFVDMTEIQERAIPRLMEGGDLIGKSQTGTGKTMAFAIPAIEKIDPE------LR 68 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L + PTRELA+QV E + Y+ + VVAV GG S+ + RDL++GA IVVGT Sbjct: 69 KPQVLVLLPTRELALQVSEEFRKVLKYSHSIKVVAV-FGGASIENQIRDLKSGAQIVVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R K L + L VLDEADEML++GFR+DIE ILD+ + ++FSAT+ Sbjct: 128 PGRVMDHMRRKTLKFNALTMAVLDEADEMLNMGFREDIELILDAVDHDVQTVLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ YQK+ + I+ + I+ + ++ ++ A+ +L + + +++FC Sbjct: 188 PILKIAETYQKNPTMIEISPKTMVAPSIEQKYFNISDQNKFEALTRLLDVYKPQRSLIFC 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V T+ L E + V + G++ Q R N L+ GR ++ +ATDVAARGID+ Sbjct: 248 NTKHYVDEITENLQELGYSVDKIHGDMRQVSRLNVLKRFSQGRLKILVATDVAARGIDVD 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 D+++V + ++ N E +HR GRTGRAG+ G+S+ + Q + ++ S+ + Sbjct: 308 DVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARSRDQFKLRKITDYTKKSIERDL 367 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPEKIAAGFLRIHRAG 427 P+ E I + ++ L + +G+ ++ + ++ ++ E IAA L+ + Sbjct: 368 IPTSEVINDIKIAH-FKERFKLKAEKGELERYIAIIQELEEKGYEAEFIAAVLLQ-AQLP 425 Query: 428 LCAPEEITP---VSLVSGRDRFRDDSRAFKVGGGSRDNF--KGSSWFSLSVGSKQKAEAR 482 L E++ R RD R +V GG +F + + +SVG K K + R Sbjct: 426 LSDAEDLNTEFKKRGRREGRRERDGKRRREVKGGKGKSFGPEKTKRLFISVGEKDKVQKR 485 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ +C I ++G I + TFV+V D Sbjct: 486 DILGAICGECNIASSTVGNIDMYNKFTFVDVDVD 519 >gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM 17241] gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM 17241] Length = 572 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 184/580 (31%), Positives = 306/580 (52%), Gaps = 57/580 (9%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE+I P+++ +A+S+ Y T +Q + ++ DV+ + TG+GKT AFG+ Sbjct: 6 FEDIGLSPELV-QAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPAVE 64 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119 + S AP L ++PTRELA+Q+ E+ ++ K GV VA GG + + R Sbjct: 65 RIE------SGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIR 118 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ A+IV+GTPGR+ DH+R L + L+ VVLDEADEML++GF DDI+ IL +P Sbjct: 119 ALR-AANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDT 177 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ ++FSAT+ PAI + + D V+I + R + ++ V + + +A+ +L Sbjct: 178 RQTVLFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLL 237 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 +YH K A+VFC+T+A V T+ L++H F+ + + G++ Q R+ +Q RDG+ R+ + Sbjct: 238 QYHDPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILV 297 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER- 358 ATDVAARGID+ ++E V + ++ E+ +HR GRTGRAGR GMS ++ Q R Sbjct: 298 ATDVAARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIRQ 357 Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEK----KMVDVLLAK 410 L R N + P P + I RE+ A R+ + +++ DE + +D + A+ Sbjct: 358 LRRFINADIREAPLPIGDEIVRKKREKFAARVAR------TLEADEYGKWGEQLDAIAAE 411 Query: 411 H--DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468 D IA ++ A +++ PV + V GG R + + Sbjct: 412 RGCDMRDIACALAQMIAA---RDKKLIPVLKIPA-------PGERPVRGGRRVVLRADA- 460 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLR--RTV 525 G Q + + +SG+ ++IG I + D + +E+ D + +L R+ Sbjct: 461 -----GRAQNVTPANFVAAIADASGLPARAIGKIDIFEDSSLIELYENDALTVLEAMRST 515 Query: 526 KLDKGIQLKY-LGGEKPDF--RGYKSSG-----FKSKNSQ 557 ++ +G+++ + L EKP + RG + G F+ K SQ Sbjct: 516 RI-RGLEVHFALTSEKPRYAARGGVTCGREKPFFRPKPSQ 554 >gi|29348712|ref|NP_812215.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|29340618|gb|AAO78409.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] Length = 647 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 180/534 (33%), Positives = 276/534 (51%), Gaps = 44/534 (8%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I +A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQIDVKN------RVPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S + +V+DEADEML++GF D I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 PK+R L+FSAT+SP I ++KNY ++A + I +N S++ + A V D+ A Sbjct: 173 DVPKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------- 407 + + R + P+ + I E+ +++ + L+ ++ +E+++ D + Sbjct: 353 KLREIERIIGKKFIAGEMPTGKQICEKQLIKVIDE---LEKVKVNEEEITDFMPEIYRKL 409 Query: 408 --LAKHDPEKIAAG-----FLRIHRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGS 459 L+K D K FL +R EEI TP R+R DSR GS Sbjct: 410 EWLSKEDLIKRMVSHEFNRFLDYYR----DREEIETP---TDSRERNTRDSRE----RGS 458 Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 R G + +++G L+ +L S+ R +G I + + +F EV Sbjct: 459 RKAAPGFTRLFINLGKMDSFFPSELISLL-NSNTRGRIELGRIDLMKNFSFFEV 511 >gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus proteolyticus MRP] gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus MRP] Length = 612 Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 156/449 (34%), Positives = 239/449 (53%), Gaps = 17/449 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M E I + L+ERG + +Q L L+ +D++ A+TG+GKT+AF L + Sbjct: 1 MNFNELIAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQ 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRER 118 L +R + P A+ +APTRELA QV E E +TG + V GG + + Sbjct: 61 GLEPSRER---SRLPRAIVVAPTRELARQVAAEFE----QTGRELTVLTVYGGAAYGPQE 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ G +VVGTPGRL DH+ L++ +K VLDEADEML +GF D IE IL ++P+ Sbjct: 114 TALRRGVDVVVGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPE 173 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIV 236 R+ L+FSAT++P I L+ Y D + V++ E + + +++ V V S R + Sbjct: 174 GRQTLLFSATLTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRVGRS-RTRVLA 232 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 ++L + + AIVF T+ L F+ AL G+L+Q +R AL R GR Sbjct: 233 DLLTVYNPEKAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTS 292 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 + +ATDVAARG+D+P+++LV+ L +PE+ +HRSGRTGRAGR G ++ + QR Sbjct: 293 ILVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDREQRDI 352 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS-IQGDEKKMVDVLLAKHDPEK 415 L R V P P+ ++E A + +D+ + + LL + E Sbjct: 353 NGLERVTGVRFTERPLPTPREVQEASAHASSEMLRRVDAEAAAGFMEQAEALLEEMGAEA 412 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444 +A +I +G+ P+ P SL+SG + Sbjct: 413 LARALAKI--SGVTEPQ--APASLLSGEE 437 >gi|298387076|ref|ZP_06996630.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 1_1_14] gi|298260226|gb|EFI03096.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 1_1_14] Length = 647 Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 180/534 (33%), Positives = 276/534 (51%), Gaps = 44/534 (8%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I +A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQIDVKN------RVPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S + +V+DEADEML++GF D I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 PK+R L+FSAT+SP I ++KNY ++A + I +N S++ + A V D+ A Sbjct: 173 DVPKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------- 407 + + R + P+ + I E+ +++ + L+ ++ +E+++ D + Sbjct: 353 KLREIERIIGKKFIAGEMPTGKQICEKQLIKVIDE---LEKVKVNEEEITDFMPEIYRKL 409 Query: 408 --LAKHDPEKIAAG-----FLRIHRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGS 459 L+K D K FL +R EEI TP R+R DSR GS Sbjct: 410 EWLSKEDLIKRMVSHEFNRFLDYYR----DREEIETP---TDSRERNTRDSRE----RGS 458 Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 R G + +++G L+ +L S+ R +G I + + +F EV Sbjct: 459 RKAAPGFTRLFINLGKMDSFFPSELISLL-NSNTRGRIELGRIDLMKNFSFFEV 511 >gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase domain-containing protein [Salinispora arenicola CNS-205] gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola CNS-205] Length = 574 Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 168/509 (33%), Positives = 265/509 (52%), Gaps = 19/509 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY T +Q + P L +D+L A TG+GKT AF L L + + P P+AL Sbjct: 35 GYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLQRMSVDR----PTGDPVAL 90 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELAVQV + G V GG + R+ R L +G +VV TPGR DH Sbjct: 91 VLVPTRELAVQVSEAFHRYGKELGTRVLPIYGGQPIGRQLRALDSGVDVVVATPGRALDH 150 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I L + + VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FSAT+ I +A+ Sbjct: 151 IARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVLFSATMPARIDGMAR 210 Query: 199 NYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 + D +R+ IA E + + A LVA + + A+ +L AIVFC +R Sbjct: 211 AHLTDPIRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDIESPTAAIVFCRSRE 270 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 V R T+ + ++ AL G +SQ++R + +R G A + +ATDVAARG+D+ L Sbjct: 271 EVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLMATDVAARGLDVEQLSH 330 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375 V++ ++ S PE+ +HR GR GRAGR+G+++ + R + + R + + P+V Sbjct: 331 VVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIERVTGQRITIDKIPTV 390 Query: 376 EAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI-HRAGLCAP 431 +R R Q L++ L D ++ + +V+ L + D ++A +R+ H A L Sbjct: 391 ADLRNRRLELTQAALRESLLEDDLE-PFRVIVESLSDEFDLMEVALAAVRLAHEATLPGA 449 Query: 432 ----EEITPVSLVSGRD-RFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 EEI VS+ R R + R + G R G++ + +G + + L+ Sbjct: 450 LDEEEEIPQVSVRPSRTGRPGPEGRGDRRSG--RPRGTGTTQVFVGLGRRAGVRPQDLVG 507 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + +G+N + IG+I + + VEV A Sbjct: 508 AITGETGMNGRDIGSIEIADRFSLVEVPA 536 >gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] Length = 564 Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 162/526 (30%), Positives = 263/526 (50%), Gaps = 47/526 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + A+++ G+ T +Q + L D++ AQTG+GKT AFG+ + + D Sbjct: 15 VQHAIADMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEKIDSHIDSIQ 74 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 L + PTRELA+Q EL L K G+ + GG + R+ L+ I++ Sbjct: 75 ------VLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMALKKRPQIII 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+R K L + LK +VLDEADEML++GFR+DI+ IL+ P+ R+ ++FSAT+ Sbjct: 129 GTPGRVMDHMRRKTLKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQTILFSATM 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I L K YQKD V + IA + I+ + V S + + ++ + K ++V Sbjct: 189 PKEILELTKKYQKDPVHIKIAHKELTVPSIEQYYLEVKESAKLEVLSRLIDTNDIKLSLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V T L F AL G++ Q+ R + + R G + IATDVAARGID Sbjct: 249 FCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDILIATDVAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + D+E V + +L ++ E +HR GRTGRAGR G + I + + R ++V Sbjct: 309 VDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAFTFISGREMYKLRDIQRYTKSTIVA 368 Query: 370 EPAPSVEAIRERDAQRI---LQDPL--------------FLDSIQGDEKKMVDVLLAKHD 412 PS+ + E+ I L+D L F+D+I + ++ + + D Sbjct: 369 MKPPSLNEVEEKKMLNILKTLKDNLKDDSISKFVSHIERFIDTINNESEEQGENFVTSLD 428 Query: 413 PEKIAAGFLRIH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 +AA L+++ ++G P E+ + +D R F Sbjct: 429 ---VAAALLKMYGEQSG-NLPNEVNEIDNAVEPGSNKDMVRLF----------------- 467 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +++GS+ K + + ++ L S+G+ + +GAI + +FVEV D Sbjct: 468 INIGSESKIQPKHIIESLVASTGLPGKLVGAIDIFDRYSFVEVPKD 513 >gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51] gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 537 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 163/508 (32%), Positives = 260/508 (51%), Gaps = 34/508 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +ALSE G+ + +Q+A + + D++ AQTG+GKT AFG+ + + N +F Sbjct: 27 QALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIPICEKI---NPKFQ-- 81 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL + PTRELAVQV E+ + + GG S+ R+ R L+ G+ +VVGTP Sbjct: 82 -AVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRFGSQVVVGTP 140 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISP 191 GR+ DH+ L + ++K VVLDEADEMLD+GF DDIE IL PK+ R++++FSAT+ P Sbjct: 141 GRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVDDIETILKQVPKEERQVMLFSATMPP 200 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNA 247 I LA+NY V ++ + I+ V RD +A+ I+ A Sbjct: 201 EIKKLAQNYMSQPKSVAVSRDELTVPLIEQ----VFYETRDKIKVDALCRIIDMEDIGQA 256 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V L + AL G+LSQQ+R ++ RDG+ + +ATDVAARG Sbjct: 257 IIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVAARG 316 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ ++ VI+ ++ +PE+ +HR GRTGRAGRKG ++ ++ R+ + R + Sbjct: 317 LDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIERLIKTRI 376 Query: 368 VWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 V + P++ + ER A+ + + S G + +V LL ++D +AA L+ Sbjct: 377 VRKELPTLADVSERQAENLKNQLVKILQRSHLGTYRSIVGSLLEEYDSMDVAAAALKF-- 434 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485 + ++ G+ G +++G Q+ + ++ Sbjct: 435 ---------------AVEGVEERTEEEDELTFGNTGAAPGMVRLFMNIGRLQQVRPQDIV 479 Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + SGI IG I + TFVE+ Sbjct: 480 RWIADESGIPGNIIGMINIYDKFTFVEI 507 >gi|225374820|ref|ZP_03752041.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM 16841] gi|225213389|gb|EEG95743.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM 16841] Length = 531 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 152/514 (29%), Positives = 266/514 (51%), Gaps = 33/514 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQV+ A+ E G+ T +Q + + DV+ AQTG+GKT +FG+ + + N Sbjct: 13 PQVL-RAIKEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHKVDPNNK 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAH 126 + + ++PTRELA+QV E+ L GV + GG ++R+ + L+ GA Sbjct: 72 KTQ------VIILSPTRELAIQVSEEIRKLSKYMHGVKILPVYGGQDINRQIKALKGGAQ 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMF 185 I++GTPGR+ DH+R K + + +VLDEADEML++GFR+DIE IL+ P++ R+ ++F Sbjct: 126 IIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + K YQ DAV + + + I+ V D+ + +L Y+ K Sbjct: 186 SATMPKPILDITKKYQHDAVTIKVVKKELTVPSIEQYYYDVKRKDKTEVLTRLLDYYNPK 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++VFC+T+ V ++ L + L G++ Q +R ++ R GR + IATDVAA Sbjct: 246 LSLVFCNTKKMVDELSEELKSRGYMAEGLHGDMKQAQRDRVMKAFRSGRVEILIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ D+E V + ++ + E +HR GRTGRAGR G + + + + + R Sbjct: 306 RGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKT 365 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAK-----HDPEKIAAG 419 ++ P PS + + + A++++Q + I+ ++ K+M++++ + + IAA Sbjct: 366 KILAMPIPSSDDVAQIKAEKVMQG--IGEIIENEDLKEMIEIIEKQVNDSDYTAMDIAAA 423 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 FL+ G+ +D ++ + +G +++G K + Sbjct: 424 FLK----------------QALGQVNLENDRENGEIDWDNTGAEEGMVRLFINIGKKDRV 467 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + ++ + SG+ + +GAI + TFVEV Sbjct: 468 KPGDILGAIAGESGMPGKLVGAIDMYDKYTFVEV 501 >gi|154249323|ref|YP_001410148.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153259|gb|ABS60491.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum Rt17-B1] Length = 571 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 155/532 (29%), Positives = 276/532 (51%), Gaps = 38/532 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+ ++GY T +Q+ +L L +KD++ AQTG+GKT AFG+ L + + ++F A Sbjct: 32 AIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLERIDFKANKFVKA 91 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + + PTRELA+Q+ EL+ L V + GG S+ ++ +DL+ G IVVGTP Sbjct: 92 -----IIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKDLEKGVDIVVGTP 146 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++SH++ +VLDEAD MLD+GF DD+ I+ + + +R +FSAT+ Sbjct: 147 GRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFLFSATMPKE 206 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + K+ + V+ + + + V D+ + I+ + IVFC Sbjct: 207 IVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIIDMNPDFYGIVFCQ 266 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V +K L + + L G+ SQ +R L R + R+ + TDVAARGID+ Sbjct: 267 TKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDVAARGIDIDG 326 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ + +PE +HR GRTGRAG+KG ++ + ++ R+ R A ++ + Sbjct: 327 LTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVKRFAKAKIIKDSI 386 Query: 373 PSVEAIRERDAQRILQ---------DPLFLDSIQGDEKKM-----VDVLLAKHDPEKIAA 418 P VE I R +++L + L+ + Q ++M V++LL +KI Sbjct: 387 PQVEDILNRQLEKLLDTLKNAPKVSNELYKRAAQQIIEEMGPTEAVEMLLHTLIKDKID- 445 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 + R G ++ P + GR++ G +++ GS +++GS + Sbjct: 446 ----VSRYG-----DVKPKNFSKGREQ--------NFGDSNKNVDSGSVRLFVNMGSSKG 488 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530 + + L+ + +G+ +I ++V + +F++VS +++ +T+ +G Sbjct: 489 LDKKKLVEFISERTGVEPSNINNVKVFENFSFIDVSEFDAEVILKTLNPKRG 540 >gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas naphthalenivorans CJ2] Length = 487 Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 214/369 (57%), Gaps = 4/369 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 ++ + + A++E GY +T +QE + L+ KDV+ +AQTG+GKT AF L L ++ Sbjct: 9 SLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALPLLQRMMKH 68 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122 EN SPA P+ AL + PTRELAVQV +++ LYAK T + AV GG+ + + +L+ Sbjct: 69 ENASTSPARHPVRALVLLPTRELAVQVAEQVK-LYAKYTNLNSAVVFGGMDMKPQTLELK 127 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G ++V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+R Sbjct: 128 KGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRIT 187 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT SP I LA ++ +D V + +A N + ++ V D+ A+ IL+ Sbjct: 188 LLFSATFSPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSVGADDKRRALHQILKAR 247 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K A VF +++ +R + L + AL G+ SQ ER AL+ + G + + TD Sbjct: 248 DLKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALESFKSGEVDLLVCTD 307 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ D+ V + ++ N E+ +HR GRTGRAG G++V + + QR + + Sbjct: 308 VAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVAASDQRLVTDIEKL 367 Query: 363 ANVSVVWEP 371 + EP Sbjct: 368 IKTKIEIEP 376 >gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 610 Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 211/375 (56%), Gaps = 9/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L +++ + Sbjct: 20 ALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNSIDPNTN------ 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQV E YAK G+ V GG S+H++ L+ G I+VGT Sbjct: 74 APQILVLAPTRELAVQVA-EAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRRGPQIIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + LKA+VLDEADEML +GF DDIE+IL+ +PK+R++ +FSAT+ Sbjct: 133 PGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A Y + V V IA+ I+ R V V+ ++ A+V +L + I+F Sbjct: 193 QIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGIIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G + IATDVAARG+D+ Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGTLDIIIATDVAARGLDVE 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R + Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPMD 372 Query: 372 APSVEAIRERDAQRI 386 PS E + ER R+ Sbjct: 373 VPSPETVTERRLSRL 387 >gi|293401901|ref|ZP_06646041.1| DEAD/DEAH box family ATP-dependent RNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304559|gb|EFE45808.1| DEAD/DEAH box family ATP-dependent RNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 580 Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 164/534 (30%), Positives = 273/534 (51%), Gaps = 42/534 (7%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P I +A+ E GY N T +Q + L KDVL + TG+GKT AFG+ Sbjct: 1 MTTFNELPISSEIMKAVEEMGYENATDIQAQSIPCILEGKDVLGRSNTGTGKTAAFGIPA 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRE 117 ++ N +F P AL I PTREL QV EL ++ K GV + GG + R+ Sbjct: 61 IEKVIPGN-KF-----PNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQ 114 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 + L+ G IVVGTPGR+ DH+ + L + + ++LDEADEML++GF++DIE IL P Sbjct: 115 IQLLKRGCGIVVGTPGRIMDHLNRRTLKLQDVNMIILDEADEMLNMGFKEDIEEILSMMP 174 Query: 178 --KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 + + ++FSAT AI + + +QKD VRV I S R ++ + NA+ Sbjct: 175 ADNEHQTILFSATWPQAILKITEQFQKDPVRVEIKSSQRTIDTVEQIYYEAPRGKKANAL 234 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +L ++ ++FC+T+ V + L +H + +L G++ Q+ RS ++ R+G + Sbjct: 235 RVLLNHYDPDLCMIFCNTKKMVDELCEELNKHDIKATSLHGDMKQEFRSRVMEQFRNGTS 294 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + IATDVAARGID+ D++LV++ ++ + E +HR GRTGRAG+KG+++ +I QR Sbjct: 295 PILIATDVAARGIDVDDIDLVVNFDIPQDMEYYIHRVGRTGRAGKKGLAITLISGGKQRG 354 Query: 356 A-ERLFREANVSVVWEPAPSVEAIRE--RDA-----QRILQDPLFLDSIQGDEKKMVDVL 407 A + + R ++ P+ + E R+A + + + +SI+ M D + Sbjct: 355 AIKDVIRYTKTNITRHALPTSAQMMEANRNAFIAKVKEACDEGITEESIEIANALMADGI 414 Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 E I + + ++ E+ + R+ D A Sbjct: 415 AL----ENIISALISMNYKN-----EVIDIEEEENVKRYASDFDAI-------------- 451 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 SVG + ++ + G++ ++IG I V+P+ + V+++AD VD++ Sbjct: 452 TLKFSVGRTHGIQPGNIVAAIIEECGMSPKAIGRIDVRPNFSLVDIAADKVDIV 505 >gi|218678929|ref|ZP_03526826.1| DEAD/DEAH box helicase domain protein [Rhizobium etli CIAT 894] Length = 340 Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 125/265 (47%), Positives = 177/265 (66%), Gaps = 8/265 (3%) Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S ++P N +R+AERL Sbjct: 1 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 60 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A +S W PS E + ERD +R+L DP+F ++ Q +E+ +V LL+ H EK+AA F Sbjct: 61 DNAGISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAF 120 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478 LR++R APE++ V++ G R RD++ ++ G R++F S WFS+SVG KQ Sbjct: 121 LRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 180 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534 AE RWL+PMLCR+ + ++ IGAI++QP+ TFVE++A + + L++GI++ Sbjct: 181 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 240 Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558 L G PDF R + K+S+D Sbjct: 241 KLSG-TPDFSRAPSPKSYAGKSSRD 264 >gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus DSM 2032] Length = 552 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 169/518 (32%), Positives = 266/518 (51%), Gaps = 26/518 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + ++E G+ + T +Q+A + L +D++ AQTG+GKT AFGL L R +P Sbjct: 17 QTVTELGFTDPTPIQQAAIPLLLEGRDLIGQAQTGTGKTAAFGLPLLQ-------RITPR 69 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + AL +APTRELA+QV ++ + G+ V GG + ++ R L+ G ++VGT Sbjct: 70 QQGVQALVLAPTRELAIQVAEAIQRYGQQRGITVLAVYGGQAYQQQIRSLRQGVEVIVGT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + L+++ ++ VVLDEADEML +GF +DIE ILD P +R+ ++FSATIS Sbjct: 130 PGRLLDLMNQGTLDLTTVRTVVLDEADEMLSMGFVEDIELILDRIPAERQTMLFSATISK 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L+ Y +D V+I + + I+ R LV D+ A+ + +A++F Sbjct: 190 RVLGLSARYLRDPETVSITPKQLTGATIEQRYYLVNQQDKVAALTRLFEMETIDSALIFT 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR L F AL+G+LSQ R L R+G+ +V +ATDVAARG+D+ Sbjct: 250 RTRIGTGELANQLTSRGFPAEALNGDLSQDARIQVLNRFRNGQVKVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 D+ V + +L +PE +HR GRTGRAGR+G+++ ++ + R+ A + Sbjct: 310 DISHVFNFDLPDDPEVYVHRVGRTGRAGREGIAISLLTPKDRWILRRIEDYARYKLTRAE 369 Query: 372 APSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAK-HDPEKIAAGFLRIHRAG 427 P+++ I E Q +L + L E+++V++LL H E IAA L++ R G Sbjct: 370 LPTIQQI-ENHRQALLMEQLEVWIRRGRCRREREVVEMLLQTGHQAEDIAAAALKLAR-G 427 Query: 428 LCAPEEITPVSLVS---------GRDRFRDDSRAFKVGGGSR---DNFKGSSWFSLSVGS 475 I P++ + DRF G G R D + L+VG Sbjct: 428 EEKKRPIDPITPIKEEQFNPRERKNDRFPRRGGQAGTGPGGRRGHDRDRDMVPLRLNVGR 487 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++ L SG+ +G IR++ D T V+V Sbjct: 488 ADGVGVNHVVASLAHYSGVAAVQLGKIRLEADHTLVDV 525 >gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago truncatula] Length = 753 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 141/390 (36%), Positives = 225/390 (57%), Gaps = 14/390 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + ++L +RG L +Q A+L P L +D++ A+TG+GKT+AFG+ + + L Sbjct: 114 DLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIINGLDDG 173 Query: 66 NDR--FSPASAPLALAIAPTRELAVQVGRELE--WLYAKTGVVVAVCI-GGVSVHRERRD 120 D +S P AL +APTRELA QV +E++ Y KT VCI GGVS ++ Sbjct: 174 QDSGPYSRRRLPRALVLAPTRELAKQVEKEIKESAPYLKT-----VCIYGGVSYVTQQSA 228 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G +VVGTPGRL D I G L +S ++ +VLDEAD+ML +GF +D+E IL+ P KR Sbjct: 229 LSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKLPAKR 288 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNI 238 + ++FSAT+ + LA+ Y + + +++ E + I A+ + + + ++ Sbjct: 289 QSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDL 348 Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + Y IVF T+ + L + AL G++SQ +R L R G+ V Sbjct: 349 ITVYAKGGKTIVFTQTKRDADEVSLALTNSITSE-ALHGDISQHQRERTLNGFRQGKFTV 407 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVA+RG+D+P+++L+IH EL ++PE +HRSGRTGRAG+ G ++ + + +R Sbjct: 408 LVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGSQRRTVR 467 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387 L R+ + APSVE + E A++++ Sbjct: 468 SLERDVGCKFEFVNAPSVEDVLESSAEQVV 497 >gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9] gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9] Length = 442 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 128/337 (37%), Positives = 204/337 (60%), Gaps = 2/337 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I E +S+ GY T +Q P L +D++ +AQTG+GKT AF L + + L+ + N Sbjct: 15 ILENISKTGYEYATPIQALSFEPILEGRDIMGAAQTGTGKTAAFTLPILNRLIPKANYST 74 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ L + PTRELA Q+ + + + ++ GGV ++ ++++L GA IV Sbjct: 75 SPAKHPVRMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQKQELMRGADIV 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DHI + +N++ ++ +VLDEAD MLD+GF D+ IL + PK R+ L++SAT Sbjct: 135 IATPGRLLDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRILSNLPKSRQSLLYSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I +LA+ + + V + +AS N S I V+ SD++ A+V IL N I Sbjct: 195 FSENIRSLAQKFLNNPVEITVASNNSTASTIKQEVYSVSESDKNAALVYILTSRAFNNVI 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F + + + ++L + V +L G+ SQ ER+ AL + + + + +ATDVAARG+ Sbjct: 255 IFSNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLFKSSKCNILVATDVAARGL 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ D++ VI+ EL E+ +HR GRTGRAG+KG+++ Sbjct: 315 DISDVDAVINYELPPTSEDYVHRIGRTGRAGKKGIAI 351 >gi|225446899|ref|XP_002284103.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 666 Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 214/374 (57%), Gaps = 6/374 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q I AL+ +G L +Q A+L P ++ +D++ A+TG+GKT+AFG+ + ++ N Sbjct: 122 IAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQYN 181 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + PLAL +APTRELA QV E E+ + + GG + R+ L G Sbjct: 182 AKHGRGRNPLALVLAPTRELARQV--EKEFCESAPNLDTLCVYGGTPISRQMNSLDYGVD 239 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ D I+ LN+S ++ VVLDEAD+ML +GF +D+E IL+ P+ R+ +MFS Sbjct: 240 VVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFS 299 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243 AT+ I L + Y K+ + +++ ++ Q I ++ + ++ + + ++ H Sbjct: 300 ATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAK 359 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ R +A + F+ AL G++SQ +R L RDG V +ATDV Sbjct: 360 GGKCIVFTQTKRDADRLAYAMARN-FRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++L+IH EL ++ E +HRSGRTGRAG+KG ++ + + R + R+ Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478 Query: 364 NVSVVWEPAPSVEA 377 P ++E Sbjct: 479 GCKFSELPRIAIEG 492 >gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14] gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14] Length = 633 Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 185/584 (31%), Positives = 295/584 (50%), Gaps = 49/584 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 20 ALNEMGFVTPTPIQSAAIPLLLAGRDALGKAQTGTGKTAAFSLPLLNKLDLTQYK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHI+VGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEIKTLGKNIKGLKVLEIYGGASIVDQMRALKSGAHIIVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I + L++ VLDEADEML +GF DD+ +I++ SP+ + ++FSAT+ P Sbjct: 134 GRVKDLITRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQSPETAQRVLFSATMPPI 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + +D RV++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 194 VKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N R + R S+ Sbjct: 314 INHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRTSMEEIQL 373 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGD---EK--KMVDVLLA--KHDPEKIAAGFLRIH- 424 P + + E R+ Q L L++ + EK ++V+ L A + D +AA L+ Sbjct: 374 PHRDKVAE---SRLTQLGLELEADKDHAALEKFAELVEKLQASLEVDATTLAAILLKRQQ 430 Query: 425 --RAGLCAPEEITPVSLV-------------SGRDRFRDDSRAFKVGGGSRDNFKGSSW- 468 R E+ ++ GR RD R F GSRDN + W Sbjct: 431 GKRPLFYTGEDPMLAAIERDKSRRRDRRESGDGRTDSRDGRREF----GSRDNVRNVDWD 486 Query: 469 -FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523 + L VG Q + + ++ L G+ + SIGAI++ TFV++ S+D LR+ Sbjct: 487 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKSMSSDVTGKLRK 546 Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSS-GFKSKNSQDGATKRFKR 566 I+ K +G DF ++ S G + + ++DG R R Sbjct: 547 L-----RIRQKEVGAVVCDFDDFRESRGRRPEGNRDGGGYRGAR 585 >gi|210614158|ref|ZP_03290078.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787] gi|210150802|gb|EEA81810.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787] Length = 530 Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 160/520 (30%), Positives = 263/520 (50%), Gaps = 35/520 (6%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ I +A+ G+ + +Q + L KD++ AQTG+GKT AFG+ L Sbjct: 6 FENLGLCSEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLLQK 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120 + +N + + + PTRELA+QV E+ L G+ V GG + ++ R Sbjct: 66 VDPKNKKLQ------GIVLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRS 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++G I++GTPGR+ DH+R K + + + VVLDEADEML++GFR+DIE IL P++R Sbjct: 120 LKSGTQIIIGTPGRVMDHMRRKTIKMDQVHTVVLDEADEMLNMGFREDIETILSGVPEER 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ AI + K +QK+A V + + +I+ V +++ + +L Sbjct: 180 QTVLFSATMPKAIMEITKKFQKNAQMVKVTKKELTVPNIEQFYYEVRPKNKEEVLTRLLD 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + K +++FC+T+ V L + L G++ Q +R +Q R G+ + +A Sbjct: 240 IYTPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGID+ ++E V + +L + E +HR GRTGRAGR G S + + + + Sbjct: 300 TDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKEIQ 359 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI--QGDEKKMVDVLLAK-----HDP 413 R + + PS++ + + IL+D +D I D MV+ + +K + Sbjct: 360 RYCKTKIYAQKVPSLDDVANTKMENILED---IDRIIETEDLTAMVNAIESKVNGSDYTA 416 Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 IAA FL+ +C +G D S G + G +++ Sbjct: 417 MDIAAAFLK-----MC-----------TGMTMSDDGSAEDMDFGDTGAEEPGMVRLFINI 460 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 G KQKA+ ++ L +G+ + IG I + TFVEV Sbjct: 461 GKKQKAKPGDILGALAGETGMPGKLIGTIDMFDKYTFVEV 500 >gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 529 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 148/432 (34%), Positives = 229/432 (53%), Gaps = 17/432 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + ++E G+ + + +Q+ + L KD++ AQTG+GKT A+GL + + E+ Sbjct: 19 PEIL-QGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNRIKVED- 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 L + PTRELA+QV EL L G+ GG S ++ + GA + Sbjct: 77 ------GMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAKGAQV 130 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 V TPGRL D ++GK L V+LDEADEMLD+GF DDIE I + P KR+ L+FSA Sbjct: 131 AVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTLLFSA 190 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I LA YQ V IA+ + +I+ ++ ++R+ A+V IL Y A Sbjct: 191 TMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILDYENPFKA 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ L+ + V AL G+L+Q++R L+ + DGR ++ +ATDVAARG Sbjct: 251 IIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ DL LVI+ L + E+ HR GRTGRAG+ G +V ++ R RL + ++ Sbjct: 311 LDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLKGTSGTNL 370 Query: 368 VWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-- 422 P+ + + RE D + + D I D + +++ LL D IA L Sbjct: 371 TIAALPTKKEVHLSREEDFLKKVVD----TEIHADAEAVLEKLLKLEDKRSIALKLLSKM 426 Query: 423 IHRAGLCAPEEI 434 + + PE+I Sbjct: 427 LDNTKISGPEKI 438 >gi|89891288|ref|ZP_01202795.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7] gi|89516600|gb|EAS19260.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7] Length = 644 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 168/525 (32%), Positives = 284/525 (54%), Gaps = 17/525 (3%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57 +K FE + Q + L++ G+ N T +Q+ + L+ + D + AQTG+GKT AFGL Sbjct: 12 LKNFEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLP 71 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHR 116 L L+ N R AL +APTRELA Q+ ++E + G + V + GG ++ Sbjct: 72 LLD-LIDVNSR-----EVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMN 125 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + RD++ GA I+V TPGRL D ++ + + + LK +VLDEADEML++GF++DI+FIL S Sbjct: 126 QIRDIRRGAQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKS 185 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 R + +FSAT++ I + Y V I +N + +I+++++ + SD+ A+ Sbjct: 186 DTGRNIWLFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKASDKIEALR 245 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 L Y +VFC T+ L + + AL G++SQ +R A++ R+ + Sbjct: 246 RFLDYDEDMFGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLK 305 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 + IATDVAARGID+ D+ VIH L +PE HRSGRT RAG+KG+S+ +I + R+ Sbjct: 306 LLIATDVAARGIDVDDITHVIHFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKL 365 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL---LAKHDP 413 + + + + P++EAI ++ R ++ + + + ++++V+ + A Sbjct: 366 KFIASKLGIEFTQGEVPALEAITQKRISRWSENMIKQEINEKIDEQLVNAVQESFADVTK 425 Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS-GRDRFRDDSRAFKVGG-GSRDNFKGSSWFSL 471 E+I A L + I+ ++ S GRD RDDS + G SR +G + + Sbjct: 426 EEIIAKLLTKEYNSIYKRNSISDLNDRSKGRD--RDDSPRRERGKRTSRGTEEGMKTYFI 483 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++G K L+ +C ++GI+ IG I + ++++V+ D Sbjct: 484 NLGLKDDINKGALLGYVCDTTGISGAQIGRIVMDKTHSYMDVAED 528 >gi|212637255|ref|YP_002313780.1| DEAD box helicase [Shewanella piezotolerans WP3] gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella piezotolerans WP3] Length = 611 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 212/375 (56%), Gaps = 9/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L +++ + Sbjct: 20 ALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNSIDPNTN------ 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +P L +APTRELAVQV E YAK G+ V GG S+H++ L+ G I+VGT Sbjct: 74 SPQILVLAPTRELAVQVA-EAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRRGPQIIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + LKA+VLDEADEML +GF DDIE+IL+ +PK+R++ +FSAT+ Sbjct: 133 PGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A Y + V V IA+ I+ R V V+ ++ A+V +L + I+F Sbjct: 193 QIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGIIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G+ + IATDVAARG+D+ Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIATDVAARGLDVE 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R + Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPMD 372 Query: 372 APSVEAIRERDAQRI 386 PS E + ER R+ Sbjct: 373 IPSPETVTERRLSRL 387 >gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 611 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 145/388 (37%), Positives = 219/388 (56%), Gaps = 11/388 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY N T +Q A ++P + KD++ AQTG+GKT AF L L + + + + Sbjct: 20 ALDELGYENPTPIQSASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNKVDMK------IN 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQV E YAK G V GG S+H++ L+ G ++VGT Sbjct: 74 APQILVLAPTRELAVQVA-EAFGSYAKHMKGFHVLPIYGGQSMHQQLSALKRGPQVIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + LKA+VLDEADEML +GF DDIE++L+ PK ++ +FSAT+ Sbjct: 133 PGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPKDSQLALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + + V ++IA+ ID R V V+ ++ A+V +L + I+F Sbjct: 193 QIKRVAAKHLTNPVNISIAASTTTVESIDQRFVQVSQHNKLEALVRVLEVENTEGVIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G+ + IATDVAARG+D+ Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRIAPMK 372 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGD 399 PS E++ ER R+ + L +++ GD Sbjct: 373 VPSPESVAERRLSRLGE--LIQETLNGD 398 >gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera] Length = 666 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 214/374 (57%), Gaps = 6/374 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q I AL+ +G L +Q A+L P ++ +D++ A+TG+GKT+AFG+ + ++ N Sbjct: 122 IAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQYN 181 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + PLAL +APTRELA QV E E+ + + GG + R+ L G Sbjct: 182 AKHGRGRNPLALVLAPTRELARQV--EKEFXESAPNLDTLCVYGGTPISRQMNSLDYGVD 239 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ D I+ LN+S ++ VVLDEAD+ML +GF +D+E IL+ P+ R+ +MFS Sbjct: 240 VVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFS 299 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243 AT+ I L + Y K+ + +++ ++ Q I ++ + ++ + + ++ H Sbjct: 300 ATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAK 359 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ R +A + F+ AL G++SQ +R L RDG V +ATDV Sbjct: 360 GGKCIVFTQTKRDADRLAYAMARN-FRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++L+IH EL ++ E +HRSGRTGRAG+KG ++ + + R + R+ Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478 Query: 364 NVSVVWEPAPSVEA 377 P ++E Sbjct: 479 GCKFSELPRIAIEG 492 >gi|189913376|ref|YP_001964605.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 534 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 148/432 (34%), Positives = 229/432 (53%), Gaps = 17/432 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + ++E G+ + + +Q+ + L KD++ AQTG+GKT A+GL + + E+ Sbjct: 24 PEIL-QGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNRIKVED- 81 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 L + PTRELA+QV EL L G+ GG S ++ + GA + Sbjct: 82 ------GMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAKGAQV 135 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 V TPGRL D ++GK L V+LDEADEMLD+GF DDIE I + P KR+ L+FSA Sbjct: 136 AVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTLLFSA 195 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I LA YQ V IA+ + +I+ ++ ++R+ A+V IL Y A Sbjct: 196 TMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILDYENPFKA 255 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ L+ + V AL G+L+Q++R L+ + DGR ++ +ATDVAARG Sbjct: 256 IIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAARG 315 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ DL LVI+ L + E+ HR GRTGRAG+ G +V ++ R RL + ++ Sbjct: 316 LDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLKGTSGTNL 375 Query: 368 VWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-- 422 P+ + + RE D + + D I D + +++ LL D IA L Sbjct: 376 TIAALPTKKEVHLSREEDFLKKVVD----TEIHADAEAVLEKLLKLEDKRSIALKLLSKM 431 Query: 423 IHRAGLCAPEEI 434 + + PE+I Sbjct: 432 LDNTKISGPEKI 443 >gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 623 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 210/375 (56%), Gaps = 9/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY T +Q A + P + KD+L AQTG+GKT AF L L +++ + Sbjct: 20 ALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNSIDPNTN------ 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQV YAK G+ V GG S+ ++ L+ G I+VGT Sbjct: 74 APQILVLAPTRELAVQVAEAFAS-YAKYMKGLHVLPIYGGQSMQQQLNALRRGPQIIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + LKA+VLDEADEML +GF DDIE+IL+ +PK R++ +FSAT+ Sbjct: 133 PGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQLALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A Y + V V IA+ I+ R V V+ ++ A+V +L + I+F Sbjct: 193 QIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGIIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A++ ++ G+ + IATDVAARG+D+ Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIEQLKRGQLDIIIATDVAARGLDVE 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATNSRIAPMD 372 Query: 372 APSVEAIRERDAQRI 386 PS E + ER R+ Sbjct: 373 VPSPETVTERRLSRL 387 >gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 491 Score = 243 bits (619), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 138/346 (39%), Positives = 206/346 (59%), Gaps = 4/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 ++ + + A++E GY ++T +Q + L +DV+ +AQTG+GKT AF L L LL Sbjct: 9 SLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQRLLKH 68 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122 EN SPA P+ AL + PTRELA QV +++ LYAK T + V GG+ + + +L+ Sbjct: 69 ENSSTSPARHPVRALVLLPTRELADQVAQQIA-LYAKYTKLRSTVVFGGMDMKPQTLELK 127 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G ++V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK R Sbjct: 128 KGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKTRTT 187 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT SP I LA +Y ++ V + +A N S ++ R V D+ AI ++LR Sbjct: 188 LLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRAIHHVLRTR 247 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G K A VF +++ +R ++ L + AL G+ SQ ER AL + G + + TD Sbjct: 248 GVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVDLLVCTD 307 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARG+D+ D+ V + ++ N E+ +HR GRTGRAG G++V ++ Sbjct: 308 VAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLV 353 >gi|152979711|ref|YP_001345340.1| DEAD/DEAH box helicase domain-containing protein [Actinobacillus succinogenes 130Z] gi|150841434|gb|ABR75405.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes 130Z] Length = 615 Score = 243 bits (619), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 181/576 (31%), Positives = 292/576 (50%), Gaps = 37/576 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I A+SE G+ + + +Q A + L +DVL AQTGSGKT AF L L LA+ Sbjct: 13 LPDFILSAVSEMGFESPSPIQHACIPHLLEGRDVLGMAQTGSGKTAAFSLPL----LAQI 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 D S P L +APTRELA+QV E G+ + GG + R L+ GA Sbjct: 69 D--SDEKYPQMLVMAPTRELAIQVADACEQFTKNAKGIRIVTLYGGQRYDIQLRALRQGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHI+ L++S LK +VLDEADEML +GF DD+E ++ P++ + +F Sbjct: 127 QVVVGTPGRILDHIKRGTLDLSALKFIVLDEADEMLRMGFIDDVETVMAELPEQHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + K + + V I S R + DI V ++ A++ L Sbjct: 187 SATMPEPIRRITKRFMTNPQEVRIQSTQRTNPDIAQSCWYVRGYRKNEALLRFLEVEDFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ T++L +H F+ AL+G+++QQ R L +R+G + +ATDVAA Sbjct: 247 AAIIFTRTKTGTLDVTELLDKHGFRAAALNGDMTQQAREQTLDRLRNGSLDILVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR----AERLF 360 RG+D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ FV P+ +RR ERL Sbjct: 307 RGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPR--ERRLLGNIERLM 364 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 ++ V ++A R + L ++ + D+ A D E IAA Sbjct: 365 KKPIEEVELPNHERLQACRRAKFVAKITKQLEHHDLEKYRSLLEDLFTADQDQEDIAAAM 424 Query: 421 LRIHRAG---LCAPEEITP----VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 L + + + P+ P + R + D+ R + V K + + + Sbjct: 425 LMLLQGKQKLILPPDAPMPKRNERRERANRSQRSDERRGYGVP-------KSMDLYRIEI 477 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKLD 528 G E R ++ + IN ++IG I++ D + +E+ G+ LLR +T L+ Sbjct: 478 GRSDGVEVRHIVGAIANEGDINSRNIGHIKLFDDYSTIEL-PQGMPKQLLRHFEKTRVLN 536 Query: 529 KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564 K +Q+ ++ + G ++ F+ ++ + A +RF Sbjct: 537 KQMQMSFVREVQS---GERAERFEHRDGKRRANERF 569 >gi|315924965|ref|ZP_07921182.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621864|gb|EFV01828.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter alactolyticus ATCC 23263] Length = 550 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 169/532 (31%), Positives = 270/532 (50%), Gaps = 59/532 (11%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q I +A++ G+ +T++Q + L KD++ +QTG+GKT+AF + Sbjct: 13 VDQRILDAVARMGFAEMTAIQAQAIPRLLAGKDIIGRSQTGTGKTLAFAIPAVQ------ 66 Query: 67 DRFSPASA-PLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + PA+ P L + PTRELA+QV E E L GV +A GG S+ ++ R ++G Sbjct: 67 -KVDPAAKRPQVLILLPTRELALQVAGEFEKLLTCSEGVAIAAVFGGASMPKQIRAFKSG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A IVVGTPGR+ DH+R L ++ VVLDEADEMLD+GFR+DIE ILD + + Sbjct: 126 AQIVVGTPGRIMDHLRRGTLRFDAMRMVVLDEADEMLDMGFREDIEAILDRVDHPVQTAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ IT +A+ YQ+D V IA +N + I+ R + + A+ +L + Sbjct: 186 FSATMPAPITKMAELYQRDPETVAIAPKNMVAAGIEERYYSIVDGQKFEALTRLLAVYRP 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + A++FC+T+ V T L + + + G++ Q+ R L+ +GR + +ATDVA Sbjct: 246 RRALIFCNTKKYVDELTNALQDRGYSADKIHGDMRQEARLAVLRRFAEGRLAILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ D+++V + ++ N E +HR GRTGRAG+ G+S+ + + Q R +++ R Sbjct: 306 ARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARRRDQYRLKKITRYTR 365 Query: 365 VSVVWEPAP---SVEAIRERDAQRILQD---PLFLDSIQGDEKKMVDVLLAK-HDPEKIA 417 + EPA ++A ++R + D P +L + VD L A+ + +A Sbjct: 366 KPI--EPAAIALRLDAFKDRFGEWTDDDSDMPRYLQA--------VDELAAQGFEMRYVA 415 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-GGSRDNFKG----------- 465 A LR H FR D R + G + KG Sbjct: 416 AVLLRAHLP-------------------FRHDDRDINLMLTGEKGTGKGIRRKRRTHFDP 456 Query: 466 --SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 ++ + VG K A+ R ++ +C SGI ++G I + T+ V + Sbjct: 457 AETTKIFIGVGKKDGAKKRDVLGAICGESGIASDAVGEIAMYGHFTYAAVDS 508 >gi|110638001|ref|YP_678208.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406] gi|110280682|gb|ABG58868.1| ATP-dependent RNA helicase (cold-shock DEAD-box protein A) [Cytophaga hutchinsonii ATCC 33406] Length = 580 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 216/369 (58%), Gaps = 10/369 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEN 66 P+V+ EA+ GY T +QE + + KD+ AQTG+GKT AFG+ A+ ++ N Sbjct: 10 PEVV-EAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEHVDISIN 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125 S L + PTRELA+QV EL+ L K G+ V GG S+ R+ RDL+ GA Sbjct: 69 QTQS-------LILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGA 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ + LN SHL ++LDEADEML++GFR+DIE IL P++R+ ++F Sbjct: 122 HIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++P I LAK +Q + + I + S ++ LV S + + I+ + + Sbjct: 182 SATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQ 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++FC+T+ V T L + ++L G+ +Q++R+ + R G A + +ATDVAA Sbjct: 242 LMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ ++ VI+ ++ + EN +HR GRTGRAG+ G S ++ + + + + R Sbjct: 302 RGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTKA 361 Query: 366 SVVWEPAPS 374 ++ P+ Sbjct: 362 TIEKAETPT 370 >gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax citrulli AAC00-1] gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1] Length = 489 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 138/346 (39%), Positives = 206/346 (59%), Gaps = 4/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 ++ + + A++E GY ++T +Q + L +DV+ +AQTG+GKT AF L L LL Sbjct: 9 SLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQRLLKH 68 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122 EN SPA P+ AL + PTRELA QV +++ LYAK T + V GG+ + + +L+ Sbjct: 69 ENSSTSPARHPVRALVLLPTRELADQVAQQIA-LYAKYTKLRSTVVFGGMDMKPQTLELK 127 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G ++V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK R Sbjct: 128 KGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKTRTT 187 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT SP I LA +Y ++ V + +A N S ++ R V D+ AI ++LR Sbjct: 188 LLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRAIHHVLRTR 247 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G K A VF +++ +R ++ L + AL G+ SQ ER AL + G + + TD Sbjct: 248 GVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVDLLVCTD 307 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARG+D+ D+ V + ++ N E+ +HR GRTGRAG G++V ++ Sbjct: 308 VAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLV 353 >gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase domain-containing protein [Clostridium phytofermentans ISDg] gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans ISDg] Length = 527 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 163/524 (31%), Positives = 260/524 (49%), Gaps = 41/524 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E GY +T +Q + L KD++ AQTG+GKT AF + + + P Sbjct: 17 AIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIPILQ-------KIDPKV 69 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 L A+ + PTRELA+QV E+ + A+ I GG + R+ R L+ G IV+GT Sbjct: 70 KGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLKAGVQIVIGT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R K + + + LDEADEML++GFR+DIE IL P+ R+ L+FSAT+ Sbjct: 130 PGRVMDHMRRKTVKFDKVSMIALDEADEMLNMGFREDIETILKEMPEDRQTLLFSATMPQ 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ YQKDA V + + I+ V ++ + + +L + K +VFC Sbjct: 190 PIMDIARTYQKDATIVKVVKKELTVPKIEQYYYEVRPKNKVDVLSRLLDMYSPKRCLVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V L+ F L G+L QQ+R + R G+A + +ATDVAARGID+ Sbjct: 250 NTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILVATDVAARGIDVD 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 D+E V + ++ + E +HR GRTGRAGR G + ++ + + R + P Sbjct: 310 DVEAVFNYDVPQDEEYYVHRIGRTGRAGRTGRAFTLVVGKEVYKLRDIQRYCKTKIKVMP 369 Query: 372 APSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAK-----HDPEKIAAGFLRIH 424 PSV + A++IL D + +D+ D KM+ ++ AK + +AA FL++ Sbjct: 370 IPSVNDVTAVKAEKIL-DRINELMDA--EDLTKMISIIEAKINESDYTALDVAAAFLKMA 426 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 PEE G +G +++G KQ + Sbjct: 427 MGSDSQPEEQAVPDF------------------GDTGAEQGMVRLFINLGKKQNIRPGDI 468 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524 + + +G+ + IG+I + TFVEV +AD + +++ + Sbjct: 469 LGAIAGETGMPGKLIGSIDMYDKYTFVEVPREYAADVIQVMKES 512 >gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein [Leuconostoc gasicomitatum LMG 18811] gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein [Leuconostoc gasicomitatum LMG 18811] Length = 538 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 154/426 (36%), Positives = 234/426 (54%), Gaps = 13/426 (3%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + Q I +A++ GYV T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + +N AL ++PTRELA+Q EL+ L V V V GG + R+ + Sbjct: 61 EHIDLDNKNIQ------ALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQ 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L++ I+VGTPGRL DHI K + I H+K +VLDEADEML++GF +DIE I+ ++P + Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIEHVKTLVLDEADEMLNMGFLEDIESIIKNTPAE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + + + I ++ +D V + +++ + + I Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 K AIVF T+ V + L + L G+L+QQ RS L + + + Sbjct: 235 DVQAPKLAIVFGRTKRRVEELARGLEARGYHASGLHGDLTQQMRSRVLAQFKSHEINILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356 ATDVAARG+D+ D+ V + ++ +PE+ +HR GRTGRAG KG+SV FV P M R Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVSPNEMDYLRAV 354 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEK 415 E L ++ ++ EPA +A + + +D+ E + VD L A++ E+ Sbjct: 355 EDLTKKRMTAL--EPASLQDARVGKIKNAAGEVSKIVDAANAKEIQSEVDKLTAQYSSEQ 412 Query: 416 IAAGFL 421 +AA L Sbjct: 413 LAAALL 418 >gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44] gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44] Length = 464 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 215/369 (58%), Gaps = 4/369 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69 + A+++ GY ++T +Q + L KDV+ +AQTG+GKT AF L L L+ EN Sbjct: 5 LARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASA 64 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHI 127 SPA P+ AL + PTRELA QV +++ LYAK T + V GG+ + + +L+ G + Sbjct: 65 SPARHPVRALVLLPTRELADQVAQQIA-LYAKHTKLRSTVVFGGMDMKPQTIELKKGVEV 123 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL DHI K + ++ ++ VVLDEAD MLD+GF D++ IL PK R L+FSA Sbjct: 124 LVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSA 183 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T SP I LA +Y +D V + +A N S ++ R V D+ AI ++L+ + A Sbjct: 184 TFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVTDDDKRYAIRSVLKERDIRQA 243 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +F +++ +R T+ L + AL G+ SQ ER AL+ + G + + TDVAARG Sbjct: 244 FIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARG 303 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ D+ V + ++ N E+ +HR GRTGRAG G++V ++ + R + + + Sbjct: 304 LDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKKI 363 Query: 368 VWEPAPSVE 376 EPAP ++ Sbjct: 364 EVEPAPMLD 372 >gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM 20548] Length = 536 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 166/531 (31%), Positives = 264/531 (49%), Gaps = 40/531 (7%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E NI I A+ + GY + +QE + L D++ +QTGSGKT AF + + Sbjct: 1 MKFNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118 + A AL + PTREL +QV +E+E LY K + + GG + R+ Sbjct: 61 ENIEAN-------GITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQI 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ G IVVGTPGRL D +R K L + LK VVLDEADEM D+GFRDD++FILD + Sbjct: 114 KSLKKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNP 173 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ FSAT+ P I +K YQ + V I S+ ID + + S ++ A++ + Sbjct: 174 NRQTCFFSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRL 233 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L H A AIVFC+T+ V R + L + + V L G+L Q R ++ R+ ++ Sbjct: 234 LEIHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQIL 293 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATD+AARG+D+ D+++V + +L E +HR GRT RAG+ G+S +I R + Sbjct: 294 VATDIAARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQ 353 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD---PLFLDSIQGDEKKMVDVLLAK-HDPE 414 + ++ P P++ + + R+++D L + EK ++ L+ K +DP Sbjct: 354 IENYTKANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKDILIRLMEKGYDPF 413 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDR-----------FRDDSRAFKVGGGSRDNF 463 I L+ E++ + L S + + + + G DNF Sbjct: 414 MICQVLLKDKLDINNNHEKLEGIDLKSEKKSKSKSNNKTKKKYDKEMTTLFMNRGKIDNF 473 Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 +K K ++ L R + + + IG IR+Q +F+++ Sbjct: 474 -----------TKDK-----IIKALARMAKVPKDKIGQIRIQKTYSFIDIE 508 >gi|212710051|ref|ZP_03318179.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM 30120] gi|212687258|gb|EEB46786.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM 30120] Length = 468 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 218/374 (58%), Gaps = 10/374 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E G++ +T +QEA L L KDV A+TGSGKT AFGL L + A+N F+ S Sbjct: 29 LNELGFITMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAKN--FNTQS- 85 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV EL L Y ++ +C GGV +R L + AHI+V TP Sbjct: 86 ---LVLCPTRELADQVANELRRLARYIPNLKILTLC-GGVPFSVQRDSLVHAAHILVATP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ + + + HL+ +VLDEAD MLD+GF DDI+ ++ +P+ R+ L+FSAT + Sbjct: 142 GRLLDHLHKETVQLDHLQTLVLDEADRMLDMGFADDIDAVISFTPEDRQTLLFSATWPDS 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +++ QK+ + + I S N + D++ + VA D+ + + +L + +VFC+ Sbjct: 202 IAAISQRIQKNPLTIEINSVN-ELPDVEQQFYEVARHDKIDLLQKLLSREQPASCVVFCN 260 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + V+ L G++ Q++R L +G +RV +ATDVA+RG+D+ Sbjct: 261 TKKDCQAVYDALMDSNQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVASRGLDIKA 320 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 LE+VI+ ELS +PE +HR GRT RAG+ G+++ + +RA L N+ + W P Sbjct: 321 LEMVINFELSWDPEVHVHRIGRTARAGKSGLAISLCSPEEAQRANVLEEMLNIKLNWLPV 380 Query: 373 PSVEAIRERDAQRI 386 P+ I +A+ + Sbjct: 381 PTGLRITPLEAEMV 394 >gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335] gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335] Length = 570 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 173/574 (30%), Positives = 284/574 (49%), Gaps = 37/574 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP V+ +AL + GY T +Q + P L +D++ AQTG+GKT AF L + S + N Sbjct: 14 IPPVL-KALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPILSQIDISN 72 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124 S P AL +APTRELA+QV + YA G V GG S H + + L+ Sbjct: 73 ------SDPQALVLAPTRELALQVAEAFQS-YASHLKGFHVLPIYGGQSYHVQLKQLRRA 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AH++VGTPGR+ DHI+ L + +LK +VLDEADEML +GF +D+E+++ +P+ R++ + Sbjct: 126 AHVIVGTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEWVISQTPQSRQVAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ AI +A+ Y + + ++++ I R V+ + +A+ IL Sbjct: 186 FSATMPAAIRKIAQKYLNSPQELAVKNQSKTADTIRQRFWPVSGYHKLDALTRILEVEDF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVF T+ + ++ L + LSG++ Q +R ++ +R G+ + +ATDVA Sbjct: 246 DGMIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ + VI+ ++ +PE +HR GRTGRAGR+G ++ + +R + R Sbjct: 306 ARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLSSIERSTR 365 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424 + PS E + ++ +R Q +++ ++ +L +++ E I Sbjct: 366 QRIERMEMPSTEVVNDQRIERFKQK--ITNALAQEDSAFFTQILEQYEQEHDVPA---IE 420 Query: 425 RAGLCAP--EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 AG A + P+ L R D G G+ + G F + VG + + Sbjct: 421 IAGALAKLLQGDEPLLLEEKTKPKRRDG-----GSGAATHSVGMERFRVEVGKNHRVKPG 475 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYLGG 538 ++ + +G+ + IG I V D + V+ + + +LLR LD + + LG Sbjct: 476 HIVGAIANETGLANKYIGRISVYDDYSTVDLPVGIPKETFELLRGVKVLDHPMNITSLGK 535 Query: 539 E---------KPDFRGYKSSG--FKSKNSQDGAT 561 KP R SG FK K +D AT Sbjct: 536 TRDEGNWREGKPKRRRNTRSGPPFKKKRRKDKAT 569 >gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas eutropha C91] gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91] Length = 488 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 132/343 (38%), Positives = 204/343 (59%), Gaps = 2/343 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I A+ + GY+N T +Q ++ P L KDV+ SAQTG+GKT F L L L A + Sbjct: 16 ILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLLHHLQAHASSST 75 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL +APTRELA+Q+ + + V GGV++ + +L+NG I+ Sbjct: 76 SPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIEPQITELRNGVEIL 135 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + K +N S + +VLDEAD MLD+GF DI+ ++ P +R+ LMFSAT Sbjct: 136 VATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALLPSQRQSLMFSAT 195 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA K VR+ +A++N + I + + + ++++++ K A+ Sbjct: 196 FSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALLLHLVKQQDLKQAL 255 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ S+ ++L+ H +A+ G+ +QQ+R+ AL + G ++ +ATDVAARGI Sbjct: 256 VFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQILVATDVAARGI 315 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 D+ L V++ EL NPE+ +HR GRTGRAG KG ++ ++ ++ Sbjct: 316 DIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEH 358 >gi|260582883|ref|ZP_05850668.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127] gi|260094096|gb|EEW77999.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127] Length = 613 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 190/579 (32%), Positives = 287/579 (49%), Gaps = 30/579 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLSV 473 + + L P + P+ R D R R KG + + V Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNERGDRRENPRSAERRGERKGYGNPQPMDLYRIEV 483 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTVK---LD 528 G E R ++ + IN + IG I++ D T VE+ G+ +LL++ K L+ Sbjct: 484 GRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFAKTRVLN 542 Query: 529 KGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 K +Q+ +LG K D RG S F K G R +R Sbjct: 543 KQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896] Length = 539 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 215/377 (57%), Gaps = 7/377 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I AL + G+ T +QE + KD++ +QTG+GKT AFG+ + +L Sbjct: 8 NISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPILDNILQN 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N+ AL I PTRELAVQV E + L A T + GG + ++ + L+ Sbjct: 68 NNH-----QIQALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLKKKV 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+GTPGR+ DHI K + + H++ VVLDEADEMLD+GF +DIE IL + ++R+ ++F Sbjct: 123 QIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSEERQTMLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +L+K Y K+ + + ++ I+ + V +D+ + IL+ +K Sbjct: 183 SATMPAEILSLSKKYLKNPEMIRVKNKTMTVDQIEQIYMKVKNADKSEVLSRILQLESSK 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+FC+T+ V + + V AL G+L QQ+R L R+G+ + IATDVAA Sbjct: 243 KAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQISMLIATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ D++LVI+ +L E +HR GRTGRAG G S F ++++ R R+ + A Sbjct: 303 RGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRDIE-RLRRIEKYAK 361 Query: 365 VSVVWEPAPSVEAIRER 381 + E P + ++E+ Sbjct: 362 CKIKEESIPRYDKVKEK 378 >gi|153807208|ref|ZP_01959876.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185] gi|149130328|gb|EDM21538.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185] Length = 640 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/413 (35%), Positives = 230/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S ++ VV+DEADEML++GF D I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY ++A + I +N S++ + A V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTSNVKHVAYTVHAKDKYEA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + P+ I ++ +++ D L+ ++ +E+++ + + Sbjct: 353 KMREIERIIGKKFIPGEMPTAAGICQKQLLKVIDD---LEKVKVNEEEISEFM 402 >gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp. JS42] gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42] Length = 484 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 138/335 (41%), Positives = 200/335 (59%), Gaps = 4/335 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 A++E GY N+T +Q + L KDV+ +AQTG+GKT AF L L LL EN SPA Sbjct: 17 AVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKHENSSASPA 76 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P+ AL + PTRELA QV +++ LYAK T + V GG+ + + +L+ G ++V Sbjct: 77 RHPVRALVLLPTRELADQVAQQI-ALYAKYTKLRSTVVFGGMDMKPQTIELKKGVEVLVA 135 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+R L+FSAT S Sbjct: 136 TPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATFS 195 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA +Y +D + + +A N S ++ R V D+ AI ++L G K A +F Sbjct: 196 PEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRAIRHVLNERGLKQAFIF 255 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +++ +R + L + AL G+ SQ ER AL+ + G + + TDVAARG+D+ Sbjct: 256 VNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGEVDLLVCTDVAARGLDI 315 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ V + ++ N E+ +HR GRTGRAG G++V Sbjct: 316 KDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAV 350 >gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275] gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275] Length = 538 Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 174/532 (32%), Positives = 282/532 (53%), Gaps = 47/532 (8%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 +K FE+ I Q I +A++E G+ + +Q + L KDV+ AQTG+GKT AF + + Sbjct: 3 IKRFEDLDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIPI 62 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHR 116 + NDR + A+ + PTRELA+QV +E+ L Y + G+ GG + R Sbjct: 63 LEKI-DPNDR-----SLQAIVLCPTRELAIQVSQEIRKLAKYMQ-GIKTLPIYGGQPIDR 115 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + + L+ G +++GTPGR DHI+ K + ++K VVLDEADEMLD+GFR+DIE IL++ Sbjct: 116 QIKALKGGVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETILENV 175 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKD-----AVRVNIASENRQHSDIDYRAVLVALSDR 231 P++R+ FSAT+ AI L K YQ + VR + EN + I+ RA S++ Sbjct: 176 PEERQTTFFSATMPKAILELTKKYQNEPEHIKVVRKELTVENIKQYYIETRA-----SNK 230 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 + ++ + K ++VFC+T+ L + AL G+L Q +R + R Sbjct: 231 IEVLSRLIDVYNPKLSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFR 290 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 +G + +ATDVAARGID+ D+E V + +L + E +HR GRTGRAGR+G+S FV + Sbjct: 291 NGTIDILVATDVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTGRAGREGLSFSFVYGR 350 Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRER-------DAQRILQDPLFLDSIQGDEK-- 401 +M R+ + + R + P P+V + E+ + +R+ + IQ E Sbjct: 351 DM-RKMKDIERYTKSKLEKHPIPTVGDVEEKKVGAFFEEVKRVANEGKLSKQIQWLENFC 409 Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461 + DV + D IAA L++ + E+ + ++R +++S K Sbjct: 410 ENEDVDYSMVD---IAAALLKL---AMGEEEKEEIIEEKPKKNRRKEESSGAK------- 456 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +G ++VG KQ+ +A+ ++ + +GI ++IG I + TFVEV Sbjct: 457 --EGMVRLFINVGKKQRVQAKDILGAIAGEAGIPGKTIGTIDIYDKFTFVEV 506 >gi|189460629|ref|ZP_03009414.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136] gi|189432588|gb|EDV01573.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136] Length = 637 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 173/549 (31%), Positives = 271/549 (49%), Gaps = 29/549 (5%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + I +A+ E GY N VQE ++ P L DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSAEIRQAIEEMGYENPMPVQEEVI-PYLLGNRNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + P AL + PTREL +Q+ +L ++ T + + GG S+ Sbjct: 60 PLIQKIDV------TKRIPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ G HI+V TPGRL D + K + ++ VV+DEADEML++GF D I IL+ Sbjct: 114 SQIRSLKQGVHIIVATPGRLIDLMERKVARLETIRDVVMDEADEMLNMGFTDSINAILEQ 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P+ R LMFSAT+SP I +AK Y +A + I ++N ++ + A +V D+ A+ Sbjct: 174 VPEDRNTLMFSATMSPEIARIAKTYLHNAKEITIGTKNEGSKNVHHIAYIVHAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 ++ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 234 KRVVDYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRYL 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G+S+ +I + + Sbjct: 294 QLLVATDVAARGLDVNDLTHVINYALPDDTESYTHRSGRTGRAGKTGISIAIINLREKGK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-------- 407 + R N PS + I E+ +++ D ++ ++ +E ++ L Sbjct: 354 MREIERIINKKFTISTLPSGKEICEQQLIKVIDD---IEKVKVNEDEIEAFLPGIYRKLE 410 Query: 408 -LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464 L+K D K ++ F R APE P + + R +R K Sbjct: 411 WLSKEDLIKRVVSMEFNRFLEYYKNAPEIEQPKANEKSNEAKERKDRGSDREKVARKAEK 470 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 G + L++G A ++ ++ R+ IG I + + +F EV ++ + Sbjct: 471 GYTRLFLNLGKTDGFYANQIIELINRNLKKEHIQIGRIDLMQNFSFFEVVESQASMVMKA 530 Query: 525 ---VKLDKG 530 V L+KG Sbjct: 531 LNKVTLNKG 539 >gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 625 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 209/375 (55%), Gaps = 9/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY T +Q A + P + KD+L AQTG+GKT AF L L +++ + Sbjct: 20 ALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNSIDPNTN------ 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQV YAK G+ V GG S+ ++ L+ G I+VGT Sbjct: 74 APQILVLAPTRELAVQVAEAFAS-YAKYMKGLHVLPIYGGQSMQQQLNALRRGPQIIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + LKA+VLDEADEML +GF DDIE+IL+ +PK R++ +FSAT+ Sbjct: 133 PGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQLALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A Y + V V IA+ I+ R V V+ ++ A+V +L + I+F Sbjct: 193 QIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGIIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G+ + IATDVAARG+D+ Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGQLDIIIATDVAARGLDVE 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATNSRIAPMD 372 Query: 372 APSVEAIRERDAQRI 386 PS E + ER R+ Sbjct: 373 VPSPETVTERRLSRL 387 >gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. KMS] gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. JLS] gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS] gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS] gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS] Length = 557 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 174/527 (33%), Positives = 276/527 (52%), Gaps = 43/527 (8%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+++ GY +++Q A + L DV+ AQTG+GKT AF + + S Sbjct: 22 PEVL-RAVTDVGYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPILS------- 73 Query: 68 RFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P S A AL +APTRELA+QV A V V GG S + L+ GA Sbjct: 74 KIDPNSRATQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSSYGPQMAGLKRGAQ 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L++SHL +VLDEADEML +GF +D+E IL +P+ +++ +FS Sbjct: 134 VVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERILSDTPEYKQVALFS 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I + K Y D V V + S+ + +I R + V+ + +A+ +L Sbjct: 194 ATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQVSYPRKMDALTRLLETEQGDG 253 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + + L F A++G++ Q R + ++DG + +ATDVAAR Sbjct: 254 MIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDILVATDVAAR 313 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFREA 363 G+D+ + V++ ++ +PE+ +HR GRTGRAGR G ++ FV P+ ++ ER+ R+ Sbjct: 314 GLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSIERVTRQK 373 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK---HDPEK----- 415 V + PSVE + +AQR+ + F DSI G+ + L + D E+ Sbjct: 374 LVEIQL---PSVEDV---NAQRVEK---FRDSI-GEALNAPGIDLFRRLIEDYERDNNVP 423 Query: 416 ---IAAGFLRIHRAGLCAPEE--ITPVSLVSGRDR-FRDDSRAFKVGGGSRDNFKGSSWF 469 IAA R G EE +T R+R RD+S K +R + + + Sbjct: 424 LADIAAALAVQSRNG----EEFLMTEPPPEKRRERPVRDESGPRKARDRTRSDL---ATY 476 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++VG + K ++ + G+NR G I ++P+ + VE+ AD Sbjct: 477 RIAVGKRHKVMPGAIVGAIANEGGLNRSDFGHIAIKPEYSLVELPAD 523 >gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM 12042] gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM 12042] Length = 556 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 156/518 (30%), Positives = 265/518 (51%), Gaps = 26/518 (5%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + A+++ GY T +Q A + + DV+ +QTG+GKT AF + + Sbjct: 1 MKFNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRER 118 +L DR P AL ++PTRELA+QV E+ ++ K G+ GG + ++ Sbjct: 61 E-MLEVTDR----KRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQI 115 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +L+ GA IVVGTPGR+ DHIR + L + +VLDEADEML++GFR+DIE ++++ P+ Sbjct: 116 LELKKGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQ 175 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT+ I + YQ + V + I+ + + ++ + Sbjct: 176 QRQTVLFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQL 235 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + A++FC+T+ V T L + AL G++ Q+ R+ + + G+ + Sbjct: 236 ISMQNPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINIL 295 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARGID+ +++V + +L E +HR GRTGRAG++G++V +I + Sbjct: 296 VATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRD 355 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMV-DVLLAKHDPEKI 416 L R + +P PS+E +R+ + LD ++ D E +M DV PE + Sbjct: 356 LERTTRSKLTQKPLPSLEEVRK----------IRLDFLREDLEHRMTRDV------PEPL 399 Query: 417 AAGFLRIHRAGLCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 AA + G E ++ ++G + F + + KG S L +GS Sbjct: 400 AAIIDTMKDDGYSYREMALALAYQIAGHEMFDESAWNASARPALTVTEKGMSELILDIGS 459 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 Q A ++ + ++G+ + IG IR+ T V++ Sbjct: 460 DQDVSAAIIVSAIATATGLPGKDIGKIRISAQETTVQI 497 >gi|325299227|ref|YP_004259144.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318780|gb|ADY36671.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM 18170] Length = 618 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/410 (36%), Positives = 232/410 (56%), Gaps = 19/410 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFG 55 MK FE + P+ I +A+ E GY N VQE ++ P L DV+ AQTG+GKT AFG Sbjct: 1 MKTFEELGVAPE-IRKAIEEMGYENPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAFG 58 Query: 56 LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVS 113 L L + N P AL + PTREL +Q+ +L Y+K T + + GG S Sbjct: 59 LPLIQKIDVGN------RVPQALILCPTRELCLQIAGDLND-YSKYITDLKIIPVYGGSS 111 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + + + L+ G HI+V TPGRL D I K + ++ VV+DEADEML++GF D I IL Sbjct: 112 IESQIKSLKKGVHIIVATPGRLIDLIERKVAKLETIRDVVMDEADEMLNMGFTDSINAIL 171 Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 + P+ R LMFSAT+SP I+ +AK Y +DA + I ++N ++ + A +V D+ Sbjct: 172 EKVPEDRNTLMFSATMSPEISRIAKTYLRDAKEITIGTKNEGTKNVHHVAYIVHAKDKYL 231 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 A+ ++ ++ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 232 ALKRVVDFYPMIYGIIFCRTRLETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQR 291 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G+S+ ++ + Sbjct: 292 HLQLLVATDVAARGLDVNDLTHVINYGLPDDVESYTHRSGRTGRAGKTGISIAIMNLREK 351 Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403 + +++ R N E P+ +AI E+ +++ D ++ ++ DE+++ Sbjct: 352 GKMKQIERILNKKFSVETLPTGQAICEQQLIKLVDD---IEKVKVDEEEI 398 >gi|255690282|ref|ZP_05413957.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides finegoldii DSM 17565] gi|260624185|gb|EEX47056.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides finegoldii DSM 17565] Length = 621 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/354 (40%), Positives = 205/354 (57%), Gaps = 14/354 (3%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYENPMPVQEKVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S ++ VV+DEADEML++GF + I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTESINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 PK+R L+FSAT+SP I ++KNY ++A + I +N S++ + A V D+ A Sbjct: 173 DVPKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVHAKDKYEA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAII 346 >gi|145628549|ref|ZP_01784349.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21] gi|145639856|ref|ZP_01795457.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII] gi|144979019|gb|EDJ88705.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21] gi|145271074|gb|EDK10990.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII] Length = 613 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 181/557 (32%), Positives = 280/557 (50%), Gaps = 33/557 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRD---------DSRAFKVGGGSRDNFKGSSWFS 470 + + L P + P+ R + R + G G N + + Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNERGDRRENPRSAERRGERKGYG---NPRPMDLYR 480 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTV 525 + VG E R ++ + IN + IG I++ D T VE+ G+ +LL+ +T Sbjct: 481 IEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFGKTR 539 Query: 526 KLDKGIQLKYLGGEKPD 542 L+K +Q+ +LG K D Sbjct: 540 VLNKQMQMSFLGAVKSD 556 >gi|224536831|ref|ZP_03677370.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus DSM 14838] gi|224521553|gb|EEF90658.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus DSM 14838] Length = 657 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/413 (36%), Positives = 229/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKNFEELGLSPE-IRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K TG+ V GG S+ Sbjct: 60 PLIQKINVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYITGLRVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K ++++ ++ VV+DEADEML++GF D I IL Sbjct: 113 DSQIRALKQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++K Y +DA + I +N S++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDTVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + + P+ + I E+ +++ D L+ ++ +E+ M D + Sbjct: 353 KMREIERIISKKFIVGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDMADFM 402 >gi|153871201|ref|ZP_02000433.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS] gi|152072333|gb|EDN69567.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS] Length = 466 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/398 (35%), Positives = 226/398 (56%), Gaps = 16/398 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q + L GY N+T +Q L L+ +DV+ A+TGSGKT AFG+ L S L A+N Sbjct: 15 IKQAMLANLESIGYSNMTPIQAESLPSILKNQDVIAQAKTGSGKTAAFGIGLLSKLNAKN 74 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 + AL + PTRELA QVG+E+ L + + ++++C GG + +R L +G Sbjct: 75 YQVQ------ALVLCPTRELAEQVGQEIRRLARFTQNVKLLSLC-GGKPIAPQRDSLAHG 127 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHI+VGTPGR+ DH+R LN+ + +VLDEAD MLD+GF DD+ I+ PKKR+ L+ Sbjct: 128 AHIIVGTPGRIQDHLRKGSLNLKNAHTLVLDEADRMLDMGFYDDMMDIISYLPKKRQTLL 187 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243 FSAT +I ++ QK V + + S + +S+I+ R V R A++ +L ++ Sbjct: 188 FSATFPDSIVQMSHAIQKQPVNIQVESLH-SYSEIEQRFYQVKQPQHRKEAVMTLLAHYQ 246 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++ ++FC+T+ L ++ + +A+ G+L Q+ER L + + +ATDV Sbjct: 247 PESTVIFCNTKLQCQEIATQLKKNGYYAIAIHGDLEQKERDQVLLRFANKSCSILVATDV 306 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ DL++VI+ EL + + +HR GRTGRAG+KG+++ + + Q + E + Sbjct: 307 AARGLDINDLQVVINYELPGSQDIHIHRIGRTGRAGKKGLALSLYTASEQHKIEAIAEIQ 366 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 N + S+E D + P+ I G +K Sbjct: 367 NQPCRCDALESLE-----DKGTLRPPPMITICIHGGKK 399 >gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus TPSY] gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY] Length = 484 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 138/335 (41%), Positives = 199/335 (59%), Gaps = 4/335 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 A++E GY N+T +Q + L KDV+ +AQTG+GKT AF L L LL EN SPA Sbjct: 17 AVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKHENSSASPA 76 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P+ AL + PTRELA QV +++ LYAK T + V GG+ + + +L+ G ++V Sbjct: 77 RHPVRALVLLPTRELADQVAQQIA-LYAKYTKLRSTVVFGGMDMKPQTIELKKGVEVLVA 135 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+R L+FSAT S Sbjct: 136 TPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATFS 195 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA +Y +D + + +A N S ++ R V D+ AI ++L G K A +F Sbjct: 196 PEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRAIRHVLNERGLKQAFIF 255 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +++ +R + L + AL G+ SQ ER AL + G + + TDVAARG+D+ Sbjct: 256 VNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALDAFKSGEVDLLVCTDVAARGLDI 315 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ V + ++ N E+ +HR GRTGRAG G++V Sbjct: 316 KDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAV 350 >gi|113460849|ref|YP_718916.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT] gi|112822892|gb|ABI24981.1| ATP-dependent RNA helicase CsdA [Haemophilus somnus 129PT] Length = 601 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 180/588 (30%), Positives = 300/588 (51%), Gaps = 42/588 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I A+SE G+ + +Q+A + L DVL AQTGSGKT AF L L + + N Sbjct: 13 LPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLLAKI-DTN 71 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +++ P L +APTRELA+QV E ++ GV + GG + R L+ GA Sbjct: 72 EKY-----PQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLRALKQGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S+L+++VLDEADEML +GF DD+E ++ P++ + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + K + + V I S R DI V ++ A++ L Sbjct: 187 SATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEALLRFLEVEDFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ + T++L +H F+ AL+G+++QQ R L +R+G + +ATDVAA Sbjct: 247 AAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR----AERLF 360 RG+D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ FV P+ +RR ERL Sbjct: 307 RGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPK--ERRLLGNIERLM 364 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 ++A V +++ R ++ + L ++ + D+ A D E IAA Sbjct: 365 KKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAM 424 Query: 421 LRI--HRAGLCAPEEITPV---------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469 L + + L PE+ PV G R +++ R+ + G G+ + + Sbjct: 425 LMLLQGKQKLILPED--PVFEKHSRRNDRRERGERRGKENPRSERHGYGTP---QPMDLY 479 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTV 525 + VG E R ++ + I + IG I++ + +E+ + + + +T Sbjct: 480 RIEVGRCDGVEVRHVVGAIANEGDIQSRYIGHIKLYDTYSTIELPQGMPKELLQVFAKTR 539 Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR-FKGASK 572 L+K +++ ++ + SG K K R++R F+G K Sbjct: 540 VLNKQMRMSFVSAVNSEEEFEAGSGGKRKG-------RYEREFRGGRK 580 >gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera] Length = 568 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 214/373 (57%), Gaps = 6/373 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q I AL+ +G L +Q A+L P ++ +D++ A+TG+GKT+AFG+ + ++ N Sbjct: 122 IAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQYN 181 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + PLAL +APTRELA QV E E+ + + GG + R+ L G Sbjct: 182 AKHGRGRNPLALVLAPTRELARQV--EKEFCESAPNLDTLCVYGGTPISRQMNSLDYGVD 239 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ D I+ LN+S ++ VVLDEAD+ML +GF +D+E IL+ P+ R+ +MFS Sbjct: 240 VVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFS 299 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243 AT+ I L + Y K+ + +++ ++ Q I ++ + ++ + + ++ H Sbjct: 300 ATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAK 359 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ R +A + F+ AL G++SQ +R L RDG V +ATDV Sbjct: 360 GGKCIVFTQTKRDADRLAYAMARN-FRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++L+IH EL ++ E +HRSGRTGRAG+KG ++ + + R + R+ Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478 Query: 364 NVSVVWEPAPSVE 376 P ++E Sbjct: 479 GCKFSELPRIAIE 491 >gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 594 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 167/511 (32%), Positives = 266/511 (52%), Gaps = 36/511 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E+GY T +Q + L D+L +QTG+GKT AFGL + S L D+ Sbjct: 28 IVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPMLS-LTQPGDKKR 86 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 S L + PTREL +QV E+ + K GV +A GG + ++ RDL+ GA IVV Sbjct: 87 TNS----LILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKRGADIVV 142 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DHIR K + + + +VLDEADEML++GF +DIE I P++R+ FSAT+ Sbjct: 143 ATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFAFFSATM 202 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I L++ + + R+ ++ N S I V D+ + + +L+ H ++ Sbjct: 203 PKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHKTSGTMI 262 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V T L + F + L G++ Q+ RS + + G V IATDVAARGID Sbjct: 263 FCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVAARGID 322 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + +++VI+ ++ E +HR GRTGRAG++G+++ ++ + + +++ R +N ++V Sbjct: 323 VDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIERLSNSTIVE 382 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL- 428 P P+ E + + L +D + + +K D H+ K+ I GL Sbjct: 383 TPLPTKEQLND----------LMVDQLAREIRKWND-----HEQGKL----FNIAYEGLR 423 Query: 429 ---CAPEEITPVSLVSGRDRFRDDS--RAFKVGGGSRDNFKGS-SWFSLSVGSKQKAEAR 482 EEI +V+ ++ +S A KV KG S LSVG + A Sbjct: 424 NENFTQEEI----IVAFINKMISESNLEAIKVSKQKDVKNKGEISRIGLSVGDRDGIAAA 479 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 L+ + +SGI + IG I++ + + VEV Sbjct: 480 HLVSAIATASGIRGKDIGRIKIDDNESTVEV 510 >gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4] gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4] Length = 474 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 139/347 (40%), Positives = 205/347 (59%), Gaps = 10/347 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q L L KDV+ A+TGSGKT AFG+ L S L A + R Sbjct: 30 LASLGYAEMTPIQAHSLPLILAGKDVIAKAKTGSGKTAAFGIGLLSHLDATSSRVQ---- 85 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QVG+EL L + V+ +C GGV + L++GAHIVVGTP Sbjct: 86 --ALVLCPTRELADQVGKELRRLARFTDNIKVLTLC-GGVPFGPQLGSLEHGAHIVVGTP 142 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R L+++ L+ +VLDEAD MLD+GF+D+I ++D++PKK++ L+FSAT A Sbjct: 143 GRILDHLRRGSLDLTCLQTLVLDEADRMLDMGFQDEISALIDATPKKKQTLLFSATYPEA 202 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q + V V++ E S I+ V +R A+ IL ++ ++ +VFC+ Sbjct: 203 IAAMSATIQHEPVAVSV-DEVHDESAIEQVLYEVDKEERTEAVARILGHYRPESTLVFCN 261 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + F +A+ G+L Q+ER L + V +ATDVAARG+D+ + Sbjct: 262 TKIECQEVADALVKRGFSALAIHGDLEQRERDQVLVRFANKSVSVLVATDVAARGLDIKE 321 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 L VI+ ELS +PE +HR GRTGRAG G+ + ++ RR + + Sbjct: 322 LAAVINYELSRDPEIHIHRIGRTGRAGETGLGLSLVTAQESRRVQAI 368 >gi|255010251|ref|ZP_05282377.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] Length = 636 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 149/413 (36%), Positives = 228/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I +A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLIQKINVKN------RIPQSLVLCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K ++++ + VV+DEADEML++GF + I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY DA + I +N S++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLHDAKEITIGRKNESTSNVKHVVYTVHAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ IVFC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + P+ + I E+ +++ D L+ ++ +E+ + D + Sbjct: 353 KMREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFM 402 >gi|301168896|emb|CBW28490.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810] Length = 613 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 188/582 (32%), Positives = 289/582 (49%), Gaps = 36/582 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A ++VGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRD---------DSRAFKVGGGSRDNFKGSSWFS 470 + + L P + P+ R + R + G G N + + Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNERGDRRENPRSAERRGERKGYG---NPQPMDLYR 480 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTV 525 + VG E R ++ + IN + IG I++ D T VE+ G+ +LL+ +T Sbjct: 481 IEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFGKTR 539 Query: 526 KLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566 L+K +Q+ +LG K D RG S F K G R +R Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579 >gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1] gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1] Length = 473 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 140/374 (37%), Positives = 219/374 (58%), Gaps = 4/374 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-A 64 ++ + + A+++ GY ++T +Q + L KDV+ +AQTG+GKT AF L L L+ Sbjct: 9 HLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRH 68 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122 EN SPA P+ AL + PTRELA QV +++ LYAK T + V GG+ + + +L+ Sbjct: 69 ENASASPARHPVRALVLLPTRELADQVAQQIA-LYAKHTKLRSTVVFGGMDMKPQTLELK 127 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G ++V TPGRL DHI K + ++ ++ VVLDEAD MLD+GF D++ IL PK R Sbjct: 128 KGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTT 187 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT SP I LA +Y +D V + +A N S ++ R V+ D+ AI ++L+ Sbjct: 188 LLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVSDDDKRYAIRSVLKER 247 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + A +F +++ +R T+ L + AL G+ SQ ER AL+ + G + + TD Sbjct: 248 DIRQAFIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLKALEAFKAGEVDLLVCTD 307 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ D+ V + ++ N E+ +HR GRTGRAG G++V ++ + R + + Sbjct: 308 VAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKL 367 Query: 363 ANVSVVWEPAPSVE 376 + EPAP ++ Sbjct: 368 IKKKIDVEPAPMLD 381 >gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep ecotype'] Length = 589 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 171/532 (32%), Positives = 267/532 (50%), Gaps = 29/532 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ I +AL + GY + +Q + L D+L AQTG+GKT AF L + + + E Sbjct: 13 NLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDPE 72 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN 123 + P L +APTRELA+QV + +YA + V GG S + R L+ Sbjct: 73 QRK------PQLLVLAPTRELAIQVAEAFQ-VYASFSQKIKVLPVYGGQSYDNQIRQLKR 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGR+ DHI+ K L++S LK +VLDEADEML +GF DD+E IL +P++R+ Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + + Y KD V IAS+ S I R +A + A+ I+ Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRIMEVEV 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + L+ + V L+G++ Q R ++ ++ G+ + +ATDV Sbjct: 246 FDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 ARG+D+ + VI+ ++ + E+ +HR GRTGRAGR+G ++ I +R + + Sbjct: 306 VARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIEKTT 365 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHD----PEKIA 417 + P PS+ I E R Q ++ Q D E M V + K + PE I Sbjct: 366 KQPIEAMPIPSISEINETRLSRFKQS--VAEATQDDSIESLMPIVEMIKEENEASPETIM 423 Query: 418 AGFLRIHRAG--LCAPE----EITPVSLVSGRDRFRDD-----SRAFKVGGGSRDNFKGS 466 A L+I + L E +I RDR D R +V G+R +G Sbjct: 424 AALLKIAQGDEPLILKESDRPDINSKPPRDNRDRNSRDGRDGRERKPRVPRGNRKPEEGM 483 Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 F + VG A+ ++ + + IN + IGAI + + + V++ DG+ Sbjct: 484 QRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDL-PDGM 534 >gi|160888638|ref|ZP_02069641.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492] gi|156861952|gb|EDO55383.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492] Length = 618 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 146/412 (35%), Positives = 227/412 (55%), Gaps = 15/412 (3%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + N P +L + PTREL +Q+ +L ++ G+ V GG S+ Sbjct: 60 PLIQKINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ G HI+V TPGRL D + K ++++ ++ VV+DEADEML++GF D I IL Sbjct: 114 SQIRALKRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILAD 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P++R L+FSAT+SP I ++K Y +DA + I +N S++ + A V D+ A+ Sbjct: 174 VPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAKDKYAAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 234 KRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNL 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + + Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + R + P+ + I E+ +++ D L+ ++ +E+++ D + Sbjct: 354 MREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEEIADFM 402 >gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522] gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 528 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 161/524 (30%), Positives = 266/524 (50%), Gaps = 36/524 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE+ I I +A+ + G+ + +QE ++ L+ DV+ AQTG+GKT AFG+ L Sbjct: 1 MMKFEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + ++ S L + PTRELA+QV EL+ L + GG S+ + Sbjct: 61 LEKVTSDRQVQS-------LILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQI 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ G +VVGTPGR+ DH+ K L + + ++LDEADEMLD+GF +DIE IL Sbjct: 114 KALKRGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNT 173 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ ++FSAT+ P I L+ Y + +V I+ I+ V ++ +++ + Sbjct: 174 NRQTMLFSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRV 233 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + I+FC T+ V+ T+ L + L G+L+Q +R ++ RD Sbjct: 234 IDSETIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFL 293 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 IATDVAARGID+ ++ VI+ ++ +PE+ +HR GRTGRAGR+G++V ++ + Sbjct: 294 IATDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRS 353 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKHD 412 + E +++ + PSVE + E+ Q+ + +D I+ +E +V LL ++ Sbjct: 354 IEAEIKMTIPSQRIPSVEEVVEK--QQHVWKGQIIDLIESEEDDAGLYDDLVSDLLNQYP 411 Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472 P KI A L++ + S D DD F G KG + F ++ Sbjct: 412 PNKIVASLLKL--------------AFYSHED-LNDDGYDFGDTGAQ----KGMTRFFIN 452 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 VG + + L + + GI +S+G I + + TF+EV + Sbjct: 453 VGRNIELTPKKLAEEVSQLVGIPTKSVGRIDIFDNFTFMEVPQE 496 >gi|270294991|ref|ZP_06201192.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274238|gb|EFA20099.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 650 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 146/412 (35%), Positives = 227/412 (55%), Gaps = 15/412 (3%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + N P +L + PTREL +Q+ +L ++ G+ V GG S+ Sbjct: 60 PLIQKINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ G HI+V TPGRL D + K ++++ ++ VV+DEADEML++GF D I IL Sbjct: 114 SQIRALKRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILAD 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P++R L+FSAT+SP I ++K Y +DA + I +N S++ + A V D+ A+ Sbjct: 174 VPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAKDKYAAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 234 KRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNL 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + + Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + R + P+ + I E+ +++ D L+ ++ +E+++ D + Sbjct: 354 MREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEEIADFM 402 >gi|313148046|ref|ZP_07810239.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] gi|313136813|gb|EFR54173.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] Length = 647 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 149/413 (36%), Positives = 228/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I +A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 12 MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 70 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 71 PLIQKINVKN------RIPQSLVLCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 123 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K ++++ + VV+DEADEML++GF + I IL Sbjct: 124 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILA 183 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY DA + I +N S++ + V D+ A Sbjct: 184 DVPQERNTLLFSATMSPEIARISKNYLHDAKEITIGRKNESTSNVKHVVYTVHAKDKYAA 243 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ IVFC TR L + + +L GELSQ +R +Q R Sbjct: 244 LKRIVDYYPQIYGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 303 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 304 LQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 363 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + P+ + I E+ +++ D L+ ++ +E+ + D + Sbjct: 364 KMREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFM 413 >gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47] Length = 862 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 174/583 (29%), Positives = 286/583 (49%), Gaps = 53/583 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A++ GY T +Q I+ L +DVL +QTG+GKT AF L + S + + R Sbjct: 246 VQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSRVDVRSRR-- 303 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L +APTRELA+QV R A +G VA GG + + L+ G +VV Sbjct: 304 ----PQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQVVV 359 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH++ L++ L +VLDEADEML++GF +D++F+L+ SP+ R++ +FSAT+ Sbjct: 360 GTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALFSATL 419 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +A Y D R+ I S+ + + RA+ V+ D+ +A+ IL IV Sbjct: 420 PKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETDGVIV 479 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ S + L++ F +AL+G++ Q+ R + ++ G+ V +ATDVAARG+D Sbjct: 480 FTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLD 539 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN---VS 366 +P + V + +L + E+ +HR GRTGRAGR G ++ + N QRR R + Sbjct: 540 VPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFL-TNAQRRQLRFIENTTKQPIE 598 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV-DVLLAKHDPEK------IAAG 419 ++ P+V I E +R Q + + D+ V ++A++ E IAA Sbjct: 599 IID--IPTVADINEARVRRFKQ---RITDVSADQDLTVYKDMIAQYAEESGKPMEMIAAA 653 Query: 420 FLRIHRAGLC--------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK------- 464 + + G E + GRD F + R+ G D + Sbjct: 654 LAEMSQNGRPFLLKERPKKQRERSDRDNSRGRDSFDSNDRSGNRGSFGDDRPRRPKGRPL 713 Query: 465 -----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSA 515 G + + L VG + + ++ + +GI+ + IG I ++ T ++ + + Sbjct: 714 TPVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDLPEGMPS 773 Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFRG------YKSSGFK 552 D LR+T K + L+ G DF G ++ GF+ Sbjct: 774 DIYQTLRKTWVAGKRLNLEEAGDVVDDFEGDGGRSNFRKEGFR 816 >gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans BC] gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus denitrificans K601] gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans BC] gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans K601] Length = 480 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 137/338 (40%), Positives = 202/338 (59%), Gaps = 4/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 A+++ GY N+T +Q + L KDV+ +AQTG+GKT AF L L LL EN SPA Sbjct: 17 AVADMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKHENSSASPA 76 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P+ AL + PTRELA QV +++ +YAK T + V GG+ + + +L+ G ++V Sbjct: 77 RHPVRALVLLPTRELADQVAQQIA-MYAKYTKLRSTVVFGGMDMKPQTAELKKGVEVLVA 135 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+R L+FSAT S Sbjct: 136 TPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATFS 195 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA +Y +D V + +A N S ++ R V D+ AI ++L G K A +F Sbjct: 196 PEIKRLAGSYLQDPVTIEVARPNETASTVEQRFFSVQDDDKRRAIRHVLTERGLKQAFIF 255 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +++ +R + L + AL G+ SQ ER AL+ + G + + TDVAARG+D+ Sbjct: 256 VNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGDVDLLVCTDVAARGLDI 315 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ V + ++ N E+ +HR GRTGRAG G++V ++ Sbjct: 316 KDVPAVFNHDVPFNAEDYVHRIGRTGRAGASGLAVTLV 353 >gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 772 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 223/388 (57%), Gaps = 12/388 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ + E+L +RG +L +Q A+L P L +D++ A+TG+GKT+AFG+ + + E+ Sbjct: 127 LPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIK-CITED 185 Query: 67 DRFS---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122 D+ S P L +APTRELA QV +E+ + VC+ GGVS +R L Sbjct: 186 DKSSQRRTGRLPRVLVLAPTRELAKQVEKEIN---ESAPYLSTVCVYGGVSYITQRNALS 242 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VVGTPGR+ D I L + ++ +VLDEAD+ML GF +D+E IL++ P KR+ Sbjct: 243 RGVDVVVGTPGRIIDLINSGSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENLPSKRQS 302 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++FSAT+ + LA+ Y + +++++ E + I A+ + + + + +++ Sbjct: 303 MLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYAISTNATSKRSILSDLVT 362 Query: 241 -YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 Y I+F T+ + VL + AL G++SQ +R L R G+ V + Sbjct: 363 VYAKGGKTIIFTQTKRDADEVSMVLTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLV 421 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVA+RG+D+P+++LVIH EL ++PE +HRSGRTGRAG++G +V + + +R + L Sbjct: 422 ATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMFTSSQRRTVKSL 481 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRIL 387 R+ + P E + E A++++ Sbjct: 482 ERDVGCRFEFVSPPGTEEVLESSAEQVI 509 >gi|189464961|ref|ZP_03013746.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM 17393] gi|189437235|gb|EDV06220.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM 17393] Length = 659 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 149/413 (36%), Positives = 229/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKNFEELGLSPE-IRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K TG+ V GG S+ Sbjct: 60 PLIQKINVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYITGLRVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K ++++ ++ VV+DEADEML++GF D I IL Sbjct: 113 DSQIRALKQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++K Y +DA + I +N S++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + + P+ + I E+ +++ D L+ ++ +E+ M D + Sbjct: 353 KMREIERIISKKFIIGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDMADFM 402 >gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270] gi|158447119|gb|EDP24114.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270] Length = 580 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 151/521 (28%), Positives = 269/521 (51%), Gaps = 17/521 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ E G+ + +Q+ + L +D++ AQTG+GKT +FG+ + + Sbjct: 9 NLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPIVEKV--- 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ S + A+ + PTREL++QV E+ L GV V GG + R+ R L+ G Sbjct: 66 -NKNSKTTQ--AMVLCPTRELSIQVAEEISKLAKYKGVTVVPIYGGQPIERQIRSLKMGV 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGR+ DHI+ K L ++K VLDEADEM D+GFR+DIE I+ P +R+ F Sbjct: 123 QVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQTTFF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + A YQ + + + + + + + + + IL K Sbjct: 183 SATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRILDVQNPK 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VFC+T+ V T L + L G+L Q +R + R+ + +ATDVAA Sbjct: 243 LTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RGID+ D++LVI+ ++ + E +HR GRT RAGR+G ++ FV P+ M ++ + + Sbjct: 303 RGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQ-IQKYTK 361 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAK-HDPEKIAAG 419 + P+++ + +R +R ++D + I +E ++++L+++ + P IAA Sbjct: 362 TKIEKRDMPTLKDLIKRHEERFMED--IKEEINKNEHTKELNLINILMSEDYSPIDIAAC 419 Query: 420 FLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 L+ + L EE+ V + + + D + GG S K S +++GS++ Sbjct: 420 LLKHYNENNKLNNHEELIDVDIKKNKKKGNDKTSISNKGGKSNVTEKNSGRIYINIGSRK 479 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 R ++ LC + I+ + IG I + +FV + + + Sbjct: 480 GVSQRHIVSALCNDANISARDIGDIEIFEKFSFVNIHKNAL 520 >gi|116617572|ref|YP_817943.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096419|gb|ABJ61570.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 528 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 153/426 (35%), Positives = 233/426 (54%), Gaps = 13/426 (3%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + Q I +A++ GYV T +QE + L +DV+ AQTG+GKT AFGL + Sbjct: 1 MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + N AL ++PTRELA+Q EL+ L V V V GG + R+ + Sbjct: 61 EHIDLNNKNIQ------ALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQ 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L++ I+VGTPGRL DHI K + I +++ +VLDEADEML++GF DDIE I+ +P + Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDNVRTLVLDEADEMLNMGFLDDIEAIISKTPAE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + + + I ++ +D V + +++ + + I Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 K AIVF T+ V ++ L + L G+L+QQ RS L + + + Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356 ATDVAARG+D+ D+ V + ++ +PE+ +HR GRTGRAG KG+SV FV P M R Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAV 354 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEK 415 E L ++ + EPA +A + + +D+ + E + VD L AK+ E+ Sbjct: 355 EDLTKKRMTPL--EPASLKDARIGKINNAAGEVAKLIDTTEVSEIQSQVDALTAKYSAEQ 412 Query: 416 IAAGFL 421 +AA L Sbjct: 413 LAAAVL 418 >gi|60679730|ref|YP_209874.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC 9343] gi|253564478|ref|ZP_04841935.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5] gi|265764859|ref|ZP_06093134.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16] gi|60491164|emb|CAH05912.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC 9343] gi|251948254|gb|EES88536.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5] gi|263254243|gb|EEZ25677.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16] gi|301161192|emb|CBW20730.1| putative RNA helicase dead-box protein [Bacteroides fragilis 638R] Length = 647 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 148/413 (35%), Positives = 228/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I +A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 12 MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 70 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 71 PLIQKINVKN------RIPQSLVLCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 123 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K ++++ + VV+DEADEML++GF D I IL Sbjct: 124 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILA 183 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY +A + I +N S++ + V D+ A Sbjct: 184 DVPQERNTLLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDKYAA 243 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 244 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 303 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 304 IQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 363 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + P+ + I E+ +++ D L+ ++ +E+ + D + Sbjct: 364 KMREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFM 413 >gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 518 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 153/423 (36%), Positives = 241/423 (56%), Gaps = 19/423 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A++E G+ T +Q + L +D++ AQTG+GKT AFGL L + + E D Sbjct: 11 PKVL-QAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPLINKIPKEED 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R +AL + PTRELA+QV E+ L G GG + R+ R L+ I Sbjct: 70 RI------VALVMTPTRELAIQVAEEIGKLSRFKGTRSLPIYGGQDIVRQIRALKKKPQI 123 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++GTPGRL DHI K + + +K VVLDEADEMLD+GF DDI+ IL P+ R+ ++FSA Sbjct: 124 IIGTPGRLLDHINRKTIKLDDVKTVVLDEADEMLDMGFMDDIQSILKLVPEDRQTMLFSA 183 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I LA+ + K+ V++ + ID + V + +A+ +L + A Sbjct: 184 TMPANIQKLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEVHERQKFDALTRLLDMESPELA 243 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF T+ V ++ L + + L G+LSQ +R N ++ RDG V +ATDVAARG Sbjct: 244 IVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARG 303 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLFREAN 364 +D+ + V++ +L +PE+ +HR GRTGRAG++G++ FV P+ M R ER+ R Sbjct: 304 LDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREMDHLRFIERITRH-- 361 Query: 365 VSVVWEPAPSV-EAIRERDAQRILQDPL--FLDSIQGDEKKMVDV-LLAKHDPEKIAAGF 420 + +P PS+ EAI + QRI+ + L +++ + +E K + + LL ++D + A Sbjct: 362 -KIARKPLPSIAEAIEGK--QRIIAERLIELVENGELNENKGIAIQLLEQYDSVNLLAAA 418 Query: 421 LRI 423 ++ Sbjct: 419 FKL 421 >gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1] gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1] Length = 931 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 174/583 (29%), Positives = 286/583 (49%), Gaps = 53/583 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A++ GY T +Q I+ L +DVL +QTG+GKT AF L + S + + R Sbjct: 315 VQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSRVDVRSRR-- 372 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L +APTRELA+QV R A +G VA GG + + L+ G +VV Sbjct: 373 ----PQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQVVV 428 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH++ L++ L +VLDEADEML++GF +D++F+L+ SP+ R++ +FSAT+ Sbjct: 429 GTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALFSATL 488 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +A Y D R+ I S+ + + RA+ V+ D+ +A+ IL IV Sbjct: 489 PKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETDGVIV 548 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ S + L++ F +AL+G++ Q+ R + ++ G+ V +ATDVAARG+D Sbjct: 549 FTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLD 608 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN---VS 366 +P + V + +L + E+ +HR GRTGRAGR G ++ + N QRR R + Sbjct: 609 VPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFL-TNAQRRQLRFIENTTKQPIE 667 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV-DVLLAKHDPEK------IAAG 419 ++ P+V I E +R Q + + D+ V ++A++ E IAA Sbjct: 668 II--DIPTVADINEARVRRFKQ---RITDVSADQDLTVYKDMIAQYAEESGKPMEMIAAA 722 Query: 420 FLRIHRAGLC--------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK------- 464 + + G E + GRD F + R+ G D + Sbjct: 723 LAEMSQNGRPFLLKERPKKQRERSDRDNSRGRDSFDSNDRSGNRGSFGDDRPRRPKGRPL 782 Query: 465 -----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSA 515 G + + L VG + + ++ + +GI+ + IG I ++ T ++ + + Sbjct: 783 TPVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDLPEGMPS 842 Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFRG------YKSSGFK 552 D LR+T K + L+ G DF G ++ GF+ Sbjct: 843 DIYQTLRKTWVAGKRLNLEEAGDVVDDFEGDGGRSNFRKEGFR 885 >gi|251793160|ref|YP_003007888.1| cold-shock deAd box protein a [Aggregatibacter aphrophilus NJ8700] gi|247534555|gb|ACS97801.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Aggregatibacter aphrophilus NJ8700] Length = 600 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 185/589 (31%), Positives = 299/589 (50%), Gaps = 41/589 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I A+S+ G+ + +Q+ + L +DVL AQTGSGKT AF L + + Sbjct: 13 LPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPILA------ 66 Query: 67 DRFSPASA-PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + PA P L +APTRELA+QV E YAK G+ V GG + R L+ Sbjct: 67 -KIDPAEKHPQLLVMAPTRELAIQVADACEHFVKYAK-GINVVTLYGGQRYDIQLRALKQ 124 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DH+R L+++ LKA+VLDEADEML +GF DD+E ++ P+ + Sbjct: 125 GAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEHHQTA 184 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + K + KD V I + + DI V +++A++ L Sbjct: 185 LFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGLRKNDALLRFLEVED 244 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+F T+ T++L +H F+ AL+G+++QQ R L +R G + +ATDV Sbjct: 245 FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVATDV 304 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLF 360 AARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L Sbjct: 305 AARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNVEHLI 364 Query: 361 REANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 ++ N+ V P V +A R + + + L ++ + + D+ A E IAA Sbjct: 365 KK-NIEEVKLPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQEDIAAA 423 Query: 420 FLRIHRAG---LCAPEEIT--------PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468 + + + + P+ + + + R + G G N + Sbjct: 424 MMMLLQGKQKLILPPDPVVDKKARRDRGERGDRRENPRSAERRGERKGYG---NPQPMDL 480 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---R 523 + + VG E R ++ + IN + IG I++ D + +E+ G+ +LL+ + Sbjct: 481 YRIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELP-QGMPKELLQQFGK 539 Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572 T L+K +++ ++G K D RG + G K + G + K FKG K Sbjct: 540 TRVLNKQMRMSFIGEAKGD-RGGDNFGAK----RHGGRFKEKGFKGDRK 583 >gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99] gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99] Length = 611 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 146/376 (38%), Positives = 212/376 (56%), Gaps = 11/376 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72 +L E GY T +Q A + P + KD+L AQTG+GKT AF L L S + PA Sbjct: 20 SLDELGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLSNI-------DPAI 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +AP L +APTRELAVQV E YAK G+ V GG S+H++ L+ G ++VG Sbjct: 73 NAPQILVLAPTRELAVQVA-EAFATYAKFVKGLHVLPIYGGQSMHQQLNALRRGPQVIVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R L + LKA+VLDEADEML +GF DDIE+IL+ +PK+R++ +FSAT+ Sbjct: 132 TPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A Y D + V IA+ + R V V+ ++ A+V +L + I+F Sbjct: 192 EQIKRVANKYLTDPIHVKIAATTATVETTEQRFVQVSQHNKLEALVRVLEVEKTEGIIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR S + L + L G+++QQ R A++ ++ G + IATDVAARG+D+ Sbjct: 252 VRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSLDILIATDVAARGLDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + VI+ ++ + E +HR GRTGRAGR GM++ + R + R + Sbjct: 312 ERIRHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPM 371 Query: 371 PAPSVEAIRERDAQRI 386 PS E++ ER R+ Sbjct: 372 DVPSPESVTERRLSRL 387 >gi|53711460|ref|YP_097452.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46] gi|52214325|dbj|BAD46918.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46] Length = 636 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 148/413 (35%), Positives = 228/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I +A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLIQKINVKN------RIPQSLVLCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K ++++ + VV+DEADEML++GF D I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY +A + I +N S++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 IQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + P+ + I E+ +++ D L+ ++ +E+ + D + Sbjct: 353 KMREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFM 402 >gi|317477978|ref|ZP_07937161.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] gi|316905892|gb|EFV27663.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] Length = 650 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 146/412 (35%), Positives = 227/412 (55%), Gaps = 15/412 (3%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + N P +L + PTREL +Q+ +L ++ G+ V GG S+ Sbjct: 60 PLIQKINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ G HI+V TPGRL D + K ++++ ++ VV+DEADEML++GF D I IL Sbjct: 114 SQIRALKRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILAD 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P++R L+FSAT+SP I ++K Y +DA + I +N S++ + A V D+ A+ Sbjct: 174 VPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAKDKYAAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 234 KRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNL 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + + Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + R + P+ + I E+ +++ D L+ ++ +E+++ D + Sbjct: 354 MREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEEIADFM 402 >gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA] gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA] Length = 528 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 166/514 (32%), Positives = 259/514 (50%), Gaps = 31/514 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I +A+ E G+ + +Q A + L +D++ AQTG+GKT AFG+ L + + Sbjct: 10 NINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEKMDTK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 R P A+ + PTRELA+QV E+ L AK G V GG ++ + R L+ Sbjct: 70 VKR------PQAMILCPTRELAIQVADEIRKL-AKFMHGAKVLPIYGGQNITNQIRSLKT 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA+I+VGTPGR+ DH+R L + LK VVLDEADEML++GFR+DIE IL P++R+ L Sbjct: 123 GANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI + K YQKD+ + + + +I+ V + + +L H Sbjct: 183 LFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQKVEVLCRLLDMHS 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K +IVFC+T+ V T L + + G+L Q +R ++ R GR + +ATDV Sbjct: 243 PKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D++ V + +L + E +HR GRTGRAGR G + + + + R Sbjct: 303 AARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQRYC 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHD--PEKIAAG 419 + P PS+ ++ A++ L++ L +K M+D + + D +IAA Sbjct: 363 KTKIKARPIPSLNDVQATRAEKSLEEITGLIEENNLDKYVDMLDEFINETDFTALEIAAA 422 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 FL+ + ++ + F G G +++G K+ Sbjct: 423 FLKKQ--------------ISENEEQEANQGEDFGDTGAE----AGMVRLFINIGKKKGV 464 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++ + S I+ +GAI V TFVEV Sbjct: 465 RPGDILGAIAGESSISGDLVGAIDVHDQYTFVEV 498 >gi|150400366|ref|YP_001324133.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus vannielii SB] gi|150013069|gb|ABR55521.1| DEAD/DEAH box helicase domain protein [Methanococcus vannielii SB] Length = 538 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 158/520 (30%), Positives = 272/520 (52%), Gaps = 14/520 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 AL ++G+ T +QE + ++ E D++ AQTG+GKT AFGL + T+ N R + A Sbjct: 16 ALEKKGFTEPTPIQEKAIPILIKGEMDIVGQAQTGTGKTAAFGLPIIETI-DTNSRNTQA 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA+QV E++ L + + GG S+ R+ ++L+ G IVVGTP Sbjct: 75 -----LILTPTRELAIQVAEEIDSLKGSRRLNIFPVYGGQSIDRQIKELKRGVQIVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI + + + ++ VVLDEADEML++GF DD+E IL S ++RML+FSAT+ + Sbjct: 130 GRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVNTEKRMLLFSATLPDS 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+NY +D + + + + D ++ D+ + I+ ++FC Sbjct: 190 IMKLAENYMRDYETIKVKKQQLTTNLTDQSFYEISPRDKFELLSRIMDTEKEFYGLIFCK 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+A V + L E + L G+++Q +R L + R V +ATDVAARGID+ + Sbjct: 250 TKADVDDLSARLVERGYPAEGLHGDMTQAQREKTLDKFKRRRTTVLVATDVAARGIDINE 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L V++ +L NPE+ +HR GRTGRAG++G ++ + + R+ + + + A + E Sbjct: 310 LTHVVNYDLPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYILKIAKTEIRREEV 369 Query: 373 PSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430 P ++ + ++I D L G+ +KM + LL + + + I A L+ Sbjct: 370 PDIKDVIGAKRRKIKTDIKTLMESGKFGEYEKMAEELLEEGEAKDIIAAILKHAFKDEFL 429 Query: 431 PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-FSLSVGSKQKAEARWLMPMLC 489 E + G+ + R+ R +F G + +++G K + L+ + Sbjct: 430 AENYKKI----GKSSSQSSQRSDSQSNRKRQSFDGENIRLFVALGKLDKMNPKKLVEYIS 485 Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529 + S + + I ++V +FV VS++ + + + K +K Sbjct: 486 KKSEVKGRDIDEVKVFEKFSFVTVSSENAETIIDSFKNEK 525 >gi|170717335|ref|YP_001784445.1| DEAD/DEAH box helicase domain-containing protein [Haemophilus somnus 2336] gi|168825464|gb|ACA30835.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336] Length = 601 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 180/588 (30%), Positives = 299/588 (50%), Gaps = 42/588 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I A+SE G+ + +Q+A + L DVL AQTGSGKT AF L L + + N Sbjct: 13 LPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLLAKI-DTN 71 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +++ P L +APTRELA+QV E ++ GV + GG + R L+ GA Sbjct: 72 EKY-----PQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLRALKQGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S+L+++VLDEADEML +GF DD+E ++ P++ + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + K + + V I S R DI V ++ A++ L Sbjct: 187 SATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEALLRFLEVEDFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ + T++L +H F+ AL+G+++QQ R L +R+G + +ATDVAA Sbjct: 247 AAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR----AERLF 360 RG+D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ FV P+ +RR ERL Sbjct: 307 RGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPK--ERRLLGNIERLM 364 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 ++A V +++ R ++ + L ++ + D+ A D E IAA Sbjct: 365 KKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAM 424 Query: 421 LRI--HRAGLCAPEEITPV---------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469 L + + L PE+ PV G R +++ R+ + G G + + Sbjct: 425 LMLLQGKQKLILPED--PVFEKHSRRNDRRERGERRGKENPRSERHGYGIP---QPMDLY 479 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTV 525 + VG E R ++ + I + IG I++ + +E+ + + + +T Sbjct: 480 RIEVGRCDGVEVRHIVGAIANEGDIQSRYIGHIKLYDTYSTIELPQGMPKELLQVFAKTR 539 Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR-FKGASK 572 L+K +++ ++ + SG K K R++R F+G K Sbjct: 540 VLNKQMRMSFVSAVNSEEEFEAGSGGKRKG-------RYEREFRGGRK 580 >gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 605 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 212/376 (56%), Gaps = 11/376 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L +++ P + Sbjct: 20 ALDELGYEKPTPIQAASIDPLMANKDILGQAQTGTGKTGAFALPLLNSI-------DPTT 72 Query: 74 -APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP L +APTRELAVQV Y+K G+ V GG S+ ++ L+ G I+VG Sbjct: 73 NAPQILVLAPTRELAVQVAEAFAS-YSKFMKGMHVLPIYGGQSMQQQLNSLRRGPQIIVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R L ++ LKA+VLDEADEML +GF DDIE+IL+ +P++R++ +FSAT+ Sbjct: 132 TPGRVMDHMRRGTLKLATLKAMVLDEADEMLKMGFIDDIEWILEHTPQERQLALFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A Y + V V IA+ I+ R V V+ ++ A+V +L + I+F Sbjct: 192 EQIKRVANKYLDNPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGIIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR S + L + L G+++QQ R A+ ++ G+ + IATDVAARG+D+ Sbjct: 252 VRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIATDVAARGLDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + V++ ++ + E +HR GRTGRAGR GM++ + R + R + Sbjct: 312 ERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPM 371 Query: 371 PAPSVEAIRERDAQRI 386 PS E + ER R+ Sbjct: 372 DVPSPETVTERRLSRL 387 >gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays] gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays] Length = 613 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 218/359 (60%), Gaps = 11/359 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E L+ RG L +Q A+L P ++ KD++ A+TG+GKT+AFG+ + +L+ N+ Sbjct: 104 PRIV-EKLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSYNE 162 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 + PLA+ +APTRELA QV +E + ++ + +C+ GGV ++++ R L G Sbjct: 163 KNGNGRNPLAIILAPTRELARQVEKE----FRESAPLDTLCVYGGVPINQQMRALNYGVD 218 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVVGTPGR+ D +R LN+S ++ VVLDEAD+ML +GF +D+E I++ P+ R+ ++FS Sbjct: 219 IVVGTPGRVIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFS 278 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243 AT+ I ++ Y KD V +++ ++ Q I ++ + + I +++ H Sbjct: 279 ATMPSWIRKISNKYLKDPVIIDLVGDSDQKLPEGISLYSIASDNFGKPSIIGPLIKEHAN 338 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ R V+ +Q AL G++SQ +R L RDGR + +ATDV Sbjct: 339 VGKCIVFTQTKREADRLAYVMGRS-YQCQALHGDISQNQRERTLSGFRDGRFNILVATDV 397 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 AARG+D+P+++LV+H E+ + E +HRSGRT RAG+KG ++ + Q RA R+ + Sbjct: 398 AARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYE-QTRAVRVIEQ 455 >gi|331092062|ref|ZP_08340893.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402263|gb|EGG81834.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium 2_1_46FAA] Length = 528 Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 159/528 (30%), Positives = 264/528 (50%), Gaps = 38/528 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ G+ + +Q + L KD++ AQTG+GKT AFG+ L + +N + Sbjct: 15 IQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLLQKVNPKNKKLQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + + PTRELA+QV E+ L G+ V GG + ++ R L+NG I++ Sbjct: 75 ------GIVLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKNGTQIII 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+R K + + + VVLDEADEML++GFR+DIE IL+ P++R+ ++FSAT+ Sbjct: 129 GTPGRVMDHMRRKTIKMEQVHTVVLDEADEMLNMGFREDIETILEGVPEERQTVLFSATM 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + K +QK A + + + +I+ V +++ + +L + K ++V Sbjct: 189 PKAIMEITKKFQKKAEVIKVTKKELTVPNIEQFYYEVKPKNKEEVLARLLDIYTPKLSVV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V L + L G++ Q +R +Q R G+ + +ATDVAARGID Sbjct: 249 FCNTKKQVDLLVTSLLGRGYFAAGLHGDMKQVQRDRVMQGFRSGKTDILVATDVAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + ++E V + +L + E +HR GRTGRAGR G S + + + + R + Sbjct: 309 VDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKEIQRYCKTKIYA 368 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSI--QGDEKKMVDVLLAK-----HDPEKIAAGFLR 422 + PS+ + + IL D +D I D M++ + + + +AA FL+ Sbjct: 369 QKVPSLNDVATTKMENILDD---IDQIIVNEDLTLMINAIQERVNDSDYTAMDMAAAFLK 425 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 + G+ + EE + G + G +++G KQKA+ Sbjct: 426 MC-TGMTSEEEQEEMDF-----------------GDTGAEEPGMVRLFINIGKKQKAKPG 467 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS---ADGVDLLRRTVKL 527 ++ L +G+ + IG I + TFVEV A V L + VK+ Sbjct: 468 DILGALAGETGMPGKLIGTIDMFDKYTFVEVPREYAKDVLLAMKNVKI 515 >gi|325261674|ref|ZP_08128412.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5] gi|324033128|gb|EGB94405.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5] Length = 527 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 160/528 (30%), Positives = 268/528 (50%), Gaps = 48/528 (9%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE++ P+++ +A+ + G+ + +Q + KD++ AQTG+GKT AFG+ L Sbjct: 6 FEDLGLCPEIV-KAVKKMGFEEASPIQAKAIPVMKSGKDIIGQAQTGTGKTAAFGIPLLE 64 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRER 118 + +N + A+ + PTRELA+QV E+ L AK G+ V GG + + Sbjct: 65 KIEPKNKKLQ------AVVLCPTRELAIQVAEEIRNL-AKYMHGIKVLPIYGGQEIVTQI 117 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L++G +++GTPGR+ DH+R K + + + +VLDEADEML++GFR+DIE IL+ P+ Sbjct: 118 RSLKSGTQLIIGTPGRVMDHMRRKTIKMDEVHTIVLDEADEMLNMGFREDIETILEGVPE 177 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT+ AI + K +QK+A V + + +I+ V ++ + + Sbjct: 178 ERQTVLFSATMPQAILDITKRFQKNAEIVKVTKKELTVPNIEQYYYEVKPKSKEEVLARL 237 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + K ++VFC+T+ V L + L G+L QQ+R +Q R G+ + Sbjct: 238 LDIYSPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQQQRDRVMQGFRSGKTDIL 297 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARGID+ ++E V + +L + E +HR GRTGRAGR+G S + + + Sbjct: 298 VATDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRSFSFVSGKEVYKLKE 357 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI----------QGDEKKMVDVLL 408 + R + + PS+ + + IL + +D+I Q E K+ + Sbjct: 358 IQRYCKTKIYAQKVPSLNDVANTKMENILGE---IDNIIETEDLTKYLQAIENKVNESDY 414 Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468 D +AA FL+ L SG++ + F G G Sbjct: 415 TAMD---MAAAFLK----------------LSSGQNEVSPEEMEFGDTGAEE---AGMVR 452 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +++G K KA+ ++ + SGI + IG+I + TFVEV + Sbjct: 453 LFINIGKKNKAKPGDIVGAIAGESGIPGKLIGSIDMYDKYTFVEVPKE 500 >gi|298483821|ref|ZP_07001993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. D22] gi|298270008|gb|EFI11597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. D22] Length = 643 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 140/354 (39%), Positives = 204/354 (57%), Gaps = 14/354 (3%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S ++ VV+DEADEML++GF D I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY ++A + I +N +++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAII 346 >gi|237716826|ref|ZP_04547307.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405596|ref|ZP_06082146.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644524|ref|ZP_06722278.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC 2a] gi|294805785|ref|ZP_06764662.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens SD CC 1b] gi|229442809|gb|EEO48600.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356471|gb|EEZ05561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640077|gb|EFF58341.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC 2a] gi|294447006|gb|EFG15596.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens SD CC 1b] Length = 643 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 140/354 (39%), Positives = 204/354 (57%), Gaps = 14/354 (3%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S ++ VV+DEADEML++GF D I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY ++A + I +N +++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAII 346 >gi|124265824|ref|YP_001019828.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1] gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1] Length = 494 Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 133/343 (38%), Positives = 200/343 (58%), Gaps = 2/343 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 A++E GY+ +T +Q + L +DV+ +AQTG+GKT AF L L +L E+ SPA Sbjct: 33 AVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQKMLKHESSSTSPA 92 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL +APTRELA QV ++ T + V GG+ + + +L+ G +++ T Sbjct: 93 RHPVRALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTAELKRGVEVLIAT 152 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI K ++S ++ VVLDEAD MLD+GF D++ IL PK R+ L+FSAT SP Sbjct: 153 PGRLLDHIEAKNCSLSQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRQTLLFSATFSP 212 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA +Y +D + V A N S ++ R V D+ NA+ +LR +IVF Sbjct: 213 EIKKLANSYLQDPILVETARPNATASTVEQRFYRVEDDDKRNAVKQLLRTRAITQSIVFV 272 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +++ +R + + AL G+ SQ ER AL + G + +ATDVAARG+D+ Sbjct: 273 NSKLGAARLARAFERDGLRTQALHGDKSQDERLKALAAFKAGEVDLLVATDVAARGLDIA 332 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 DL V + ++ N E+ +HR GRTGRAG G+++ ++ ++ R Sbjct: 333 DLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAITLVSRDDAR 375 >gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens] Length = 793 Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 138/382 (36%), Positives = 218/382 (57%), Gaps = 16/382 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP + +AL++RG L +Q A+L P ++ +D++ A+TG+GKT+AFG+ + + ++ EN Sbjct: 144 IPDAVADALAKRGITQLFPIQRAVLEPAMQGRDLIGRAKTGTGKTLAFGIPIINNIIREN 203 Query: 67 DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121 + A AP AL +APTRELA QV RE ++ +C+ GGV++ ++R L Sbjct: 204 EENRVARRSGRAPRALVLAPTRELAKQVEREF---MESAPMLSTICVYGGVAISSQQRLL 260 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G I VGTPGR+ D I L + ++ +VLDEAD+ML +GF +D+E IL+ P +R+ Sbjct: 261 TRGVDIAVGTPGRIIDLINRGSLRLQEVRFLVLDEADQMLAVGFEEDVEQILEQMPNQRQ 320 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR- 240 ++FSAT+ + L++ Y DA+ +++ E+ + + R L A++ A +IL Sbjct: 321 SMLFSATMPTWVKKLSRKYLHDALTIDLVGESDEK--LADRIKLYAVATVPQAKRSILND 378 Query: 241 ----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 Y IVF T+ +A L AL G++SQ +R L R+G Sbjct: 379 LIAVYGKGGKTIVFTQTKRDADDVATAMARTL-GCEALHGDISQSQREKTLNAFREGNFS 437 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 V +ATDVAARG+D+P+++LVIH E+ ++PE +HRSGRTGRAG+ G ++ + R Sbjct: 438 VLVATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRTGRAGKDGTAILMYSDRQTRTM 497 Query: 357 ERLFREANVSVVWEPAPSVEAI 378 + R+ AP VE + Sbjct: 498 RLIERDVGCKFTKISAPRVEDV 519 >gi|150020730|ref|YP_001306084.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho melanesiensis BI429] gi|149793251|gb|ABR30699.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis BI429] Length = 514 Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 157/434 (36%), Positives = 240/434 (55%), Gaps = 27/434 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A++E+G+ T VQ+ ++ P L +EK+++V A+TG+GKT AFG+ L L Sbjct: 15 AINEKGFEKPTPVQKRVI-PILLNKEKNLIVQAKTGTGKTAAFGIPLIELL-------ES 66 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L K ++ V GG S+ R+ L+ G IVVGT Sbjct: 67 KGYVQAIILTPTRELALQVSEEINSLKRKRLKILPVY-GGQSISRQIEHLKRGVDIVVGT 125 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ K +++S ++ +LDEADEMLD+GF DD+E IL S+ ++ LMFSATI Sbjct: 126 PGRILDHLERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKSTSDEKIFLMFSATIPR 185 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LAK Y K+ + IA + + + + + +D+ A+ I+ +VFC Sbjct: 186 RIIDLAKKYIKNYEVIKIADKQLTTNLTEQIYIELNENDKFEALCRIIDVEDDFYGMVFC 245 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + L E + AL G+ SQ +R L+ ++ R + +ATDVAARGID+ Sbjct: 246 RTKVEVDNVSSKLIERGYDAEALHGDFSQYQRERVLKKFKEKRINILVATDVAARGIDIS 305 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 L VI+ + NPE+ +HR GRTGRAGR+G+++ FV P+ R+ R+ + + + Sbjct: 306 GLTHVINYSIPLNPEHYVHRVGRTGRAGREGVAITFVTPKEY-RQLFRIKKFSKAKIKEG 364 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-------MVDVLLAKHDPEKIAAGFLRI 423 PSVE I ++RI + L +EKK + D LL K +P ++ A L + Sbjct: 365 KIPSVEQIIRAKSERIKSELL------KEEKKLPNIYYNLADELLKKTNPREVIAKLLNM 418 Query: 424 HRAGLCAPEEITPV 437 L PE+ V Sbjct: 419 SFKSL-NPEKYEKV 431 >gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2] gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2] Length = 453 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 139/361 (38%), Positives = 210/361 (58%), Gaps = 4/361 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPASAPL- 76 GY ++T +Q + L KDV+ +AQTG+GKT AF L L L+ EN SPA P+ Sbjct: 2 GYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPARHPVR 61 Query: 77 ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL + PTRELA QV +++ LYAK T + V GG+ + + +L+ G ++V TPGRL Sbjct: 62 ALVLLPTRELADQVAQQIA-LYAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRL 120 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 DHI K + ++ ++ VVLDEAD MLD+GF D++ IL PK R L+FSAT SP I Sbjct: 121 LDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSATFSPEIKR 180 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 LA +Y +D V + +A N S ++ R V D+ AI ++L+ + A +F +++ Sbjct: 181 LAGSYLQDPVTIEVARPNETASTVEQRFYKVTDDDKRYAIRSVLKERDIRQAFIFSNSKL 240 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 +R T+ L + AL G+ SQ ER AL+ + G + + TDVAARG+D+ D+ Sbjct: 241 GCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARGLDIKDVPA 300 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375 V + ++ N E+ +HR GRTGRAG G++V ++ + R + + + EPAP + Sbjct: 301 VFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKKIEVEPAPML 360 Query: 376 E 376 + Sbjct: 361 D 361 >gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa] gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa] Length = 735 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 129/389 (33%), Positives = 223/389 (57%), Gaps = 12/389 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ + + L RG +L +Q A+L P L +D++ A+TG+GKT+AFG+ + L + Sbjct: 103 LPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTLAFGIPIIKRLTEDA 162 Query: 67 D----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121 + + P L +APTRELA QV +E++ + VC+ GGVS ++ L Sbjct: 163 ELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYATQQNAL 219 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G +VVGTPGR+ D ++G L + ++ +VLDEAD+ML GF +D+E IL+S P KR+ Sbjct: 220 SRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVEVILESLPSKRQ 279 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNIL 239 ++FSAT+ + LA+ Y + +++++ E + I A+ + + + +++ Sbjct: 280 SMLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAEGIKLYAISTTATSKRTILSDLV 339 Query: 240 R-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 Y + I+F T+ + L + + AL G++SQ +R L R G+ V Sbjct: 340 TVYAKGEKTIIFTRTKRDADEVSMALTQSIASE-ALHGDISQHQRERTLNGFRQGKFTVL 398 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVA+RG+D+P+++L+IH EL ++PE +HRSGRTGRAG++G ++ + + +R Sbjct: 399 VATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRS 458 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL 387 L R+A + P++E + E ++++ Sbjct: 459 LERDAGCKFEFVSPPAIEELLESSTEQVV 487 >gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative symbiont of Hydra magnipapillata] Length = 520 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 136/341 (39%), Positives = 203/341 (59%), Gaps = 4/341 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69 + A++E GY +T +Q + L KDV+ +AQTG+GKT AF L L L+ EN Sbjct: 33 LARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLLQRLMKHENAST 92 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHI 127 SPA P+ AL + PTRELA QV ++++ LYAK T + AV GG+ + + +L+ G + Sbjct: 93 SPARHPVRALVLLPTRELADQVAQQVK-LYAKYTNLRSAVVFGGMDMKPQTLELKAGVEV 151 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK R L+FSA Sbjct: 152 LVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKTRTTLLFSA 211 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T SP I LA +Y ++ + + +A N S ++ V D+ +A++ I+R K A Sbjct: 212 TFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYRVNDDDKRHALLQIVRSKDIKQA 271 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 VF +++ +R T+ L + AL G+ SQ ER AL+ + G + + TDVAARG Sbjct: 272 FVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKKGEVDLLVCTDVAARG 331 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+ D+ V + ++ N E+ +HR GRTGRAG G++V + Sbjct: 332 LDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASGLAVSFV 372 >gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1] gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1] Length = 623 Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 213/375 (56%), Gaps = 10/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L + + ++ + Sbjct: 20 ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------T 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELAVQV YAK V GG S+ ++ L+ G ++VGT Sbjct: 73 TPQILVLAPTRELAVQVAEAFSS-YAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + L+A+VLDEADEML +GF DDIE+IL+ +P +R++ +FSAT+ Sbjct: 132 PGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALFSATMPE 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + K+A ++IA+ + I+ R V V+ ++ A+V +L + I+F Sbjct: 192 QIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A++ +++G+ + IATDVAARG+D+ Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 312 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMK 371 Query: 372 APSVEAIRERDAQRI 386 PS E + ER R+ Sbjct: 372 VPSPETVAERRLSRL 386 >gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-23m63] gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08] gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07] gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08] gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07] Length = 537 Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 164/528 (31%), Positives = 265/528 (50%), Gaps = 46/528 (8%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++P + I +A++E G+ + +Q + L KDV+ AQTG+GKT AF + + T Sbjct: 6 FEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILET 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120 + N A+ + PTRELA+QV E+ L + G+ GG + R+ + Sbjct: 66 IDPNNRSLQ------AVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKS 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++G +V+GTPGR DHI K L + ++K ++LDEADEMLD+GFR+DIE IL P++R Sbjct: 120 LKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEER 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + FSAT+ I L K YQKD + + + S+ + S++ + ++ Sbjct: 180 QTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLEVLCRLVD 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + K ++VFC+T+ L + AL G+L Q +R + R+G + +A Sbjct: 240 VYDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359 TDVAARGID+ D+E V + +L + E +HR GRTGRAGR+GMS FV + M R+ + + Sbjct: 300 TDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEM-RKMKDI 358 Query: 360 FREANVSVVWEPAPSVEAIRERDA--------QRILQDPL-----FLDSIQGDEK-KMVD 405 R ++ P++ + E+ Q I + L +L++ DE MVD Sbjct: 359 ERYTKSKLIKHNIPTITDVEEKKVGTFFAQVKQTIEEGHLTKQLQWLENFCNDEDYAMVD 418 Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465 + A K++ G P R R D + G G++D G Sbjct: 419 IAAALV---KLSLGEEMKEEIIEEKPR------------RERGDRKG---GTGAKD---G 457 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +++G Q+ +A+ ++ + GI + +G I + TFVE+ Sbjct: 458 MIRLFINIGRNQRVQAKDIVGAIAGEVGIPGKVVGTIDIYDKYTFVEI 505 >gi|295090645|emb|CBK76752.1| Superfamily II DNA and RNA helicases [Clostridium cf. saccharolyticum K10] Length = 553 Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 167/554 (30%), Positives = 285/554 (51%), Gaps = 25/554 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A+++ G+ + +Q + +L KD++ AQTG+GKT AFG+ L + + Sbjct: 10 NLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIPLLEKIDPK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 N + A+ + PTRELA+QV E+ L G+ V GG + ++ R L++G Sbjct: 70 NKKLQ------AVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKDG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +++GTPGR+ DH+R K + + VVLDEADEML++GF +D+E IL P++R+ +M Sbjct: 124 VQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQTVM 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ AI +AK +QKD V + ++ + V ++ + +L + Sbjct: 184 FSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLLDMYAP 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K ++VFC+T+ V L + L G+L Q +R + R GR + +ATDVA Sbjct: 244 KLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDILVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ D+E V + ++ + E +HR GRTGRAGR+G + ++ + + R Sbjct: 304 ARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCK 363 Query: 365 VSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIA 417 +V +P PS++ + E A +IL + + D+ D +++D++ K + +A Sbjct: 364 TKIVPQPIPSIDDVTEIKADKILCQAEEILQDN---DMDRLIDIIERKVLEEDYTTLDLA 420 Query: 418 AGFLRI--HRAGLCAPEEITPV----SLVSGRDR-FRDDSRAFKVGGGSRDNFKGSSWFS 470 AG LRI E+ P+ L RDR + + G G+R + Sbjct: 421 AGLLRIIMGEDNEDIIEDSRPLRSLDDLGDWRDRNYGRGRGSRSGGRGNRSGGDDMARLF 480 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530 +++G Q + ++ + SG+ + +G+I + TFVEV + D++ + +K D Sbjct: 481 INIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPREQADIVLQAMK-DAR 539 Query: 531 IQLKYLGGEKPDFR 544 I+ K + EK + R Sbjct: 540 IKGKNIHIEKANRR 553 >gi|294142501|ref|YP_003558479.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12] gi|293328970|dbj|BAJ03701.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12] Length = 617 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 211/375 (56%), Gaps = 9/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 +L + GY T +Q A + P + KD+L AQTG+GKT AF L L ST+ S + Sbjct: 20 SLDDLGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLSTI------DSSLN 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQV E YAK G+ V GG S+H++ L+ G ++VGT Sbjct: 74 APQILVLAPTRELAVQVA-EAFASYAKHMKGLHVLPIYGGQSMHQQLNALRRGPQVIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + LKA+VLDEADEML +GF DDIE+IL+ +PK+R++ +FSAT+ Sbjct: 133 PGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A Y + V V IA+ I+ R V V+ ++ A+V +L + I+F Sbjct: 193 QIKRVANKYLTEPVHVKIAATTATVETIEQRFVQVSQHNKLEALVRVLEVESTEGIIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G + IATDVAARG+D+ Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGSLDILIATDVAARGLDVE 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + VI+ ++ + E +HR GRT RAGR GM++ + R + R + Sbjct: 313 RIGHVINYDIPYDTEAYVHRIGRTDRAGRSGMAILFVTHREMRMLRTIERATKSRISPMD 372 Query: 372 APSVEAIRERDAQRI 386 PS E++ ER R+ Sbjct: 373 VPSPESVTERRLSRL 387 >gi|260913800|ref|ZP_05920275.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325] gi|260632113|gb|EEX50289.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325] Length = 610 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 180/589 (30%), Positives = 296/589 (50%), Gaps = 46/589 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + +A+S+ G+ + +Q+ + L DVL AQTGSGKT AF L L + + + Sbjct: 13 LPEFLLDAVSDLGFETPSPIQQTCIPYLLDGNDVLGMAQTGSGKTAAFSLPLLAQIDLDK 72 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 P L +APTRELA+QV E YAK +V + GG + R L+ G Sbjct: 73 ------KYPQMLVMAPTRELAIQVADACEQFCKYAKNTRIVTL-YGGQRYDIQLRALKQG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR L++S+L+ +VLDEADEML +GF DD+E ++ P++ + + Sbjct: 126 AQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEEHQTAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + KD + I S + DI V +++A++ L Sbjct: 186 FSATMPEPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFLEVENF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L +H F+ AL+G+++QQ R L+ +R+G + +ATDVA Sbjct: 246 DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLERLRNGSLDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARG+D+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 306 ARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRNIEHLTK 365 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++A R + + L ++ + D+ A D E IAA L Sbjct: 366 KPITEVEVPNHEVLQACRREKFKAKITVQLEHHDLELYRSLLEDMFTADQDQEDIAAAML 425 Query: 422 RIHRAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGGGSRDNFKGSS-----------W 468 + + + I P + R R R+D R G R+N + + Sbjct: 426 MLLQG---KQKLILPPDPIIDRKTSRERNDRRE----RGGRENPRSAERRGYGNPQPMDL 478 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524 + + VG E R ++ + IN + IG I++ D + +E+ + +++ + Sbjct: 479 YRIEVGRLDGVEVRHIVGAIANEGDINSRYIGHIKLYDDHSTIELPQGMPKELLNIFGKA 538 Query: 525 VKLDKGIQLKYL----GG---EKPDFRGYKSSGFKSKNSQDGATKRFKR 566 ++K +Q+ ++ GG E+ DF G + SK G RF R Sbjct: 539 RVMNKQMQMSFVSAVNGGGNRERDDFGGDRRG---SKRKGRGEEPRFGR 584 >gi|295086065|emb|CBK67588.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens XB1A] Length = 641 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S + VV+DEADEML++GF + I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY ++A + I +N +++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + + P+ I ++ +++ D L+ ++ +E+++ D + Sbjct: 353 KMREIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFM 402 >gi|242278297|ref|YP_002990426.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638] gi|242121191|gb|ACS78887.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM 2638] Length = 521 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 174/536 (32%), Positives = 270/536 (50%), Gaps = 40/536 (7%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57 M+ F N+ I EAL ++G+ T +QE + L EKD++ AQTG+GKT AFGL Sbjct: 1 MEKFRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 + EN R A A+ + PTRELA+QV E+ V VA GG + + Sbjct: 61 II-----ENVR-EGAGHVQAIVLTPTRELAMQVADEIISFRGSRKVFVATVYGGQPMLPQ 114 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 + L+ GA IVVGTPGR+ DHIR K L++S + VLDEADEM ++GF +++ I++++ Sbjct: 115 LKALKRGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAG 174 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 + RR L+FSAT+ + +AK + D V++ E + + V DR A+ Sbjct: 175 EDRRTLLFSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCR 234 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ +VFC TRA R LAE + + G+LSQ R + L R R ++ Sbjct: 235 VVDAQPEFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKI 294 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARGID+PDL V++ L +P++ +HR GRTGRAG+KG++V +I + Sbjct: 295 LVATDVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLR 354 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI--QGDEKKMVDV---LLAKHD 412 + + + V +P P+++ + + R+ + L I G +D+ LL D Sbjct: 355 YITKITKLRVDKKPLPTIDQVIDVKKSRMGAE---LSEIVEAGKHLSYLDLAHELLEGVD 411 Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV---GGGSRDNFKGSSWF 469 P + A L+ + G+ D R+++ GG N +G F Sbjct: 412 PIEAVAALLKHSQGGVL-------------------DKRSYRKIEECGGPAAN-RGRVRF 451 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 + +G R L+ M+CR + IN I +++Q + V A D + R V Sbjct: 452 TAHIGRAHGMTPRKLVDMICRRARINPVRIQHVKIQGRQSTFTVPAGDSDNVMRAV 507 >gi|143456572|sp|Q0D8N0|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53 gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group] gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group] Length = 602 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 137/374 (36%), Positives = 219/374 (58%), Gaps = 11/374 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E L+ RG L +Q A+L+P ++ KD++ A+TG+GKT+AFG+ + +L N++ Sbjct: 95 IVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNG 154 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129 PLA+ +APTRELA QV +E + ++ + ++C+ GGV + + R L G +VV Sbjct: 155 SGRNPLAIILAPTRELARQVEKE----FKESAPLDSLCVYGGVPISHQMRALNYGVDVVV 210 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D +R LN+S ++ VVLDEAD+ML +GF +D+E I+++ P+ R+ ++FSAT+ Sbjct: 211 GTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATM 270 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-AKN 246 I + Y KD + +++ + Q I ++ + + + +++ H Sbjct: 271 PSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGK 330 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ R + + AL G++SQ +R L RDGR + +ATDVAAR Sbjct: 331 CIVFTQTKREADRLAYAMGRS-YACQALHGDISQNQRERTLSGFRDGRFNILVATDVAAR 389 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+P+++LVIH EL + E +HRSGRT RAG+KG S +I N Q RA R+ E ++ Sbjct: 390 GLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKG-SAILIYTNDQARAVRII-EQDIG 447 Query: 367 VVWEPAPSVEAIRE 380 + P +E E Sbjct: 448 CKFTELPKIEVADE 461 >gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630] gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-66c26] gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP 107932] gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-63q42] gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC 43255] gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-76w55] gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-97b34] gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-37x79] gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196] gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291] gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-32g58] gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile] gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196] gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291] Length = 537 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 164/528 (31%), Positives = 264/528 (50%), Gaps = 46/528 (8%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++P + I +A++E G+ + +Q + L KDV+ AQTG+GKT AF + + T Sbjct: 6 FEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILET 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120 + N A+ + PTRELA+QV E+ L + G+ GG + R+ + Sbjct: 66 IDPNNRSLQ------AVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKS 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++G +V+GTPGR DHI K L + ++K ++LDEADEMLD+GFR+DIE IL P++R Sbjct: 120 LKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEER 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + FSAT+ I L K YQKD + + + S+ + S++ + ++ Sbjct: 180 QTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLEVLCRLVD 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + K ++VFC+T+ L + AL G+L Q +R + R+G + +A Sbjct: 240 VYDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359 TDVAARGID+ D+E V + +L + E +HR GRTGRAGR+GMS FV + M R+ + + Sbjct: 300 TDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEM-RKMKDI 358 Query: 360 FREANVSVVWEPAPSVEAIRERDA--------QRILQDPL-----FLDSIQGDEK-KMVD 405 R ++ P++ + E+ Q I + L +L+ DE MVD Sbjct: 359 ERYTKSKLIKHNIPTITDVEEKKVGTFFAQVKQTIEEGHLTKQLQWLEGFCNDEDYAMVD 418 Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465 + A K++ G P R R D + G G++D G Sbjct: 419 IAAALV---KLSLGEEMKEEIIEEKPR------------RERGDRKG---GTGAKD---G 457 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +++G Q+ +A+ ++ + GI + +G I + TFVE+ Sbjct: 458 MIRLFINIGRNQRVQAKDIVGAIAGEVGIPGKVVGTIDIYDKYTFVEI 505 >gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans HB-1] gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans HB-1] Length = 417 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 150/420 (35%), Positives = 233/420 (55%), Gaps = 15/420 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + + I ++L E G+V T +Q+ + L D++ AQTG+GKT AFG+ L S + Sbjct: 5 FSQLDERIQKSLEEMGFVEPTPIQKEAIPLALEGHDLVGQAQTGTGKTAAFGIPLVSGI- 63 Query: 64 AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 SP + A+ + PTRELA+QV EL + GV GGVS+ R+ L+ Sbjct: 64 ------SPRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAFPIYGGVSIERQINALK 117 Query: 123 NGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G H I+VGTPGR+ D I L + ++ VLDEAD+MLD+GF +DIE IL +PK+++ Sbjct: 118 RGRHQIIVGTPGRVKDLINRGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSKTPKEKQ 177 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSAT+ I L Y K + + + R +LV D+ A+ +L+ Sbjct: 178 TLLFSATMPYEIRRLIGRYLKPDYKNVKVGKQLITPKVKQRIILVRSEDKIKALEKLLKE 237 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 H + IVF T+ + K L A+ G+LSQ++R ++ R+G+ +V +AT Sbjct: 238 HEGVSTIVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVMRAFREGKVKVLVAT 297 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGID+ D+ LVI+ EL NPE+ +HR GRTGRAGR+G+++ ++ + +R RL+R Sbjct: 298 DVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGLAISLVAEPEKR---RLYR 354 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V V ++E + + D +S+ K++ LL++ PE++ A L Sbjct: 355 IKGLKGVRPERFRVNTVKELKKELLEADA---NSLPPYVKRLASELLSERSPEELVAVLL 411 >gi|227432573|ref|ZP_03914553.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351656|gb|EEJ41902.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 536 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 150/419 (35%), Positives = 229/419 (54%), Gaps = 12/419 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q I +A++ GYV T +QE + L +DV+ AQTG+GKT AFGL + + N Sbjct: 20 LSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPILEHIDLNN 79 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 AL ++PTRELA+Q EL+ L V V V GG + R+ ++L++ Sbjct: 80 KNIQ------ALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLKSHPQ 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGRL DHI K + I ++ +VLDEADEML++GF DDIE I+ +P +R+ L+FS Sbjct: 134 ILVGTPGRLLDHINRKTVKIDSVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQTLLFS 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ PAI + + + + I ++ +D V + +++ + + I K Sbjct: 194 ATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPKL 253 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF T+ V ++ L + L G+L+QQ RS L + + +ATDVAAR Sbjct: 254 AIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAAR 313 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREA 363 G+D+ D+ V + ++ +PE+ +HR GRTGRAG KG+SV FV P M R E L ++ Sbjct: 314 GLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAVEDLTKKR 373 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFL 421 + EPA +A + + +D+ + E + VD L AK+ E++AA L Sbjct: 374 MTPL--EPASLKDARIGKINNAAGEVAKLIDTTEVSEIQSQVDALTAKYTAEQLAAAVL 430 >gi|319896568|ref|YP_004134761.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031] gi|317432070|emb|CBY80420.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031] Length = 613 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 181/554 (32%), Positives = 277/554 (50%), Gaps = 27/554 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+ + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHEVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLSV 473 + + L P + P+ R D R R KG + + V Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNERGDRRENPRSAERRGERKGYVNPQPMDLYRIEV 483 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKLD 528 G E R ++ + IN + IG I++ D T VE+ G+ +LL+ +T L+ Sbjct: 484 GRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFGKTRVLN 542 Query: 529 KGIQLKYLGGEKPD 542 K +Q+ +LG K D Sbjct: 543 KQMQMSFLGAVKSD 556 >gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens] Length = 689 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 139/380 (36%), Positives = 226/380 (59%), Gaps = 12/380 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64 IPQ + +AL++RG L +Q A+L+P ++ +D++ A+TG+GKT+AFG+ + +L Sbjct: 54 IPQAVVDALAKRGIEKLFPIQRAVLDPAMQGRDLIGRAKTGTGKTLAFGIPIIHNILKAH 113 Query: 65 ENDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121 E DR S S AP AL +APTRELA QV RE ++ VC+ GGVS+ ++R L Sbjct: 114 EADRTSRRSGRAPRALVLAPTRELAKQVEREF---MESAPMLSTVCVYGGVSITTQQRQL 170 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 Q G + VGTPGR+ D I + L++ + +VLDEAD+ML +GF +D+E IL+ P++R+ Sbjct: 171 QRGVDVAVGTPGRIIDLIERRSLSLRDVSYLVLDEADQMLAVGFEEDVERILEQMPEERQ 230 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNIL 239 ++FSAT+ + L+K Y K + +++ ++ + I AV + + + + +++ Sbjct: 231 SMLFSATMPNWVKKLSKKYLKSPLTIDLVGDSNEKLAEGIKMLAVCIPPAAKRTVLNDLI 290 Query: 240 RYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 HG+ IVF T+ VL L AL G+++Q +R L R+GR V Sbjct: 291 SVHGSVGKTIVFTQTKRDADDVASVLGRTL-GCEALHGDITQSQRERTLASFREGRFSVL 349 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARG+D+P+++LV+H E+ ++PE +HRSGRTGRAG+ G ++ + +N +R Sbjct: 350 VATDVAARGLDIPNVDLVVHYEIPNDPETFVHRSGRTGRAGKDGTAILMFSENQKRTMRN 409 Query: 359 LFREANVSVVWEPAPSVEAI 378 + + P +E + Sbjct: 410 IEMDVGCKFTLMSPPQMEEV 429 >gi|260172628|ref|ZP_05759040.1| ATP-dependent RNA helicase [Bacteroides sp. D2] gi|315920918|ref|ZP_07917158.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694793|gb|EFS31628.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 644 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQVDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S + VV+DEADEML++GF + I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY ++A + I +N +++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + + P+ I ++ +++ D L+ ++ +E+++ D + Sbjct: 353 KMREIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFM 402 >gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense] gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense] Length = 564 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 249/458 (54%), Gaps = 19/458 (4%) Query: 3 IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FE +P + +AL E ++ T +Q ++ ++ DV+ AQTG+GKT AFG+ + Sbjct: 4 LFEQLPILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIPIIE 63 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119 + + S +L + PTREL +QV EL+ L + +AV GG S ++ R Sbjct: 64 KIDYK------LSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFR 117 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ H+++ TPGR+ DHI +++S LK + LDEADEML +GF++ +E IL P++ Sbjct: 118 ALESKPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEE 177 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ ++FSAT+ P+I +A YQK+ + + + + I+ LV D++ +V +L Sbjct: 178 RQTVLFSATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLL 237 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + I+F +T+ V T L + F A+ G+L Q +R + R G+ ++ I Sbjct: 238 DLKRDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILI 297 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356 ATDVAARGID+ D+++V++ +L E +HR GRTGRAG+KG++ F+ P+ ++ Sbjct: 298 ATDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKL 357 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDP 413 E +E V + PSVE I+++ + Q D + +S + M++ LL K Sbjct: 358 EYYLKE---KVKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQENANNPMIEKLLQKFSS 414 Query: 414 EKIAAGFL-RIHRAGLCAPEEITPVSLVSGRDRFRDDS 450 E+I G L I + I P + R+ F ++S Sbjct: 415 EQIIQGLLTNIQPKAKNYTDIIPPRMTFTPRETFNNNS 452 >gi|237720587|ref|ZP_04551068.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4] gi|293373374|ref|ZP_06619730.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC 3f] gi|229450338|gb|EEO56129.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4] gi|292631660|gb|EFF50282.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC 3f] Length = 644 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQVDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S + VV+DEADEML++GF + I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY ++A + I +N +++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + + P+ I ++ +++ D L+ ++ +E+++ D + Sbjct: 353 KMREIERIISKKFIVGKMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFM 402 >gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158] gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158] Length = 511 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 135/347 (38%), Positives = 204/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 44 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 103 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 163 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 164 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 224 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRERGLKQVI 283 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 284 VFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEVEALVATDVAARGL 343 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 344 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390 >gi|319775896|ref|YP_004138384.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047] gi|317450487|emb|CBY86704.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047] Length = 613 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 181/554 (32%), Positives = 277/554 (50%), Gaps = 27/554 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I +A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 12 LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YA+ G + GG + R L+ G Sbjct: 68 D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN+S L+ +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I N DID V ++ A++ L Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L ++ F+ AL+G+++QQ R L +R+ + +ATDVA Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++ R + + L ++ + D+ A D E IAA L Sbjct: 365 KGINEVELPNHEVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424 Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLSV 473 + + L P + P+ R D R R KG + + V Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNERGDRRENPRSAERRGERKGYVNPQPMDLYRIEV 483 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKLD 528 G E R ++ + IN + IG I++ D T VE+ G+ +LL+ +T L+ Sbjct: 484 GRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVEL-PQGMPKELLQQFGKTRVLN 542 Query: 529 KGIQLKYLGGEKPD 542 K +Q+ +LG K D Sbjct: 543 KQMQMSFLGAVKSD 556 >gi|299146922|ref|ZP_07039989.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_23] gi|298514807|gb|EFI38689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_23] Length = 644 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQVDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S + VV+DEADEML++GF + I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY ++A + I +N +++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + + P+ I ++ +++ D L+ ++ +E+++ D + Sbjct: 353 KMREIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFM 402 >gi|21226849|ref|NP_632771.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1] gi|20905151|gb|AAM30443.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1] Length = 587 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 143/415 (34%), Positives = 226/415 (54%), Gaps = 11/415 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +AL ++G+ T +QE ++ L+ E D++ AQTG+GKT AFG + + ++ Sbjct: 18 KALKKKGFEEPTPIQEKVIPLFLKGEADIIGQAQTGTGKTTAFGAPIIEKIPEKSGHVQ- 76 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV EL + + + GG S+ ++ R L++G IVVGT Sbjct: 77 -----AIILTPTRELAIQVSEELNSIKGDKKLYIVPIYGGQSMTQQLRVLKSGVDIVVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ K LN+ H+ VLDEADEML++GF DDI+ IL S+ +RML FSAT+ Sbjct: 132 PGRVIDHLERKSLNLEHIAYFVLDEADEMLNMGFIDDIKEILKSTGPNKRMLFFSATMPK 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI + K + ++ + I E + + V SD+ A+ I+ +VFC Sbjct: 192 AILGIVKKHMQNYEHITIEKEELTETLTEQIYFEVKESDKFEALCRIIDIEDEFYGLVFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ S+ + L++ + AL G+LSQQER L R + + ATDVAARGID+ Sbjct: 252 RTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAATDVAARGIDIM 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 DL VI+ L +PE+ +HR GRTGRAG++G ++ + RR + + + + Sbjct: 312 DLTHVINYALPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKSEMKKGH 371 Query: 372 APSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 P ++ + + R+ L++ + + GD +M LL ++ EKI A L+ Sbjct: 372 IPEIKDVIKAKRARVRTELEETIKTEEY-GDCLEMSQKLLEEYPAEKILAALLKF 425 >gi|311694220|gb|ADP97093.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15] Length = 457 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/378 (38%), Positives = 209/378 (55%), Gaps = 19/378 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ G+ T +Q + P L KD++ A+TGSGKT AFG++L L N R A Sbjct: 17 LNQLGFAQPTEIQAKAIAPGLAGKDIIAMAKTGSGKTAAFGISLVERL---NPRLF---A 70 Query: 75 PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV + + E A+ + V GGV++ + L +GAHIVVGTPG Sbjct: 71 VQALVLCPTRELADQVAKAIRELARARDNIKVLTLCGGVAIGPQIGSLSHGAHIVVGTPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+R + L++ LK VVLDEAD MLD+GF++ +E IL +P R+ +MFSAT I Sbjct: 131 RIQDHLRKQTLSLVRLKTVVLDEADRMLDMGFQEAMEDILSQTPPSRQTMMFSATWPAPI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+K YQK V V A + + DI+ V+ + +AIV +L ++ IVFC+T Sbjct: 191 RELSKQYQKSPVDVR-AEDTGDNPDIEELFYEVSPQSKSDAIVALLSERQPESCIVFCTT 249 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L E F + L G+L Q++R + L + + +ATDVAARG+D+ L Sbjct: 250 KQQCDDMAAELGERGFSALPLHGDLEQRDRDSVLVRFGNQSCSILVATDVAARGLDIKSL 309 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 LVI+AE + +PE HR GRTGRAG +G +V + R+ E SV W Sbjct: 310 PLVINAEPARDPEVHTHRIGRTGRAGEQGHAVTFCTPAQGHKITRIESERGRSVTWG--- 366 Query: 374 SVEAIRERDAQRILQDPL 391 D +++L PL Sbjct: 367 --------DTEKLLATPL 376 >gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 544 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/518 (30%), Positives = 277/518 (53%), Gaps = 19/518 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ + G+ + + VQEA + L +DVL AQTG+GKT +FG+ + + + Sbjct: 7 NLSKEVLQAIDDMGFESPSEVQEATIPLILEGRDVLAQAQTGTGKTASFGIPMIEGIEDK 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + L + PTRELA QV EL+ L Y K +V + GG + ++ RDL+ Sbjct: 67 SHNLQ------GLVLVPTRELARQVSDELKKLAKYKKFISIVPIY-GGADMGKQLRDLKK 119 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA IVVGTPGR+ DH++ K + + LK + LDEADEM D+GFRDD++ I++ + R+ L Sbjct: 120 GADIVVGTPGRVMDHMKRKTIVLDDLKFLTLDEADEMFDMGFRDDMKTIIEKTNPDRQTL 179 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 FSAT I ++ YQ D +V I + I+ + + + + + ++ H Sbjct: 180 FFSATFDNDIKEFSRLYQVDPAKVIIEKKELTAEKIEQFYLELNRNMKTEILNRLILIHK 239 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K +I+FC+T+ V +A+ ++V +L G++ Q R N ++ R+G V IATDV Sbjct: 240 PKKSIIFCNTKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIATDV 299 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ D++LV + +L E +HR GRT RAG+KG S + + + + + A Sbjct: 300 AARGLDVSDIDLVFNYDLPQQAEYYVHRIGRTARAGKKGASFTFVTSRDYPKFKEIEKYA 359 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAK-HDPEKIAA 418 N + P+ + E+++ L D + + I+ +++ ++++ LLA+ H I+A Sbjct: 360 NTKMEKMKLPTKSDV-EKESLDNLFDKVNKNIIRAEDQENYTEVLNKLLAEGHSLYDISA 418 Query: 419 GFLRIHRAGL--CAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGSSWFSLSVGS 475 L++ + +++ V G + R+ DS K KG F ++ G Sbjct: 419 SLLKMVKESTNKTKIKDLDRVDYGKGFEMSRESDSSKRKSKDKGMKKIKGPKIF-INKGK 477 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + ++R ++ +L + + + IG I + P+ +FVE+ Sbjct: 478 RDGLDSRDIIKLLGKHTDLAPSDIGRINIMPNFSFVEI 515 >gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber DSM 1279] gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279] Length = 556 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 155/445 (34%), Positives = 244/445 (54%), Gaps = 30/445 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ +G+ T +Q A + L KDVL A+TG+GKT+AFG+ +A+ L A +R Sbjct: 12 VAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIANRLDAARER-- 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP AL + PTRELA+QV +ELEWL + + GG ++ L+ G +VV Sbjct: 70 -GRAPRALILTPTRELALQVAKELEWLAPH--LTITPIYGGTGYGKQAEALKRGTDVVVA 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR D++ + L++S ++ VLDEADEML +GF + +E +L+++P R+ L+FSAT+ Sbjct: 127 TPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQTLLFSATLP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNAIVNILRYHGAKNAI 248 L++ YQK A+ +N+ + I Y A+ + +R + + ++L + + I Sbjct: 187 TWARRLSERYQKAAIHINVIKDE----AISYEEVAIQAPIHNRLSVLSDLLFAYAPERTI 242 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF ST+A + L + G++ Q +R ++ R G V +ATDVAARG+ Sbjct: 243 VFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLVATDVAARGL 302 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA--NVS 366 D+P+++LV+H L E+ LHRSGRTGRAGR G V + +R E L RE N Sbjct: 303 DIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETLERELKRNFK 362 Query: 367 VVWEPAPS--VEAIRERDAQRILQDPLFLDSIQGDEK---KMVDVLLAKHDPEKIAAGFL 421 V P P + A A+RI + P + D+K + + L+A+ + + AG L Sbjct: 363 RVNPPTPEEVMAAKWAMLARRIAKQP------EADKKLWREQAERLIAEGGVDAV-AGML 415 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRF 446 + G AP TP SL++G + + Sbjct: 416 ALILGG--AP---TPKSLMTGEENW 435 >gi|310822103|ref|YP_003954461.1| RNA helicase dead [Stigmatella aurantiaca DW4/3-1] gi|309395175|gb|ADO72634.1| RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1] Length = 621 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 211/368 (57%), Gaps = 31/368 (8%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ EALS GY T +Q A L P L KD+L A TG+GKT AF L L Sbjct: 57 LPPLV-EALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLL------- 108 Query: 67 DRFSP-ASAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 R +P A AP AL + PTRELA+QV + K G+ V GG + ++ R L+ Sbjct: 109 QRITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLK 168 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGR DH++ K L + ++ VVLDEADEMLD+GF +D+E IL S+P+KR+ Sbjct: 169 RGVDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQT 228 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN---------RQHSDIDYRAVLVALSDRDN 233 +FSAT+ P I ++A+ + ++ VRV IA E RQ + I RA VA R Sbjct: 229 ALFSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLSR-- 286 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 +L AIVFC TR V T L H ++ AL G +SQ++R ++ ++ Sbjct: 287 ----VLDVEAPTAAIVFCRTRTEVDELTLSLNGHGWRAHALHGGMSQEQRDRVIKQLKSH 342 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 A + +ATDVAARG+D+ L V++ ++ + PE +HR GRTGRAGR+G+++ ++ + Sbjct: 343 SADLLVATDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLV----E 398 Query: 354 RRAERLFR 361 R RL R Sbjct: 399 PREHRLLR 406 >gi|160882942|ref|ZP_02063945.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483] gi|156111625|gb|EDO13370.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483] Length = 644 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + +N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S + VV+DEADEML++GF + I IL Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++KNY ++A + I +N +++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + + P+ I ++ +++ D L+ ++ +E+++ D + Sbjct: 353 KMRDIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFM 402 >gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense DSM 14796] gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense DSM 14796] Length = 531 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 156/510 (30%), Positives = 263/510 (51%), Gaps = 35/510 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E G+ + +Q+ + ++ DV+ AQTG+GKT AFG+ + ++ + Sbjct: 19 ALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIPIV-------EKTTKDR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P +L + PTRELA+QV E+ + G+ V GG S+ R+ + L+NGA +++GTPG Sbjct: 72 VPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKNGAQVIIGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RMLMFSATISPA 192 RL DHI+ L +S + +VLDEADEMLD+GF +DIE I+ S + + L+FSAT+ Sbjct: 132 RLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQTLLFSATMPDP 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L K Y K+ V+I+ E D D+ A+ IL I+FC Sbjct: 192 IMALTKKYMKNPKVVSISKEQLTVPLTD--QFYCEAKDKLEALCRILETEDMDKTIIFCR 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V L + L G+L+Q +R ++ R+ V +ATDVAARG+D+ D Sbjct: 250 TKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVATDVAARGLDISD 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369 + VI+ ++ +PE+ +HR GRTGRAG+ G+++ F+ P+ + R E++ R ++ Sbjct: 310 VSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLRLIEKVIR---TTIKR 366 Query: 370 EPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427 + PS+ + +++D + L + +V+ + + +PEKIAA +R+++ G Sbjct: 367 KEVPSISDLLEKQKDELKNLISKIIRQENISHYLSIVEEMTEEFEPEKIAAAAIRLYQEG 426 Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487 PEE + D FK G +G + +++G ++ ++ Sbjct: 427 --EPEE-----------KLEVDKEKFKKTGAK----EGMTRLFINIGKEKNISKDDIVNY 469 Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADG 517 +C + ++ I IR+ TF+EV + Sbjct: 470 ICEEGDMKKKDIKNIRILDKFTFLEVPEEA 499 >gi|307823522|ref|ZP_07653751.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] gi|307735507|gb|EFO06355.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] Length = 462 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 144/394 (36%), Positives = 219/394 (55%), Gaps = 14/394 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E + GY +LT +Q L L +DV+ A+TGSGKT AFG+ L S L + R Sbjct: 17 ENIESLGYTHLTPIQAESLPHILEGRDVIAQAKTGSGKTAAFGIGLLSKLDLNSFRVQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ + PTRELA QV +E+ L + + V+ +C GGV +R L++G H+VVG Sbjct: 75 ----AMVVCPTRELADQVCKEIRRLARFTQNIKVLTLC-GGVPFGPQRASLEHGVHVVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL +H+ + L +S+LK +VLDEAD MLD+GF + I ++ +P R+ L+FSAT + Sbjct: 130 TPGRLQEHLGKRSLRLSNLKVLVLDEADRMLDMGFEEAITDVISYAPTHRQTLLFSATYT 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +++ +Q V V+I + + SDI+ R V S R NA+ +L Y+ ++ +VF Sbjct: 190 DPIREISQKFQFKPVSVSIETSHHD-SDIEQRFYQVEKSKRTNALGYLLSYYRPESTVVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ L F V AL G+L Q++R L + V +ATDVAARG+D+ Sbjct: 249 CNTKRDCQDVASSLENSGFTVQALHGDLEQKDRDQVLVRFSNKSCSVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D++ VI+ +L +PE +HR GRTGRAG+KG+++ + + R + + N W+ Sbjct: 309 KDMQAVINYDLPWDPEIYVHRIGRTGRAGKKGLALSLCTEQELNRVKAIEEYQNTPAKWD 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 + E QR + P+ I G K V Sbjct: 369 EVAPFQMSHE---QR-FEPPMVTLWIDGGRKNKV 398 >gi|73667695|ref|YP_303710.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro] gi|72394857|gb|AAZ69130.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro] Length = 579 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 157/505 (31%), Positives = 260/505 (51%), Gaps = 29/505 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +AL ++G+ T +QE ++ L+ E D++ AQTG+GKT AFG + + ++ + Sbjct: 18 KALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPIIEKIPEKSGKVQ- 76 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV EL L + + GG S+ ++ R L++G IVVGT Sbjct: 77 -----AIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQFRMLKSGVDIVVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ K LN+ ++ VLDEADEML++GF DDI+ IL ++ +RML FSAT+ Sbjct: 132 PGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRMLFFSATMPK 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + K + K+ V I E+ + + V SD+ A+ I+ +VFC Sbjct: 192 PILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIIDIEDEFYGLVFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ S+ + L + + AL G+LSQ+ER L R + + +ATDVAARGID+ Sbjct: 252 RTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVATDVAARGIDIM 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 DL VI+ L +PE+ +HR GRTGRAG++G ++ + RR + + + ++ Sbjct: 312 DLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIKKTSKSAMKRGR 371 Query: 372 APSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 P ++ + + R+ L++ + + GD +M + L ++ EKI A L+ Sbjct: 372 IPEIKDVIKAKRARVKAELEETI-KNEEYGDCLEMSEKFLEEYPAEKILAALLK------ 424 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 S ++ F D+S ++ G S + KG + +++G L + Sbjct: 425 -----------YSFKEMF-DESMYTEISGSSYVDRKGKTRLFIAMGKADGMTPEKLCEFI 472 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513 +G++ I + P +FV V Sbjct: 473 QEETGVSDLKIRDAEIFPHFSFVTV 497 >gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio proteoclasticus B316] gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus B316] Length = 711 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 140/419 (33%), Positives = 236/419 (56%), Gaps = 18/419 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+SE G+ ++ +Q+A + ++ KD++ AQTG+GKT AFG+ L + PA+ Sbjct: 73 AVSEMGFEYMSPIQKAAIPVMIQGKDIIGQAQTGTGKTAAFGIPLLHQV-------DPAN 125 Query: 74 APL-ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L A+ + PTRELA+Q ++ ++ G+ V GG + R+ + L NG IVVGT Sbjct: 126 KHLQAVVLCPTRELAMQAADDIRDFAKYMFGIKVLAVYGGQDISRQIKALSNGVQIVVGT 185 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R + + +K +VLDEADEMLD+GFR+DIE IL P +R+ +FSAT+ Sbjct: 186 PGRVMDHMRRHTMKMKDVKVLVLDEADEMLDMGFREDIETILQGMPMERQTALFSATMPE 245 Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI + K YQK DA + + + + I+ V +++ +V ++ Y+ +++F Sbjct: 246 AILKITKTYQKSDAEYIKMTPKEITVAAIEQAYYRVPQKLKEDVLVRLMDYYNPARSLIF 305 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V + + L + L G+LSQ +R + + R+GR + IATDVAARGID+ Sbjct: 306 CNTKRMVDQLAESLKGKGYLADGLHGDLSQNQRDTVMNLFRNGRINILIATDVAARGIDV 365 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 +E V + ++ + E +HR GRTGRAGR GMS ++ + + + + + Sbjct: 366 SGVEAVFNYDIPEDIEYYVHRIGRTGRAGRSGMSFTLVGGREMYKLREIEKVCHTKIEER 425 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAK-----HDPEKIAAGFLRI 423 P + I +Q++ + +D I+ GD +++ + K + E++AAGF+++ Sbjct: 426 HVPKAKEITRVKSQKVFAE--VIDIIENGDISSVLEFVNQKVEEGEYTAEQLAAGFMKL 482 >gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia multivorans ATCC 17616] gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans ATCC 17616] Length = 509 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 44 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 103 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 163 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 164 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 224 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 283 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 284 VFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 343 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFR---E 362 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ E+L + E Sbjct: 344 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLE 403 Query: 363 ANVSVVWEPA 372 V+ +PA Sbjct: 404 VQTLVLDKPA 413 >gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp. lyrata] gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp. lyrata] Length = 615 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 216/372 (58%), Gaps = 7/372 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL RG L +Q+A+L P ++ +D++ A+TG+GKT+AFG+ + ++ N Sbjct: 129 PEIV-KALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPVIDKIIKFNA 187 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + P L +APTRELA QV E E+ + + GG + ++ R+L G + Sbjct: 188 KHGRGKNPQCLVLAPTRELARQV--EKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDV 245 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VGTPGR+ D ++ LN+S ++ VVLDEAD+ML +GF +D+E IL P+KR+ +MFSA Sbjct: 246 AVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPEKRQSMMFSA 305 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-A 244 T+ I +L K Y + + +++ ++ Q I ++ R + I ++ HG Sbjct: 306 TMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVNEHGKG 365 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVF T+ R LA+ F+ AL G++SQ +R L RDG + +ATDVA Sbjct: 366 GKCIVFTQTKRDADRLAFGLAKS-FKCEALHGDISQAQRERTLAGFRDGNFNILVATDVA 424 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+P+++LVIH EL +N E +HR+GRTGRAG+KG ++ + Q R + + +E Sbjct: 425 ARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQEQSRAVKMIEKEVG 484 Query: 365 VSVVWEPAPSVE 376 P+ +VE Sbjct: 485 SRFNELPSIAVE 496 >gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium ATCC 33035] gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium ATCC 33035] Length = 619 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 160/518 (30%), Positives = 270/518 (52%), Gaps = 19/518 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I EA+++ G+ + +QE + + +DV+ AQTG+GKT AF L + S + + Sbjct: 62 LPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDTK- 120 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 A P AL +APTRELA+QV + + + GV V GG + + L+ GA Sbjct: 121 -----ARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGA 175 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGR+ DH+ L++S L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F Sbjct: 176 QVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALF 235 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI L+K Y + V + SE R + +I R +L+ + +A IL Sbjct: 236 SATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFLLIPHRAKMDAFTRILEVINYD 295 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ + L + F A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 296 AIIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 355 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 356 RGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNA 415 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAG 419 + PSV+ + E+ ++ Q +S+ + L+ K+ + IAA Sbjct: 416 RLEEMDLPSVDEVNEKRKEKFAQS--ITNSMDNKQADFFRTLVRKYSEDNNAAMDDIAAA 473 Query: 420 FLRIHRAGLCAPEEITPV-SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS---LSVGS 475 + + G E P+ RDR D R FK GG R + F L VG Sbjct: 474 LAVMLQGGKNFLMEDKPLPKPKRDRDRRDDRKRDFKSGGKGRGPKRPDGDFETYRLDVGK 533 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +Q ++ + G++ + G I + T V++ Sbjct: 534 RQNVRPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDL 571 >gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp. YIT 12067] gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp. YIT 12067] Length = 529 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 169/513 (32%), Positives = 257/513 (50%), Gaps = 35/513 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL++ G+ + +Q A + L DV+ AQTG+GKT AFG+ L + + Sbjct: 17 IVTALTDMGFEEPSPIQAATIPLVLEGNDVIGQAQTGTGKTAAFGIPLVQAI-------T 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA+QV E+ + V GG + R+ R L+N IV+G Sbjct: 70 DFKHIQALIMTPTRELAIQVAEEVGKIGRTRRVRALPVYGGQPIERQIRALRNNVQIVIG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI + + H+K +VLDEADEMLD+GF DDIE I+ S P +R+ L+FSAT+ Sbjct: 130 TPGRLIDHINRGTIRLDHIKFLVLDEADEMLDMGFVDDIEEIMRSLPVERQTLLFSATMP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +L K Y K V I+ E I+ D+ + +L I+F Sbjct: 190 RPILSLTKKYMKAPKNVTISKEELTVPLIE--QYYFETKDKIEGLCRLLDAEIDGKLIIF 247 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V + L+ + L G+LSQ +R ++ R+G V IATDVAARGID+ Sbjct: 248 CRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLIATDVAARGIDV 307 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369 ++ VI+ ++ +PE+ +HR GRTGRAG G+++ F+ P+ R+ + + R + Sbjct: 308 DNITHVINFDIPQDPESYVHRIGRTGRAGNTGVAMTFITPREF-RQLKLIERTVKTKIQR 366 Query: 370 EPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 P+ + ER +I +Q L L++ D + + LL + E++AA L++ + Sbjct: 367 RQLPTAANVIERQRDQIISKMQTVLELNAYH-DYMPIAESLLDDYSAEEVAAAALKLMQE 425 Query: 427 G---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 G L AP+E D D R G R G +++G QK + Sbjct: 426 GIKALEAPQE----------DILSKDLR----NTGGR---PGMVRLFINIGRSQKIMVKD 468 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ + + I + IG I + TFVEV D Sbjct: 469 IVSTIAIEADIPARDIGLINIYDKFTFVEVPED 501 >gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1] gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1] Length = 495 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFR---E 362 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ E+L + E Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLE 381 Query: 363 ANVSVVWEPA 372 V+ +PA Sbjct: 382 MQTLVLDKPA 391 >gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa] gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa] Length = 551 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 135/374 (36%), Positives = 213/374 (56%), Gaps = 6/374 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q I AL+++G L +Q A+L P ++ KD+ A+TG+GKT+AFG+ + +L N Sbjct: 49 ISQEIVGALAKKGITKLFPIQRAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKILQFN 108 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + PL + +APTRELA QV E E+ A + + GG + ++ RDL+ G Sbjct: 109 AQHGRGRYPLGIVMAPTRELARQV--EKEFREAAPSLDITCLYGGTPISQQMRDLEYGVD 166 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ D ++ L +S ++ VVLDEAD+ML +GF DDIE IL S P+KR + FS Sbjct: 167 VVVGTPGRIIDLMKRGSLVLSEVQHVVLDEADQMLGVGFVDDIETILSSVPQKRHSMCFS 226 Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243 AT+ I L + Y KD + +++ S+ + I ++ L + + + ++ H Sbjct: 227 ATMPSWIRELVRKYLKDPLTIDLVGDSDKKLAEGITLYSIASDLYAKASILGPLITEHAK 286 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ R +A+ ++ AL G++SQ R L R+G + +ATDV Sbjct: 287 GGKCIVFTETKRDADRLAYAMAK-TYKCEALHGDISQSVRERTLSGFREGHFNILVATDV 345 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++L+IH L E +HRSGRTGRAG+KG ++ + Q+ R+ + R+ Sbjct: 346 AARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDESRQVRIIERDT 405 Query: 364 NVSVVWEPAPSVEA 377 + P +V+ Sbjct: 406 GCKFLELPKIAVDG 419 >gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix cholodnii SP-6] gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6] Length = 479 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/427 (35%), Positives = 230/427 (53%), Gaps = 36/427 (8%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F+++P + A+ + GY+ +T +Q + L +DV+ +AQTG+GKT AF L L Sbjct: 17 FDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQK 76 Query: 62 LL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118 +L EN SPA P+ AL +APTRELA QV ++ YA+ + C+ GG+ + + Sbjct: 77 MLRHENASASPARHPVRALVLAPTRELADQVANNVKT-YARHSQLRVTCVFGGIDMAPQT 135 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +L+ G +++ TPGRL DHI+ K ++ ++ VVLDEAD MLD+GF D++ IL PK Sbjct: 136 AELKRGVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 195 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ L+FSAT SP I LA++Y +D + V +A N ++++ R V D+ +++I Sbjct: 196 TRQTLLFSATFSPEIKKLAQSYLQDPLLVEVARPNATATNVEQRFYSVTDDDKRRTVLHI 255 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 LR AIVF +++ +R + + AL G+ SQ ER AL + G V Sbjct: 256 LRERSITQAIVFVNSKLGAARLARSFERDGLRTSALHGDKSQDERLKALDAFKRGEVDVL 315 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-- 356 +ATDVAARG+D+ DL V + ++ N E+ +HR GRTGRAG G++V ++ + R Sbjct: 316 VATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLVSD 375 Query: 357 -ERLFREA-----------------------NVSVVWEPAPSVEAIRERDAQRILQDPLF 392 E+L ++ +V+VV PAP R R DP F Sbjct: 376 IEQLIKKKIEIEAIELNDERPRRPPRREIVDDVAVVDAPAPRY----SRPPSRTSVDPFF 431 Query: 393 LDSIQGD 399 Q D Sbjct: 432 ERPYQAD 438 >gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] Length = 487 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFR---E 362 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ E+L + E Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLE 381 Query: 363 ANVSVVWEPA 372 V+ +PA Sbjct: 382 VQTLVLDKPA 391 >gi|239996759|ref|ZP_04717283.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126] Length = 596 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 169/526 (32%), Positives = 266/526 (50%), Gaps = 27/526 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ I +AL + GY + +Q + L D+L AQTG+GKT AF L + + + E Sbjct: 13 NLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDPE 72 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN 123 + P L +APTRELA+QV + +YA + V GG S + R L+ Sbjct: 73 ERK------PQLLVLAPTRELAIQVAEAFQ-VYASFSQKIKVLPVYGGQSYDNQIRQLKR 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGR+ DHI+ K L++S LK +VLDEADEML +GF DD+E IL +P++R+ Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + + Y KD V IAS+ S I R +A + A+ I+ Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRIMEVEV 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + L+ + V L+G++ Q R ++ ++ G+ + +ATDV Sbjct: 246 FDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 ARG+D+ + VI+ ++ + E+ +HR GRTGRAGR+G ++ I +R + + Sbjct: 306 VARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIEKTT 365 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHD----PEKIA 417 + P PS+ I E R Q ++ Q D E M V + K + PE + Sbjct: 366 KQPIEAMPIPSISEINETRLSRFKQS--VAEATQDDSIESLMPIVEMIKEENEASPEVLM 423 Query: 418 AGFLRIHRAG--LCAPEEITP-VSLVSGRD------RFRDD-SRAFKVGGGSRDNFKGSS 467 A L+I + L E P ++ RD R RD R +V G+R +G Sbjct: 424 AALLKIAQGDEPLILKESDRPDINSKPQRDSRERNSRDRDGRERKPRVPRGNRKPEEGMQ 483 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 F + VG A+ ++ + + IN + IGAI + + + V++ Sbjct: 484 RFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDL 529 >gi|329960668|ref|ZP_08299011.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057] gi|328532541|gb|EGF59335.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057] Length = 648 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 174/530 (32%), Positives = 269/530 (50%), Gaps = 33/530 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE + I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSAEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115 L + N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 61 LIQKINVNN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLRVLPVYGGSSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ G HI+V TPGRL D + K +++S ++ VV+DEADEML++GF D I IL Sbjct: 114 SQIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILAD 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P++R L+FSAT+SP I ++K Y +DA + I +N S++ + V D+ A+ Sbjct: 174 VPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFCVHAKDKYAAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 234 KRIVDYNPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNL 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + + Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-------- 407 + R + P+ + I E+ +++ + L+ ++ +E ++ D + Sbjct: 354 LREIERIIGKKFIAGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEIGDFMPDIYRKLD 410 Query: 408 -LAKHDPEK--IAAGFLRIHRAGLCAPE-EITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463 L+K D K ++ F R E EI S SG+D R + R G R Sbjct: 411 WLSKEDLIKRMVSHEFNRFLEYYRDREEIEIANGSERSGKDGVRRERR-----DGGRQAQ 465 Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 G + +++G L+ +L +++ R +G I + P +F EV Sbjct: 466 PGYTRLFINLGKMDNFFPNELIGLLNKNTR-GRVELGRIDLMPKFSFFEV 514 >gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom phytoplasma AYWB] Length = 547 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 159/527 (30%), Positives = 272/527 (51%), Gaps = 22/527 (4%) Query: 3 IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FE +P + +AL E +++ T +Q ++ ++ DV+ AQTG+GKT AFG+ + Sbjct: 4 LFEQLPILEQTKKALKELNFIDTTPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIPIIE 63 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119 + N + + L + PTREL +QV EL+ L + +AV GG S ++ R Sbjct: 64 KI---NPKIQKTQS---LILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFR 117 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ H+++ TPGR DH+ +++S LK + LDEADEML +GF++ +E IL P++ Sbjct: 118 SLEAKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEE 177 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ ++FSAT+ P I +A YQKD + + +N + I+ LV D+ +V +L Sbjct: 178 RQTVLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRLL 237 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + I+F +T+ V T L + F A+ G+L Q +R + R G+ ++ I Sbjct: 238 DLKKDYSTILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILI 297 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARG+D+ D+++VI+ +L E +HR GRTGRAG+KG++ +I + ++L Sbjct: 298 ATDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKL 357 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPE 414 + PSV++I+ ++A+ + + L+ I+ ++++ + LL E Sbjct: 358 EYYLKEKITLLDIPSVQSIKLQNAKDL--EKKILNIIEKNKEETTPNPLAQKLLENFSSE 415 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 +I G L+ EI P + + R RF +SR G K S++ Sbjct: 416 QIIQGLLKNFLPKERNYTEIIPPRINTNNSFTRSRFGFESRFGSYGSNDSYKRKNSNFIE 475 Query: 471 --LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 +++G K L+ +L I ++IG I+ T EV + Sbjct: 476 VVINLGKKDNINPPVLLKLLKDHFKIYGKNIGNIKHLTHETIFEVES 522 >gi|326693280|ref|ZP_08230285.1| ATP-dependent RNA helicase/autoaggregation-mediating protein [Leuconostoc argentinum KCTC 3773] Length = 518 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 152/426 (35%), Positives = 232/426 (54%), Gaps = 13/426 (3%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + Q I +A++ GYV T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + +N AL ++PTRELA+Q EL+ L V V V GG + R+ + Sbjct: 61 ENIDLDNKNIQ------ALIVSPTRELAIQTADELKKLGHDKHVDVQVVFGGADIRRQIQ 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L++ I+VGTPGRL DHI K + I +K +VLDEADEML++GF DDIE I+ ++P Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDQVKTLVLDEADEMLNMGFLDDIEAIIKNTPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + + + I ++ +D V +++ + + IL Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRARDNEKFDTMTRIL 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 AIVF T+ V + L + L G+L+QQ RS L + + + Sbjct: 235 DVQAPTLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLSQFKSHEINILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356 ATDVAARG+D+ D+ V + ++ +PE+ +HR GRTGRAG +G+SV FV P M R Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMDYLRAI 354 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEK 415 E L ++ + EPA EA + + ++++ D+ + V+ L A++ E+ Sbjct: 355 EDLTKKRMTPL--EPATLQEARIGKIKNAAGEVAKLVNTVDADDIQSEVEKLTAQYSSEQ 412 Query: 416 IAAGFL 421 +AA L Sbjct: 413 LAAALL 418 >gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13] Length = 555 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 168/569 (29%), Positives = 288/569 (50%), Gaps = 60/569 (10%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +T +QE + ++ D++ + TG+GKT AFG+ ++ E+ R + L Sbjct: 2 GFTEMTEIQEKSIPLMMQGIDLIGRSNTGTGKTAAFGIPAVESISQEDPR-----SVQVL 56 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA+Q EL+ L V + GG S+ R+ DL+ GA+IVVGTPGR+ D Sbjct: 57 ILCPTRELAMQACEELKKLSRFMPWVRPCAVYGGASMDRQIGDLKRGANIVVGTPGRVMD 116 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+ + L + +LK V+LDEADEML++GFR+DIE IL P++R+ ++FSAT+ P I + Sbjct: 117 HMNRRTLKLQNLKTVILDEADEMLNMGFREDIETILSGVPEERQTVLFSATMPPEIMAIT 176 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 K +QKD + IA+++R I+ A+ + +A+ +L + K+A+VFC+T+ +V Sbjct: 177 KQFQKDPTVIKIAAKHRTVDTIEQYYYETAMGRKTDALRLLLLAYEPKSAMVFCNTKRTV 236 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ L + Q L G++ Q +R+ + + GR V +ATDVAARGID+ ++LV Sbjct: 237 DELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLVATDVAARGIDVNGIDLVF 296 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVWEPAPS-- 374 + +L + E +HR GRTGRAG+ G ++ ++ Q A R + + ++ + P+ Sbjct: 297 NYDLPQDNEYYIHRIGRTGRAGKSGTALTLVSGRRQVFALRDIAKYTKAEIIQKALPTRA 356 Query: 375 ------VEAIRERDAQRILQDPL-----FLDSIQGD---EKKMVDVLLAKHDPEKIAAGF 420 + + + AQ + P L+ + + +++ VLL EK++A Sbjct: 357 DLAAKKTQQLHDAVAQACAEQPSSRAEELLNRLTEEGYTAQQIAQVLLE----EKLSASL 412 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 I PE P + R R KV +++G +Q+ Sbjct: 413 QSI-------PEFDAPQPIRREGKRGRSAVTTAKV--------------DINIGRQQRIA 451 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540 +++ L ++G++ + G I + T VEV +D + ++ K + G K Sbjct: 452 PNFILGALVDATGLSGKDFGKIDIFDQHTTVEVPEAEMDFVIDSLNAGK------INGHK 505 Query: 541 PDFRGYKS------SGFKSKNSQDGATKR 563 + Y+ S F+ K+ DG +R Sbjct: 506 VTVKRYEGKETGSRSDFRGKSRNDGFNRR 534 >gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC 19718] gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC 19718] Length = 498 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 135/343 (39%), Positives = 200/343 (58%), Gaps = 2/343 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69 I A+++ GYVN T +Q ++ L KDV+ SAQTG+GKT F L L L A N Sbjct: 16 ILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLLYRLQAYANTSV 75 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL +APTRELA+Q+ + + AV GG+++ + LQ G I+ Sbjct: 76 SPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQIAALQAGVEIL 135 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + K +N S + +VLDEAD MLD+GF DI+ ++ +R+ LMFSAT Sbjct: 136 VATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLSPQRQSLMFSAT 195 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + K VR+ A +N + I + V + +++++R K A+ Sbjct: 196 FSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALLLHLIRQQNLKQAL 255 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ S ++L+ H VA+ G+ +QQ+R+ AL + G ++ +ATDVAARGI Sbjct: 256 IFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDVQILVATDVAARGI 315 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 D+ L VI+ EL NPE+ +HR GRTGRAG KG ++ ++ ++ Sbjct: 316 DIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEH 358 >gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649] gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649] Length = 601 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 188/581 (32%), Positives = 294/581 (50%), Gaps = 56/581 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY + +Q A + L + V+ AQTG+GKT AF L + S L + Sbjct: 35 ALKDVGYETPSPIQAATIPALLAGRHVVGLAQTGTGKTAAFALPILSRLDLKQ------K 88 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL +APTRELA+QV E ++ GV V GG + + L+ G HIVVGTP Sbjct: 89 TPQALVLAPTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGVQLSALRRGVHIVVGTP 148 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++S L+ +VLDEADEML +GF +D+E IL +P ++ + +FSAT+ Sbjct: 149 GRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAEKHVALFSATMPSQ 208 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++K Y DA+ + + +I R + + + +A+ IL + IVF Sbjct: 209 IRRISKKYLTDALEITVERTTETAPNITQRYLFCSYPQKIDALTRILEVENFEGMIVFVR 268 Query: 253 TRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 T+ T++LAE L F A++G+++Q +R + ++ G+ + +ATDVAARG+ Sbjct: 269 TKNE----TEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDILVATDVAARGL 324 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367 D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ FV P+ ++ + +A + Sbjct: 325 DVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPR--EKYLLKAIEKATKTT 382 Query: 368 VWE-PAPSVEAIRERDAQRI--LQDPLFLDSIQGDEKKMVDVL---LAKHD-PEKIAAGF 420 + E PSVE I +A R+ D + D DV+ + HD PE A Sbjct: 383 LTEMQLPSVEDI---NATRLGRFDDRITTALASSDIDAFRDVIAHYVRNHDVPEADVAAA 439 Query: 421 LRIHRAG----LCAPEEITP------VSLVSGRD-----RFRDD---SRAFKVGGGSRDN 462 L I G L P+ + P GRD RDD SR K G G R Sbjct: 440 LAIVLQGDEPMLLGPDPVRPPRRERDSGAQGGRDFSDRGPRRDDRGGSRFDKGGSGERPA 499 Query: 463 FKGS----SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-- 516 +GS + + ++VG + K E R ++ L G+ RQ G I ++ D + VE+ A Sbjct: 500 RRGSNVPMATYKIAVGRRHKVEPRQIVGALANEGGLGRQDFGHIDIRADHSLVELPATLP 559 Query: 517 --GVDLLRRTVKLDKGIQLKYLG--GEKPDFRGYKSSGFKS 553 DLLR T + I+L G +PD + ++ G ++ Sbjct: 560 AGTWDLLRTTRISGQLIELTESSERGGRPDKKPHRKGGPRA 600 >gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase domain-containing protein [Delftia acidovorans SPH-1] gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1] Length = 504 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 210/370 (56%), Gaps = 2/370 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-A 64 + + + A+++ GY ++T +Q + L KDV+ +AQTG+GKT AF L L L+ Sbjct: 9 QLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRH 68 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 EN SPA P+ AL + PTRELA QV +++ T + V GG+ + + +L+ Sbjct: 69 ENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKPQTLELKK 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G ++V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK R L Sbjct: 129 GVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKTRTTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT SP I LA +Y +D V + +A N S ++ R V+ D+ A+ ++L+ Sbjct: 189 LFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYSVSDDDKRYALRSLLKQRD 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + A VF +++ +R T+ L + AL G+ SQ ER AL+ + G + + TDV Sbjct: 249 IRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKRGEVDLLVCTDV 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ D+ V + ++ N E+ +HR GRTGRAG G++V ++ + R + + Sbjct: 309 AARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHDARLVGEIEKLI 368 Query: 364 NVSVVWEPAP 373 + EP P Sbjct: 369 KKKINVEPCP 378 >gi|283798617|ref|ZP_06347770.1| ATP-dependent RNA helicase [Clostridium sp. M62/1] gi|291073603|gb|EFE10967.1| ATP-dependent RNA helicase [Clostridium sp. M62/1] gi|295115719|emb|CBL36566.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium SM4/1] Length = 553 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 164/570 (28%), Positives = 283/570 (49%), Gaps = 57/570 (10%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A+++ G+ + +Q + +L KD++ AQTG+GKT AFG+ L + + Sbjct: 10 NLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIPLLEKIDPK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 N + A+ + PTRELA+QV E+ L G+ V GG + ++ R L++G Sbjct: 70 NKKLQ------AVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKDG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +++GTPGR+ DH+R K + + VVLDEADEML++GF +D+E IL P++R+ +M Sbjct: 124 VQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQTVM 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ AI +AK +QKD V + ++ + V ++ + +L + Sbjct: 184 FSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLLDMYAP 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K ++VFC+T+ V L + L G+L Q +R + R GR + +ATDVA Sbjct: 244 KLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDILVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ D+E V + ++ + E +HR GRTGRAGR+G + ++ + + R Sbjct: 304 ARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCK 363 Query: 365 VSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIA 417 +V +P PS++ + E A +IL + + D+ D +++D++ K + +A Sbjct: 364 TKIVPQPIPSIDDVTEIKADKILCQAEEILQDN---DMDRLIDIIERKVLEEDYTTLDLA 420 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDR--FRDDSRAFK----VGGGSRDNFKGS----- 466 AG LR ++ G D +DSR + +G N+ Sbjct: 421 AGLLR----------------MIMGEDNEDIIEDSRPLRSLDDLGDWRDRNYGRGRGSRS 464 Query: 467 ------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 + +++G Q + ++ + SG+ + +G+I + TFVEV Sbjct: 465 GGRGNRSGGDDMARLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVP 524 Query: 515 ADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 + D++ + +K D I+ K + EK + R Sbjct: 525 REQADIVLQAMK-DARIKGKNIHIEKANRR 553 >gi|198274009|ref|ZP_03206541.1| hypothetical protein BACPLE_00145 [Bacteroides plebeius DSM 17135] gi|198273087|gb|EDY97356.1| hypothetical protein BACPLE_00145 [Bacteroides plebeius DSM 17135] Length = 629 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 173/533 (32%), Positives = 273/533 (51%), Gaps = 36/533 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + Q I +A+ E GY N VQE ++ P L DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSQEIRKAIEEMGYENPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + +N P AL + PTREL +Q+ +L ++ T + + GG S+ Sbjct: 60 PLIQKIDVKN------CVPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSID 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R ++ G HI+V TPGRL D + K + ++ VV+DEADEML++GF D I IL++ Sbjct: 114 SQIRSMKRGVHIIVATPGRLIDLMERKVARLETVRDVVMDEADEMLNMGFTDSINTILEN 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P R LMFSAT+SP I +AK Y DA + I ++N ++++ A +V D+ A+ Sbjct: 174 VPNDRNTLMFSATMSPEIARIAKTYLHDAKEITIGTKNEGSKNVNHVAYIVHAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 ++ ++ IVFC TR L + + +L GELSQ +R +Q R Sbjct: 234 KRVVDFYPQIYGIVFCRTRKETQEIADKLIQDGYSADSLHGELSQAQRDLVMQKFRQRHL 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNM 352 ++ +ATDVAARG+D+ L VI+ L + E+ HRSGRTGRAG+ G+S+ +I + Sbjct: 294 QLLVATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGK 353 Query: 353 QRRAERLFREA-NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL---- 407 R ER+ ++ VS + P+ + I E+ +++ D ++ ++ E+++ L Sbjct: 354 MREIERIIKKKFEVSEL----PTGKEICEQQLIKVIDD---IEKVKVSEEEIETFLPGIY 406 Query: 408 -----LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460 L+K D K ++ F R APE P + + + +SR R Sbjct: 407 RKLDWLSKEDLIKRVVSLEFNRFLDYYKNAPEIEQPKA--NDKKAETKESRKGDKEKVGR 464 Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 KG + L++G ++ ++ R+ R IG I + + +F EV Sbjct: 465 KAEKGYTRLFLNLGKTDGFYTNQIIDLVNRNLKKERIQIGRIDLMQNFSFFEV 517 >gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M] gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2] gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2] gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M] Length = 487 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFR---E 362 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ E+L + E Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLE 381 Query: 363 ANVSVVWEPA 372 V+ +PA Sbjct: 382 MQTLVLDKPA 391 >gi|332637958|ref|ZP_08416821.1| putative ATP-dependent RNA helicase [Weissella cibaria KACC 11862] Length = 524 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/426 (34%), Positives = 238/426 (55%), Gaps = 13/426 (3%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + Q + A+ + GYV T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSELGLSQDLLTAIEKHGYVEATPIQEQTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + ++++ AL ++PTRELA+Q EL L V V GG + R+ Sbjct: 61 NMIDTDSNQVQ------ALVVSPTRELAIQTQDELFKLGRDKRVKVQAVFGGADIRRQIN 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L +GAHIVVGTPGRL DHI +N+S++K +VLDEADEML++GF +DIE IL + P + Sbjct: 115 GLSHGAHIVVGTPGRLIDHINRGTINLSNVKTLVLDEADEMLNMGFLEDIESILKAVPDQ 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + + + IA++ ++ V V ++ + + +IL Sbjct: 175 RQTLLFSATMPPAIKRIGVQFMTEPEHIQIAAKELTTDLVEQYYVRVRDFEKFDTLTHIL 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 K AI+F T+ V T+ L F + G+L+QQ+RS L+ ++G ++ + Sbjct: 235 DVQQPKLAIMFGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRSQVLKQFKNGEIKILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRA 356 ATDVAARG+D+ ++ V + ++ + E+ +HR GRTGRAG G SV I + + Sbjct: 295 ATDVAARGLDVSGVDYVYNFDIPQDSESYVHRIGRTGRAGAHGTSVTFISNAEMDYLKDI 354 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKHDPEK 415 E+L ++ + + +P EA+ R + + + G + +++D L+ K+D + Sbjct: 355 EKLTKKRMLPL--KPPTREEALAGRMSVAADSVEAVIAATSGSVDSEVIDTLVEKYDAKT 412 Query: 416 IAAGFL 421 +A L Sbjct: 413 LATALL 418 >gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 634 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 143/388 (36%), Positives = 218/388 (56%), Gaps = 11/388 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 +L E GY N T +Q A ++P + KD++ AQTG+GKT AF L L + + + + Sbjct: 19 SLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNKIDMK------IN 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQV E YAK G V GG S+ ++ L+ G ++VGT Sbjct: 73 APQILVLAPTRELAVQVA-EAFGSYAKFMKGFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + +LKA+VLDEADEML +GF DDIE++L+ P ++ +FSAT+ Sbjct: 132 PGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEWVLEHKPADSQLALFSATMPE 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + + V ++IAS ID R V V+ ++ A+V +L + I+F Sbjct: 192 QIKRVAAKHLSNPVNISIASSQTTVESIDQRYVQVSQHNKLEALVRVLEVENTEGIIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A++ ++ G+ + IATDVAARG+D+ Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIATDVAARGLDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 312 RIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTIERATNSRISPMK 371 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGD 399 PS E++ ER R+ + ++I GD Sbjct: 372 VPSPESVAERRLSRLGEQ--IQETINGD 397 >gi|325970751|ref|YP_004246942.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy] gi|324025989|gb|ADY12748.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy] Length = 622 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 137/344 (39%), Positives = 200/344 (58%), Gaps = 10/344 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+ +G+ T +Q A + L+++ DV+ AQTG+GKT AFGL + + P+ Sbjct: 19 AIKAKGFEEPTKIQSACIPLLLKDQVDVIGQAQTGTGKTAAFGLPILEIV-------DPS 71 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + AL +APTRELAVQ E+ L + +A GG S+ + R L+ G H+VVGT Sbjct: 72 LYQVQALILAPTRELAVQNAEEINSLKGDRRLEIAAVYGGASMELQLRKLRRGVHVVVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L++ HLK VVLDEADEMLD+GF +DIE +L +P ++RML FSAT+ Sbjct: 132 PGRILDHLRRGSLHLEHLKFVVLDEADEMLDMGFIEDIEEVLKQTPAEKRMLCFSATMPQ 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA+ + +A V I + + D V V SD+ A+ I+ I+FC Sbjct: 192 PIQRLAERFMHNAQVVKIQQDTMTSNLTDQIYVEVKESDKLEALTRIIDMEENFYGIIFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + + L G+LSQ++R L MR+ + +ATDVAARGID+ Sbjct: 252 RTKVQCDEVGRKLMDRGYDAEPLHGDLSQKQRELILHKMRERSISIIVATDVAARGIDIS 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 DL VI+ L +P+ +HR GRTGRAG+ G+++ FV P+ +R Sbjct: 312 DLTHVINFSLPEDPDAYIHRVGRTGRAGKTGIAITFVAPREFKR 355 >gi|15228722|ref|NP_188870.1| PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding [Arabidopsis thaliana] gi|75335517|sp|Q9LUW6|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9 gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana] gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana] gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana] Length = 610 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 216/372 (58%), Gaps = 7/372 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL RG L +Q+A+L P + +D++ A+TG+GKT+AFG+ + ++ N Sbjct: 125 PEIV-KALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNA 183 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + P L +APTRELA QV E E+ + + GG + ++ R+L G + Sbjct: 184 KHGRGKNPQCLVLAPTRELARQV--EKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDV 241 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VGTPGR+ D ++ LN+S ++ VVLDEAD+ML +GF +D+E IL P KR+ +MFSA Sbjct: 242 AVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSA 301 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-A 244 T+ I +L K Y + + +++ ++ Q I ++ R + I +++ HG Sbjct: 302 TMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKG 361 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVF T+ R LA+ ++ AL G++SQ +R L RDG + +ATDVA Sbjct: 362 GKCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVA 420 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+P+++LVIH EL +N E +HR+GRTGRAG+KG ++ + Q+ R + + +E Sbjct: 421 ARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVG 480 Query: 365 VSVVWEPAPSVE 376 P+ +VE Sbjct: 481 SRFNELPSIAVE 492 >gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM 2228] Length = 529 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 169/515 (32%), Positives = 267/515 (51%), Gaps = 32/515 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ E G+ T +Q + L +D++ AQTG+GKT AFG+ L + +E Sbjct: 10 NVSDEILKAVEEMGFEETTPIQTNAIPAVLNGQDIVGQAQTGTGKTAAFGIPLLEEMDSE 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 N P A+ + PTRELA+QV EL+ L K + GG S+ R+ + L+ G Sbjct: 70 N------KNPQAIILCPTRELAIQVSEELKRLAKYKRRIYTLPVYGGQSIGRQIKALKKG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IV+GTPGR+ DHIR K L + ++ VLDEAD MLD+GF DDIE +L P R+ L Sbjct: 124 VQIVIGTPGRVMDHIRRKTLKLDNINYFVLDEADVMLDMGFIDDIETVLRDIPDDRQTLF 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSATI +I L+K YQK++ + +A EN ID + +D+ A+ I+ Sbjct: 184 FSATIPKSIKRLSKKYQKNSKFLRVAHENLTVPSIDQYYYEIRRNDKLKALTRIMDLSNP 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVFC+TR V L + A+ G L+Q +R ++ R G V +ATDVA Sbjct: 244 ELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMKKFRSGIIEVLVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREA 363 ARGID+ D+E V + +L + + +HR GRTGRAG+ G + FV+ +++ + + + + Sbjct: 304 ARGIDVDDVEAVFNYDLPQDTDYYVHRIGRTGRAGKSGEAHNFVVGKDIYKLRD-IQKYT 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLAKHDPE----KIAA 418 + PS + I+ ++ Q+ ++DS D K +D++ D + +IAA Sbjct: 363 KSKIKRAQIPSQDDIQAAKFEQFSQELSAYMDS--ADLGKYIDLIEELIDEQYSAIEIAA 420 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 ++ ++ E P + SG++ F G G +++G K + Sbjct: 421 ALMK--KSVDKKEEAQEPEN--SGQN--------FGDTGAE----PGMVRLFINIGKKDR 464 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 R ++ + +G+ IGAI + + TFVEV Sbjct: 465 VSPRHIVGAIAGETGMPGGLIGAIDIYDNFTFVEV 499 >gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa] gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa] Length = 556 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 134/375 (35%), Positives = 219/375 (58%), Gaps = 8/375 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I +L+++G L +Q+A+L P ++ KD+ A+TG+GKT+AFG+ + ++ N Sbjct: 74 ISKEIVNSLAKKGITKLFPIQKAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKIIEFN 133 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 + PLA+ +APTRELA QV +E + + +C+ GGV + + R+L+ G Sbjct: 134 KQHGKGRNPLAMVMAPTRELARQVQKEF---HDSAPSLDTICLYGGVPISSQMRELEYGV 190 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ D ++ LN+S +K VVLDEAD+ML +GF DDIE IL PKKR + F Sbjct: 191 DVVVGTPGRIIDLMKRGSLNLSEIKYVVLDEADQMLGVGFVDDIETILSRLPKKRHSMCF 250 Query: 186 SATISPAITTLAKNYQKDAVRVNIASE-NRQHSD-IDYRAVLVALSDRDNAIVNILRYHG 243 SAT+ I L + Y KD + +++ + +R+ +D I ++ + + + + ++ H Sbjct: 251 SATMPSWIKQLVRKYLKDPLTIDLVGDSDRKLADGITLYSIASDMYAKASILGPLITEHA 310 Query: 244 -AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVF T+ R +A++ + AL G++SQ R L R+G + +ATD Sbjct: 311 KGGKCIVFTETKRDADRLAYAMAKN-HKCEALHGDISQNVRERTLSGFREGHFNILVATD 369 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+P+++L+IH L E +HRSGRTGRAG+KG ++ + Q+ R+ + + R+ Sbjct: 370 VAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDDARQVKLIERD 429 Query: 363 ANVSVVWEPAPSVEA 377 P +V+ Sbjct: 430 TGCRFSELPKIAVDG 444 >gi|150401787|ref|YP_001325553.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150014490|gb|ABR56941.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus Nankai-3] Length = 529 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 208/372 (55%), Gaps = 13/372 (3%) Query: 13 EALSERGYVNLTSVQEA----ILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 EAL ++G+ + T +Q+ +L+ D DV+ AQTG+GKT AFGL + L + Sbjct: 17 EALEKKGFKHPTPIQKKAIPMLLDGDY---DVVGQAQTGTGKTAAFGLPIIEKLENTDKE 73 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A+ + PTRELA+QV EL L + + GG + + R L+ G ++V Sbjct: 74 VQ------AIILTPTRELALQVSDELNSLRGSKNLKIVAMYGGQPIQEQIRQLKKGVNVV 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH++ L + +K VLDEADEMLD+GF DDIE IL + ++ML+FSAT Sbjct: 128 VGTPGRIMDHLKRGTLRLHTIKYFVLDEADEMLDMGFIDDIEDILRYTNPDKKMLLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LAK Y +++ SEN ++ V SD+ A+ ++ + I Sbjct: 188 LPRRIMGLAKRYMGKYKVISVKSENLTTDMVEQVYYEVRSSDKFEALCRVIDINKEFYGI 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC TRA V+ L+ + L G+++Q +R L + R ++ +ATDVAARGI Sbjct: 248 VFCKTRAEVNDIANKLSAKGYFAEGLHGDIAQNQREKILNRFKAKRTKILVATDVAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ DL V++ ++ NPE +HR GRTGRAG++G ++ + + RR + + R A + Sbjct: 308 DVTDLTHVVNYDIPQNPEAYVHRIGRTGRAGKRGTAITFVQPDEFRRLKDIKRTAKTEIA 367 Query: 369 WEPAPSVEAIRE 380 + PS+E I+E Sbjct: 368 KKDVPSIEEIKE 379 >gi|52424550|ref|YP_087687.1| SrmB protein [Mannheimia succiniciproducens MBEL55E] gi|52306602|gb|AAU37102.1| SrmB protein [Mannheimia succiniciproducens MBEL55E] Length = 613 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 145/384 (37%), Positives = 217/384 (56%), Gaps = 23/384 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I A+S+ G+ + +Q+A + L +DVL AQTGSGKT AF L L + + E Sbjct: 13 LPEFILSAVSDMGFETPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLAQIDIEE 72 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124 P L +APTRELA+QV E L+ K GV +A GG + R L+ G Sbjct: 73 ------KHPQMLVMAPTRELAIQVAEACE-LFTKNAKGVHIATLYGGQRYDIQLRALRQG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN+S LK +VLDEADEML +GF DD+E ++ P + + + Sbjct: 126 AQVVVGTPGRILDHIRRGTLNLSELKFIVLDEADEMLRMGFIDDVETVMAELPAQHQTAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + D V I S R + DI V ++ A++ L Sbjct: 186 FSATMPEPIRRITKRFMTDPQEVKIQSTQRTNPDIAQSCWYVRGYRKNEALLRFLEVEDF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L +H F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 246 DGAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ------NMQRRAE 357 ARG+D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ FV P+ N++R + Sbjct: 306 ARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLSNIERLMK 365 Query: 358 RLFREANVSVVWEPAPSVEAIRER 381 + E +V P+ EA++ R Sbjct: 366 KPIEEVDV-------PNHEALQAR 382 >gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f. nagariensis] gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f. nagariensis] Length = 424 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 212/375 (56%), Gaps = 17/375 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71 +AL+ RG +L VQ + P + +DV+ A+TGSGKT+AF L + LL EN + P Sbjct: 2 DALAARGIYSLFPVQAQVFEPIMNGRDVVCRAKTGSGKTLAFALPVVENLLEENGKSRPR 61 Query: 72 -ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP L +APTRELA QV RE E + + V GGVS+ + R L+NG +VVG Sbjct: 62 KGRAPRCLVLAPTRELANQVSREFESVCPN--LKVDSFYGGVSISPQIRSLENGVDVVVG 119 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSAT 188 TPGR+ D + L + +++ VLDEAD+MLD+GF D+E IL + P K+R+ L+FSAT Sbjct: 120 TPGRIIDLLERGCLKLDNIRYAVLDEADQMLDMGFEQDMERILGAIPEGKERQTLLFSAT 179 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG-- 243 + + ++AK YQ + + +++ E D +LV D + +A+ +L +G Sbjct: 180 LPKWVKSVAKRYQNNPLTIDLVGEENTGKLADTIRLLVQQVDGAQKMSALQGLLAMYGNT 239 Query: 244 --AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 AI+F +T+A + E AL G++SQ +R AL + RDG+ +AT Sbjct: 240 AGGGKAIIFVNTKAKADEVNMAVNE-FASCDALHGDISQAQREKALALFRDGKYNCLVAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+D+P ++LV H +L + E LHRSGRTGRAG+ G +V + + R + R Sbjct: 299 DVAARGLDIPSVDLVAHFDLPQDNEAFLHRSGRTGRAGKTGTAVVLFTEREARSLALILR 358 Query: 362 E---ANVSVVWEPAP 373 N +V P P Sbjct: 359 ATKVTNAELVGAPDP 373 >gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT] gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT] Length = 528 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 160/518 (30%), Positives = 256/518 (49%), Gaps = 33/518 (6%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+P I A+++ G+ + +QE + L KD++ AQTG+GKT AFG+ T Sbjct: 6 FENLPISDEIKSAIADMGFEEPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRD 120 + N + + PTRELA+Q +E+ L K G+ V GG + R+ + Sbjct: 66 IDLNNRNLQ------IMVLCPTRELAIQATQEITKLGKYKKGLNVLAIYGGQPIDRQIKA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G IV+GTPGR+ DHI K L ++K VVLDEADEMLD+GFRDDIE I+ S P+ R Sbjct: 120 LKRGVQIVIGTPGRVIDHINRKTLKTDNIKMVVLDEADEMLDMGFRDDIETIIQSVPENR 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ AI L+K YQ A + + +I+ R + V + + + ++ Sbjct: 180 QTILFSATMPKAIVELSKKYQTKAEFIKVVHRQLTVPNIEQRYIEVKENFKIEVLSRLID 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 K +++FC+T+ V L + L G++ Q +R + R+G + +A Sbjct: 240 MRNPKLSVIFCNTKKRVDEVVSELQSRGYFAEGLHGDMKQPQRDRVMSKFRNGTIEILVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGID+ D+E V + +L + E +HR GRTGRAGR G++ + R+ + Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAMRKLRDIE 359 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAKHDPE----K 415 R + PS + E A L+ ++I+ G K +D + D + Sbjct: 360 RYTKTKIKRAEIPSANDVEEFKANTFLEK--VKNTIEDGHLGKYIDYIENLLDEDFATID 417 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 IA+ L++ +L + + + G+ G +++G Sbjct: 418 IASALLKM--------------ALGEEKKEEVIEIQEEIGETGAE---PGMVRLFINIGR 460 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 K +AR ++ + +GI + IG I + TFVEV Sbjct: 461 NHKIQARDVIGAIAGETGIPGKVIGKIDIYEKFTFVEV 498 >gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 599 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 168/534 (31%), Positives = 267/534 (50%), Gaps = 48/534 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY N T +Q + L +DVL AQTG+GKT AF L + S + E+ + Sbjct: 15 ALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPILSNIDLEH------A 68 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV + YA+ G V GG + R L+ G HIVVGT Sbjct: 69 EPQALVLAPTRELAIQVAEAFQR-YAEHLKGFHVVPIYGGQDYGIQLRMLRRGVHIVVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R LN++ LK +VLDEADEML +GF DD+E+ILD +PK R++ +FSAT+ P Sbjct: 128 PGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPKGRQVALFSATMPP 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ Y + V I ++ I R +V S + + + IL ++F Sbjct: 188 VIRRIAQKYLHNPAEVTIQTKTTTVDTIRQRYWIVGGSHKIDILTRILEVEPFDGMLIFV 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + AL+G++ Q +R + +++G + IATDVAARG+D+ Sbjct: 248 RTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNGALSIVIATDVAARGLDVE 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + VI+ ++ S+ E+ +HR GRTGRAGR G ++ + + + R + + Sbjct: 308 RISHVINYDIPSDTESYVHRIGRTGRAGRAGDAILFVSPREKNMLYSIERATHSRIELME 367 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAG 427 P+ E I + + Q D+I ++ K+++ +HD ++A A Sbjct: 368 LPTTEVINNKRIAKFNQR--ITDTIAAEDLGFFTKLIEQYCHEHD---VSAIEAAAALAS 422 Query: 428 LCAPEEITPVSLV--------------SGRDRFRDDSRAFKVG-------GGSRDNFKGS 466 + E TP+ L SGRDR D R+ G G + KG Sbjct: 423 MVQGE--TPLLLSNKPEKSRSYEEREGSGRDRGSDRERSTDRGRSSDRDRGPVKKRTKGE 480 Query: 467 SW-------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++ + L VGS+ +A ++ + G++ +S+G I + + VE+ Sbjct: 481 TYGDEGKERYRLEVGSEHGVKAGNILGAILNEVGLDPESVGHISINEGYSTVEL 534 >gi|225450401|ref|XP_002278318.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera] Length = 764 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 129/389 (33%), Positives = 225/389 (57%), Gaps = 12/389 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + E+L +RG +L +Q A+L P L +D++ A+TG+GKT+AFG+ + L ++ Sbjct: 123 LPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDD 182 Query: 67 DRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121 ++ + P L +APTRELA QV +E++ + VC+ GGVS ++ L Sbjct: 183 EKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYITQQNAL 239 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G +VVGTPGR+ D I+G L + ++ +VLDEAD+ML +GF +D+E IL+ P +R+ Sbjct: 240 SRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPSERQ 299 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNIL 239 ++FSAT+ + LA+ Y + + +++ ++ + I A+ + + + +++ Sbjct: 300 SMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTATSKRTILSDLI 359 Query: 240 R-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 Y IVF T+ + L + AL G++SQ +R L R G+ V Sbjct: 360 TVYAKGGKTIVFTQTKRDADEVSMALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVL 418 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARG+D+P+++L+IH EL ++PE +HRSGRTGRAG++G ++ + + +R + Sbjct: 419 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKS 478 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL 387 L R+ + P++E + E A++++ Sbjct: 479 LERDVGCKFEFISPPAIEEVLESSAEQVV 507 >gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3] gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3] Length = 609 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 162/540 (30%), Positives = 271/540 (50%), Gaps = 38/540 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +ALS+ GY +++Q + P L KD++ AQTG+GKT AF L + + Sbjct: 14 QLPAFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILA----- 68 Query: 66 NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQ 122 R P S P AL +APTRELA+QV + YA+ G V GG + R L+ Sbjct: 69 --RLDPKLSKPQALVLAPTRELAIQVAEAFQK-YARHSKGFKVLPIYGGSDYRTQLRQLE 125 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G H++VGTPGR+ DH+R LN+S L +VLDEADEML +GF DD+E+IL+ +P KR++ Sbjct: 126 RGVHVIVGTPGRVMDHMRRGSLNLSALTTLVLDEADEMLRMGFIDDVEWILEQTPPKRQI 185 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ AI +AK + + I + ++ I R ++ + +A+ IL Sbjct: 186 ALFSATMPDAIRRIAKQHLNKPEEITIKLKTVTNASIRQRVWMMGGMHKLDALTRILETE 245 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 I+F TR + L+ + AL+G+++Q +R ++ ++ G + IATD Sbjct: 246 DTDGVIIFVRTRIATQELADKLSARGYATAALNGDIAQNQREKTVENLKKGGLDILIATD 305 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ + VI+ ++ ++PE +HR GRTGRAGR G ++ +R + R Sbjct: 306 VAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTIERV 365 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KI 416 + P+ E + ++ A R +++ + L+ + E +I Sbjct: 366 TGQKIESMELPTSEQVSDKRASRF--KARITETLDTRDLGAARELVESYQQEFGVPIIEI 423 Query: 417 AAGFLRIHRA---GLCAPEEITP-------VSLVSGRDRFRDDSRA--------FKVGGG 458 AA + +++ + A E + P GRDR RD +R Sbjct: 424 AAALVVMNQGSAKAIPAAEPVKPSRERPARAERSPGRDRDRDQARGQDRERTPKRPKESA 483 Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 RD G + + VG + + ++ + + ++ + IG I+++ D +FV++ DG+ Sbjct: 484 PRDADVGMDRYRIEVGRQHGVKPGNIVGAIANEAEVDAEYIGRIQIEDDHSFVDLP-DGM 542 >gi|261492525|ref|ZP_05989078.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496800|ref|ZP_05993174.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307547|gb|EEY08876.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311684|gb|EEY12834.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 601 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 172/517 (33%), Positives = 275/517 (53%), Gaps = 19/517 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +A++E G+VN + +Q+ + L +DVL AQTGSGKT AF L L LA+ Sbjct: 13 LPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E +AK G+ V GG + R L+ G Sbjct: 69 D--PTQRHPQMLVMAPTRELAIQVADACEQ-FAKNMKGIRVVTVYGGQRYDIQLRALKQG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 + +VVGTPGR+ DHIR L++S LK +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 126 SQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPETHQTAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + + + KD V I + R DI+ LV +++A++ L Sbjct: 186 FSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFLEVEEF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++ + ++ AL+G+++QQ R L +R GR + +ATDVA Sbjct: 246 DAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LVI+ ++ E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 306 ARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIENLIK 365 Query: 362 EANVSVVWEPAPSV--EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + ++ V P + E RE+ RI + L ++ + + D+ A D E++AA Sbjct: 366 KP-INEVAIPNHEILMEKRREKFKARISKQ-LEHHDLEKYRELLEDLFTADQDHEELAAA 423 Query: 420 FLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-GSSWFSLSVGSK 476 + + + L P + + S R R R++ + G R+N + + +G + Sbjct: 424 MMMLLQEKQKLILPPDPVVRAARSERGRDRNERNDRRNGREHRENNGVAMDLYRIELGRE 483 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 E R ++ + I+ + IG I++ + +E+ Sbjct: 484 DGVEVRHIVGAIANEGDISSRYIGHIKLYDKYSTIEL 520 >gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 635 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 170/512 (33%), Positives = 262/512 (51%), Gaps = 39/512 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L + + ++ + Sbjct: 20 ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------T 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELAVQV YAK V GG S+ ++ L+ G ++VGT Sbjct: 73 TPQILVLAPTRELAVQVAEAFSS-YAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + LKA+VLDEADEML +GF DDIE+IL+ +P +R++ +FSAT+ Sbjct: 132 PGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATMPE 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + + V V I S I+ R V V+ ++ A+V +L + I+F Sbjct: 192 QIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGVIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G+ + IATDVAARG+D+ Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 312 RIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMK 371 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKH---DPEKIAAGFLRIHRA 426 PS E + ER R+ + ++I GD M + + L + D + +AA L+ Sbjct: 372 IPSPETVAERRLSRLGEQ--LAETINGDLDFMKEAVAQLCQQLEVDTDLLAAALLQ---- 425 Query: 427 GLCAPEEITPVSLVSGRDRFRDD--SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 ++ P+ L + ++R RD+ R+ + GS N +G G + + +R Sbjct: 426 ---QVQQERPLQLPAIQERVRDERNERSERSDRGSDRNDRG--------GERGERRSREP 474 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 PM S G S A++ PDL D Sbjct: 475 RPMPA-SLG----SAEALKDNPDLKMCRYVID 501 >gi|254361250|ref|ZP_04977393.1| superfamily II helicase [Mannheimia haemolytica PHL213] gi|110735365|gb|ABG89253.1| ATP-dependent RNA helicase [Mannheimia haemolytica] gi|153092746|gb|EDN73789.1| superfamily II helicase [Mannheimia haemolytica PHL213] Length = 602 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 172/517 (33%), Positives = 275/517 (53%), Gaps = 19/517 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +A++E G+VN + +Q+ + L +DVL AQTGSGKT AF L L LA+ Sbjct: 13 LPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E +AK G+ V GG + R L+ G Sbjct: 69 D--PTQRHPQMLVMAPTRELAIQVADACEQ-FAKNMKGIRVVTVYGGQRYDIQLRALKQG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 + +VVGTPGR+ DHIR L++S LK +VLDEADEML +GF DD+E ++ P+ + + Sbjct: 126 SQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPETHQTAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + + + KD V I + R DI+ LV +++A++ L Sbjct: 186 FSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFLEVEEF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++ + ++ AL+G+++QQ R L +R GR + +ATDVA Sbjct: 246 DAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LVI+ ++ E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 306 ARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIENLIK 365 Query: 362 EANVSVVWEPAPSV--EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + ++ V P + E RE+ RI + L ++ + + D+ A D E++AA Sbjct: 366 KP-INEVAIPNHEILMEKRREKFKARISKQ-LEHHDLEKYRELLEDLFTADQDHEELAAA 423 Query: 420 FLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-GSSWFSLSVGSK 476 + + + L P + + S R R R++ + G R+N + + +G + Sbjct: 424 MMMLLQEKQKLILPPDPVVRAARSERGRDRNERNDRRNGREHRENNGVAMDLYRIELGRE 483 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 E R ++ + I+ + IG I++ + +E+ Sbjct: 484 DGVEVRHIVGAIANEGDISSRYIGHIKLYDKYSTIEL 520 >gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021] gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021] Length = 561 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 172/523 (32%), Positives = 265/523 (50%), Gaps = 17/523 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ ALS GY T +Q + P L +D+L A TG+GKT AF L + L Sbjct: 19 PELL-HALSGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPV----LQRMT 73 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R P+AL + PTRELAVQV + G V GG + R+ R LQ G I Sbjct: 74 RDGGGGEPMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQPIGRQLRALQQGVDI 133 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGR DHI L + L+ VVLDEADEMLD+GF +DIE IL +P+ R+ ++FSA Sbjct: 134 VVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAILQETPENRQTVLFSA 193 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGA 244 T+ P I +A+ + D VR+ + E + + A +V + + A+ +L Sbjct: 194 TMPPRINGIARRHLNDPVRIEMGRETTAPGEAPLVRQTAYVVPRAHKPAALGRVLDVEAP 253 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AIVFC TR V + T+ L ++ AL G + Q++R + +R G A + +ATDVA Sbjct: 254 TAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRLRTGTADLLVATDVA 313 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ L V++ ++ S PE+ +HR GR GRAGR+G+++ + R + + R Sbjct: 314 ARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTK 373 Query: 365 VSVVWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + E P++ +R R + L + L D ++ + +V+ L + D ++A + Sbjct: 374 RRIPIEKVPTIADLRARRLELTRAALHESLLEDDLE-RFRVVVETLTDEFDIMEVALAAV 432 Query: 422 RI-HRAGLCA--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 ++ H A A +EI V+L + R+ A + R GS L VG+ + Sbjct: 433 KLAHEASGAADDEQEIPEVALRTEREERGRREPAGRQERRGRPAAGGSGMTRLFVGAGRS 492 Query: 479 AEARW--LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 + R L+ + S + + IGAI + + VEV D Sbjct: 493 SGIRPQDLVGAIAGESRLTGRDIGAIEIADRFSLVEVPDAAAD 535 >gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 599 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 214/375 (57%), Gaps = 9/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L + + + +R + Sbjct: 20 ALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNAI--DPNR----N 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELAVQV E Y+K G+ V GG S+H++ L+ G IVVGT Sbjct: 74 VPQILVLAPTRELAVQVA-EAFGSYSKFMKGLHVLPIYGGQSMHQQLNALRRGPQIVVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + L A+VLDEADEML +GF DDIE+IL+ +P++R++ +FSAT+ Sbjct: 133 PGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQLALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A Y + V ++IA+ + I+ R V V+ ++ A+V +L + I+F Sbjct: 193 QIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G+ + IATDVAARG+D+ Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + VI+ ++ + E +HR GRTGRAGR GM++ + R + R + Sbjct: 313 RIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPMN 372 Query: 372 APSVEAIRERDAQRI 386 PS E + ER R+ Sbjct: 373 VPSPETVAERRLSRL 387 >gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 502 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 136/343 (39%), Positives = 204/343 (59%), Gaps = 5/343 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-N 66 P+++ +AL+++GYV+ T +Q + L+ DV+ +AQTG+GKT F L + L+A N Sbjct: 32 PEIL-KALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQLLMAHAN 90 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 SPA P+ AL + PTRELA QV ++ T + V GG+ + + L+ G Sbjct: 91 SSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTAALRGGV 150 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL DH++ K +N+S + +V+DEAD MLD+GF D++ I++ PK+R+ LMF Sbjct: 151 EIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMF 210 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT SP I LA + KD V + +A N ++ V + +A+ I+R G K Sbjct: 211 SATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIIYKVEEEAKRDAVSFIIRERGLK 270 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF +T+ SR + L + A+ G+ SQ ER AL+ ++G V +ATDVAA Sbjct: 271 QVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGTIEVLVATDVAA 330 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 RG+D+ +L VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 331 RGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLF 373 >gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1] gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 616 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 151/419 (36%), Positives = 231/419 (55%), Gaps = 27/419 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + AL+ GY + +Q A + L +DVL +AQTG+GKT AF L + S L + Sbjct: 18 GLPEPLLAALTAVGYETPSPIQAATIPALLSGRDVLGTAQTGTGKTAAFALPILSHLDLK 77 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 R P AL +APTRELA+QV + + G V GG + L+ G Sbjct: 78 LAR------PQALVLAPTRELAIQVAEAFQRYAVQMPGFQVLPIYGGQGYGPQLHALRRG 131 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 H+VVGTPGR+ DH+ L++S L+ +VLDEADEML +GF DD+E +L P +R++ + Sbjct: 132 VHVVVGTPGRVIDHLERGTLDLSGLRNLVLDEADEMLRMGFIDDVEAVLKKVPDERQVAL 191 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ P I +A+ Y ++ V V IAS+ ++I R V+ + +A+ IL Sbjct: 192 FSATMPPPIRRIAQTYLREPVEVTIASKTTTSANIRQRYWFVSGMHKLDALTRILEAEPF 251 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVF T+A+ L A++G++ QQ+R +Q ++DGR V +ATDVA Sbjct: 252 DAMIVFARTKAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVLVATDVA 311 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFR 361 ARG+D+ + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R Sbjct: 312 ARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRAIERATR 371 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG-------DE-KKMVDVLLAKHD 412 + + P+V+A+ +R R F + I+G DE +++VD +HD Sbjct: 372 QPIEEMRL---PTVQAVNDRRVAR------FFERIEGTLEAGGLDEYRELVDRYATEHD 421 >gi|311087784|gb|ADP67863.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 601 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 176/550 (32%), Positives = 283/550 (51%), Gaps = 27/550 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + I ++L+E GYV + +Q + + L +DVL AQTGSGKT AF L L L Sbjct: 10 FLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLN 69 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 AP L +APTRELAVQV ++ G+ V GG + R L+ Sbjct: 70 IN------LKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR 123 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G IVVGTPGRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ PK+ + Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQT 183 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ AI ++K + ++ + I S DI ++ + + +A++ L Sbjct: 184 ALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIK-QSYWMVYGRKTDALIRFLEAE 242 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 I+F T+ + ++ L + + AL+G+++Q R L+ +++GR + IATD Sbjct: 243 DFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATD 302 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ + VI+ ++ + E+ +HR GRTGRAGR G ++ + +R + R Sbjct: 303 VAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 362 Query: 363 ANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPE--K 415 S+ P VE + +R A+++ Q L+S DE ++D L + D + Sbjct: 363 MKQSIPEVQLPKVELLCQRRLEQFAKKVQQQ---LESRDLDEYSALLDKLYSTDDLDIKT 419 Query: 416 IAAGFLRI---HRAGLCAPEEITPVS--LVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 +AA L++ R + P+ I S L+ DR R+D+R + RD K + + Sbjct: 420 LAAALLKMAQGERPLIIKPDVIKRQSRDLLFQDDRRREDNRNSRTRRDRRDINKDAELYR 479 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVK 526 + VG E R ++ + IN ++IG I++ + +E+ S D + RT Sbjct: 480 IEVGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYSTIELPKGMSKDLLQTFNRTRI 539 Query: 527 LDKGIQLKYL 536 L+K I +K L Sbjct: 540 LNKPINMKLL 549 >gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays] Length = 744 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 222/387 (57%), Gaps = 10/387 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L +RG +L +Q A+L P L +D++ A+TG+GKT+AFG+ + L+ ++ Sbjct: 95 LPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQLIEQD 154 Query: 67 D-RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 D R + P L +APTRELA QV +E++ K G V C+ GGVS + ++ L Sbjct: 155 DGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTV---CVYGGVSYNVQQNALSR 211 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGR+ D I G L + ++ +VLDEAD+ML +GF +D+E IL P R+ + Sbjct: 212 GVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGRQSM 271 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR- 240 +FSAT+ + L++ Y + + +++ + + I A+ + + + + +++ Sbjct: 272 LFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTATSKRTVLSDLITV 331 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y IVF T+ + L + AL G++SQ +R L R G+ V +A Sbjct: 332 YAKGGKTIVFTRTKKDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 390 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P+++L+IH EL ++PE +HRSGRTGRAG+ G ++ + + +R + L Sbjct: 391 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLE 450 Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL 387 R+ + + PS+E + E A+ ++ Sbjct: 451 RDVGCNFEFISPPSIEEVLESSAEHVI 477 >gi|293391610|ref|ZP_06635944.1| preprotein translocase subunit SecF [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952144|gb|EFE02263.1| preprotein translocase subunit SecF [Aggregatibacter actinomycetemcomitans D7S-1] Length = 595 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 181/586 (30%), Positives = 298/586 (50%), Gaps = 37/586 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I A+S+ G+ + +Q+ + L +DVL AQTGSGKT AF L + LA+ Sbjct: 8 LPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPI----LAKI 63 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YAK G+ + GG + R L+ G Sbjct: 64 D--PNEKHPQLLVMAPTRELAIQVADACEQFMKYAK-GINIVTLYGGQRYDIQLRALKQG 120 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN++ LKA+VLDEADEML +GF +D+E ++ P+ + + Sbjct: 121 AQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTAL 180 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + KD + I + + DI V +++A++ L Sbjct: 181 FSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDALLRFLEVEDF 240 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L +H F+ AL+G+++QQ R L +R G + +ATDVA Sbjct: 241 DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVATDVA 300 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 301 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNVEHLIK 360 Query: 362 EANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 + N+ V P V +A R + + + L ++ + + D+ A E IAA Sbjct: 361 K-NIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQEDIAAAM 419 Query: 421 LRIHRAG---LCAPEEITP--------VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469 + + + + P+ + + + R + G G+ + Sbjct: 420 MMLLQGKQKLILPPDPVVEKKARRERGERGDRRENPRSAERRGERKGYGTPQPM---DLY 476 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RT 524 + VG E R ++ + IN + IG I++ D + +E+ G+ +LL+ +T Sbjct: 477 RIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELP-QGMPKELLQQFGKT 535 Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS--QDGATKRFKRFK 568 L+K +++ ++G K + RG + G K + +D K ++FK Sbjct: 536 RVLNKQMRMSFIGEAKGE-RGGDNFGGKRRGGRFEDNGFKGERKFK 580 >gi|261868715|ref|YP_003256637.1| cold-shock deAd box protein a [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414047|gb|ACX83418.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 595 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 181/586 (30%), Positives = 298/586 (50%), Gaps = 37/586 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I A+S+ G+ + +Q+ + L +DVL AQTGSGKT AF L + LA+ Sbjct: 8 LPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPI----LAKI 63 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YAK G+ + GG + R L+ G Sbjct: 64 D--PNEKHPQLLVMAPTRELAIQVADACEQFMKYAK-GINIVTLYGGQRYDIQLRALKQG 120 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR LN++ LKA+VLDEADEML +GF +D+E ++ P+ + + Sbjct: 121 AQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTAL 180 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + KD + I + + DI V +++A++ L Sbjct: 181 FSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDALLRFLEVEDF 240 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L +H F+ AL+G+++QQ R L +R G + +ATDVA Sbjct: 241 DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVATDVA 300 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L + Sbjct: 301 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNVEHLIK 360 Query: 362 EANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 + N+ V P V +A R + + + L ++ + + D+ A E IAA Sbjct: 361 K-NIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRQLLEDMFTADQSQEDIAAAM 419 Query: 421 LRIHRAG---LCAPEEITP--------VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469 + + + + P+ + + + R + G G+ + Sbjct: 420 MMLLQGKQKLILPPDPVVEKKARRERGERGDRRENPRSAERRGERKGYGTPQPM---DLY 476 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RT 524 + VG E R ++ + IN + IG I++ D + +E+ G+ +LL+ +T Sbjct: 477 RIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELP-QGMPKELLQQFGKT 535 Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS--QDGATKRFKRFK 568 L+K +++ ++G K + RG + G K + +D K ++FK Sbjct: 536 RVLNKQMRMSFIGEAKGE-RGGDNFGGKRRGGRFEDNGFKGERKFK 580 >gi|284035184|ref|YP_003385114.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74] gi|283814477|gb|ADB36315.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74] Length = 643 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 219/372 (58%), Gaps = 8/372 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +A+++ G+++ + +Q + P L +DV+ AQTG+GKT AFG+ A L+ D Sbjct: 40 PELL-QAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIP-ALDLIDVQD 97 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAH 126 R + L + PTRELA+QV E++ L K G+ + GG S+ R+ R L++G H Sbjct: 98 R-----SVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKSGVH 152 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+GTPGR+ DH+ L ++++K ++LDEADEMLD+GFR+DIE IL+ P++R+ ++FS Sbjct: 153 IVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILFS 212 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+S I + + +QKD V V + + + +I+ V + + ++ + K Sbjct: 213 ATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLKL 272 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VFC+T+ V + L +Q L G+L Q +R+N + R G + +ATDVAAR Sbjct: 273 LLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAAR 332 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GID+ D++ VI+ ++ + E +HR GRTGRAG+ G + + ++ + R + V Sbjct: 333 GIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKVK 392 Query: 367 VVWEPAPSVEAI 378 V PS E I Sbjct: 393 VEKGVIPSFEDI 404 >gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 640 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 170/512 (33%), Positives = 262/512 (51%), Gaps = 39/512 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L + + ++ + Sbjct: 20 ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------T 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELAVQV YAK V GG S+ ++ L+ G ++VGT Sbjct: 73 TPQILVLAPTRELAVQVAEAFSS-YAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + LKA+VLDEADEML +GF DDIE+IL+ +P +R++ +FSAT+ Sbjct: 132 PGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATMPE 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + + V V I S I+ R V V+ ++ A+V +L + I+F Sbjct: 192 QIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGVIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G+ + IATDVAARG+D+ Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 312 RIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMK 371 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKH---DPEKIAAGFLRIHRA 426 PS E + ER R+ + ++I GD M + + L + D + +AA L+ Sbjct: 372 IPSPETVAERRLSRLGEQ--LAETINGDLDFMKEAVAQLCQQLEVDTDLLAAALLQ---- 425 Query: 427 GLCAPEEITPVSLVSGRDRFRDD--SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 ++ P+ L + ++R RD+ R+ + GS N +G G + + +R Sbjct: 426 ---QVQQERPLQLPAIQERVRDERNERSERSDRGSDRNDRG--------GERGERRSREP 474 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 PM S G S A++ PDL D Sbjct: 475 RPMPA-SLG----SAEALKDNPDLKMCRYVID 501 >gi|15616977|ref|NP_240190.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681730|ref|YP_002468116.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682285|ref|YP_002468669.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471430|ref|ZP_05635429.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386733|sp|P57453|DEAD_BUCAI RecName: Full=Cold-shock DEAD box protein A homolog; AltName: Full=ATP-dependent RNA helicase deaD homolog gi|25403610|pir||D84973 ATP-dependent RNA helicase deaD [imported] - Buchnera sp. (strain APS) gi|10039042|dbj|BAB13076.1| ATP-dependent RNA helicase deaD [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622018|gb|ACL30174.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624573|gb|ACL30728.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086109|gb|ADP66191.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086682|gb|ADP66763.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087268|gb|ADP67348.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 601 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 176/550 (32%), Positives = 283/550 (51%), Gaps = 27/550 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + I ++L+E GYV + +Q + + L +DVL AQTGSGKT AF L L L Sbjct: 10 FLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLN 69 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 AP L +APTRELAVQV ++ G+ V GG + R L+ Sbjct: 70 IN------LKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR 123 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G IVVGTPGRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ PK+ + Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQT 183 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ AI ++K + ++ + I S DI ++ + + +A++ L Sbjct: 184 ALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIK-QSYWMVYGRKTDALIRFLEAE 242 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 I+F T+ + ++ L + + AL+G+++Q R L+ +++GR + IATD Sbjct: 243 DFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATD 302 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ + VI+ ++ + E+ +HR GRTGRAGR G ++ + +R + R Sbjct: 303 VAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 362 Query: 363 ANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPE--K 415 S+ P VE + +R A+++ Q L+S DE ++D L + D + Sbjct: 363 MKQSIPEVQLPKVELLCQRRLEQFAKKVQQQ---LESRDLDEYSALLDKLYSTDDLDIKT 419 Query: 416 IAAGFLRI---HRAGLCAPEEITPVS--LVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 +AA L++ R + P+ I S L+ DR R+D+R + RD K + + Sbjct: 420 LAAALLKMAQGERPLIIKPDVIKRQSRDLLFQDDRRREDNRNSRTRRDRRDINKDAELYR 479 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVK 526 + VG E R ++ + IN ++IG I++ + +E+ S D + RT Sbjct: 480 IEVGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYSTIELPKGMSKDLLQTFNRTRI 539 Query: 527 LDKGIQLKYL 536 L+K I +K L Sbjct: 540 LNKPINMKLL 549 >gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810] gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810] Length = 669 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 165/525 (31%), Positives = 274/525 (52%), Gaps = 27/525 (5%) Query: 4 FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F++I P + A+ E G+ +++Q + P L +DV+ AQTG+GKT AFGL L + Sbjct: 86 FDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLAA 145 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRD 120 + AL +APTRELA+QV + + + G+ V GG + R Sbjct: 146 IDPSLREVQ------ALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERA 199 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L GA +VVGTPGR+ DH+R L + ++ VLDEADEML +GF +D+E IL SP R Sbjct: 200 LARGAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTR 259 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++ +FSAT+ AI +A+ + +D VRV+++ ++ + +V R A+ +L Sbjct: 260 QVALFSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVLA 319 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+ AIVF TRA+ L ++SG++ Q+ER ++ +RDG +V +A Sbjct: 320 TSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVA 379 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359 TDVAARG+D+ + LV++ ++ E+ +HR GRTGRAGR G ++ F+ P +RRA + Sbjct: 380 TDVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPH--ERRALKN 437 Query: 360 FREANVSVVWE---PAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKH--DP 413 A + E P+P + + R A ++ Q P ++ + + ++++ +A+H DP Sbjct: 438 IERATKQTLAEAVIPSPR-DVSKHRLAAQLTQVPARVERGRLELYRELIGQFVAEHDIDP 496 Query: 414 EKIAA--GFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468 ++AA G + + G EE T L R D R + + +G + Sbjct: 497 LELAAALGAMSVGDEGPGTATEEEEFTGAKLGEDRSPRGDRDRGPREAAATE---RGYTS 553 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + VG A ++ + G++ + IG I++ P V++ Sbjct: 554 YKVGVGHTHGARPPGIVGAITGEGGLHGKDIGKIQIFPHFALVQI 598 >gi|317474632|ref|ZP_07933906.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] gi|316909313|gb|EFV30993.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] Length = 644 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 147/413 (35%), Positives = 226/413 (54%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLIQQINVNN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLRVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S ++ VV+DEADEML++GF D I IL Sbjct: 113 ESQIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP IT ++K Y +A + I +N S++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEITRISKKYLHNAKEITIGRKNESTSNVKHVVFTVHAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + P+ + I E+ +++ + L+ ++ +E ++ D + Sbjct: 353 KMREIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEICDFM 402 >gi|217077055|ref|YP_002334771.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B] gi|217036908|gb|ACJ75430.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B] Length = 516 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 167/512 (32%), Positives = 273/512 (53%), Gaps = 34/512 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLL 63 N+ + A++E+G+ N T VQE ++ P L +EK+++V A+TG+GKT AFG+ L L Sbjct: 7 NLSEKTLRAINEKGFENPTPVQEKVI-PTLLKKEKNLIVQAKTGTGKTAAFGIPLIE--L 63 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 EN + A + + PTRELA+QV E+ L K ++ + GG S+ R+ L+ Sbjct: 64 LENKGYVQA-----IILTPTRELALQVSEEINSLKRKKLKILPIY-GGQSIQRQIDHLRK 117 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGR+ DH+ +++S + +LDEADEMLD+GF DD+E IL S+ + L Sbjct: 118 GVDIVVGTPGRILDHLERGTIDLSKVDYFILDEADEMLDMGFIDDVEKILKSTSDDKFFL 177 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSATI I LAK Y K+ + I + + + + + SD+ A+ I+ Sbjct: 178 MFSATIPKRIIDLAKKYIKNYEVIKIQDKQLTTNLTEQIYIELRESDKFEALCRIIDMEE 237 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +VFC T+ V + L E + AL G+ SQ +R L+ R+ + + +ATDV Sbjct: 238 EFYGMVFCRTKVEVDTVSSKLIERGYDAEALHGDFSQYQRERVLKKFREKKVNILVATDV 297 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFRE 362 AARGID+ L VI+ + NPE+ +HR GRTGRAG++G+++ FV P+ R+ R+ + Sbjct: 298 AARGIDITGLTHVINYSIPLNPEHYVHRIGRTGRAGKEGIAITFVTPREY-RQLFRIKKF 356 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKHDPEKIAAGFL 421 +N + PSV+ I + A++I + + +S + D ++ LL + E++ A L Sbjct: 357 SNAKIKEGKVPSVDQIIKTKAKKIKKQVVENNSKKHDIYYELAKELLNELPAEEVVATLL 416 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481 + L PE +S +S + + R F +++G + Sbjct: 417 SMGYKSL-NPESYNNISQISSKK--EEVVRLF-----------------IALGKQSGINK 456 Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + L+ + +++GI+ + I I V +F+ V Sbjct: 457 KQLIDYIVKNTGISSKVISDITVLDKFSFITV 488 >gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725] gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726] gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725] gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726] Length = 623 Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 164/526 (31%), Positives = 273/526 (51%), Gaps = 32/526 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I +A+++ G+ + +Q + + +DV+ AQTG+GKT AF L + S L + Sbjct: 62 LPDKILQAVAKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQLDPQ- 120 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124 A P AL +APTRELA+QV + +A+T G+ V GG + + L+ G Sbjct: 121 -----ARHPQALVLAPTRELALQVADAFQS-FAETLKGIEVLPIYGGQAYGIQLSGLRRG 174 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A ++VGTPGR+ DH+ L++S L+ +VLDEADEML++GF++D+E IL+S+P ++++ + Sbjct: 175 AQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPDRKQVAL 234 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ AI L+K Y + V + SE R + +I R +L+ + +A IL Sbjct: 235 FSATMPNAIRRLSKQYLHNPAEVTVKSERRTNDNIKQRFLLIPHRAKMDAFTRILEVITY 294 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVFC T+ + L + + A++G+++Q +R + ++DGR + +ATDVA Sbjct: 295 DAIIVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 354 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 355 ARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTN 414 Query: 365 VSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGD------EKKMVDVLLAKHDPE 414 + PSV+ + +E+ AQ I Q +D+ Q D K D +A D Sbjct: 415 ARLEEMDLPSVDEVNEKRKEKFAQAITQS---MDNKQADFFRNLVRKYSEDNNVAMDD-- 469 Query: 415 KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----S 467 IAA +H+ G L + + R R FK GG +R K Sbjct: 470 -IAAALAVMHQGGKNFLLEDKPLPKPKKDRRDRDDRKRDRDFKGGGKNRGGSKRPDGDFE 528 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + L VG +Q ++ + G++ + G I + T V++ Sbjct: 529 TYRLDVGKRQNVRPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDL 574 >gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3] gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3] Length = 462 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 140/347 (40%), Positives = 205/347 (59%), Gaps = 13/347 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL+ GY ++T VQ L L+ +DV+ A+TGSGKT AFG+ L T+ N RF Sbjct: 17 EALTALGYEHMTPVQAQSLPLVLKGRDVIARARTGSGKTAAFGIGLLQTI---NPRFFGV 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHIVVG 130 A L + PTRELA QV EL L ++ + V +C GG + L++GAHIVVG Sbjct: 74 QA---LVLCPTRELAEQVSGELRRLASRMANIKLVTLC-GGKPFGPQVGSLEHGAHIVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH++ K L++ LK +VLDEAD MLD+GF D +E I+ +PK R+ L+FSAT Sbjct: 130 TPGRILDHLQRKTLSLDGLKVLVLDEADRMLDMGFADSMESIISETPKSRQTLLFSATYP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 I ++ + Q+ V + E+ H+D I+ V +R+ ++ + ++ NA+ Sbjct: 190 ENIRKMSASIQRSPTMVTV-DEDVGHADEVIEQLFFEVQKHERNTTLLALFEHYRPANAV 248 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+T+ K+L E+ + A+ G+L Q+ER L + V +ATDVAARG+ Sbjct: 249 VFCNTKKQCDEVAKILQEYDIEARAIHGDLEQRERDQVLVQFSNNSCPVLVATDVAARGL 308 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 D+ L +VI+ EL +P+ +HR GRTGRAG G+++ VIP QR Sbjct: 309 DIKALAMVINYELPRDPDVYVHRIGRTGRAGETGLAMSIVIPSETQR 355 >gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552] gi|169293913|gb|EDS76046.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552] Length = 531 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 156/505 (30%), Positives = 259/505 (51%), Gaps = 24/505 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + +QE + L D + AQTG+GKT+AFG L S + +DRF Sbjct: 17 KAIKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAFGSVLLSKIKPIDDRF--- 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ ++PTRELA+Q+ E+ + G + GG + ++ R ++ G IVVGTP Sbjct: 74 --PQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSIKKGVDIVVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D +R K L ++K VVLDEADEML++GF +DIE IL+ R+ ++FSAT+ Sbjct: 132 GRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDARQTILFSATMPAG 191 Query: 193 ITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+NY D + V + S+ + + V DR + ++ K I+FC Sbjct: 192 IKKIAQNYMHDDFKHVAVLSKQTTATSVKQFYYEVKPKDRFETLCRLIDVANIKTGIIFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ SV T+ + + + V A+ G+L+Q R N L+ + G +ATDVAARGID+ Sbjct: 252 RTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFLVATDVAARGIDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 ++ VI+ EL + E+ +HR GRTGRA ++G++ +I +++ R ++ Sbjct: 312 NVTHVINYELPQDIESYVHRIGRTGRADKEGLAYSIISPKEVSFLKQIERVTKSTITKVN 371 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA---AGFLRIHRAGL 428 P+++ I E ++ D D I K L+ + DP ++ A L I Sbjct: 372 VPTLQEIFEARIGALISD--VEDVILAGNHKRFKQLVNEIDPTMLSDFTAALLYI----- 424 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 E++ G D RD + R+N K + L+VG+ + + ++ Sbjct: 425 SYQEQL-------GYDYQRDVIQEINSKKYDRNN-KNYTRLFLTVGTMDRVKVPQIIDFF 476 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513 ++GI + IG I ++ TFV++ Sbjct: 477 ITNAGIRKDDIGDIDLKRKFTFVDI 501 >gi|330817865|ref|YP_004361570.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3] gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3] Length = 485 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 132/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANSSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKQRQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y + + +A N +++ +A D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLSNPQTIEVARSNATATNVTQVVYEIAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRGEVEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|268679387|ref|YP_003303818.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946] gi|268617418|gb|ACZ11783.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 463 Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 135/341 (39%), Positives = 200/341 (58%), Gaps = 11/341 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L+ GY N+T +QEA L L +D++ A+TGSGKT+AFGL L L + R Sbjct: 19 ETLTRLGYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPLLLALHVKQMRIQ-- 76 Query: 73 SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 ++ + PTRELA QV EL L + +V +C GG + L++GAHIVVG Sbjct: 77 ----SVVLCPTRELAEQVSAELRKLASFTHNIKIVTLC-GGARFVPQCISLEHGAHIVVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ H++ K +N H+K +VLDEAD MLD+GF +DIE I+ PK+R+ L+FSAT Sbjct: 132 TPGRILQHLQEKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKERQTLLFSATFP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I + + QK+A+++++ E + I A+ V +++ + L K+ I+ Sbjct: 192 REIEQMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKEATLEAFLLNEMPKSVII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ +VS L E F + L G+L Q R L + +G A++ +ATD+AARG+D Sbjct: 252 FCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILVATDLAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 + D+E+VI+ EL E HR GRTGR G++G ++ FV P Sbjct: 312 IKDVEMVINYELPHTIEIYTHRIGRTGRMGKEGKAISFVTP 352 >gi|39939200|ref|NP_950966.1| superfamily II DNA/RNA helicase [Onion yellows phytoplasma OY-M] gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma OY-M] Length = 552 Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 160/533 (30%), Positives = 276/533 (51%), Gaps = 29/533 (5%) Query: 3 IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FE +P + +AL E +++ T +Q ++ ++ DV+ AQTG+GKT AFG+ + Sbjct: 4 LFEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIPII- 62 Query: 61 TLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRER 118 ++ P +L + PTREL +QV EL+ L + +AV GG S ++ Sbjct: 63 ------EKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQF 116 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L+ H+++ TPGR DH+ +++S LK + LDEADEML +GF++ +E IL P+ Sbjct: 117 RALEAKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPE 176 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT+ P I +A YQKD + + +N + I+ LV D+ +V + Sbjct: 177 ERQTVLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRL 236 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L +AI+F +T+ V T L + F A+ G+L Q +R + R G+ ++ Sbjct: 237 LDLKKDYSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKIL 296 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 IATDVAARG+D+ D+++VI+ +L E +HR GRTGRAG+KG++ +I + ++ Sbjct: 297 IATDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKK 356 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDP 413 L + PSV++I+ ++A+ + + L+ I+ + + ++ LL Sbjct: 357 LEYYLKEKITLLDIPSVQSIKLQNAKDL--EKKLLNIIEKNNEDATPNQLAQKLLETFSS 414 Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGG----GSRDNFKG 465 E+I G L+ +I P + + R RF +SR G G++ + Sbjct: 415 EQIIQGLLKKFLPKERNYTDILPPKMTTNNSFTRSRFGGESRFGSYGSNNSYGNKSYQRA 474 Query: 466 SSWF---SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 +S F +++G K L+ +L I ++IG I+ T EV++ Sbjct: 475 NSNFIEVVINLGKKDNINPPILLKLLKDHFQIYGKNIGNIKHLTHETIFEVAS 527 >gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC 51867] Length = 718 Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 136/391 (34%), Positives = 224/391 (57%), Gaps = 13/391 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I EA+ + G+ + +Q + L +DV+ AQTG+GKT AF L + + + N Sbjct: 117 LPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPIIARIDKSN 176 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 +P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 177 ------RSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRRGA 230 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DH++ L+ISHL +VLDEADEML++GF++D+E IL+ +P K+++ +F Sbjct: 231 HIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQVALF 290 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI L++ Y D V + +E R +++I R + VA ++ +A+ IL + Sbjct: 291 SATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEVTEFE 350 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G+++QQ+R + +RDGR + +ATDVAA Sbjct: 351 AMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAA 410 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ + E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 411 RGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 470 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396 ++ P+V+ + E ++ F DSI Sbjct: 471 TLEEMQLPTVDEVNESRKEK------FADSI 495 >gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991] gi|158432206|gb|EDP10495.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991] Length = 572 Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 164/522 (31%), Positives = 274/522 (52%), Gaps = 30/522 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I + I A+SE GY T +Q + + KDVL + TG+GKT AFG+ A ++ Sbjct: 8 HISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIP-AIEMVQP 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 D+++ A L I PTREL QV EL ++ K GV + GG + R+ + L+ G Sbjct: 67 QDKYANA-----LIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLKRG 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR--RM 182 IVVGTPGR+ DH+R + L +S ++ V+LDEADEML++GF++DIE IL P +R + Sbjct: 122 CGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSYQT 181 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT I +AK +Q D V V I S R ++ V + NA+ +L ++ Sbjct: 182 ILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANALRVLLNHY 241 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + ++F +T+ V L +H + AL G++ Q+ RS ++ R G + IATD Sbjct: 242 DPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPILIATD 301 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-RAERLFR 361 VAARGID+ D++LVI+ ++ + E +HR GRTGRAG+KG+++ +I QR + + R Sbjct: 302 VAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRSELKNIMR 361 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEK-KMVDVLLAKHDPEKIAAG 419 ++ P+ ++ + + ++ L D DE ++ + LLA+ Sbjct: 362 YTKTNIKHHALPTSAQMQAHNRKAYIEGVKLACDEGVTDESMEIANELLAE--------- 412 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 G+ I+ + ++ ++ D V + D F+ + S+G + Sbjct: 413 -------GIAVENIISALISMTYKNEIIDIEEEEHVKRYAAD-FEAVT-LKFSIGKQDGV 463 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 + ++ + GI+ ++IG I V+ + + V+V A VDL+ Sbjct: 464 KTGNIVAAISEECGISSKAIGRIDVRSNFSLVDVDAAKVDLV 505 >gi|241895833|ref|ZP_04783129.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella paramesenteroides ATCC 33313] gi|241870876|gb|EER74627.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella paramesenteroides ATCC 33313] Length = 512 Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 135/349 (38%), Positives = 201/349 (57%), Gaps = 7/349 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + Q + A+ + GYV T +QE + + KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSELGLTQDLLTAIEKHGYVEATPIQEKTIPLTMAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + EN AL ++PTRELA+Q EL L V V GG + R+ Sbjct: 61 EMIDNENKDVQ------ALVVSPTRELAIQTQDELFKLGRDKHVRVQAVFGGADIRRQIN 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L +GAHIVVGTPGRL DHIR +N+SH+K +VLDEADEML++GF +DIE IL + P + Sbjct: 115 GLNHGAHIVVGTPGRLIDHIRRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + + + IA++ +D V V ++ + + IL Sbjct: 175 RQTLLFSATMPPAIKRIGVQFMTNPEHIQIAAKELTTDLVDQYYVRVRDFEKFDVLTRIL 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + AI+F T+ V T+ L F+ + G+L+QQ+R+ L+ ++ ++ + Sbjct: 235 DVQQPELAIMFGRTKRRVDELTRGLTLRGFKAAGIHGDLTQQKRTQVLKQFKNREIKILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ATDVAARG+D+ + V + ++ + E+ +HR GRTGRAG G SV + Sbjct: 295 ATDVAARGLDISGVTYVYNFDIPQDSESYVHRIGRTGRAGAHGNSVTFV 343 >gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 718 Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 136/391 (34%), Positives = 224/391 (57%), Gaps = 13/391 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I EA+ + G+ + +Q + L +DV+ AQTG+GKT AF L + + + N Sbjct: 117 LPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPIIARIDKSN 176 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 +P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 177 ------RSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRRGA 230 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DH++ L+ISHL +VLDEADEML++GF++D+E IL+ +P K+++ +F Sbjct: 231 HIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQVALF 290 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI L++ Y D V + +E R +++I R + VA ++ +A+ IL + Sbjct: 291 SATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEVTEFE 350 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G+++QQ+R + +RDGR + +ATDVAA Sbjct: 351 AMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAA 410 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ + E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 411 RGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 470 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396 ++ P+V+ + E ++ F DSI Sbjct: 471 TLEEMQLPTVDEVNESRKEK------FADSI 495 >gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum SK141] gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum SK141] Length = 619 Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 136/413 (32%), Positives = 232/413 (56%), Gaps = 9/413 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ I EA+++ G+ + +QE + + +DV+ AQTG+GKT AF L + S + Sbjct: 62 LPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQI---- 117 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + A P AL +APTRELA+QV + + + GV V GG + + L+ GA Sbjct: 118 --DTKARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGA 175 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGR+ DH+ L++S L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F Sbjct: 176 QVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALF 235 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI L+K Y + V + SE R + +I R +L+ + +A IL Sbjct: 236 SATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFLLIPHRAKMDAFTRILEVINYD 295 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ + L + F A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 296 AIIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 355 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 356 RGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNA 415 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418 + PSV+ + E+ ++ Q +S+ + L+ K+ + AA Sbjct: 416 RLEEMDLPSVDEVNEKRKEKFAQS--ITNSMDNKQADFFRTLVRKYSEDNNAA 466 >gi|84490017|ref|YP_448249.1| helicase [Methanosphaera stadtmanae DSM 3091] gi|84373336|gb|ABC57606.1| predicted helicase [Methanosphaera stadtmanae DSM 3091] Length = 583 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 156/522 (29%), Positives = 261/522 (50%), Gaps = 33/522 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I +A+++ G+ + +Q + L KDV AQTG+GKT AFG+ L + +E Sbjct: 10 NISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLLENIDSE 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNG 124 ++ A+ + PTRELA+QV EL L + V GG + R+ + LQ G Sbjct: 70 DNNLQ------AIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I++GTPGR+ DHI L+++++K V+LDEADEMLD+GFR+DIE+IL+ P +R+ L+ Sbjct: 124 VQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LA+ YQ + V + D++ + V + + +L H Sbjct: 184 FSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHDF 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++VFC+T+ V + L + L G+L+Q +R + + G + +ATDVA Sbjct: 244 DLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ +E V + ++ ++ E +HR GRTGRAG+ G + + + + R A Sbjct: 304 ARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQRYAK 363 Query: 365 VSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + P P+ VE +++ + L++ + + I + + ++ ++ IAA L Sbjct: 364 TKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIEKLVEEDYNSIDIAATLL 423 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481 + G+ DD R + G + +G F +SVG KQ Sbjct: 424 K----GVI------------------DDKRYKEEEFGDTEAHEGFVRFFMSVGRKQNITI 461 Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLR 522 ++ + +G+ IG I + + +FVE+ A+ D R Sbjct: 462 SVILNSIYEKTGLTGHQIGNIDIFDNFSFVEIPKANASDFYR 503 >gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria subflava NJ9703] gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria subflava NJ9703] Length = 463 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 132/348 (37%), Positives = 205/348 (58%), Gaps = 2/348 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPA 72 AL+++GY N T +Q A + L D+L +AQTG+GKT AF L +L SPA Sbjct: 16 ALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATSSTSPA 75 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ G IVV T Sbjct: 76 MHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCEIVVAT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI I+ PK+R+ L+FSAT SP Sbjct: 136 VGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA+++ V +A++N +++++ + V + N + ++ IVFC Sbjct: 196 PIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLERLIVDLHMNQVIVFC 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ SV + T+ L ++ G+ SQQ R L ++G RV +ATDVAARG+D+ Sbjct: 256 KTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATDVAARGLDIA 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 +L VI+ EL + PE+ +HR GRTGRAG G+++ ++ + Q+ E + Sbjct: 316 ELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFESI 363 >gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu] Length = 487 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 134/347 (38%), Positives = 204/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYGKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRSRGLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ +Q ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368 >gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme DSM 15981] gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme DSM 15981] Length = 595 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 161/532 (30%), Positives = 273/532 (51%), Gaps = 44/532 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E G+ + +Q + + +D++ AQTG+GKT AFG+ L + P Sbjct: 45 AVTEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLLQ-------KVDPKV 97 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L A+ + PTRELA+QV E+ L G+ V GG + ++ R L++G +++GT Sbjct: 98 KKLQAIVLLPTRELAIQVAEEVRRLGKFMHGIKVLPIYGGQDIVKQIRSLKDGTQVIIGT 157 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R K + + ++ VVLDEADEML++GF +D+E IL P++R+ LMFSAT+ P Sbjct: 158 PGRVMDHMRRKTVKLDYVNTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSATMPP 217 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ +QK+ V V + + + V ++ + +L + K +IVFC Sbjct: 218 AIAEIARKFQKEPVTVRVVKKELTVPKVTQYYYEVKPKNKVEVMCRLLDLYAPKLSIVFC 277 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V + L + L G+L Q +R + R+GR + +ATDVAARGID+ Sbjct: 278 NTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILVATDVAARGIDVG 337 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 D+E V + ++ + E +HR GRTGRAGR+G + ++ + + R ++ + Sbjct: 338 DVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLRDIQRYCKTRIIPQA 397 Query: 372 APSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEK-----IAAGFLRIH 424 PS+ I E ++IL + + DS D KMV ++ K E+ +AA L+++ Sbjct: 398 IPSLNDITEIKVEKILDQVEEVMNDS---DLSKMVGIIEKKLMEEEYTSLDLAAALLKMN 454 Query: 425 RAGLCAPEEIT----PVSLVSGRDRF-RDDSRA-FKVGGGSRDNFKGSS----------- 467 E+I P + DR+ RD +R + GG+R KG++ Sbjct: 455 MGE--DSEDIIECSEPARSLDDLDRYGRDFNRGRGRTTGGNRSRRKGATDRAAIDYIVEG 512 Query: 468 ------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +++G Q+ ++ + SG+ + +G+I + TFV+V Sbjct: 513 DGDDMARLFINIGKAQRVTPGDILGAVAGESGMPGRLVGSIDMYDGYTFVDV 564 >gi|88857246|ref|ZP_01131889.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2] gi|88820443|gb|EAR30255.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2] Length = 624 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 202/367 (55%), Gaps = 17/367 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY+ T +Q + L KDVL AQTG+GKT AFGL L S L A+ Sbjct: 20 QAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLSRLDAD------L 73 Query: 73 SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L + PTRELA+QV L ++ G+ VA GG S + RDL G IVVGT Sbjct: 74 KQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLARGPQIVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI+ L + +LKA VLDEADEML++GF +DIE+IL+ P + +M FSAT+ Sbjct: 134 PGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMAFFSATMPA 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + D + V IA + I ++ V + + I IVF Sbjct: 194 PIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVVDYDAMIVFV 253 Query: 252 STRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 TR T VLAEHL F+ AL+G++ QQ+R ++ +++GR + IATDV ARG Sbjct: 254 RTRND----TLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATDVVARG 309 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANV 365 +D+P + VI+ +L + E+ +HR GRTGRAGR+G ++ R RL R E + Sbjct: 310 LDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRLERITEGKI 369 Query: 366 SVVWEPA 372 V P Sbjct: 370 EVFDMPT 376 >gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102] gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102] Length = 463 Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 204/346 (58%), Gaps = 2/346 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPA 72 AL+++GY N T +Q A + L D+L +AQTG+GKT AF L +L SPA Sbjct: 16 ALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATSSTSPA 75 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ G IVV T Sbjct: 76 MHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCEIVVAT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI I+ PK+R+ L+FSAT SP Sbjct: 136 VGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA+++ V +A++N +++++ + V + N + ++ IVFC Sbjct: 196 PIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLERLIVDLHMNQVIVFC 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ SV + T+ L ++ G+ SQQ R L ++G RV +ATDVAARG+D+ Sbjct: 256 KTKQSVDQVTRDLVRRHIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATDVAARGLDIA 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +L VI+ EL + PE+ +HR GRTGRAG G+++ ++ + Q+ E Sbjct: 316 ELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFE 361 >gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor] gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor] Length = 602 Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 216/359 (60%), Gaps = 11/359 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E L+ RG L +Q A+L P ++ KD++ A+TG+GKT+AFG+ + +L+ N+ Sbjct: 95 PRIV-EKLAARGITKLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSHNE 153 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 + PLA+ +APTRELA QV +E + ++ + +C+ GGV ++++ R L G Sbjct: 154 KNGNGRNPLAIVLAPTRELARQVEKE----FRESAPLDTLCVYGGVPINQQMRVLNYGVD 209 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVVGTPGR+ D +R LN+S ++ VVLDEAD+ML +GF +D+E I++ P+ R+ ++FS Sbjct: 210 IVVGTPGRIIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFS 269 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243 AT+ I ++ Y D V +++ ++ Q I ++ + + + +++ H Sbjct: 270 ATMPSWIRKISNKYLNDPVIIDLVGDSDQKLPEGISLYSIASDNFGKQSILGPLIKEHAN 329 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ R V+ + AL G++SQ +R L RDGR + +ATDV Sbjct: 330 GGKCIVFTQTKRDADRLAYVMGRS-YPCQALHGDISQNQRERTLSGFRDGRFNILVATDV 388 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 AARG+D+P+++LV+H E+ + E +HRSGRT RAG+KG ++ + Q RA R+ + Sbjct: 389 AARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYE-QTRAVRVIEQ 446 >gi|313114933|ref|ZP_07800430.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622755|gb|EFQ06213.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255] Length = 395 Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 205/353 (58%), Gaps = 9/353 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ G+ +T +QE + + DV+ A TG+GKT AFG+ +A +L EN Sbjct: 12 IHKAVERMGFAEMTEIQEKTIPVMMAGYDVIAKAPTGTGKTCAFGIPVAEHILPEN---- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P A+ +APTRELA Q+ +ELE L Y V VA GG ++ ++ + L G IVV Sbjct: 68 --KYPQAVIMAPTRELAQQIAQELEELTYFMPEVQVACVYGGANMEKQAKRLAEGCQIVV 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH + ++ISH+ +VLDEADEML++GF D+ I++ ++ + MFSATI Sbjct: 126 ATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKSLSMFSATI 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S + + YQ +A + + + I + + ++ + + I+ K +V Sbjct: 186 SREVMDIGWLYQHNAEEITVQPKEESQPKITQYMLETSGRNKLSDLAQIIIGENYKRVMV 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ + + LA F V L G+LSQ+ER+ +Q RDG+ + +ATDVAARGID Sbjct: 246 FCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGKLAILVATDVAARGID 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361 + D++ VI+ ++ S E+ HR GRTGRA ++G+S +F +P+ ++R + L R Sbjct: 306 VSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEE-KKRVQELLR 357 >gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662] gi|167652390|gb|EDR96519.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662] Length = 466 Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 149/423 (35%), Positives = 229/423 (54%), Gaps = 13/423 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I +A+ E G+ + +Q A + L +D++ AQTG+GKT AFG+ L + Sbjct: 19 NINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEKM--- 75 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 + P A+ + PTRELA+QV E+ L AK G V GG ++ + R L+ Sbjct: 76 ---DTKVKKPQAMILCPTRELAIQVADEIRKL-AKFMHGAKVLPIYGGQNITNQIRSLKT 131 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA+I+VGTPGR+ DH+R L + LK VVLDEADEML++GFR+DIE IL P++R+ L Sbjct: 132 GANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTL 191 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI + K YQKD+ + + + +I+ V + + +L H Sbjct: 192 LFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQKVEVLCRLLDMHS 251 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K +IVFC+T+ V T L + + G+L Q +R ++ R GR + +ATDV Sbjct: 252 PKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVATDV 311 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D++ V + +L + E +HR GRTGRAGR G + + + + R Sbjct: 312 AARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQRYC 371 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHD--PEKIAAG 419 + P PS+ ++ A++ L++ L +K M+D + + D +IAA Sbjct: 372 KTKIKARPIPSLNDVQATRAEKSLEEITGLIEENNLDKYVDMLDEFINETDFTALEIAAA 431 Query: 420 FLR 422 FL+ Sbjct: 432 FLK 434 >gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|304411613|ref|ZP_07393226.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307306611|ref|ZP_07586353.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|304350140|gb|EFM14545.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306910579|gb|EFN41008.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 640 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 141/388 (36%), Positives = 214/388 (55%), Gaps = 12/388 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L + + ++ + Sbjct: 20 ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------T 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELAVQV YAK V GG S+ ++ L+ G ++VGT Sbjct: 73 TPQILVLAPTRELAVQVAEAFSS-YAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + L+A+VLDEADEML +GF DDIE+IL+ +P +R++ +FSAT+ Sbjct: 132 PGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATMPE 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + ++ V V I S I+ R V V+ ++ A+V +L + I+F Sbjct: 192 QIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGVIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G+ + IATDVAARG+D+ Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 312 RIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMK 371 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGD 399 PS E + ER R+ + ++I GD Sbjct: 372 IPSPETVAERRLSRLGEQ--LAETINGD 397 >gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 640 Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 169/512 (33%), Positives = 262/512 (51%), Gaps = 39/512 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q A ++P + KD+L AQTG+GKT AF L L + + ++ + Sbjct: 20 ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------T 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELAVQV YAK V GG S+ ++ L+ G ++VGT Sbjct: 73 TPQILVLAPTRELAVQVAEAFSS-YAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + L+A+VLDEADEML +GF DDIE+IL+ +P +R++ +FSAT+ Sbjct: 132 PGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATMPE 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A + ++ V V I S I+ R V V+ ++ A+V +L + I+F Sbjct: 192 QIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGVIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR S + L + L G+++QQ R A+ ++ G+ + IATDVAARG+D+ Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E +HR GRTGRAGR GM++ + R + R N + Sbjct: 312 RIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMK 371 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKH---DPEKIAAGFLRIHRA 426 PS E + ER R+ + ++I GD M + + L + D + +AA L+ Sbjct: 372 IPSPETVAERRLSRLGEQ--LAETINGDLDFMKEAVAQLCQQLEVDTDLLAAALLQ---- 425 Query: 427 GLCAPEEITPVSLVSGRDRFRDD--SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 ++ P+ L + ++R RD+ R + GS N +G G + + +R Sbjct: 426 ---QVQQERPLQLPAIQERVRDERSERTERSDRGSDRNDRG--------GERGERRSREP 474 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 PM S G S A++ PDL D Sbjct: 475 RPMPA-SLG----SAEALKDNPDLKMCRYVID 501 >gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase domain protein [Thermincola sp. JR] gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR] Length = 529 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 169/520 (32%), Positives = 266/520 (51%), Gaps = 34/520 (6%) Query: 2 KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K FE++ + I +A+ E G+ T +Q + L DV+ AQTG+GKT AFG+ + Sbjct: 5 KTFESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPIL 64 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L N R+ A AL I PTRELA+QV E+ L V GG S+ R+ Sbjct: 65 EKL---NPRYR---AVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIG 118 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G +VVGTPGRL DHI L + HLK +VLDEADEMLD+GF DDIE I+ +P+ Sbjct: 119 ALKRGVQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPET 178 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I LA+ Y K+ V ++ + I+ V + ++ +L Sbjct: 179 RQTLLFSATMPHEIQQLARKYLKNPRLVAVSKDELTVPSIEQVYYEVREKTKLESLCRVL 238 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 AI+FC T+ V L +Q L G+L+Q +R+ ++ ++G+ + Sbjct: 239 ETIDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLV 298 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAER 358 ATDVAARG+D+ ++ VI+ ++ +PE +HR GRTGRAGR G ++ F++P+ + R R Sbjct: 299 ATDVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPE--EYRQLR 356 Query: 359 LFRE-ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP 413 L + + + PS+ I ER Q++ ++I G + + +V L A ++ Sbjct: 357 LIEKIIGARIARKNLPSIADIFER--QKVQMIDKVANTINGGQLDIYRDIVQELAADYNL 414 Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 IA+ L++ +EI D F G G +++ Sbjct: 415 IDIASAALKLALDLELPAKEI------------EVDEADFGETGAR----PGMVRLFMNI 458 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 G +++ ++ ++ + I +SIGAIR+ +FVEV Sbjct: 459 GRQEEMTPPEIIKLIAEEAAIPGKSIGAIRIFDRFSFVEV 498 >gi|282600167|ref|ZP_05973223.2| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM 4541] gi|282566628|gb|EFB72163.1| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM 4541] Length = 476 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 211/362 (58%), Gaps = 10/362 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E G++ +T +QEA L L +DV A+TGSGKT AFGL L + A+N F+ S Sbjct: 37 LNELGFLTMTPIQEAALPAILAGQDVRAQAKTGSGKTAAFGLGLLQHIDAKN--FNTQS- 93 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV EL L Y ++ +C GGV +R L + AH++V TP Sbjct: 94 ---LVLCPTRELADQVANELRRLARYIPNLKILTLC-GGVPFSVQRDSLAHAAHVIVATP 149 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ + +N+ HL+ +VLDEAD MLD+GF D+I+ I+ +P +R+ L+FSAT + Sbjct: 150 GRLLDHLHKETVNLDHLQTLVLDEADRMLDMGFSDEIDAIISFAPHQRQTLLFSATWPES 209 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +++ Q + + I S N + D++ + VA D+ + +L + ++FC+ Sbjct: 210 IADISQRIQNNPQTIEINSVN-ELPDVEQQFYEVARHDKIELLQKLLSRDQPASCVIFCN 268 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + V+ L G++ Q++R L +G +RV +ATDVA+RG+D+ Sbjct: 269 TKKDCQAVFDALNDSKQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVASRGLDIKA 328 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 LE+VI+ ELS +PE +HR GRT RAG+ G+++ + +RA L N+ + W P Sbjct: 329 LEMVINFELSWDPEVHVHRIGRTARAGQSGLAISLCSPEEAQRANALEEMLNMKLNWLPE 388 Query: 373 PS 374 P+ Sbjct: 389 PT 390 >gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20] gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20] Length = 522 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/352 (38%), Positives = 202/352 (57%), Gaps = 7/352 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + Q I +A++ GYV T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSELGLSQDILDAIATHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + N AL ++PTRELA+Q EL+ L V V V GG + R+ + Sbjct: 61 EHIDLSNKNIQ------ALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQ 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L++ I+VGTPGRL DHI K + I ++K +VLDEADEML++GF DDIE I+ ++P Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLDDIESIIKNTPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + + + I ++ +D V + +++ + + I Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 K AIVF T+ V ++ L ++ L G+L+QQ RS L + + + Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYRAAGLHGDLTQQMRSRVLAQFKSHEINILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ATDVAARG+D+ D+ V + ++ +PE+ +HR GRTGRAG KG+SV ++ N Sbjct: 295 ATDVAARGLDVKDVTHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPN 346 >gi|218131753|ref|ZP_03460557.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697] gi|217986056|gb|EEC52395.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697] Length = 644 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 173/538 (32%), Positives = 271/538 (50%), Gaps = 42/538 (7%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLIQQINVNN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLRVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S ++ VV+DEADEML++GF D I IL Sbjct: 113 ESQIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++K Y +A + I +N S++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKKYLHNAKEITIGRKNESTSNVKHVVFTVHAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------- 407 + + R + P+ + I E+ +++ + L+ ++ +E ++ D + Sbjct: 353 KMREIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEICDFMPDIYRKL 409 Query: 408 --LAKHDPEKIAAG-----FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460 L+K D K FL +R EEI + +G +R +++ + GG +R Sbjct: 410 DWLSKEDLIKRMVSHEFNRFLDYYR----NREEI---EIATGSER---NTKGSERGGSTR 459 Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 G +++G L+ +L S+ R +G I + +F EV V Sbjct: 460 QAAPGFKRLFINLGKMDNFFPNELISLL-NSNTRGRIELGRIDLMQKFSFFEVEEKEV 516 >gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group] gi|113550244|dbj|BAF13687.1| Os03g0827700 [Oryza sativa Japonica Group] Length = 723 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 221/387 (57%), Gaps = 10/387 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + L +RG +L +Q A+L P L +D++ A+TG+GKT+AFG+ + L+ E+ Sbjct: 76 LPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEED 135 Query: 67 DRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 D S P L +APTRELA QV +E++ K + VC+ GGVS + ++ L Sbjct: 136 DGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK---LSTVCVYGGVSYNVQQNALSR 192 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGR+ D I G L + +K +VLDEAD+ML +GF +D+E IL P +R+ + Sbjct: 193 GVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSM 252 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR- 240 +FSAT+ + L++ Y + + +++ + + I A+ + + + + +++ Sbjct: 253 LFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITV 312 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y IVF T+ + L + AL G++SQ +R L R G+ V +A Sbjct: 313 YAKGGKTIVFTKTKRDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 371 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P+++L+IH EL ++PE +HRSGRTGRAG+ G ++ + + +R L Sbjct: 372 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE 431 Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL 387 R+ + P++E + E A+ ++ Sbjct: 432 RDVGCRFDFISPPAIEDVLESSAEHVI 458 >gi|320540183|ref|ZP_08039838.1| putative ATP-dependent RNA helicase [Serratia symbiotica str. Tucson] gi|320029849|gb|EFW11873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str. Tucson] Length = 623 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 179/582 (30%), Positives = 284/582 (48%), Gaps = 48/582 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AF L L L A+ Sbjct: 21 ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLQAD------LK 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV + ++ V V GG + R L+ G IVVGTP Sbjct: 75 APQILVLAPTRELAVQVAEAMTDFSKHMHSVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + KD V+I S DI V ++ A+V L AI+F Sbjct: 195 IRRITRRFMKDPQEVHIQSSITTRPDISQSYWTVHGMRKNEALVRFLEAEDFDAAIIFVR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 255 TKNATLEVAETLERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 374 Query: 373 PSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLR 422 P+ E + ER A ++ Q ++ + M LLAK PE+ +AA L+ Sbjct: 375 PNAELLGERRLAKFAAKVQQ------QLESRDLDMYRALLAKLQPEEELDMETLAAALLK 428 Query: 423 I---HRAGLCAPEEITPVSLVSGRDRFRD-----DSRAFKVGGGSRD---------NFKG 465 + R + P+ PV R F D + R + SRD + Sbjct: 429 MAQGERPLILPPD---PVFKPRQRREFNDRDDLGNDRCRNIRSDSRDGDRPRRERRDVGE 485 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521 + + VG E R ++ + I+ + IG I++ + +E+ + ++ Sbjct: 486 MQLYRIEVGRDDGVEVRHIVGTIANEGDISSRYIGNIKLFASHSTIELPKGMPGEILNHF 545 Query: 522 RRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563 RT L+K + ++ LG +P+ R S F + ++GA +R Sbjct: 546 TRTRILNKPMNMQLLGDAQPNERSGHSRPFNGER-REGAPRR 586 >gi|320323321|gb|EFW79409.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. glycinea str. B076] gi|320327518|gb|EFW83530.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. glycinea str. race 4] gi|330876701|gb|EGH10850.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. glycinea str. race 4] Length = 559 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 172/555 (30%), Positives = 286/555 (51%), Gaps = 37/555 (6%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 11 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P+ P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 67 ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R + ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462 +AA LR G L A E P+ + + R R+ G R Sbjct: 419 VLAAALLRKATNGQALTLAAIERERPL-VPNNAPRGDRPERSGSSDRGDRPERERRAPVP 477 Query: 463 -FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 +G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 478 LAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL 537 Query: 522 RRTVKLDK--GIQLK 534 +K + G QLK Sbjct: 538 LTKLKDTRVAGKQLK 552 >gi|261364093|ref|ZP_05976976.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996] gi|288567659|gb|EFC89219.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996] Length = 471 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 136/354 (38%), Positives = 205/354 (57%), Gaps = 18/354 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+E+GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 16 ALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 72 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ Sbjct: 73 -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRA 127 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI I+ PK+R+ L Sbjct: 128 GCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 187 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT +P I LAK++ V +A++N ++++ + V + N + ++ Sbjct: 188 LFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNLLERLIVDLQ 247 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV + T+ L ++ G+ SQQ R L ++G RV +ATDV Sbjct: 248 MNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLRVLVATDV 307 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 AARG+D+ +L VI+ EL + PE+ +HR GRTGRAG G+++ ++ + Q+ E Sbjct: 308 AARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFE 361 >gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] Length = 489 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 204/346 (58%), Gaps = 4/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 ++ + + A++E GY ++T +Q + L KDV+ +AQTG+GKT AF L L LL Sbjct: 9 SLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKH 68 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122 E+ SPA P+ AL + PTRELA QV +++ LYAK T + V GG+ + + +L+ Sbjct: 69 ESSSTSPARHPVRALVLLPTRELADQVAQQIA-LYAKYTKLRSTVVFGGMDMKPQTLELK 127 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G ++V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+R Sbjct: 128 KGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTT 187 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT SP I LA +Y +D + + +A N S ++ D+ +AI +L+ Sbjct: 188 LLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQHFYSANDDDKRHAIHQVLKSR 247 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G K A +F +++ +R + L + AL G+ SQ ER AL + G + + TD Sbjct: 248 GIKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALDAFKQGAVDLLVCTD 307 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARG+D+ D+ V + ++ N E+ +HR GRTGRAG G++V ++ Sbjct: 308 VAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLV 353 >gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] Length = 571 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/347 (38%), Positives = 205/347 (59%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + + Sbjct: 96 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 155 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 156 SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEIL 215 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 216 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 275 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ +A+V +LR G K I Sbjct: 276 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQLLRDRGLKQVI 335 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 336 VFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 395 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 396 DIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 442 >gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115] gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115] Length = 602 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 138/374 (36%), Positives = 209/374 (55%), Gaps = 12/374 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ERG + +Q L L +D++ A+TG+GKT+AF L + L +R P Sbjct: 15 LAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPSRERARP--- 71 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA QV E ++K+GV GG S + L+ G +VVGTP Sbjct: 72 PRAIVVAPTRELAKQVAEE----FSKSGVGLTTVTVYGGASYAPQENALRRGVDVVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ L++S ++ VLDEADEML +GF D IE IL +P R+ ++FSAT++ Sbjct: 128 GRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQTMLFSATLNND 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L++NY ++ V V++ E + + +++ V V S R + ++L + + AIVF Sbjct: 188 INRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVGRS-RTRVLADLLTIYNPEKAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ L + AL G+L+Q +R AL R GR V +ATDVAARG+D+ Sbjct: 247 TRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P+++LV+ L +PE+ +HRSGRTGRAGR G ++ + R L R V + Sbjct: 307 PEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGLERITGVRFIER 366 Query: 371 PAPSVEAIRERDAQ 384 P P+ + ++ A+ Sbjct: 367 PLPTPKEVQAASAK 380 >gi|149191663|ref|ZP_01869906.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1] gi|148834504|gb|EDL51498.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1] Length = 460 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 217/398 (54%), Gaps = 13/398 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P + L GY ++T +Q L L KDV+ +TGSGKT AF L + S L + Sbjct: 10 NLPSELLGTLDSLGYASMTPIQAEALPKILAGKDVIGQGKTGSGKTAAFSLGVLSNLRVK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124 R +L + PTRELA QV +E+ L + V GG+ + + L++G Sbjct: 70 RFRVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHI+VGTPGR+ DH+ +N+S L +VLDEAD MLD+GF+D ++ I+D +PK+R+ L+ Sbjct: 124 AHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFKDALDAIIDQAPKERQTLL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT I T+A K V + S++ S + L +RDNA+ N+L H Sbjct: 184 FSATFPEQIQTIAARVMKQPEVVKVESKHDHSSIKQFFYQTNTLEERDNALENLLLTHQP 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++A+VFC+T+ V L F V+ + G+L Q++R AL + + +ATDVA Sbjct: 244 ESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRDRDQALVQFANKSVSILVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ + R R+ + Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGNKGLAFSFYSEKEFYRVARIDEYMD 363 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402 + + P+ + + + Q + IQG +K+ Sbjct: 364 MPIEPSELPA------KSSNQPFQAKMVTIQIQGGKKQ 395 >gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154] gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154] Length = 532 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 153/430 (35%), Positives = 234/430 (54%), Gaps = 21/430 (4%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + Q I +A++ GYV T +QE + L +DV+ AQTG+GKT AFGL + Sbjct: 1 MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + N AL ++PTRELA+Q EL+ L V V V GG + R+ + Sbjct: 61 EHIDLNNKNIQ------ALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGSDIRRQIQ 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L++ I+VGTPGRL DHI K + I ++K +VLDEADEML++GF +DIE I+ ++P Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLEDIESIIKNTPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + + + I ++ +D V + +++ + + I Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 K AIVF T+ V ++ L + L G+L+QQ RS L + + + Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356 ATDVAARG+D+ D+ V + ++ +PE+ +HR GRTGRAG KG+SV V P M R Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAV 354 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG-----DEKKMVDVLLAKH 411 E L ++ ++ EPA +++E +I +D I D + VD L +K+ Sbjct: 355 EDLTKKRMTAL--EPA----SLQEARVGKIKNAAGEVDQIVNAVDVKDIQSEVDKLTSKY 408 Query: 412 DPEKIAAGFL 421 E++AA L Sbjct: 409 SSEQLAAALL 418 >gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata] gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata] Length = 748 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 138/418 (33%), Positives = 232/418 (55%), Gaps = 15/418 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++PQ + E+L +RG +L +Q A+L P L+ +D++ A+TG+GKT+AFG+ + L E Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167 Query: 66 NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 +S P L +APTRELA QV +E++ + VC+ GGVS ++ Sbjct: 168 AGDYSAFRRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSA 224 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G +VVGTPGR+ D I G+ L + ++ +VLDEAD+ML +GF + +E IL++ P KR Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238 + ++FSAT+ + LA+ Y + + +++ + + I A+ + + + ++ Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344 Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + Y IVF T+ + L+ + AL G++SQ +R L R G+ V Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFTV 403 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVA+RG+D+P+++LVIH EL ++PE +HRSGRTGRAG++G ++ + + +R Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVR 463 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415 L R+ + P+V + E A +++ L+++ D K K EK Sbjct: 464 SLERDVGCHFEFISPPTVGDLLESSADQVVAT---LNAVHPDSIKFFSATAQKLYEEK 518 >gi|255066127|ref|ZP_05317982.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256] gi|255049672|gb|EET45136.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256] Length = 468 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 203/349 (58%), Gaps = 2/349 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69 I AL+E+GY N T +Q A + L D+L +AQTG+GKT AF L +L Sbjct: 13 IVSALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATSST 72 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ G IV Sbjct: 73 SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRAGCEIV 132 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI I+ PK R+ L+FSAT Sbjct: 133 VATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKPRQTLLFSAT 192 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 +P I LAK++ V +A++N ++++ + V + N + ++ I Sbjct: 193 FAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNLLERLIVDLQMNQVI 252 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ SV + T+ L ++ G+ SQQ R L ++G RV +ATDVAARG+ Sbjct: 253 VFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLRVLVATDVAARGL 312 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 D+ +L VI+ EL + PE+ +HR GRTGRAG G+++ ++ + Q+ E Sbjct: 313 DIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFE 361 >gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940] gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940] Length = 678 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 219/382 (57%), Gaps = 7/382 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + +A+++ G+ + +QE + + +DV+ AQTG+GKT AF L + S + E Sbjct: 61 LPEEVQQAVAKVGFTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQVDPE- 119 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 120 -----VRHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA 174 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL+ +P+++++ +F Sbjct: 175 QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVALF 234 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I L+K Y D V + SE R + +I R +L + +A IL Sbjct: 235 SATMPNSIRRLSKQYLNDPAEVTVKSERRTNDNITQRYLLTPHRQKMDAFTRILEVIEYD 294 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ L + + A++G+++QQ+R + ++DGR + +ATDVAA Sbjct: 295 AIIVFCRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAA 354 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 355 RGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 414 Query: 366 SVVWEPAPSVEAIRERDAQRIL 387 + PS +A+ E+ ++ L Sbjct: 415 RLEEMDLPSADAVNEKRKEKFL 436 >gi|143455890|sp|Q0DM51|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic; Flags: Precursor gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group] Length = 758 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 221/387 (57%), Gaps = 10/387 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + L +RG +L +Q A+L P L +D++ A+TG+GKT+AFG+ + L+ E+ Sbjct: 111 LPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEED 170 Query: 67 DRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 D S P L +APTRELA QV +E++ K + VC+ GGVS + ++ L Sbjct: 171 DGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK---LSTVCVYGGVSYNVQQNALSR 227 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGR+ D I G L + +K +VLDEAD+ML +GF +D+E IL P +R+ + Sbjct: 228 GVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSM 287 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR- 240 +FSAT+ + L++ Y + + +++ + + I A+ + + + + +++ Sbjct: 288 LFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITV 347 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y IVF T+ + L + AL G++SQ +R L R G+ V +A Sbjct: 348 YAKGGKTIVFTKTKRDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 406 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P+++L+IH EL ++PE +HRSGRTGRAG+ G ++ + + +R L Sbjct: 407 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE 466 Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL 387 R+ + P++E + E A+ ++ Sbjct: 467 RDVGCRFDFISPPAIEDVLESSAEHVI 493 >gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC 19624] gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC 19624] Length = 506 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/347 (38%), Positives = 204/347 (58%), Gaps = 3/347 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 A+++ GY +T +Q + L +DV+ +AQTG+GKT AF L L LL EN SPA Sbjct: 32 AVADMGYETMTPIQAQAIPVVLAGQDVMGAAQTGTGKTAAFSLPLLQRLLKHENASTSPA 91 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA QV ++++ T + AV GG+ + + +L+ G ++V T Sbjct: 92 RHPVRALVLLPTRELADQVAQQVKMYAKYTHLRSAVVFGGMDMKPQTLELKKGVEVLVAT 151 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+R L+FSAT SP Sbjct: 152 PGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKQRTTLLFSATFSP 211 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA +Y ++ + + +A N + ++ V D+ +A+ +LR K A VF Sbjct: 212 EIKRLASSYLQNPITIEVARSNATATTVEQHFYSVGEDDKRHALRQVLRDKNLKQAFVFV 271 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +++ +R + L + AL G+ SQ ER AL + G + + TDVAARG+D+ Sbjct: 272 NSKLGCARLARALERDGLKTAALHGDKSQDERLKALDAFKKGEVDLLVCTDVAARGLDIK 331 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357 D+ V + ++ N E+ +HR GRTGRAG G++V FV P++++ AE Sbjct: 332 DVPAVFNIDIPFNAEDYVHRIGRTGRAGALGVAVSFVSPRDVKSVAE 378 >gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13] gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13] Length = 469 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/366 (37%), Positives = 216/366 (59%), Gaps = 10/366 (2%) Query: 2 KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA- 57 K FE+ P ++ +AL + GYV+ T +Q + L KDV+ +AQTG+GKT + L Sbjct: 15 KKFEDFGLSPDIL-KALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPM 73 Query: 58 LASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 L S L + N SPA P+ AL + PTRELA QV +++ T V AV GGV + Sbjct: 74 LQSLLFSANTSMSPARHPVRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISS 133 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + L+ G I++ TPGRL DH++ K +N+SH + +VLDEAD MLD+GF D++ I++ Sbjct: 134 QTSILRAGVEILIATPGRLLDHVQQKNVNLSHTQILVLDEADRMLDMGFLPDLQRIVNLL 193 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 PK+R+ L+FSAT S I LA+++ KD V V +A +N ++ + S+++ A+ Sbjct: 194 PKQRQNLLFSATFSNDIKKLARSFMKDPVTVEVARQNATAENVKQTVYRIEESEKNAAVE 253 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 ++L+ + ++F +T+A SR + L + A+ G+ +Q ER L+ + G Sbjct: 254 HLLKDRNQEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSID 313 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 + +ATDVAARG+ + +L VI+ +L E+ +HR GRTGRAG KG ++ + + + Sbjct: 314 ILVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGSKGEAISLYSE----KD 369 Query: 357 ERLFRE 362 ERL +E Sbjct: 370 ERLLKE 375 >gi|70731602|ref|YP_261343.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5] gi|68345901|gb|AAY93507.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas fluorescens Pf-5] Length = 557 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 172/550 (31%), Positives = 286/550 (52%), Gaps = 29/550 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 11 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P+ P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 67 ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + KD V I S+ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R + ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAK--HDPEKI 416 R V P +A+ + +++ PL D+ + ++D L A P + Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADA-EATHGDLLDRLTADIGCSPRAL 420 Query: 417 AAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FKGS 466 AA LR G L A E+ P+ S R + + G R+ +G Sbjct: 421 AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGEGR 480 Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG+D L +K Sbjct: 481 ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLTKLK 540 Query: 527 LDK--GIQLK 534 + G QLK Sbjct: 541 DTRVAGKQLK 550 >gi|298369527|ref|ZP_06980844.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282084|gb|EFI23572.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 456 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/359 (38%), Positives = 206/359 (57%), Gaps = 18/359 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALAST 61 I AL+E+GY T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 13 IVSALTEQGYETPTPIQTAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST 72 Query: 62 LLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 SPA P+ L + PTRELA Q+ + ++ + V GGV++ ++ D Sbjct: 73 --------SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTAD 124 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI I+ PK+R Sbjct: 125 LRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQR 184 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT +P I LAK++ V +A++N S+++ + V + N + ++ Sbjct: 185 QTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSSNVEQHIIAVDALKKRNLLERLIV 244 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 IVFC T+ SV + T+ L ++ G+ SQQ R L ++G RV +A Sbjct: 245 DLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLRVLVA 304 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 TDVAARG+D+ +L VI+ EL + PE+ +HR GRTGRAG G+++ ++ + Q+ E + Sbjct: 305 TDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFEAI 363 >gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] Length = 484 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E GY + T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + AV GGV ++ + L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSDQLRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y ++ + +A N +++ VA D+ A+V ++R G K I Sbjct: 202 FSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQLIRERGLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS] gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS] Length = 496 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/343 (39%), Positives = 203/343 (59%), Gaps = 4/343 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 ++ + + A++E GY +T +QE + L +DV+ +AQTG+GKT AF L L +L Sbjct: 9 SLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQRMLKH 68 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122 EN SPA P+ AL + PTRELA QV ++++ LYAK T + V GG+ + + +L+ Sbjct: 69 ENASTSPARHPVRALVLLPTRELADQVAQQVK-LYAKYTNLRSTVVFGGIDMKPQTLELK 127 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G ++V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+R Sbjct: 128 KGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTT 187 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT SP I LA +Y ++ V + +A N S ++ V+ D+ A+ I++ Sbjct: 188 LLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVSDDDKRRALKQIVKQR 247 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G A VF +++ +R + L + AL G+ SQ ER AL + G + + TD Sbjct: 248 GITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDLLVCTD 307 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ D+ V + ++ N E+ +HR GRTGRAG G++V Sbjct: 308 VAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAV 350 >gi|189426069|ref|YP_001953246.1| ATP-dependent RNA helicase DbpA [Geobacter lovleyi SZ] gi|189422328|gb|ACD96726.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ] Length = 465 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 140/349 (40%), Positives = 203/349 (58%), Gaps = 14/349 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q L P L KD++ A+TGSGKT AFG+ L S L + Sbjct: 19 LASLGYAAMTPIQAHSLPPILASKDLIARAKTGSGKTAAFGIGLLSRLDTTALQLQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV +EL L + + V+ VC GGV + L++GAH+VVGTP Sbjct: 75 --ALVLCPTRELADQVAKELRRLARFTENIRVLTVC-GGVPFGPQLGSLEHGAHVVVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R L++S L+ +VLDEAD MLD+GF+DDI ++ ++P +R+ L+FSAT + Sbjct: 132 GRLLDHLRRGSLDLSSLQTLVLDEADRMLDMGFQDDIRSLIAAAPARRQTLLFSATYPDS 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ V V++ E+ I+ V R A+ IL + ++ +VFC+ Sbjct: 192 IADMSAAMQQTPVEVSV-DEDHVAGTIEQHFYAVEPDQRSEAVARILGRYRPESTLVFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E F +A+ G+L Q+ER L + A V +ATDVAARG+D+ + Sbjct: 251 TKLDCQELADDLKERGFAALAIHGDLEQRERDQVLVRFSNKSASVLVATDVAARGLDIKE 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 L VI+ ELS NPE HR GRTGRAG +G+++ ++ RR RL + Sbjct: 311 LAAVINFELSRNPEVHTHRIGRTGRAGEQGLAISLV----SRRDSRLIK 355 >gi|330719371|ref|ZP_08313971.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537] Length = 551 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/354 (37%), Positives = 200/354 (56%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + Q + ++++E GYV T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFNELGLSQELLQSIAEHGYVEATPIQEKTIPLTLVGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + N AL ++PTRELA+Q EL+ L V V V GG + R+ + Sbjct: 61 EHIDLNNKNIQ------ALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGADIRRQIQ 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L++ I+VGTPGRL DH K + + H+ +VLDEADEML++GF DDIE I++ +P Sbjct: 115 NLKSHPQILVGTPGRLLDHTNRKTVKLDHVNTLVLDEADEMLNMGFLDDIEAIIEKTPAT 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + + + I ++ +D V V +++ + + I Sbjct: 175 RQTLLFSATMPPAIKLIGVKFMTNPEHIQIEAKELTTDLVDQYFVRVRENEKFDTMTRIF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 K AIVF T+ V + L + L G+L+QQ RS L + + + Sbjct: 235 DVQAPKLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ D+ V + ++ +PE+ +HR GRTGRAG +G+SV FV P M Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEM 348 >gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] Length = 571 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/347 (38%), Positives = 205/347 (59%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + + Sbjct: 96 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 155 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 156 SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEIL 215 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 216 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 275 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ +A+V +LR G K I Sbjct: 276 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQLLRDRGLKQVI 335 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 336 VFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 395 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 396 DIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 442 >gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H 168] gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H 168] Length = 527 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 165/543 (30%), Positives = 274/543 (50%), Gaps = 42/543 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ + G+ T +Q + P L KD++ AQTG+GKT AFG+ L + Sbjct: 10 NISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGIPLLEKIDTR 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 N + P A+ + PTRELA+QV EL+ L Y ++ + V GG S+ R+ + L+ Sbjct: 70 NKK------PQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVY-GGQSIKRQIKALKK 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +++GTPGR+ DH+R LN+SH+ VVLDEAD MLD+GF DDI+ IL P R+ L Sbjct: 123 GVQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 FSATI I L+K YQK + + IA E I+ V SD+ + ++ + Sbjct: 183 FFSATIPETILDLSKRYQKKSQFIKIAHEKLTVPGIEQYYYEVRRSDKLKVLTRLIDLYS 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +++FC+TR V L + AL G +Q +R + R+G + +ATDV Sbjct: 243 PGLSLIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEILVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFRE 362 AARGID+ +E V + ++ + + +HR GRTGRAG+ G + FV+ +++ + + + + Sbjct: 303 AARGIDVNGVEAVFNYDVPQDTDYYVHRIGRTGRAGKTGKAFTFVVGKDIYKLRD-IQKY 361 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPE----KIA 417 ++ + P++ I + + ++ D D I + KK + ++ D + +IA Sbjct: 362 TKTRIIKQDIPTLTDIEQAKLENLIND--LTDYIDREHLKKYIKIIENLLDDDYTAIEIA 419 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 A + + + EI L +D+ A G +++G K Sbjct: 420 AALFKKYMENESSEGEINNNKL--------NDTGA----------EPGMVRLFINIGKKH 461 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG 537 ++ + + ++ + IGAI + + TFVEV + R +K+ K Y+ Sbjct: 462 NITPGHIVGAIAGETSLSGRLIGAIDLYDNFTFVEVPEESS---REVLKIMKN---NYIK 515 Query: 538 GEK 540 G+K Sbjct: 516 GKK 518 >gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida W619] gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619] Length = 559 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 167/547 (30%), Positives = 281/547 (51%), Gaps = 29/547 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++ L+ GY +++Q + L D++ AQTG+GKT AF L + + + Sbjct: 15 PNIVAAVLAT-GYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVSK- 72 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 P AL +APTRELA+QV E YAK GV V GG + + R ++NGA Sbjct: 73 -----REPQALILAPTRELALQVATAFET-YAKQMPGVNVVAVYGGAPMGPQLRAIRNGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRLCDH+R +S ++ +VLDEADEML LGF DD+E I D+ P R+ ++F Sbjct: 127 QIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTVLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I ++A+ + ++ V I S+ + + ID ++V + A++ +L Sbjct: 187 SATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I F T+ + L ++ AL+G+++Q +R + ++DGR + +ATDVAA Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + R Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQ 366 Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFL 421 V P+ +A+ + +++ PL ++ + ++ D L P ++A L Sbjct: 367 KVAEARLPNAQAVLDARIKKLTSSLAPLVAEA-EATHGELFDRLTEALGCSPRALSAALL 425 Query: 422 RIHRAG----LCAPEEITPV--SLVSGRDRFRDDSRAFKVGGGSRDN------FKGSSWF 469 R G L A E P+ S +R RA + G R+ +G Sbjct: 426 RKATNGQALDLAAVEREQPLVPSFAPRGERPERGDRAERSDRGERERRAPLPLAEGRVRC 485 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529 ++G++ A+ L+ + G+ R +IG I+V+ + +E+ DG++ L +K + Sbjct: 486 RTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLTKLKDTR 545 Query: 530 --GIQLK 534 G QLK Sbjct: 546 VAGKQLK 552 >gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] Length = 491 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 139/345 (40%), Positives = 205/345 (59%), Gaps = 5/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65 IP+++ A++E GY T +Q+ + L +DV+ AQTG+GKT F L L L Sbjct: 9 IPELL-RAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQRLARHA 67 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 + SPA P+ AL +APTRELA+QV ++ Y+K + + CI GGV + + +DL+N Sbjct: 68 STSTSPARHPVRALILAPTRELAMQVFESVKT-YSKYVPLRSTCIYGGVDMKPQIQDLRN 126 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV TPGRL DH++ K + + ++ +VLDEAD MLD+GF DI ILD P R+ L Sbjct: 127 GIEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLLPAARQSL 186 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA K+ + +A N I +R V+ + N + ++LR+ Sbjct: 187 LFSATFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGLKRNLLAHLLRHEP 246 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+VF +T+ + SR L H A+ G+ Q +R++ L+ + G+ RV +ATDV Sbjct: 247 DTQALVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSGKLRVLVATDV 306 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+ DL VI+ EL E+ +HR GRTGRAGR+G +V ++ Sbjct: 307 AARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRQGNAVSLV 351 >gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana] Length = 748 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 226/391 (57%), Gaps = 14/391 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++PQ + E+L +RG +L +Q A+L P L+ +D++ A+TG+GKT+AFG+ + L E Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167 Query: 66 NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 ++ P L +APTRELA QV +E++ + VC+ GGVS ++ Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSA 224 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G +VVGTPGR+ D I G+ L + ++ +VLDEAD+ML +GF + +E IL++ P KR Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238 + ++FSAT+ + LA+ Y + + +++ + + I A+ + + + ++ Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344 Query: 239 LRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 + + G KN IVF T+ + L+ + AL G++SQ +R L R G+ Sbjct: 345 ITVYAKGGKN-IVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFT 402 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 V +ATDVA+RG+D+P+++LVIH EL ++PE +HRSGRTGRAG++G ++ + + +R Sbjct: 403 VLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTV 462 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRIL 387 L R+ + P+V + E A +++ Sbjct: 463 RSLERDVGCHFEFISPPTVGDLLESSADQVV 493 >gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2] gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2] Length = 585 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 163/519 (31%), Positives = 263/519 (50%), Gaps = 30/519 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + +A+ E GY N T +Q + + KDVL + TG+GKT AFG+ A + + Sbjct: 9 ISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIP-AIEKVCQG 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R+ P AL I PTREL QV EL ++ K GV + GG + R+ + L+ G Sbjct: 68 TRY-----PNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKRGC 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183 IVVGTPGR+ DH+ + L + + V+LDEADEML++GF++DIE IL P+ + + + Sbjct: 123 GIVVGTPGRIMDHLNRRTLKLDNTNMVILDEADEMLNMGFKEDIEEILSMMPEGNEHQTI 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I + K +Q D VRV I S R ++ + NA+ +L ++ Sbjct: 183 LFSATWPAEILRITKEFQNDPVRVEIKSAQRTIDTVEQIYYDAPRGKKANALRVLLSHYD 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++FC+T+ V L +H + ++L G++ Q+ RS ++ R G + IATDV Sbjct: 243 PDLCMIFCNTKKMVDELCDELNKHNIKAISLHGDMKQEFRSRVMEQFRSGNYPILIATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFRE 362 AARGID+ D++LV++ ++ + E +HR GRTGRAG+KG+++ ++ QR R + R Sbjct: 303 AARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVSGGKQRAGIRDIIRY 362 Query: 363 ANVSVVWEPAPSVEAIRE--RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 ++V P+ + E R+A + I + ++ + L+A E IA Sbjct: 363 TKTNIVRHALPTSAQMMEANRNAFVAKVKEACDEGITEESMEIANELMA----EGIALEN 418 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 + + EI + R+ + AF + +VG + Sbjct: 419 IISALISMTYKNEIIDIEADEDVKRY---ASAFD-----------AITLKFNVGRNNGVQ 464 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 ++ + SG+N ++IG I V+ D T V+V A VD Sbjct: 465 PGNIVAAIIEESGLNGKAIGRIDVRKDFTLVDVEASKVD 503 >gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae EF01-2] Length = 486 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 199/349 (57%), Gaps = 4/349 (1%) Query: 4 FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N+ + + A++E GY +T +Q + L +DV+ +AQTG+GKT AF L L Sbjct: 5 FSNLMLAEPLARAVAEMGYTAMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64 Query: 62 LL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 LL E+ SPA P+ AL + PTRELA QV R++ T + V GG+ + + Sbjct: 65 LLRHESSSASPARHPVRALVLLPTRELADQVARQIALYARHTKLRSTVVFGGIDMKPQTL 124 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L+ G ++V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+ Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKE 184 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R L+FSAT SP I LA +Y V + +A N + ++ R D+ AI +L Sbjct: 185 RTTLLFSATFSPEIRRLASSYLHQPVTIEVARPNATAATVEQRFYSANDDDKRRAIHQVL 244 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R G K A +F +++ +R + L + AL G+ SQ ER ALQ + G + + Sbjct: 245 RTRGLKQAFIFVNSKLGCARLARSLEREGLRTAALHGDRSQDERLKALQAFKSGDVDLLV 304 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARG+D+ D+ V + ++ N E+ +HR GRTGRAG G++V ++ Sbjct: 305 CTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLV 353 >gi|20092752|ref|NP_618827.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A] gi|19918045|gb|AAM07307.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A] Length = 555 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 11/414 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +AL ++G+ T +QE ++ L+ E D++ AQTG+GKT AFG + + ++ Sbjct: 18 KALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAFGAPIIEKIPEKSGYVQ- 76 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV EL + + V GG S+ ++ R L++G IVVGT Sbjct: 77 -----AIILTPTRELAIQVSEELNSIKGDKKLHVVPIYGGQSMTQQLRVLKSGVDIVVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ K L++ H+ VLDEADEML++GF DDI+ IL ++ +RML FSAT+ Sbjct: 132 PGRIIDHLERKSLDLEHIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRMLFFSATMPK 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + K Y ++ V I E + V +D+ A+ I+ +VFC Sbjct: 192 PILGIVKKYMQNYEHVTIEKEELAAKLTEQIYFEVQENDKFEALSRIIDIEDEFYGLVFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L++ ++ AL G+LSQQER L R + V +ATDVAARGID+ Sbjct: 252 RTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQKINVLVATDVAARGIDIM 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 DL VI+ L +PE+ +HR GRTGRAG++G ++ + RR + + + + Sbjct: 312 DLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKSEMKKGR 371 Query: 372 APSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 P ++ + + R+ L++ + + GD +M + LL ++ EKI A L+ Sbjct: 372 IPEIKDVIKAKRARVKAELEETIKTEEY-GDCLEMSERLLEEYPAEKILAALLK 424 >gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria MC40-6] gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MC40-6] Length = 511 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 204/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + + Sbjct: 44 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 103 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEIL 163 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 164 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ A+V +LR G K + Sbjct: 224 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHGAVVQLLRDRGLKQVL 283 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 284 VFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 343 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 344 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390 >gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia phymatum STM815] gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum STM815] Length = 482 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 133/340 (39%), Positives = 198/340 (58%), Gaps = 4/340 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQRLLPLANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ P +R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPTERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N +++ VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRERSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 D+ +L VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 361 >gi|238897556|ref|YP_002923235.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465313|gb|ACQ67087.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 598 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 179/554 (32%), Positives = 273/554 (49%), Gaps = 41/554 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL++ GY + +Q + L DVL AQTGSGKT AFGL L + + Sbjct: 18 ILSALTDLGYEKPSPIQLECIPHLLNGSDVLGMAQTGSGKTAAFGLPLLQNIKPD----- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AP L +APTRELAVQV + L Y K G+ V GG H + + L+ G IV Sbjct: 73 -IKAPQILVLAPTRELAVQVAQALTNFSKYMK-GINVLALYGGQPYHVQLKALRQGPQIV 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL DH++ LN+S L +VLDEADEML +GF +D+E IL P + + +FSAT Sbjct: 131 VGTPGRLLDHLKRGTLNLSSLTGLVLDEADEMLRMGFIEDVENILAKIPAEHQTALFSAT 190 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI + + + K+ V I S DI+ V ++ A+V L AI Sbjct: 191 MPDAIRRITRRFMKEPKEVRIHSNVTTKPDINQSYWPVFGMRKNQALVRFLEVEDFDAAI 250 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 251 IFVRTKNATLEVAEALEDSGYNSAALNGDMNQSLREQTLERLKDGRLDILIATDVAARGL 310 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + + R RL + V+ Sbjct: 311 DVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV----ENRERRLLKNIE-RVI 365 Query: 369 WEPAPSVEAIR-ERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK------IAAG 419 +P P ++ + E +QR L+ I+ + +M LL K PE+ IAA Sbjct: 366 KQPIPEIQLPKAELLSQRRLEKFAATVRQHIESSDLEMYKTLLKKLRPEEPFDLEMIAAA 425 Query: 420 FLRI---HRAGLCAPEEITP---------VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 L++ R + P+ + V R +RD S + R + Sbjct: 426 LLKMAQSERPLILPPDPVRSARRECHEREVRSTHRRRDYRDSSE--RPSYRERRDIGEMQ 483 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRR 523 + + VG E R ++ + I+ + IG I + P + +E+ + V R Sbjct: 484 LYRIEVGRNDGVEIRHIVGAIANEGDISSRYIGNISLFPSHSTIELPKEMHKNIVSHCTR 543 Query: 524 TVKLDKGIQLKYLG 537 T L+K I +K LG Sbjct: 544 THILNKPINIKLLG 557 >gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii] gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii] Length = 576 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 174/519 (33%), Positives = 275/519 (52%), Gaps = 27/519 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY T +Q + P L +D+L A TG+GKT AF L L + P P AL Sbjct: 38 GYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQRIA-----HGPRQRPTAL 92 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELAVQV ++ + + V GG ++ + + L+ G ++V TPGR DH Sbjct: 93 VLVPTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQALRRGVEVIVATPGRALDH 152 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R K L ++ L+ VVLDEADEMLD+GF DD++ IL+ +P ++ +FSAT+ P I ++A+ Sbjct: 153 LRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQTALFSATMPPRIASIAR 212 Query: 199 NYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 + K+ V V IA E + + A +VA + +A+ +L K+A+VFC TR Sbjct: 213 RHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQHKVSALARVLDIATPKSALVFCRTRL 272 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 V T L ++ A+ G +SQ +R +Q R G+ + +ATDVAARG+D+P + Sbjct: 273 EVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELLVATDVAARGLDIPSVSH 332 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR--RAERLFREANVSVVWEPA- 372 VI+ +L S+ E +HR GRTGRAGR+G ++ +I QR RA +A ++V P+ Sbjct: 333 VINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPREQRLLRAVEQHTKAKITVAAVPSL 392 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-IHRA--GLC 429 + A R + +Q+ L ++ D +++V+ L A +P IAA ++ ++R+ G Sbjct: 393 GDLLAKRLERTKASIQETLEAGELE-DFRRVVEALSASAEPADIAAAAIKLVYRSHGGER 451 Query: 430 APEEITPVS------LVSGRDRF----RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 A EEI VS S R + + RA GG + + + VG+ + A Sbjct: 452 AEEEIPAVSTRPPEPYRSSRPSYGSAPQQGDRARAPRGGPSRGGRAAGTVRVYVGAGRAA 511 Query: 480 EARW--LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 R L+ + +G+ + IGAI V+ + V+V + Sbjct: 512 GIRPGDLVGAIANEAGVPSRMIGAIEVEERFSLVDVQEE 550 >gi|254787436|ref|YP_003074865.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901] gi|237683460|gb|ACR10724.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901] Length = 461 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 214/369 (57%), Gaps = 8/369 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + LS+ GY +T +Q A L L+ DVL A+TGSGKT FGL L L E Sbjct: 11 NLKPALLSNLSDLGYNTMTPIQAAALPAILQGSDVLGKAKTGSGKTATFGLGLLQRLEVE 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 R AL + PTRELA QV EL L + + GG + + L++G Sbjct: 71 RFRVQ------ALVLCPTRELADQVAAELRKLARSIHNIKILTLCGGAAFGPQVGSLEHG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHI+VGTPGR+ DH+R L + L+ +VLDEAD MLD+GF + ++ ILD +PK+R+ L+ Sbjct: 125 AHIIVGTPGRVHDHLRKGNLQLGDLQTLVLDEADRMLDMGFAETLDAILDLAPKQRQTLL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT AI ++AK Q + + + + + H DI+ V L +R + +L+ + Sbjct: 185 FSATYPEAIESMAKRVQHNPQVIEVEAVHSDH-DIEQMFYKVPLENRTQVLGLLLQKYLP 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++ +VFC+T+ L + F VAL G++ Q++R L + + A V +ATDVA Sbjct: 244 ESCMVFCNTKRETQDVADALLQQGFSAVALHGDMIQKDRDRTLVLFANQSASVMVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ +++LV++ +LS +PE +HR GRTGRAG++G +V ++ +N + + E + +++ Sbjct: 304 ARGLDIAEVDLVVNYQLSRDPEVHVHRIGRTGRAGKRGRAVSMLNENEKFKVELICADSD 363 Query: 365 VSVVWEPAP 373 S + P Sbjct: 364 ASPELKNPP 372 >gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43] Length = 397 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 134/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y +D + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] Length = 570 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 168/526 (31%), Positives = 263/526 (50%), Gaps = 20/526 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---- 63 P+++ +AL+E GY T +Q A + P L DV+ A TG+GKT AF L + + Sbjct: 25 PELL-QALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHRIRDGER 83 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 R +AP A+ + PTRELA QV + + GV V GG S+ R+ R L+ Sbjct: 84 GERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSRQLRALE 143 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGR DH+ L++S L+ VVLDEADEMLD+GF +DI+ IL+ +P R+ Sbjct: 144 EGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTILERTPDDRQT 203 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNIL 239 ++FSAT+ P I L + Y +D R+ ++ D I A +V + A+ +L Sbjct: 204 MLFSATMPPRIAGLVRRYLRDPRRIELSRAESLDGDAASITQTAYVVPRGHKPAALGRVL 263 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +VFC TR V R T+ + ++ AL G + Q +R+ + +R G A + + Sbjct: 264 DIETPEATVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQRNRVVGRLRTGTADLVV 323 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARG+D+ L V++ ++ S PE +HR GR GRAGR+G ++ + R + + Sbjct: 324 ATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGSAITLAEPGEHRMIKAI 383 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPE 414 R V P+V +R R + L + + GDE + +V+ L + D Sbjct: 384 ERVTGQPVPIRKLPTVADLRARRLE--LTRAALREVLAGDEDLDRYRAVVEPLTEEFDVT 441 Query: 415 KIAAGFLRI-HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 +IA +++ H A EE P + R R R K G R G + +S+ Sbjct: 442 EIALAAVKLAHDAEHATDEEEIPDVELRPEVRTR---RLPKNGRKGRRTSGGMTRLFVSL 498 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 G + + L+ + S + + +GAI + + V+V D Sbjct: 499 GRQAGVRPQDLVGAIAGESCLRGKDVGAIEIADRFSLVDVPDAAAD 544 >gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii] gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii] Length = 597 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 132/350 (37%), Positives = 204/350 (58%), Gaps = 10/350 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--R 68 I +AL++RG VNL +Q A+ P ++ D++ A+TG+GKT+AFG+ + + E + Sbjct: 15 IVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPILDNISREKSSMQ 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 F PA P A+ +APTRELA QV EL VV CI GGVS+ +RR L + + Sbjct: 75 FRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVV---CIYGGVSIEGQRRQLASSVEV 131 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ D + L ++ +K +LDEAD+ML +GF +++E I+ P +R ++FSA Sbjct: 132 VVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLPLQRHTMLFSA 191 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILR-YHGA 244 T+ I L Y K+ +++ EN + V+ +D ++ + ++L Y Sbjct: 192 TMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLLADLLTVYAKG 251 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AIVF T+ V++ + AL G++SQ +R L RDGR V +ATDVA Sbjct: 252 GKAIVFTKTKRDTDDVAAVMSRSI-GCEALHGDISQYQREKTLSGFRDGRFNVLVATDVA 310 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ARG+D+P+++L++H E+ + E +HRSGRTGRAG+KG + + N +R Sbjct: 311 ARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQKR 360 >gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] Length = 486 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 134/343 (39%), Positives = 202/343 (58%), Gaps = 4/343 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 ++ + + A++E GY +T +QE + L +DV+ +AQTG+GKT AF L L +L Sbjct: 9 SLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQRMLKH 68 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122 EN SPA P+ AL + PTRELA QV ++++ LYAK T + V GG+ + + +L+ Sbjct: 69 ENASTSPARHPVRALVLLPTRELADQVAQQVK-LYAKYTNLRSTVVFGGIDMKPQTLELK 127 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G ++V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+R Sbjct: 128 KGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTT 187 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT SP I LA +Y ++ V + +A N S ++ V D+ A+ I++ Sbjct: 188 LLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVTDDDKRRALKQIVKQR 247 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G A VF +++ +R + L + AL G+ SQ ER AL + G + + TD Sbjct: 248 GITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDLLVCTD 307 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ D+ V + ++ N E+ +HR GRTGRAG G++V Sbjct: 308 VAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAV 350 >gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare] gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 764 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 222/387 (57%), Gaps = 10/387 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L +RG +L +Q A+L P L +D++ A+TG+GKT+AFG+ + ++ ++ Sbjct: 98 LPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQIIEQD 157 Query: 67 DRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 + +P P AL +APTRELA QV +E+ K + VC+ GGVS + ++ L Sbjct: 158 EGRTPGRGRIPRALVLAPTRELAKQVEKEIMESAPK---LSTVCVYGGVSYNTQQNALSR 214 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGRL D I G L + ++ +VLDEAD+ML +GF +D+E IL P +R+ + Sbjct: 215 GVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQLPAERQSM 274 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR- 240 +FSAT+ + L++ Y + + +++ + + I A+ + + + + +++ Sbjct: 275 LFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLFAIPLTTTSKRTILSDLITV 334 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y IVF T+ + L + AL G++SQ +R L R G+ V +A Sbjct: 335 YAKGGKTIVFTRTKRDADEVSLALTTSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 393 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVA+RG+D+P+++L+IH EL ++PE +HRSGRTGRAG+ G ++ + N +R + L Sbjct: 394 TDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTTNQRRTVKSLE 453 Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL 387 R+ + P++E + + A+ ++ Sbjct: 454 RDVGCKFEFIGPPTMEEVLDSSAEHVI 480 >gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria AMMD] gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD] Length = 497 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 204/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + + Sbjct: 22 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ A+V +LR G K + Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHGAVVQLLRDRGLKQVL 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368 >gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC 15579] gi|187772242|gb|EDU36044.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC 15579] gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065] Length = 524 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 162/523 (30%), Positives = 272/523 (52%), Gaps = 48/523 (9%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ G+ +++QE + L DV+ AQTG+GKT+AFG + STL E Sbjct: 10 NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISTLCDE 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + AL + PTRELA+Q+ EL+ L Y+KT V+ GG S+ R+ +D+++ Sbjct: 70 GKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGR+ DHI + L + + +VLDEADEML++GF +DIE I+ S+P++++ + Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMASTPEEKQTM 183 Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I LA NY +KD + I ++ I V D+ AI I+ Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSE 243 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++AI+FC T+ V + + + V + G++SQ +R N L+ + +ATD Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 VAARGID+ ++ VI+ ++ + E+ +HR GRTGRA ++G + V P+ + R+ ER+ Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415 + + + P++E I E+ +L D I+ ++ + MV L D + Sbjct: 364 IKS---KITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSE 418 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD--SRAFKVGGGSRDNFKGSSWFSLSV 473 ++A + + L + E +S D+ + R F LSV Sbjct: 419 VSAALMEM----LFSKE----MSFDYTNDKLEAEVPVRLF-----------------LSV 453 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 G K + L+ + + + IG I + TF++VS++ Sbjct: 454 GRKDSINVKSLLTFIQDEASVRNHEIGDIDILDKFTFMDVSSN 496 >gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7] Length = 526 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 158/508 (31%), Positives = 259/508 (50%), Gaps = 37/508 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E G+ T +Q + + +D++ AQTG+GKT +FG+ + + +N Sbjct: 18 AVTEMGFEEATPIQAKAIPEVMTGQDIIGQAQTGTGKTASFGIPMLQKVDPKNKHVQ--- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+Q E+ L AK G+ V GG + ++ R L+ G +++GT Sbjct: 75 ---AIVLCPTRELAIQSADEIRKL-AKFMHGIKVLPIYGGQDIVKQIRSLKTGVQVLIGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R + + LK VVLDEADEML++GFR+DIE IL +P++R+ L+FSAT+ Sbjct: 131 PGRVMDHMRRHTIKLDDLKIVVLDEADEMLNMGFREDIETILSQTPEERQTLLFSATMPQ 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ YQK+A V + ++I+ V +++ + +L + ++VFC Sbjct: 191 PIMEIARTYQKNAKIVKVVKRELTVANIEQYYYEVRPKNKEEVLSRLLDIYNPALSVVFC 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V + L + L G++ QQ+R + R+GR + +ATDVAARGID+ Sbjct: 251 NTKRQVDELVEGLKGRGYFAEGLHGDMKQQQRDRVMNGFRNGRTEILVATDVAARGIDVD 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 D++ V + +L + E +HR GRTGRAG+ G + I + + + R ++ + Sbjct: 311 DVDAVFNYDLPQDDEYYVHRIGRTGRAGKNGKAFTFITGREFYKLKDIQRYCRTKIIAKQ 370 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK--IAAGFLRIHR 425 PS+ + A +I + + I D K M++ L K D +AA FLR Sbjct: 371 VPSLNDVANVKADKIFEKVAGM--IDEDNLKPYIRMIEEKLEKEDYTTLDLAAAFLR--- 425 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485 + +E V + D F D G+ D G +++G QKA ++ Sbjct: 426 --MALGDEDKSVEV----DDFGD--------TGAED---GMVRLFINIGKNQKARPGDIL 468 Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + +GI IG I + TFVEV Sbjct: 469 GAIAGETGIAGSLIGTIDMYDKYTFVEV 496 >gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii] gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii] Length = 614 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 132/350 (37%), Positives = 204/350 (58%), Gaps = 10/350 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--R 68 I +AL++RG VNL +Q A+ P ++ D++ A+TG+GKT+AFG+ + + E + Sbjct: 15 IVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPILDNISREKSSMQ 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 F PA P A+ +APTRELA QV EL VV CI GGVS+ +RR L + + Sbjct: 75 FRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVV---CIYGGVSIEGQRRQLASSVEV 131 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ D + L ++ +K +LDEAD+ML +GF +++E I+ P +R ++FSA Sbjct: 132 VVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLPLQRHTMLFSA 191 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILR-YHGA 244 T+ I L Y K+ +++ EN + V+ +D ++ + ++L Y Sbjct: 192 TMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLLADLLTVYAKG 251 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AIVF T+ V++ + AL G++SQ +R L RDGR V +ATDVA Sbjct: 252 GKAIVFTKTKRDTDDVAAVMSRSI-GCEALHGDISQYQREKTLSGFRDGRFNVLVATDVA 310 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ARG+D+P+++L++H E+ + E +HRSGRTGRAG+KG + + N +R Sbjct: 311 ARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQKR 360 >gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1] gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1] Length = 520 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 154/509 (30%), Positives = 262/509 (51%), Gaps = 55/509 (10%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GYV+ + +QE + L +D++ AQTG+GKT+AFG L S + E AL Sbjct: 23 GYVSPSPIQEKSIPVLLEGQDIIGQAQTGTGKTLAFGSVLLSKIQKEGKHVK------AL 76 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA+Q+ EL+ + T + + GG + R+ +DL+ GA IVVGTPGR+ D Sbjct: 77 ILSPTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKDLKRGADIVVGTPGRVQDL 136 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L I+++ +VLDEADEML++GF +DIE IL ++P ++ ++FSAT+ I +A Sbjct: 137 MRRRVLKINNIDFMVLDEADEMLNMGFVEDIETILKATPDNKQTVLFSATMPATIKKIAS 196 Query: 199 NY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 NY Q D + + I S+ + S + +++ + IL +N I+FC T+ SV Sbjct: 197 NYMQDDYMHIQIKSKTKTASTVSQYYFETRPTNKFETLCRILDSRQMENTIIFCKTKRSV 256 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + + V A+ G+LSQ +R+N L+ + G + +ATDVAARGID+ ++ VI Sbjct: 257 DEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLVATDVAARGIDVDNISHVI 316 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 + E+ + E +HR GRTGRA +KG + ++ + + + N + PS + Sbjct: 317 NYEMPQDEELYIHRIGRTGRANKKGEAYSLVTNREKNFLMSIQKRTNSHIEKLDVPSNQE 376 Query: 378 IRERDAQRILQD----------PLFLDSIQGDEKKM-VDVLLAKHDPEKIAAGFLRIHRA 426 I ++ + +L D +F+D+I+ M DV+ A L Sbjct: 377 IFDQKIKELLFDVQEEMLKSHKDVFMDTIKDIPHDMRTDVM----------ATLL----- 421 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQKAEARWL 484 +C + + G D +++++ A GS + ++ GS + + + Sbjct: 422 SMCYQQRV-------GFD-YQEETSA------------GSQYDRVFMTCGSMDRINVKDV 461 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + L + I IG I ++ TFV++ Sbjct: 462 IEFLTKYGKIKSSDIGDITIKRKFTFVDI 490 >gi|225569182|ref|ZP_03778207.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM 15053] gi|225161981|gb|EEG74600.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM 15053] Length = 526 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 157/522 (30%), Positives = 269/522 (51%), Gaps = 46/522 (8%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTL 62 E P+++ +A+ + G+ + +Q + P +RE +D++ AQTG+GKT AFG+ L + Sbjct: 9 LELCPEIM-KAVKKMGFEEASPIQAKAI-PLVREGRDIIGQAQTGTGKTAAFGIPLLEKI 66 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRER 118 +N + A+ + PTRELA+QV E+ E+++ G+ V GG + ++ Sbjct: 67 DPKNKKLQ------AVVLCPTRELAIQVADEIRTLAEYMH---GIKVLPIYGGQEIVKQI 117 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L++G +++GTPGR+ DH+R K + + H+ VVLDEADEML++GFR+DIE IL+ P+ Sbjct: 118 RSLKSGVQLMIGTPGRVMDHMRRKTVKMEHVHTVVLDEADEMLNMGFREDIETILEGVPQ 177 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT+ I + K +QK A V + + +I+ V +++ + + Sbjct: 178 ERQTVLFSATMPKPILDITKKFQKHAEIVKVTKKELTVPNIEQFYYEVKPKNKEEVLSRL 237 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + K ++VFC+T+ V L + L G+L Q +R +Q R G+ + Sbjct: 238 LDIYNPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQAQRDRVMQGFRSGKTDIL 297 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARGID+ ++E V + +L + E +HR GRTGRAGR G S + + Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLRE 357 Query: 359 LFREANVSVVWEPAPSVEAIRE-------RDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411 + R + + PS++ + +A RI++ IQ ++++ D Sbjct: 358 IQRYCKTKIYAQKVPSLDDVANTKMEKVMEEASRIIEQEDLGTFIQLVQEEINDTDYTSM 417 Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471 D IAA L+ +C T + + D F D G+ + G + Sbjct: 418 D---IAAALLK-----MC-----TGTAEETDVDNFEDT--------GAEE--PGMVRLFI 454 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++G K KA+ ++ + SG+ + +G I + TFVEV Sbjct: 455 NIGKKHKAKPGDILGAIAGESGMPGKVVGTIDMYDKYTFVEV 496 >gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC 43734] gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC 43734] Length = 707 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 168/543 (30%), Positives = 278/543 (51%), Gaps = 53/543 (9%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + A+ + G+ + +Q + + DV+ AQTG+GKT AF L + S + Sbjct: 81 LPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRIDVSK 140 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 141 ------RHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGA 194 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL+ +P +++ +F Sbjct: 195 HIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVALF 254 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L+K Y D + + + R +I+ +LV+ D+ +A+ IL + Sbjct: 255 SATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSHRDKLDALTRILEITEFE 314 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G++ Q R + ++DGR + +ATDVAA Sbjct: 315 AMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAA 374 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ + V + ++ + E+ +HR GRTGRAGRKG ++ FV P+ +RR + A Sbjct: 375 RGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPR--ERRLLKSIERAT 432 Query: 365 VSVVWE-PAPSVEAIRERDAQRI-------LQDP---LFLDSI----QGDEKKMVDVLLA 409 S + E P+V+A+ E ++ L DP +F D + + +E ++ D+ A Sbjct: 433 KSRLNEIELPTVDAVNEARKEKFRDSLTESLADPQIGIFRDLVKEYAESNEVELADIAAA 492 Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF------ 463 + FL + P+E P RDR+ DD+R+ GGG+ F Sbjct: 493 LAAQLQAGEDFLMKEK-----PKEERPRR----RDRYGDDNRS---GGGAYKPFDERFNK 540 Query: 464 ----------KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 K + + LSVG +Q+ ++ L G++ + G I + + + VE+ Sbjct: 541 EAPRITDRNGKELAVYRLSVGHRQRVRPGAIVGALANEGGMSSRDFGRISIFAEHSLVEL 600 Query: 514 SAD 516 AD Sbjct: 601 PAD 603 >gi|76808776|ref|YP_332762.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b] gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b] Length = 559 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 99 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 158 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 159 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 218 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 219 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 278 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 279 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 338 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 339 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 398 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 399 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 445 >gi|71277821|ref|YP_268464.1| RNA helicase DeaD [Colwellia psychrerythraea 34H] gi|71143561|gb|AAZ24034.1| RNA helicase DeaD [Colwellia psychrerythraea 34H] Length = 611 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 146/376 (38%), Positives = 217/376 (57%), Gaps = 13/376 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + A+ G+ + T +Q + P L KDVL AQTG+GKT AFGL LA+ Sbjct: 22 LPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPA----LAKI 77 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 D + P + +APTRELA+QV +E G+ VA GG S + + L+ GA Sbjct: 78 D--TSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGA 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL DH+R K L + L+ VLDEADEML++GF +DI++ILD PK +M +F Sbjct: 136 QVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLF 195 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ PAI +A + KD + +A+ + ++I A V+ + A+ I Sbjct: 196 SATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYD 255 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F TR + L + +AL+G+L+Q +R + M+ G++ + +ATDV A Sbjct: 256 AMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVA 315 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362 RG+D+P + LVI+ +L + E +HR GRTGRAGR+GMS+ FV P+ M R ERL Sbjct: 316 RGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERL--- 372 Query: 363 ANVSVVWEPAPSVEAI 378 N +V+ P+++ I Sbjct: 373 TNGTVLNYDLPNIQDI 388 >gi|89902341|ref|YP_524812.1| ATP-dependent RNA helicase DbpA [Rhodoferax ferrireducens T118] gi|89347078|gb|ABD71281.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118] Length = 473 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 137/340 (40%), Positives = 200/340 (58%), Gaps = 12/340 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L + GY+ +T +Q A L L KD++ A+TGSGKT AF LAL +R +P Sbjct: 33 LQQLGYLEMTPIQAASLPAALAGKDLIAQAETGSGKTAAFALALL-------ERLNPRRF 85 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV E+ L T VV +C GGV++ +R L+ GAHIVVGT Sbjct: 86 AVQALVLCPTRELADQVTIEIRRLARATDNIKVVTLC-GGVALRGQRASLEQGAHIVVGT 144 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ + LN+ L +VLDEAD MLD+GF DD+ + PK+R+ L+FSAT Sbjct: 145 PGRVMDHLAREYLNLEALNTLVLDEADRMLDMGFFDDMATVAKQCPKERQTLLFSATYPE 204 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA+ + ++ +RV +A++ + S I+ R V ++R A+ +L + + + FC Sbjct: 205 GIEKLAQQFMREPLRVQVAAQQTE-SLIEQRFYEVTRANRFEAVALLLNHFRPISTLAFC 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ L F +AL GEL Q+ER L + A V +ATDVA+RG+D+ Sbjct: 264 NTKQQCKDLVTYLQAQGFSALALYGELEQRERDQVLAQFSNRSASVLVATDVASRGLDIT 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 LE VI+ +++ +PE +HR GRTGRAG G+++ + N Sbjct: 324 QLEAVINVDITPDPEVHVHRIGRTGRAGESGLALSLASMN 363 >gi|326802990|ref|YP_004320808.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae ACS-120-V-Col10a] gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae ACS-120-V-Col10a] Length = 508 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 130/341 (38%), Positives = 202/341 (59%), Gaps = 7/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +Q + L +DVL AQTG+GKT AFGL L + + Sbjct: 14 QAVKNMGFEETTPIQAQTIPYALEGRDVLGQAQTGTGKTAAFGLPLLEKIDHHTEHIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL IAPTRELA+Q G+EL L + GV GG ++ R+ ++ GA +VVGTP Sbjct: 72 ----ALVIAPTRELAIQNGQELYRLGKEKGVRTVNVYGGANIRRQIHQIKKGAPVVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D ++ K LN++ ++ +VLDEADEML++GF +DIE I+ ++P R+ L+FSAT+ Sbjct: 128 GRLIDLMKRKVLNLNFIETLVLDEADEMLNMGFIEDIETIIRATPSNRQTLLFSATMPKE 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + +++ +D V V I ++ ID ++ + + + AK AIVF Sbjct: 188 IQRIGEHFMQDPVTVKIEAKEMTADTIDQYFTKCHDREKFDLLTRFIDVSHAKLAIVFAR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L E +Q + G+LSQ++RS+ ++ +DGR + +ATDVAARG+D+ + Sbjct: 248 TKRRVDEVSRGLIERGYQAEGIHGDLSQEKRSSIMKDFKDGRLEILVATDVAARGLDISN 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +PE+ +HR GRTGRAG+ GMS+ FV M Sbjct: 308 VTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSITFVSNHEM 348 >gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668] gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177] gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346] gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668] gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346] Length = 481 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 541 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 154/509 (30%), Positives = 258/509 (50%), Gaps = 33/509 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + +Q A + L +DV+ AQTG+GKT AFG+ L +R S Sbjct: 30 QAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV-------ERVSTE 82 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ + PTRELA+QV E+ + V GG S+ + R L+ G IV+GTP Sbjct: 83 PRVQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQGVQIVIGTP 142 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L++S ++ VVLDEADEMLD+GF DDIE IL +P R+ ++FSAT Sbjct: 143 GRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTMLFSATFPNE 202 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + LA Y +D + + ID V ++ +++ I+ + I+FC Sbjct: 203 VKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVDSEDIQLGIIFCR 262 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L + L G+LSQ +R ++ R + +ATDVAARG+D+ D Sbjct: 263 TKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARGLDVDD 322 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ +PE+ +HR GRTGRAG++G+++ ++ + +++ RE + Sbjct: 323 VTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKITVREV 382 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQ----GDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 PS+E + ER A+ + +D I+ + ++ L+ +HDP IA+ L++ +G Sbjct: 383 PSLEDVAERQAE--MWRSKIVDVIREGGLAPYRAILSGLVDEHDPIDIASALLKLASSG- 439 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGG-GSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487 D R +S + G G+R G F ++VG + + + Sbjct: 440 ---------------DGNRTESDEYDFGDTGAR---PGMVRFFVNVGRTSRMSPQDFVRA 481 Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + +G+ ++G I + TF+EV + Sbjct: 482 ISEEAGVPGDAVGRIDMFEKFTFIEVEEE 510 >gi|183598940|ref|ZP_02960433.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827] gi|188021152|gb|EDU59192.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827] Length = 457 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 141/362 (38%), Positives = 210/362 (58%), Gaps = 10/362 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GYV +T +QEA L L KDV A+TGSGKT AFGL L + A+ +FS S Sbjct: 18 LTELGYVTMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAK--QFSTQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV EL L Y ++ +C GGV +R L + AHI+V TP Sbjct: 75 ---LVLCPTRELADQVASELRRLARYMANIKILTLC-GGVPFSVQRDSLIHAAHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ + + + L+ +VLDEAD MLD+GF DDI+ ++ +P R+ L+FSAT Sbjct: 131 GRLLDHLNKETVKLDTLQTLVLDEADRMLDMGFADDIDEVISYAPISRQTLLFSATWPET 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 IT +++ Q++A+ + I S + + I+ R VA ++ + + +L + +VFC+ Sbjct: 191 ITAMSQRIQRNAITIEINSVDELPA-IEQRFYEVARHEKIDLLQKLLSQQQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E V+ L G++ Q+ER L +G +RV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVYDALNECHQSVLVLHGDMEQRERDQTLVRFANGSSRVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L++VI+ ELS +PE +HR GRT RAG G+++ + +RA L N+ + W+ Sbjct: 310 LDMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANVLEEMLNIKLNWKSV 369 Query: 373 PS 374 P+ Sbjct: 370 PT 371 >gi|53718749|ref|YP_107735.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243] gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344] gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4] gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1] gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247] gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a] gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305] gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894] gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576] gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b] gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243] gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344] gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1] gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a] gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247] gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305] gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576] gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4] gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b] Length = 482 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus stomatis DSM 17678] gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus stomatis DSM 17678] Length = 538 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 159/521 (30%), Positives = 261/521 (50%), Gaps = 38/521 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + + I A+ + GY + +Q + + DV+ AQTG+GKT +F + + + +N Sbjct: 11 VSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILENIDRDN 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 + A+ + PTRELA+QV E+ L Y + G+ GG + R+ + L+ G Sbjct: 71 RKLQ------AIVLCPTRELAIQVSEEVRKLAKYMQ-GIRTLPIYGGQPIDRQIKALKGG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 + +GTPGR+ DHI K L + +K VVLDEADEMLD+GFR+DIE IL + P++R+ + Sbjct: 124 VQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVPEERQTAL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ AI L K YQKD V + + + S+I + S++ + +L + Sbjct: 184 FSATMPKAILELTKKYQKDPVHIKVVRKTLTVSNIKQYYIETRKSNKLEVLTRLLDVYNP 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K +VF +T+ L + +L G+L Q +R + R G + +ATDVA Sbjct: 244 KLTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDILVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARGID+ D+E VI+ EL + E +HR GRTGRAGR+G++ F + M R+ + + R Sbjct: 304 ARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGREGIAFSFAFGREM-RKLKDIERYT 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 +V PSV + E+ + QG ++ + + +AKH ++ Sbjct: 363 KSKIVKHDIPSVNDVEEKKVSQFF---------QGVKETLEEGNIAKH------VQWIE- 406 Query: 424 HRAGLCAPEEITPVSLVSG--RDRFRDDS--RAFKVGGGSRD----NFKGSSWFSLSVGS 475 C E+ + + + + ++ D+ + SRD N + L+VG Sbjct: 407 ---DFCNEEDYSMIDICAAILKNSMGDEEMQEIVEEAPKSRDRHRLNQSDVTRLFLNVGK 463 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 Q+ A+ ++ + +GI + IG I V TFV+V + Sbjct: 464 NQRILAKDILGAIAGETGIRSKFIGNIDVYDKYTFVDVDKN 504 >gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118] gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118] Length = 506 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 131/343 (38%), Positives = 200/343 (58%), Gaps = 2/343 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69 + A+++ GY +T +Q + L+ +DV+ +AQTG+GKT AF L L +L EN Sbjct: 26 LARAVADMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLLQRMLKHENSST 85 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + ++ T + AV GG+ + + +L+ G ++ Sbjct: 86 SPARHPVRALVLLPTRELADQVAQAIKDYAVHTNLRSAVVFGGMDMKPQTLELKKGVEVL 145 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DHI K ++ ++ VVLDEAD MLD+GF D++ IL PK+R L+FSAT Sbjct: 146 VATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRITLLFSAT 205 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA +Y +D V + +A N S ++ V D+ +A+ IL+ G K A Sbjct: 206 FSSEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVDADDKRHALHQILKSRGMKQAF 265 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF +++ +R + L + AL G+ SQ ER AL+ + G + + TDVAARG+ Sbjct: 266 VFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALEAFKSGEVDLLVCTDVAARGL 325 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 D+ D+ V + ++ N E+ +HR GRTGRAG G++V + ++ Sbjct: 326 DIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGAAGLAVSFVAKS 368 >gi|317047085|ref|YP_004114733.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp. At-9b] gi|316948702|gb|ADU68177.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b] Length = 459 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 216/381 (56%), Gaps = 13/381 (3%) Query: 1 MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 M F + Q+ + L E G+ +T +Q A L L+ +DV A+TGSGKT AFG+ Sbjct: 1 MTAFSTLTQLPASQLDNLREMGFDAMTPIQAAALPAILQGRDVRAQAKTGSGKTAAFGIG 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 L + +N +F AL + PTRELA QV L L + + ++ +C GG + Sbjct: 61 LLQRI--DNSQFHTQ----ALVLCPTRELADQVSNVLRQLARFTRNIKILTLC-GGQPMS 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 +R L + HIVVGTPGR+ DH++ L+++ L+ +VLDEAD ML++GFRDD+E I+ Sbjct: 114 AQRDSLVHAPHIVVGTPGRILDHLKRDNLDLNQLQTLVLDEADRMLEMGFRDDMEAIIGF 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 +P R+ L+FSAT I +L++ YQ+DA+ V +E + I+ R + V+ S+R N + Sbjct: 174 TPAARQTLLFSATWPDTIASLSERYQRDALAVATETEAELPA-IEQRFIEVSASERTNLL 232 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +L + +VFC+T+ L + +AL G+L Q++R L +G Sbjct: 233 SALLSQQQPTSCVVFCNTKRECDDIAAALNDRQISALALHGDLEQRDRERVLIRFANGSI 292 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 RV IATDVAARG+D+ L LV++ L+ +PE LHR GRTGRAG G++V + + R Sbjct: 293 RVLIATDVAARGLDIKSLALVVNYHLAWDPEVHLHRIGRTGRAGESGLAVSFVAADEMAR 352 Query: 356 AERLFREANVSVVWEPAPSVE 376 A L S+ W A +++ Sbjct: 353 AHALEDYLQQSLNWVAASTLK 373 >gi|77460208|ref|YP_349715.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1] gi|77384211|gb|ABA75724.1| cold-shock dead-box protein A [Pseudomonas fluorescens Pf0-1] Length = 557 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 174/552 (31%), Positives = 286/552 (51%), Gaps = 33/552 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 11 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P+ P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 67 ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R + + +VLDEADEML LGF DD+E I + P+ R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I S+ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R + ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCTPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FK 464 +AA LR G L A E+ P+ S R + + G R+ + Sbjct: 419 ALAAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGE 478 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG+D L Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTK 538 Query: 525 VKLDK--GIQLK 534 +K + G QLK Sbjct: 539 LKDTRVAGKQLK 550 >gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114] gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114] Length = 487 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 136/347 (39%), Positives = 204/347 (58%), Gaps = 4/347 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPA 72 AL+++GY N T +Q A + L D+L +AQTG+GKT AF L L SPA Sbjct: 40 ALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLELLKRYATSSTSPA 99 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ G IVV T Sbjct: 100 MHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCEIVVAT 159 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI I+ PK+R+ L+FSAT SP Sbjct: 160 VGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSP 219 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250 I LA+++ V +A++N +++++ + V AL R I+ H IVF Sbjct: 220 PIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSLLERLIVDLH-MNQVIVF 278 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ SV + T+ L ++ G+ SQQ R L ++G RV +ATDVAARG+D+ Sbjct: 279 CKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATDVAARGLDI 338 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +L VI+ EL + PE+ +HR GRTGRAG G+++ ++ + Q+ E Sbjct: 339 AELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFE 385 >gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411] gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411] Length = 713 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 168/543 (30%), Positives = 278/543 (51%), Gaps = 53/543 (9%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + A+ + G+ + +Q + + DV+ AQTG+GKT AF L + S + Sbjct: 81 LPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRIDVSK 140 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 141 ------RHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGA 194 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL+ +P +++ +F Sbjct: 195 HIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVALF 254 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L+K Y D + + + R +I+ +LV+ D+ +A+ IL + Sbjct: 255 SATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSHRDKLDALTRILEITEFE 314 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G++ Q R + ++DGR + +ATDVAA Sbjct: 315 AMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAA 374 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ + V + ++ + E+ +HR GRTGRAGRKG ++ FV P+ +RR + A Sbjct: 375 RGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPR--ERRLLKSIERAT 432 Query: 365 VSVVWE-PAPSVEAIRERDAQRI-------LQDP---LFLDSI----QGDEKKMVDVLLA 409 S + E P+V+A+ E ++ L DP +F D + + +E ++ D+ A Sbjct: 433 KSRLNEIELPTVDAVNEARKEKFRDSLTESLADPQIGIFRDLVKEYAESNEVELADIAAA 492 Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF------ 463 + FL + P+E P RDR+ DD+R+ GGG+ F Sbjct: 493 LAAQLQAGEDFLMKEK-----PKEERPRR----RDRYGDDNRS---GGGAYKPFDERFNK 540 Query: 464 ----------KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 K + + LSVG +Q+ ++ L G++ + G I + + + VE+ Sbjct: 541 EAPRITDRNGKELAVYRLSVGHRQRVRPGAIVGALANEGGMSSRDFGRISIFAEHSLVEL 600 Query: 514 SAD 516 AD Sbjct: 601 PAD 603 >gi|269124787|ref|YP_003298157.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora curvata DSM 43183] gi|268309745|gb|ACY96119.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM 43183] Length = 562 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 176/525 (33%), Positives = 269/525 (51%), Gaps = 20/525 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY T +Q + L +D+L A TG+GKT AF L +L R + Sbjct: 24 ALAGLGYEEPTPIQREAIPHLLAGRDLLGQAATGTGKTAAFAL----PILHRTPRPADEP 79 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV + GV V GG + R+ + L+ G +VV TPG Sbjct: 80 DPGALVLVPTRELAVQVADAFHRYGREMGVRVLPVYGGAPIGRQIQVLKRGVDVVVATPG 139 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R D I L ++ L+ VVLDEADEMLD+GF +DIE IL +P +R+ ++FSAT+ P I Sbjct: 140 RALDLIDRDVLRLARLRTVVLDEADEMLDMGFAEDIEAILAQTPPQRQTVLFSATVPPRI 199 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +A+ + ++ VR+ IA R+ + RA +V + + A+ +L AIVF Sbjct: 200 DGIARRHLREPVRIEIARPEREVGRPPLVRQRAYVVDRAHKPAALGRLLDVEAPTAAIVF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TR V T++L ++ AL G +SQ +R + +R G A + IATDVAARGID+ Sbjct: 260 CRTRDQVDELTEMLNGRGYRAEALHGGMSQDQRDRVMGRLRAGTAELLIATDVAARGIDV 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L V++ + S+P++ +HR GR GRAGR+G++ + R + + R + E Sbjct: 320 EHLTHVVNYHVPSDPDSYVHRIGRVGRAGREGVAFTLAEPREHRMLKSIERATGHKITIE 379 Query: 371 PAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI-HRA 426 P+V +R R + L++ L D ++ + +V+ L + D ++A +++ A Sbjct: 380 KIPTVADLRARRLELTRAALRESLLTDDLE-PYRVVVETLSDEFDVMEVAMAAVKLAQEA 438 Query: 427 GLCA--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 G A EEI V+ R+ R + G +G + L VG + + L Sbjct: 439 GGAAGDEEEIPEVAHRPPREGRDGGPRRERRAAGP--PPEGMTRLFLGVGRRAGVRPQDL 496 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV---SADGV-DLLRRTV 525 + + S + + IGAI + + VEV +AD V D LRRT Sbjct: 497 VGAIAGESSLRGRDIGAIEIADRFSLVEVPEHAADEVIDALRRTT 541 >gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia vietnamiensis G4] gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis G4] Length = 512 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 134/347 (38%), Positives = 202/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + Sbjct: 44 ILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPHASTSA 103 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQMAELRRGVEIL 163 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 164 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 224 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRGRGLKQVI 283 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 284 VFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIEALVATDVAARGL 343 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 344 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390 >gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 623 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 131/377 (34%), Positives = 220/377 (58%), Gaps = 12/377 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E L+ RG L +Q A+L P ++ KD++ A+TG+GKT+AFG+ + +L N+ Sbjct: 96 PRIV-ERLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNE 154 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 + PLA+ +APTRELA QV +E + ++ + +C+ GGV + ++ R L G Sbjct: 155 KNGSGRNPLAIILAPTRELARQVEKE----FRESAPLDTLCVYGGVPISQQMRTLNYGVD 210 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ D +R LN+S ++ +VLDEAD+ML +GF + +E I++ P+ R+ ++FS Sbjct: 211 VVVGTPGRVIDLLRRGVLNLSEIQFMVLDEADQMLAVGFDEAVEVIMEKLPQNRQSMLFS 270 Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243 AT+ I L Y KD V +++ SE + I +++ + + + +++ H Sbjct: 271 ATMPSWIRKLTNQYLKDPVIIDLVGDSEQKLPEGISLYSIVSENYGKSSILGPLIKEHAD 330 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ R + + AL G++SQ +R L RDGR + +ATDV Sbjct: 331 GGKCIVFTQTKREADRLAYAMGRS-YACQALHGDISQNQRERTLSGFRDGRFNILVATDV 389 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++LV+H E+ ++ E +HRSGRT RAG+KG+++ + R + + E Sbjct: 390 AARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAGKKGIAILMYTYEQSRTVKGI--EQ 447 Query: 364 NVSVVWEPAPSVEAIRE 380 ++ + P V A E Sbjct: 448 DIGCRFTELPKVAATDE 464 >gi|91782534|ref|YP_557740.1| putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400] gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400] Length = 491 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 202/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E GY T +QE + L +D++ +AQTG+GKT +F L + LL + + Sbjct: 22 ILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + AV GGV ++ + L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y +D + +A N +++ VA D+ A+V ++R G K I Sbjct: 202 FSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEGDKTGAVVQLIRERGLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR ++ L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLSRSLERDGVIATAIHGDRSQNERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|218512664|ref|ZP_03509504.1| ATP-dependent RNA helicase protein [Rhizobium etli 8C-3] Length = 173 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 115/173 (66%), Positives = 135/173 (78%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F + I +AL +RGY LT VQ+++L+PDL D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL ++RF A APLAL IAPTRELA+QV RELEWLY TG V+A C+GG+ + ERR Sbjct: 61 TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 L+ GAHIVVGTPGRLCD IR + L++S LKA VLDEADEMLDLGFR+D+EFIL Sbjct: 121 LERGAHIVVGTPGRLCDPIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFIL 173 >gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain protein [Micromonospora sp. L5] gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5] Length = 585 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 167/513 (32%), Positives = 261/513 (50%), Gaps = 21/513 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70 ALS GY T +Q + P L +D+L A TG+GKT AF L L + AE D Sbjct: 34 ALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQRMPVGRAEGD--- 90 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P++L + PTRELAVQV G V GG + R+ R L +G +VV Sbjct: 91 ----PVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHGVDVVVA 146 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR DHI L + L VVLDEADEMLD+GF +DIE IL+ +P R+ ++FSAT+ Sbjct: 147 TPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVLFSATMP 206 Query: 191 PAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 I LA+ + D VR+ I E + + A +VA + + A+ +L A Sbjct: 207 ARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDVESPTAA 266 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVFC +R V R T+ + ++ AL G +SQ++R + +R G A + +ATDVAARG Sbjct: 267 IVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARG 326 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ L V++ ++ S PE+ +HR GR GRAGR+G+++ + R + + R + Sbjct: 327 LDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTGQRI 386 Query: 368 VWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI- 423 + P+V +R R Q L++ L D + + +V+ L + D ++A +++ Sbjct: 387 AIDKIPTVADMRTRRLELTQGALRESLLEDDLD-PYRAIVESLTDEFDLVEVALAAVKLA 445 Query: 424 HRA---GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 H A G EEI V + R+ + + G +R G++ + +G + Sbjct: 446 HEATSPGSDDEEEIPQVPVRGPREGRPEAGGRGERRGPARPRTGGTTQVFIGLGRRAGVR 505 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + L+ + + I+ + IG+I + + VEV Sbjct: 506 PQDLVGAITGETRISGRDIGSIEIADRFSLVEV 538 >gi|253996648|ref|YP_003048712.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera mobilis JLW8] gi|253983327|gb|ACT48185.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8] Length = 459 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 135/343 (39%), Positives = 199/343 (58%), Gaps = 2/343 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72 AL+E GY T +Q + L D++ AQTG+GKT AF L L LL N+ SPA Sbjct: 24 ALTESGYTTPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFSLPLLQKLLPLANNSTSPA 83 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA+QV ++ T + V GGV + + L+ G ++V T Sbjct: 84 KHPVRALILTPTRELAIQVEESVKAYAKHTQLRSLVVYGGVDIKTQTPHLKTGVEVLVAT 143 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI K L ++ ++ +VLDEAD MLD+GF D++ IL PK+R+ LMFSAT S Sbjct: 144 PGRLLDHIEQKTLQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPKQRQNLMFSATFSN 203 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA ++ + +A N + ++ + VA SD++ ++ +LR AK IVF Sbjct: 204 EIKKLADDFLTKPQLIEVARSNATNDNVTQKVYQVAQSDKEALLIQLLREADAKQVIVFT 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + SR ++ L A+ G+ +QQER AL + G IATDVAARG+D+ Sbjct: 264 KTKLTASRLSRSLVREGIAADAIHGDKNQQERIKALDAFKAGTVSALIATDVAARGLDIS 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 +L +VI+ E+ S PE+ +HR GRTGRAG G+++ + + ++ Sbjct: 324 ELPMVINYEIPSAPEDYVHRIGRTGRAGALGVAISFVSDDEEK 366 >gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402] gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7] gi|167702881|gb|EDS17460.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402] gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7] Length = 535 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 155/503 (30%), Positives = 255/503 (50%), Gaps = 14/503 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + +QE + L DV+ AQTG+GKT+AFG L S + S Sbjct: 17 KAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKITP-----SQR 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ ++PTRELA+Q+ E+E + G + GG + R+ R ++ G I+VGTP Sbjct: 72 KLPQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIKKGIDIIVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D +R L ++ +K VVLDEADEML++GF +DIE IL+ R+ ++FSAT+ Sbjct: 132 GRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDRQTILFSATMPAG 191 Query: 193 ITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+NY D V + S+ + + V DR A+ ++ + I+FC Sbjct: 192 IKKIAQNYMHDNFEHVAVLSKQTTATSVKQFYYEVKQKDRFEAMCRLIDVANVQTGIIFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ SV T+ + + + V A+ G+LSQ R N L+ + G IATDVAARGID+ Sbjct: 252 RTKRSVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFLIATDVAARGIDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 ++ VI+ EL + E+ +HR GRTGRA ++G + +I + ++ R S+ Sbjct: 312 NVTHVINYELPQDIESYVHRIGRTGRADKEGQAYSIITPREKGFLRQIERVTKSSITKAT 371 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431 P+++ I E ++ D I K L+ + DP +A A L Sbjct: 372 IPTLQEISEAKIGTLVSK--VEDQILAGNHKKFKQLVNEIDPTMLAD-----FTAALMYM 424 Query: 432 EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRS 491 + RD ++ S + G R N K + ++ GS + +A ++ Sbjct: 425 TFQEQLGYDYKRDTIQEASEGKRRERG-RGNNKDYTRIFITAGSMDRVKAPQIVNFFVSK 483 Query: 492 SGINRQSIGAIRVQPDLTFVEVS 514 +G+ ++ IG I ++ TFV+++ Sbjct: 484 AGVRKEDIGDIDIKRKFTFVDIN 506 >gi|79328737|ref|NP_001031943.1| emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding [Arabidopsis thaliana] gi|108861893|sp|Q8L7S8|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags: Precursor gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana] gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana] gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana] gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana] gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana] gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana] gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana] gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana] gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] Length = 748 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 131/390 (33%), Positives = 223/390 (57%), Gaps = 12/390 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++PQ + E+L +RG +L +Q A+L P L+ +D++ A+TG+GKT+AFG+ + L E Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167 Query: 66 NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 ++ P L +APTRELA QV +E++ + VC+ GGVS ++ Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSA 224 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G +VVGTPGR+ D I G+ L + ++ +VLDEAD+ML +GF + +E IL++ P KR Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238 + ++FSAT+ + LA+ Y + + +++ + + I A+ + + + ++ Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344 Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + Y IVF T+ + L+ + AL G++SQ +R L R G+ V Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFTV 403 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVA+RG+D+P+++LVIH EL ++PE +HRSGRTGRAG++G ++ + + +R Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVR 463 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387 L R+ + P+V + E A +++ Sbjct: 464 SLERDVGCHFEFISPPTVGDLLESSADQVV 493 >gi|30690260|ref|NP_680225.2| emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding [Arabidopsis thaliana] gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana] gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana] gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] Length = 747 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 131/390 (33%), Positives = 223/390 (57%), Gaps = 12/390 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++PQ + E+L +RG +L +Q A+L P L+ +D++ A+TG+GKT+AFG+ + L E Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167 Query: 66 NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 ++ P L +APTRELA QV +E++ + VC+ GGVS ++ Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSA 224 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G +VVGTPGR+ D I G+ L + ++ +VLDEAD+ML +GF + +E IL++ P KR Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238 + ++FSAT+ + LA+ Y + + +++ + + I A+ + + + ++ Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344 Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + Y IVF T+ + L+ + AL G++SQ +R L R G+ V Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFTV 403 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVA+RG+D+P+++LVIH EL ++PE +HRSGRTGRAG++G ++ + + +R Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVR 463 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387 L R+ + P+V + E A +++ Sbjct: 464 SLERDVGCHFEFISPPTVGDLLESSADQVV 493 >gi|331086825|ref|ZP_08335902.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409991|gb|EGG89426.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 529 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 147/517 (28%), Positives = 258/517 (49%), Gaps = 40/517 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ G+ + +Q + + KD++ AQTG+GKT AFG+ + + +N + Sbjct: 15 IQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPMLEKIDPKNKKLQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + + PTRELA+QV E+ L G+ V GG + ++ R L++G +++ Sbjct: 75 ------GIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLII 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+R K + + + V+LDEADEML++GFR+DIE IL+ P++R+ ++FSAT+ Sbjct: 129 GTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEGVPEERQTVLFSATM 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + K +QK+A + + + +I+ V +++ + +L + K +++ Sbjct: 189 PKAIMEITKKFQKNAELIKVTKKELTVPNIEQFYYEVKPKNKEEVLTRLLDIYTPKLSVI 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V L + L G++ Q +R +Q R G+ + +ATDVAARGID Sbjct: 249 FCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVATDVAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + ++E V + +L + E +HR GRTGRAGR G S + + + + R + Sbjct: 309 VDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKEIQRYCKTKIYA 368 Query: 370 EPAPSVEAIRERDAQRILQD----------PLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + PS+ + +L++ + +++I E+K+ D D +AA Sbjct: 369 QKVPSLNDVANTKIDNVLEEIEKMIEKEDLTMMINAI---EEKVNDSDYTAMD---MAAA 422 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 FL+++ +G + F G + G +++G KQKA Sbjct: 423 FLKLY----------------TGMKDENESEDEFDFGDTGAEE-PGMVRLFINIGKKQKA 465 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ L SG+ + IG I + TFVEV + Sbjct: 466 RPGDILGALAGESGMPGKLIGTIDMFDKYTFVEVPKE 502 >gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana] Length = 748 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 131/390 (33%), Positives = 223/390 (57%), Gaps = 12/390 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++PQ + E+L +RG +L +Q A+L P L+ +D++ A+TG+GKT+AFG+ + L E Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167 Query: 66 NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 ++ P L +APTRELA QV +E++ + VC+ GGVS ++ Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSA 224 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G +VVGTPGR+ D I G+ L + ++ +VLDEAD+ML +GF + +E IL++ P KR Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238 + ++FSAT+ + LA+ Y + + +++ + + I A+ + + + ++ Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344 Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + Y IVF T+ + L+ + AL G++SQ +R L R G+ V Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFTV 403 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVA+RG+D+P+++LVIH EL ++PE +HRSGRTGRAG++G ++ + + +R Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVR 463 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387 L R+ + P+V + E A +++ Sbjct: 464 SLERDVGCHFEFISPPTVGDLLESSADQVV 493 >gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a] gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a] Length = 486 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|329295922|ref|ZP_08253258.1| ATP-dependent RNA helicase DeaD [Plautia stali symbiont] Length = 617 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 180/586 (30%), Positives = 285/586 (48%), Gaps = 52/586 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E+L+ GYV + +Q + L +DVL AQTGSGKT AF L L N+ Sbjct: 17 ILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL------NNVDP 70 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ G+ V GG + R L+ G IVV Sbjct: 71 SVRAPQILVLAPTRELAVQVAEAMTEFSKHMRGINVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L+ +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSSLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + K + KD V + S DI ++ A + +A+V L AI+ Sbjct: 191 PEAIRRITKRFMKDPQEVRMQSSITTRPDIS-QSYWTAYGRKSDALVRFLEAEDFDAAII 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 250 FVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 310 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 369 Query: 370 EPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLR 422 P+ E + +R AQ + L+S D+ + LLAK PE+ +AA L+ Sbjct: 370 VELPNAELLSQRRLAQLAAKVQQQLESSDLDQYR---ALLAKMQPEEELDMETLAAALLK 426 Query: 423 I---HRAGLCAPEEITP------VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 + R + P+ P G DR R + R + + + V Sbjct: 427 MAQGERPLILLPDAPRPQRREFRDRDERGGDRPRRERR----------DVGEMQLYRIEV 476 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDK 529 G E R ++ + I+ + IG I++ + +E+ + + RT L+K Sbjct: 477 GRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGEVLQHFTRTRILNK 536 Query: 530 GIQLKYLGGEKP-----------DFRGYKSSGFKSKNSQDGATKRF 564 + ++ LG +P DF G + + N + GA +RF Sbjct: 537 PMNMQLLGDAQPHERTERRSGGRDFGGERRGNREGGNREGGAPRRF 582 >gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353] gi|224953734|gb|EEG34943.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353] Length = 529 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 158/520 (30%), Positives = 264/520 (50%), Gaps = 47/520 (9%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +A++ G+ ++ +Q + +L KDV+ AQTG+GKT AFG+ + Sbjct: 13 PEIL-KAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIPILQ------- 64 Query: 68 RFSPA-SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124 + P P A+ + PTRELA+QV E+ L AK + V + GG + ++ R L+ G Sbjct: 65 KVDPKLKKPQAIVLCPTRELAIQVADEIRKL-AKYMSSVKILPIYGGQEISKQIRSLKAG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I++GTPGR+ DH+R K + ++ VVLDEADEMLD+GFR+DIE IL+ P++R+ ++ Sbjct: 124 VQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILNGVPEERQTML 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LA+ YQ++ + + + +I V ++ + +L + Sbjct: 184 FSATMPKPIMELARAYQQNPEIIKVIRKELTVPNITQYYYEVRPKNKSEVLSRLLDIYDP 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K ++VFC+T+ V L + L G++ Q R + R G+ + +ATDVA Sbjct: 244 KLSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSGKTDILVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARGID+ D++ V + +L + E +HR GRTGRAGR GM+ FV+ + + + + + R Sbjct: 304 ARGIDVDDVDAVFNYDLPQDEEYYVHRIGRTGRAGRTGMAFSFVVGREVYKLKD-IRRYC 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHD--PEKIAAG 419 + +P PS+ + E ++I D D MV+ + + D +AA Sbjct: 363 KAKIKAQPIPSLNDVTETRVEKIFDRIDHYIEDQNLNKYIDMVEEFVNEKDYTAMDVAAA 422 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF------KGSSWFSLSV 473 FL EI + G+D G ++++F +G +++ Sbjct: 423 FL----------AEI--LGTADGKD-----------AGSNKEDFGDTGAEEGMVRLFINI 459 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 G KQ ++ + SGI+ +G I + TFVEV Sbjct: 460 GKKQGIRPGDILGAIAGESGISGNLVGTIDLYDKYTFVEV 499 >gi|325663268|ref|ZP_08151718.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470722|gb|EGC73952.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium 4_1_37FAA] Length = 529 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 147/514 (28%), Positives = 257/514 (50%), Gaps = 40/514 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ G+ + +Q + + KD++ AQTG+GKT AFG+ + + +N + Sbjct: 15 IQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPMLEKIDPKNKKLQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + + PTRELA+QV E+ L G+ V GG + ++ R L++G +++ Sbjct: 75 ------GIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLII 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+R K + + + V+LDEADEML++GFR+DIE IL+ P++R+ ++FSAT+ Sbjct: 129 GTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEGVPEERQTVLFSATM 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + K +QK+A + + + +I+ V +++ + +L + K +++ Sbjct: 189 PKAIMEITKKFQKNAEVIKVTKKELTVPNIEQFYYEVKPKNKEEVLTRLLDIYTPKLSVI 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V L + L G++ Q +R +Q R G+ + +ATDVAARGID Sbjct: 249 FCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVATDVAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + ++E V + +L + E +HR GRTGRAGR G S + + + + R + Sbjct: 309 VDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKEIQRYCKTKIYA 368 Query: 370 EPAPSVEAIRERDAQRILQD----------PLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + PS+ + +L++ + +++I E+K+ D D +AA Sbjct: 369 QKVPSLNDVANTKIDNVLEEIEKMIEKEDLTMMINAI---EEKVNDSDYTAMD---MAAA 422 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 FL+++ +G + F G + G +++G KQKA Sbjct: 423 FLKLY----------------TGMKDENESEDEFDFGDTGAEE-PGMVRLFINIGKKQKA 465 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++ L SG+ + IG I + TFVEV Sbjct: 466 RPGDILGALAGESGMPGKLIGTIDMFDKYTFVEV 499 >gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] Length = 508 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 134/340 (39%), Positives = 197/340 (57%), Gaps = 4/340 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69 I +A+ E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + Sbjct: 53 ILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPLASTSA 112 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 113 SPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQTAELRRGVEIL 172 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K +++ ++ +VLDEAD MLD+GF D++ IL+ P +R+ L+FSAT Sbjct: 173 IATPGRLLDHVQQKSTSLAQVQMLVLDEADRMLDMGFLPDLQRILNLLPSQRQTLLFSAT 232 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y +D V + +A N S++ VA D+ A+V ++R K I Sbjct: 233 FSAEIKKLASTYLRDPVTIEVARSNSTASNVRQIVFEVAEPDKQAAVVQLIRQRELKQVI 292 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR K L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 293 VFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 352 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 D+ +L VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 353 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 392 >gi|224023569|ref|ZP_03641935.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM 18228] gi|224016791|gb|EEF74803.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM 18228] Length = 637 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 172/540 (31%), Positives = 276/540 (51%), Gaps = 46/540 (8%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFG 55 MK FE + P+ I +A+ E GY N VQE ++ P L DV+ AQTG+GKT AFG Sbjct: 1 MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAFG 58 Query: 56 LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSV 114 L L + P AL + PTREL +Q+ +L ++ T + + GG S+ Sbjct: 59 LPLIQKIDVSR------RVPQALILCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + L+ G HI+V TPGRL D + K + + VV+DEADEML++GF D I IL+ Sbjct: 113 ESQIKSLKAGVHIIVATPGRLIDLMERKVARLDTVADVVMDEADEMLNMGFTDSINAILE 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R LMFSAT+SP I +AK Y DA + I ++N ++ + A V D+ A Sbjct: 173 KVPEERNTLMFSATMSPEIARIAKTYLHDAKEITIGTKNEGSKNVHHIAYTVHAKDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + ++ ++ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRVVDFYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQCH 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQN 351 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G+S+ +I + Sbjct: 293 LQLLVATDVAARGLDVNDLTHVINYGLPDDTESYTHRSGRTGRAGKTGVSIAIINLREKG 352 Query: 352 MQRRAERLFREA-NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--- 407 R ER+ ++ ++ + P+ + I E+ +++ D ++ ++ DE+++ L Sbjct: 353 KMREIERIIKKKFDLGTL----PTGKEICEQQLIKLIDD---IEKVKVDEEEIETFLPGI 405 Query: 408 ------LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459 L+K D K ++ F R A E P G ++ R+ + K G Sbjct: 406 YRKLEWLSKEDLIKRVVSMEFNRFLDYYKNAAEIEQP----KGNEK-RESQKERKDHGSD 460 Query: 460 RDNF-----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 R+ KG + L++G A ++ ++ R+ R IG I + + +F E++ Sbjct: 461 REKISRKAEKGYTRLFLNLGKTDGFYANQIIELINRNLKKERIEIGRIDLMQNFSFFEIA 520 >gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 473 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 135/350 (38%), Positives = 204/350 (58%), Gaps = 6/350 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L D++ +AQTG+GKT AF L + +L ++ Sbjct: 39 IQKAVAEQGYSIPTPIQAQSIPHVLAGSDLMGAAQTGTGKTAAFVLPIIQQILRHASNSA 98 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELAVQV T + AV GGV + + L+NG I+ Sbjct: 99 SPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQVAILRNGVEIL 158 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DHI K N+S ++ +VLDEAD MLD+GF D++ I+D P +R+ L+FSAT Sbjct: 159 IATPGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIIDLIPAQRQTLLFSAT 218 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL----RYHGA 244 SP I LA++Y + V V +A +N + +V+ D+ AIV +L R + Sbjct: 219 FSPEIKKLAQSYLRTPVTVEVARQNAAADTVKQVVHMVSSGDKQRAIVKVLEARTRLGLS 278 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F ++R ++ + L + A+ G+ SQ ER+ L + G +ATDVA Sbjct: 279 RQCIIFTNSRLGCAKLARALERDGIKAGAIHGDKSQGERTLTLDAFKSGAIEALVATDVA 338 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ARG+D+PD+ VI+ EL N E+ +HR GRTGRAG KG ++ ++ + +R Sbjct: 339 ARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDASEKR 388 >gi|15602977|ref|NP_246049.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70] gi|12721456|gb|AAK03196.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70] Length = 610 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 171/554 (30%), Positives = 280/554 (50%), Gaps = 35/554 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + A+S+ G+ + +Q++ + L DVL AQTGSGKT AF L L LA+ Sbjct: 13 LPEFLLNAVSDLGFETPSPIQQSCIPNLLNGHDVLGMAQTGSGKTAAFSLPL----LAQI 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D P L +APTRELA+QV E YAK +V + GG + R L+ G Sbjct: 69 D--LDKKYPQMLVMAPTRELAIQVADACEHFCKYAKNTNIVTL-YGGQRYDIQLRALRQG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHIR L++S+L+ +VLDEADEML +GF DD+E ++ P++ + + Sbjct: 126 AQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEQHQTAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I + K + KD + I S + DI V +++A++ L Sbjct: 186 FSATMPDPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFLEVEKF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ T++L +H F+ AL+G+++QQ R L +R+G + +ATDVA Sbjct: 246 DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361 ARG+D+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E+L + Sbjct: 306 ARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRNIEQLTK 365 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + V ++A R + + L + + D+ A D E IAA L Sbjct: 366 KPITEVEVPNHEVLQACRREKFKAKITVQLEHHDLGLYRSLLEDMFTADQDQEDIAAAML 425 Query: 422 RIHRAGLCAPEEITPVSLVSGRD-------------RFRDDSRAFKVGGGSRDNFKGSSW 468 + + + I P + R + A + G G+ + Sbjct: 426 MLLQG---KQKLILPADPIIDRKTSRGDRGERRERGGRENPRSAERRGYGTP---QAMDL 479 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524 + + VG AE R ++ + IN + IG I++ D T +E+ + + + +T Sbjct: 480 YRIEVGRLDGAEVRHIVGAIANEGDINSRYIGHIKLYDDYTTIELPQGMPKELLGVFAKT 539 Query: 525 VKLDKGIQLKYLGG 538 ++K +Q+ ++G Sbjct: 540 RVMNKQMQMSFVGA 553 >gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] Length = 510 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 132/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E GY + T +Q + L +DV+ +AQTG+GKT +F L + LL + + Sbjct: 44 ILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 103 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + AV GGV ++ + L+ G I+ Sbjct: 104 SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 163 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 164 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y ++ + +A N +++ VA D+ A+V ++R G K I Sbjct: 224 FSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVKLIRERGLKQVI 283 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 284 VFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVEALVATDVAARGL 343 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 344 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 390 >gi|170760570|ref|YP_001788120.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str. Loch Maree] gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A3 str. Loch Maree] Length = 524 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 159/520 (30%), Positives = 271/520 (52%), Gaps = 44/520 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ G+ +++QE + L DV+ AQTG+GKT+AFG + S+L + Sbjct: 10 NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISSL-CD 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 N++ AL + PTRELA+Q+ EL+ L Y+KT V+ GG S+ R+ +D+++ Sbjct: 69 NEK---KKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGR+ DHI + L + + ++LDEADEML++GF +DIE I++S+P++++ + Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTPEEKQTM 183 Query: 184 MFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ AI LA NY K+ V + I ++ I V D+ AI I+ Sbjct: 184 LFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSE 243 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++AI+FC T+ V + + + V + G++SQ +R N L+ + +ATD Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 VAARGID+ ++ VI+ ++ + E+ +HR GRTGRA ++G + V P+ + R+ ER+ Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415 + + + P++E I E+ +L D I+ ++ + MV L D + Sbjct: 364 TKS---KITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSQ 418 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 ++A + + L S F + + R LSVG Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 K + L+ + + + IG I + TF++VS+ Sbjct: 456 KDSINVKSLLTFIQDEASVRNHEIGDIDILDKFTFMDVSS 495 >gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH] gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4] gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] Length = 481 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 200/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Carnobacterium sp. AT7] gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Carnobacterium sp. AT7] Length = 527 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 151/423 (35%), Positives = 227/423 (53%), Gaps = 13/423 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L KDV+ AQTG+GKT AFGL + + N L Sbjct: 20 GFEEATPIQGQTIPLALEGKDVIGQAQTGTGKTAAFGLPMLQKIDVNNRNVQ------GL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELA+Q EL L V V V GG + R+ R L++ HIVVGTPGRL DH Sbjct: 74 VIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIRALKDAPHIVVGTPGRLLDH 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + H++ +VLDEADEML++GF DDIE I+ P +R+ L+FSAT+ PAI + Sbjct: 134 IKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQTLLFSATMPPAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V I + S I+ V ++ + + + + I+F T+ V Sbjct: 194 RFMKEPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFDVQTPELTIIFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L ++ + G+LSQQ+R + L+ + G+ V +ATDVAARG+D+ + V + Sbjct: 254 ELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWEPAPSV 375 ++ +PE+ +HR GRTGRAG++G+SV F+ P M R E L ++A + P + Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVIEDLTKKAMTPL--RPPTNA 371 Query: 376 EAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFLR-IHRAGLCAPEE 433 EA + I + +D+ D +K LL + E +AA FL+ + + P + Sbjct: 372 EAFEGQIKASIDEVGSIVDANGLDRYEKAAAQLLETYTAEDLAAAFLKSVTKDADEVPVK 431 Query: 434 ITP 436 ITP Sbjct: 432 ITP 434 >gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] Length = 571 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 132/344 (38%), Positives = 199/344 (57%), Gaps = 2/344 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72 A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N SPA Sbjct: 115 AIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSASPA 174 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I++ T Sbjct: 175 RHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIAT 234 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT SP Sbjct: 235 PGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSP 294 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA Y ++ + +A N S + VA D+ A+V ++R K IVFC Sbjct: 295 EIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFC 354 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+D+ Sbjct: 355 NSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIA 414 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 415 ELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 458 >gi|296159168|ref|ZP_06841995.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] gi|295890729|gb|EFG70520.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] Length = 491 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E GY T +QE + L +D++ +AQTG+GKT +F L + LL + + Sbjct: 22 ILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + AV GGV ++ + L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y +D + +A N +++ VA D+ A+V ++R G K I Sbjct: 202 FSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEGDKTGAVVQLIRERGLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARSLERDGVIATAIHGDRSQNERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei B7210] Length = 399 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|295101481|emb|CBK99026.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii L2-6] Length = 395 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 133/356 (37%), Positives = 205/356 (57%), Gaps = 11/356 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I +A+ G+ +T VQE + L +DV+ A TG+GKT AFG+ +A + Sbjct: 10 EAIHKAVERMGFAEMTEVQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVA-------EH 62 Query: 69 FSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 PA AP A+ +APTRELA Q+ EL L V VC+ GG ++ ++ + L G Sbjct: 63 IDPALKAPQAVILAPTRELAQQIAEELTGLTYFMPEVQVVCVYGGANMEKQAKRLAEGCQ 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL DH + +++ H+ VVLDEADEML++GF D++ I+ ++ + MFS Sbjct: 123 IVVATPGRLMDHYKHHNIDLDHVTQVVLDEADEMLNMGFYKDVKHIIGLMKARKSLSMFS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATIS + + YQKDA + + + I + + ++ + + I+ G K Sbjct: 183 ATISREVMDIGWMYQKDAEEITVQPKEESQPKITQYMLETSGRNKLSDLAQIIIGEGYKR 242 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VFC T+ + + LA F V L G+LSQ ER+ +Q RDG+ V +ATDVAAR Sbjct: 243 VMVFCDTKFNTAALANQLARLGFSVDCLHGDLSQNERNRIMQNFRDGKLNVLVATDVAAR 302 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361 GID+ D++ VI+ ++ + E+ HR GRTGRA ++G+S +F +P+ ++R + L R Sbjct: 303 GIDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEE-KKRVQELLR 357 >gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421] gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421] Length = 437 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 150/421 (35%), Positives = 234/421 (55%), Gaps = 20/421 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL E G+ T +Q + L +D+L AQTG+GKT AFGL L DR P Sbjct: 16 KALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPLV-------DRSDPQ 68 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A + AL +APTRELAVQV + +GV V GG + R+ R L+ GA IVVGT Sbjct: 69 DARVQALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRLRAGAQIVVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D +R L++S L+ +VLDEAD+MLD+GF ++++ ILD++P +R+++ FSAT+ Sbjct: 129 PGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLVFFSATLPA 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 +I LA + + + + + +E R I R V +R A+ +L +A++F Sbjct: 189 SIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAEDPASALIFT 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L + + AL G+L+Q R L R + V +ATDVAARG+D+ Sbjct: 249 RTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDVAARGLDIA 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DL VI+ ++ + E+ +HR GRTGRAGR G+++ F +P + + R + R ++V Sbjct: 309 DLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTD-RYRLRLIERATGSTLVPA 367 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPEKIAAGFLR 422 PS I+ R +R+++ +Q DE +++V L + D IAA FL+ Sbjct: 368 KIPSAGEIQVRRTERLVEQ--LRRQLQADESDPSLVLYREVVGQLREEFDLGDIAATFLK 425 Query: 423 I 423 + Sbjct: 426 L 426 >gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10] gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum H10] Length = 565 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 166/557 (29%), Positives = 279/557 (50%), Gaps = 50/557 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + G+ T +Q + L D++ AQTG+GKT AFG+ + + D Sbjct: 18 AIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEKIDPQIDSIQ--- 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L ++PTRELA+Q EL L K G+ + GG + R+ L+ I++GTP Sbjct: 75 ---VLVLSPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMALKKRPQIIIGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R + + + LK +VLDEADEML++GFR+DI+ IL+ P+ R+ ++FSAT+ Sbjct: 132 GRVMDHMRRRTIKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQTILFSATMPKE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L K YQK+ V + IA + I+ + V S + + ++ + K ++VFC+ Sbjct: 192 ILELTKKYQKNPVHIKIAHKELTVPSIEQYYLEVKESAKLEVLSRLIDTNDIKLSLVFCN 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V T L F AL G++ Q+ R + + R G + IATDVAARGID+ D Sbjct: 252 TKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNFDILIATDVAARGIDVDD 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 +E V + +L ++ E +HR GRTGRAGR G + I + + R +++ Sbjct: 312 VEAVFNYDLPNDDEYYVHRIGRTGRAGRTGKAFTFIYGREMYKLRDIQRYTKSTIIPMKP 371 Query: 373 PSVEAIRERDAQRILQD-----------------PLFLDSIQGDEKKMVDVLLAKHDPEK 415 PS+ + E+ IL+ F+D+I + ++ D ++ D Sbjct: 372 PSLNEVEEKKMSNILKALKENLKDESVSKFASHIERFIDTINNESEEHDDNFVSSLD--- 428 Query: 416 IAAGFLRIH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 IA L+++ ++G S+V+ D + G S+D + +++ Sbjct: 429 IAGALLKMYGEQSGNLP-------SVVNEIDNAVE-------PGSSKDMVR----LFINI 470 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533 GS K + + ++ L S+G+ + +GAI + +FVEV + + +++K + I+ Sbjct: 471 GSDSKIQPKHIIESLVASTGLPGKLVGAIDIFDRYSFVEVPKEFAPEVLKSMK-NYTIKG 529 Query: 534 KYLGGEKPDFRGYKSSG 550 K + EK + R K SG Sbjct: 530 KRINIEKSNAR--KKSG 544 >gi|329956340|ref|ZP_08296937.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056] gi|328524237|gb|EGF51307.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056] Length = 645 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 146/413 (35%), Positives = 225/413 (54%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLIQQINVNN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLRVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S ++ VV+DEADEML++GF D I IL Sbjct: 113 ESQIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++K Y +A + I +N +++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKKYLHNAKEITIGRKNEGTNNVKHVVFTVHAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + AL GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADALHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + P+ + I E+ +++ + L+ ++ +E ++ D + Sbjct: 353 KMREIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEICDFM 402 >gi|238028205|ref|YP_002912436.1| putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1] gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1] Length = 480 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 202/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++++GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKARQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y + + +A N +++ +A D+ A+V ++R K I Sbjct: 202 FSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIAEGDKQAAVVKLIRDRALKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR ++L A+ G+ SQ ER AL+ + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRGEVEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L + E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] Length = 669 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 132/357 (36%), Positives = 211/357 (59%), Gaps = 10/357 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + EA+S+ G+ + +QE + + +DV+ AQTG+GKT AF L + S + E Sbjct: 70 LPDDVQEAVSKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDTE- 128 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 A P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 129 -----ARYPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA 183 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +F Sbjct: 184 QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALF 243 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I L+K Y + V + SE R + +I R +L + +A IL Sbjct: 244 SATMPNSIRRLSKQYLNNPAEVTVKSERRTNDNITQRFLLTPHRHKMDAFTRILEVIDYD 303 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ + L E + A++G+++QQ+R + ++DGR + +ATDVAA Sbjct: 304 AIIVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAA 363 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERL 359 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ FV P+ M R ER+ Sbjct: 364 RGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERV 420 >gi|298504304|gb|ADI83027.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400] Length = 460 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 138/347 (39%), Positives = 204/347 (58%), Gaps = 10/347 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q L L KDV+ A+TGSGKT AFG+ L S L A + R Sbjct: 19 LASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDALSFRVQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QVG+EL L + ++ +C GGV + L++GAH+V+GTP Sbjct: 75 --ALVLCPTRELADQVGKELRRLARFTDNIKILTIC-GGVPFGPQLGSLEHGAHVVIGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R L++S L+ +VLDEAD MLD+GF+DDI ++ ++P KR+ L+FSAT + Sbjct: 132 GRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLFSATYPDS 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q++ V V++ E I+ V R A+ IL ++ ++A++FC+ Sbjct: 192 IAAMSAGVQREPVEVSV-DEVHGEGAIEQVFYEVDSGQRIEAVERILGHYRPESALIFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ LA + +A+ G+L Q+ER L + A V +ATDVAARG+D+ + Sbjct: 251 TKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAARGLDIKE 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 L VI+ EL+ NPE HR GRTGRAG +G++V ++ R E + Sbjct: 311 LSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIETI 357 >gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z] gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum Z] Length = 656 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 165/534 (30%), Positives = 266/534 (49%), Gaps = 44/534 (8%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ T +Q + L KDV AQTG+GKT AFG+ + L +N Sbjct: 18 QAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIERLDPDNKNVQ-- 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL ++PTRELA+Q E L K G+ V GG + R+ R L+ +V+GT Sbjct: 76 ----ALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALKGTVQVVIGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI+ L++ + +LDEAD+MLD+GFR+DIE I +PK R+ ++FSAT+ Sbjct: 132 PGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSATMPQ 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + +Q+D V I + I+ + V D+ A+ L + + A+VFC Sbjct: 192 PILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNNPELALVFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ +V + + V AL G++ QQ+R + R G V IATDVAARGID+ Sbjct: 252 NTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAARGIDVD 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 D+++V + ++ + E +HR GRT RAGR G SV FV P+ + + + + R A + + Sbjct: 312 DVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRD-IQRYAKIQIAKT 370 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQ-----GDEK---KMVDVLLAKH---DPE----- 414 P P+++ + E Q +FLD ++ G+ + +V+ LL D E Sbjct: 371 PLPTLDDVAEMKQQ------IFLDKVRDIMAAGNLELYLPLVEQLLETETDVDSESTSEI 424 Query: 415 ---KIAAGFLRIHR---AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-GSS 467 ++AA L++H EEI P+ S F G + G Sbjct: 425 TSIQVAAALLKMHLDSGKNAAQSEEIKPLQPSPS------SSETFTPGTVENSGAEPGMV 478 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 F +S+G Q+ + ++ I SIG I + + ++V+V + +L+ Sbjct: 479 RFRISLGKNQQIRPKDIVGAFAGECDIPGSSIGRIDLYNNYSYVDVPLEHANLV 532 >gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei DM98] Length = 409 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215] Length = 414 Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 112] Length = 400 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|254482117|ref|ZP_05095359.1| DbpA RNA binding domain family protein [marine gamma proteobacterium HTCC2148] gi|214037807|gb|EEB78472.1| DbpA RNA binding domain family protein [marine gamma proteobacterium HTCC2148] Length = 459 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 212/368 (57%), Gaps = 16/368 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77 GY ++T +Q A L + KD++ A+TGSGKT AF L L D+ +P A Sbjct: 23 GYASMTGIQAASLPLAFKGKDLIAQAKTGSGKTAAFSLPLL-------DKLNPRDFGTQA 75 Query: 78 LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 L + PTRELA QV E+ L Y + VV +C GG S+ + L++GAHIVVGTPGR+ Sbjct: 76 LVLCPTRELATQVSGEIRRLARYRQNIKVVTLC-GGQSIGPQIGSLEHGAHIVVGTPGRI 134 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 DH+R K LN++ + +VLDEAD ML++GF +DI I++ +P R+ L+FSAT I Sbjct: 135 SDHLRKKTLNLTRVDTLVLDEADRMLEMGFVEDISSIIEQTPAARQTLLFSATYPDDIEA 194 Query: 196 LAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+ +QK R+++ + H+D ID + + S R + +V +L + + A+VFC+T Sbjct: 195 LSARFQKQPERISVET---MHNDQQIDQQFFVCQKSARLDGLVTLLNHFAPQTAVVFCNT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T L E + +AL G++ Q++R L R V +ATDVAARG+D+ DL Sbjct: 252 KQLVRDVTAHLDESGIRALALHGDMEQRDRDQVLIQFRQQSCSVLVATDVAARGLDIDDL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 +V++ EL E +HR GRTGRAG+ G+++ + + Q + E++ + +P Sbjct: 312 PVVVNFELPRETEVYVHRVGRTGRAGKAGLALSLFADSEQYKLEKIRQLLQQEPETKPID 371 Query: 374 SVEAIRER 381 S+ ER Sbjct: 372 SISVRGER 379 >gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9] gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9] gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9] Length = 478 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 132/334 (39%), Positives = 194/334 (58%), Gaps = 2/334 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 D+ +L VI+ +L N E+ +HR GRTGRAG G Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASG 355 >gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 533 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 172/518 (33%), Positives = 265/518 (51%), Gaps = 37/518 (7%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ A+ + G+ + +Q + L +D++ AQTG+GKT AF + L L A Sbjct: 17 PEIL-RAVDDMGFEEPSPIQLQTIPQLLDGRDLVGQAQTGTGKTAAFAIPLLMRLQARR- 74 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P L + PTRELA+QV E + T V GG S+ R+ + LQ G + Sbjct: 75 -----GWPQVLVMTPTRELAIQVAEEFARVGRYTNTRVLPVYGGQSIGRQIKTLQRGVDV 129 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DH+ K L + L+AVVLDEADEMLD+GF DDIE IL+++P R+ L+FSA Sbjct: 130 VVGTPGRVLDHLNRKTLRLEQLQAVVLDEADEMLDMGFIDDIESILNATPPSRQTLLFSA 189 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 TI I LA+ Y + V V+I E DI + D A+ IL + A Sbjct: 190 TIPGPIARLAEKYMRTPVHVSINPEYVAAPDIWQVYYELRNIDHLEALCRILDAEAVERA 249 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V + L + + G+L Q +R+ + R+G + +ATDVAARG Sbjct: 250 IIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLVATDVAARG 309 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREAN 364 ID+ ++ VI+ + +PE+ +HR GRTGRAGR G ++ V P+ + R +RL + Sbjct: 310 IDVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKELPLLRTIQRLVK--- 366 Query: 365 VSVVWEPAPSVEAIRERDA----QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 V + P PS+ + +R QR+L+ L ++ + +V L ++DP ++AA Sbjct: 367 VRIERHPIPSLADVVDRRMEIWRQRLLE-ALGTGNLT-PYRTLVQELSGEYDPMEVAAAA 424 Query: 421 LRIHR--AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 L++ G P+ P RA K GG + +G F +++G Q Sbjct: 425 LKLLARDQGTAGPDVRPP--------------RAEKFGGTGAE--EGMVRFFMNIGRNQG 468 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ + + I IGAI + + TF+EV + Sbjct: 469 VTPADIVRGVAEQARIPGGVIGAIDIYDNFTFLEVPEE 506 >gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 425 Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 148/416 (35%), Positives = 230/416 (55%), Gaps = 17/416 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + + ++L E G+ + T +Q+ + L D++ AQTG+GKT AFG+ + + Sbjct: 15 FNQLDLKVQKSLEEMGFESPTPIQKEAIPLALEGYDIVGQAQTGTGKTAAFGIPIIENI- 73 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 N R A + + PTRELA+QV EL + GV GGVS+ R+ L+ Sbjct: 74 --NSRERGVKA---IVLTPTRELAIQVAHELSLIGKNKGVSAYPIYGGVSIERQANILKR 128 Query: 124 G-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G IVVGTPGR+ D I L + ++ VLDEAD+MLD+GF +DIE IL +P++++ Sbjct: 129 GRNQIVVGTPGRVKDLISRGLLKLDRVRFAVLDEADQMLDMGFIEDIEEILSKTPREKQT 188 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ I L NY K + +N + R + V D+ A+ +L+ H Sbjct: 189 LLFSATMPYEIRKLIDNYLKSGYKTIKVGKNLITPKVHQRIIFVKSEDKLKALEKLLKEH 248 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + IVF T+ + K L + A+ G+LSQ++R N ++ ++G+ + +ATD Sbjct: 249 QGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGKVKTLVATD 308 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LVI+ EL NPE+ +HR GRTGRAGR+G ++ ++ N +RR R+ Sbjct: 309 VAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGTAISLVADNEKRRIYRIKGL 368 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKI 416 ++ +P E + D + + QD L D + EK K+ LL + DPE++ Sbjct: 369 KHI----KP----EKFKANDLRDLKQDLLSADVGKVSEKIRKVAKELLRERDPEEV 416 >gi|39995299|ref|NP_951250.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA] gi|39982061|gb|AAR33523.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA] Length = 460 Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 136/336 (40%), Positives = 201/336 (59%), Gaps = 10/336 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q L L KDV+ A+TGSGKT AFG+ L S L A + R Sbjct: 19 LASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDALSFRVQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QVG+EL L + ++ +C GGV + L++GAH+V+GTP Sbjct: 75 --ALVLCPTRELADQVGKELRRLARFTDNIKILTIC-GGVPFGPQLGSLEHGAHVVIGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R L++S L+ +VLDEAD MLD+GF+DDI ++ ++P KR+ L+FSAT + Sbjct: 132 GRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLFSATYPDS 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q++ V V++ E I+ V R A+ IL ++ ++A++FC+ Sbjct: 192 IAAMSAGVQREPVEVSV-DEVHGEGAIEQVFYEVDSGQRIEAVERILGHYRPESALIFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ LA + +A+ G+L Q+ER L + A V +ATDVAARG+D+ + Sbjct: 251 TKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAARGLDIKE 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L VI+ EL+ NPE HR GRTGRAG +G++V ++ Sbjct: 311 LSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLV 346 >gi|319900501|ref|YP_004160229.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] gi|319415532|gb|ADV42643.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] Length = 655 Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 138/353 (39%), Positives = 198/353 (56%), Gaps = 12/353 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE + I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSAEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115 L + P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 61 LIQQINV------SKRIPQSLILCPTRELCLQIAGDLN-DYSKYINGLRVLPVYGGSSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ G HI+V TPGRL D + K +++S ++ VV+DEADEML++GF D I IL Sbjct: 114 SQIRALKQGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILAD 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P++R L+FSAT+SP I ++KNY DA + I +N +++ + V D+ A+ Sbjct: 174 VPQERNTLLFSATMSPEIARISKNYLHDAKEITIGRKNESTNNVKHVVFCVHAKDKYAAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 234 KRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNL 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAII 346 >gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 14] Length = 409 Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQAIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 91] Length = 411 Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N S + VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179] gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein [Helicobacter felis ATCC 49179] Length = 469 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 213/370 (57%), Gaps = 9/370 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++E G+V + +QE + L+ +DV+ AQTG+GKT AF L + L +NDR Sbjct: 29 ILKSIAEAGFVQPSPIQEKAIPVILQGRDVIAQAQTGTGKTAAFALPIIHNL--KNDR-- 84 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129 + AL I PTRELA+Q+ E+ + K+ +CI GG S+ ++ L+ +++ Sbjct: 85 ---SVEALIITPTRELAMQISDEI-FRLGKSSRTRTICIYGGQSIRKQCELLEKRPQVMI 140 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ K L + K VVLDE+DEMLD+GF DDIE I D P ++L+FSAT+ Sbjct: 141 ATPGRLLDHLKNKRLKHFNPKVVVLDESDEMLDMGFLDDIEEIFDYLPNDAQILLFSATM 200 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I LA +D ++IA N ++DI R ++ +R+ AI+ +L +I+ Sbjct: 201 PPPIRDLANKILQDPASIHIAPANITNADISQRFYVINEHERNEAIMRLLDKENHTKSII 260 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F + V + L E ++ L G++ Q+ R +++ + RA V +ATDVA+RG+D Sbjct: 261 FMRMKREVDELHRFLVERGYKTTPLHGDMEQRARQESIKAFKSKRADVLVATDVASRGLD 320 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + D+ V + L N E+ +HR GRTGRAG+KG+++ ++ + +R+ +E + ++ Sbjct: 321 ISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGIAITLVTPLEYKELQRMQKEIDSTIEL 380 Query: 370 EPAPSVEAIR 379 P + R Sbjct: 381 YEIPDMNEDR 390 >gi|262196937|ref|YP_003268146.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365] gi|262080284|gb|ACY16253.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM 14365] Length = 908 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 126/343 (36%), Positives = 203/343 (59%), Gaps = 9/343 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL E GY VQ A+ P + +DV+V ++TGSGKT FG+ + + A Sbjct: 71 PELL-QALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVVQHIDA--- 126 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + AL +APTRELA+QV RE+ L G+ + GG + + L GA + Sbjct: 127 ---ASKGAQALILAPTRELALQVSREIAQLAKPKGLHIEPIYGGAPIKPQMDALAAGAQV 183 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMF 185 V GTPGR+ DH+R K L+ +++ ++LDE DEML +GF+++IE I++ P K R+ ++F Sbjct: 184 VSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQTVLF 243 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SATI I +A+ + D +++++ N DID+ +V+ R ++ +LR Sbjct: 244 SATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLRAESPD 303 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AI+FC+TR + K L + A+S +L+Q++R ++ MRD +ATDVAA Sbjct: 304 SAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVATDVAA 363 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ DL VI+ +PE +HR+GRTGRAG+ G+++ ++ Sbjct: 364 RGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLV 406 >gi|254490715|ref|ZP_05103899.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010] gi|224464070|gb|EEF80335.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010] Length = 605 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 171/542 (31%), Positives = 274/542 (50%), Gaps = 47/542 (8%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I I +A+ E GY + +Q + P L +D+L AQTG+GKT AF L L S L N Sbjct: 17 IAPAIVKAIQEAGYETPSPIQAQSITPLLEGRDLLGQAQTGTGKTAAFSLPLLSRL---N 73 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 DR P L + PTRELA+QV ++ + K V+ + GG S+ + R LQ Sbjct: 74 DR---QKTPQMLVLTPTRELAIQVAEAIQGYGRHIKNFHVLPIY-GGQSMGIQLRQLQRN 129 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 ++VGTPGR+ DHIR L + +L+++VLDEADEML +GF DD+E IL +PK R++ + Sbjct: 130 PQVIVGTPGRILDHIRRGKLALENLQSLVLDEADEMLRMGFIDDVETILQETPKDRQVAL 189 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A+ Y + V V+I S+ I+ R V + +A+ IL Sbjct: 190 FSATMPKPIHRVAQRYLNNPVEVHIKSKTSTVDTINQRYWQVTGLHKLDALTRILEVEEF 249 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F T+ S + L + L+G+++Q R ++ M+ G+ + +ATDVA Sbjct: 250 DGMIIFVRTKNSTVDLAEKLEARGYASSPLNGDMNQALREKTIEKMKAGKIDILVATDVA 309 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ + V++ ++ + E+ +HR GRTGRAGRKG ++ + +R + + Sbjct: 310 ARGLDIQRMSHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLGAIEKATK 369 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKH--DPEKIAA 418 ++ PS E I +R Q ++I+ + +K++ +H DP ++AA Sbjct: 370 QTITRMQLPSSEDIADRRVMSFKQQ--MTETIESQDLAFFEKLITSYQEEHNADPVEVAA 427 Query: 419 G---FLRIHRAGLCAPEEITPVSLVSGRDRFRD----DSRAFKVGGGS------------ 459 ++ HR + PVS VS R + R+ DSR S Sbjct: 428 ALAFLVQKHRP-------LKPVSHVSERKQPRERADRDSRQTNREPRSERPERAPRAPRT 480 Query: 460 RDNFK---GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 R K G + + VG++ E + L+ + +G+ Q IG I + D +FV++ D Sbjct: 481 RAEHKPEEGMKTYRVEVGAEHNVEPKHLVGAIANEAGLESQLIGRISIMDDHSFVDL-PD 539 Query: 517 GV 518 G+ Sbjct: 540 GM 541 >gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567] gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567] Length = 719 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 181/577 (31%), Positives = 285/577 (49%), Gaps = 44/577 (7%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ AL E GY + +QE + P L DV+ AQTG+GKT AF L S + D Sbjct: 137 PRVLS-ALEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTAAFALPALSRMAELAD 195 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + L +APTRELA+QV + V GG + L+ GA Sbjct: 196 INGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQ 255 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L++S+L+ +VLDEADEML +GF +D+E IL+ +P +++ +FS Sbjct: 256 VVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQVALFS 315 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ +I +A+ Y D V + ++ ++I R + V S + +A+ +L Sbjct: 316 ATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVENYDG 375 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ L FQ A++G++ QQ R + +RDGR + +ATDVAAR Sbjct: 376 IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 435 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREA 363 G+D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ FV P+ M R+ E+ R+ Sbjct: 436 GLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEKATRQK 495 Query: 364 NVSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--EK 415 EP P+ + + QR + ++I+ ++ +K+++ +HD E Sbjct: 496 -----VEPMHMPTAQDVNSSRKQRFAEQ--ITETIETEDLNFFRKIIEDYENEHDTTAED 548 Query: 416 IAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471 IAA I + G L ++I S D R K G D +G + L Sbjct: 549 IAAALAVIAQQGRAFFLDENDDIARKSRAFADDTKDRGKRGPKKGRNHSD--EGMVNYKL 606 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRT--- 524 +VG + +A ++ L GI IG+I ++ T V + D D LR T Sbjct: 607 NVGRASRVKASAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPKGFFDRLRDTKIA 666 Query: 525 -----VKLDKGIQLKYLGGEKPDFR--GYKSSGFKSK 554 ++ D+G Q GG FR + GF+S+ Sbjct: 667 GEFINIRKDRGPQ----GGGGRSFRRNDRRDGGFRSR 699 >gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis] Length = 802 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 134/390 (34%), Positives = 217/390 (55%), Gaps = 12/390 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ Q + EAL+ RG +L +Q A+L P L +D++ A+TG+GKT+AFG+ + L + Sbjct: 150 NLSQELVEALANRGITHLFPIQRAVLVPALEGRDLIGRAKTGTGKTLAFGIPIIERLTKD 209 Query: 66 NDRF----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 N P L +APTRELA QV E E+ + + A GGVS ++ L Sbjct: 210 NKENKLLRQSRRLPRVLVLAPTRELAKQV--EKEFKESAPFLSTACIYGGVSYVSQQNAL 267 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G +VVGTPGR+ D + K L ++ ++ +VLDEAD+ML +GF +D+E ILD+ P +R+ Sbjct: 268 ARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDEADQMLAVGFEEDVEIILDNLPAERQ 327 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR- 240 ++FSAT+ + L++ + + + +++ EN + + VA + N+ +IL Sbjct: 328 SMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEKLAEGIKLYAVATTTSSNSKRSILGD 387 Query: 241 ----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 + IVF T+ + L+ + AL G++SQ +R L R+G+ Sbjct: 388 LITVFAKGGKTIVFTQTKRDADEISLGLSSTI-ACEALHGDISQHQRERTLAGFREGKFS 446 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 +ATDVAARG+D+ +++LVIH E ++PE +HRSGRTGRAG++G+++ + P N +R+ Sbjct: 447 ALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRTGRAGKEGIAILMYPSNGKRKV 506 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI 386 L E + P E + E Q + Sbjct: 507 RSLEHEVGCRFEYINPPRQEDVLETSTQHV 536 >gi|114773657|ref|ZP_01450692.1| Superfamily II DNA and RNA helicase [alpha proteobacterium HTCC2255] gi|114546127|gb|EAU49044.1| Superfamily II DNA and RNA helicase [alpha proteobacterium HTCC2255] Length = 457 Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 145/399 (36%), Positives = 227/399 (56%), Gaps = 12/399 (3%) Query: 5 ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64 +N+ + +++ E GY +LT +Q A L L+ +DVL A+TGSGKT AFGL + +L A Sbjct: 7 QNLRPELLQSVEELGYTHLTDIQAATLPVVLKGEDVLAQAKTGSGKTAAFGLGILQSLDA 66 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123 + AL + PTRELA QV +L L + V + GGV ++ + L++ Sbjct: 67 TR------TYTHALVLCPTRELADQVAEQLRLLARRMDNVKITTLYGGVPMNGQIATLKH 120 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 HI+VGTPGR+ DH+ +++ L+ VLDEAD MLD+GF D++E I P+KR+ L Sbjct: 121 RPHIIVGTPGRVMDHLMKHRVHLKELQQFVLDEADRMLDMGFYDELEVIFQHLPQKRQTL 180 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I ++ QK R+ S + + I+ A V RD A+ +L ++ Sbjct: 181 LFSATYPDTIAQISDAVQKAPQRIETQSLHTG-TKIEQIAYKVTDEHRDQAVAAVLSHYQ 239 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+ AIVFC T+A T+ L + VAL+G+L Q+ER+ L A V +ATDV Sbjct: 240 AQAAIVFCHTKAQTFALTEYLQQKDIAAVALNGDLEQRERTQVLTRFAHKSALVLVATDV 299 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ +++VI+ ++ P+ +HR GRTGRA +G++V ++ ++ + EA Sbjct: 300 AARGLDIDAVDVVINYTVTEEPDVYVHRIGRTGRADAEGLAVTLVSESEMAGLRAI--EA 357 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402 + VV +P +E++R A RI+Q SI G +++ Sbjct: 358 HAQVVLKP-KGIESVRYH-ANRIVQPAFATLSIDGGKRQ 394 >gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans PV-1] gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans PV-1] Length = 628 Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 167/542 (30%), Positives = 271/542 (50%), Gaps = 56/542 (10%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71 +++ ++GY N T +Q A + L +DVL AQTG+GKT AF L L S + + + D Sbjct: 18 KSIKDQGYENATPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPLLSMIDIDQRD---- 73 Query: 72 ASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L +APTRELA+QV + + + G V GG S + R L+ GAH+VVG Sbjct: 74 ---PQVLVLAPTRELAIQVAEAFQQYAHHIKGFHVLPIYGGQSYDIQLRQLKRGAHVVVG 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHIR K LN+S LK +VLDEADEML +GF DD++++L+ P++R++ +FSAT+ Sbjct: 131 TPGRVMDHIRRKTLNLSGLKTLVLDEADEMLRMGFIDDVKWVLEQLPEQRQIALFSATMP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A+++ K+ V I + I R +V+ ++ +A+ IL + I+F Sbjct: 191 AVIRKIAQSHLKNPQHVTIKDKTTTAPTIRQRFWMVSGRNKIDALTRILEFEPFDGMIIF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + AL+G++ Q +R + ++ G+ + +ATDVAARG+D+ Sbjct: 251 VRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIVVATDVAARGLDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + VI+ ++ + E+ +HR GRTGRAGRKG ++ + +R + + N V Sbjct: 311 ERISHVINYDIPHDTESYVHRIGRTGRAGRKGDAILFVAPREKRMLYSIEKATNQRVEQL 370 Query: 371 PAPSVEAI---RERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHD--PEKIAAGFLR 422 P+ E I R D ++ + D L D ++ G +V+ +H+ ++IAA Sbjct: 371 EMPTTEDINNLRIADFKQRISDTLAADGLELFAG----IVEQYEQEHNVPAQEIAAALAF 426 Query: 423 IHRA----------GLCAPEEITPVSLVSGRDRFR-----------------DDSRAFK- 454 + + G E P D+ R D R K Sbjct: 427 LAQGDKPLLIKDVPGTRPQREARPARFEEPEDKRRSMRNLRSERVEDFTAADDKPRREKP 486 Query: 455 ---VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511 +G R G + L VGS AEAR ++ + G+ + IG I + + V Sbjct: 487 RREIGAPER----GKDRYRLEVGSNHGAEARNIVGAIANEVGLESEFIGQIHIADTYSTV 542 Query: 512 EV 513 ++ Sbjct: 543 DL 544 >gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium 1_1_47] gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis YIT 11859] gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium 1_1_47] gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis YIT 11859] Length = 458 Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 141/399 (35%), Positives = 217/399 (54%), Gaps = 20/399 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 A+ GY T++Q + L+ +DV+ +AQTG+GKT +FGL + LL N SPA Sbjct: 19 AIKRMGYTKPTAIQCKAIPVVLQGRDVMGAAQTGTGKTASFGLPVLQKLLPLANTSTSPA 78 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ L ++PTRELA Q L A T + + V GGV + + L+ G I++ T Sbjct: 79 RHPVRVLILSPTRELADQTAEALSNYAADTPIRIGVVYGGVDIKPQAEALRKGVEILIAT 138 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+ + N++ V+LDEAD MLD+GF DI IL++ PKKR+ LMFSAT SP Sbjct: 139 PGRLLDHLEQRNTNLNQSGIVILDEADRMLDMGFLPDISRILNALPKKRQNLMFSATFSP 198 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK------ 245 I LA N+ D V + +A +N + I V + +A+V +L+ G Sbjct: 199 EIKKLAGNFLTDPVVIEVARQNATAATIKQEVFSVNELQKTDALVELLKTRGEDPDGKPL 258 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF + + + R + L + F A+ G+ +Q+ER L+ +DG + +ATDVAA Sbjct: 259 QTIVFVNAKLTARRLARELEKCGFNADAIHGDKTQEERLKLLKDFKDGTLNIMVATDVAA 318 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ +L LVI+ ++ PE+ +HR GRTGRAG G+++ ++ ++ + + + V Sbjct: 319 RGLDIAELPLVINYDVPFVPEDYVHRIGRTGRAGSSGLALMLVTDKDKKSFDAIRKLTRV 378 Query: 366 SVV---WEPAPSVEAIRER---------DAQRILQDPLF 392 +++ +P P A R A R +DP F Sbjct: 379 NLIPQELDPEPRKRARFPRKFSSSTDAWKAPRKPEDPFF 417 >gi|24374899|ref|NP_718942.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24349603|gb|AAN56386.1|AE015775_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 409 Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 126/339 (37%), Positives = 194/339 (57%), Gaps = 2/339 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+E GY T +Q + L ++DV+ AQTG+GKT AF L + L+A+N A Sbjct: 14 DTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAA 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL + PTRELA+QV + T + V + GGVS+ ++ G +++ TP Sbjct: 74 KAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R LN++ L +V DEAD MLD+GF D+I+ +L P +R+ L+FSAT+ + Sbjct: 134 GRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDS 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251 I + +KN +D R+ +A N + I+ R + SDR V +++R + ++F Sbjct: 194 IFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAID-SDRKTEFVSHLVRSKNWQQVLIFS 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + T L + + G+LSQ R LQ + G +V +ATDVAARG+D+ Sbjct: 253 RTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIA 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +L+ VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 313 ELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 351 >gi|269123479|ref|YP_003306056.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314805|gb|ACZ01179.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis DSM 12112] Length = 543 Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 156/521 (29%), Positives = 264/521 (50%), Gaps = 33/521 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLV-SAQTGSGKTVAFGLALASTLLA 64 N+ + EAL ++ +V+ + +Q ++ L+E+ L+ AQTG+GKT AF + + ++ Sbjct: 7 NLSNEMLEALEKKRFVSPSEIQALVIPELLKEETHLIGQAQTGTGKTAAFSIPILEKII- 65 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 P AL +APTRELA QV E+ L K V + GG S+ + ++L+ G Sbjct: 66 ------PTKKVKALILAPTRELANQVSDEIYSLKGKKEVKILAVYGGASIENQIKNLKKG 119 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVVGTPGR+ D I L ++ L+ VLDEADEML++GF +DIE IL+ + + ++ML Sbjct: 120 VDIVVGTPGRVIDMINKGALKLNELEYFVLDEADEMLNMGFIEDIELILEKTNEDKKMLF 179 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSATI I +AK + + + + + + V D+ A+ +L Y Sbjct: 180 FSATIPKPILAIAKRFMPEHKILKVQKKELTTHLTEQIYFEVRREDKFEALCRVLDYKPD 239 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVFC T++ V T L + A+ G+++Q R AL + ++ + +ATDVA Sbjct: 240 FYGIVFCRTKSEVDEVTNKLKARNYDAEAIHGDITQGLREKALDLFKNKILNILVATDVA 299 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARGID+ +L VI+ + ++ +HR GRTGRAG KG+++ FV PQ R+ ++ RE Sbjct: 300 ARGIDVSNLTHVINYSIPQESDSYVHRIGRTGRAGNKGIAITFVTPQE-SRKLAQIKRET 358 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGF 420 + E P+VE I + ++ + ++ D K +D+ LL + E A Sbjct: 359 KSDIKKENIPNVEDIINAKEELLIASVEEI-MLENDYKLYLDLANKLLKGKNTEAAVASL 417 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 LR PE + + V + + +D++R F +++G K Sbjct: 418 LRHIYDDEFIPESYSKIKNV--QVQIKDNTRLF-----------------IALGEKDGLN 458 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 L+ ++ + + + I ++V P+ +F+ V D +++ Sbjct: 459 VNKLLKLIHEKTKVPGRKIKDVKVMPNFSFITVPLDEAEII 499 >gi|332704265|ref|ZP_08424353.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554414|gb|EGJ51458.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 529 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 138/385 (35%), Positives = 214/385 (55%), Gaps = 10/385 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E +P ++ EALS G+ +L VQ + + D++V ++TGSGKT AF L + Sbjct: 46 LEMLPPLLREALSRAGWTSLMPVQAKSMPIIMGGHDLMVQSRTGSGKTGAFVLPIL---- 101 Query: 64 AENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +R P +A AL + PTRELA QV E E L VVAV GGVS ++ + Sbjct: 102 ---ERIDPNLAATQALVLVPTRELARQVAHEAEVLVGDRARVVAVY-GGVSFGKQVEGFK 157 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-R 181 GAHIVVGTPGR+ DH+ N+ L+A++ DEAD ML +GF D++ + PK+R Sbjct: 158 AGAHIVVGTPGRILDHLLRHNFNLQELRALIFDEADRMLSIGFYPDMKQVQRYMPKRRVN 217 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 MFSAT + LA + ++++S+ +++ + V R+ ++ I+ Sbjct: 218 TFMFSATYPAFVMRLAGEFMHKPQMLSLSSKQVHVAEVQHVIYEVPRMGRERCLMRIIEV 277 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +A +FC+T+A V + VLA + L+G+LSQ +R + L +R G R+ ++T Sbjct: 278 ENPTSAFIFCNTKAQVEYVSTVLANFGYDADGLTGDLSQSKRESILDRVRAGSLRLLVST 337 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGID+PDL VI E +PE+ +HR+GRTGRAG G + ++ + +RL + Sbjct: 338 DVAARGIDIPDLSHVIMYEPPEDPESYIHRAGRTGRAGASGEVITLVDVIQKLEMQRLAK 397 Query: 362 EANVSVVWEPAPSVEAIRERDAQRI 386 + +V P P+ E +R ++R+ Sbjct: 398 RFTIDLVSRPLPTDETVRSVASERV 422 >gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1] gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1] Length = 507 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 151/443 (34%), Positives = 238/443 (53%), Gaps = 18/443 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + ++ G+ T +QE + + +DVL AQTG+GKT AFG+ L + + Sbjct: 8 NISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIEKIDPK 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N AL IAPTRELA+QV EL + V + GG + R+ R L+N Sbjct: 68 NPNIQ------ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNKP 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DHI + L + ++ +VLDEADEML++GF DDI IL++ P +R+ L+F Sbjct: 122 QIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ PAI +A+ + +D V I ++ +ID V A ++ + + +L H + Sbjct: 182 SATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQPE 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ V + L+ + + G+LSQ +R + L+ ++ + + +ATDVAA Sbjct: 242 LAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G++V FV P+ M R+ E Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYL--RIVEETT 359 Query: 365 VS--VVWEPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 P + EA+ ++R A L+ L ++ GD + LL HD + A Sbjct: 360 KKRMTPLRPPTTDEALEGQQRLAVETLEG-LIANNNLGDYRTFAAELLENHDAVDVVAAA 418 Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443 LR L + TPV++ R Sbjct: 419 LR----SLTREPDDTPVTITEER 437 >gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC 17982] gi|153798516|gb|EDN80936.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC 17982] Length = 722 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 184/596 (30%), Positives = 291/596 (48%), Gaps = 59/596 (9%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ I A+++ G+ T +Q A + P L +DV+ AQTG+GKT AFGL L + + A+ Sbjct: 51 GLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDAD 110 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 AL +APTRELA+Q + +E A+T + V + GG + L+ G Sbjct: 111 ERNVQ------ALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKRG 164 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D I L++SH++ +VLDEADEML +GF +D+E I S+P R + Sbjct: 165 AQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTAL 224 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243 FSAT+ AI +A+ + KD V+V +++E+ I +V + A+ +L Sbjct: 225 FSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQ 284 Query: 244 --------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 A AIVF TRA V + L+ F+ +SG+++Q ER ++ +++G Sbjct: 285 HIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSL 344 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 V +ATDVAARG+D+ + LV++ ++ PE +HR GRTGRAGR+G ++ R Sbjct: 345 DVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPREHGR 404 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQ------DPLFLDSIQ------GDEKKM 403 R+ + + PS A+ E A R+L+ + LD + GDE + Sbjct: 405 LRRIEKLTGTEMEEVEIPSPAAVSEFRASRLLEGLSARIERGRLDMYKRLLADLGDEISV 464 Query: 404 VDVLLA-------KHDP----EKIAAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSR 451 D+ A P EK G +I R L E + +GRD+ R Sbjct: 465 EDIAAALMATAVGDEGPAPRVEKDRRGNGKIRREEQLDESGEFVGATFEAGRDK----DR 520 Query: 452 AFKVGG-------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504 K G G R + + + VG K + + ++ + GI+ + IG I + Sbjct: 521 PLKGGANGARRRAGGRPAPGSGTRYRIEVGKKDRVKPGSIVGAIAGEGGIDGRDIGNIEI 580 Query: 505 QPDLTFVEVSAD-GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDG 559 P + V+++AD + L R I Y+ G + R + G +S +DG Sbjct: 581 YPTFSLVDITADLSSEQLSR-------ISKGYVSGRQLRIRVDEGPGGRSHGDRDG 629 >gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca ATCC 27029] Length = 585 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 166/513 (32%), Positives = 261/513 (50%), Gaps = 21/513 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70 ALS GY T +Q + P L +D+L A TG+GKT AF L L + A+ D Sbjct: 34 ALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQRMPVGRADGD--- 90 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P++L + PTRELAVQV G V GG + R+ R L +G +VV Sbjct: 91 ----PVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHGVDVVVA 146 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR DHI L + L VVLDEADEMLD+GF +DIE IL+ +P R+ ++FSAT+ Sbjct: 147 TPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVLFSATMP 206 Query: 191 PAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 I LA+ + D VR+ I E + + A +VA + + A+ +L A Sbjct: 207 ARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDVESPTAA 266 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVFC +R V R T+ + ++ AL G +SQ++R + +R G A + +ATDVAARG Sbjct: 267 IVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARG 326 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ L V++ ++ S PE+ +HR GR GRAGR+G+++ + R + + R + Sbjct: 327 LDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTGQRI 386 Query: 368 VWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI- 423 + P+V +R R Q L++ L D + + +V+ L + D ++A +++ Sbjct: 387 AIDKIPTVADMRTRRLELTQGALRESLLEDDLD-PYRAIVESLTDEFDLVEVALAAVKLA 445 Query: 424 HRA---GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 H A G EEI V + R+ + + G +R G++ + +G + Sbjct: 446 HEATSPGSDDEEEIPQVPVRGPREGRPEAGGRGERRGPARPRTGGTTQVFIGLGRRAGVR 505 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + L+ + + I+ + IG+I + + VEV Sbjct: 506 PQDLVGAITGETRISGRDIGSIEIADRFSLVEV 538 >gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787 [Chlorella variabilis] Length = 689 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/408 (35%), Positives = 225/408 (55%), Gaps = 16/408 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL ERG +L +Q+ + P +R D++ A+TGSGKT+AF + + ++A Sbjct: 165 ALEERGITSLFPIQKTVFEPAMRGADLIARAKTGSGKTLAFAIPIIEKIMAGPRNLR--- 221 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L +APTRELA QV RE+ G + + ++L+ G IVVGTPG Sbjct: 222 KPQCLVLAPTRELAKQVEREIAATAPGLGCGCYYGGN--PIGPQLKELRRGVDIVVGTPG 279 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D I L++S ++ VVLDEAD+ML++GF D+E IL++ P++R+ ++FSAT+ + Sbjct: 280 RIIDLIDQDALDLSMVRFVVLDEADQMLNVGFEKDVETILENVPQERQTMLFSATLPRWV 339 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG-AKNAIVFC 251 L K Y + +++ E D D L +D R + +V++L +G AIVF Sbjct: 340 KKLVKQYLNNPENIDLVGEGNTGQDPDSITALAVPADARRSVLVDLLTVYGEGGKAIVFT 399 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + HL AL G++SQ+ER L R + V +ATDVAARG+D+P Sbjct: 400 QTKREADEVAASVGGHL-PCGALHGDMSQREREKVLASFRANKLMVLVATDVAARGLDIP 458 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS-VVWE 370 D+++V+H EL +PE+ LHRSGRTGRAG+ G ++ + +R+ RE V V Sbjct: 459 DVDVVVHYELPQDPESFLHRSGRTGRAGKSGTAIAMFQPKEIGYFKRILRETEVQGVKLI 518 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPE 414 APS + E A++++ LD + + +K + +LL+ DP+ Sbjct: 519 TAPSPTQVIEAAAKQVMYR---LDGVDAEVRKYFTPVAKMLLSSRDPQ 563 >gi|325198557|gb|ADY94013.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis G2136] Length = 457 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ PK+R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|325132396|gb|EGC55089.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M6190] gi|325138385|gb|EGC60953.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis ES14902] gi|325142616|gb|EGC65008.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis 961-5945] gi|325201879|gb|ADY97333.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240149] gi|325208368|gb|ADZ03820.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis NZ-05/33] Length = 457 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ PK+R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM 16795] gi|164603369|gb|EDQ96834.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM 16795] Length = 541 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 156/517 (30%), Positives = 261/517 (50%), Gaps = 20/517 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++P I +++E G+ + +Q + L KDV+ AQTG+GKT AF + + Sbjct: 6 FEDLPISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSIPILEK 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRD 120 + N A+ + PTRELA+QV +E+ L K+G+ GG + R+ + Sbjct: 66 VDPNNKHLQ------AIVLCPTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPIDRQIKA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++G +V+GTPGR+ DHI K L + +K VVLDEADEMLD+GFR+DIE IL+ +P +R Sbjct: 120 LKSGVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQTPIER 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + FSAT+ I L K YQ + + + + +I + +++ + ++ Sbjct: 180 QTTFFSATMPKEILELTKLYQHEPEIIKVVRKELTVPNIKQFYIETRRANKLEVLCRLID 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + K ++VFC+T+ L + AL G+L Q +R + R G + +A Sbjct: 240 VYNPKLSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTIDILVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGID+ D+++V + +L + E +HR GRTGRAGR+G+S + R+ + Sbjct: 300 TDVAARGIDVDDVDMVFNYDLPQDEEYYVHRIGRTGRAGREGVSFSFVYGKEMRKMRDIE 359 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPE--KI 416 R +V P++ + E+ + +S + V+ L + + ++ Sbjct: 360 RYTKCKLVKHSIPTIADVEEKKVAAFFKQVKDTVNESNLAKQINWVEALCEEQELSTLEV 419 Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476 AA +++ E I S R R +A K GS +G ++VG K Sbjct: 420 AAALVKLAMGEELKEEIIEEPS----RKEARKSKKAKK---GSTGAERGMVRLFINVGRK 472 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 Q+ +A+ ++ + +GI+ + +G I + TFVEV Sbjct: 473 QRVQAKDIVGAIAGEAGISGKLVGTIDIYDKYTFVEV 509 >gi|320540013|ref|ZP_08039670.1| putative ATP-dependent RNA helicase, specific for 23S rRNA [Serratia symbiotica str. Tucson] gi|320029936|gb|EFW11958.1| putative ATP-dependent RNA helicase, specific for 23S rRNA [Serratia symbiotica str. Tucson] Length = 461 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 216/367 (58%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV +T VQ A L L+ +DV A+TGSGKT AFG+ + +N + S Sbjct: 19 LNQLGYVEMTPVQLAALPAILKGQDVRAKAKTGSGKTAAFGIGVL-----DNINVALVST 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA Q+ +EL L + + ++ +C GG + + L + HIVVGTP Sbjct: 74 Q-ALILCPTRELADQMSKELRRLARFTQNIKILTLC-GGQPLGPQLDSLVHAPHIVVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ +H+R K L + LK +VLDEAD MLD+GF DDI+ ++ +P +R+ L+FSAT Sbjct: 132 GRILEHLRKKTLVLEMLKVLVLDEADRMLDMGFADDIDEVISETPPQRQTLLFSATYPAD 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q++ +++ + + + Q + I+ R + R +V+++R++ + +VFC+ Sbjct: 192 IERISARVQREPLKIEVDNGDEQ-TTIEQRFYETTANQRAALLVSVIRHYQPASCVVFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + V+AL G+L Q+ER L + RV +ATDVAARG+D+ + Sbjct: 251 TKRDCQTVFEALEAYGISVLALHGDLEQRERDQVLVRFTNRSCRVLVATDVAARGLDITE 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +P+ +HR GRTGRAGR G+++ PQ M RA + + + + W P Sbjct: 311 LELVVNYELAFDPQVHVHRIGRTGRAGRHGLAISLCTPQEM-VRAHAIEDDMQMKITWVP 369 Query: 372 APSVEAI 378 + + Sbjct: 370 VSELSVV 376 >gi|325204407|gb|ADY99860.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240355] Length = 457 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ PK+R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B] gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B] Length = 598 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 136/382 (35%), Positives = 213/382 (55%), Gaps = 9/382 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + +AL++ GY + +++Q + P L D++ AQTG+GKT AF L + LA Sbjct: 15 LPDFLLKALADVGYESPSAIQSMTIPPLLDGHDLVGQAQTGTGKTAAFALPV----LARL 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 D + A P AL + PTRELA+QV + Y+K G V GG + R LQ G Sbjct: 71 D--TKAGGPQALVLTPTRELAIQVAEAFQKYARYSK-GFKVVPIYGGSDYRTQLRQLQRG 127 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HI+VGTPGR+ DH+R L++S LK +VLDEADEML +GF DD+E+IL+ +P R++ + Sbjct: 128 VHIIVGTPGRVMDHMRRGSLDLSSLKTLVLDEADEMLRMGFIDDVEWILEQTPATRQIAL 187 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ AI +AK + + + I + ++ I R ++A + +A+ IL Sbjct: 188 FSATMPDAIRRIAKTHLQSPQEITIKRKTVTNASIRQRVWIMAGVQKLDALTRILETEDY 247 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F TR + LA F AL+G+++Q +R + + G+ + +ATDVA Sbjct: 248 DGVIIFVRTRIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLVATDVA 307 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ + VI+ ++ ++PE +HR GRTGRAGR G ++ + +R + R Sbjct: 308 ARGLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAGRTGEAILFAAKRERRLLHAIERTTG 367 Query: 365 VSVVWEPAPSVEAIRERDAQRI 386 + PS E + ++ A R Sbjct: 368 QKIDQMTLPSAEQVVDKRAARF 389 >gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM 9485] Length = 550 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 173/513 (33%), Positives = 264/513 (51%), Gaps = 27/513 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E GY T +Q + L +DV+ AQTG+GKT AF L + + E P Sbjct: 17 LRELGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPMIEQVTDE-----PVVQ 71 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL +APTRELAVQV + + V GG + R+ R L G +VVGTPGR Sbjct: 72 --ALVLAPTRELAVQVAEAVHRYGRHRALRVLPIYGGQPIERQLRGLAQGVQVVVGTPGR 129 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + DH+R L HL+ VVLDEADEMLD+GF +++E IL +P +R+ +FSAT+ PA+ Sbjct: 130 VLDHLRRGTLRFDHLRLVVLDEADEMLDMGFAEELEAILQLTPAERQTALFSATLPPAVQ 189 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 +L Y + VRV+IA+E I + D+ +A+ +L + AIVFC TR Sbjct: 190 SLTLRYTRQPVRVSIAAEQLTTPHIRQIYYEILARDKLDALCRVLDAEMPQLAIVFCRTR 249 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V + L + +L G+LSQ R ++ R+G+ V +ATDVAARG+D+ ++ Sbjct: 250 QEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVLVATDVAARGLDIAEVS 309 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVWEP 371 VI+ ++ ++PE+ +HR GRTGRAGR G+++ F+ P+ M + ER+ R + P Sbjct: 310 HVINYDVPTDPESYVHRIGRTGRAGRAGVAITFITPRERRMLQTIERVTR-TRIERCQMP 368 Query: 372 APSVEAIRERDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 + A R R A R +Q P + ++D L +HD +AA L++ Sbjct: 369 TLADVAARRRLALRDQLREAMQAPGLTSYM-----DLLDELTVEHDLRTLAAAALKLLLN 423 Query: 427 GLCAPEEITPVSLVSGR----DRFRDDSRAFKVGGGSRDNFK--GSSWFSLSVGSKQKAE 480 + T L R +R SRA + R + G + L++G + Sbjct: 424 ETETEQVDTITRLEPPRSEQVERGERSSRARRAAVDERPTRRESGMARIRLNLGRNDQIR 483 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++ + +G++ +SIGAI VQ ++ V+V Sbjct: 484 PADIVGAIANEAGLSGRSIGAIEVQARMSLVDV 516 >gi|254669919|emb|CBA04478.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha153] Length = 457 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus polymyxa SC2] gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus polymyxa SC2] Length = 525 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 257/473 (54%), Gaps = 26/473 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+VI +A++E G+ T +Q + L+ KD++ AQTG+GKT AFG+ + + + Sbjct: 7 FDLEPKVI-QAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMINKIS 65 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +++ AL +APTRELA+QV E+E L G+ GG + R+ R L+ Sbjct: 66 KNDEKIR------ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKK 119 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 I++GTPGRL DHI K + + + VVLDEADEMLD+GF +DI+ IL P +R+ + Sbjct: 120 KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTM 179 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ P I LA+ + KD V++ + ID + V + A+ ++ Sbjct: 180 LFSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLIDMES 239 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVF T+ V + L + + L G+LSQ +R ++ RDG V +ATDV Sbjct: 240 PELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDV 299 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRR--AERLF 360 AARG+D+ + V++ +L +PE+ +HR GRTGRAG++G + FV P+ + ER+ Sbjct: 300 AARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIERVT 359 Query: 361 REANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415 R + +P P++ EA+ + QRI+ + L L+ ++ E K + +L ++D + Sbjct: 360 RH---RIPRKPLPTLAEALEGK--QRIIAERL-LEVVEKGELNEYKGLAIQMLEQYDSVQ 413 Query: 416 IAAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 + + L++ A E+TP + + R D + GG N+ G S Sbjct: 414 LLSAALKLMTGEKREASIELTPEDPIRAKRRKPD----VRSGGRKPSNYSGRS 462 >gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41] gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41] Length = 508 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 151/449 (33%), Positives = 238/449 (53%), Gaps = 30/449 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + ++ G+ T +QE + + +DVL AQTG+GKT AFG+ L + + Sbjct: 8 NISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIEKIDPK 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N AL IAPTRELA+QV EL + V + GG + R+ R L+N Sbjct: 68 NPNIQ------ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNRP 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DHI + L + ++ +VLDEADEML++GF DDI IL++ P +R+ L+F Sbjct: 122 QIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPSERQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ PAI +A+ + +D V I ++ +ID V A ++ + + +L H + Sbjct: 182 SATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQPE 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ V + L+ + + G+LSQ +R + L+ ++ + + +ATDVAA Sbjct: 242 LAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G++V FV P+ M R+ E Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYL--RIVEETT 359 Query: 365 VS--VVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--------GDEKKMVDVLLAKHDPE 414 P S EA+ + Q L LD+++ GD + + +L HD Sbjct: 360 KKRMTPLRPPTSDEAL-------VGQQRLALDTLEGLIANNNLGDYRTLASEILENHDAI 412 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGR 443 + A LR L + TPV++ R Sbjct: 413 DVVAAALR----SLTKEPDDTPVTISEER 437 >gi|110638956|ref|YP_679165.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406] gi|110281637|gb|ABG59823.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406] Length = 446 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 132/336 (39%), Positives = 190/336 (56%), Gaps = 5/336 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDR 68 I +ALSE GY T +Q + L+ KD+L AQTG+GKT AF + + L + DR Sbjct: 12 ILKALSEEGYTTPTPIQSQAIPYVLQGKDLLGCAQTGTGKTAAFSIPILQLLSVKKSTDR 71 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P + L + PTRELA+Q+G L+ TG+ V GGV+ R+ LQNG ++ Sbjct: 72 KRPIRS---LIVTPTRELAIQIGESLQAYGKYTGLTSTVIFGGVNQSRQVTALQNGIDVL 128 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + +++ H++ VLDEAD MLD+GF D+ +L + P KR+ L FSAT Sbjct: 129 VATPGRLLDLMNQGFISLRHIEIFVLDEADRMLDMGFVHDVRRLLLALPAKRQSLFFSAT 188 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P I LA N + +V + + I V +++N +V +L+ K + Sbjct: 189 MPPEIVKLADNILVNPSKVEVTPVSSTADTIKQFMYFVDRGNKNNLLVEVLQDPKIKTCL 248 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ + K+LAEH + A+ G SQ R NAL + R+ +ATD+AARGI Sbjct: 249 VFTRTKHVADKVVKMLAEHKIKAEAIHGNKSQNARQNALTNFKAQTTRILVATDIAARGI 308 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 D+ +LE VI+ E+ + PE +HR GRTGRAG KG + Sbjct: 309 DVDNLEFVINYEIPNIPETYVHRIGRTGRAGAKGTA 344 >gi|121635112|ref|YP_975357.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18] gi|120866818|emb|CAM10576.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18] Length = 483 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 43 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 99 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 100 -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 154 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ PK+R+ L Sbjct: 155 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 214 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 215 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 274 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 275 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 334 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 335 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 390 >gi|332667550|ref|YP_004450338.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336364|gb|AEE53465.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 516 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 218/384 (56%), Gaps = 8/384 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+++ G+ T +Q + L KD++ AQTG+GKT AFG+ L ++ Sbjct: 11 LSQEVQSAINDMGFAEATPIQSEAIPHLLNGKDLIGQAQTGTGKTAAFGIPLLESIDCST 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125 + A+ + PTRELAVQV EL L K G+ ++ GG S+ R+ ++L+ G Sbjct: 71 REVA------AIVLCPTRELAVQVAEELRKLAKYKKGLFISTIYGGDSIQRQLKELKAGP 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DH++ K L + H++ VLDEADEML++GFR+DIE +L+ P+ R+ ++F Sbjct: 125 QVVVGTPGRVMDHLQRKTLRLDHIQMAVLDEADEMLNMGFREDIENVLNQMPETRQTVLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +AK +QK + V + E ++ ID + + ++ I ++ Y+ + Sbjct: 185 SATMPRPILEIAKRFQKSPIHVKVVKEELTNASIDQIYYDIPVQAKEAVIARLIEYYDLQ 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF + + +V T+ L A+ G+L+Q +R+ L R G V +ATDVAA Sbjct: 245 RVIVFANMKKTVDDLTEGLNLLGISAKAIHGDLNQNQRNAVLTAFRGGAVNVLVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RGID+ ++ V + +L + E +HR GRTGRAG+ G S FV +N + R + + Sbjct: 305 RGIDVSSVDGVFNYDLPYDAEYYVHRIGRTGRAGKLGKSFSFVTGRNDRYRLRDIEDFSK 364 Query: 365 VSVVWEPAPSVEAIRERDAQRILQ 388 V + P+V+ + +R ++ + Sbjct: 365 VRIDRHNVPTVQDLAKRQQAKLWE 388 >gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6] gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter chlorophenolicus A6] Length = 694 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 167/545 (30%), Positives = 278/545 (51%), Gaps = 27/545 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY + +Q A + L +DV+ AQTG+GKT AF + S L +D P+ Sbjct: 64 ALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSR 123 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV E YAK V GG + + L+ GA +VVGT Sbjct: 124 KTQALVLAPTRELALQVA-EAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGT 182 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI L++S L+ +VLDEADEML +GF +D+E I +P+ R++ +FSAT+ Sbjct: 183 PGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPEDRQVALFSATMPG 242 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++K Y D +++ ++ ++I R + + + +A+ IL I F Sbjct: 243 QIRRMSKQYLNDPAEISVKTKTSTGTNIRQRYLQIMGPQKLDAMTRILEVEEFDGVIAFV 302 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L FQ A++G++ QQ+R + +++GR + +ATDVAARG+D+ Sbjct: 303 RTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLDVE 362 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368 + VI+ ++ + E+ +HR GRTGRAGR G ++ F+ P+ + R E+ R++ + Sbjct: 363 RISHVINYDIPHDTESYVHRIGRTGRAGRNGDAILFMTPREKYLLRAIEKATRQSVEQMH 422 Query: 369 WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427 A +V +R + A+RI + ++ ++ M L+A ++ E Sbjct: 423 LPTAETVNTLRLGKFAERITE------TLASEDVSMFRDLIASYEEEHKVPAAEIAAALA 476 Query: 428 LCAP-------EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 + A +E+ R+R +D F G SR +G++ + ++VG +Q+ Sbjct: 477 VMAQGGQPLLVKELAAAPDFQKRERSKD---GFGSRGPSRQLTEGNATYRIAVGRRQRVM 533 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYL 536 ++ + GI+ IG I ++ D + VE+ AD + L RT + I L+ Sbjct: 534 PGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLELD 593 Query: 537 GGEKP 541 G KP Sbjct: 594 NGRKP 598 >gi|294668347|ref|ZP_06733450.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309665|gb|EFE50908.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 399 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 204/355 (57%), Gaps = 10/355 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I AL+E+GY T +Q A + L D+L +AQTG+GKT AF L L R Sbjct: 16 QEIVSALTEQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERL----KR 71 Query: 69 F-----SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 F SPA P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ Sbjct: 72 FATASTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLR 131 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G IVV T GRL DH++ K +N S ++ VVLDEAD MLD+GF DDI I+ PK+R+ Sbjct: 132 AGCEIVVATVGRLLDHVKQKNINFSKVEIVVLDEADRMLDMGFIDDIRTIMRMLPKQRQT 191 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT + I LA+++ ++ +A++N +++++ + V + + ++ Sbjct: 192 LLFSATFAEPIRKLARDFMNSPEQIEVAAQNTTNANVEQHVIAVDTFQKRRLLERLIVDL 251 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVFC T+ SV + T+ L A+ G+ SQQ R L ++G RV +ATD Sbjct: 252 DMNQVIVFCKTKQSVDQVTRDLQRREISAQAIHGDKSQQTRLETLSAFKEGNLRVLVATD 311 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 VAARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ + Q+ E Sbjct: 312 VAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDETEQKMFE 366 >gi|254805204|ref|YP_003083425.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha14] gi|254668746|emb|CBA06600.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha14] Length = 457 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM 265] Length = 598 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 173/530 (32%), Positives = 267/530 (50%), Gaps = 35/530 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + AL++ GY T +Q + + +DVL AQTG+GKT AF L + S Sbjct: 16 NLAEPVLRALADVGYETPTPIQARTIPLLIEGRDVLGQAQTGTGKTAAFALPILS----- 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 N FS A+ P L +APTRELA+QV YA+ G V GG + R L+ Sbjct: 71 NIDFS-ATEPQVLVLAPTRELAIQVAEAFHK-YAEHLKGFHVLPIYGGQEYGSQLRMLKR 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G H+VVGTPGR+ DH+R LN+ LK +VLDEADEML +GF DD+E+IL+ +P R++ Sbjct: 129 GVHVVVGTPGRVMDHMRKGSLNLHSLKCLVLDEADEMLRMGFIDDVEWILEQTPSDRQVA 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I +A+ Y D V I ++ I R +V S + + + IL Sbjct: 189 LFSATMPAPIRRIAQKYLNDPAEVTIQAKTTTVDTIRQRYWIVGGSHKIDILTRILEVEP 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + L + AL+G++ QQ+R + ++ G + IATDV Sbjct: 249 FDGMIIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGALNIVIATDV 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLF 360 AARG+D+ + VI+ ++ S+ E+ +HR GRTGRAGR G ++ FV P +NM ER Sbjct: 309 AARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPRERNMLSSIERAT 368 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKI 416 R+ + PS E I ++ + Q D+I ++ ++V+ +HD ++ Sbjct: 369 RK---KIELMELPSTEIINDKRIAKFKQR--ITDTIAAEDLAFFTRLVEQYCHEHDVAEV 423 Query: 417 AAGFLRIHRAGLCAPEEIT--------PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-- 466 A P T PV G +R RDD+ K RD+ G Sbjct: 424 EAAAALASMVQGDTPLLFTAKPAKAERPVRREMG-ERSRDDAPFRK--KARRDDMYGDER 480 Query: 467 -SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + + VGS +A ++ + G++ ++IG I + D + VE+ + Sbjct: 481 REVYRIEVGSGHGVQAGNILGAIINEIGLDPEAIGRISIGDDYSTVELPS 530 >gi|329120622|ref|ZP_08249285.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC BAA-1200] gi|327460846|gb|EGF07180.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC BAA-1200] Length = 455 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 132/349 (37%), Positives = 205/349 (58%), Gaps = 2/349 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69 I AL+E+GY T +Q A + L D+L +AQTG+GKT AF L AL N Sbjct: 13 IVSALAEQGYETPTPIQAAAIPKVLAGHDLLAAAQTGTGKTAAFMLPALERLKRYANTSA 72 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ G IV Sbjct: 73 SPAMHPVRMLVLTPTRELADQIDKNVQAYIKNLPLRHTVLFGGVNMDKQTADLRVGCEIV 132 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V T GRL DH++ K +N + ++ VVLDEAD MLD+GF DDI I+ P++R+ L+FSAT Sbjct: 133 VATVGRLLDHVKQKNINFAKIETVVLDEADRMLDMGFIDDIRAIMGMLPRERQTLLFSAT 192 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA+++ V +A++N +++++ + V ++ + ++ K I Sbjct: 193 FADPIRKLAQDFMNAPETVEVAAQNTANANVEQHVIAVDTFEKRRLLERLIVDLDIKQVI 252 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ SV + T+ L ++ G+ SQQ R L ++G RV +ATDVAARG+ Sbjct: 253 VFCKTKQSVDQVTRDLQRRGLAAQSIHGDKSQQTRLETLNAFKEGGLRVLVATDVAARGL 312 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ +N Q+ E Sbjct: 313 DIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDENEQKMFE 361 >gi|260777558|ref|ZP_05886451.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC BAA-450] gi|260605571|gb|EEX31856.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC BAA-450] Length = 458 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 140/394 (35%), Positives = 222/394 (56%), Gaps = 15/394 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L+ Y +T +Q+ L L KDV+ +TGSGKT AF L L S L + R Sbjct: 16 ETLNSLNYTEMTPIQQQALPIVLEGKDVIGQGKTGSGKTAAFTLGLLSNLSVKRFRVQ-- 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L + PTRELA QV +E+ L + V GG+ + + L++GAHI+VGT Sbjct: 74 ----TLVLCPTRELADQVAKEVRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ +N++ + +VLDEAD ML++GF + I+ I+D +P+ R+ L+FSAT Sbjct: 130 PGRILDHLSKGRINLAEMNTLVLDEADRMLEMGFEEAIDAIIDEAPQDRQTLLFSATFPK 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA +D + + S Q + I+ R L A +RD+A+ +L H ++++VF Sbjct: 190 NIESLASKVMRDPQMIKVES-THQTTTIEQRFYKLNATEERDDALEALLLTHKPESSVVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V + T L+ F VV + G++ Q+ER AL M + + +ATDVAARG+D+ Sbjct: 249 CNTKKEVQKVTDELSHRGFSVVEIHGDMEQREREQALTMFANKSVSILVATDVAARGLDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 +L+ V + ELS +PE +HR GRTGRAG KG++ + + R R+ ++++ Sbjct: 309 DNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARIDEYMDIAI--- 365 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 +P+V + E+ +R + I G +K+ V Sbjct: 366 -SPAV--LPEKPVERPFYPKMQTIQILGGKKQKV 396 >gi|281424769|ref|ZP_06255682.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris F0302] gi|281401139|gb|EFB31970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris F0302] Length = 625 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 166/527 (31%), Positives = 262/527 (49%), Gaps = 21/527 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE + + I A+ E G+ + VQE ++ L K DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHR 116 L + A+N A A+ ++PTREL VQ+ +L ++ G+ + GG + Sbjct: 61 LLQKVDAQN------RATQAIVLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRP 114 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + R +++G IVV TPGRL D I + ++ + VVLDEADEML++GF D I I + Sbjct: 115 QIRTIKHGVQIVVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQL 174 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 P R L+FSAT+S + +AK+Y D + + S N +++ LV D+ A+ Sbjct: 175 PDDRNTLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIYYLVHSKDKYLALK 234 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 I+ +H AI+FC T+ L + + AL G+LSQQ+R +Q R + Sbjct: 235 RIVDFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQ 294 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 + +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+KG S+ +I + + Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKV 354 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DP 413 ++ ++ + P E I ++ +++ D + D + +D ++ + D Sbjct: 355 RQIEKQIGKDFIDGELPKPEEICKKQLYKVMDDIMKTDVDEDQIAPYMDDIMRQFEYVDK 414 Query: 414 EKI-----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468 E I F R APE P++ R D S KV G R + S + Sbjct: 415 EDIIKKMVTVTFGRFLDYYKHAPEIEKPMAGKGSRSERGDRSMRGKVSSGRRQHVAESGY 474 Query: 469 --FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +++G +M L + RQ +G I + +++EV Sbjct: 475 RRLFINLGKSDGFYPGEIMQYLNKHVH-GRQEVGHIDLLQKFSYIEV 520 >gi|170754257|ref|YP_001782408.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str. Okra] gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum B1 str. Okra] Length = 524 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 159/520 (30%), Positives = 269/520 (51%), Gaps = 44/520 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ G+ +++QE + L DV+ AQTG+GKT+AFG + S L + Sbjct: 10 NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISAL-CD 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 N++ AL + PTRELA+Q+ EL+ L Y+KT V+ GG S+ R+ +D+++ Sbjct: 69 NEK---KKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGR+ DHI + L + + ++LDEADEML++GF +DIE I++S+ ++++ + Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I LA NY +KD + I ++ I V D+ AI I+ Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSE 243 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++AI+FC T+ V + + + V + G++SQ +R N L+ + +ATD Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 VAARGID+ ++ VI+ ++ + E+ +HR GRTGRA ++G + V P+ + R+ ER+ Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415 + + + P++E I E+ +L D I+ ++ + MV L D + Sbjct: 364 IKS---KITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSE 418 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 ++A + + L S F + + R LSVG Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 K + L+ + SS + IG I + TF++VS+ Sbjct: 456 KDSINVKSLLTFIQDSSSVKNHEIGDIDILDKFTFMDVSS 495 >gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18] gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18] Length = 732 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 168/520 (32%), Positives = 263/520 (50%), Gaps = 29/520 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY + +QE + L DV+ AQTG+GKT AF L S + D + Sbjct: 75 ALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMAELADINGVSR 134 Query: 74 APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA+QV + V GG + L+ GA +VVGTP Sbjct: 135 DTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVVGTP 194 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++S+L+ +VLDEADEML +GF +D+E IL+ +P +++ +FSAT+ + Sbjct: 195 GRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVALFSATMPNS 254 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ Y D V + ++ S+I R + V S + +A+ +L IVF Sbjct: 255 IRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVLEVENYDGIIVFVR 314 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L F A++G++ QQ R + +RDGR + +ATDVAARG+D+ Sbjct: 315 TKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARGLDVER 374 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVW 369 + LV++ ++ + E+ +HR GRTGRAGR+G ++ FV P+ M R+ E+ R+ Sbjct: 375 ISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKATRQK-----V 429 Query: 370 EP--APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--EKIAAGFL 421 EP P+ EA+ E QR Q ++I+ ++ +++++ +HD E IAA Sbjct: 430 EPMHMPTAEAVNETRKQRFAQQ--ITETIESEDLSFFRQIIEDYENEHDTTAEDIAAALA 487 Query: 422 RIHRAG----LCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476 I + G L E+I S S D R +A + N +G + L+VG Sbjct: 488 VIAQQGRPFFLDESEDIAHKSRPFSDEDSDRGGRKAKRA-----HNDEGMVNYKLNVGRS 542 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + A ++ L GI IG+I ++ T V + D Sbjct: 543 SRVTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPED 582 >gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090073|sp|Q8K9H6|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName: Full=ATP-dependent RNA helicase deaD homolog gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 601 Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 175/571 (30%), Positives = 281/571 (49%), Gaps = 48/571 (8%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + I ++LS+ GYV + +Q A + L +DVL AQTGSGKT AF L L L Sbjct: 10 FLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLN 69 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 AP L +APTRELAVQV ++ G+ V GG + R L+ Sbjct: 70 IN------LKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALR 123 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G IVVGTPGRL DH++ LN+S+L A+VLDEADEML +GF +D+E I+ PK+ + Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQT 183 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ AI ++K + K+ + I S DI ++ + + +A++ L Sbjct: 184 ALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIK-QSYWMVYGRKTDALIRFLEVE 242 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 I+F T+ + ++ L + + AL+G+++Q R L+ ++ GR + IATD Sbjct: 243 DFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIATD 302 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ + VI+ ++ + E+ +HR GRTGRAGR G ++ + +R + R Sbjct: 303 VAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 362 Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE-KKMVDVLLAKHDPE--KI 416 N ++ P +E + +R +R +Q+ L+S DE ++D L + D + + Sbjct: 363 INQTIPEVQLPKIEVLCKRRLERFAKKVQEQ--LESRDLDEYSALLDKLYSPDDLDIKTL 420 Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRD 461 A+ L++ + G L+ +D + SR F R Sbjct: 421 ASALLKMAQGG---------RPLIIKKDLLQRPSREFSFKDDRRREDNHRNNNRNRRERR 471 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDL 520 K + + G E R ++ + IN ++IG I++ VE+ DL Sbjct: 472 ELKDIDLYRIEAGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYAIVELPKGLSKDL 531 Query: 521 LRRTVK---LDKGIQLKYLGGEKPDFRGYKS 548 L+R +K L+K I +K L D + Y++ Sbjct: 532 LQRLIKTKILNKKINIKLLR----DIKNYET 558 >gi|309774568|ref|ZP_07669594.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae bacterium 3_1_53] gi|308917683|gb|EFP63397.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae bacterium 3_1_53] Length = 585 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 159/519 (30%), Positives = 258/519 (49%), Gaps = 30/519 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + +A+ E GY N T +Q + + KDVL + TG+GKT AFG+ + Sbjct: 9 ISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIPAIEKVC--- 65 Query: 67 DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AL I PTREL QV EL ++ K GV + GG + R+ + L+ G Sbjct: 66 ---QGTRNPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKRGC 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183 IVVGTPGR+ DH+ + L + V+LDEADEML++GF++DIE IL P+ + + + Sbjct: 123 GIVVGTPGRIMDHLNRRTLKLDDTNMVILDEADEMLNMGFKEDIEEILSMMPEGNEHQTV 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I + K +Q D VRV I S R ++ + NA+ +L ++ Sbjct: 183 LFSATWPAEILRITKQFQNDPVRVEIKSSQRTIDTVEQIYYEAPRGKKANALRVLLSHYD 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++FC+T+ V L +H + ++L G++ Q+ RS ++ R G + IATDV Sbjct: 243 PDLCMIFCNTKKMVDELCDELNKHDIKAISLHGDMKQEFRSRVMEQFRSGNYPILIATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFRE 362 AARGID+ D++LV++ ++ + E +HR GRTGRAG+KG+++ ++ QR R + R Sbjct: 303 AARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVSGGKQRAGIRDIIRY 362 Query: 363 ANVSVVWEPAPSVEAIRE--RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 +++ P+ + E R+A + I + ++ + L+A E IA Sbjct: 363 TKTNIIRHALPTSAQMMEANRNAFVAKVKEACDEGITEESMEIANELIA----EGIALEN 418 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 + + EI + R+ + AF + +VG + Sbjct: 419 IISALISMTYKNEIIDIEAEEDAKRY---ASAFD-----------AISLKFNVGRNHGVQ 464 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 ++ + +G+N ++IG I V+ D T V+V A VD Sbjct: 465 PGNIVAAIIEETGLNGKAIGRIDVRKDFTLVDVEASKVD 503 >gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320] gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320] Length = 457 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 211/363 (58%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQEA L L KDV A+TGSGKT AFGL L + A+ +F+ S Sbjct: 18 LNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAK--QFNTQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV EL L + ++ +C GGV +R L + AHI+V TP Sbjct: 75 ---LVLCPTRELADQVANELRRLARFLPNIKILTLC-GGVPFSIQRDSLIHAAHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ + + ++ +K +VLDEAD MLD+GF DDI I+ +R+ L+FSAT Sbjct: 131 GRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSTQRQTLLFSATWPDE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +++ Q+D V + I S + + ++ + ++ + + +L +H + +VFC+ Sbjct: 191 IAKISRKIQQDPVTIEINSPDELPA-VEQQFYEISRYGKLGLLQKLLSHHQPNSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L E V+AL G++ Q+ER L +G RV +ATDVAARG+D+ Sbjct: 250 TKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLVATDVAARGLDIKA 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LE+VI+ ELS +PE +HR GRT RAG G+++ F P+ + RA L N+ + W+ Sbjct: 310 LEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIP-RANALEEMLNIKLDWQS 368 Query: 372 APS 374 APS Sbjct: 369 APS 371 >gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 778 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 211/370 (57%), Gaps = 13/370 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E GY + + +Q A + L +DVL AQTG+GKT +F L + + + + + Sbjct: 22 LQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILARIDIKQ------TT 75 Query: 75 PLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL +APTRELA+QV + + G V GG S + L+ G H+VVGTPG Sbjct: 76 PQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGVHVVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L++S +K +VLDEADEML +GF DD+E IL +P+ R+ +FSAT+ AI Sbjct: 136 RVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALFSATMPSAI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +A Y +D + +A++ +I R LV+ + +A+ IL I+F T Sbjct: 196 KRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRILEAENFDGMIIFART 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L F A++G++ QQ+R +Q ++DG+ + +ATDVAARG+D+ + Sbjct: 256 KLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAARGLDVERI 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVVWE 370 VI+ ++ +PE+ HR GRTGRAGR G ++ F+ P +N+ + ER R+ +SV+ Sbjct: 316 SHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIERATRQP-ISVLE- 373 Query: 371 PAPSVEAIRE 380 PSVEA+ + Sbjct: 374 -LPSVEAVND 382 >gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309] gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309] Length = 722 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 184/596 (30%), Positives = 291/596 (48%), Gaps = 59/596 (9%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ I A+++ G+ T +Q A + P L +DV+ AQTG+GKT AFGL L + + A+ Sbjct: 51 GLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDAD 110 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 AL +APTRELA+Q + +E A+T + V + GG + L+ G Sbjct: 111 ERNVQ------ALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKRG 164 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D I L++SH++ +VLDEADEML +GF +D+E I S+P R + Sbjct: 165 AQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTAL 224 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243 FSAT+ AI +A+ + KD V+V +++E+ I +V + A+ +L Sbjct: 225 FSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQ 284 Query: 244 --------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 A AIVF TRA V + L+ F+ +SG+++Q ER ++ +++G Sbjct: 285 HIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSL 344 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 V +ATDVAARG+D+ + LV++ ++ PE +HR GRTGRAGR+G ++ R Sbjct: 345 DVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPREHGR 404 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQ------DPLFLDSIQ------GDEKKM 403 R+ + + PS A+ E A R+L+ + LD + GDE + Sbjct: 405 LRRIEKLTGTEMEEVEIPSPAAVSEFRASRLLEGLSARIERGRLDMYKRLLADLGDEISV 464 Query: 404 VDVLLA-------KHDP----EKIAAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSR 451 D+ A P EK G +I R L E + +GRD+ R Sbjct: 465 EDIAAALMATAVGDEGPAPRVEKDRRGNGKIRREEQLDESGEFVGATFEAGRDK----DR 520 Query: 452 AFKVGG-------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504 K G G R + + + VG K + + ++ + GI+ + IG I + Sbjct: 521 PLKGGANGARRRAGGRPAPGSGTRYRIEVGKKDRVKPGSIVGAIAGEGGIDGRDIGNIEI 580 Query: 505 QPDLTFVEVSAD-GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDG 559 P + V+++AD + L R I Y+ G + R + G +S +DG Sbjct: 581 YPTFSLVDITADLSSEQLSR-------ISKGYVSGRQLCIRVDEGPGGRSHGDRDG 629 >gi|257437800|ref|ZP_05613555.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii A2-165] gi|257199723|gb|EEU98007.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii A2-165] Length = 395 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 203/355 (57%), Gaps = 9/355 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I +A+ G+ +T +QE + L +DV+ A TG+GKT AFG+ +A + E Sbjct: 10 EAIHKAVERMGFAEMTEIQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVAEHIDPEK-- 67 Query: 69 FSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P A+ +APTRELA Q+ EL E Y V VA GG ++ ++ R L G I Sbjct: 68 ----KYPQAVIMAPTRELAQQIAEELTELTYFMPEVQVACVYGGANMEKQARRLAEGCQI 123 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGRL DH + ++++H+ VVLDEADEML++GF D+ I++ ++ + MFSA Sbjct: 124 VVATPGRLMDHYKHHSIDLAHVTQVVLDEADEMLNMGFYKDVRHIIELMKARKSLSMFSA 183 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 TIS + + YQ +A + + I + + ++ + + I+ G K Sbjct: 184 TISREVMDIGWLYQNNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKRV 243 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VFC T+ + + LA F V L G+LSQ+ER+ +Q RDGR + +ATDVAARG Sbjct: 244 MVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGRLAILVATDVAARG 303 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361 ID+ D++ VI+ ++ + E+ HR GRTGRA ++G+S +F +P+ ++R + L R Sbjct: 304 IDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEE-KKRVQELLR 357 >gi|167757993|ref|ZP_02430120.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704] gi|167664425|gb|EDS08555.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704] Length = 526 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 153/523 (29%), Positives = 264/523 (50%), Gaps = 45/523 (8%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE++ P+++ +A+ G+ + +Q + L KD++ AQTG+GKT AFG+ L Sbjct: 6 FEDLGLCPEIM-KAVKNMGFEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGIPLLE 64 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERR 119 + +N + A+ + PTRELA+QV E+ L + + I GG + ++ R Sbjct: 65 KIDPKNKKLQ------AIVLCPTRELAIQVAEEIRNLAKYMHAIKVLPIYGGQEIVKQIR 118 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++G +++GTPGR+ DH+R K + + ++ VVLDEADEML++GFR+DIE IL+ P++ Sbjct: 119 SLKSGTQLIIGTPGRVMDHMRRKTVKMENVHTVVLDEADEMLNMGFREDIETILEGVPEE 178 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ ++FSAT+ I + K +QK+A + + + +I+ V +++ + +L Sbjct: 179 RQTVLFSATMPKPILDITKRFQKNAELIKVTKKELTVPNIEQFYYEVKPKNKEEVLSRLL 238 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + K +++FC+T+ V L + L G++ Q +R + R G+ + + Sbjct: 239 DIYNPKLSVIFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMDGFRKGKTEILV 298 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARGID+ ++E V + +L + E +HR GRTGRAGR G S + + + + Sbjct: 299 ATDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVTGKEVYKLKEI 358 Query: 360 FREANVSVVWEPAPSVEAIRE-------RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412 R + + PS++ + RI+++ Q + ++ D D Sbjct: 359 QRYCKTKIYAQKVPSLDDVANTKMDKLMETINRIIEEEDLTTYFQMIQAEVNDSDYTSMD 418 Query: 413 PEKIAAGFLRIHRAGLCA--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 IAA L+ LC+ EE G D F D G+ + G Sbjct: 419 ---IAAALLK-----LCSGTKEE-------DGEDMFEDT--------GAEE--PGMVRLF 453 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +++G K KA+ ++ L SG+ + +G I + TFVEV Sbjct: 454 INIGKKHKAKPGDILGALAGESGLPGKVVGTIDMYDKYTFVEV 496 >gi|59800607|ref|YP_207319.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090] gi|194097783|ref|YP_002000826.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae NCCP11945] gi|239998282|ref|ZP_04718206.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02] gi|240013464|ref|ZP_04720377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18] gi|240015903|ref|ZP_04722443.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140] gi|240080042|ref|ZP_04724585.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19] gi|240112252|ref|ZP_04726742.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11] gi|240114997|ref|ZP_04729059.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18] gi|240117282|ref|ZP_04731344.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1] gi|240120536|ref|ZP_04733498.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1] gi|240122833|ref|ZP_04735789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332] gi|240125029|ref|ZP_04737915.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679] gi|240127543|ref|ZP_04740204.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|254493059|ref|ZP_05106230.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291] gi|260441187|ref|ZP_05795003.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2] gi|268594137|ref|ZP_06128304.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268596188|ref|ZP_06130355.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268598313|ref|ZP_06132480.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11] gi|268600665|ref|ZP_06134832.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18] gi|268602977|ref|ZP_06137144.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1] gi|268681449|ref|ZP_06148311.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332] gi|268683617|ref|ZP_06150479.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679] gi|268685920|ref|ZP_06152782.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|291044521|ref|ZP_06570230.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293397657|ref|ZP_06641863.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62] gi|59717502|gb|AAW88907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090] gi|193933073|gb|ACF28897.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae NCCP11945] gi|226512099|gb|EEH61444.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291] gi|268547526|gb|EEZ42944.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268549976|gb|EEZ44995.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268582444|gb|EEZ47120.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11] gi|268584796|gb|EEZ49472.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18] gi|268587108|gb|EEZ51784.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1] gi|268621733|gb|EEZ54133.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332] gi|268623901|gb|EEZ56301.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679] gi|268626204|gb|EEZ58604.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|291011415|gb|EFE03411.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611603|gb|EFF40672.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62] gi|317163562|gb|ADV07103.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae TCDC-NG08107] Length = 457 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 204/354 (57%), Gaps = 18/354 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ + VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKAEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYIHRIGRTGRAGADGVAISLMDESEQKMFE 362 >gi|255530578|ref|YP_003090950.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343562|gb|ACU02888.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM 2366] Length = 625 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 131/342 (38%), Positives = 208/342 (60%), Gaps = 18/342 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A+ + G+ N T +QE + P L E D + AQTG+GKT AFGL L + ++++ Sbjct: 17 AVKDLGFENPTPIQEQSI-PVLLEGNNDFVGLAQTGTGKTAAFGLPLLELIDFKSNK--- 72 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTREL +Q+ +++ T G V GG ++ ++ R+++NG IVV Sbjct: 73 ---PQALILCPTRELCLQITSDIKNFSKNTSGANVVAVYGGANIMQQLREIRNGVQIVVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D I K ++ +++K VVLDEADEML++GF++DI IL ++P ++ +FSAT+ Sbjct: 130 TPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKTWLFSATMP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P + +AKNY V + + ++N + +I++ +V D+ A+ I+ ++ A+VF Sbjct: 190 PEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYIVRARDKYAALKRIVDFNPEIFAVVF 249 Query: 251 CSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 C T+ T+ +AEHL + AL G+LSQQ+R +Q RD ++ IATDVAAR Sbjct: 250 CKTKLD----TQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRNMQLLIATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ ++ VI+ L E+ HRSGRTGRAG+ G+S+ ++ Sbjct: 306 GIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIV 347 >gi|308389528|gb|ADO31848.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha710] Length = 457 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKSYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|295104399|emb|CBL01943.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii SL3/3] Length = 395 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 202/355 (56%), Gaps = 9/355 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I +A+ G+ +T +QE + L DV+ A TG+GKT AFG+ + + EN Sbjct: 10 EAIHKAVERMGFAEMTEIQEKTIPLMLAGHDVIAKAPTGTGKTCAFGIPVVEHIQPEN-- 67 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P A+ +APTRELA Q+ EL L Y V VA GG ++ ++ + L G I Sbjct: 68 ----KYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQVACVYGGANMEKQAKRLAEGCQI 123 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGRL DH + ++ISH+ +VLDEADEML++GF D+ I++ ++ + MFSA Sbjct: 124 VVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKALSMFSA 183 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 TIS + + YQ +A + + I + + ++ + + I+ G K Sbjct: 184 TISREVMDIGWLYQHNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKRV 243 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VFC T+ + + LA F V L G+LSQ+ER+ +Q RDG+ + +ATDVAARG Sbjct: 244 MVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRDGKLAILVATDVAARG 303 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361 ID+ D++ VI+ ++ S E+ HR GRTGRA ++G+S +F +P+ ++R + L R Sbjct: 304 IDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEE-KKRVQELLR 357 >gi|154504732|ref|ZP_02041470.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149] gi|153794906|gb|EDN77326.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149] Length = 550 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 151/513 (29%), Positives = 256/513 (49%), Gaps = 35/513 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +A+ G+ + +Q + + KDV+ AQTG+GKT AFG+ L + +N Sbjct: 36 PEIL-KAVKHMGFEEASPIQSKAIPVIMSGKDVIGQAQTGTGKTAAFGIPLLEKIDPKNK 94 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 + A+ + PTRELA+QV E+ L AK G+ V GG + ++ R L++G Sbjct: 95 KLQ------AIVLCPTRELAIQVAEEIRNL-AKYMHGIKVLPIYGGQEIVKQIRSLKSGT 147 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+GTPGR+ DH+R K + + H+ +VLDEADEML++GFR+DIE IL+ P++ + ++F Sbjct: 148 QLVIGTPGRVMDHMRRKTMKMDHVHTIVLDEADEMLNMGFREDIETILEGIPQEHQTVLF 207 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI + K +Q +A V + + +I+ V +++ + +L + K Sbjct: 208 SATMPKAILEITKQFQTNAELVKVTKKELTVPNIEQFYYEVKPKNKEEVLSRLLDIYTPK 267 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++VFC+T+ V L + L G++ Q +R +Q R G+ + + TDVAA Sbjct: 268 LSVVFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVCTDVAA 327 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ D+E V + +L + E +HR GRTGRAGR G S + + + + R Sbjct: 328 RGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGREVYKLKEIQRYCKT 387 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIAAGF 420 + + PS+ + + +L++ D K + ++ + + +AA F Sbjct: 388 KIYAQKVPSLNDVANTKMENVLEEIE-QIIENEDLTKFLQIIEERVNESDYTAMDLAAAF 446 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 L+ SG+ + F G G +++G K KA+ Sbjct: 447 LK----------------YCSGQQETEEKDMEFGDTGAEE---AGMVRLFINIGKKNKAK 487 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++ + SGI + IG I + TFVEV Sbjct: 488 PGDIVGAIAGESGIPGKLIGTIDMFDKYTFVEV 520 >gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN] gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans PsJN] Length = 489 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 131/347 (37%), Positives = 201/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E GY T +QE + L +D++ +AQTG+GKT +F L + LL + + Sbjct: 22 ILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + AV GGV ++ + L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y ++ + +A N +++ VA D+ A+V ++R G K I Sbjct: 202 FSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQLIRERGLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ +Q ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|325953815|ref|YP_004237475.1| DEAD/DEAH box helicase [Weeksella virosa DSM 16922] gi|323436433|gb|ADX66897.1| DEAD/DEAH box helicase domain protein [Weeksella virosa DSM 16922] Length = 586 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 215/376 (57%), Gaps = 9/376 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P+++ A+ + G+V+ + +QE + L ++DV+ AQTG+GKT AFGL + + L Sbjct: 10 PEILS-AVEDMGFVSPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLPILNQLDLSQ 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 A+ + PTREL +Q+ +E+E A GV + GG + ++ + L++ Sbjct: 69 KNVQ------AIILCPTRELCLQIAKEMESFAAHMQGVKIQAVYGGADIVKQIKGLRDNP 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGR D I+ L I+++ VLDEADEML++GFRD+I+ IL+++P++++ L+F Sbjct: 123 QIVVGTPGRTMDLIKRNALKINNITWTVLDEADEMLNMGFRDEIDNILETTPEEKQTLLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + +A Y V + ++ N +I+++ +V SDR A+ I Y+ + Sbjct: 183 SATMPREVRRIAAEYMFKPVEIAVSKVNMASKNIEHQYYMVRASDRYLALKRIADYYPSI 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC TR L + + AL G+LSQ +R + R ++ +ATDVAA Sbjct: 243 YGIVFCKTRRETKEVADRLMQDGYNADALHGDLSQAQRDFVMDKFRKKNIQILVATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ +L VI+ L +PE +HRSGRTGRAG KG+S+ + R+ + + + + Sbjct: 303 RGIDVNELTHVINYSLPDDPEVYVHRSGRTGRAGNKGISIIIAHSREGRKVKDVEKFISA 362 Query: 366 SVVWEPAPSVEAIRER 381 + + PS E I ER Sbjct: 363 PIELKKVPSGEEICER 378 >gi|167764052|ref|ZP_02436179.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC 43183] gi|167698168|gb|EDS14747.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC 43183] Length = 644 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 146/413 (35%), Positives = 224/413 (54%), Gaps = 17/413 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 MK FE + P+ I A+ E GY VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSPE-IRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L + N P +L + PTREL +Q+ +L Y+K G+ V GG S+ Sbjct: 60 PLIQQINVNN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLRVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G HI+V TPGRL D + K +++S ++ VV+DEADEML++GF D I IL Sbjct: 113 ESQIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++R L+FSAT+SP I ++K Y +A + I N S++ + V D+ A Sbjct: 173 DVPQERNTLLFSATMSPEIARISKKYLHNAKEITIGRRNEGTSNVKHVVFTVHAKDKYAA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I + Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + R + P+ + I E+ +++ + L+ ++ +E ++ D + Sbjct: 353 KMREIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEIRDFM 402 >gi|15677281|ref|NP_274434.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58] gi|7226661|gb|AAF41783.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58] gi|316985805|gb|EFV64748.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis H44/76] gi|319410671|emb|CBY91048.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE 2594] gi|325128474|gb|EGC51354.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis N1568] gi|325130493|gb|EGC53250.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis OX99.30304] gi|325136534|gb|EGC59138.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M0579] gi|325140373|gb|EGC62894.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis CU385] gi|325199961|gb|ADY95416.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis H44/76] Length = 457 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906] gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906] Length = 457 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 211/363 (58%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQEA L L KDV A+TGSGKT AFGL L + A+ +F+ S Sbjct: 18 LNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAK--QFNTQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV EL L + ++ +C GGV +R L + AHI+V TP Sbjct: 75 ---LVLCPTRELADQVANELRRLARFLPNIKILTLC-GGVPFSIQRDSLIHAAHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ + + ++ +K +VLDEAD MLD+GF DDI I+ +R+ L+FSAT Sbjct: 131 GRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSAQRQTLLFSATWPDE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +++ Q+D V + I S + + ++ + ++ + + +L +H + +VFC+ Sbjct: 191 IAKISRKIQQDPVTIEINSPDELPA-VEQQFYEISRYGKLGLLQKLLSHHQPNSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L E V+AL G++ Q+ER L +G RV +ATDVAARG+D+ Sbjct: 250 TKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLVATDVAARGLDIKA 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LE+VI+ ELS +PE +HR GRT RAG G+++ F P+ + RA L N+ + W+ Sbjct: 310 LEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIP-RANALEEMLNIKLDWQS 368 Query: 372 APS 374 APS Sbjct: 369 APS 371 >gi|161870287|ref|YP_001599457.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis 053442] gi|161595840|gb|ABX73500.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis 053442] Length = 457 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 642 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 156/462 (33%), Positives = 248/462 (53%), Gaps = 24/462 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 22 KAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 79 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 80 ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P+KR++ +FSAT+ P Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A+ + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 256 RTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIERATRQPIEEMQ 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLR 422 PSV+A+ + R + +++ G + +M LL +++ E IAA + Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIEMYRDLLQRYESENNVPAIDIAAAMAK 430 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464 + + AP +TP + R+ F R + G R F+ Sbjct: 431 LLQGN--APFLLTP-PVRGAREDFAPRERNDRADRGERPRFE 469 >gi|163802622|ref|ZP_02196513.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4] gi|159173510|gb|EDP58330.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4] Length = 459 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 208/375 (55%), Gaps = 7/375 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L Y ++T +Q L L ++DV+ +TGSGKT AFGL + S L + R Sbjct: 17 ETLESLNYTHMTPIQALSLPVILNQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +L + PTRELA QV +E+ L + V GG+ + + L++GAHI+VGT Sbjct: 75 ----SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ +N+ L +VLDEAD MLD+GF+D ++ I+D++PK+R+ L+FSAT Sbjct: 131 PGRILDHLDKGRINLEELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTLLFSATFPK 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + + S + S + + + RD A+ N+L H ++A+VFC Sbjct: 191 KIEQIAQRIMRSPEMIKVESTHDTSSIVQHFYKVEGTEARDEALANLLLTHQPESAVVFC 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V L F V+ L G+L Q+ER AL + + +ATDVAARG+D+ Sbjct: 251 NTKKEVQNVADELHHKGFSVIELHGDLEQRERDQALTQFANKSVSILVATDVAARGLDVD 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +L+ V + ELS +PE +HR GRTGRAG KG++ + R R+ ++ VV Sbjct: 311 NLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLDMDVVPAT 370 Query: 372 APSVEAIRERDAQRI 386 P+ ++ A+ + Sbjct: 371 LPAKSNLQPYQAKMV 385 >gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus JA2] gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus JA2] Length = 483 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 134/343 (39%), Positives = 198/343 (57%), Gaps = 2/343 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPA 72 A+++ GY +T +Q + L +DV+ +AQTG+GKT AF + L +L EN SPA Sbjct: 31 AVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQKMLRHENTSMSPA 90 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL +APTRELA QV ++ T + AV GGV + + +L+ G +++ T Sbjct: 91 RHPVRALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQTAELKAGVEVLIAT 150 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI + ++ ++ VVLDEAD MLD+GF D++ IL PK R+ L+FSAT SP Sbjct: 151 PGRLLDHIEARNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSFLPKTRQTLLFSATFSP 210 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA +Y +D V V +A N S ++ R V D+ + ILR AIVF Sbjct: 211 EIKRLAGSYLQDPVTVEVARPNATASTVEQRFYGVGDDDKRATVRQILRQRELSQAIVFV 270 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +++ +R + + AL G+ SQ ER AL + G + +ATDVAARG+D+ Sbjct: 271 NSKLGAARLARSFERDGLKTQALHGDKSQDERLKALAAFKAGEVDLLVATDVAARGLDIA 330 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 DL V + ++ N E+ +HR GRTGRAG G++V ++ ++ R Sbjct: 331 DLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVTRDDTR 373 >gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] Length = 561 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 167/520 (32%), Positives = 263/520 (50%), Gaps = 34/520 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALS GY T +Q + P +D+L A TG+GKT AF L + L R Sbjct: 24 ALSGLGYEEPTPIQREAIVPLTEGRDLLGQAATGTGKTAAFALPVLERLAQVEKR---GD 80 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AP AL + PTRELAVQV + + G V GG + R+ R L+ G +VV TPG Sbjct: 81 APFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQPIGRQLRVLERGVDVVVATPG 140 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R DH+ LN+ L+ VVLDEADEMLD+GF +D++ IL +PK+R+ ++FSAT+ P I Sbjct: 141 RAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTILAETPKQRQTVLFSATMPPRI 200 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 LA+ + + R+ I E + + + A +V + + A+ +L AIVF Sbjct: 201 DKLARQHLTEPARITINQERAEPGEAPRVRQVAYVVPRAHKPAALGRVLDVEAPTAAIVF 260 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TR V + T+ L ++ +L G +SQ++R + +R+G A + +ATDVAARG+D+ Sbjct: 261 CRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMARLRNGTADLLVATDVAARGLDV 320 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367 L V++ + S PE+ +HR GR GRAGR+G+++ + M + ER+ ++ + Sbjct: 321 EQLTHVVNYNVPSAPESYVHRIGRVGRAGREGVAITLAEPREHGMLKTIERVTKQ---RI 377 Query: 368 VWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI- 423 E P+V +R R + L + L D ++G + +V+ L + D ++A +++ Sbjct: 378 TMEKVPTVADLRARRLELTRAALHESLLEDELEGF-RVVVESLSDEFDVMEVALAAVKLA 436 Query: 424 HRA-GLCAPEEITPVSL---------VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 H A G A EE P V+G D R + R R G + + Sbjct: 437 HEASGAAADEEEIPEVAHRSDRSRGGVAGSDGQRRERRV-------RPPTAGMTRLFVGA 489 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 G + ++ + + + + IGAI + + VEV Sbjct: 490 GRSSGIRPQDIVGAIAGEARLQGRDIGAIEITDRFSLVEV 529 >gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens MI-1] Length = 482 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 153/474 (32%), Positives = 242/474 (51%), Gaps = 33/474 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + E++ G+ T +QE + L D++ A TG+GKT AFG+ + + D Sbjct: 13 VSESIKLMGFEEATPIQEKAIPIALSGGDLIGQAHTGTGKTAAFGIPMVERFSRQQDTIQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L I PTRELAVQV E+ + G+ GG ++R+ R L+ HI+VG Sbjct: 73 ------GLIITPTRELAVQVAEEMNRIGQVKGIHTLPVYGGQDINRQIRALKKKPHIIVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K + ++ L VVLDEADEML++GF +DIE IL P++R+ L+FSATIS Sbjct: 127 TPGRLMDHMKRKTIRLNELTMVVLDEADEMLNMGFIEDIEEILQQVPEERQTLLFSATIS 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ + K+ + I ++ ID V V + + L AIVF Sbjct: 187 KPIQELARRFLKNPEFIAIKAKEVTVPSIDQSYVEVQEKQKFEVLSTFLDIQSPDLAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V + L++ + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVLVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSV 367 + V + ++ +PE+ +HR GRTGRAG+KG ++ FV P+ M R ER+ + + Sbjct: 307 SGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGEAITFVTPREMNHLRLIERITKH---KI 363 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAKHDPEKIAAGFLRIH 424 P P+++ + E QR+ + L +G +++ + LL + D + A LR+ Sbjct: 364 SRRPIPTIKEVIE-GQQRLAVEKLLKVVEEGGFEHYRRLAEDLLIEQDAATLVAAALRM- 421 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAF-------------KVGGGSRDNFKG 465 + + TPV L R + +F K+ G R FKG Sbjct: 422 ---ITKEPDRTPVQLTEERPLRSKKAESFQPRMRKPYKDNRGKIEGKKRGEFKG 472 >gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis DSM 14884] gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis DSM 14884] Length = 517 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/366 (39%), Positives = 204/366 (55%), Gaps = 30/366 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +AL ERG+ LT VQ A L L +DV+ A+TG+GKT+AF L +A +R Sbjct: 12 VQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIA-------ERLE 64 Query: 71 PASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 PA A P AL +APTRELA+QV EL+W A + V GG ++ + L+ G Sbjct: 65 PARAKGRAPRALVLAPTRELALQVAGELDW--AAPHLEVLTVYGGTGYGQQAQALRRGCD 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VV TPGR D++R L+++ ++ VVLDEADEML +GF +D+E +L ++ R+ L+FS Sbjct: 123 VVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSARQTLVFS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNAIVNILRYHGA 244 AT+ LA+ + KD N+ + + YR A+ + R + ++L +GA Sbjct: 183 ATMPSWARRLAERHLKDPFVANLVKDE----AVTYRELAIEAPTATRIAVLSDVLHAYGA 238 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AIVF T+A LA A+ G+LSQ R + R G RV +ATDVA Sbjct: 239 GRAIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRVLVATDVA 298 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----------IPQNMQ 353 ARG+D+P++ELV+H L E HRSGRTGRAGR G V + + + ++ Sbjct: 299 ARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAGRTGTVVLLYGPRERRTVADLERALR 358 Query: 354 RRAERL 359 RR ERL Sbjct: 359 RRFERL 364 >gi|110598397|ref|ZP_01386670.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans DSM 13031] gi|110340006|gb|EAT58508.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans DSM 13031] Length = 598 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 166/524 (31%), Positives = 263/524 (50%), Gaps = 37/524 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL E GY N T +Q + L +DVL AQTG+GKT AF L + S N R + A Sbjct: 22 QALEEVGYENPTPIQAETIPLLLEGRDVLGQAQTGTGKTAAFALPVLS-----NIRLALA 76 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV + + G V GG + R L+ G H+VVGT Sbjct: 77 E-PQALVLAPTRELAIQVAEAFQRYAVHLKGFHVVPIYGGQDYGIQLRMLKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R LN+ L+ +VLDEADEML +GF DD+E+ILD +PK R++ +FSAT+ Sbjct: 136 PGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILDQTPKDRQVALFSATMPS 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y + +V I ++ I R +V S + + + IL ++F Sbjct: 196 AIRRIAQKYLNNPAQVTIQTKTTTVETIRQRYWIVGGSHKLDILTRILEVEPFDGILIFV 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + AL+G+++Q +R + +++G + IATDVAARG+D+ Sbjct: 256 RTKTMTIELAEKLQARGYGAAALNGDMAQNQRERTVDQLKNGALSIVIATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + VI+ ++ S+ E+ +HR GRTGRAGR G ++ + + + + + + Sbjct: 316 RISHVINYDIPSDTESYVHRIGRTGRAGRTGDAILFVSPREKNMLYAIEKATHSRIELME 375 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD-PEKIAAGFLRIHRA 426 PS E I + + Q D+I ++ ++++ +HD P AA L A Sbjct: 376 LPSTEIINNKRIAKFNQK--ITDTIAAEDLDFFTRIIEQYCHEHDVPVIEAAAAL----A 429 Query: 427 GLCAPEEITPVSLVSGRDRFR--DDSRAFKVGGGS---------------RDNFKGSSWF 469 L E TP+ L + ++ R DD GS R + +G + Sbjct: 430 SLVQGE--TPLLLSNKPEKTRSHDDREGSGRDRGSDRDRGFDRDRGPSKRRSSDEGKERY 487 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 L VGS+ +A ++ + G++ S+G I + + VE+ Sbjct: 488 RLEVGSEHGVKAGNILGAILNEVGLDPDSVGQISINDSYSTVEL 531 >gi|304387245|ref|ZP_07369442.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC 13091] gi|304338733|gb|EFM04846.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC 13091] Length = 457 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|299142021|ref|ZP_07035155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris C735] gi|298576483|gb|EFI48355.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris C735] Length = 625 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 165/527 (31%), Positives = 262/527 (49%), Gaps = 21/527 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE + + I A+ E G+ + VQE ++ L K DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHR 116 L + A+N A A+ ++PTREL VQ+ +L ++ G+ + GG + Sbjct: 61 LLQKVDAQN------RATQAIVLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRP 114 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + R +++G I+V TPGRL D I + ++ + VVLDEADEML++GF D I I + Sbjct: 115 QIRTIKHGVQIIVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQL 174 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 P R L+FSAT+S + +AK+Y D + + S N +++ LV D+ A+ Sbjct: 175 PDDRNTLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIYYLVHSKDKYLALK 234 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 I+ +H AI+FC T+ L + + AL G+LSQQ+R +Q R + Sbjct: 235 RIVDFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQ 294 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 + +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+KG S+ +I + + Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKV 354 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DP 413 ++ ++ + P E I ++ +++ D + D + +D ++ + D Sbjct: 355 RQIEKQIGKDFIDGELPKPEEICKKQLYKVMDDIMKTDVDEDQIAPYMDDIMRQFEYVDK 414 Query: 414 EKI-----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468 E I F R APE P++ R D S KV G R + S + Sbjct: 415 EDIIKKMVTVTFGRFLDYYKHAPEIEKPMAGKGSRSERGDRSMRGKVSSGRRQHVAESGY 474 Query: 469 --FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +++G +M L + RQ +G I + +++EV Sbjct: 475 RRLFINLGKSDGFYPGEIMQYLNKHVH-GRQEVGHIDLLQKFSYIEV 520 >gi|300770793|ref|ZP_07080671.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33861] gi|300762350|gb|EFK59168.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33861] Length = 603 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 166/527 (31%), Positives = 266/527 (50%), Gaps = 44/527 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVS-AQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+SE G+ + +QE + L D V AQTG+GKT AFGL L L FS Sbjct: 16 AISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPLLEQL-----DFS-Q 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTREL +Q+ ++LE +AK GV V GG ++ + R ++ G IVV Sbjct: 70 KHPQALVLCPTRELCLQIAKDLEK-FAKYIDGVHVVAVYGGANISDQLRQIRRGVQIVVA 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D I ++ S++K VVLDEADEML++GF++DI IL +P++++ +FSAT+ Sbjct: 129 TPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKTWLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +A+NY D V + + ++N +++I++ L+ D+ A I+ + IVF Sbjct: 189 REVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAKDKYAAFKRIVDSNPEIFGIVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ + L + + +L G+LSQQ+R ++ RD ++ IATDVAARGID+ Sbjct: 249 CRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATDVAARGIDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF---------------VIPQNMQRR 355 D+ VI+ L EN HRSGRT RAG+ G+S+ +I + +R+ Sbjct: 309 NDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHIEKIIGKPFERK 368 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415 E ++ +E + D Q P +++++ L+K D Sbjct: 369 QVPQGAEVCEKQLFSIVSKIENVEVNDDQITPFLPAIMENLEA---------LSKED--- 416 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDR---FRDDSRAFKVGGGSRDNFKGSSWFSLS 472 I F + + P + RD R D R + GGS KG + ++ Sbjct: 417 IIKRFASLEFNRFLDYYKNAPDLNIEARDNERGERGDRREDRSRGGS----KGYTRLFMN 472 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 +GS + ++ +C ++ I+ +SIG I ++ TF EV + V+ Sbjct: 473 LGSVDEFTRGDMLGFICNNAKISGKSIGKIDLKGVFTFFEVQDEEVE 519 >gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296] gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296] Length = 744 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 166/520 (31%), Positives = 263/520 (50%), Gaps = 29/520 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY + +QE + L DV+ AQTG+GKT AF L S + D + Sbjct: 80 ALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMAELADVNGISR 139 Query: 74 APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA+QV + V GG + L+ GA +VVGTP Sbjct: 140 DTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVVGTP 199 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++S+L+ +VLDEADEML +GF +D+E IL+ +P +++ +FSAT+ + Sbjct: 200 GRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVALFSATMPNS 259 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ Y D + + ++ ++I R + V S + +A+ +L IVF Sbjct: 260 IRKIAQQYLNDPTEIRVKAKTTTSANISQRYMQVMHSHKLDAMTRVLEVENYDGIIVFVR 319 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L F A++G++ QQ R + +RDGR + +ATDVAARG+D+ Sbjct: 320 TKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARGLDVER 379 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVW 369 + LV++ ++ + E+ +HR GRTGRAGR+G ++ FV P+ M R+ E+ R+ Sbjct: 380 ISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKATRQK-----V 434 Query: 370 EP--APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--EKIAAGFL 421 EP P+ EA+ E QR Q ++I+ ++ +++++ +HD E IAA Sbjct: 435 EPMHMPTAEAVNETRKQRFAQQ--ITETIESEDLSFFRQIIEDYENEHDTTAEDIAAALA 492 Query: 422 RIHRAG----LCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476 I + G L E+I S S D R +A + N +G + L+VG Sbjct: 493 VIAQQGRPFFLDESEDIAHKSRPFSDEDSDRGGRKAKRA-----HNDEGMVNYKLNVGRS 547 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + A ++ L GI IG+I ++ T V + D Sbjct: 548 SRVTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPED 587 >gi|160944592|ref|ZP_02091819.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii M21/2] gi|158443776|gb|EDP20780.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii M21/2] Length = 435 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 202/355 (56%), Gaps = 9/355 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I +A+ G+ +T +QE + L DV+ A TG+GKT AFG+ + + EN Sbjct: 50 EAIHKAVERMGFAEMTEIQEKTIPLMLAGHDVIAKAPTGTGKTCAFGIPVVEHIQPEN-- 107 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P A+ +APTRELA Q+ EL L Y V VA GG ++ ++ + L G I Sbjct: 108 ----KYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQVACVYGGANMEKQAKRLAEGCQI 163 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGRL DH + ++ISH+ +VLDEADEML++GF D+ I++ ++ + MFSA Sbjct: 164 VVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKALSMFSA 223 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 TIS + + YQ +A + + I + + ++ + + I+ G K Sbjct: 224 TISREVMDIGWLYQHNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKRV 283 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VFC T+ + + LA F V L G+LSQ+ER+ +Q RDG+ + +ATDVAARG Sbjct: 284 MVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRDGKLAILVATDVAARG 343 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361 ID+ D++ VI+ ++ S E+ HR GRTGRA ++G+S +F +P+ ++R + L R Sbjct: 344 IDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEE-KKRVQELLR 397 >gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans DSM 20731] gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans DSM 20731] Length = 544 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 160/515 (31%), Positives = 265/515 (51%), Gaps = 27/515 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I AL E G+ + +Q+ + L +D++ AQTG+GKT AFG+ + + E Sbjct: 25 NLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIPIIQKI-NE 83 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 DR A L ++PTREL +QV E+ + + V GG + R+ R L+ G Sbjct: 84 KDRHIQA-----LVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRSLKRGI 138 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+GTPGRL DHIR +++ ++ +VLDEADEMLD+GF DD+E I+ + P +R+ ++F Sbjct: 139 QVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTMLF 198 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +++K Y + V I E ID D+ + + IL Sbjct: 199 SATMPRPILSISKKYMRAPKVVAIHKEVVTAPTID--QYYYETRDKVDGLCRILDTTDDC 256 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+FC T+ V LA ++ L G+LSQ +R ++ R G+ + +ATDVAA Sbjct: 257 KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVAA 316 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ ++ V++ ++ S+ E+ +HR GRTGRAG G+++ F+ P+ R+ + + R Sbjct: 317 RGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREF-RQLKLIERSIK 375 Query: 365 VSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 ++ P+ ++ ER ++I +Q L D Q D +V+ L +D + IAA L Sbjct: 376 TKIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQ-DYLPIVETLEKDYDVQDIAAAAL 434 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481 + + G A EE P S D G++ G +++G + Sbjct: 435 KFMQEGAKALEE--PAEEESLPDAL--------ANTGAK---PGMVRLFVNIGRSSRVTV 481 Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 R ++ + + I +SIG I + +FVEV + Sbjct: 482 RDIVQSIAIEAEIPARSIGRISIYDKFSFVEVPME 516 >gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv. campestris str. B100] gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv. campestris] Length = 642 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 156/462 (33%), Positives = 248/462 (53%), Gaps = 24/462 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 22 KAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 79 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 80 ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P+KR++ +FSAT+ P Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A+ + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 256 RTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIERATRQPIEEMQ 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLR 422 PSV+A+ + R + +++ G + +M LL +++ E IAA + Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIEMYRDLLQRYESENNVPAIDIAAAMAK 430 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464 + + AP +TP + R+ F R + G R F+ Sbjct: 431 LLQGD--APFLLTP-PVRGAREDFAPRERNDRADRGERPRFE 469 >gi|296314358|ref|ZP_06864299.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC 43768] gi|296838913|gb|EFH22851.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC 43768] Length = 457 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 205/354 (57%), Gaps = 18/354 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GGV++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ PK+R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV + T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 IPQVIVFCKTKQSVDQVTRDLIRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E Sbjct: 309 AARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 362 >gi|227499384|ref|ZP_03929495.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098] gi|227218446|gb|EEI83689.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098] Length = 553 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 136/377 (36%), Positives = 212/377 (56%), Gaps = 9/377 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E NI + I +A+ + GY N + +QE + L +DV+ AQTG+GKT AF + L Sbjct: 15 MKFNEFNIGEDILQAIDDMGYTNPSPIQEETIQYLLDGRDVIGQAQTGTGKTAAFAIPLV 74 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118 + A ND +L + PTREL +QV RE+E L K + V GG + ++ Sbjct: 75 ENVEA-ND------ITQSLILCPTRELCMQVAREVEKLTKYKKDIKVLALYGGTQIVKQI 127 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ GA IVVGTPGR+ D ++ + L + LK VVLDEADEM D+GFRDD++ ILD++ Sbjct: 128 KALEKGAEIVVGTPGRVIDLMKRRVLKLDMLKNVVLDEADEMFDMGFRDDMKVILDATNP 187 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ FSAT+ +K YQ + ++ I ++ ID + + + ++ + + Sbjct: 188 QRQTCFFSATMGKEFAEFSKLYQNNPQKIVIKADEVTVEKIDQYYIKLKEAMKEETLTRL 247 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + K AIVFC+T+ V + + L + + V L G+L Q R ++ R+ ++ Sbjct: 248 LEINNPKLAIVFCNTKRKVDKLVEELTKKSYLVDGLHGDLKQSARDQVMKKFRNKTIQIL 307 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 IATDVAARG+D+ D++LVI+ +L E +HR GRT RAG+ G+S +I + R Sbjct: 308 IATDVAARGLDIDDVDLVINYDLPQLDEYYVHRIGRTARAGKSGVSYSLIAGRDRDRLRA 367 Query: 359 LFREANVSVVWEPAPSV 375 + + + P PS+ Sbjct: 368 IEKYTKADIKEIPIPSL 384 >gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] Length = 536 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 152/433 (35%), Positives = 239/433 (55%), Gaps = 22/433 (5%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 MK F + P+V+ +A++E G+ T +Q + L +D++ AQTG+GKT AFGL Sbjct: 1 MKNFADFGLEPRVL-QAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLP 59 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L + E +R ++L + PTRELA+QV E+ L G+ GG + R+ Sbjct: 60 LIHKIAKEEERI------VSLIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQ 113 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R L+ I++GTPGRL DHI K + + ++ VVLDEADEMLD+GF +DI+ IL P Sbjct: 114 IRALKKKPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVP 173 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 ++R+ L+FSAT+ I LA + KD V++ ++ ID + V + A+ Sbjct: 174 EERQTLLFSATMPANIQKLASQFLKDPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSR 233 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L + AIVF T+ V + L + + L G+LSQ +R ++ RDG V Sbjct: 234 LLDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDV 293 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA 356 +ATDVAARG+D+ + V++ +L +PE+ +HR GRTGRAG++G + FV P+ M Sbjct: 294 LVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLY 353 Query: 357 --ERLFREANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAK 410 ER+ R + +P P++ EAI + QRI+ + + QG + K + LL + Sbjct: 354 FIERVTRH---RIPRKPLPTIAEAIEGK--QRIIAERVLEIIEQGELTEYKGLAIQLLEQ 408 Query: 411 HDPEKIAAGFLRI 423 +D ++ A ++I Sbjct: 409 YDSVQLLAAAMKI 421 >gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 640 Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 144/406 (35%), Positives = 226/406 (55%), Gaps = 15/406 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 22 KAVANVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQLKPQ 79 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 80 ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P+KR++ +FSAT+ P Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 196 AICRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 256 RTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +S+ G + M LL +++ E Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITESLAGGQIDMYRDLLQRYETE 416 >gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 578 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 171/551 (31%), Positives = 285/551 (51%), Gaps = 43/551 (7%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ + LSE GY + +Q + P L DV+ AQTG+GKT AF L + S L + Sbjct: 11 PRVL-QVLSEIGYETPSPIQAQTIPPLLEGHDVMGLAQTGTGKTAAFALPILSRLDLD-- 67 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126 A P AL +APTRELA+QV + A G V GG S + L+ GAH Sbjct: 68 ----AKTPQALVLAPTRELAIQVAEAFQRYAAHLPGFHVLPIYGGQSYGPQLAGLKRGAH 123 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L+++ LK +VLDEADEML +GF +D+E IL S P++R++ +FS Sbjct: 124 VVVGTPGRVIDHLNKGSLDLTGLKNLVLDEADEMLRMGFIEDVETILQSVPEQRQVALFS 183 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I ++++Y + V +++ ++ ++I R + V + +A+ IL Sbjct: 184 ATMPPQIRKISQSYLNEPVEISVKTKTTTATNITQRYIPVRGPAKLDALTRILEVETFDA 243 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + L F A++G++ Q R + +R+GR + +ATDVAAR Sbjct: 244 MIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILVATDVAAR 303 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREA 363 G+D+ + V++ ++ + E+ +HR GRTGRAGR G ++ FV P ++M R E+ R+ Sbjct: 304 GLDVERISHVLNYDIPHDSESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSIEKATRQ- 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 S+ PS+EA+ ++ + Q D++ + ++ L+ +++ R Sbjct: 363 --SIGQMELPSIEAVNDQRLAKFAQG--ITDTLAKGDLELFKGLVEEYE---------RT 409 Query: 424 HRAGLCAPEEITPVSLVSG-------RDRFRDDSRAFKVGGGSRDNFKGSS----WFSLS 472 H S+V G R+ + +R + GG ++ F+ +S + + Sbjct: 410 HDVPAAE-IAAALASMVQGDQPLLMEREPEPEPNRRGRDGGAAK--FQPTSSDTETYRVE 466 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLD 528 VG + + L+ L G+ + IG I ++ T +E+ AD D LR+T Sbjct: 467 VGRRNRVTPSALVGALANEGGLPSKHIGHIDIRDGHTLIELPADLPDDMLRKLRKTQVAG 526 Query: 529 KGIQLKYLGGE 539 +G+++ GE Sbjct: 527 RGLRISLADGE 537 >gi|254672936|emb|CBA07321.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha275] Length = 489 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|325134358|gb|EGC57003.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M13399] gi|325144657|gb|EGC66955.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240013] gi|325205823|gb|ADZ01276.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M04-240196] Length = 457 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|108759595|ref|YP_632093.1| RNA helicase DeaD [Myxococcus xanthus DK 1622] gi|108463475|gb|ABF88660.1| RNA helicase DeaD [Myxococcus xanthus DK 1622] Length = 602 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 170/521 (32%), Positives = 265/521 (50%), Gaps = 24/521 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EALS GY T +Q A L P L KD+L A TG+GKT AF L L + + R + Sbjct: 57 EALSALGYEEPTPIQAAALPPLLAGKDLLGIAATGTGKTAAFALPLLNHVEPGACRPNTT 116 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 SA L + PTRELA+QV + K G+ V GG + ++ R L+ G +VV TP Sbjct: 117 SA---LVLVPTRELAMQVSEAIHRYGQKLGISVLPLYGGQVIGQQLRVLKRGVDVVVATP 173 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR DH+R L + ++ VVLDEADEMLD+GF +D+E IL +P+ R+ +FSAT+ P Sbjct: 174 GRALDHLRRGTLQLDDVRVVVLDEADEMLDMGFAEDLEAILSGTPEDRQTALFSATLPPR 233 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I ++A+ + + VRV IA E + +I A +V + + + +L AI+ Sbjct: 234 IASIAERHLHEPVRVKIAREKVEQGEIPRVRQTAYVVPRAFKIATLGRLLDVESPTAAII 293 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC TR V T L ++ AL G ++Q++R ++ ++ + +ATDVAARG+D Sbjct: 294 FCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQGTDLLVATDVAARGLD 353 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 +P L V++ ++ + PE +HR GRTGRAGR+G+++ ++ R + R + Sbjct: 354 IPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIERVTGQRIEV 413 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE---KKMVDVLLAKHDPEKIAAGFLR-IHR 425 P+V +RE+ Q +L+ L + G+ + +V+ L ++ D IAA ++ +H Sbjct: 414 ATVPTVADMREKR-QEMLRASLRETLVTGEYDSLRNVVESLASEFDAMDIAAAAVKLLHE 472 Query: 426 A---GLCAPEEITPVSLVSGRDRFRDDSRAFKVG------GGSRDNFKGSSW--FSLSVG 474 A G E PV R R G G + +W L +G Sbjct: 473 AQDEGRDTEETEIPVVAPPQERRERTGKFGAPTGRPGRPERGPKARGGPPTWDVTRLWIG 532 Query: 475 SKQKAEARW--LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + A R L+ + +G+ IGAI++ + VEV Sbjct: 533 AGRHAGVRPADLVGAIAGEAGVESSKIGAIQIGDAFSLVEV 573 >gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 589 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 174/564 (30%), Positives = 280/564 (49%), Gaps = 49/564 (8%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73 L + GY +++Q A + L +DV+ AQTG+GKT AF L + S L L++ Sbjct: 32 LKDVGYETPSAIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPILSRLDLSQK------- 84 Query: 74 APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +P AL +APTRELA+QV E + GV + GG + L+ G HIVVGTP Sbjct: 85 SPQALVLAPTRELALQVAEAFESYATHLKGVHLLPVYGGQGYGVQLSALRRGVHIVVGTP 144 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++S LK +VLDEADEML +GF +D+E IL +P +++ +FSAT+ Sbjct: 145 GRIMDHLDKGTLDLSGLKHLVLDEADEMLKMGFAEDVEKILADTPDDKQVALFSATMPAQ 204 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++K Y D V + + ++ R ++V+ S + +A+ IL + IVF Sbjct: 205 IRRISKKYLHDPEEVTVKARTTTSANTTQRYLVVSYSQKVDALTRILEVENFEAMIVFVR 264 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + A+SG+++Q +R + ++ G+ + +ATDVAARG+D+ Sbjct: 265 TKNETETLAERLRARGYSAAAISGDVAQAQRERTVGQLKSGKLDILVATDVAARGLDVDR 324 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V++ ++ + E+ +HR GRTGRAGR G ++ + +R + + + P Sbjct: 325 ISHVVNFDIPVDTESYVHRIGRTGRAGRSGAAISFVTTRERRLLTAIEKATRQPLTPMPL 384 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD-PEKIAAGFLRIHRAG 427 PSV+ + R D + Q D + ++ +A HD PE A L + G Sbjct: 385 PSVDDVNVTRLAR-FDDAITSALAQQDRISRFRDIIAHYVAHHDVPEADVAAALAVVAQG 443 Query: 428 -----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------------FKGSSWF 469 L A + +T R D+R ++ RD+ ++ + + Sbjct: 444 EEPLLLSADDALT--------QRIERDARDDRLARAGRDDRGRGERPVRRDRGYRPMAPY 495 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD--GVDLLRRTVKL 527 + VG +Q+ E R ++ L G++R G IR+ PD + VE+ AD G L R T Sbjct: 496 RIEVGKRQRVEPRQIVGALANEGGLSRDDFGHIRIMPDFSIVELPADLPGDTLARLTGTR 555 Query: 528 DKG--IQLKYLGG----EKPDFRG 545 G I+L+ G KPD RG Sbjct: 556 ISGKLIELRPDRGAGARRKPDERG 579 >gi|330808371|ref|YP_004352833.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376479|gb|AEA67829.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 557 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 170/552 (30%), Positives = 287/552 (51%), Gaps = 33/552 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P ++ A++ GY +++Q+ + + D++ AQTG+GKT AF L + Sbjct: 11 FNLNPNILA-AVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILH--- 66 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R PA P AL +APTRELA+QV E Y+K GV V GG + + + Sbjct: 67 ----RIDPAKREPQALILAPTRELALQVATAFET-YSKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R + ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FK 464 +AA LR G L A E+ P+ + R + + G R+ + Sbjct: 419 ALAAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPIPLAE 478 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTK 538 Query: 525 VKLDK--GIQLK 534 +K + G QLK Sbjct: 539 LKDTRVAGKQLK 550 >gi|108763335|ref|YP_634008.1| DEAD-box ATP dependent DNA helicase [Myxococcus xanthus DK 1622] gi|5668905|gb|AAD46062.1| DEAD-box protein [Myxococcus xanthus] gi|108467215|gb|ABF92400.1| ATP-dependent helicase, DEAD/DEAH-box family [Myxococcus xanthus DK 1622] Length = 808 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 133/343 (38%), Positives = 194/343 (56%), Gaps = 11/343 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I AL+ERGY N T VQ P + KD++V ++TG+GKT AFGL L + A+ Sbjct: 35 NLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLEKIPAD 94 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R AL + PTRELA+QV EL+ L G+ +A GG S+ ++ L+ G Sbjct: 95 ERRVR------ALILCPTRELALQVADELKMLAKHKGLKIAAIYGGASMKQQEDALEEGT 148 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DHI L + VLDEADEML+ GF +++ ILD PK R++L+F Sbjct: 149 PIIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLLF 208 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYH 242 SAT+ I L Y +A + ++ + I + + +SD + ++ +L Sbjct: 209 SATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHH--IRYDVSDAFPKPRNLIYVLEKE 266 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +NAI+FC+TR + T VL + F L+G+L Q+ER + ++ G +ATD Sbjct: 267 EPQNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVATD 326 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +AARGID+ LE VI+ L +P LHR GRTGR G KG ++ Sbjct: 327 IAARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAI 369 >gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061] gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii DSM 2375] gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM 2374] gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061] gi|222434510|gb|EEE41675.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii DSM 2375] gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM 2374] Length = 429 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 123/336 (36%), Positives = 193/336 (57%), Gaps = 9/336 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +++ E G+ + +QE + L+ D++ AQTG+GKT+AF + L + F Sbjct: 15 IKKSIKEMGFEEPSPIQELTIPEALKGIDIIGQAQTGTGKTLAFTVPLLQKI------FI 68 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P ++P A+ + PTREL +QV E+ + + K ++ V GG + R+ R L G H+V Sbjct: 69 PDNSPQAIVLCPTRELCIQVAGEIGKIGSHMKKLKILPVY-GGQPIGRQIRVLNKGVHVV 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 +GTPGR+ DHI K L++ + VVLDEADEMLD+GFR+DIE IL +PK+R+ L+FSAT Sbjct: 128 IGTPGRVLDHIERKTLDLKGISTVVLDEADEMLDMGFREDIEKILRHTPKQRQTLLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I + K YQK + +A +I D+ + ++ + + Sbjct: 188 MPKEIKRITKFYQKKPKHLKVAQSQMTVPEITQYYFETKEKDKLENLTRLIDVYDVNLGL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+T+ V K L + + G+++Q+ R + R+G + IATDVAARGI Sbjct: 248 VFCNTKKRVDWVAKNLRNRGYAAEGIHGDMNQKSRDKVMNKFRNGNIEILIATDVAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 D+P++E+V++ ++ NPE +HR GRTGRAG G + Sbjct: 308 DVPNVEVVVNYDVPQNPEYYVHRIGRTGRAGNMGYA 343 >gi|313159432|gb|EFR58795.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp. HGB5] Length = 653 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 166/527 (31%), Positives = 277/527 (52%), Gaps = 41/527 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A+ +G+ T++Q+ + P L K D++ +QTG+GKT A+GL + +L P Sbjct: 19 AVRAKGFETPTAIQKLTI-PHLLTKTNDIIAQSQTGTGKTAAYGLPILQSL-------EP 70 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P+ A+ + PTRELA+Q EL + + + GG ++ + R L G IVVG Sbjct: 71 ARGPVQAIILVPTRELALQAAEELLSYNREKRLSITAIYGGAAMSEQLRRLAKGVDIVVG 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHIR L + +++ +VLDEADEML++GF +D+E I+ + ++RR+L+FSAT+ Sbjct: 131 TPGRVRDHIRRGTLKLENVRYLVLDEADEMLNMGFVEDVEEIMSHTSEERRVLLFSATMP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQ-HSDIDYRAVL-VALSDRDNAIVNILRYHGAKNAI 248 I L+K Y +D V + EN+Q +D+ + V +D+ +A+ I+ I Sbjct: 191 ERIIRLSKTYMRDTEIVRV--ENKQLTTDLTEQIYFEVREADKFDALTRIIDVEPEFYGI 248 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ LA + L G++SQ +R L+ RD + +ATDVAARGI Sbjct: 249 IFARTKIGADETVSRLAARGYAAEVLHGDVSQAQREKILRKFRDRSVNILVATDVAARGI 308 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ +L VI+ L + E+ +HR GRTGRAG++G ++ + + R L R+ V + Sbjct: 309 DVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLNNLMRDIKVEIK 368 Query: 369 WEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI-H 424 E PS + I E +I +Q+ + +S G ++ + LLA++ P+ LR+ Sbjct: 369 RETLPSPQDIVEMKRLKIKDEMQEIVENESYDG-YREFAEELLAEYTPDVALGALLRLAF 427 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 R+ L D S ++ S D KG++ L+VG + AR L Sbjct: 428 RSEL-------------------DQSNYPEIRSFSVDR-KGTARLFLAVGRRDGYTARKL 467 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVS-ADGVDLLRRTVKLDKG 530 + ML G+ + I +++ + +FV V D +++R+ +L++G Sbjct: 468 VDMLKFKCGLRDKYINDVQISDNFSFVSVPFHDAEEIVRKLNRLNRG 514 >gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684] gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM 14684] Length = 590 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 205/375 (54%), Gaps = 13/375 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71 +AL+ GY T +Q + P L +D+L A TG+GKT AF L + R P Sbjct: 28 DALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPILQ-------RMEPG 80 Query: 72 --ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A PLAL + PTRELAVQV L G V GG + R+ L+ G +VV Sbjct: 81 RSAIGPLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNALKRGVDVVV 140 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSAT 188 GTPGR+ DHI L + L+ VVLDEADEMLD+GF +DIE IL +P R+ ++FSAT Sbjct: 141 GTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGRQTVLFSAT 200 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKN 246 + P I +A+ + D VR+ IA E + A +VA + + A+ +L Sbjct: 201 MPPRIDRIARAHLSDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRVLDVESPTA 260 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVFC TR V + T+ L ++ AL G ++Q++R + +R+G A + +ATDVAAR Sbjct: 261 AIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADLLVATDVAAR 320 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ L V++ ++ S+PE+ +HR GR GRAGR+G ++ + R + + R Sbjct: 321 GLDVEQLTHVVNYDVPSSPESYVHRIGRVGRAGREGAAITLAEPREHRYLKTIERVTKQR 380 Query: 367 VVWEPAPSVEAIRER 381 + E P+V + R Sbjct: 381 IAIEKIPTVADLHAR 395 >gi|153938870|ref|YP_001392080.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str. Langeland] gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum F str. Langeland] gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum F str. 230613] Length = 524 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 158/520 (30%), Positives = 267/520 (51%), Gaps = 44/520 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ G+ +++QE + L DV+ AQTG+GKT+AFG + S L + Sbjct: 10 NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + AL + PTRELA+Q+ EL+ L Y+KT V+ GG S+ R+ +D+++ Sbjct: 70 EKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGR+ DHI + L + + ++LDEADEML++GF +DIE I++S+ ++++ + Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I LA NY +KD + I ++ I V D+ AI I+ Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSE 243 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++AI+FC T+ V + + + V + G++SQ +R N L+ + +ATD Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 VAARGID+ ++ VI+ ++ + E+ +HR GRTGRA ++G + V P+ + R+ ER+ Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415 + + + P++E I E+ +L D I+ ++ + MV L D + Sbjct: 364 TKS---KITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSE 418 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 ++A + + L S F + + R LSVG Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 K + L+ + SS + IG I + TF++VS+ Sbjct: 456 KDSINVKSLLTFIQDSSSVKNHEIGDIDILDKFTFMDVSS 495 >gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] Length = 493 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 131/347 (37%), Positives = 199/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E GY T +Q + L +DV+ +AQTG+GKT +F L + LL + + Sbjct: 22 ILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + AV GGV ++ + L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y +D + +A N +++ VA D+ A+V ++R K I Sbjct: 202 FSGEIKKLAATYLRDPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRERSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ +Q ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 640 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 144/406 (35%), Positives = 226/406 (55%), Gaps = 15/406 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 22 KAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQLKPQ 79 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 80 ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P+KR++ +FSAT+ P Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 256 RTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +S+ G + M LL +++ E Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITESLAGGQIDMYRDLLQRYETE 416 >gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. Y412MC10] gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5] gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10] gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5] Length = 533 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 153/433 (35%), Positives = 239/433 (55%), Gaps = 22/433 (5%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 MK F + P+V+ +A++E G+ T +Q + L KD++ AQTG+GKT AFGL Sbjct: 1 MKNFADFGLEPRVL-QAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLP 59 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L + E +R +AL + PTRELA+QV E+ L G+ GG + R+ Sbjct: 60 LIHKIAKEEERI------VALIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQ 113 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R L+ I++GTPGRL DHI K + + ++ VVLDEADEMLD+GF +DI+ IL P Sbjct: 114 IRALKRKPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVP 173 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 ++R+ L+FSAT+ I LA + K+ V++ ++ ID + V + A+ Sbjct: 174 EERQTLLFSATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSR 233 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L + AIVF T+ V + L + + L G+LSQ +R ++ RDG V Sbjct: 234 LLDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDV 293 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA 356 +ATDVAARG+D+ + V++ +L +PE+ +HR GRTGRAG++G + FV P+ M Sbjct: 294 LVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLY 353 Query: 357 --ERLFREANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAK 410 ER+ R + +P P++ EAI + QRI+ + + QG + K + LL + Sbjct: 354 FIERVTRH---RIPRKPLPTIAEAIEGK--QRIIAERVLEIIEQGELTEYKGLAIQLLEQ 408 Query: 411 HDPEKIAAGFLRI 423 +D ++ A ++I Sbjct: 409 YDSVQLLAAAMKI 421 >gi|56460521|ref|YP_155802.1| ATP-dependent RNA helicase DbpA [Idiomarina loihiensis L2TR] gi|56179531|gb|AAV82253.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] Length = 474 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 143/378 (37%), Positives = 217/378 (57%), Gaps = 22/378 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P + L E GY +T VQ L L D +V A TGSGKT AF L L + L A+ Sbjct: 27 NLPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLLAKLEAK 86 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV---VVAVCIGGVSVHRERRDLQ 122 + FSP AL + PTRELA QV E+ L AK+ + ++ +C GG + L+ Sbjct: 87 S--FSPQ----ALVLCPTRELAHQVADEVRKL-AKSMLNIKILTLC-GGEPSRIQTNSLE 138 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 +GAH++VGTPGR+ DH+ + +++S L +VLDEAD ML++GF+D + I+ PK R+ Sbjct: 139 HGAHVLVGTPGRVLDHLEQRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQT 198 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILR 240 L+FSAT I LA+ A + E + + A+++ D+A ++N+L Sbjct: 199 LLFSATYPKNIAALAEQVTTKARNIEAIQE---QAKPQIEQLFYAMNNEDSAQLVMNLLG 255 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H +N +VFC+T+ V L + F V+AL GEL Q++R A+ +G ARV IA Sbjct: 256 DHQPENCLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVLIA 315 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAE 357 TDVA+RG+D+ +L+LVI ++ + + HR GRTGRAG++G+++ +I + R E Sbjct: 316 TDVASRGLDIAELDLVISVNMAHDLDTHTHRIGRTGRAGKEGVAITLIAEKDDYKMRLLE 375 Query: 358 RLFREANVSVVWEPAPSV 375 F E + +PAP++ Sbjct: 376 DTFAE---PIQVKPAPAL 390 >gi|312959777|ref|ZP_07774293.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6] gi|311285943|gb|EFQ64508.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6] Length = 557 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 170/552 (30%), Positives = 287/552 (51%), Gaps = 33/552 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P ++ ++ GY +++Q+ + + +D++ AQTG+GKT AF L + + Sbjct: 11 FNLNPNILAAVIAT-GYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHCI- 68 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 PA P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 69 ------DPAKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R +S + +VLDEADEML LGF DD+E I + P R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R + ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--PLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGD---LLDRLTADIGCTPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FK 464 +AA LR G L A E+ P+ + R + + G R+ + Sbjct: 419 ALAAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPVPLAE 478 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTK 538 Query: 525 VKLDK--GIQLK 534 +K + G QLK Sbjct: 539 LKDTRVAGKQLK 550 >gi|323497181|ref|ZP_08102201.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326] gi|323317756|gb|EGA70747.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326] Length = 458 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 139/376 (36%), Positives = 213/376 (56%), Gaps = 12/376 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E ++ GY +T +Q+ L L KDV+ +TGSGKT F L + S L + Sbjct: 12 PELL-ETVASLGYSEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGVLSNLNVKRF 70 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R +L + PTRELA QV +E+ L + V GG+ + + L++GAH Sbjct: 71 RVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAH 124 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ +N+ L +VLDEAD MLD+GF D I+ I+ ++P +R+ L+FS Sbjct: 125 ILVGTPGRILDHLSKGRINLDELNTLVLDEADRMLDMGFEDAIDAIISAAPTQRQSLLFS 184 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAK 245 AT I TLA+ + V + S + + I+ R L ++DNA+ +L H + Sbjct: 185 ATFPANIKTLAEKVMSEPEMVKVES-THETTTIEQRFYALEGSEEKDNALETLLLVHKPE 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++VFC+T+ V T L F VV L G++ Q+ER AL M + + +ATDVAA Sbjct: 244 SSVVFCNTKKEVQNVTDELNHRGFSVVELHGDMEQREREQALTMFANKSVSILVATDVAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ +L+ V + ELS +PE +HR GRTGRAG KG++ + R ER+ E + Sbjct: 304 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFYSEKEHYRVERI--EDYM 361 Query: 366 SVVWEPAPSVEAIRER 381 ++ + +P E ER Sbjct: 362 ALDFNASPLPEKPVER 377 >gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium sp. AL-21] gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21] Length = 529 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 153/520 (29%), Positives = 268/520 (51%), Gaps = 43/520 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I A+ + G+ T +Q + L KDV AQTG+GKT AFG+ + T+ Sbjct: 10 NISSEIQRAVEDMGFEEATPIQSLAIPHVLEGKDVTGQAQTGTGKTAAFGIPILETV--- 66 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ 122 P++ L A+ + PTRELA+QV E++ L Y + ++ V GG + R+ + L+ Sbjct: 67 ----DPSNRDLQAVILCPTRELAIQVAEEMKKLSKYMRKIGILPVY-GGQPIERQIKALK 121 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G I++GTPGR+ DH+R +++ +K ++LDEADEMLD+GFR+DIEF+LD P +R++ Sbjct: 122 KGVQIIIGTPGRVMDHMRRGTIDMGSVKMLILDEADEMLDMGFREDIEFVLDYIPDERQI 181 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+SP I + + YQ+ + + + +I V + + + +L + Sbjct: 182 LLFSATMSPDILYITRRYQESPEFLKVVPKELTVPEIKQIYFEVKEKMKLDVLSRLLDIN 241 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K ++VFC+T+ V + L + L G++SQ++R N + R G + +ATD Sbjct: 242 DFKLSLVFCNTKRRVDKLVNHLQIRGYAADGLHGDMSQRQRDNVMSKFRSGNIEILVATD 301 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ ++E V + ++ ++ E +HR GRTGRAG+ G++ + + + R Sbjct: 302 VAARGIDVDNVEAVFNFDVPNDDEYYVHRIGRTGRAGKTGIAYTFVSGKEVYQLRDIMRY 361 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--------GDEKKMVDVLLAK-HDP 413 + + PS + E ++ FL+ I+ +E +MV+ ++ + + Sbjct: 362 TKTKIEQQQIPSASDVAE------IKTTNFLEKIKRIINNDNIDNEVRMVEKMMEEDYSS 415 Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 + AA L+I E+ + + + D G S G +++ Sbjct: 416 VETAAALLKI------VMEKSGTTTKTTSSQDYGD------TGAAS-----GQVRLFINI 458 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 G K K + R ++ + +G++ +IG + + +FVEV Sbjct: 459 GRKDKVKVRDIIRAIADKTGLSSSAIGKVDIFDKFSFVEV 498 >gi|317051368|ref|YP_004112484.1| DEAD/DEAH box helicase domain-containing protein [Desulfurispirillum indicum S5] gi|316946452|gb|ADU65928.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum S5] Length = 488 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 136/346 (39%), Positives = 197/346 (56%), Gaps = 8/346 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +AL E+G+ TS+Q+A + L + DV+ AQTG+GKT AFGL + T+ E + Sbjct: 21 QALREKGFEKPTSIQKACIPLVLHQHVDVVGQAQTGTGKTAAFGLPIIETVKPERRQIQ- 79 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA+QV E+ L + +A GG S+ + + L+ G HI VGT Sbjct: 80 -----ALILTPTRELALQVADEITSLCGSMKLDIATLYGGQSIGLQIQKLRRGVHIAVGT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I L++SHL+ VVLDEADEML++GF +DIE IL +P ++RML+FSAT+ Sbjct: 135 PGRIQDLIDRGNLDLSHLEYVVLDEADEMLNMGFIEDIENILQHTPAEKRMLLFSATMPR 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LAK Y V + S D V +D+ A+ ++ +VFC Sbjct: 195 PILNLAKRYMSTYEHVVAEQTQKTTSLTDQIYYEVREADKFEALCRVIDITPDFYGVVFC 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ T+ L + AL G++SQ +R L R R + +ATDVAARGID+ Sbjct: 255 RTKVDADEITRRLQHRKYVTEALHGDVSQNQREKILDAFRRKRLNILVATDVAARGIDVQ 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356 +L VI+ L +PE+ +HR GRTGRAG++G ++ F+ P ++ A Sbjct: 315 NLTHVINFSLPQSPESYVHRVGRTGRAGKEGTAITFISPAEFRKLA 360 >gi|91786555|ref|YP_547507.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666] gi|91695780|gb|ABE42609.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666] Length = 468 Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 135/344 (39%), Positives = 200/344 (58%), Gaps = 12/344 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L + GY+++T +Q A L L KD++ A+TGSGKT AFGLAL + L A Sbjct: 13 LPAHVLANLQQLGYLSMTPIQAASLPVALLGKDLIAQAKTGSGKTAAFGLALLANLNAR- 71 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 RF A A+ + PTRELA QV E+ L A+ + V GGV + + LQNGA Sbjct: 72 -RF----AVQAMVLCPTRELADQVATEIRRLARAEENIKVVTLCGGVPLRNQVSSLQNGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ + L++ L +VLDEAD MLD+GF +DI + P +R+ L+F Sbjct: 127 HIVVGTPGRIMDHLERETLDVDALNTLVLDEADRMLDMGFYNDIATVAKQCPDERQTLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRY 241 SAT I L++ + K+ + + +++ + S I R V SDRD NA+ +L + Sbjct: 187 SATYPEGIAKLSQQFMKEPQTITVQAQH-EKSKIRQRWYEVPESDRDEARLNAVALLLNH 245 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + + + FC+T++ L F +AL GEL Q+ER L + V +AT Sbjct: 246 YRPASTLAFCNTKSQCRALVAYLKNKGFSALALYGELEQRERDQVLVQFSNRSCSVLVAT 305 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DVAARG+D+ LE+VI+ +++ + E +HR GRTGRA +G ++ Sbjct: 306 DVAARGLDISQLEMVINVDVTPDAEVHIHRIGRTGRADEEGWAI 349 >gi|153834391|ref|ZP_01987058.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01] gi|148869239|gb|EDL68261.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01] Length = 459 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 139/393 (35%), Positives = 214/393 (54%), Gaps = 13/393 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L Y ++T +Q L L ++DV+ +TGSGKT AFGL + S L + R Sbjct: 17 ETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +L + PTRELA QV +E+ L + V GG+ + + L++GAHI+VGT Sbjct: 75 ----SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ +N+ L +VLDEAD ML++GF+D ++ I+D++PK+R+ L+FSAT Sbjct: 131 PGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPKQRQTLLFSATFPE 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + + S + S Y + RD A+ N+L H ++A+VFC Sbjct: 191 KIEQIAQRIMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANLLLTHQPESAVVFC 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V L F VV L G+L Q+ER AL + + +ATDVAARG+D+ Sbjct: 251 NTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVD 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +L+ V + ELS +PE +HR GRTGRAG KG++ + R R+ ++ VV Sbjct: 311 NLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLDMDVVPAT 370 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 P+ + Q+ Q + +I G +K+ V Sbjct: 371 LPA------KSTQQPYQAKMVTINIDGGKKQKV 397 >gi|229589245|ref|YP_002871364.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25] gi|229361111|emb|CAY47974.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25] Length = 557 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 170/552 (30%), Positives = 287/552 (51%), Gaps = 33/552 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P ++ ++ GY +++Q+ + + +D++ AQTG+GKT AF L + + Sbjct: 11 FNLNPNILAAVIAT-GYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHCI- 68 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 PA P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 69 ------DPAKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R +S + +VLDEADEML LGF DD+E I + P R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R + ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--PLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGD---LLDRLTADIGCTPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FK 464 +AA LR G L A E+ P+ + R + + G R+ + Sbjct: 419 ALAAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAE 478 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTK 538 Query: 525 VKLDK--GIQLK 534 +K + G QLK Sbjct: 539 LKDTRVAGKQLK 550 >gi|218887215|ref|YP_002436536.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758169|gb|ACL09068.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 531 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 170/519 (32%), Positives = 266/519 (51%), Gaps = 45/519 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E G+ + +Q + L +DV+ AQTG+GKT AFG+ L +R Sbjct: 15 ILKAIEEMGFEETSPIQALAIPHILEGRDVIGQAQTGTGKTAAFGIPLL-------ERID 67 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P + + + PTRELA+QV EL L + K G+ V GG + R+ + L+ GA +V Sbjct: 68 PREKDIQGIILCPTRELAIQVAEELTQLASRKRGLYVLPVYGGQPIDRQFKALRRGAQVV 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+ +N+S ++ VLDEADEMLD+GFRDDIE IL P + + + FSAT Sbjct: 128 VGTPGRVMDHMERGTINLSTVRMAVLDEADEMLDMGFRDDIEHILGQVPGEAQTVFFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + PAI +A+ + K + + + I+ V + A+ +L + K AI Sbjct: 188 MPPAILDMAQRFLKTPEFLKVTQKQVTVPSIEQIYYEVRPFQKLEALCRVLDLYNPKRAI 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFCST+ V T+ L +Q L G L+Q +R + R + +ATDVAARGI Sbjct: 248 VFCSTKRGVDELTQHLQGRGYQADGLHGNLNQSQRDRVMARFRSNGIEILVATDVAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR-RAERLFREANVS 366 D+ D+E V++ ++ + E+ +HR GRTGRAGR G + FV ++ + R + F +A+ Sbjct: 308 DVDDVEAVVNYDIPNAVEHYVHRIGRTGRAGRSGRAFTFVSGRDFYKLRDIKKFTKAH-- 365 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAKHDPE----KIAAGFL 421 +V P+ + ++L + I+ G+ +K D++ + D + +AA L Sbjct: 366 IVQHQVPTSSDVATVKTNQLLAE--VRRHIEAGELEKYTDIVESFLDEDVTTVDMAAALL 423 Query: 422 RI---HRAGLCAP-EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 ++ G P E TP G G+ G L+VG K Sbjct: 424 KLLMRRELGDAVPGGEKTP------------------AGTGAE---PGMVRLFLNVGRKM 462 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + AR ++ + +GI + IGAI ++ ++FVEV AD Sbjct: 463 RVTARDIVGAIAGETGIPGRMIGAIDIRDRVSFVEVPAD 501 >gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] Length = 561 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 175/555 (31%), Positives = 281/555 (50%), Gaps = 44/555 (7%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ +A+++ GY + + +Q A + L DV+ AQTG+GKT AF + + S + E+ Sbjct: 22 PAVL-KAVADVGYESPSPIQAATIPAMLEGSDVVGLAQTGTGKTAAFAIPILSKIDTESR 80 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AL +APTRELA+QV A+ V V GG S + L+ GA + Sbjct: 81 NTQ------ALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLKRGAQV 134 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DH+ L++SHL +VLDEADEML +GF +D+E IL +P+ +++ +FSA Sbjct: 135 VVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVALFSA 194 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ PAI + Y D V V + S+ + +I R LV+ + +A+ +L Sbjct: 195 TMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLETEQGDAM 254 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF T+ + + L F A++G++ Q R + ++DG + +ATDVAARG Sbjct: 255 IVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDILVATDVAARG 314 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREAN 364 +D+ + V++ ++ +PE+ +HR GRTGRAGR G + +FV P +++ ER+ R+ Sbjct: 315 LDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQ-- 372 Query: 365 VSVVWEPAPSVEAIRERDAQRI-------LQDP---LFLDSIQGDEKKMVDVLLAKHDPE 414 +V PSV+ + E+ + L P LF ++G E+ DV +A Sbjct: 373 -KLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRALVEGYERDH-DVPMA----- 425 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD----SRAFKVGGGSRDNFKGSSWFS 470 IAA R G EE + R R D S A + R+ + + Sbjct: 426 DIAAALALQSRNG----EEFLMTEPPPEKRRERPDRGDRSDAPR---KPRERRSDLATYR 478 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVK 526 ++VG + K ++ + G++R G I ++ D + VE+ A + + L+ T Sbjct: 479 IAVGKRHKVAPGAIVGAIANEGGLHRSDFGHITIKMDHSLVELPAKLPGNTLKALQNTKI 538 Query: 527 LDKGIQLKYLGGEKP 541 + IQL+ G KP Sbjct: 539 QGQLIQLQPDRGPKP 553 >gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa] gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa] Length = 775 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 220/391 (56%), Gaps = 16/391 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + + L RG +L +Q A+L P L +D++ A+TG+GKT+AFG+ + L + Sbjct: 140 LPHRLVQTLQNRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPIIKRLTEDA 199 Query: 67 D----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121 + + P L +APTRELA QV +E++ + +VC+ GGVS ++ L Sbjct: 200 ELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIK---ESAPYLSSVCVYGGVSYVTQQSAL 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G +VVGTPGR+ D ++G L + ++ +VLDEAD+ML GF +D+E IL++ P KR+ Sbjct: 257 SRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENLPSKRQ 316 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR- 240 ++FSAT+ + LA+ Y + +++++ + Q + L ALS + IL Sbjct: 317 SMLFSATMPTWVKKLARKYLDNPLQIDLVGD--QEEKLAEGIKLYALSATAASKRTILSD 374 Query: 241 ----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 Y I+F T+ + L + AL G++SQ +R L R G+ Sbjct: 375 LVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASE-ALHGDISQHQRERTLNGFRQGKFT 433 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 V +ATDVA+RG+D+P+++L+IH EL ++ E +HRSGRTGRAG++G ++ + + +R Sbjct: 434 VLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 493 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRIL 387 L R+A + P++E + E A++++ Sbjct: 494 RSLERDAGCKFEFVSPPAIEEVLESSAEQVV 524 >gi|219851679|ref|YP_002466111.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris E1-9c] gi|219545938|gb|ACL16388.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris E1-9c] Length = 550 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 166/518 (32%), Positives = 257/518 (49%), Gaps = 42/518 (8%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I A+ + G+ T +Q+ + + DV+ AQTG+GKT AFG+ TL Sbjct: 34 ISKEIQRAIVDLGFEEPTPIQQMAIPLIHQGFDVIGQAQTGTGKTAAFGI---PTL---- 86 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P + AL ++PTREL +Q+ EL L + G+ + GG + R+ L+ G Sbjct: 87 EKIDPLDKHVQALILSPTRELTIQIAEELSKLARYRRGIAILPIYGGQPIERQFDALRRG 146 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +V+GTPGR+ DH+R L H+K VVLDEADEMLD+GFRDDIE IL ++P R+ + Sbjct: 147 VQVVIGTPGRVMDHMRRGTLVFDHVKTVVLDEADEMLDMGFRDDIELILKTTPSDRQTTL 206 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S I L K +QK V + + + ++ V S + A+ +L + Sbjct: 207 FSATMSQPILELTKRFQKSPKMVKVTHKELTVAAVEQIYYEVRESLKLEALARLLDIYNP 266 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K ++FC+T+ V L + AL G+L Q +R + R G + +ATDVA Sbjct: 267 KLTLIFCNTKRRVDELVGQLQVRGYAAEALHGDLKQSQRDRVMGRFRSGGIDILVATDVA 326 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ D+E V + ++ + E +HR GRTGRAGR G + + + + R N Sbjct: 327 ARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGRTGRAFTFVSGKEIWKIRDIQRYTN 386 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDEK--KMVDVLL-AKHDPEK 415 V+ P++ + E ++ LF+D ++ G EK M++ L+ + Sbjct: 387 TRVIQAQVPTLSDVEE------IRTTLFIDKVKTIVDAGGLEKYVSMIEKLMRDDYASLD 440 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 IAA L++ E T + D FK G G F L+VG Sbjct: 441 IAAALLKMRM------ERDTKEETAAEPD--------FKNTGAE----AGMVRFFLNVGR 482 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 A+ ++ + +GI +SIGAI + +FVEV Sbjct: 483 NHNVRAKDILGAIAGETGIPGKSIGAINIFDSYSFVEV 520 >gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218] Length = 632 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 174/558 (31%), Positives = 292/558 (52%), Gaps = 40/558 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + +++ P Sbjct: 20 ALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKL--DLNQYKPQ- 76 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 77 ---AIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRALKSGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I + L++ VLDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + +D RV++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 194 VKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEI-- 371 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGD---EK--KMVDVLLA--KHDPEKIAAGFLR 422 P + + E R+ Q + L++ + EK ++V+ L A + D +AA L+ Sbjct: 372 -QLPHRDKVAE---ARLSQLAIELEAEKEHASLEKFAELVEKLQASLEIDANTLAAILLK 427 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-----GSSW--FSLSVGS 475 + G + ++ +R + R + GG R + + + W + L VG Sbjct: 428 -RQQGKRPLFYVGEDPMIEAVERDKQRRRERRENGGDRRDGRREYTANTDWETYQLQVGR 486 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGI 531 Q + + ++ L G+ + SIGAI++ TFV++ SAD LR+ I Sbjct: 487 DQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKTMSADVTGKLRKL-----RI 541 Query: 532 QLKYLGGEKPDFRGYKSS 549 + K +G DF ++ S Sbjct: 542 RQKEVGAVVCDFDDFRES 559 >gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia J2315] gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia J2315] Length = 494 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 132/347 (38%), Positives = 203/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 22 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 202 FSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ +Q ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L + E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368 >gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665] gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665] Length = 731 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 168/539 (31%), Positives = 276/539 (51%), Gaps = 49/539 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY + +QEA + L +DV+ AQTG+GKT AF L S L +D A+ Sbjct: 86 AVEDLGYTAPSPIQEATIPLLLAGRDVVGLAQTGTGKTGAFALPALSRLAEASDVNGRAN 145 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP LA+APTRELA+Q+ + G V V GG + L+ GA +VVGTP Sbjct: 146 APQILALAPTRELALQLAEAFDAYAKHLGDVSVLAVYGGSPYGPQLSALRRGAQVVVGTP 205 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L++S L+ +VLDEADEML +GF ++++ IL S+P ++ +FSAT+ PA Sbjct: 206 GRVIDHIERGSLDLSQLQTLVLDEADEMLRMGFAEEVDRILASTPASKQTALFSATMPPA 265 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Y V ++ ++ + I R + V + A+ IL + I F Sbjct: 266 IRRISAQYLNSPEEVAVSRQSTTSATIRQRYLQVGHQYKLEAMTRILETEDHEGVIAFVR 325 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TRA + L F+ VA+SG+++Q++R ++ ++ GR + +ATDVAARG+D+ Sbjct: 326 TRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKTGRVDILVATDVAARGLDVER 385 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVW 369 + VI+ ++ + E+ +HR GRTGRAGR+G +V F+ P+ + ++ ER R+ + Sbjct: 386 ISHVINYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMAV 445 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSI-----QGDEKKM------VDVLLAKH--DPEKI 416 V A R+R F D I + E+++ V + +H +P ++ Sbjct: 446 PSVADVNAARKR---------RFADGITRTLERASEEELAVFGEIVAAYVDEHEAEPTRV 496 Query: 417 AAGFLRIHRAG--LCAPEEITPVSLVSGRDR-----------------FRDDSRAFKVGG 457 AA + + G L A E+ P GR+R D R + G Sbjct: 497 AAALGMMAQGGRPLLAREQEIPFG--GGRNRKDRDGGREGGRDGGRERGTSDGRGSR--G 552 Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +R+ G++ + ++VG + + ++ L G+ +IGAI ++ + + VE+ AD Sbjct: 553 PAREPAAGNATYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPAD 611 >gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain protein [Leadbetterella byssophila DSM 17132] gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila DSM 17132] Length = 619 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 169/537 (31%), Positives = 273/537 (50%), Gaps = 50/537 (9%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I I +A+ E G+ T +Q A + + +DV+ AQTG+GKT AFG+ + AE Sbjct: 75 ISDYIVKAVEEMGFTESTPIQTAAIPVVMSGRDVIGQAQTGTGKTAAFGIPAIEHVNAE- 133 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125 DR + L + PTRELA+QV +L L K G++V+ GG S R+ +L+ G Sbjct: 134 DRNTQV-----LILCPTRELALQVKEQLTLLAKYKKGLLVSAIYGGESYERQFANLKRGT 188 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGR+ DHI K L + ++ V+LDEADEML++GFR+DIE IL + + R+ ++F Sbjct: 189 QIVVGTPGRIMDHIEKKTLKLDNISMVILDEADEMLNMGFREDIEQILSFAKEDRQTVLF 248 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+S I + K +Q D V + + +++I+ LV + +V ++ H + Sbjct: 249 SATMSKEILNITKKFQNDPEIVKVTRKEITNTNIEQSYYLVKKEAKFELMVRLIDVHDLQ 308 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VFC+T++ V + L + + L G++ Q R+ + R+G ++ +ATDVAA Sbjct: 309 LMLVFCNTKSKVDEIVEELQANGYAAEGLHGDMRQAARNQVMNKFRNGNTKILVATDVAA 368 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ ++ VI+ +L + E +HR GRTGRAG+ G + I + + R L + V Sbjct: 369 RGIDVSGVDAVINYDLPMDLEYYVHRIGRTGRAGKLGKAFLFITKRDRSRMRDLEQYTKV 428 Query: 366 SVVWEPAPS------------VEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK- 410 ++ P+ VE IRE I++D P F +K+VD L + Sbjct: 429 AIPQGKIPTSADLEKSRINKFVEKIRE----NIVEDTNPAF--------EKIVDQLKEEG 476 Query: 411 HDPEKIAAGFLRIH----RAGLCAPEEITPVSLVSGR-DRF----RDDSRAFKVG----- 456 +I + +++ R E+I + GR +RF R + R F Sbjct: 477 FYTHQIISALMQMQMGAVRKSSFRDEDIADEA--RGRNERFASKERGNRREFSRDRKPSF 534 Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 GG R +G + +++G K ++ + + I + IG I + +FVEV Sbjct: 535 GGGRSAEEGMTRLFINLGRKDNVSPNHIVGAIASEAKIPGRVIGQIDMYDKFSFVEV 591 >gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522] gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 500 Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 128/346 (36%), Positives = 197/346 (56%), Gaps = 8/346 (2%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M +F+ NI I EA+ + G+ T +QE ++ +D++ AQTG+GKTVAFG+ Sbjct: 1 MALFKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPC 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 ++ E P AL + PTRELA+QV EL L G+ GG + R+ Sbjct: 61 VEQVVVEEKH------PQALVLTPTRELAIQVAEELNKLGQVKGIKALPIYGGQEITRQI 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ I+V TPGR DH+R K + LK VVLDEADEML +GF +DIE IL P Sbjct: 115 TALKKRPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPG 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ P + T+A + V + + ++ +I+ R + ++ ++ + + N+ Sbjct: 175 ERQTLLFSATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNL 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + AI+F T+ V T+ L+ F V L G++ Q+ R ++ + G V Sbjct: 235 LDMETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVM 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 +ATDVAARG+D+ D+ VI+ +L + E+ +HR GRTGRAG+KG+S Sbjct: 295 VATDVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGIS 340 >gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM 13479] gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM 13479] Length = 561 Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 162/543 (29%), Positives = 273/543 (50%), Gaps = 49/543 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ G+ + +Q + + +D++ AQTG+GKT AFG+ L + P S Sbjct: 18 AVADMGFEEASPIQAQAIPVQMEGRDIIGQAQTGTGKTAAFGIPLLQ-------KVDPKS 70 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L A+A+ PTRELA+QV E+ L GV V GG + ++ R L++G I++GT Sbjct: 71 KKLQAIALCPTRELAIQVADEIRRLAKYMHGVKVLPIYGGQDIVKQIRSLKDGTQIIIGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R K + H+ VV+DEADEML++GF +D+E IL P+ R+ +MFSAT+ Sbjct: 131 PGRVMDHMRRKTVKFDHIHTVVMDEADEMLNMGFLEDMETILSQLPEDRQTVMFSATMPQ 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A +QK+ V V + + + V + + +L + K ++VFC Sbjct: 191 AIADIAHKFQKEPVTVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMYAPKLSVVFC 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V + L + L G+L Q +R + R+GR + +ATDVAARGID+ Sbjct: 251 NTKKGVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNGRTDILVATDVAARGIDVD 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 D+E V + +L + E +HR GRTGRAGR+G++ FV+ + + + + + R ++ + Sbjct: 311 DVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRD-IQRYCKTKIIPQ 369 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDVLLAKHDPE-----KIAAGFLRIH 424 PS+ + +IL++ D+I + D +M+++L K E +AA L++ Sbjct: 370 AIPSLNDVTGIKVDKILEN--VADTIEESDLSEMINILEKKLLEEDYTSLDLAAALLKMM 427 Query: 425 RAGLCAPEEIT----PVSLVSGRDRF-----------------RDDSRAFKVGGGSRDNF 463 E+I P SL + DSR GG D Sbjct: 428 MGE--ENEDIIDTREPRSLDELDSYYRGENRNGNGRGRGRNGGGRDSR---YEGGRED-- 480 Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523 + +++G Q + ++ + SG+ + +G+I + TFVEV + D + + Sbjct: 481 --MARLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPRENADAVLQ 538 Query: 524 TVK 526 +K Sbjct: 539 AMK 541 >gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter sp. Re1] Length = 529 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 164/528 (31%), Positives = 280/528 (53%), Gaps = 30/528 (5%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + + A+++ G+ T +Q + +DV+ AQTG+GKT AFGL + Sbjct: 4 MKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGLPIL 63 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118 ++ +D+ A + + PTRELA+QV EL+ L K G+ + GG + R+ Sbjct: 64 D-MIDTDDKNQQA-----IILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQI 117 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ G I++GTPGR+ DH+R L + + K VVLDEADEMLD+GFR+DIE IL+ +PK Sbjct: 118 HALKRGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPK 177 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ LMFSATI I LA+ Y + + + + ++ V D+ A+ + Sbjct: 178 ARQTLMFSATIPKPILELAERYLNNPQLIKVVHKELTVPSVEQYYFEVKERDKVEALSRL 237 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + ++ A+VFC+T+ V + L + L G++SQ +R + ++G + Sbjct: 238 IDFYNPNLALVFCNTKKRVDELMEQLQARGYSADGLHGDMSQSQRDRVMTKFKNGTIDIL 297 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357 +ATDVAARG+D+ D+++V++ ++ N E +HR GRTGRAGR G + FVI +++ + + Sbjct: 298 VATDVAARGLDVDDVDVVVNFDVPQNDEYYVHRIGRTGRAGRSGKAFTFVIGRDIYKLKD 357 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLL-AKHDPE 414 + R AN ++ PS+ + E +L+ + D G + ++ L+ ++ Sbjct: 358 -IQRYANTKILRREIPSLLDVEETRINLLLEKVKQVVDDGGLGKYNQWIERLMEEEYTSL 416 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474 +AA L+I V G+D ++ + ++ S G + +++G Sbjct: 417 DLAAALLKI----------------VLGKDGEQEQPESSELDIESTGGDSGMARLFINIG 460 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDLL 521 QK A+ ++ + +G+ + IG+I + TFVEV A+ VD+L Sbjct: 461 RNQKIRAKDIVGAIAGETGMPGKLIGSIDIYDKFTFVEVPAEYAVDVL 508 >gi|308080376|ref|NP_001183357.1| hypothetical protein LOC100501766 [Zea mays] gi|223949963|gb|ACN29065.1| unknown [Zea mays] gi|238010976|gb|ACR36523.1| unknown [Zea mays] Length = 483 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 205/347 (59%), Gaps = 9/347 (2%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 ++ +D++ A+TG+GKT+AFG+ + ++ N+++ P PLA+ +APTRELA QV RE Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVERE- 59 Query: 95 EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153 + + + +C+ GG + ++ R L G +V+GTPGR+ D ++ L+++ ++ VV Sbjct: 60 ---FLDSSPLETLCVYGGTPIMQQIRKLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVV 116 Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213 LDEAD+ML +GF D+E IL+ P +R+ LMFSAT+ I L + Y + V V++ E+ Sbjct: 117 LDEADQMLSVGFDLDVETILERVPPQRQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGED 176 Query: 214 RQHSDIDYRAVLVALSDRDNAIV--NILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQ 270 Q + V+ +R+ V +++ H IVF T+ R + ++ FQ Sbjct: 177 DQKLAEGISLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSRS-FQ 235 Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330 AL G++SQ +R L RDGR + IATDVAARG+D+P+++LVIH EL ++ E +H Sbjct: 236 CEALHGDISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVH 295 Query: 331 RSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 RSGRTGRAG+KG ++ + + R + R+ P +V+ Sbjct: 296 RSGRTGRAGKKGTAIVMYNYDQSRAVRVIERDVGCKFTELPKITVDG 342 >gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC BAA-613] gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC BAA-613] Length = 569 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 139/405 (34%), Positives = 221/405 (54%), Gaps = 22/405 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E G+ + +Q + + +D++ AQTG+GKT AFGL L + P Sbjct: 18 AITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLPLLQ-------KVDPKV 70 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L A+ + PTRELA+QV E+ +AK GV V GG + ++ R L++G ++VG Sbjct: 71 KKLQAIVLLPTRELAIQVAEEMRR-FAKFMHGVKVLPIYGGQDIVKQIRSLKDGTQVIVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R K + + H+ VVLDEADEML++GF +D+E IL P++R+ LMFSAT+ Sbjct: 130 TPGRVMDHMRRKTVKVDHVLTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSATMP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI +A+ +QKD V V + + + V ++ + +L + K +IVF Sbjct: 190 QAIAEIARKFQKDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMSRLLDMYAPKLSIVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V + L + L G+L Q +R + R+GR + +ATDVAARGID+ Sbjct: 250 CNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDILVATDVAARGIDV 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D+E V + ++ + E +HR GRTGRAGR+G + ++ + + R ++ + Sbjct: 310 GDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEVYKLRDIQRYCKTKIIPQ 369 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQ-----GDEKKMVDVLLAK 410 PS+ I E ++I LD +Q D KMV+++ K Sbjct: 370 AIPSLNDITEIKVEKI------LDQVQEVLNDTDLTKMVNIIEKK 408 >gi|156973083|ref|YP_001443990.1| ATP-dependent RNA helicase DbpA [Vibrio harveyi ATCC BAA-1116] gi|156524677|gb|ABU69763.1| hypothetical protein VIBHAR_00762 [Vibrio harveyi ATCC BAA-1116] Length = 459 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 139/393 (35%), Positives = 213/393 (54%), Gaps = 13/393 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L Y ++T +Q L L ++DV+ +TGSGKT AFGL + S L + R Sbjct: 17 ETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +L + PTRELA QV +E+ L + V GG+ + + L++GAHI+VGT Sbjct: 75 ----SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ +N+ L +VLDEAD ML++GF+D ++ I+D++PK+R+ L+FSAT Sbjct: 131 PGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPKQRQTLLFSATFPE 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + + S + S Y + RD A+ N+L H ++A+VFC Sbjct: 191 KIEQIAQRIMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANLLLTHQPESAVVFC 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V L F VV L G+L Q+ER AL + + +ATDVAARG+D+ Sbjct: 251 NTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVD 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +L+ V + ELS +PE +HR GRTGRAG KG++ + R R+ + VV Sbjct: 311 NLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPAT 370 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 P+ + Q+ Q + +I G +K+ V Sbjct: 371 LPA------KSTQQPYQAKMVTINIDGGKKQKV 397 >gi|297538309|ref|YP_003674078.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp. 301] gi|297257656|gb|ADI29501.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301] Length = 466 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 202/346 (58%), Gaps = 4/346 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-N 66 P+++ +AL+E GY T +Q + L D++ AQTG+GKT AF L L LL + Sbjct: 19 PELL-KALTESGYTKPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFALPLLQKLLPLAS 77 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 SPA P+ AL + PTRELA+QV ++ T + V GGV + + L+ G Sbjct: 78 SSASPAKHPVRALILTPTRELAIQVEESVKAYAKHTPLRSLVVYGGVDIKTQTPHLKTGV 137 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DHI K + ++ ++ +VLDEAD MLD+GF D++ IL PK+R+ LMF Sbjct: 138 EVLVATPGRLLDHIEQKTIQLNQVQILVLDEADRMLDMGFMPDLKRILALLPKQRQNLMF 197 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I LA + + +A N + ++ + VA SD++ ++ +L+ A Sbjct: 198 SATFSNDIKKLADEFLTKPQLIEVARSNATNDNVTQKVYEVAQSDKETLLIQLLKAANAS 257 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + SR ++ LA A+ G+ +QQER AL + G +ATDVAA Sbjct: 258 QVIIFTKTKITASRLSRSLAREGIAADAIHGDKTQQERIKALDGFKAGTITALVATDVAA 317 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 RG+D+ +L +VI+ E+ S PE+ +HR GRTGRAG G+++ FV P+ Sbjct: 318 RGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGIAISFVSPE 363 >gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 15912] gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 15912] Length = 523 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 195/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + +N + AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDN------TVIQAL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++H++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AI+F T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIIFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348 >gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1] gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1] Length = 726 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 160/516 (31%), Positives = 270/516 (52%), Gaps = 23/516 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY + +Q A + L +DV+ AQTG+GKT AF + S L +D P+ Sbjct: 85 ALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSR 144 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV E YAK V GG + + L+ GA +VVGT Sbjct: 145 KTQALVLAPTRELALQVA-EAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGT 203 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI L++S L+ +VLDEADEML +GF DD+E I +P+ R++ +FSAT+ Sbjct: 204 PGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTPETRQVALFSATMPG 263 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++K Y + +++ S+ ++ R + V + +A+ IL I F Sbjct: 264 QIRRMSKQYLNNPAEISVKSKTTTGANTKQRYLQVMGPHKLDALTRILEVEEFDGVIAFV 323 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L FQ A++G++ QQ+R + +++GR + +ATDVAARG+D+ Sbjct: 324 RTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLDVE 383 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368 + VI+ ++ + E+ +HR GRTGRAGR G ++ F+ P+ + R E+ R+ + Sbjct: 384 RISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMH 443 Query: 369 WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFL 421 A +V +R + A+RI + +++ ++ L++ ++ E +IAA Sbjct: 444 LPTAETVNTLRLGKFAERITE------TLESEDVAAFRDLISSYEEEHNVPASEIAAALA 497 Query: 422 RIHRAGL-CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 + + G +E+ R+R +D F G +R +G++ + ++VG +Q+ Sbjct: 498 VMAQGGQPLLVKELPAAPEYQKRERSKD---GFGSRGPTRALTEGNATYRIAVGRRQRVM 554 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ + GI+ IG I ++ D + VE+ AD Sbjct: 555 PGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPAD 590 >gi|59713337|ref|YP_206112.1| ATP-dependent RNA helicase DbpA [Vibrio fischeri ES114] gi|59481585|gb|AAW87224.1| ATP-dependent RNA helicase, specific for 23S rRNA [Vibrio fischeri ES114] Length = 462 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 9/370 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L GY +T +Q L L+ KDV+ +TGSGKT AFGL L + L + RF Sbjct: 17 QNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGLLANLNVK--RFRVQ 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S L + PTRELA QV +E+ L A + V GGV + L++GAHI+VGT Sbjct: 75 S----LVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEHGAHIIVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R LN+ +L VLDEAD ML++GF+D I+ +LD +P KR+ L+FSAT P Sbjct: 131 PGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNLLFSATFPP 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVF 250 I ++A D + A E +++ I+ V DR A+ +L H ++ ++F Sbjct: 191 QIKSIADRIMNDPIMTK-AEETVENTSINQHFFKVGDFEDRLEALQILLLKHQPESTVIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ L + F V AL G+L Q++R AL + + +ATDVAARG+D+ Sbjct: 250 CNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L+ V++ ELS +PE +HR GRTGRAG KG+++ + + ++ N+ + E Sbjct: 310 ESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEYMNIDIRDE 369 Query: 371 PAPSVEAIRE 380 PS + ++E Sbjct: 370 ALPSTDYLKE 379 >gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus J-10-fl] gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl] Length = 552 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 132/338 (39%), Positives = 194/338 (57%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LS GY T +Q + L +DV+ AQTG+GKT AF L + +R + A Sbjct: 17 LSGLGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPMI-------ERVTDALV 69 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL +APTRELAVQV + + V GG + R+ R L G +VVGTPGR Sbjct: 70 VQALVLAPTRELAVQVAEAIHRYGRHRSLRVLPIYGGQPIERQLRGLAQGTQVVVGTPGR 129 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + DH++ L HL+ VVLDEADEMLD+GF +++E IL +P +R+ +FSAT+ PA+ Sbjct: 130 VLDHLKRGSLRFDHLRMVVLDEADEMLDMGFAEELEAILQLTPTERQTALFSATLPPAVQ 189 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 L Y + VRV+IA+E I V D+ +A+ +L + AIVFC TR Sbjct: 190 NLTLRYTRQPVRVSIAAEQLTTPRIRQTYYEVLARDKLDALCRVLDAEMPQLAIVFCRTR 249 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 + L + +L G+LSQ R ++ R+G+ V +ATDVAARG+D+ ++ Sbjct: 250 QEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVLVATDVAARGLDIAEVS 309 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 VI+ ++ ++PE+ +HR GRTGRAGR+G+++ F+ P+ Sbjct: 310 HVINYDVPTDPESYVHRIGRTGRAGREGVAITFITPRE 347 >gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1003] gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003] Length = 487 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 131/347 (37%), Positives = 199/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E GY T +Q + L +DV+ +AQTG+GKT +F L + LL + + Sbjct: 22 ILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + AV GGV ++ + L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y ++ + +A N +++ VA D+ A+V ++R K I Sbjct: 202 FSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRERSLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368 >gi|261392319|emb|CAX49846.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013] Length = 457 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 204/354 (57%), Gaps = 18/354 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V + ++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVTAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E Sbjct: 309 AARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 362 >gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219] gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM 5219] Length = 431 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 212/378 (56%), Gaps = 11/378 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ + G+ T +Q + + KDV+ AQTG+GKT AFG+ L + Sbjct: 10 NLSKDIERAVEDMGFEEPTPIQSQSIPYLMEGKDVIGQAQTGTGKTAAFGIPALEMLDVK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + L + PTRELA QV E+ L + GG + R+ + L+ G Sbjct: 70 SKKVQ------VLVLCPTRELANQVAEEMSKLAKYQNTKMLPVYGGQPIDRQIKALRRGV 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIV+GTPGR+ DH++ K L + +K VVLDEADEMLD+GFR+DIEFIL +P K++ ++F Sbjct: 124 HIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEMLDMGFREDIEFILSRAPGKKQTVLF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L K YQ++ V + I+ V + + + ++ + K Sbjct: 184 SATMPKPIIKLTKKYQQNPQMVKTVHKKLTVPQIEQYYFEVKDNAKTEVLCRLIDIYNFK 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++VFC+T+ +V + + L + V + G++ Q +R + R G +ATDVAA Sbjct: 244 SSLVFCNTKKNVDKQVETLKARGYLVDGMHGDMRQAQRERVMSNFRKGEIETLVATDVAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RGID+ +E V + ++ + E+ +HR GRTGRAG++G+++ F +++ R+ + + + N Sbjct: 304 RGIDVESIEAVFNYDIPQDEESYVHRIGRTGRAGKEGVAITFAFGKDI-RKIKTIQKHTN 362 Query: 365 VSVVWEPAPS---VEAIR 379 V +V + PS VE IR Sbjct: 363 VKIVRKNVPSQSDVEDIR 380 >gi|197337401|ref|YP_002157747.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein [Vibrio fischeri MJ11] gi|197314653|gb|ACH64102.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein [Vibrio fischeri MJ11] Length = 462 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 9/370 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L GY +T +Q L L+ KDV+ +TGSGKT AFGL L + L + RF Sbjct: 17 QNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGLLANLNVK--RFRVQ 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S L + PTRELA QV +E+ L A + V GGV + L++GAHI+VGT Sbjct: 75 S----LVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEHGAHIIVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R LN+ +L VLDEAD ML++GF+D I+ +LD +P KR+ L+FSAT P Sbjct: 131 PGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNLLFSATFPP 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVF 250 I ++A D + A E +++ I+ V DR A+ +L H ++ ++F Sbjct: 191 QIKSIADRIMNDPIMTK-AEETVENTSINQHFFKVGDFEDRLEALQILLLKHQPESTVIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ L + F V AL G+L Q++R AL + + +ATDVAARG+D+ Sbjct: 250 CNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L+ V++ ELS +PE +HR GRTGRAG KG+++ + + ++ N+ + E Sbjct: 310 ESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEYMNIDIRDE 369 Query: 371 PAPSVEAIRE 380 PS + ++E Sbjct: 370 ALPSADYLKE 379 >gi|126668612|ref|ZP_01739565.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp. ELB17] gi|126626942|gb|EAZ97586.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp. ELB17] Length = 457 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 134/352 (38%), Positives = 203/352 (57%), Gaps = 8/352 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q L L +DV+ A TGSGKT AFG+ L + + +FS S L Sbjct: 21 GFTEPTDIQTRALPHCLAGQDVIALAHTGSGKTAAFGIGLIEHV--KPKQFSVQS----L 74 Query: 79 AIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV + L E A+ + + GGVS+ + L +GAHIVVGTPGR+ D Sbjct: 75 VLCPTRELADQVAKALRELARARDNIKILTLCGGVSIGPQIGSLAHGAHIVVGTPGRIAD 134 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H++ L + + VVLDEAD MLD+GF++ +E IL +P +R+ L+FSAT +I L+ Sbjct: 135 HLQKGTLKLDRVHTVVLDEADRMLDMGFQEAVENILSHAPAQRQTLLFSATWPESIRKLS 194 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 +Q++ V V +E + +SDI ++ + R AIV +L H + +VFC+ + Sbjct: 195 AGFQREPVDVRAQTE-KMNSDIAEVFYEISGNQRTRAIVALLSQHQPTSCLVFCAMKHQC 253 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 L++ F +AL G+L Q++R + L + +V +ATDVAARG+D+ L LV+ Sbjct: 254 DELAAELSQQGFSALALHGDLEQRDRDSVLVRFANQSCQVLVATDVAARGLDIKSLPLVV 313 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 +AE + +PE HR GRTGRAG +G++V + + + RL E +V+W Sbjct: 314 NAEPAGDPEIHTHRIGRTGRAGEQGLAVTLCSPSQGHKINRLESERGATVIW 365 >gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC 35937] gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC 35937] Length = 636 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 143/406 (35%), Positives = 226/406 (55%), Gaps = 15/406 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 22 KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQLKPQ 79 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 80 ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P+KR++ +FSAT+ P Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 256 RTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +++ G + M LL +++ E Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 416 >gi|312143554|ref|YP_003995000.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp. 'sapolanicus'] gi|311904205|gb|ADQ14646.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp. 'sapolanicus'] Length = 529 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 166/525 (31%), Positives = 268/525 (51%), Gaps = 35/525 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I I +A+ + G+ T +Q + L KD++ AQTG+GKT AFG+ L + A Sbjct: 10 DISNEILKAVDDMGFEETTPIQSNAIPAVLAGKDIVGQAQTGTGKTAAFGIPLLEEMDAN 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 P A+ + PTRELA+QV EL+ L Y K + V GG S+ R+ R L Sbjct: 70 K------KDPQAIILCPTRELAIQVSEELKRLAKYKKRIYTLPVY-GGQSIQRQIRALNK 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IV+GTPGR+ DHIR L ++ + VLDEAD MLD+GF DDIE +L P+ R+ L Sbjct: 123 GVQIVIGTPGRVMDHIRRGTLKLNQINYFVLDEADVMLDMGFIDDIETVLRDIPEDRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 FSATI +I L++ YQK++ + +A E I+ + D+ A+ +L + Sbjct: 183 FFSATIPKSIRRLSRKYQKNSQFLKVAHEKLTVPSIEQYYYELRRHDKLKALTRLLDLNN 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVFC+TR V L + A+ G L+Q +R + R+G + +ATDV Sbjct: 243 PELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMGKFRNGIIEILVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFRE 362 AARGID+ D+E V + +L + + +HR GRTGRAG+ G + FV+ +++ + + + + Sbjct: 303 AARGIDVDDIEAVFNYDLPQDTDYYVHRIGRTGRAGKSGKAFSFVVGKDIYKLRD-IQKY 361 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLAKHDPE----KIA 417 + + PS + I E ++ ++ +++S + D K ++++ D E +IA Sbjct: 362 TKTKIKRDKIPSADDIEEAKFEQFNEELSAYIESEKLD--KYIELIENIIDEEFSAIEIA 419 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 A ++ + D + +S F G G +++G K Sbjct: 420 AALMK------------KSFNKADNDDTEKVESPNFGDTGAE----PGMVRLFINIGKKD 463 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDLL 521 + R ++ + +G+ IGAI + + TFVEV + G D+L Sbjct: 464 RISPRHIVGAIAGETGLPGGLIGAIDIYDNFTFVEVPREKGHDVL 508 >gi|294789414|ref|ZP_06754651.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella muelleri ATCC 29453] gi|294482627|gb|EFG30317.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella muelleri ATCC 29453] Length = 471 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 199/348 (57%), Gaps = 2/348 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEND 67 Q I AL+E+GY T +Q + L D+L +AQTG+GKT AF L +L N Sbjct: 33 QEITSALAEQGYETPTPIQATAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYANA 92 Query: 68 RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 SPA P+ L + PTRELA Q+ + + + V GGV++ ++ DL+ G Sbjct: 93 STSPAMHPVRMLVLTPTRELADQIDQNTQNYIKNLPLRHTVLFGGVNMDKQTTDLRTGCE 152 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV T GRL DHI+ K +N++ ++ VVLDEAD MLD+GF DDI I+ P+ R+ L+FS Sbjct: 153 IVVATVGRLLDHIKQKNINLNKVEIVVLDEADRMLDMGFIDDIRQIMQMLPRPRQTLLFS 212 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT +PAI LA+++ V +A++N +++++ + V + + ++ Sbjct: 213 ATFAPAIRKLAQDFMNSPETVEVAAQNATNANVEQHVIAVDAYRKRELLERLIVDLQMPQ 272 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVFC T+ S + + L A+ G+ SQQ R + L + G RV +ATDVAAR Sbjct: 273 VIVFCKTKQSADQVARDLVRRGLSANAIHGDKSQQTRLDVLSQFKSGELRVLVATDVAAR 332 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 G+D+ +L VI+ EL + E+ +HR GRTGRAG G+++ ++ N Q+ Sbjct: 333 GLDIAELPFVINYELPTQAEDYVHRIGRTGRAGADGVAISMMDDNEQK 380 >gi|269960877|ref|ZP_06175247.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] gi|269834317|gb|EEZ88406.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] Length = 459 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 138/393 (35%), Positives = 215/393 (54%), Gaps = 13/393 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L Y ++T +Q L L ++DV+ +TGSGKT AFGL + S L + R Sbjct: 17 ETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +L + PTRELA QV +E+ L + + V GG+ + + L++GAHI+VGT Sbjct: 75 ----SLVLCPTRELADQVAKEIRTLGRSIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ +N+ L +VLDEAD MLD+GF+D ++ I++++PK+R+ L+FSAT Sbjct: 131 PGRILDHLEKGRINLEELNTLVLDEADRMLDMGFQDALDAIIEAAPKQRQTLLFSATFPE 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + + S + S Y + RD A+ N+L H ++A+VFC Sbjct: 191 KIEQIAQRIMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANLLLTHQPESAVVFC 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V L F V+ L G+L Q+ER AL + + +ATDVAARG+D+ Sbjct: 251 NTKKEVQNVADELHHKGFSVIDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVD 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +L+ V + ELS +PE +HR GRTGRAG KG++ + R R+ ++ VV Sbjct: 311 NLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLDMDVVPAT 370 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 P+ + Q+ Q + +I G +K+ V Sbjct: 371 LPA------KSNQQPYQAKMVTINIDGGKKQKV 397 >gi|330897234|gb|EGH28653.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 557 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 170/552 (30%), Positives = 287/552 (51%), Gaps = 33/552 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE P ++ ++ GY +++Q+ + + D++ AQTG+GKT AF L + Sbjct: 11 FELHPNILAAVIAT-GYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILH--- 66 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P+ P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 67 ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ + Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETK 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R ++ ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEE---ITPVSLVSGRDRFRDDSRAFKVGGGSRDNF---K 464 +AA LR G L A E + P + G R R + R + Sbjct: 419 ALAAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPVPLAE 478 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK 538 Query: 525 VKLDK--GIQLK 534 +K + G QLK Sbjct: 539 LKDTRVAGKQLK 550 >gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] Length = 642 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 165/534 (30%), Positives = 274/534 (51%), Gaps = 50/534 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 +L++ GY + +Q A + L +DV+ AQTG+GKT AF L S + D PA Sbjct: 34 SLADLGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPALSRMAELADTNGPAK 93 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELA+QV YAK V GG + L+ GA +VVGT Sbjct: 94 TPQILVLAPTRELALQVAEAFTS-YAKYLPNFTVLPVYGGSPYGPQLNGLRRGAQVVVGT 152 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI L++S+L+ VVLDEADEML +GF ++++ IL+++P+ +++ +FSAT+ Sbjct: 153 PGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDKQVALFSATMPR 212 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A Y ++ V + S+ ++I R + V + + +A+ IL + I F Sbjct: 213 TIRRIASEYLRNPQEVAVKSKQSTGTNITQRYLQVMGAHKLDAMTRILESETFEGVIAFV 272 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L F A++G++ QQ+R ++ +R G+ + +ATDVAARG+D+ Sbjct: 273 RTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDILVATDVAARGLDVE 332 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGRKG ++ F+ P+ + R E+ R+ V Sbjct: 333 RISHVVNFDIPHDTESYVHRIGRTGRAGRKGDAILFMTPREKYLLRAIEKATRQ---PVT 389 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLD----SIQGDE----KKMVDVLLAKH---DPEKIA 417 PS++++ +R Q+ F D +I G + +++V+ ++H D +IA Sbjct: 390 QMQLPSLDSVNDRRIQK------FTDRIDKTISGQDLTTFREIVEKFASEHEDLDQLEIA 443 Query: 418 AGFLRIHRAG--LCAPEEITPVSLVSGRDRF-------------RDDSRAFKVGGGSRDN 462 A + + G L E PV S + R RA K Sbjct: 444 AALALMAQGGRPLLMTE---PVMSPSKKARMDRPERGGERGERGDRGPRARKTAA----- 495 Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +G++ + L+VG + + + ++ L G N IG I ++ D T VE+ A+ Sbjct: 496 -EGNAMYRLAVGRRNRVQPGSIVGALANEGGFNSSEIGGIEIRSDHTLVELPAE 548 >gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase DEAD homolog) [Mycobacterium abscessus ATCC 19977] gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase DEAD homolog) [Mycobacterium abscessus] Length = 598 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 162/523 (30%), Positives = 264/523 (50%), Gaps = 36/523 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEN 66 P+V+ A+S+ GY +++Q A + P L DV+ AQTG+GKT AF + + S + L Sbjct: 32 PEVL-RAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSKIDLTSK 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 D AL +APTRELA+QV A + + I GG S + L+ GA Sbjct: 91 DT-------QALVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKRGA 143 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DH+ L++SHL +VLDEADEML +GF +D+E IL +P+ +++ +F Sbjct: 144 QVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVALF 203 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L K Y D V + I ++ +I R + VA + +A+ IL + Sbjct: 204 SATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFE 263 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF T+ + L F A++G+++Q +R + ++ G + +ATDVAA Sbjct: 264 AMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAA 323 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ + E+ +HR GRTGRAGR G +V + + + + + Sbjct: 324 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIEKTTGA 383 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ----GDEKKMVDVLLAKHDPEK------ 415 + EP PSVE + +AQR+ + F D+I E ++ L+ ++ + Sbjct: 384 KLAEEPLPSVEDV---NAQRVTK---FRDAITAALAAPEVELFRRLVEDYERDNNVPVAD 437 Query: 416 IAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472 IAA + R G L P+ R R + G R G + + ++ Sbjct: 438 IAAALAVLSRDGEQFLLQPDP-------PREPRHERGERPDRGPRGERPRTPGLATYRIA 490 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 VG + K ++ + G++R G I ++PD + VE+ A Sbjct: 491 VGKRHKVMPGAIVGAIANEGGLHRSDFGHITIRPDHSLVELPA 533 >gi|239818170|ref|YP_002947080.1| ATP-dependent RNA helicase DbpA [Variovorax paradoxus S110] gi|239804747|gb|ACS21814.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] Length = 476 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 136/336 (40%), Positives = 200/336 (59%), Gaps = 9/336 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQ++ L++ GY +T++Q A L P L KD++ A+TGSGKT AF LAL S L Sbjct: 24 PQMLAN-LTQLGYTQMTAIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLSNL--NPR 80 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF A A+ + PTRELA QV E+ L A+ + V GGV++ + L++GAH Sbjct: 81 RF----AIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQIASLEHGAH 136 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVVGTPGR+ DH+ + LN+ L +VLDEAD MLD+GF DDI + PK+R+ L+FS Sbjct: 137 IVVGTPGRIMDHLERENLNLEALNTLVLDEADRMLDMGFFDDIVKVARQCPKERQTLLFS 196 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I LA+ + K+ ++ + +++ + S I R V S+R +A+ +L + + Sbjct: 197 ATYPEGIAKLAQQFMKNPEQITVQAQH-EGSKIRQRWYQVKESERLHAVSLLLDHFRPVS 255 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 + FC+T+ +VL F +AL GEL Q+ER L + V +ATDVAAR Sbjct: 256 TLAFCNTKQQCRDLVEVLQGQGFSALALFGELEQRERDQVLVQFANRSCSVLVATDVAAR 315 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 G+D+ LE VI+ +++ + E +HR GRTGR G++G Sbjct: 316 GLDIAQLEAVINVDVTPDAEIHIHRIGRTGRVGQQG 351 >gi|333029481|ref|ZP_08457542.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] gi|332740078|gb|EGJ70560.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] Length = 606 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 136/353 (38%), Positives = 201/353 (56%), Gaps = 12/353 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE + I +A++E GY + VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKNFEELGVSAEILKAITEMGYEHPMPVQEEVVPYLLGENNDVVALAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115 + + EN P +L + PTREL +Q+ +L + Y+K G+ V GG S+ Sbjct: 61 IIQKVDVEN------RVPQSLVLCPTRELCLQIADDL-YNYSKYIKGLKVIPVYGGSSID 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ G HI+V TPGRL D + +++S +K VV+DEADEML++GF + I IL Sbjct: 114 SQIRSLKRGVHIIVATPGRLLDLMNRGTVSLSTIKNVVMDEADEMLNMGFTESINSILQD 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 PK R L+FSAT+SP I ++KNY ++ + I +N ++ + V D+ A+ Sbjct: 174 VPKDRNTLLFSATMSPEIARISKNYLQNPKEITIGRKNEGSQNVKHVVYKVHAKDKYAAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I ++ I+FC TR +L + + +L GELSQ +R +Q R Sbjct: 234 KRIADFYPQIYGIIFCRTRRETQEIADLLIKDGYNADSLHGELSQAQRDAVMQKFRMRNI 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+ G S+ +I Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAII 346 >gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1] gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1] Length = 470 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 146/432 (33%), Positives = 234/432 (54%), Gaps = 22/432 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L KDV+ AQTG+GKT AFG+ + + +N L Sbjct: 2 GFEEATPIQAGAIPLALEGKDVIGQAQTGTGKTTAFGIPMVEKIDVKNPNVQ------GL 55 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELA+QV EL + V V GG + R+ R ++ HI+VGTPGR+ DH Sbjct: 56 IIAPTRELAIQVSEELYKIGQDKRVNVLAVYGGQDIQRQIRAMKKNPHIIVGTPGRMLDH 115 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I + L + ++ +VLDEADEML++GF +DIE IL + P R+ L+FSAT+ I +A Sbjct: 116 INRRTLKLGNVSTLVLDEADEMLNMGFIEDIESILKNVPDNRQTLLFSATMPGPIRKIAN 175 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 N+ D V++ S+ I+ V ++ + + +L + AI+F T+ V Sbjct: 176 NFMTDPETVSVKSKEMTVPHIEQYFVKAHEKEKFDVLSRLLDVQSPELAIIFGRTKRRVD 235 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + + G+LSQ +R L+ ++GR V +ATDVAARG+D+ + V + Sbjct: 236 ELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVATDVAARGLDISGVTHVYN 295 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWEPAPSV 375 ++ +PE+ +HR GRTGRAG++GM++ FV P+ M R E+ +++ + +P S Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEKTTKKSMTQM--KPPTSN 353 Query: 376 EAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431 EA+ + QR+ + L +++++ +E + M LL HD +I A LR+ + Sbjct: 354 EALEGQ--QRLAMEKL-VETVKSNELQNYRGMAKELLEDHDSVEIVAAALRL----MTKE 406 Query: 432 EEITPVSLVSGR 443 + TPV + R Sbjct: 407 PDDTPVQISEER 418 >gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3] gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3] Length = 593 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 167/521 (32%), Positives = 256/521 (49%), Gaps = 45/521 (8%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + +Q + L +D + AQTG+GKT AFGL + +++ Sbjct: 16 DAVKDMGFEEPSPIQVLAVPALLAGRDAVGQAQTGTGKTAAFGLPILEKVIS-------G 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA+QV EL L A K GV + GG + R+ R L GA +VVGT Sbjct: 69 KGVQALVLCPTRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFRALAKGAQVVVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH++ L + + VVLDEADEMLD+GFR+DIE IL+ +P + ++FSAT+ P Sbjct: 129 PGRIIDHLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDGCQRILFSATMPP 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+K + ++ + IA + I+ V + +A+ +L G + A+VFC Sbjct: 189 PIRELSKRFLREPEMLTIAHKMLTIPAIEQTYYEVRPYQKMDALCRVLDSQGFRKALVFC 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 ST+ V T L + +Q L G+L+Q +R +Q R + +ATDVAARGID+ Sbjct: 249 STKRGVDEVTTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLEILVATDVAARGIDVD 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 D++ VI+ ++ + E +HR GRTGRAGR G + + Q + + R + Sbjct: 309 DVDAVINYDMPHDVEKYVHRVGRTGRAGRVGSAFTFVTMREQYKLRDIIRCTKARIKQGR 368 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P++ + R+L++ E+ +V+ LA+ PE G R A L Sbjct: 369 LPTLRDVDNIRTSRLLEEVRQTVEAGTPERWLALVEDFLAERFPEGGVTG--REMAAAL- 425 Query: 430 APEEITPVSLVSGRDRFRDDS------------RAFKVGGGSRDNFKGSSW--------- 468 + L+ RD D+ R+ GG SRD G S Sbjct: 426 -------LKLLMQRDFGNQDASREPDVFAEPPRRSAPDGGPSRDARGGDSSNPRGRKNSA 478 Query: 469 ----FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505 +SVG K R L+ + SGI+ + IGAI ++ Sbjct: 479 PMTKLRVSVGHTHKVSPRELVGAIAGESGISSRDIGAIGIR 519 >gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 133/340 (39%), Positives = 201/340 (59%), Gaps = 4/340 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +AL+E+GYV+ T +Q + L+ +DV+ +AQTG+GKT F L + LL + Sbjct: 27 ILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQRLLQHASHSA 86 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + V GGV + + L+ G IV Sbjct: 87 SPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTAILRAGVEIV 146 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K +N+S + +V+DEAD MLD+GF D++ I++ PK+R+ L+FSAT Sbjct: 147 IATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLLFSAT 206 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA ++Q + V + +A N ++ V + + +A+ I+R K I Sbjct: 207 FSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFIIRQRELKQVI 266 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF +T+ SR + L + A+ G+ +Q ER AL+ + G+ V +ATDVAARG+ Sbjct: 267 VFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLVATDVAARGL 326 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 D+ +L VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 327 DIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLF 366 >gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780] gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780] Length = 523 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 192/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + H++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQHVETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPKHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|218768426|ref|YP_002342938.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491] gi|121052434|emb|CAM08770.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491] Length = 457 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 206/356 (57%), Gaps = 18/356 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY N T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A+++ +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQDTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E + Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364 >gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865] gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865] Length = 643 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 143/406 (35%), Positives = 227/406 (55%), Gaps = 15/406 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 22 KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQLKPQ 79 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 80 ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P+KR++ +FSAT+ P Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 256 RTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRSIERATRQPIEEMQ 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +++ G + +M LL +++ E Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIEMYRDLLQRYESE 416 >gi|261251266|ref|ZP_05943840.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891] gi|260938139|gb|EEX94127.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891] Length = 458 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 205/370 (55%), Gaps = 9/370 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + E L GY +T +Q+ L L KDV+ +TGSGKT F L L S L + Sbjct: 9 NLRPELTETLDSLGYTEMTPIQQQALPMVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVK 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124 R L + PTRELA QV +E+ L + V GG+ + + L++G Sbjct: 69 RFRVQ------TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHG 122 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHI+VGTPGR+ DH+ +++ L +VLDEAD MLD+GF D I+ I+D+ P+KR+ L+ Sbjct: 123 AHILVGTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIDAVPEKRQTLL 182 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHG 243 FSAT I +LA + V + S Q S I+ + L +RD+A+ +L H Sbjct: 183 FSATFPDNIDSLAAKVMVNPEMVKVES-THQKSTIEQKFYKLNTTEERDDALEALLLTHK 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++++VFC+T+ V T L F VV L G++ Q+ER AL M + + +ATDV Sbjct: 242 PESSVVFCNTKKEVQNVTDELGHRGFSVVELHGDMEQREREQALTMFANKSISILVATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ +L+ V + ELS +PE +HR GRTGRAG KG++ + + R R+ Sbjct: 302 AARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARIDEYM 361 Query: 364 NVSVVWEPAP 373 ++++ P Sbjct: 362 DIAINASELP 371 >gi|226325568|ref|ZP_03801086.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758] gi|225206051|gb|EEG88405.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758] Length = 531 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 149/512 (29%), Positives = 258/512 (50%), Gaps = 34/512 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ G+ + +Q + + D++ AQTG+GKT AFG+ L ++ Sbjct: 15 IQKAVRYMGFEEASPIQAKAIPAMISGIDLIGQAQTGTGKTAAFGIPLL-------EKVD 67 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIV 128 P L A+ + PTRELA+QV E+ L G+ V GG + ++ R L++G IV Sbjct: 68 PKLKKLQAIVLCPTRELAIQVADEIRNLSRYMHGIKVLPIYGGQDIVKQIRSLKSGTQIV 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 +GTPGR+ DH+R K + + + VVLDEADEML++GFR+DIEF+L P++R+ ++FSAT Sbjct: 128 IGTPGRVMDHMRRKTMKLDFVHTVVLDEADEMLNMGFREDIEFVLSGVPEERQTVLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I + K +Q +A + + + +I+ V ++ + +L + + ++ Sbjct: 188 MPKPIMEITKKFQNNAKVIKVTKKELTVPNIEQYYYDVKPKKKEEVLSRLLDIYSPRLSV 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+T+ V L + L G++ Q++R +Q R G+ + +ATDVAARGI Sbjct: 248 VFCNTKKQVDLLVNALLGRGYFAAGLHGDMKQEQRDRVMQGFRTGKTEILVATDVAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ ++E V + +L + E +HR GRTGRAGR+G + + + + + R + Sbjct: 308 DVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRAFSFVSGKEVYKLKEIQRYCKTKIY 367 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI--QGDEKKMVDVLLAKHDPEK-----IAAGFL 421 + PS+ + + IL D ++ + Q D M++ + + + + +AA FL Sbjct: 368 AQKVPSLNDVANTKMENILDD---VERVIEQEDLDMMINAIEERVNNSEFTAMDMAAAFL 424 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481 +I C E ++ +D G G G +++G KQ+ Sbjct: 425 KI----CCGMTE-------DNKNTEENDWEFGDTGAGE----DGMVRLFINIGKKQRVRP 469 Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++ + SG++ + IG I + TFVEV Sbjct: 470 GDILGAIAGESGMDGKLIGTIDMYDKYTFVEV 501 >gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parasanguinis F0405] gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parasanguinis F0405] Length = 536 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 194/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + +N + AL Sbjct: 20 GFVEASPIQEQTIPLGLEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDN------TVIQAL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + H++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348 >gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905] gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905] Length = 513 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 148/447 (33%), Positives = 236/447 (52%), Gaps = 26/447 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + ++ G+ T +QE + + +DVL AQTG+GKT AFG+ L + + Sbjct: 8 NISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIEKIDPK 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N AL IAPTRELA+QV EL + V + GG + R+ R L+N Sbjct: 68 NPNIQ------ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNKP 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DHI + L + ++ +VLDEADEML++GF DDI IL++ P +R+ L+F Sbjct: 122 QIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAERQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ PAI +A+ + +D V I ++ +ID V A ++ + + +L H + Sbjct: 182 SATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQPE 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ V + L+ + + G+LSQ +R + L+ ++ + + +ATDVAA Sbjct: 242 LAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G++V FV P+ M R+ E Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYL--RIVEETT 359 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--------GDEKKMVDVLLAKHDPEKI 416 + P D + Q L LD+++ GD + + +L H+ + Sbjct: 360 KKRMTPLRPPTT-----DEALVGQQRLALDTLEGLIANNNLGDYRTLASEILDNHEAIDV 414 Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGR 443 A LR L + TPV++ R Sbjct: 415 VAAALR----SLTKEPDDTPVTISEER 437 >gi|104780746|ref|YP_607244.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48] gi|95109733|emb|CAK14434.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas entomophila L48] Length = 562 Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 166/554 (29%), Positives = 282/554 (50%), Gaps = 40/554 (7%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++ L+ GY +++Q+ + L D++ AQTG+GKT AF L + + + Sbjct: 15 PNIVAAVLAT-GYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVSK- 72 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 P AL +APTRELA+QV E YAK GV V GG + + R ++NGA Sbjct: 73 -----REPQALILAPTRELALQVATAFET-YAKQMPGVNVVAVYGGAPMGPQLRAIRNGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRLCDH+R +S ++ +VLDEADEML LGF DD+E I D+ P R+ ++F Sbjct: 127 QIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTVLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I ++A+ + ++ V I S+ + + ID ++V + A++ +L Sbjct: 187 SATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I F T+ + L ++ AL+G+++Q +R + ++DGR + +ATDVAA Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + R Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQ 366 Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFL 421 V P+ +A+ + +++ PL ++ + ++ D L A P ++A L Sbjct: 367 KVAEARLPNAQAVLDARIKKLTNSLAPLVAEA-EATHGELFDRLTAALGCSPRALSAALL 425 Query: 422 RIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF-------------- 463 R G L E P+ + + R R R + G R + Sbjct: 426 RKATNGQALDLATVEREQPL-VPTYTPRERSGERTER---GERSDRGDRGDRERRAPMPL 481 Query: 464 -KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522 +G ++G++ A+ L+ + G+ R +IG I+V+ + +E+ DG++ L Sbjct: 482 AEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLL 541 Query: 523 RTVKLDK--GIQLK 534 +K + G QLK Sbjct: 542 TKLKDTRVAGKQLK 555 >gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia R551-3] Length = 646 Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 210/372 (56%), Gaps = 13/372 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A++ GY + +Q A + L +DVL AQTG+GKT AF L + S + + + Sbjct: 20 VMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQIK-- 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL +APTRELA+QV + +K G V GG ++ L+ G HIVV Sbjct: 78 ----PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGVHIVV 133 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P KR++ +FSAT+ Sbjct: 134 GTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQVALFSATM 193 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I +A+ Y +D V V IA++ ++I R V+ + +A+ IL I+ Sbjct: 194 PPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMII 253 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+A L A++G++ Q +R + M+++G+ + +ATDVAARG+D Sbjct: 254 FARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGLD 313 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366 + + V++ ++ + E+ +HR GRTGRAGR G ++ F P + M R+ ER R+ Sbjct: 314 VERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQPIEE 373 Query: 367 VVWEPAPSVEAI 378 + PSVEA+ Sbjct: 374 MQL---PSVEAV 382 >gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6] gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6] Length = 594 Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 163/534 (30%), Positives = 265/534 (49%), Gaps = 38/534 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 + Q + +A+ + G+ + +Q + L KD + AQTG+GKT AFGL + Sbjct: 9 GLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPIL------ 62 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 ++ + + AL + PTRELA+QV EL L K GV V GG + R+ R L G Sbjct: 63 -EKIASGKSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRALAKG 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DH++ L ++ + VVLDEADEMLD+GFR+DIE IL+ SP + ++ Sbjct: 122 AQVVVGTPGRVIDHLQRGTLRLNEARIVVLDEADEMLDMGFREDIELILEQSPADCQRVL 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I L+K + ++ + IA + I+ V + +A+ +L G Sbjct: 182 FSATMPQPIRELSKRFLREPEMLTIAHKMLTVPAIEQVYYEVRPYQKMDALCRVLDSQGF 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + A+VFC+T+ SV T L + +Q L G+++Q +R + R + +ATDVA Sbjct: 242 RKALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ D++ VI+ ++ + E +HR GRTGRAGR+G + + Q + + R Sbjct: 302 ARGIDVDDVDAVINYDIPHDVEGYVHRIGRTGRAGREGKAFTFVTVREQYKIREIIRYTK 361 Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPE------KI 416 + P++ + ++L + +S + +V+ +H P+ I Sbjct: 362 ARIQPGQLPTLRDVSNIRTSKLLDEVRQTLAESSLDRWRVLVEDFQTEHFPDGDASSRDI 421 Query: 417 AAGFLRI---------HRAG-----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462 +A L++ G AP+ + + R + SR + G SR Sbjct: 422 SAALLKLLMQRDFGNQDNVGEVDELTMAPQRPAKNAEAKSKGRMQPLSRRQESGPMSR-- 479 Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + VG R L+ + SGI +S+GAI +Q + + VE+SA+ Sbjct: 480 ------LHIDVGQAHDVTPRALVGAITGESGIPGRSVGAIDIQDNFSIVEISAE 527 >gi|166711384|ref|ZP_02242591.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 634 Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 144/406 (35%), Positives = 226/406 (55%), Gaps = 15/406 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 22 KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 79 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 80 ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P+KR++ +FSAT+ P Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V V IA++ + I R V + +A+ IL I+F Sbjct: 196 AIRRIAQTYLKDPVEVTIAAKTTTSASIRQRYWWVNGLHKLDALTRILEVEPFDGMIIFA 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A+ + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 256 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 316 RISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRSIERATRQPIEEMQ 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +++ G + M LL +++ E Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 416 >gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 514 Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 155/524 (29%), Positives = 265/524 (50%), Gaps = 61/524 (11%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +A+ + G+ + +Q ++ L+ DV+ A+TG+GKT+A+G + Sbjct: 7 NLNEKILKAIDDMGFEEPSKIQSEVIPVLLQGSDVIGQAETGTGKTLAYGAPII------ 60 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N+ S L + PTRELA+QV EL + + V + GGV + R+ + ++ G Sbjct: 61 NNIGSNEGKVFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++GTPGR+ D I+ L ++ +K +VLDEADEMLD+GF DDI+ I++ + K+R+ +MF Sbjct: 121 DIIIGTPGRVLDLIKRDILRLNDVKYLVLDEADEMLDMGFIDDIKEIINHTNKERQTMMF 180 Query: 186 SATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT+ I LAK Y K DA ++I + S + + V +R ++ IL Sbjct: 181 SATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEP 240 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ V T+ + + V + G++SQ +R N L+ ++G +ATDVA Sbjct: 241 SSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFLVATDVA 300 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ +L VI+ L + E+ +HR GRTGRA R G++ ++ +R+ RE Sbjct: 301 ARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIERETK 360 Query: 365 VSVVWEPAPSVEAIRE-------RDAQRILQD-------PLFLDSIQGDEKKMVDVLLAK 410 + + P+++ I + +D +R+L++ PL ++ +E +VDV A Sbjct: 361 CKIRRKELPTIDDIFQVKYNKMIKDIKRVLENDGYKRFVPLAME--LDEEYNLVDVAAAL 418 Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 D + G++ + +D D K F Sbjct: 419 MD--------------------------MYYGKELYYND-----------DEPKYVRLF- 440 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 +++G K K R L+ +L I+++ IG I + TF++ S Sbjct: 441 INLGRKDKLNRRTLLKLLMDIGDISKEDIGTIDIFDKFTFIDAS 484 >gi|66046848|ref|YP_236689.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|302187695|ref|ZP_07264368.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae 642] gi|63257555|gb|AAY38651.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|330972316|gb|EGH72382.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 557 Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 172/552 (31%), Positives = 286/552 (51%), Gaps = 33/552 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 11 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P+ P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 67 ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R ++ ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEE---ITPVSLVSGRDRFRDDSRAFKVGGGSRDNF---K 464 +AA LR G L A E + P + G R R + R + Sbjct: 419 ALAAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPVPLAE 478 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK 538 Query: 525 VKLDK--GIQLK 534 +K + G QLK Sbjct: 539 LKDTRVAGKQLK 550 >gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae NEM316] gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909] gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 18RS21] gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae H36B] gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae CJB111] gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316] gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae A909] gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 18RS21] gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae CJB111] gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae H36B] Length = 528 Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 205/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + E++ AL IAPTRELAVQ EL GV V GG S+ ++ + Sbjct: 61 NKIHTEDNTIQ------ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I + + ++D V V +++ + + ++ Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|146282848|ref|YP_001173001.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501] gi|145571053|gb|ABP80159.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri A1501] Length = 553 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 168/549 (30%), Positives = 287/549 (52%), Gaps = 32/549 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S GY + +Q + L D++ AQTG+GKT AF L + S + PA Sbjct: 20 AISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILS-------KIDPAK 72 Query: 74 -APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL +APTRELA+QV E Y+K GV V GG + + + ++ GA ++V Sbjct: 73 REPQALILAPTRELALQVATAFET-YSKQMPGVSVVAIYGGAPMGPQLKAIRQGAQVIVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++FSAT+ Sbjct: 132 TPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSVLFSATLP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +I +A+ + ++ + IA++ + + I+ ++V + A++ +L I F Sbjct: 192 HSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFDALIAF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L ++ AL+G+++Q +R ++ ++DGR + +ATDVAARGID+ Sbjct: 252 VRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + R N V Sbjct: 312 PRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQKVAEA 371 Query: 371 PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFLRIHRA 426 P+ + + + +++ PL D+ + +++D L+A P +AA LR Sbjct: 372 RLPNAQQVLDARIKKLTSSLAPLVADA-ETTHGELLDKLVADIGCSPRALAAALLRKATN 430 Query: 427 G----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN----FKGSSWFSLSVGSKQK 478 G L E+ P+ SG R R D R + G R +G + +G++ Sbjct: 431 GQALTLAEVEKEQPLVPTSG-PRERSD-RPERSGDRERRAPVPLAEGRARCRTPLGARDG 488 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG 538 AR L+ + G+ R++IG I+V+ + VE+ DG+D L +K + +GG Sbjct: 489 IAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLGKLKDTR------VGG 542 Query: 539 EKPDFRGYK 547 ++ R Y+ Sbjct: 543 KQLKLRRYR 551 >gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 903] gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC 903] Length = 523 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 194/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + +N + AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDN------TVIQAL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + H++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348 >gi|253682634|ref|ZP_04863431.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873] gi|253562346|gb|EES91798.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873] Length = 476 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 208/376 (55%), Gaps = 8/376 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I + + GY + T VQE ++ L++KD++V +QTGSGKT +FG+ + +L E Sbjct: 7 NLSNEILKTIKMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIPVCEKVLLE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N + P L + PTRELAVQ+ ++ + + G V ++ L+ Sbjct: 67 NKK------PQVLILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLKQRV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR DHI + +S ++ +++DEAD+ML++GF D +E ++ PK R ++F Sbjct: 121 HIVVGTPGRTFDHIEKGNMELSDIRYLIIDEADKMLNMGFIDQVEDVIKRLPKDRVTMLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HGA 244 SAT+ I L Y + ++ I+ +N +DI + SDR +++N + Y Sbjct: 181 SATLEEKIEKLCVKYMNNPEKIEISKKNIT-TDIIEQEYYEVESDRKFSLLNKIIYTERP 239 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC+T+A V + F AL G + Q++R +Q + GR +ATDVA Sbjct: 240 DSCIIFCNTKAEVGSIAIKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLVATDVA 299 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ ++ VI+ E+ S E+ +HR GRTGRAG KG S+ ++ + RR + + Sbjct: 300 ARGIDIEEITHVINYEVPSEKESYVHRIGRTGRAGHKGKSITLVSEYENRRFKSIEEYIG 359 Query: 365 VSVVWEPAPSVEAIRE 380 SV + PS E ++E Sbjct: 360 YSVPKKEIPSEEEVQE 375 >gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial match) [Herminiimonas arsenicoxydans] gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas arsenicoxydans] Length = 826 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 140/380 (36%), Positives = 212/380 (55%), Gaps = 15/380 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + L E GY + +Q A + L DVL AQTG+GKT AF L + S + + Sbjct: 13 NLSEPLLRVLKELGYEAPSPIQAATIPLLLNNSDVLGQAQTGTGKTAAFALPILSRIDIK 72 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 + P AL +APTRELA+QV + YA G V GG S + L+ Sbjct: 73 Q------TTPQALVLAPTRELAIQVAEAFQR-YASHIPGFHVLPIYGGQSYGAQLSALRR 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G H+VVGTPGR+ DH+ L++S LK +VLDEADEML +GF DD+E IL +P+ R+ Sbjct: 126 GVHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDVETILQKTPEARQTA 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI +A Y +D + +A++ +I R LV+ + A+ IL Sbjct: 186 LFSATMPSAIKRIATTYLRDPELITVAAKTGTADNIRQRYWLVSGMQKLEALTRILEAET 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ L F A++G++ QQ+R +Q ++DG+ + +ATDV Sbjct: 246 FDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLF 360 AARG+D+ + VI+ ++ +PE+ HR GRTGRAGR G ++ F+ P +N+ + ER Sbjct: 306 AARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIERAT 365 Query: 361 REANVSVVWEPAPSVEAIRE 380 R+ ++V+ PSVE + + Sbjct: 366 RQP-IAVL--DLPSVEVVND 382 >gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM 11300] gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM 11300] Length = 591 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 137/376 (36%), Positives = 207/376 (55%), Gaps = 11/376 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ERG + +Q L L KD++ A+TG+GKT+AF L + L A + R S Sbjct: 15 LAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQNLTAPDGRGSRERG 74 Query: 75 --PLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A+ IAPTRELA QV E ++K+G + GG + + L+ G +VVG Sbjct: 75 RLPRAIVIAPTRELAKQVAEE----FSKSGPQLSTVTVYGGAAYGPQENALRRGVDVVVG 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ L++S ++ VLDEADEML +GF D IE IL +P R+ ++FSAT++ Sbjct: 131 TPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAARQTMLFSATLN 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 I LA+ Y ++ V V++ E + + +++ V V + R + ++L + + AI Sbjct: 191 DEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRT-RTRVLADLLTVYNPEKAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ L + AL G+L+Q +R AL R GR V +ATDVAARG+ Sbjct: 250 VFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+P+++LV+ L +PE+ +HRSGRTGRAGR G ++ + R L V Sbjct: 310 DIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENRELRNLEYRTGVQFK 369 Query: 369 WEPAPSVEAIRERDAQ 384 P P+ + ++ A+ Sbjct: 370 ERPLPTPKEVQAASAR 385 >gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris StLB046] Length = 517 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 153/443 (34%), Positives = 238/443 (53%), Gaps = 18/443 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + ++ G+ T +QE + + +DVL AQTG+GKT AFG+ L + + Sbjct: 8 NISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPLIEKIDPK 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N AL IAPTRELA+QV EL L V + GG + R+ R L+N Sbjct: 68 NPNIQ------ALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRALKNKP 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DHI + L + ++ +VLDEADEML++GF DDI IL++ P R+ L+F Sbjct: 122 QIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDRQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ PAI +A+ + KD V I ++ +I+ V ++ +A+ +L + Sbjct: 182 SATMPPAIRKIAETFMKDPEIVKIKAKELTMENIEQFFVKATEREKFDALSRLLDSQKPE 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ V ++ L F + G+LSQ +R + L+ ++G+ + IATDVAA Sbjct: 242 LAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G++V FV P+ M R+ E Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYL--RIVEETT 359 Query: 365 VS--VVWEPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 P S EA+ + DA + L + L ++ G +++ LL +D + A Sbjct: 360 KKRMTPLRPPSSEEALVGLQEDAMQSLVE-LVQNNDLGTYRELAAKLLENNDALDLVAAA 418 Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443 L+ + + TPVSL R Sbjct: 419 LK----SITKEPDATPVSLSEER 437 >gi|330953563|gb|EGH53823.1| helicase [Pseudomonas syringae Cit 7] Length = 557 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 172/552 (31%), Positives = 286/552 (51%), Gaps = 33/552 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 11 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P+ P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 67 ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPESR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R ++ ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKMTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEE---ITPVSLVSGRDRFRDDSRAFKVGGGSRDNF---K 464 +AA LR G L A E + P + G R R + R + Sbjct: 419 ALAAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPVPLAE 478 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK 538 Query: 525 VKLDK--GIQLK 534 +K + G QLK Sbjct: 539 LKDTRVAGKQLK 550 >gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae COH1] gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae COH1] gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813] Length = 528 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 205/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + E++ AL IAPTRELAVQ EL GV V GG S+ ++ + Sbjct: 61 NKIHTEDNTIQ------ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I + + ++D V V +++ + + ++ Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|270265065|ref|ZP_06193328.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13] gi|270040999|gb|EFA14100.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13] Length = 655 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 179/570 (31%), Positives = 277/570 (48%), Gaps = 55/570 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AF L L L A Sbjct: 21 ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDAS------LK 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV + ++ TGV V GG + R L+ G IVVGTP Sbjct: 75 APQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + KD V I S DI ++ A+V L AI+F Sbjct: 195 IRRITRRFMKDPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRFLEAEDFDAAIIFVR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 255 TKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR R + R +++ Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIPEVE 373 Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421 P+ E + ER A ++ Q ++ + M LLAK PE+ +AA L Sbjct: 374 LPNAELLGERRLAKFAAKVQQ------QLESSDLDMYRALLAKLQPEEELEMETLAAALL 427 Query: 422 RI---HRAGLCAPEEITPVSLVSGRDRFRD--------------DSRAFKVGGGS----- 459 ++ R + P+ PV R F D D+R GG+ Sbjct: 428 KMAQGERPLILPPD---PVFKPRQRREFNDRDDRGSDRGNDRRRDARPDSRDGGAERPRR 484 Query: 460 -RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----S 514 R + + + VG E R ++ + I+ + IG I++ + +E+ Sbjct: 485 ERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAGHSTIELPKGMP 544 Query: 515 ADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 + + RT L+K + ++ LG +P R Sbjct: 545 GEILSHFTRTRILNKPMNMQLLGDAQPHER 574 >gi|169837346|ref|ZP_02870534.1| ATP-dependent RNA helicase [candidate division TM7 single-cell isolate TM7a] Length = 477 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 248/462 (53%), Gaps = 23/462 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLV-SAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ALS++G+ + +Q+ ++ L+E+ L+ AQTG+GKT AFG+ + T+ A+ Sbjct: 16 ALSKKGFEEPSEIQKLVIPELLKERTHLIGQAQTGTGKTAAFGIPILETIEADK------ 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELA QV E+ L + + V GG S+ + + L++G IVVGTP Sbjct: 70 -TVRALILAPTRELANQVADEIYSLKGEKDLKVLAVYGGASIENQIKKLKSGVDIVVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D +R K L + L VLDEADEML++GF +DIE IL+ + +++ML FSATI A Sbjct: 129 GRVMDLMRKKILKVDKLDYFVLDEADEMLNMGFLEDIEAILEKTNDEKKMLFFSATIPKA 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +AK + + + +A + + + V D+ A+ +L Y IVFC Sbjct: 189 IMAIAKKFMPEHKLLKVAKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQDFYGIVFCR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T++ V T L + + G+++Q R AL + + + +ATDVAARGID+ + Sbjct: 249 TKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKILTILVATDVAARGIDVSN 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 L VI+ + E+ +HR GRTGRAG+KG+++ FV P+ + A+ + R + E Sbjct: 309 LTHVINYSIPQEAESYVHRIGRTGRAGQKGVAITFVTPREASKLAQ-IKRITKTEIKREH 367 Query: 372 APSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P+VE I E + +L D + +++ ++ L+ D +++ A LR Sbjct: 368 IPNVEEILEAKKEALLAYVDEIIMENDFDAYSELAQRLMDGRDAKQVLASVLRHVYEDEF 427 Query: 430 APE---EITPVSLVSGRDRFRDDSRAFKVGGGSRDN--FKGS 466 PE EIT V + + D +R F + GS+D +KG+ Sbjct: 428 LPENYNEITDVKV-----KIDDKTRLF-IALGSKDGSLYKGN 463 >gi|322514213|ref|ZP_08067275.1| superfamily II helicase [Actinobacillus ureae ATCC 25976] gi|322119906|gb|EFX91915.1| superfamily II helicase [Actinobacillus ureae ATCC 25976] Length = 607 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 148/422 (35%), Positives = 232/422 (54%), Gaps = 16/422 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +A++E G+VN + +Q+ + L +DVL AQTGSGKT AF L L LA+ Sbjct: 13 LPQSILDAVNEIGFVNPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 D P L +APTRELA+QV E GV V GG + R L+ G+ Sbjct: 69 D--PTQHHPQMLVMAPTRELAIQVADACEQFTKNMKGVRVVTVYGGQRYDIQLRALKQGS 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S L+++VLDEADEML +GF DD+E ++ P+ + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + + KD V I + R DI LV +++A++ L Sbjct: 187 SATMPEPIRRITRRFMKDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ T++ + ++ AL+G+++QQ R L ++ GR + +ATDVAA Sbjct: 247 AAIIFTRTKTGTIDITELCERNGYRAAALNGDMTQQAREQTLAKLKSGRLDILVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362 RGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L ++ Sbjct: 307 RGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKK 366 Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 V P+ E + E+ ++ + L ++ + + D+ A D E++AA Sbjct: 367 PIDEVAI---PNHEILMEKRREKFKARVSAQLEHHDLEKYRELLEDLFTADQDHEELAAA 423 Query: 420 FL 421 + Sbjct: 424 MM 425 >gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4] gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4] Length = 533 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 147/423 (34%), Positives = 225/423 (53%), Gaps = 13/423 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L KDV+ AQTG+GKT AFGL + + N L Sbjct: 25 GFEEATPIQAQTIPLALEGKDVIGQAQTGTGKTAAFGLPMLQKIDVNNRNVQ------GL 78 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELA+Q EL L + V V GG + R+ R L++ HIVVGTPGRL DH Sbjct: 79 VIAPTRELAIQTQEELFRLSRDKKIRVQVVYGGADISRQIRALKDAPHIVVGTPGRLLDH 138 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + H++ +VLDEADEML++GF DDIE I+ P +R+ L+FSAT+ PAI + Sbjct: 139 IKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQTLLFSATMPPAIKRIGV 198 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + + V I + S I+ V ++ + + + + I+F T+ V Sbjct: 199 RFMSNPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFDVQTPELTIIFGRTKRRVD 258 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L ++ + G+LSQQ+R + L+ + G+ + +ATDVAARG+D+ + V + Sbjct: 259 ELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDILVATDVAARGLDISGVTHVYN 318 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWEPAPSV 375 ++ +PE+ +HR GRTGRAG++G+SV F+ P M R E L ++ + P + Sbjct: 319 YDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVIEDLTKKTMTPL--RPPTNA 376 Query: 376 EAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFLR-IHRAGLCAPEE 433 EA + I + +D+ D +K LL + E +AA FL+ + + P + Sbjct: 377 EAFEGQIKASIDEVGSIIDANGLDRYEKAAAQLLETYTAEDLAAAFLKSVTKDADEVPVK 436 Query: 434 ITP 436 ITP Sbjct: 437 ITP 439 >gi|229495897|ref|ZP_04389623.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas endodontalis ATCC 35406] gi|229317210|gb|EEN83117.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas endodontalis ATCC 35406] Length = 587 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 139/341 (40%), Positives = 201/341 (58%), Gaps = 20/341 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +A+S G+ VQ A++ P L E D++ AQTG+GKT A+GL L L + D Sbjct: 14 DAVSALGFTEAMPVQAAVI-PYLLEDNIDLIALAQTGTGKTAAYGLPLLEKLRPQRD--- 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P AL ++PTREL +Q+ +LE +AK V V GG S+ + R L+ G IV Sbjct: 70 ---FPQALVLSPTRELCLQIASDLES-FAKFLPEVHVLAVYGGSSIETQIRSLKRGVDIV 125 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D +R + +++ + VVLDEADEML++GF +D++ IL P++R +L+FSAT Sbjct: 126 VATPGRLLDLMRRRAISLERIHTVVLDEADEMLNMGFSEDLKAILSEIPEERNLLLFSAT 185 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 +S I T+A +Y D + I +N +S+I + LV R A+ I+ + + I Sbjct: 186 MSREIATIAHSYLHDPKEITIGRKNEANSNIRHIYYLVPARQRYLALKRIVDFFPSIYGI 245 Query: 249 VFCSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 VFC TR TK +AEHL + AL G+LSQ++R +Q G ++ +ATDVA Sbjct: 246 VFCRTRVE----TKEIAEHLIADGYNADALHGDLSQEQRDRVMQRFCSGHLQLLVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+D+ +L VIH L + EN HRSGRT RAG+ G+S+ Sbjct: 302 ARGLDVDNLTHVIHYGLPDDVENYTHRSGRTARAGKTGLSI 342 >gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750] gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750] Length = 571 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 151/513 (29%), Positives = 263/513 (51%), Gaps = 24/513 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I A+ + G+ + +Q + L DV+ AQTG+GKT A+ + + + + Sbjct: 7 NIDERILRAVEDMGFEETSPIQTQAIPAVLEGIDVIGQAQTGTGKTAAYSIPMLQKINPD 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 P A+ + PTRELAVQV E+ L AK + + V GG + R+ + L+ Sbjct: 67 ------VKKPQAIVLCPTRELAVQVAEEIRKL-AKYMSDIKVLPVYGGQEIVRQIKSLKA 119 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I+VGTPGR+ DH+R K + + V+LDEADEMLD+GFR+D+E IL +P++R+ + Sbjct: 120 GVQIIVGTPGRVMDHMRRKTVKFDSVSMVILDEADEMLDMGFREDMETILTETPEERQTV 179 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I +A+ +QKDA + + + S+ID V ++ + ++ + Sbjct: 180 LFSATMPKPIMEIARKFQKDARIIKVVRKELTVSNIDQFYYEVRPKNKTEILSRLIDIYN 239 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K ++VFC+T+ V L + + G++ QQ+R + R G+ + IATDV Sbjct: 240 PKLSVVFCNTKRQVDELISELKGRGYFADGIHGDMKQQQRDRVMDDFRSGKTEILIATDV 299 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ +++V + +L + E +HR GRTGRAG+ G+++ I + + + R Sbjct: 300 AARGIDVDGVDIVFNYDLPQDEEYYVHRIGRTGRAGKSGLALSFISGREVYKLKDIERYC 359 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-MVDVLLAKHDPEKIAAGFLR 422 ++ +P PS++ ++ I + I+ DE + M+D++ + E + + Sbjct: 360 KTKILAKPIPSLDDVKNTKMDGIFDK--IKEMIEADEHRAMLDMVEEHVNQEDYTSMDMA 417 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 + + + + V + F D A D + F ++VG K K Sbjct: 418 AALLKMIVGDTLDRIDEV---ENFHFDENA--------DTSRMVRLF-INVGKKDKITPA 465 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 ++ + SG+ + +GAI + + TFV+V A Sbjct: 466 NILGAIAGESGMPGRLVGAIDMMDNYTFVDVPA 498 >gi|123440819|ref|YP_001004810.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087780|emb|CAL10566.1| cold-shock dead-box protein A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 657 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 176/568 (30%), Positives = 279/568 (49%), Gaps = 50/568 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72 AL++ GY + +Q + L +DVL AQTGSGKT AFGL L + P+ Sbjct: 21 ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI-------DPSL 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELA+QV L GV V GG + R L+ G +VVGT Sbjct: 74 KAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQLRALRQGPQVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ LN+S+L +VLDEADEML +GF +D+E IL P + + +FSAT+ Sbjct: 134 PGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATMPE 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI + + + K+ V I S DI +V +++A+V L AI+F Sbjct: 194 AIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDALVRFLEAEDFDAAIIFV 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L + AL+G+++Q R L+ +++GR + IATDVAARG+D+ Sbjct: 254 RTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDILIATDVAARGLDVE 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + + +R + + R +++ Sbjct: 314 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQNIERTMKMTIPPVQ 373 Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421 P+ E + ER A ++ Q ++ + M LLAK PE+ +AA L Sbjct: 374 LPNAELLGERRLAKFAAKVGQ------QLESSDLDMYRALLAKLQPEEEFDIETLAAALL 427 Query: 422 RI---HRAGLCAPEEI-TPVSLVSGRD-------RFRDDS----RAFKVGGGSRD----- 461 ++ R + PE P + RD R R+DS R+ GG R Sbjct: 428 KMAQGERPLILPPEAPRRPQREFNTRDDRGSDRGRDRNDSRREPRSDSRDGGERPARRER 487 Query: 462 -NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516 + + + VG E R ++ + I+ + IG I++ + +E+ + Sbjct: 488 RDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 547 Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 + RT L+K + ++ LG +P R Sbjct: 548 MLSHFTRTRILNKPLNMQLLGDAQPHER 575 >gi|22536941|ref|NP_687792.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae 2603V/R] gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 2603V/R] Length = 528 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 205/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + E++ AL IAPTRELAVQ EL GV V GG S+ ++ + Sbjct: 61 NKIHTEDNTIQ------ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I + + ++D V V +++ + + ++ Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|319957469|ref|YP_004168732.1| dead/deah box helicase domain protein [Nitratifractor salsuginis DSM 16511] gi|319419873|gb|ADV46983.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis DSM 16511] Length = 477 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 147/403 (36%), Positives = 222/403 (55%), Gaps = 19/403 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F PQ + +A+ E G+ + VQ+ + L +D++ A TG+GKT AFGL + L Sbjct: 6 FNFKPQ-LAQAIKEAGFREPSPVQKEAIPLILEGRDLIAQAHTGTGKTAAFGLPVLQQL- 63 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 S + AL I PTRELA QV E+ + A GG S R+ + +Q+ Sbjct: 64 ------SCDGSVEALVIVPTRELATQVSDEIFRFGKALSIRTATVYGGSSYTRQIQHVQS 117 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 A +VV TPGRL D ++ +++S + V+LDEADEMLD+GF DDI+ I P+ R+ L Sbjct: 118 -ASVVVATPGRLIDLLQSGKISLSP-RFVILDEADEMLDMGFLDDIKEIFTHLPESRQTL 175 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S I TLA+ KD V+I N + I +V +RD+A+V +L Y Sbjct: 176 LFSATMSKEIRTLAQRILKDPATVSITGGNVTNEKIRQLFYVVDEPERDDALVRLLDYKN 235 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +I+FC + V R LA + L G++ Q++R ++ ++G+A + IATDV Sbjct: 236 PDKSIIFCRMKKEVDRLRDFLAAQGYDAKGLHGDMDQRQREATIRAFKNGQAEILIATDV 295 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ D+ V + L +PE+ +HR GRTGRAGR+G ++ ++ + R +R+ + Sbjct: 296 AARGLDVNDVSHVFNYHLPFDPESYVHRIGRTGRAGREGTAISIVSPHEFRSLQRIQKSV 355 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406 S+ P +E +R AQR D L IQ EK+ VD Sbjct: 356 GSSIESRIIPRIEEVR---AQR--SDAL----IQRIEKQEVDT 389 >gi|332160085|ref|YP_004296662.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|33332423|gb|AAQ11420.1| DeaD box RNA helicase [Yersinia enterocolitica] gi|318607355|emb|CBY28853.1| cold-shock DEAD-box protein A [Yersinia enterocolitica subsp. palearctica Y11] gi|325664315|gb|ADZ40959.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862020|emb|CBX72187.1| cold-shock DEAD box protein A [Yersinia enterocolitica W22703] Length = 657 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 176/568 (30%), Positives = 279/568 (49%), Gaps = 50/568 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72 AL++ GY + +Q + L +DVL AQTGSGKT AFGL L + P+ Sbjct: 21 ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI-------DPSL 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELA+QV L GV V GG + R L+ G +VVGT Sbjct: 74 KAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQLRALRQGPQVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ LN+S+L +VLDEADEML +GF +D+E IL P + + +FSAT+ Sbjct: 134 PGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATMPE 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI + + + K+ V I S DI +V +++A+V L AI+F Sbjct: 194 AIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDALVRFLEAEDFDAAIIFV 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L + AL+G+++Q R L+ +++GR + IATDVAARG+D+ Sbjct: 254 RTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDILIATDVAARGLDVE 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + + +R + + R +++ Sbjct: 314 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQNIERTMKMTIPPVQ 373 Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421 P+ E + ER A ++ Q ++ + M LLAK PE+ +AA L Sbjct: 374 LPNAELLGERRLAKFAAKVGQ------QLESSDLDMYRALLAKLQPEEGFDIETLAAALL 427 Query: 422 RI---HRAGLCAPEEI-TPVSLVSGRD-------RFRDDS----RAFKVGGGSRD----- 461 ++ R + PE P + RD R R+DS R+ GG R Sbjct: 428 KMAQGERPLILPPEAPRRPQREFNTRDDRGSDRGRDRNDSRREPRSDSRDGGERPARRER 487 Query: 462 -NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516 + + + VG E R ++ + I+ + IG I++ + +E+ + Sbjct: 488 RDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 547 Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 + RT L+K + ++ LG +P R Sbjct: 548 MLSHFTRTRILNKPLNMQLLGDAQPHER 575 >gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] Length = 450 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 134/340 (39%), Positives = 191/340 (56%), Gaps = 2/340 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +AL+E GYV T +Q + L D++ AQTG+GKT AF L + LL + Sbjct: 15 ILKALTEAGYVTPTPIQAQAIPLALEGHDLMAGAQTGTGKTAAFALPMLQKLLPHASAST 74 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELAVQV ++ T + V GGV + + L+ G I+ Sbjct: 75 SPAKHPVRALILVPTRELAVQVEESVKAYAKHTNLRSLVVYGGVDIKTQTPHLKTGVEIL 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DHI K + ++ ++ +VLDEAD MLD+GF ++ IL P++R+ LMFSAT Sbjct: 135 VATPGRLLDHIEQKTVLLNQVQMLVLDEADRMLDMGFMPALKRILALLPRQRQSLMFSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I L++++ + +A N +I + LV S + + +LR AK I Sbjct: 195 FSNEIKKLSEDFMNYPTLIEVARSNASAENITQKVYLVEQSGKHQLLAQLLRGDDAKQVI 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ + SR K L A+ G+ SQ ER AL + GR V IATDVAARG+ Sbjct: 255 VFTKTKLTASRLAKQLQREGVSADAIHGDKSQLERMQALDAFKQGRVAVLIATDVAARGL 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ L +VI+ E+ E+ +HR GRTGRAG G ++ ++ Sbjct: 315 DIDSLPMVINYEIPHAAEDYVHRIGRTGRAGASGTAISLV 354 >gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma proteobacterium HTCC2148] gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma proteobacterium HTCC2148] Length = 618 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 141/393 (35%), Positives = 222/393 (56%), Gaps = 17/393 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL++ GY +++Q A + + +DVL AQTG+GKT AF L + + L A + + Sbjct: 21 KALADVGYETPSAIQAATIPALIEGRDVLGQAQTGTGKTAAFALPILAQLQASSKK---- 76 Query: 73 SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L +APTRELA+QV + Y K VV + GG + R LQ G +VVG Sbjct: 77 --PQVLVLAPTRELAIQVAEAFQKYARYLKDFHVVPIY-GGADYRGQLRQLQRGVQVVVG 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R L++S L+ +VLDEADEML +GF DD+E+IL+ +P R++ +FSAT+ Sbjct: 134 TPGRVMDHMRRGSLDLSALRTLVLDEADEMLRMGFIDDVEWILEQTPDDRQIALFSATMP 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI +AK + + V V I + + I R ++A + +A+ IL IVF Sbjct: 194 TAIARIAKQHLNNPVHVAIEVQTMTNKSIRQRVWMMAGVHKLDALTRILEVEDFDGVIVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR + + + LA + AL+G++ Q++R + ++ G + +ATDVAARG+D+ Sbjct: 254 VRTRIATAEIAEKLAARGYSAAALNGDIPQKQREATIDNLKRGTIDILVATDVAARGLDV 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + VI+ ++ + E +HR GRTGRAGR+G ++ N +RR R +A ++ Sbjct: 314 ERISHVINYDIPYDVEAYVHRIGRTGRAGREGDAIL-FAANRERRLLRAIEKATGTIEKM 372 Query: 371 PAPSVEAIRERD----AQRILQDPLFLDSIQGD 399 PSVE + ++ QRI + LD+++ D Sbjct: 373 ELPSVEQVTDKRIGKFKQRITE---TLDTVELD 402 >gi|88860375|ref|ZP_01135013.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas tunicata D2] gi|88817573|gb|EAR27390.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas tunicata D2] Length = 609 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 212/383 (55%), Gaps = 10/383 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +++ + GYV + +Q + L KDVL AQTG+GKT AF L L + + A Sbjct: 11 NLSPEILKSVEKLGYVTPSEIQAQCIPFLLNGKDVLGLAQTGTGKTAAFALPLLNNIDAT 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 P L +APTRELA+QV E YA+ G+ V GG S + + L+N Sbjct: 71 ------VKHPQVLVLAPTRELAIQVAEAFEQ-YAQFIKGINVLALYGGQSYNVQLSGLRN 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G ++V TPGRL DH+ + HLKA+VLDEADEML +GF +D+E I+ +PK+++ Sbjct: 124 GPQVIVATPGRLIDHLNRGTIKFDHLKALVLDEADEMLRMGFIEDVETIMAKTPKQKQTC 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + Y +DA V+I++ N ++ + A + ++NAI+ L+ Sbjct: 184 LFSATMPQQIQKICSTYLEDAEHVHISARNSTVESVE-QVYWQANTHKNNAIIRFLQAET 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AIVF TR ++L + F L+G+++QQ R ++ +++G + IATDV Sbjct: 243 YDGAIVFVRTRNDTVEIAELLEQAGFSAAPLNGDMNQQARERTVERLKNGLLDIVIATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ L LVI+ ++ + E +HR GRTGRAGR G ++ + N + + + Sbjct: 303 AARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERHLLRNIIQHT 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRI 386 ++ PS + E+ Q++ Sbjct: 363 KSTINNVDMPSTALVEEKRIQQL 385 >gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931] gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931] Length = 695 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 167/525 (31%), Positives = 265/525 (50%), Gaps = 26/525 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ AL E GY + +QE + L KDV+ AQTG+GKT AF L S + D Sbjct: 113 PRVLS-ALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFALPALSRMAELAD 171 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + L +APTRELA+QV + V GG + L+ GA Sbjct: 172 INGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQ 231 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L++S+L+ +VLDEADEML +GF +D+E IL+ +P +++ +FS Sbjct: 232 VVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQVALFS 291 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ +I +A+ Y D V + ++ ++I R + V S + +A+ +L Sbjct: 292 ATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVENYDG 351 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ L FQ A++G++ QQ R + +RDGR + +ATDVAAR Sbjct: 352 IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 411 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREA 363 G+D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ FV P+ M R+ E+ R+ Sbjct: 412 GLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEKATRQK 471 Query: 364 NVSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--EK 415 EP P+ + + QR + ++I+ ++ +K+++ +HD E Sbjct: 472 -----VEPMHMPTAQDVNSSRKQRFAEQ--ITETIETEDLNFFRKIIEDYENEHDTTAED 524 Query: 416 IAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471 IAA I + G L ++I S D R K G D +G + L Sbjct: 525 IAAALAVIAQQGRAFFLDENDDIARKSRAFADDTKDCGKRGPKKGRNHSD--EGMVNYKL 582 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +VG + +A ++ L GI IG+I ++ T V + D Sbjct: 583 NVGRASRVKASAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPED 627 >gi|149279609|ref|ZP_01885738.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39] gi|149229645|gb|EDM35035.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39] Length = 620 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/342 (38%), Positives = 206/342 (60%), Gaps = 18/342 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A+ + G+ N T +QE + P L E D + AQTG+GKT AFGL L + ++++ Sbjct: 17 AVKDLGFENPTPIQEQSI-PVLLEGNNDFVGLAQTGTGKTAAFGLPLLELIDFKSNK--- 72 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTREL +Q+ +++ T G V GG ++ ++ R+++NG IVV Sbjct: 73 ---PQALILCPTRELCLQITNDIKNFSKNTSGANVVAVYGGANIMQQLREIRNGVQIVVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D I K ++ +++K VVLDEADEML++GF++DI IL ++P ++ +FSAT+ Sbjct: 130 TPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKTWLFSATMP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P + +AKNY V + + ++N + +I++ V D+ A+ I+ ++ +VF Sbjct: 190 PEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYTVRARDKYAALKRIVDFNPEIFGVVF 249 Query: 251 CSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 C T+ T+ +AEHL + AL G+LSQQ+R +Q RD ++ IATDVAAR Sbjct: 250 CKTKMD----TQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRHMQLLIATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ ++ VI+ L E+ HRSGRTGRAG+ G+S+ ++ Sbjct: 306 GIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIV 347 >gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21] gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21] Length = 532 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 153/517 (29%), Positives = 259/517 (50%), Gaps = 25/517 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I AL + G+ + +Q+ + L D++ AQTG+GKT AFG+ + ++ + Sbjct: 13 NLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQSIDEK 72 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N AL ++PTREL +QV E+ + V V GG + R+ R L++G Sbjct: 73 NRHVQ------ALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKHGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+GTPGRL DH+R +++ H+ +VLDEADEMLD+GF +DIE I+ P +R+ ++F Sbjct: 127 QVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTMLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +++K Y + V I E ID D+ + + IL Sbjct: 187 SATMPRPILSISKKYMRTPKVVAIHKEIVTAPTID--QYYYETRDKVDGLCRILDTTDDC 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+FC T+ V LA ++ L G+LSQ +R ++ R + + +ATDVAA Sbjct: 245 KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RGID+ ++ V++ ++ +PE+ +HR GRTGRAG G+++ F+ P+ R+ + + R Sbjct: 305 RGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREF-RQLKLIERSVK 363 Query: 365 VSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 ++ P+ + E+ ++I+ + + D + + L +D IAA ++ Sbjct: 364 TKIIRGQLPTDANVLEKQREQIISKMQSILEQNQYHDYLPIAEALENDYDIHDIAAAAIK 423 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 + G A EE + D G+R G +++G K R Sbjct: 424 FMQEGNKALEE----------PQTADALPEALANTGAR---PGMVRLFINIGRSAKVTVR 470 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 ++ + + I +SIG I + +FVEV AD + Sbjct: 471 DIIQSIAIEAEIPAKSIGRISIYDKFSFVEVPADSAE 507 >gi|253689218|ref|YP_003018408.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755796|gb|ACT13872.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 460 Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 12/365 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY ++T VQ A L L DV A+TGSGKT AFG+ L ++ + F+ Sbjct: 19 LNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD--FTTQ-- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV +EL L +A+ ++ +C GG + ++ L + HIVVGTP Sbjct: 75 --ALVLCPTRELADQVSKELRRLARFAQNIKILTLC-GGQPMGQQLDSLVHAPHIVVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R + L++ LK +VLDEAD MLD+GF D I+ ++ +P R+ L+FSAT Sbjct: 132 GRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPEE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ R IA + ++ S I+ R R +++IL +H + +VFC+ Sbjct: 192 IEQISARVQRQPQRFEIADDVKE-SAIEQRFYETTKEQRLPLLISILGHHQPSSCVVFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L V+AL G+L Q++R L + RV +ATDVAARG+D+ + Sbjct: 251 TKRDCQSVFDALDMRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKE 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRTGRAG +G++V PQ M RA + + + W Sbjct: 311 LELVVNFELAFDPEVHVHRIGRTGRAGMQGLAVSLCTPQEMN-RANLIEDYLGMRIKWAA 369 Query: 372 APSVE 376 A S++ Sbjct: 370 ADSLD 374 >gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1001] gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001] Length = 486 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 131/347 (37%), Positives = 198/347 (57%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E GY T +Q + L +DV+ +AQTG+GKT +F L + LL + Sbjct: 22 ILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPHASTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + AV GGV ++ + L+ G I+ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSDQLRRGVEIL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y ++ + +A N +++ VA D+ A+V ++R K I Sbjct: 202 FSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRERNLKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQ 368 >gi|242280865|ref|YP_002992994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM 2638] gi|242123759|gb|ACS81455.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM 2638] Length = 517 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 136/382 (35%), Positives = 210/382 (54%), Gaps = 11/382 (2%) Query: 5 ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64 + +P I AL + G+ LT VQ L L +D++V A+TGSGKT AF L L L Sbjct: 38 DELPPSILNALDKTGWDKLTPVQSKSLPYQLYNRDLMVQAKTGSGKTGAFVLPLLEKL-D 96 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 N ++ AL + PTRELA QV RE E ++ +G+ V GGV +R +L+ G Sbjct: 97 PNINYT-----QALILVPTRELARQVEREAEKIFEGSGLRVLSVYGGVGYGHQREELEKG 151 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RML 183 AH+VVGTPGR+ DH+ + ++ L+ ++ DEAD ML +GF D+ + P++ Sbjct: 152 AHMVVGTPGRILDHLLKRTFDLEDLETLIFDEADRMLSIGFYPDMREVKSYLPRRPISTY 211 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT + L+K + ++++S+ ++ID+ V ++ ++ IL Sbjct: 212 MFSATFPEHVIRLSKEFMYKPQMLSLSSKQVHVTEIDHAYYEVPSMGKERQLMRILEMEN 271 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +AI+FC+T+A+V T VL F L+ +LSQ +R L +RDG R +ATD+ Sbjct: 272 PTSAIIFCNTKANVEFVTAVLNNFGFNAADLTSDLSQSKRERVLAQLRDGSVRFLVATDI 331 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+PDL VI E + E+ +HR+GRTGRAG G+++ ++ + +R+ Sbjct: 332 AARGIDVPDLSHVIMYEPPEDKESYIHRAGRTGRAGSSGVAISLVDVIQKIELQRIATAY 391 Query: 364 NVSVVWEPAPS----VEAIRER 381 N++ P +E I ER Sbjct: 392 NINFEIRELPDDKQVLETINER 413 >gi|157736313|ref|YP_001488996.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri RM4018] gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri RM4018] Length = 516 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 217/386 (56%), Gaps = 9/386 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N +++ +A+ E G+ + +QE + L +D++ A TG+GKT AFGL + + + A+ Sbjct: 7 NFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLPILNKIKAK 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S A+ I PTRELA+QV EL G+ A GG + R+ + ++N + Sbjct: 67 -------SGVEAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENSS 119 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGR D +RG ++I K V+LDEADEMLD+GF DDI+ I P+ R+ L+F Sbjct: 120 -VIVATPGRFLDLLRGDKISIKP-KFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLF 177 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI LAK K+ V + + +S I +V +RD+A++ + + K Sbjct: 178 SATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRLFDFKNPK 237 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +I+FC T+ V R + L F AL G++ Q++R A++ + + + IATDVAA Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ D+ V + L + E+ +HR GRTGRAG++GM++ ++ + R +++ + Sbjct: 298 RGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKIEKSIGT 357 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPL 391 + + P++ ++++ + Q L Sbjct: 358 KLESKVVPNIGLVKKKKFAELKQQVL 383 >gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8] Length = 532 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 155/511 (30%), Positives = 264/511 (51%), Gaps = 34/511 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I +A+ G+ T +Q A+ P ++ +DV AQTG+GKT AFG+ + + A Sbjct: 16 IAKAIENMGFEEPTPIQ-ALAIPLIQAGRDVTAQAQTGTGKTSAFGIPVIENIDASQRVV 74 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + + PTRELA+Q+ E L A + V GG + R+ + L NG HIV Sbjct: 75 Q------VIVLCPTRELAIQIAEEFSHLLAYLPKISVLPVYGGQPIERQLKALANGVHIV 128 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 +GTPGR+ DH++ + L++ H+ VVLDEAD+MLD+GFRDDIE IL P+KR+ L+FSAT Sbjct: 129 IGTPGRVMDHLKRRTLSLDHVSMVVLDEADQMLDMGFRDDIELILKRVPQKRQTLLFSAT 188 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I ++K +Q V + + I+ + V D+ +++ ++ + AI Sbjct: 189 LPKPIIEISKRFQNRPEFVRVEYQELTVPAIEQSYIEVRDRDKLDSLCRVIDVVDPQLAI 248 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+T+ + ++ L G++ Q +R + R G + IATDVAARGI Sbjct: 249 IFCNTKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRVMGGFRKGTIDILIATDVAARGI 308 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367 D+ D+++VI+ ++ + + +HR GRTGRAG+ G ++ FV ++ + E + + V + Sbjct: 309 DVEDVDMVINYDVPQDVDYYIHRIGRTGRAGKSGRAITFVTSRDFTKLRE-IQKYIKVQI 367 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAKHDPE----KIAAGFLR 422 +P P+ + + E+ + IL++ ++IQ G + ++ + + + +IAA L+ Sbjct: 368 PRKPLPTADDVVEQKTKTILEE--VRETIQKGGTEPYARIVEQESEGDLTTLEIAAALLK 425 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 I L G D + + G ++ G F L +G K + Sbjct: 426 IR--------------LEQGSDSHTEHAVPKDFGDTGAES--GMVRFFLGIGRDHKVAPK 469 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++ + +GI + IGAIR+ +FVEV Sbjct: 470 DIVGAIAGETGIPGKYIGAIRILDTYSFVEV 500 >gi|227538389|ref|ZP_03968438.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33300] gi|227241771|gb|EEI91786.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33300] Length = 603 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 166/527 (31%), Positives = 265/527 (50%), Gaps = 44/527 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVS-AQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+SE G+ + +QE + L D V AQTG+GKT AFGL L L FS Sbjct: 16 AISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPLLEQL-----DFS-Q 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTREL +Q+ ++LE Y VVAV GG ++ + R ++ G IVV Sbjct: 70 KHPQALVLCPTRELCLQIAKDLEKFAKYIDDVHVVAV-YGGANISDQLRQIRRGVQIVVA 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D I ++ S++K VVLDEADEML++GF++DI IL +P++++ +FSAT+ Sbjct: 129 TPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKTWLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +A+NY D V + + ++N +++I++ L+ D+ A I+ + IVF Sbjct: 189 REVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAKDKYAAFKRIVDSNPEIFGIVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ + L + + +L G+LSQQ+R ++ RD ++ IATDVAARGID+ Sbjct: 249 CRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATDVAARGIDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF---------------VIPQNMQRR 355 D+ VI+ L EN HRSGRT RAG+ G+S+ +I + +R+ Sbjct: 309 NDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHIEKIIGKPFERK 368 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415 E ++ +E + D Q P +++++ L+K D Sbjct: 369 QVPQGAEVCEKQLFSIVSKIENVEVNDDQITPFLPTIMENLEA---------LSKED--- 416 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDR---FRDDSRAFKVGGGSRDNFKGSSWFSLS 472 I F + + P + RD R D R + GGS KG + ++ Sbjct: 417 IIKRFASLEFNRFLDYYKNAPDLNIEARDNERGERGDRREDRSRGGS----KGYTRLFMN 472 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 +GS + ++ +C ++ I+ +SIG I ++ TF EV + V+ Sbjct: 473 LGSVDEFTRGDMLGFICNNAKISGKSIGKIDLKGVFTFFEVQDEEVE 519 >gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22] gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22] Length = 516 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 217/386 (56%), Gaps = 9/386 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N +++ +A+ E G+ + +QE + L +D++ A TG+GKT AFGL + + + A+ Sbjct: 7 NFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLPILNKIKAK 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S A+ I PTRELA+QV EL G+ A GG + R+ + ++N + Sbjct: 67 -------SGVEAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENSS 119 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGR D +RG ++I K V+LDEADEMLD+GF DDI+ I P+ R+ L+F Sbjct: 120 -VIVATPGRFLDLLRGDKISIKP-KFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLF 177 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI LAK K+ V + + +S I +V +RD+A++ + + K Sbjct: 178 SATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRLFDFKNPK 237 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +I+FC T+ V R + L F AL G++ Q++R A++ + + + IATDVAA Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ D+ V + L + E+ +HR GRTGRAG++GM++ ++ + R +++ + Sbjct: 298 RGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKIEKSIGT 357 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPL 391 + + P++ ++++ + Q L Sbjct: 358 KLESKVVPNIGLVKKKKFAELKQQVL 383 >gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase-like [Burkholderia sp. 383] gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383] Length = 527 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 131/347 (37%), Positives = 203/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 44 ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 103 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G ++ Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEVL 163 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 164 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 224 FSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 283 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ +Q ER AL + G +ATDVAARG+ Sbjct: 284 VFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGL 343 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L + E+ +HR GRTGRAG G ++ + N +++ Sbjct: 344 DIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390 >gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase domain-containing protein [Salinispora tropica CNB-440] gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440] Length = 579 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 160/517 (30%), Positives = 259/517 (50%), Gaps = 27/517 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY T +Q + P L +D+L A TG+GKT AF L + + A + P+AL Sbjct: 40 GYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPMLQRMPANRS----TTNPVAL 95 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELAVQV + G V GG + R+ R L G +VV TPGR DH Sbjct: 96 VLVPTRELAVQVSEAFHRYGKELGARVLPIYGGQPIGRQLRALDAGVDVVVATPGRALDH 155 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I L + + VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FSAT+ I +A+ Sbjct: 156 IARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVLFSATMPARIDGMAR 215 Query: 199 NYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 + D +R+ IA E + + A LV+ + + A+ +L AIVFC +R Sbjct: 216 AHLTDPIRILIAREKPVAGEAPRVRQSAYLVSRAHKPAALGRVLDVESPTAAIVFCRSRE 275 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 V R T+ + ++ AL G +SQ++R + +R G A + +ATDVAARG+D+ L Sbjct: 276 EVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARGLDVEQLSH 335 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375 V++ ++ S PE+ +HR GR GRAGR+G+++ + R + + R + + P+V Sbjct: 336 VVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIERVTGQRITIDKIPTV 395 Query: 376 EAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432 +R R Q L++ L D ++ + +V+ L + D ++A +R+ A E Sbjct: 396 ADLRNRRLELTQAALRESLLEDDLE-PFRVIVESLSDEFDLMEVALAAVRL------AHE 448 Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----------GSSWFSLSVGSKQKAEAR 482 P +L + R + G + G++ + +G + + Sbjct: 449 ATLPGALEEEEEIPEIAVRPPRAGRPGHEGRGERRPGRPRSAGTTQVFVGLGRRAGVRPQ 508 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 L+ + +G+N + IG+I + + VEV A D Sbjct: 509 DLVGAITGETGMNGRDIGSIEIADRFSLVEVPAGMAD 545 >gi|317504343|ref|ZP_07962329.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae DSM 15606] gi|315664534|gb|EFV04215.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae DSM 15606] Length = 625 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 166/533 (31%), Positives = 267/533 (50%), Gaps = 27/533 (5%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE + + I A+ E G+ + VQE ++ L K DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVNENIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHR 116 L + A++ A A+ ++PTREL VQ+ +L ++ G+ + GG + Sbjct: 61 LLQKVNAQD------RATQAIVLSPTRELCVQIADDLKDFSKYIDGMHIVPVYGGADIRP 114 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + R +++G ++V TPGRL D I + + + +VLDEADEML++GF D I I + Sbjct: 115 QIRAIKHGTQVIVATPGRLVDLINRGVMELEKVNNIVLDEADEMLNMGFSDSINAIFEQL 174 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 P+ R L+FSAT+S + +AK+Y D + + S N +++ LV D+ A+ Sbjct: 175 PEDRNTLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIYYLVHSKDKYLALK 234 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 I+ +H AI+FC T+A L + + AL G+LSQQ+R +Q R + Sbjct: 235 RIVDFHPRIFAIIFCRTKAETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQ 294 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 + +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+KG S+ +I + + Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHIKEKWKV 354 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVL----- 407 ++ ++ + P E I ++ +++ D + D DE + M D++ Sbjct: 355 RQIEKQIGKDFIDGELPKSEEICKKQLFKVMDDIMKTDV---DEDQIAPYMADIMRQFEY 411 Query: 408 LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF-- 463 + K D K + F R APE PV+ R + + KV G R + Sbjct: 412 VDKEDIIKKMVTVTFGRFLDYYQHAPEIEKPVAGKGSRSERGERNTRGKVSNGQRQHVAE 471 Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +G +++G +M L + RQ +G I + +++EV D Sbjct: 472 EGFRRLFINLGKSDGFYPGEIMQYLNKHVH-GRQEVGHIDLLQKFSYIEVPED 523 >gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054] gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia HI2424] gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia MC0-3] gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU 1054] gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia HI2424] gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia MC0-3] Length = 520 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/347 (38%), Positives = 202/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 44 ILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 103 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRRGVEIL 163 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 164 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 224 FSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 283 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ +Q ER AL + G +ATDVAARG+ Sbjct: 284 VFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGL 343 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L + E+ +HR GRTGRAG G ++ + N +++ Sbjct: 344 DIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390 >gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299] gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299] Length = 790 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 219/382 (57%), Gaps = 12/382 (3%) Query: 5 ENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 +N P + AL +RG L +Q ++L P L+ +DV+ A+TG+GKT+ F L + +L Sbjct: 136 DNFPLSDITKAALRKRGIETLFPIQASVLEPALQGRDVVGRARTGTGKTLGFSLPIIESL 195 Query: 63 LAE-NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 L+ ++R + P + +APTRELA QV +E++ A + +C+ GGV++ + R Sbjct: 196 LSNPSNRTDRSRNPRCIVLAPTRELANQVEKEIQ---ATVPSLRTLCVYGGVAISNQERP 252 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G IVVGTPGRL D I+ LN+ ++ VLDEAD+ML +GF +D+E I++ P++R Sbjct: 253 LRRGVDIVVGTPGRLIDLIQRGSLNLHDIEYCVLDEADQMLAVGFEEDVERIMEEIPEQR 312 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + +FSAT+ +T + + Y D V +++ + E + ID + + + R + ++ Sbjct: 313 QTFLFSATMPSWVTRITQKYLADHVTIDLVGSQEQKVADTIDVMSCACSHTSRTTILADL 372 Query: 239 LRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + +G AI F T+ T L + V L G+++Q +R L+ RDGR V Sbjct: 373 VTVYGKGAKAICFTQTKREADEVTAALGRRMATEV-LHGDIAQAQRERTLKRFRDGRFSV 431 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARG+D+ D++LV+H EL + E+ +HR GRTGRA +KG ++ + + R Sbjct: 432 LVATDVAARGLDITDVDLVVHYELPHDTESFVHRCGRTGRANKKGAAIAMYTPREKSRIR 491 Query: 358 RLFREANVSV-VWEPAPSVEAI 378 + RE V V P + E + Sbjct: 492 SIVRETGVKFRVINPPTAAEVM 513 >gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184] gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184] Length = 521 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/347 (38%), Positives = 202/347 (58%), Gaps = 2/347 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A+ E+GY T +Q + L +DV+ +AQTG+GKT +F L + LL + N Sbjct: 45 ILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 104 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G I+ Sbjct: 105 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRRGVEIL 164 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 165 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 224 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA Y ++ + +A N ++++ VA D+ A+V +LR G K I Sbjct: 225 FSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 284 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + L A+ G+ +Q ER AL + G +ATDVAARG+ Sbjct: 285 VFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGL 344 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ +L VI+ +L + E+ +HR GRTGRAG G ++ + N +++ Sbjct: 345 DIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 391 >gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 585 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 169/528 (32%), Positives = 277/528 (52%), Gaps = 42/528 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + GY +++Q A + L+ +DV+ AQTG+GKT AF L + S + + Sbjct: 32 KALKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALPVLSQMETGHKN---- 87 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV E A GV V GG ++ L+ G ++VGT Sbjct: 88 --PQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQQLSALRRGVDVIVGT 145 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF +D+E IL +P +++ +FSAT+ Sbjct: 146 PGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADTPSTKQVALFSATMPA 205 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Y D + + ++ ++I R ++V+ + +A+ IL + IVF Sbjct: 206 QIRRISAQYLNDPEEITVKTKTTTSANITQRYLIVSYQQKIDALTRILEVENFEGMIVFT 265 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + A++G+++Q +R + ++ G+ + +ATDVAARG+D+ Sbjct: 266 RTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSGKLDILVATDVAARGLDVE 325 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V++ +L + E+ +HR GRTGRAGR G ++ FV P+ +RR +A + E Sbjct: 326 RISHVVNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPR--ERRMLTAIEKATRQPLTE 383 Query: 371 PA-PSVEAIRERDAQRILQDPLFLDSIQ---------GDEKKMVDVLLAKHD-PEKIAAG 419 + PSV+ + +A R+ + F D+I + +V ++ HD PE A Sbjct: 384 MSLPSVDDV---NATRLTR---FDDAITTALEDTAAIATFRDVVAHYVSHHDVPEADVAA 437 Query: 420 FLRIHRAG----LCAPEEITPVSLVSGR-DRFRDDSRAFKVGGGSRDNF---KGSSWFS- 470 L + G L E + + R DR DSR GGSRD+ + S F+ Sbjct: 438 ALAVVAQGDTPLLLEEETLRQQRFDNDRPDRSSRDSR----DGGSRDSGPRRESSGRFAT 493 Query: 471 --LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++VG +Q+ E R ++ L G+ R GAI+++ D + VE+ AD Sbjct: 494 YRIAVGRRQRVEPRQIVGALANEGGLRRNDFGAIQIRQDFSLVELPAD 541 >gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sanguinis ATCC 49296] gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sanguinis ATCC 49296] Length = 525 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 192/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + KD V IA++ +D + V ++ + + +++ + AIVF T+ V Sbjct: 194 QFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTHLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|270262252|ref|ZP_06190524.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13] gi|270044128|gb|EFA17220.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13] Length = 460 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 204/360 (56%), Gaps = 12/360 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY +T VQ A L L+ +DV A+TGSGKT AFG+ L + A Sbjct: 19 LNELGYAEMTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLLDKINVSQ------VA 72 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGTP Sbjct: 73 AQALILCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGPQLDSLVHAPHIVVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ +H+R K L + LK +VLDEAD MLD+GF DDI+ ++ +P +R+ L+FSAT Sbjct: 132 GRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQTLLFSATYPSG 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + V + + Q S I+ R R +V+ +R++ + +VFC+ Sbjct: 192 IERISARVQRDPLNVEVDDGDDQTS-IEQRFYETTRDQRPAVLVSAIRHYQPSSCVVFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L V AL G+L Q++R L + RV +ATDVAARG+D+ + Sbjct: 251 TKRDCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKE 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRTGRAG G+++ PQ M+ RA + +V W P Sbjct: 311 LELVVNYELAFDPEVHVHRIGRTGRAGLNGLAISLCTPQEME-RAHAIEEYQRKAVNWAP 369 >gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] Length = 576 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 163/515 (31%), Positives = 259/515 (50%), Gaps = 20/515 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALS GY T +Q + P L +D+L A TG+GKT AF L LL Sbjct: 40 ALSALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFAL----PLLHRMPDGRAGG 95 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P+AL + PTRELAVQV G V GG + R+ R L G +VV TPG Sbjct: 96 EPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDLGVDVVVATPG 155 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R DHI L + L VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FSAT+ I Sbjct: 156 RALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEHAPQQRQTVLFSATMPSRI 215 Query: 194 TTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +A+ + D VR+ I E + + + A +VA + + A+ +L AIVF Sbjct: 216 DGMARQHLTDPVRIQIGREQQVAGETPRVRQSAYIVARAHKPAALGRVLDVESPTAAIVF 275 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C +R V R T+ + ++ AL G +SQ++R + +R G A + +ATDVAARG+D+ Sbjct: 276 CRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARGLDV 335 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L V++ ++ S PE+ +HR GR GRAGR+G+++ + R + + R + + Sbjct: 336 EQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTGQRIAID 395 Query: 371 PAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI-HRA 426 P+ +R R Q L++ L D ++ + +V+ L + D ++A +++ H A Sbjct: 396 KIPTAADLRNRRLELTQAALRESLLEDDLE-PFRVIVESLSDEFDMMEVALAAVKLAHEA 454 Query: 427 GLCAP------EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 +P EEI V++ R+ R G++ + +G + Sbjct: 455 --ASPGSDDDEEEIPQVAVRPPREARPGQEGRGGERRPGRPRSGGTTQVFIGLGRRAGVR 512 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + L+ + + ++ + IG+I + + VEV A Sbjct: 513 PQDLVGAITGETQVSGRDIGSIEIADRFSLVEVPA 547 >gi|45659052|ref|YP_003138.1| ATP-dependent RNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602298|gb|AAS71775.1| ATP-dependent RNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 521 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 205/376 (54%), Gaps = 7/376 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A+ E G+ + +Q + L+ KD++ AQTG+GKT AF + L E Sbjct: 15 NLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVE 74 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 + AL + PTREL +QV + L G V I GG + R+ R L+ Sbjct: 75 SKHLQ------ALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRKN 128 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IV+ TPGR+ DH+R +++ +K VVLDEADEMLD+GFR+D+EFIL +P R+ +M Sbjct: 129 PQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQTIM 188 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ + TL K +Q +++ + I+ + + + A+ ++ Y Sbjct: 189 FSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 248 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K A+VFC+T+A V ++L + AL G+L+Q++R + R G + +ATDVA Sbjct: 249 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEILVATDVA 308 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 RGID+ ++E V + +L + E+ +HR GRTGRAG+KG++ I +++ R Sbjct: 309 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 368 Query: 365 VSVVWEPAPSVEAIRE 380 + + P+++ + E Sbjct: 369 IKIEAGKIPTLDDLEE 384 >gi|257482687|ref|ZP_05636728.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626949|ref|ZP_06459903.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649408|ref|ZP_06480751.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. aesculi str. 2250] gi|330866127|gb|EGH00836.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889311|gb|EGH21972.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. mori str. 301020] gi|330986634|gb|EGH84737.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 559 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 172/555 (30%), Positives = 286/555 (51%), Gaps = 37/555 (6%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 11 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P+ P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 67 ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R + ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462 +AA LR G L A E P+ + + R R+ G R Sbjct: 419 ALAAALLRKATNGQALTLAAIERERPL-VPNNAPRGDRPERSGSSDRGDRPERERRAPVP 477 Query: 463 -FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 +G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 478 LAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL 537 Query: 522 RRTVKLDK--GIQLK 534 +K + G QLK Sbjct: 538 LTKLKDTRVAGKQLK 552 >gi|161501867|ref|NP_762119.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6] gi|319999566|gb|AAO07109.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6] Length = 459 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 201/365 (55%), Gaps = 9/365 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L GY +T +Q L L KDV+ +TGSGKT F L L S L R Sbjct: 17 TLDTLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSNLNVSRFRVQ--- 73 Query: 74 APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QV E+ L + V GG+ + + L++GAHI+VGTP Sbjct: 74 ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEHGAHILVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ ++++ L +VLDEAD ML++GF+D I+ I+D +P +R+ L+FSAT Sbjct: 131 GRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDVAPTQRQTLLFSATFPEQ 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVFC 251 I T+A ++ V + S Q S I+ R L +RDNA+ +L H ++ +VFC Sbjct: 191 IETIASKVMQNPEMVKVES-THQKSTIEQRFYQLENTEERDNALEALLLTHRPESTVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V T L F V+ L G++ Q+ER AL M + + +ATDVAARG+D+ Sbjct: 250 NTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVD 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +L+ VI+ ELS +PE +HR GRTGRAG KG+++ + R ER+ + V Sbjct: 310 NLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIEEYMGIDVHPAK 369 Query: 372 APSVE 376 P E Sbjct: 370 LPQPE 374 >gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 513 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 207/376 (55%), Gaps = 7/376 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A+ E G+ + +Q + L+ KD++ AQTG+GKT AF + L E Sbjct: 10 NLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIELLEVE 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 + AL + PTREL +QV + L G V + GG + R+ + L+ Sbjct: 70 SKHLQ------ALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRKN 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IV+ TPGR+ DH+R + ++ +K VVLDEADEMLD+GFR+D+EFIL +P R+ +M Sbjct: 124 PQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQTIM 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I TL K +QK +++ + I+ + + + A+ ++ Y Sbjct: 184 FSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K A+VFC+T+A V ++L + AL G+L+Q++R + R+G + +ATDVA Sbjct: 244 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 RGID+ ++E V + +L + E+ +HR GRTGRAG+KG++ I +++ R Sbjct: 304 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 363 Query: 365 VSVVWEPAPSVEAIRE 380 + + P+++ + E Sbjct: 364 IKIEAGKIPTLDDLEE 379 >gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972] gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972] Length = 632 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 173/558 (31%), Positives = 285/558 (51%), Gaps = 40/558 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + +++ P Sbjct: 20 ALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKL--DLNQYKPQ- 76 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 77 ---AIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRALKSGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I + L++ VLDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + +D RV++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 194 VKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV-- 367 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQL 373 Query: 368 -----VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 V E S AI + F + + EK V + + D +AA L+ Sbjct: 374 PHRDKVAEARLSQLAIELEAEKEHASLEKFAELV---EKLQVSLEI---DANTLAAILLK 427 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-----GSSW--FSLSVGS 475 + G + ++ +R + R + GG R + + + W + L VG Sbjct: 428 -RQQGKRPLFYVGEDPMIEAVERDKQRRRERRENGGDRRDGRREYTANTDWETYQLQVGR 486 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGI 531 Q + + ++ L G+ + SIGAI++ TFV++ SAD LR+ I Sbjct: 487 DQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKTMSADVTGKLRKL-----RI 541 Query: 532 QLKYLGGEKPDFRGYKSS 549 + K +G DF ++ S Sbjct: 542 RQKEVGAVVCDFDDFRES 559 >gi|71734200|ref|YP_275777.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554753|gb|AAZ33964.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 570 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 172/555 (30%), Positives = 286/555 (51%), Gaps = 37/555 (6%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 22 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 77 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P+ P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 78 ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 132 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R Sbjct: 133 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 192 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 193 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 252 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R + ++DGR + +A Sbjct: 253 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 312 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 313 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 373 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 429 Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462 +AA LR G L A E P+ + + R R+ G R Sbjct: 430 ALAAALLRKATNGQALTLAAIERERPL-VPNNAPRGDRPERSGSSDRGDRPERERRAPVP 488 Query: 463 -FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 +G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 489 LAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL 548 Query: 522 RRTVKLDK--GIQLK 534 +K + G QLK Sbjct: 549 LTKLKDTRVAGKQLK 563 >gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK] Length = 559 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 172/551 (31%), Positives = 278/551 (50%), Gaps = 38/551 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ +A+++ GY + + +Q A + L DV+ AQTG+GKT AF + + S + ++ Sbjct: 22 PAVL-KAVADVGYESPSPIQAATIPAILEGSDVVGLAQTGTGKTAAFAIPILSKIDTDSR 80 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AL +APTRELA+QV A+ V V GG S + L+ GA + Sbjct: 81 NTQ------ALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLKRGAQV 134 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DH+ L++SHL +VLDEADEML +GF +D+E IL +P+ +++ +FSA Sbjct: 135 VVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVALFSA 194 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ PAI + Y D V V + S+ + +I R LV+ + +A+ +L Sbjct: 195 TMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLETEQGDAM 254 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF T+ + + L F A++G++ Q R + ++DG + +ATDVAARG Sbjct: 255 IVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDILVATDVAARG 314 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREAN 364 +D+ + V++ ++ +PE+ +HR GRTGRAGR G + +FV P +++ ER+ R+ Sbjct: 315 LDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQ-- 372 Query: 365 VSVVWEPAPSVEAIRERDAQRI-------LQDP---LFLDSIQGDEKKMVDVLLAKHDPE 414 +V PSV+ + E+ + L P LF ++G E+ DV +A Sbjct: 373 -KLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRTLVEGYERDH-DVPMA----- 425 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474 IAA R G EE + R R + R R+ + + ++VG Sbjct: 426 DIAAALALQSRNG----EEFLMTEPPPEKRRERPE-RGDASPRKPRERRSDLATYRIAVG 480 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKG 530 + K ++ + G++R G I ++ D + VE+ A + L+ T + Sbjct: 481 KRHKVAPGAIVGAIANEGGLHRSDFGHITIKMDHSLVELPAKLPGKTLKALQNTKIQGQL 540 Query: 531 IQLKYLGGEKP 541 IQL+ G KP Sbjct: 541 IQLQPDRGAKP 551 >gi|331012221|gb|EGH92277.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 559 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 172/555 (30%), Positives = 286/555 (51%), Gaps = 37/555 (6%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 11 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P+ P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 67 ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R + ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKMTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462 +AA LR G L A E P+ + + R R+ G R Sbjct: 419 ALAAALLRKATNGQALTLAAIERERPL-VPNNAPRGDRPERSGSSDRGDRPERERRAPVP 477 Query: 463 -FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 +G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 478 LAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL 537 Query: 522 RRTVKLDK--GIQLK 534 +K + G QLK Sbjct: 538 LTKLKDTRVAGKQLK 552 >gi|160902412|ref|YP_001567993.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis SJ95] gi|160360056|gb|ABX31670.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95] Length = 530 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 158/523 (30%), Positives = 264/523 (50%), Gaps = 56/523 (10%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+ +GY T +QE ++ L K+ V+ AQTG+GKT AFG+ L L + A Sbjct: 16 AIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPLIERLDEK------A 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA+QV E++ L + + GGVS+ + R L+ +VVGTP Sbjct: 70 NDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQIRALKRRVDLVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L+I+ +K +V+DEADEMLD+GF +D+E IL + K++++LMFSAT+ Sbjct: 130 GRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQILMFSATMPQR 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-------YHGAK 245 I TLA+ + + V EN++ + + + N I + R ++G Sbjct: 190 IVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIELLSRLIDIDTNFYG-- 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ AL+G++SQ +R + + R ++ I+TDVAA Sbjct: 248 --LVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKILISTDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR------RAER 358 RGID+ +L+ VI+ L NPEN +HR GRT RAG +G ++ FV P +R ++ Sbjct: 306 RGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYRRFMFIKHSSKA 365 Query: 359 LFREANVSVVWEPAPS-VEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHD--P 413 + EA + + + VE I++ + + DP++ + + + +L + D P Sbjct: 366 IIEEAKIPQAKDIVNAKVEKIKDEIKSNLAKDIDPIY--------EILAETILEETDQEP 417 Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 +I A L+ G+ E + V + + D R F +++ Sbjct: 418 SQIIASILKYFYGGILKEENYNKIKEVKNSSKSK-DQRLF-----------------VAL 459 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 GS K + L + R +G+ + I I+V +FV V ++ Sbjct: 460 GSSSKMTPKKLAEFIERETGVTIKKIKDIQVMEKFSFVTVPSE 502 >gi|171463886|ref|YP_001797999.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193424|gb|ACB44385.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 479 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 141/398 (35%), Positives = 221/398 (55%), Gaps = 14/398 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-N 66 PQ I +A++E+GY T +Q + L D++ +AQTG+GKT AF L + +L + Sbjct: 40 PQ-IQKAVAEQGYNTPTPIQAQSIPHVLAGNDLMGAAQTGTGKTAAFVLPIIQKILRHAS 98 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + SPA P+ AL + PTRELAVQV T + AV GGV + + L+NG Sbjct: 99 NSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQVAILRNGV 158 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ T GRL DHI K N+S ++ +VLDEAD MLD+GF D++ I+ P +R+ L+F Sbjct: 159 EILIATLGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIISLIPAQRQTLLF 218 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL----RY 241 SAT SP I LA++Y + V V +A +N + +V+ +D+ AIV +L R Sbjct: 219 SATFSPEIKKLAQSYLRSPVTVEVARQNAAADTVKQVVHMVSSADKQRAIVKVLEARARA 278 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ I+F ++R ++ ++ L + A+ G+ Q ER+ L + G +AT Sbjct: 279 GLSRQCIIFTNSRLGCAKLSRTLERDGIKAGAIHGDKGQGERTLTLDAFKSGAIEALVAT 338 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+D+PD+ VI+ EL N E+ +HR GRTGRAG KG ++ ++ + +R + + + Sbjct: 339 DVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDLSEKRLLDDIEK 398 Query: 362 EANVSVVWEPAPSVEAIRER-------DAQRILQDPLF 392 + +P P +++ R A + DP F Sbjct: 399 LMKRKLDVKPLPEGASLQSRPSSSGYGSAPAKMSDPFF 436 >gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 539 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 162/513 (31%), Positives = 255/513 (49%), Gaps = 32/513 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL G+ T +Q+ + L KD++ AQTG+GKT AF + + + + + Sbjct: 23 IVQALVNMGFEEPTPIQQKTIPISLEGKDIIGQAQTGTGKTAAFAIPVLEKIDSRRNGVQ 82 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129 AL I PTRELA+QV E+ + + GG S+ R+ + L Q IV+ Sbjct: 83 ------ALIITPTRELAIQVAEEISNIGKYCRIRALPIYGGQSIDRQIKALKQQRVQIVI 136 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH+R L + + VVLDEADEMLD+GF +DIE IL+ +P R+ +FSATI Sbjct: 137 GTPGRLLDHLRRGTLRLEQVATVVLDEADEMLDMGFIEDIEAILNQTPTTRQTFLFSATI 196 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I L++ Y + ++ N I+ S + +A+ +L AI+ Sbjct: 197 PEEILRLSRKYLNSPEFITVSRNNLTVPLIEQVYYETRESTKLDALARLLDALDISLAII 256 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V L +Q L G+LSQ +R++ ++ + G+ +ATDVAARG+D Sbjct: 257 FCRTKRGVDELVASLQVRGYQAAGLHGDLSQYQRNHVMRQFKAGQVEFLVATDVAARGLD 316 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS-V 367 + ++ VI+ ++ +PE +HR GRTGRAG+ GM++ V P++ R RL + S V Sbjct: 317 IENVSHVINFDVPQDPEFYVHRIGRTGRAGKTGMAISLVSPRDF--RQLRLIEKITKSRV 374 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 E P + + ER + I + + DS + +VD L+ ++DP IAA L++ Sbjct: 375 KREHLPGLADLTERRKEMIKSQLIRVIEDSNLAYYRSVVDPLVDEYDPIDIAAAALKLG- 433 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRA--FKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 L +G D + +S + G G G +++G K Sbjct: 434 -----------YDLETGDDIEKTESSPAYYDTGAGP-----GMVRLFMTLGRKDNISPGE 477 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 L+ +L +GI +G +R+ TF EV + Sbjct: 478 LVRVLSEETGIPEHMVGDVRIYEKFTFTEVPEE 510 >gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM 21211] Length = 604 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 131/385 (34%), Positives = 210/385 (54%), Gaps = 6/385 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M+ + I + L+ERG + + +Q L ++ +D++ A+TG+GKT+AF + + Sbjct: 1 MQFTDLIAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVID 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L +R P AL +APTRELA QV E + + ++ GG + + + Sbjct: 61 KLEPSRER---GRLPRALILAPTRELAKQVAEEFKK--SAPELLTLTVYGGAAYGPQEKA 115 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G ++VGTPGR+ DHI L + ++ +LDEADEML +GF D IE IL ++P+ R Sbjct: 116 LYGGVDVIVGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETR 175 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239 + ++FSAT+ +T + Y KD + V++ E+R + + + V + R + + L Sbjct: 176 QTMLFSATLPAGVTRIGNKYLKDPLVVDLVGESRMQAAQTVQHLKVKVGRTRTRVLADFL 235 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + AIVF T+ V L + AL G+L+Q +R AL R GR RV + Sbjct: 236 TIYNPERAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVRVLV 295 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARG+D+P+++LV+ L +PE+ +HRSGRTGRAGR G ++ + + R L Sbjct: 296 ATDVAARGLDIPEIDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGRELRNL 355 Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384 + V P+ + +RE A+ Sbjct: 356 EYQTGVKFEERSIPTPKEVREASAR 380 >gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. ATCC 3502] gi|153932415|ref|YP_001385046.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str. ATCC 19397] gi|153936759|ref|YP_001388516.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str. Hall] gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein) [Clostridium botulinum A str. ATCC 3502] gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. ATCC 19397] gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. Hall] Length = 524 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 158/522 (30%), Positives = 270/522 (51%), Gaps = 48/522 (9%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ G+ +++QE + L DV+ AQTG+GKT+AFG + S L + Sbjct: 10 NLNEDVLKAIQYMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + AL + PTRELA+Q+ EL+ L Y+KT V+ GG S+ R+ +D+++ Sbjct: 70 EKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGR+ DHI + L + + ++LDEADEML++GF +DIE I++S+ ++++ + Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I LA NY +KD + I ++ I V D+ AI I+ Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSE 243 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++AI+FC T+ V + + + V + G++SQ +R N L+ + +ATD Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 VAARGID+ ++ VI+ ++ + E+ +HR GRTGRA ++G + V P+ + R+ ER+ Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415 + + + P++E I E+ +L D I+ ++ + MV L D + Sbjct: 364 IKS---KITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSQ 418 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD--SRAFKVGGGSRDNFKGSSWFSLSV 473 ++A + + L + E +S D+ + R F LSV Sbjct: 419 VSAALMEM----LFSKE----MSFDYTNDKLEAEVPVRLF-----------------LSV 453 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 G K + L+ + + + IG I + TF++VS+ Sbjct: 454 GRKDSINVKSLLTFIQDEASVKNHEIGDIDILDKFTFMDVSS 495 >gi|114046738|ref|YP_737288.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113888180|gb|ABI42231.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 409 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 124/337 (36%), Positives = 192/337 (56%), Gaps = 2/337 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ T +Q + L ++DV+ AQTG+GKT AF L + LL +N+ Sbjct: 16 LAELGYLQPTPIQVEAIPAILAKQDVMAGAQTGTGKTAAFALPILQQLLLDNESQDAPKD 75 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL + PTRELAVQV + T + V + GGVS+ ++ + + G +++ TPGR Sbjct: 76 IRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAEFKAGVDVLIATPGR 135 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L DH+R LN+ +L +V DEAD MLD+GF D+I+ +L P +R+ L+FSAT+ +I Sbjct: 136 LLDHLRQGVLNLKYLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLLFSATLDDSIF 195 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253 +KN +D + +A N + ++ R + SDR V +++R + ++F T Sbjct: 196 GFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAID-SDRKTEFVSHLVRSKNWQQVLIFSRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + T L + A G+LSQ R L+ + G +V +ATDVAARG+D+ DL Sbjct: 255 KQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLVATDVAARGLDIADL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 315 QYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 351 >gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010] gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010] Length = 460 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 129/341 (37%), Positives = 200/341 (58%), Gaps = 10/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL GY ++T++Q L L+ D++ A+TGSGKT AFG+ L L N RF A Sbjct: 17 DALDSLGYESMTAIQAQSLPEILKGNDLIAQAKTGSGKTAAFGIGLLQKL---NPRFFGA 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A L + PTRELA QVG+E+ L + +V +C GG + + L++GAHIVVG Sbjct: 74 QA---LVLCPTRELAEQVGKEIRKLARFMPNIKLVMLC-GGKPIGPQIGSLEHGAHIVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R L + L +VLDEAD MLD+GF D ++ I+ +PK R+ L+FSAT Sbjct: 130 TPGRVQDHLRKNTLKLDGLTTLVLDEADRMLDMGFADAMQAIIGQTPKNRQTLLFSATYP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +++ Q++ V V + +E+ + I V+ DR+ A++++ ++ + +VF Sbjct: 190 DTIQHMSRQIQRNPVTVTVEAEHNKEV-IQQVFYEVSKHDRNTALLSLFAHYQPETCVVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ L +A+ G+L Q++R L + V +ATDVAARG+D+ Sbjct: 249 CHTKKQCDDVADFLNNEQIDALAIHGDLDQRDRDQVLVRFANNSCPVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 L++VI+ EL +PE +HR GRTGRAG+ G+++ ++ N Sbjct: 309 KALQMVINYELPRDPEVYVHRIGRTGRAGQTGLAMSIVTPN 349 >gi|213968691|ref|ZP_03396833.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. tomato T1] gi|213926624|gb|EEB60177.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. tomato T1] Length = 573 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 172/558 (30%), Positives = 287/558 (51%), Gaps = 40/558 (7%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 22 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 77 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 78 ----RIDPTKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 132 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R Sbjct: 133 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 192 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 193 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 252 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R ++ ++DGR + +A Sbjct: 253 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 312 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 313 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--PLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 373 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGD---LLDRLTADIGCSPR 429 Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462 +AA LR G L A E P+ + + R R+ G R + Sbjct: 430 ALAAALLRKATNGQALTLAAIERDRPL-VPNNAPRGDRPERSGSSDRGDRGDRPERERRA 488 Query: 463 ----FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 +G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG+ Sbjct: 489 PVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGL 548 Query: 519 DLLRRTVKLDK--GIQLK 534 + L +K + G QLK Sbjct: 549 ERLLTKLKDTRVAGKQLK 566 >gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] Length = 507 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 134/344 (38%), Positives = 200/344 (58%), Gaps = 5/344 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66 P+++ L E GY T +Q + + KD++ AQTG+GKT AF L + +L + Sbjct: 32 PELLRAVLDE-GYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPILQRILPFAS 90 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNG 124 SPA P+ AL +APTRELA+QV ++ Y+K + A+C GGV + + +L+ G Sbjct: 91 SSPSPAKHPVRALILAPTRELAMQVFESVKT-YSKHTPIRAMCAYGGVDIRPQIAELKKG 149 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I+V TPGRL DH+ K ++ + ++A+VLDEAD MLD+GF D+ IL+ P +R+ L+ Sbjct: 150 VEILVATPGRLLDHVENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLPAQRQSLL 209 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT S I LA K + + +A N+ I +R V+ + + +L+ Sbjct: 210 FSATFSEEIKKLADTMLKSPILIEVARRNQVSDTITHRVHPVSEYGKRGLLTKLLKSGEI 269 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVFC T+ SR T+ L + A+ G+ SQ ER AL+ + G IATDVA Sbjct: 270 RQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGETDALIATDVA 329 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARG+D+ DL VI+ EL PE+ +HR GRTGRAG+KG ++ ++ Sbjct: 330 ARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKKGNAISLV 373 >gi|307326471|ref|ZP_07605666.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger Tu 4113] gi|306887879|gb|EFN18870.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger Tu 4113] Length = 559 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 170/541 (31%), Positives = 270/541 (49%), Gaps = 22/541 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY T +Q + P L +D+L A TG+GKT AF L + + + + Sbjct: 24 ALAGLGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALPVLQRISQDGG----GA 79 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA+Q + G V GG + R+ R L+ G +VV TPG Sbjct: 80 EPSALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQLRALERGVDVVVATPG 139 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R DHI L + L+ +VLDEADEMLD+GF +DI+ IL+ +P R+ ++FSAT+ I Sbjct: 140 RALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILEGTPADRQTVLFSATMPARI 199 Query: 194 TTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +A+ + + VR+ I E + + A +VA + + A+ +L + IVF Sbjct: 200 DAMARRHLRGPVRIQIEREKPAPGETPKVRQSAYVVARAQKPAALGRVLDVESPEATIVF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TR V + T+ L ++ AL G + Q++R + +R G A + +ATDVAARG+D+ Sbjct: 260 CRTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVRGGTADLLVATDVAARGLDI 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L V++ ++ S PE+ +HR GR GRAGR+G+++ + R + + R + E Sbjct: 320 EQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKAIERTTRRQIRVE 379 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRI-HR 425 P+V +R R + L +SI D+ + +V+ L + D +A +++ H Sbjct: 380 KVPTVADLRARRLE--LTRAALQESIVEDDLDRFRVVVETLTDEFDVMDVALAAVKLAHE 437 Query: 426 AGLCA--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 AG A EEI V+ GR + G+R +G + + G + Sbjct: 438 AGGAAVDEEEIPEVAPRGGRGDREGRGAPGRGPRGTRAPAEGMTRLFIGAGRSAGIRPQD 497 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDF 543 L+ + S ++ + IG+I + + VEV A VD + R + +G LK G KP Sbjct: 498 LVGAIAGESRLSGRDIGSIEIADRFSLVEVPASAVDEVIRAL---RGTTLK---GRKPIV 551 Query: 544 R 544 R Sbjct: 552 R 552 >gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107] gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107] Length = 469 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 147/405 (36%), Positives = 225/405 (55%), Gaps = 23/405 (5%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F +P + + + L+ Y ++T +Q L L +D++ A+TGSGKT AFG+ L Sbjct: 17 FSTLPLSRAMLDNLASLEYTSMTPIQAESLPWVLAGRDLIAQAKTGSGKTAAFGIGLLEK 76 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERR 119 L + D F A AL + PTRELA QV +EL L + ++ +C GGV++ + Sbjct: 77 L--QVDSF----AVQALVLCPTRELADQVAKELRRLARFTHNIKILTLC-GGVAIGPQLG 129 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ GAHIVVGTPGR+ DH+R L++ L+ +VLDEAD MLD+GF DDI ++ S+ + Sbjct: 130 SLERGAHIVVGTPGRIVDHLRKGSLHLDRLQQLVLDEADRMLDMGFADDINTVIASANSE 189 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT I ++ YQ+D VRV + S + + L R +A++N+L Sbjct: 190 RQTLLFSATYPANIQQMSARYQRDPVRVTVESLHTSQQIRQHFYELAEGDSRTSAVINLL 249 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + ++FC+T+A L +AL G++ Q+ER L + V I Sbjct: 250 AHFQPASTLIFCNTKAECEELADGLQAKKVAALALHGDMEQKERDRVLVRFANKSCAVLI 309 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR--RA 356 ATDVAARGID+ DL+ VI+ EL+ + E +HR GRTGRAG +G+++ V P+ + R R Sbjct: 310 ATDVAARGIDIKDLDAVINYELARDSEVHVHRIGRTGRAGAEGLALSLVAPREIVRVNRL 369 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 E R+ S+EA+ + D + Q + +I G +K Sbjct: 370 EDYLRQ---------TISLEAVPDSDTNSLPQPVMATLNIDGGKK 405 >gi|294828452|ref|NP_714230.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str. 56601] gi|293386306|gb|AAN51248.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str. 56601] Length = 516 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 205/376 (54%), Gaps = 7/376 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A+ E G+ + +Q + L+ KD++ AQTG+GKT AF + L E Sbjct: 10 NLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVE 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 + AL + PTREL +QV + L G V I GG + R+ R L+ Sbjct: 70 SKHLQ------ALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRKN 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IV+ TPGR+ DH+R +++ +K VVLDEADEMLD+GFR+D+EFIL +P R+ +M Sbjct: 124 PQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQTIM 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ + TL K +Q +++ + I+ + + + A+ ++ Y Sbjct: 184 FSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K A+VFC+T+A V ++L + AL G+L+Q++R + R G + +ATDVA Sbjct: 244 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEILVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 RGID+ ++E V + +L + E+ +HR GRTGRAG+KG++ I +++ R Sbjct: 304 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 363 Query: 365 VSVVWEPAPSVEAIRE 380 + + P+++ + E Sbjct: 364 IKIEAGKIPTLDDLEE 379 >gi|146305516|ref|YP_001185981.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp] gi|145573717|gb|ABP83249.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp] Length = 458 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 202/366 (55%), Gaps = 12/366 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q A L L+ +D++ A+TGSGKT AFG+ L L N R+ A Sbjct: 19 LAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHPL---NPRYFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A + V GGV + L++GAH++VGTPG Sbjct: 76 ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEHGAHVIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + L +VLDEAD MLD+GF D I I++ +P +R+ L+FSAT I Sbjct: 133 RIQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARRQTLLFSATYPAGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA + + RV + + QH D I+ R +A R A+ +LR+ + + FC Sbjct: 193 EQLAARFLRTPERVEVEA---QHDDGQIEQRFYEIAPGQRMEAVSTLLRHFRKQPVVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR L AL G+L Q++R L + + V +ATDVAARG+D+ Sbjct: 250 ATRQQCDELAAQLEAEKISAAALHGDLEQRDRDQILALFANRSLSVLVATDVAARGLDIA 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 LE+VI+ ELS + E +HR GR+GRAG KG+++ ++ RA+ + + W P Sbjct: 310 GLEMVINVELSRDAEVHIHRIGRSGRAGEKGLALSLVAPAEAGRAQAIETLQGRELAWYP 369 Query: 372 APSVEA 377 P+ +A Sbjct: 370 LPAAKA 375 >gi|332827587|gb|EGK00333.1| hypothetical protein HMPREF9455_03472 [Dysgonomonas gadei ATCC BAA-286] Length = 611 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 171/534 (32%), Positives = 266/534 (49%), Gaps = 32/534 (5%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57 MK FE + I +A+ E GY N VQE ++ L E D++ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETSDIIALAQTGTGKTAAFGLP 60 Query: 58 LASTL-LAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 + + + EN P AL + PTREL +Q+ +L ++ + V GG S+ Sbjct: 61 VLQKIEVKEN-------VPQALILCPTRELCLQIAGDLADYSKYIDNLRVLPVYGGSSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + + L+ G I+V TPGRL D I K +++ ++K VVLDEADEML++GF + I+ IL Sbjct: 114 SQIKSLKRGVQIIVATPGRLIDLINRKTVDLKNIKYVVLDEADEMLNMGFTESIDEILSK 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P +R ML+FSAT+ I + K Y + + I +N +++ + +V D+ A+ Sbjct: 174 VPDERVMLLFSATMPKEIAKITKKYMQSPKEITIGRKNEGSNNVKHVYYMVHAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I Y+ I+FC TR L + + +L G+LSQ +R +Q R Sbjct: 234 KRIADYYPNIYGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIHNI 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ L VI+ L + E+ HRSGRTGRAG+ G S+ ++ + + Sbjct: 294 QLLVATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSISIVHVKEKGK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-------- 407 + + N PS EAI E+ ++ ++ ++ +E ++ ++L Sbjct: 354 IREIEKIINKKFEQGVIPSGEAICEKQLFSLVDR---IEKVKVNEDEISNLLPSVYRKLD 410 Query: 408 -LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRD-----RFRDDSRAFKVGGGS 459 L K D K +A F R+ A E TP S D R +D R+ + GGS Sbjct: 411 WLEKEDIIKRVVALEFNRLIDYYRDADEIETPSDRFSKGDDKSYPRRKDRERSDRSSGGS 470 Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 R KG S +++G LM L + +IG I + + +F EV Sbjct: 471 RGAEKGYSRLFINIGRTDSVNPATLMG-LVNDFVPEKVNIGRIDIMQNFSFFEV 523 >gi|190573462|ref|YP_001971307.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a] gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a] Length = 654 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 135/374 (36%), Positives = 212/374 (56%), Gaps = 13/374 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A++ GY + +Q A + L +DVL AQTG+GKT AF L + S + + + Sbjct: 20 VMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQIK-- 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL +APTRELA+QV + +K G V GG ++ L+ G HIVV Sbjct: 78 ----PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGVHIVV 133 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P++R++ +FSAT+ Sbjct: 134 GTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATM 193 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I +A+ Y +D V V IA++ ++I R V+ + +A+ IL I+ Sbjct: 194 PPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMII 253 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+A L A++G++ Q +R + M+++G+ + +ATDVAARG+D Sbjct: 254 FARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGLD 313 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366 + + V++ ++ + E+ +HR GRTGRAGR G ++ F P + M R+ ER R+ Sbjct: 314 VERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQPIEE 373 Query: 367 VVWEPAPSVEAIRE 380 + PSVEA+ + Sbjct: 374 MQL---PSVEAVND 384 >gi|28868981|ref|NP_791600.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. tomato str. DC3000] gi|301381308|ref|ZP_07229726.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. tomato Max13] gi|302061477|ref|ZP_07253018.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. tomato K40] gi|302130057|ref|ZP_07256047.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852221|gb|AAO55295.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. tomato str. DC3000] gi|330877010|gb|EGH11159.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330968143|gb|EGH68403.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016872|gb|EGH96928.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 562 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 172/558 (30%), Positives = 287/558 (51%), Gaps = 40/558 (7%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 11 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66 Query: 64 AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120 R P P AL +APTRELA+QV E YAK GV V GG + + + Sbjct: 67 ----RIDPTKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ + L ++ AL+G+++Q +R ++ ++DGR + +A Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--PLFLD--SIQGDEKKMVDVLLAK--HDPE 414 R V P +A+ + +++ PL D S GD ++D L A P Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGD---LLDRLTADIGCSPR 418 Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462 +AA LR G L A E P+ + + R R+ G R + Sbjct: 419 ALAAALLRKATNGQALTLAAIERDRPL-VPNNAPRGDRPERSGSSDRGDRGDRPERERRA 477 Query: 463 ----FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 +G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG+ Sbjct: 478 PVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGL 537 Query: 519 DLLRRTVKLDK--GIQLK 534 + L +K + G QLK Sbjct: 538 ERLLTKLKDTRVAGKQLK 555 >gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14] gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14] Length = 648 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 211/372 (56%), Gaps = 13/372 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A++ GY + +Q A + L +DVL AQTG+GKT AF L + S + + + Sbjct: 20 VMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQIK-- 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL +APTRELA+QV + +K G V GG ++ L+ G HIVV Sbjct: 78 ----PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGVHIVV 133 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P++R++ +FSAT+ Sbjct: 134 GTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATM 193 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I +A+ Y +D V V IA++ ++I R V+ + +A+ IL I+ Sbjct: 194 PPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMII 253 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+A L A++G++ Q +R + M+++G+ + +ATDVAARG+D Sbjct: 254 FARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGLD 313 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366 + + V++ ++ + E+ +HR GRTGRAGR G ++ F P + M R+ ER R+ Sbjct: 314 VERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQPIEE 373 Query: 367 VVWEPAPSVEAI 378 + PSVEA+ Sbjct: 374 MQL---PSVEAV 382 >gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens] Length = 619 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 214/366 (58%), Gaps = 12/366 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++RG +L +Q A+L P ++ +D++ A+TG+GKT+AFG+ + ++ N + Sbjct: 15 IVEALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIRHIVDGNAENA 74 Query: 71 P--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P +P AL +APTRELA QV RE ++ VC+ GGV + ++R L+ G I Sbjct: 75 PRQGRSPRALVLAPTRELAKQVEREF---MESAPMLSTVCVYGGVPISMQQRQLERGVDI 131 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VGTPGR+ D I L + + +VLDEAD+ML +GF +D+E IL PK+R+ ++FSA Sbjct: 132 AVGTPGRIIDLIDRGSLKLKDVHFLVLDEADQMLAVGFEEDVERILQQLPKQRQSMLFSA 191 Query: 188 TISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-A 244 T+ + L++ Y + +++ S+ + I A+ + S + + + +++ HG Sbjct: 192 TMPKWVKELSRKYLNKPLTIDLVGDSDEKLADGIKNLAIQLPASAKRSILSDLITVHGKG 251 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVF T+ + +L AL G++SQ +R L RDG+ V +ATDVA Sbjct: 252 GKTIVFTQTKRDADDVAMAMG-NLVSCGALHGDISQVQREKTLSAFRDGKIAVLVATDVA 310 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+P+++LVIH E+ ++ E +HR+GRTGRAGR G ++ + + Q R R E N Sbjct: 311 ARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGRSGTNILMF-TSQQVRTMRTI-ENN 368 Query: 365 VSVVWE 370 V ++ Sbjct: 369 VKCKFQ 374 >gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] Length = 502 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/338 (37%), Positives = 197/338 (58%), Gaps = 7/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ G+ T +Q A + L KD++ AQTG+GKT AFG+ L + END Sbjct: 16 AVTQMGFEEATPIQAATIPTALEGKDIIGQAQTGTGKTGAFGVPLIDRINIENDHVQ--- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV L GV V GG + ++ RDL+N H+VV TPG Sbjct: 73 ---ALILAPTRELANQVAESLFKFGKYKGVRTVVVYGGQDMRKQIRDLKNKPHVVVATPG 129 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+R K + + ++ VVLDEADEML++GF +DIE IL P +R+ L+FSAT+ I Sbjct: 130 RLMDHMRRKTIRLGQVETVVLDEADEMLNMGFIEDIETILSEVPNERQTLLFSATMPKRI 189 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + + S+ +I+ + V V + + + + H + AIVF T Sbjct: 190 EKLAQTFMSEPKLIAVKSKEVTMENIEQQYVEVHERQKFDTLCRFIDIHTPELAIVFGRT 249 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V ++ L + ++ + G+L+Q +R + L+ ++G V +ATDVAARG+D+ + Sbjct: 250 KRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGLVDVLVATDVAARGLDITGV 309 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 V + +L +PE+ +HR GRTGRAG+ G+++ F P+ Sbjct: 310 THVYNFDLPQDPESYVHRIGRTGRAGKSGLALTFATPR 347 >gi|218777997|ref|YP_002429315.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759381|gb|ACL01847.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum alkenivorans AK-01] Length = 567 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 177/574 (30%), Positives = 283/574 (49%), Gaps = 54/574 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + A+ G+ T +QE + P L E+D + AQTG+GKT A+GL L ++ R Sbjct: 12 LARAVESLGFEKPTPIQEKAI-PYLIEGERDFVGLAQTGTGKTGAYGLPLIQSIDLSIPR 70 Query: 69 FSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P A+ I PTREL +Q+ +L ++ + VA GG + ++ R ++ GA I Sbjct: 71 ------PQAIVICPTRELCLQIAGDLRDFAKYMEDIRVAAVYGGADIVKQIRTVKGGAQI 124 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 + TPGRL D I K + H+ VVLDEADEML++GF++DI IL S P +RR +FSA Sbjct: 125 IAATPGRLLDLINRKAIKPGHVTRVVLDEADEMLNMGFQEDINAILSSLPDERRTWLFSA 184 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ + +A YQ + V V + N+ DI + ++ +R A+ IL Y Sbjct: 185 TMPKGVAAIAAKYQTNPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPDMFG 244 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VFC TR + L + AL G+LSQ +R + R +V ATDVAARG Sbjct: 245 LVFCRTRKDTQEIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVAARG 304 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLF 360 +D+ D+ VIH L +PE HRSGRT RAG++G S+ +I ++++RR + F Sbjct: 305 LDVDDISHVIHYVLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLKDLERRGKFSF 364 Query: 361 R-----------EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409 + + V+ + E SV ++RE D + D L++ +G ++ + Sbjct: 365 QLDSLPQGRDICQKQVAGLAEKLASV-SVRENDIAEYMPD--ILEAFEGLSREEI----- 416 Query: 410 KHDPEKIAAGFLRI----HRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGGGSRD 461 + ++ F R+ AG + V +G R++ R K G +D Sbjct: 417 --IQKAVSTEFNRLLDYYRNAGDINAKPREKVKGQAGAKFTREKIVGKGRHGK--GPKKD 472 Query: 462 NFKG--SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 KG + F ++ G K ++ ++C +SGI +SIG I + + +F EV Sbjct: 473 RLKGRKTQRFFINRGRLDKVNEGAIVRLVCENSGIKSRSIGQIDLNREFSFFEVEKSLAP 532 Query: 520 LLRRTVK---LD-KGIQLKYLGGEKPDFRGYKSS 549 + R ++ LD K +Q++ +KP +G K + Sbjct: 533 RVLRGLENATLDGKALQVRAADKQKPAEKGRKKA 566 >gi|302388261|ref|YP_003824083.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1] gi|302198889|gb|ADL06460.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum WM1] Length = 572 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 165/558 (29%), Positives = 280/558 (50%), Gaps = 43/558 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ G+ + +Q + +D++ AQTG+GKT AFG+ L + P Sbjct: 31 AVADMGFEEASPIQAQAIPVQAEGRDIIGQAQTGTGKTAAFGIPLLQ-------KIDPKV 83 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L A+A+ PTRELA+QV E+ L GV V GG + ++ R L++G I++GT Sbjct: 84 KKLQAVALCPTRELAIQVADEIRRLAKYMHGVKVVPIYGGQDIVKQIRSLKDGTQIIIGT 143 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R K + H+ V++DEADEML++GF +D+E IL P++R+ +MFSAT+ P Sbjct: 144 PGRVMDHMRRKTVKFDHVHTVIMDEADEMLNMGFLEDMETILSQLPEERQTVMFSATMPP 203 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ +Q+D V V + + + V + + +L + K ++ FC Sbjct: 204 AIMEIARKFQQDPVTVKVVKKELTVPKVTQYYYEVKPKSKVEVMCRLLDMYAPKLSVAFC 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V + L + L G+L Q +R + R+G+ + +ATDVAARGID+ Sbjct: 264 NTKKQVDELVQALQGRGYFAEGLHGDLKQIQRDRVMGSFRNGKTEILVATDVAARGIDVD 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 D+E V + +L + E +HR GRTGRAGR+G++ FV+ + + + + + R +V + Sbjct: 324 DVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRD-IQRYCKTKIVPQ 382 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDVLLAKHDPE-----KIAAGFLRIH 424 PS+ + +IL+ D+I D K V+++ K E +AA L++ Sbjct: 383 AIPSLNDVTAIKVDKILE--TVADTIGDTDLSKTVNIIEKKLLEEDYTSLDLAAALLKMM 440 Query: 425 RAGLCAPEEIT----PVSLVSGRDRFRDDSRAFKVG-------------GGSRDNFKGSS 467 E+I P SL D F + SRD+ + Sbjct: 441 MGE--ENEDIIDTREPRSL-DELDNFYGGGSRGRSSGRNGSGSSRGGRYDSSRDDM---A 494 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527 +++G Q + ++ + SG+ + +G+I + TFVEV + D + + +K Sbjct: 495 RLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPRENADAVLQAMK- 553 Query: 528 DKGIQLKYLGGEKPDFRG 545 D I+ K + EK + +G Sbjct: 554 DVKIKGKNIHMEKANGKG 571 >gi|269119742|ref|YP_003307919.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386] gi|268613620|gb|ACZ07988.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC 33386] Length = 530 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 152/510 (29%), Positives = 261/510 (51%), Gaps = 33/510 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLV-SAQTGSGKTVAFGLALASTLLAENDRFSP 71 +AL ++G+ + +++Q ++ L+E+ L+ AQTG+GKT AF + + TL + Sbjct: 17 KALDKKGFTSPSAIQTLVIPELLKERTNLIGQAQTGTGKTAAFAIPILETLDCD------ 70 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + A+ +APTRELA QV E+ L K + V GG S+ ++ + ++ G ++VGT Sbjct: 71 -GSVRAIVLAPTRELANQVADEMYSLRGKKEIKVLPVYGGQSIDQQIKKIKKGIDVIVGT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D + K + +++L+ VLDEADEML++GF +DIE IL+ + + ++ML FSATI Sbjct: 130 PGRILDLMNRKVIKLNNLEYFVLDEADEMLNMGFIEDIELILERTNEDKKMLFFSATIPD 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 +I +AK + KD + + ++ + + V D+ A+ +L Y IVFC Sbjct: 190 SIMKIAKKFMKDYKLLKVKTKELTTNLTEQIYFEVTEGDKFEALCRVLDYVHDFYGIVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T++ V + L + A+ G+++Q R L+ + R + +ATDVAARGID+ Sbjct: 250 RTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINILVATDVAARGIDVN 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DL VI+ + PE+ +HR GRTGRAG+KG+++ FV P+ + + ++ R + E Sbjct: 310 DLTHVINYSIPQEPESYVHRIGRTGRAGKKGIAITFVTPKEASKIS-KIQRLTKTDIKKE 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPEKIAAGFLRIHR 425 P +E + + + ++ I+ +E M LL DPE + A LR Sbjct: 369 KIPKIEEVISVKKENLYA---CVEEIEKEEDFGYYTGMAKELLGDKDPEVVLASLLRHMY 425 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG--SSWFSLSVGSKQKAEARW 483 PE +S V K G G N G + +++G K Sbjct: 426 DDEFLPESYNEISEV-------------KTGRGLNANNAGDDKTRLFIALGKKDGYTPGK 472 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 L+ +L + + + + I++ + +F+ V Sbjct: 473 LLDLLNKKAKTPGRKVRDIKIMDNFSFITV 502 >gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae] gi|187031542|emb|CAP29606.1| hypothetical protein CBG_10097 [Caenorhabditis briggsae AF16] Length = 486 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 120/345 (34%), Positives = 203/345 (58%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + +A G+ + +Q+A L L KDV+ A+TGSGKT AF + + +LL Sbjct: 51 VSQPLCDACLRLGWTKPSKIQQAALPHALEGKDVIGLAETGSGKTGAFAIPVLQSLLDHP 110 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F L + PTRELA Q+G++ E L + G++VAV +GGV + + L H Sbjct: 111 QAF------FCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPH 164 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+ KG N+ LK +++DEAD +L++ F +++ IL PK+RR +F Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRTYLF 224 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ ++ L + +D RV+I++ + ++ + + ++ +V +L H Sbjct: 225 SATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFIPNKYKETYLVYLLNEHAGN 284 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AIVFC+T A+ + +L + Q V L G++SQ++R +L + + + TDVAA Sbjct: 285 SAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAA 344 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++VI+ ++ S ++ +HR GRT RAGR G+++ V+ Q Sbjct: 345 RGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQ 389 >gi|81429227|ref|YP_396228.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp. sakei 23K] Length = 530 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 8/355 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + + I +A+S G+ T +Q + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSELGLSEPIMKAISRAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L +N AL I+PTRELA+Q EL L V V GG + R+ R Sbjct: 61 QNLDLDNPDIQ------ALIISPTRELAIQTQEELYRLGRDRKAKVQVVYGGADIRRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ I+VGTPGRL DHI + + + H+K +VLDEADEMLD+GF DDIE I+ P+K Sbjct: 115 SLKDHPQILVGTPGRLLDHINRRTVKLDHVKTLVLDEADEMLDMGFVDDIESIIKQVPEK 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + K++ + + + S+ ID V ++ + + + Sbjct: 175 RQTLLFSATLPAPIMKIGKSFMTNPEMIKVKSKELTADLIDQYYVRAKDFEKFDIMTRLF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++F T+ V T+ L + + G+LSQQ+R + L+ + GR V + Sbjct: 235 DVQSPELTLIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDVLV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 ATDVAARG+D+ + V + ++ +P++ +HR GRTGRAG+ G+SV FV P M+ Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEME 349 >gi|227548399|ref|ZP_03978448.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 683 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 138/406 (33%), Positives = 225/406 (55%), Gaps = 14/406 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + A+ G+ + +Q + + +DV+ AQTG+GKT AF L + S + + Sbjct: 110 DLPDSVIAAVKMVGFEQPSPIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPVLSQIDPQ 169 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 P AL +APTRELA+QV + G + + I GG + + L+ G Sbjct: 170 ------LRHPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQAYGIQLSGLRRG 223 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A I+VGTPGR+ DH+ L+IS+L+ +VLDEADEML++GF++D+E IL+ +P +++ + Sbjct: 224 AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPNTKQVAL 283 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I ++K Y D V + SE R +++I R + A ++ +AI IL Sbjct: 284 FSATMPNGIRKISKQYLNDPAEVTVKSETRTNTNITQRYLFTAHRNKLDAITRILEVTEF 343 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T+ + L F A++G+++QQ+R + +RDGR + +ATDVA Sbjct: 344 EAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVATDVA 403 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ + V + ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 404 ARGLDVERISHVFNYDIPNDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTN 463 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLA 409 ++ P+V+ + E R L+ F+DSI E K DV A Sbjct: 464 ATIEEMELPTVDEVNE---SRKLK---FMDSITASLESKDQDVFKA 503 >gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521] gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521] gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E BL5262] Length = 524 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 159/515 (30%), Positives = 262/515 (50%), Gaps = 41/515 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + + I A+S+ G+ + +QE + L D++ AQTG+GKT A+ L + + Sbjct: 11 LKESIVRAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPILT------ 64 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + S AL +APTRELAVQV E+ L + GG S+ R+ R L+ G Sbjct: 65 -KMSTNKGIKALILAPTRELAVQVKDEMNRLSKYEKAEILAVYGGDSIDRQIRALRKGVD 123 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ D I+ K L++ ++ +VLDEADEML++GF DDIE IL +P++R+ L+FS Sbjct: 124 VVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLNMGFIDDIESILSHTPEERQTLLFS 183 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT+ I LAK Y K DA V++ + S I+ ++ R A+ +L Sbjct: 184 ATMPDPIAKLAKRYMKPDAKLVSVKKSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNPS 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AI+FC T+ V + L + V + G+++Q R L ++G + IATDVAA Sbjct: 244 SAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLSKFKEGTLNLLIATDVAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFRE 362 RGID+ + V + +L + E+ +HR GRTGRA R+G + V P++ M ++ +++ + Sbjct: 304 RGIDVDGVTHVFNYDLPQDVESYVHRIGRTGRANREGTAYSLVTPKDFSMLKQIQKVTKS 363 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVD---VLLAKHDPEKIAA 418 A + +P P+ E I+ + I+++ ++I GD K + L+ +DP + A Sbjct: 364 A---ITQKPVPTAEEIKNKKFNDIIKE--VTETITSGDLAKFMPNAIELVENNDPLSVVA 418 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 ++I E + S ++D R F SVG + Sbjct: 419 ALMKIKYDN----ESVFDYSSDKLEAPKKEDIRLF-----------------FSVGKRDG 457 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + L+ + + +N +IG I + + +FV V Sbjct: 458 LTPKVLINYIKDRTRVNASTIGQIDLMENFSFVSV 492 >gi|33152628|ref|NP_873981.1| ATP-dependent RNA helicase [Haemophilus ducreyi 35000HP] gi|33148852|gb|AAP96370.1| cold-shock DEAD box protein-A [Haemophilus ducreyi 35000HP] Length = 606 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 162/516 (31%), Positives = 266/516 (51%), Gaps = 17/516 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +A+++ +V + +Q+ + L DVL AQTGSGKT AF L L + + N Sbjct: 13 LPQSILDAVNDMSFVTPSPIQQECIPHLLAGSDVLGMAQTGSGKTAAFSLPLLAQI-DPN 71 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 R P L +APTRELA+QV E G+ V GG + R L+ G+ Sbjct: 72 QRH-----PQMLVMAPTRELAIQVADACEQFTKNMKGIRVVTVYGGQRYDIQLRALKQGS 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR LN+S LK++VLDEADEML +GF DD+E ++ P+K + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLNLSTLKSIVLDEADEMLRMGFIDDVETVMAELPEKHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + + D V I + R DI LV ++ A++ L Sbjct: 187 SATMPEPIRRITRRFMSDPKEVKIQATQRSAPDITQSYWLVNGFRKNEALLRFLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ T++ + ++ AL+G+++QQ R L ++ GR + +ATDVAA Sbjct: 247 AAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362 RG+D+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E+L ++ Sbjct: 307 RGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEQLMKK 366 Query: 363 ANVSVVWEPAPSV--EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 + V P V E RE+ +I + L ++ + + ++ A D E++AA Sbjct: 367 P-IDPVAIPNHQVLMEKRREKFKAKISKQ-LEHHDLEKYRELLENLFTADQDHEELAAAM 424 Query: 421 LRIH-RAGLCAPEEITPVSLVS--GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 + + + L P + +L S GR + + +N + + +G + Sbjct: 425 MMLQEKQKLILPPDPEVRNLRSERGRRDRNERNDRRNGREHRENNGVAMDLYRIELGRED 484 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 E R ++ + IN + IG I++ + +E+ Sbjct: 485 GVEVRHIVGAIANEGDINSRYIGHIKLHDRYSTIEL 520 >gi|325964224|ref|YP_004242130.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans Sphe3] gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans Sphe3] Length = 710 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 168/545 (30%), Positives = 279/545 (51%), Gaps = 27/545 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY + +Q A + L +DV+ AQTG+GKT AF + S L +D P+ Sbjct: 81 ALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSR 140 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV E YAK V GG + + L+ GA +VVGT Sbjct: 141 KTQALVLAPTRELALQVA-EAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGT 199 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI L++S L+ +VLDEADEML +GF +D+E I +P R++ +FSAT+ Sbjct: 200 PGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDRQVALFSATMPS 259 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++K Y + +++ S+ ++ R + V + +A+ IL I F Sbjct: 260 QIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKLDAMTRILEVEEFDGVIAFV 319 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L FQ A++G++ QQ+R + +++GR + +ATDVAARG+D+ Sbjct: 320 RTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLDVE 379 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368 + VI+ ++ + E+ +HR GRTGRAGR G ++ F+ P+ + R E+ R+ + Sbjct: 380 RISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMH 439 Query: 369 WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFL 421 A +V +R + A+RI + ++ ++ L+A ++ E +IAA Sbjct: 440 LPTAETVNTLRLGKFAERITE------TLASEDVAPFRDLIASYEEEHNVPASEIAAALA 493 Query: 422 RIHRAGL-CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 + + G +E+ R+R +D F G +R +G++ + ++VG +Q+ Sbjct: 494 VMAQGGQPLLVKELPAAPEFQKRERSKD---GFGSRGPTRALTEGNATYRIAVGRRQRVM 550 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYL 536 ++ + GI+ IG I ++ D + VE+ AD + L RT + I L+ Sbjct: 551 PGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLELD 610 Query: 537 GGEKP 541 G KP Sbjct: 611 NGRKP 615 >gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 632 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 142/406 (34%), Positives = 227/406 (55%), Gaps = 15/406 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 22 KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 79 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 80 ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P++R++ +FSAT+ P Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A+ + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 256 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 316 RISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +++ G + M LL +++ E Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 416 >gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810] gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810] Length = 582 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 139/356 (39%), Positives = 201/356 (56%), Gaps = 13/356 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---ND 67 I EAL+ +G +Q L LR +D++ A+TG+GKT+ FG+ L +A N Sbjct: 42 IVEALAAKGITTPFPIQSLTLPVALRGRDIIGQAKTGTGKTLGFGIPLLQNSVAPGEPNP 101 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P P AL + PTRELAVQV +LE AK + + GG + + L+ G + Sbjct: 102 ADRPIGTPQALVVLPTRELAVQVAHDLETASAKRPIRILTVYGGRAYEPQIEALEKGVEV 161 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGRL D +R K L++S ++ VLDEADEMLDLGF +DIE +L + P KR+ ++FSA Sbjct: 162 VVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLQAVPVKRQTMLFSA 221 Query: 188 TISPAITTLAKNYQKDAVRV---NIASENRQHSDID---YRAVLVALSDRDNAIVNILRY 241 T+ I LA+ + K + + E+R +DI YRA + D+ + IL+ Sbjct: 222 TMPGPIMALARRFMKQPTHIRAHDPGDESRTKADIKQVVYRAHQL---DKIEVMARILQA 278 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G +I+F T+ R LA+ F L G+L Q R AL+ R G+ V +AT Sbjct: 279 RGRGLSIIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFRSGKIDVLVAT 338 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356 DVAARGID+ D+ V++ + + LHR+GRTGRAG+KG ++ FV +++ R A Sbjct: 339 DVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGRAGKKGTAITFVDWEDLARWA 394 >gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis ATCC 49540] gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis ATCC 49540] Length = 501 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 150/453 (33%), Positives = 228/453 (50%), Gaps = 17/453 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +QE + L+ +DV+ AQTG+GKT AFGL + + +N Sbjct: 14 KAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEHVDTDNPNIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ I+PTRELA+Q EL L V V V GG + R+ R+L+ I+VGTP Sbjct: 72 ----AIIISPTRELAIQTQEELFRLGKDKHVRVQVVYGGADIRRQIRNLKQHPQILVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ + + H+K +VLDEADEML++GF DDIE I+D +P R+ L+FSAT+ P Sbjct: 128 GRLRDHLNRHTVKLDHIKTLVLDEADEMLNMGFLDDIEAIIDQTPADRQTLLFSATMPPE 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + D V I ++ +D V ++ + + ++ IVF Sbjct: 188 IKKIGVKFMTDPTMVRIKAKELTTDLVDQYYVKARDYEKFDIMTRLIDVQDPDLTIVFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+LSQ R+ ++ + G + +ATDVAARG+D+ Sbjct: 248 TKRRVDELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDILVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369 + V + ++ S+P++ +HR GRTGRAG G+S+ FV P M R E+L R V ++ Sbjct: 308 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREIEKLTR---VRMLP 364 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAAGFLRIHRAG 427 P+ E + D L S E+ + + LLA HD + A L Sbjct: 365 LKPPTAEEAFKGQVASAFNDIDELISQDSTERYQEAAEKLLATHDATDLVAALL---NEM 421 Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460 P PV + R R + R + G G R Sbjct: 422 TKEPASDVPVKITPERPLPRRNHRNGRSGHGYR 454 >gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM 17244] gi|169258472|gb|EDS72438.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM 17244] Length = 510 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 212/377 (56%), Gaps = 9/377 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I L E G+ N T +Q + P +R DV+ +QTG+GKT+AF + + E ++ Sbjct: 15 INRVLDEMGFTNPTDIQNKAI-PAIRSGVDVIGKSQTGTGKTIAFAIPAIEKIDIEQEK- 72 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128 P + L I PTRELA Q E++ L + V I GGVS+ R+ L+ AHIV Sbjct: 73 -PTAQ--VLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKLK-KAHIV 128 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 +GTPGR+ DH++ + L + ++K VVLDEADEML +GF++DI+ IL ++P R+ ++FSAT Sbjct: 129 IGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQTVLFSAT 188 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + PAI + + K+ + + I E + I + V + + +L Y+G+K I Sbjct: 189 MPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHYYGSKLTI 248 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+T+ V TK L ++ F L G++ Q ERS + ++ + + +ATDVAARGI Sbjct: 249 IFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAARGI 308 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ-RRAERLFREANVSV 367 D+ D+E VI+ ++ N E +HR GRT R G+ G S+ + Q + + +E N + Sbjct: 309 DVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNNRKQVTDLKMILKETNSKI 368 Query: 368 VWEPAPSVEAIRERDAQ 384 P+ I ++++ Sbjct: 369 KKLDIPTKNDINSKNSK 385 >gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M143] gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M143] Length = 520 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + KD V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644] gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644] Length = 506 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 203/353 (57%), Gaps = 9/353 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QEA + L DV+ AQTG+GKT AFGL + + + + Sbjct: 23 KAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPILQHVDVKEEHIQ-- 80 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ ++PTRELA+Q EL L V V GG + R+ + L++ I+VGTP Sbjct: 81 ----AIVVSPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIKLLKHVPQILVGTP 136 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI K +++SH+K +VLDEADEMLD+GF +DIE I+ + P++R+ L+FSAT+ A Sbjct: 137 GRLLDHINRKTVDLSHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQTLLFSATMPKA 196 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ + + + V I ++ +D V ++ + + IL + IVF Sbjct: 197 IRSIGEKFMHEPQVVKIKAKELTTDLVDQYFVKAREYEKFDIMTRILDVQAPELTIVFGR 256 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V +K L + + G+L+QQ R N L+ ++GR + +ATDVAARG+D+ Sbjct: 257 TKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILVATDVAARGLDISG 316 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362 + V + ++ +PE+ +HR GRTGRAG G+SV FV P M+ R ERL ++ Sbjct: 317 VTHVYNYDIPQDPESYVHRIGRTGRAGHHGISVTFVTPNEMEYLRVIERLTKK 369 >gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases (Pfam: helicase_C.hmm, score: 90.11), similar to DEAD-box h [Arabidopsis thaliana] Length = 477 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 214/367 (58%), Gaps = 14/367 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++PQ + E+L +RG +L +Q A+L P L+ +D++ A+TG+GKT+AFG+ + L E Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167 Query: 66 NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118 ++ + P L +APTRELA QV +E++ + VC+ GGVS ++ Sbjct: 168 AGDYTAFRSLRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQ 224 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L G +VVGTPGR+ D I G+ L + ++ +VLDEAD+ML +GF + +E IL++ P Sbjct: 225 SALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPT 284 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIV 236 KR+ ++FSAT+ + LA+ Y + + +++ + + I A+ + + + Sbjct: 285 KRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILS 344 Query: 237 NILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +++ Y IVF T+ + L+ + AL G++SQ +R L R G+ Sbjct: 345 DLITVYAKGGKTIVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKF 403 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 V +ATDVA+RG+D+P+++LVIH EL ++PE +HRSGRTGRAG++G ++ + + +R Sbjct: 404 TVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRT 463 Query: 356 AERLFRE 362 L R+ Sbjct: 464 VRSLERD 470 >gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037] gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037] Length = 524 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + KD V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp. K31] gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31] Length = 678 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 192/339 (56%), Gaps = 6/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ GY T +Q A + L +DVL AQTG+GKT AF L L L+ N R A Sbjct: 15 QAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDKLM--NGRAK-A 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL IAPTRELA QV E T + A+ IGGVS + + L G +++ TP Sbjct: 72 RMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDRGVDVLIATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P K++ L FSAT+ P Sbjct: 132 GRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249 IT L K + KD VR+ + + +I V V SD + A+ ++ + IV Sbjct: 192 ITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALRALIEKAQIETGIV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+ + V K L H F A+ G+L Q +R+ L RDG ++ +A+DVAARG+D Sbjct: 252 FCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLKILVASDVAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P + V + ++ + ++ +HR GRTGRAGR G++ ++ Sbjct: 312 IPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLV 350 >gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211] gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211] Length = 539 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + EN P AL Sbjct: 41 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKINTEN----PVVQ--AL 94 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 95 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDL 154 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++H++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 155 IKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGV 214 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 215 KFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 274 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G + +ATDVAARG+D+ + V + Sbjct: 275 ELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVATDVAARGLDISGVTHVYN 334 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 335 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 369 >gi|298208437|ref|YP_003716616.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Croceibacter atlanticus HTCC2559] gi|83848360|gb|EAP86229.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Croceibacter atlanticus HTCC2559] Length = 372 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 209/355 (58%), Gaps = 15/355 (4%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFG 55 MK F ++ P+++ + L+E G +N T +QE + P L EK D + AQTG+GKT A+G Sbjct: 1 MKTFSDLGISPKLV-KGLTELGIINPTEIQEQAI-PVLLEKPTDFVGQAQTGTGKTAAYG 58 Query: 56 LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSV 114 L + + A + AL + PTRELA+QV ++L ++ + GG + Sbjct: 59 LPMLELINASKNHVQ------ALVLCPTRELAMQVSKQLFKFTKYSDKIFSETVYGGAQI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 ++ + LQ HI+V TPGRL D ++ K ++++++K VVLDEADEML +GF+ D++ IL Sbjct: 113 DKQIKALQRPTHIIVATPGRLVDLMKKKVVDLTNVKTVVLDEADEMLSMGFKKDLDTILS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 + P + +FSAT+ I + ++ +A+++ ++ +N + I+++ +LV +D+ Sbjct: 173 ALPATKNRWLFSATLPEGIRQIINSHLSSNAIKIKVSGKNVVNKKIEHKYILVEDADKLT 232 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 ++ L++ G + IVFC T+ + K L A+ G+L Q+ER ++ ++ Sbjct: 233 TLLQYLKFKGKERGIVFCKTKNTTKTLAKQLIAKNISADAIHGDLLQKERDKVMRAFKNE 292 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 R+ +ATD+ ARGID+ DL V+H EL S E HRSGRT RAG++GMS+ ++ Sbjct: 293 SLRILVATDLTARGIDVEDLAFVVHYELPSQDEFYTHRSGRTARAGKEGMSLAIV 347 >gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC 12755] gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC 12755] Length = 508 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/336 (38%), Positives = 191/336 (56%), Gaps = 9/336 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77 G+ T +QEA + L KDV+ AQTG+GKT AFGL + ++ PA+ L Sbjct: 20 GFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML-------EKIDPANHQLQG 72 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L IAPTRELA+Q EL L + V GG + R+ R L++ HIVVGTPGR+ D Sbjct: 73 LVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDRPHIVVGTPGRMLD 132 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI L + ++ +VLDEADEML++GF +DIE I+ P R+ L+FSAT+ PAI + Sbjct: 133 HINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQTLLFSATMPPAIKNIG 192 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + K+ V I ++ ID V ++ + + +L + IVF T+ V Sbjct: 193 VKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDVMTRLLDVQSPELTIVFGRTKRRV 252 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + L ++ + G+LSQQ+R + L+ + G+ + +ATDVAARG+D+ + V Sbjct: 253 DELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAARGLDISGVTHVY 312 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 313 NYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|239617313|ref|YP_002940635.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF 19.5.1] gi|239506144|gb|ACR79631.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF 19.5.1] Length = 524 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 158/510 (30%), Positives = 268/510 (52%), Gaps = 42/510 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++ + G+V T +Q + L +D++ A TG+GKT AFG+ L L + + Sbjct: 17 SIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLLEMLDYSSKKVQ--- 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELAVQV RE+ L + + + V GG S+ R+ L+ G +VVGTP Sbjct: 74 ---ALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTLKKGIQVVVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R K L + K VVLDEADEML++GF +DI +IL K+R++ MFSAT+ A Sbjct: 131 GRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQITMFSATMPKA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ +QK+ + + + S ++ + + S + +A+ ++ Y+ + ++VFC+ Sbjct: 191 IIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKLIEYYNPQLSLVFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V +L + V L G++SQ R+ + R+ +V +ATDVAARGID+ D Sbjct: 251 TKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVLVATDVAARGIDVDD 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 +E V + ++ + E +HR GRTGRAG+ G + F +++ R E + R + + Sbjct: 311 IEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLRE-IQRYTKIKIKSLN 369 Query: 372 APSVEAIRERDAQRILQDPLFLDSI--QG---DEKKMVDVLLAK-HDPEKIAAGFLRIHR 425 PS + + + + L + ++ I QG D V+ L+A+ + +IAA ++++ Sbjct: 370 VPSEKDVNTKRMESFLGE---INDILEQGNLSDYVPAVEELIARGYTSMEIAAALIKMN- 425 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL--SVGSKQKAEARW 483 VS R ++++ G+++N + L S GSK R Sbjct: 426 --------------VSKRAYSQNEA-------GAKNNNRDREMIKLFVSAGSKHNIRVRD 464 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++ + +GI IG+I + ++VEV Sbjct: 465 IVGAITGEAGIPGDRIGSIELLSKHSYVEV 494 >gi|307824650|ref|ZP_07654874.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] gi|307734304|gb|EFO05157.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] Length = 596 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 166/531 (31%), Positives = 260/531 (48%), Gaps = 48/531 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL + GY + +Q + L+ KDVL AQTG+GKT AF L + S + L + D Sbjct: 23 ALKDVGYETPSPIQAQTIPLLLQGKDVLGQAQTGTGKTAAFALPILSRIDLKQKD----- 77 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELA+QV + A G V GG + R L+ GAH+VVGT Sbjct: 78 --PQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKRGAHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R LN+ L +VLDEADEML +GF DD+E+ILD P+KR++ +FSAT+ Sbjct: 136 PGRVMDHMRKGTLNLKGLGFLVLDEADEMLRMGFIDDVEWILDQIPEKRQIALFSATMPS 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ Y + + I +I R LV+ + +A+ IL I+F Sbjct: 196 VIRKIAQQYLNEPEHITIKVTTASAENIRQRYWLVSGVHKLDALTRILEAETFDGMIIFV 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ S + L + A++G++SQ R A+ +++G+ + IATDVAARG+D+ Sbjct: 256 RTKTSTVELAEKLEARGYSAAAINGDMSQALRERAIANLKNGKLDILIATDVAARGLDVD 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ------NMQRRAERLFREAN 364 + V++ ++ + E+ +HR GRTGRAGR G ++ F+ P+ N+++ ++ E Sbjct: 316 RITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFIAPRERNLLANIEKATKQKVEEMG 375 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424 + PS E I + R Q+ D++ +E LL ++ E L I Sbjct: 376 L-------PSTEVINNKRISRFKQN--ITDTLAAEELSFFSQLLEQYQQEHNVTA-LEIA 425 Query: 425 RAGLCAPEEITPVSL--------------------VSGRDRFRDDSRAFKVGGGSRDNFK 464 A + TP+ L + DR + D + + GG D Sbjct: 426 SALAKLVQGETPLLLQNLPKKSKDSRDDRPSRDDRSARPDRPQKDRKPKRAFGGGAD--I 483 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + + VG + ++ + +GI+ I IR+Q D + VE+ A Sbjct: 484 EMETYRIEVGHTHGVKPGNIVGAIANETGIDGDHIARIRIQDDYSTVELPA 534 >gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like [Chlorobium chlorochromatii CaD3] gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3] Length = 640 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 138/383 (36%), Positives = 213/383 (55%), Gaps = 19/383 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+++ +AL E GY + T +Q + L +DVL AQTG+GKT AF L + +++ + Sbjct: 16 QLPELLMKALEEVGYESPTPIQAQTIPFLLAGRDVLGQAQTGTGKTAAFALPILASIDIQ 75 Query: 66 NDRFSPASAPLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + P AL +APTRELA+QV R E+L G V GG + R L Sbjct: 76 Q------AEPQALVLAPTRELAIQVAEAFQRYAEYL---KGFHVVPIYGGQDYGIQFRML 126 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G +VVGTPGR+ DHIR LN++HLK +VLDEADEML +GF DD+E+IL+ +P R+ Sbjct: 127 RRGVQVVVGTPGRVMDHIRRGSLNLTHLKTLVLDEADEMLRMGFIDDVEWILEQTPAGRQ 186 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 + +FSAT+ P I +A+ Y V I ++ I R +V S + + + IL Sbjct: 187 VALFSATMPPPIRRIAQKYLDQPAEVTIQTKTTTVDTIRQRYWVVGGSHKLDILTRILEV 246 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 I+F T+ + L + AL+G++ Q +R ++ +++G + +AT Sbjct: 247 EPFDGMIIFSRTKTMTIELAEKLQARGYAAAALNGDMPQNQRERTIEQLKNGNINIVVAT 306 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAER 358 DVAARG+D+ + V++ ++ S+ E+ +HR GRTGRAGR G ++ FV P +NM E+ Sbjct: 307 DVAARGLDVERISHVVNYDIPSDTESYVHRIGRTGRAGRAGDAILFVAPREKNMLYAIEK 366 Query: 359 LFREANVSVVWEPAPSVEAIRER 381 R +V P+ E I + Sbjct: 367 ATRSRIEQMVL---PTTEVINNK 386 >gi|170025939|ref|YP_001722444.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis YPIII] gi|169752473|gb|ACA69991.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis YPIII] Length = 664 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 175/574 (30%), Positives = 273/574 (47%), Gaps = 55/574 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AFGL L + A+ Sbjct: 21 ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNIKAD------LK 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +P L +APTRELAVQV L GV V GG + R L+ G +VVGTP Sbjct: 75 SPQVLVLAPTRELAVQVAEALSSFSKHINGVKVVALYGGQRYDVQLRALRQGPQVVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPEA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAIVFC 251 I + + + K+ V I S DI V R N A+V L AI+F Sbjct: 195 IRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAEDFDAAIIFV 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 255 RTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + + R +++ Sbjct: 315 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIERTMKLTIPEVE 374 Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421 P+ + + ER A ++ Q ++ + M LLAK PE+ +AA L Sbjct: 375 LPNADLLSERRLAKFAAKVSQ------QLESSDLDMYRALLAKLQPEEEFDIETLAAALL 428 Query: 422 RI---HRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----------- 466 ++ R + PE P + RD +D + G RDN S Sbjct: 429 KMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSRSADSRDGGER 488 Query: 467 ------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV- 513 + + VG E R ++ + I+ + IG I++ + +E+ Sbjct: 489 PARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 548 Query: 514 ---SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 + + RT L+K + ++ LG +P R Sbjct: 549 KGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 582 >gi|303325606|ref|ZP_07356049.1| ATP-dependent RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3] gi|302863522|gb|EFL86453.1| ATP-dependent RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3] Length = 541 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/374 (35%), Positives = 207/374 (55%), Gaps = 7/374 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P+ + A + G+ +L VQ L L +D++V ++TGSGKT + L + L E Sbjct: 48 DLPEAMHAACARAGWQSLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLPRLDPE 107 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 AP AL +APTRELAVQV RE ++A TG+ GGV ++ L+ GA Sbjct: 108 ------LKAPQALVLAPTRELAVQVEREAAVIFADTGIRTVAVYGGVGYKKQMDALREGA 161 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RMLM 184 ++VGTPGR+ DH+ + L++ L+ +V DEAD ML +GF D++ + PKKR + Sbjct: 162 QVIVGTPGRVLDHLLRRTLDLKDLRVLVFDEADRMLSIGFYPDMKEVQRYLPKKRIHTCL 221 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT P + LA + + ++++ + +++ + V D+D A+V +L Sbjct: 222 FSATYPPHVLKLAAEFMSEPALLSLSQKEVHVAEVQHLFCEVKPMDKDRALVRLLETENP 281 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +AI+FC+T+A+V T VL + LS +LSQ R L +R GR + +ATDVA Sbjct: 282 ASAIIFCNTKANVHYVTGVLQGFGYSADELSADLSQNRREAVLDKIRKGRLQYLVATDVA 341 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+P L V E + E+ +HR+GRTGRAG G + ++ + ER+ + Sbjct: 342 ARGIDIPALSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDVMQRMELERIAKHYK 401 Query: 365 VSVVWEPAPSVEAI 378 + ++ P P+ E + Sbjct: 402 IGLMELPLPTDEDV 415 >gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7] gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna binding domain protein [Pseudomonas aeruginosa PA7] Length = 458 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 199/356 (55%), Gaps = 8/356 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ +D++ A+TGSGKT AFGL L + L N R+ A Sbjct: 19 LDSLGYREMTPIQAQSLPLILQGRDLIAQAKTGSGKTAAFGLGLLAPL---NPRYFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A + V GGV + L++GAH+VVGTPG Sbjct: 76 ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + L +VLDEAD MLD+GF D I I+ P++R+ L+FSAT I Sbjct: 133 RIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK + +D +V + S + S I+ R + R +A+V +L++ ++ + FC T Sbjct: 193 EKLAKAFMRDPQQVKVESLHTD-SQIEQRFFEIDPKQRMDAVVRLLQHFRPQSCVAFCQT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R L H +AL G+L Q+ER L + + V +ATDVAARG+D+ L Sbjct: 252 RQQCQELADALKAHRISALALHGDLEQRERDQVLTVFANRSCTVLVATDVAARGLDIAAL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 E VI+ EL+ +PE +HR GR+GRAG KG+++ ++ RA+ + + W Sbjct: 312 ETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQPLAW 367 >gi|261401858|ref|ZP_05987983.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria lactamica ATCC 23970] gi|269207983|gb|EEZ74438.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria lactamica ATCC 23970] Length = 457 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 204/354 (57%), Gaps = 18/354 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 362 >gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus silvanus DSM 9946] gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM 9946] Length = 538 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 142/403 (35%), Positives = 214/403 (53%), Gaps = 31/403 (7%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K F P+V+ AL +G+ T++Q + L +DVL A+TG+GKT+AF L +A Sbjct: 3 FKDFALRPEVLA-ALEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIAH 61 Query: 61 TL---------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111 L +A R P P A + PTRELA+QV EL W+ V+ GG Sbjct: 62 KLEAPFRGDSRVASRQRGRP---PRAFILTPTRELALQVAGELAWVAPHLHVLP--IYGG 116 Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171 + L+ GA +VV TPGR D++ L++SH++ VLDEADEML +GF +D+E Sbjct: 117 TGYGSQAEGLRRGADVVVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEK 176 Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 +L ++P R+ +FSAT+ LA+ Y +D V VN+ + + + A+ L R Sbjct: 177 LLGATPASRQTFLFSATVPSWAKRLAERYMRDPVHVNVVKD--EQVSYEELALQAPLQTR 234 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 N + +++ + + IVF T+A V L + G++SQ+ER L R Sbjct: 235 LNTLTDVIFAYAPERTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRFR 294 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIP- 349 +G V +ATDVAARG+D+P+++LV+H L E HRSGRTGRAGR G + +F P Sbjct: 295 EGTDTVLVATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRSGRVILFYGPR 354 Query: 350 -----QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387 +N++ +R F+ N P+ E ++E QR+L Sbjct: 355 ERRELENLEYAVKRRFKRVN-------PPTPEEVQEAKWQRLL 390 >gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 648 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 142/406 (34%), Positives = 227/406 (55%), Gaps = 15/406 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 38 KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 95 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 96 ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 151 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P++R++ +FSAT+ P Sbjct: 152 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPP 211 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 212 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 271 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A+ + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 272 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 331 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 332 RISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 391 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +++ G + M LL +++ E Sbjct: 392 L---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 432 >gi|313667868|ref|YP_004048152.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640] gi|313005330|emb|CBN86763.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06] Length = 457 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 204/354 (57%), Gaps = 18/354 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64 AL+ +GY T +Q A + L D+L +AQTG+GKT AF L A AST Sbjct: 17 ALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ + ++ + V GG+++ ++ DL+ Sbjct: 74 -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRA 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI I+ P++R+ L Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+++ V +A++N +++++ + V + N + ++ Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ SV R T+ L A+ G+ SQQ R L +DG RV +ATD+ Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 AARG+D+ +L VI+ E+ + PE+ +HR GRTGRAG G+++ ++ ++ Q+ E Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 362 >gi|308272111|emb|CBX28719.1| DEAD-box ATP-dependent RNA helicase cshA [uncultured Desulfobacterium sp.] Length = 548 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 158/529 (29%), Positives = 269/529 (50%), Gaps = 39/529 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +A++++G+ T++Q + P ++ D ++V AQTG+GKT AFGL L + + Sbjct: 25 DAINKKGFEEPTAIQVMTI-PVMQRDDTNIIVQAQTGTGKTAAFGLPLVEMV------ST 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +S AL + PTRELA+QV E+ L +V+A GG S+ ++ R LQ G HIVVG Sbjct: 78 GSSMVQALILVPTRELAIQVSEEINSLRGNKDIVIAPIYGGQSIDQQLRRLQKGVHIVVG 137 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ K L + ++ ++LDEADEML++GF +DIE I+ + +R L+FSATI Sbjct: 138 TPGRVIDHLNRKTLKLEKIEHLILDEADEMLNMGFIEDIEEIMKHTNPDKRTLLFSATIP 197 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA Y K + + E + + V D+ A+ I+ ++F Sbjct: 198 QRIKDLAHKYMKGYEFLKVKKEQLTTNLTEQIYFEVKAHDKFEALCRIIDIKDGFYGLIF 257 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T++ V L + + A+ G++SQ +R L+ + R + +ATDVAARGID+ Sbjct: 258 CRTKSDVDSVATHLMDRGYDAEAIHGDISQAQRERTLEKFKKQRVNILVATDVAARGIDV 317 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN------MQRRAERLFREA 363 +L VI+ L + E +HR GRTGRAG G ++ F+ P +QR A+ +++ Sbjct: 318 NNLTHVINYSLPHDTEAYVHRIGRTGRAGNVGTAITFITPSEYKGLMFIQRNAKTDIKKS 377 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 V V + + + D IL++ + + + +L + PE+I A L Sbjct: 378 KVPKVKDIIKAKKKKIYDDLTTILKEEIDTAYLSWAVR-----MLEDNKPEEILAAVL-- 430 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD--NFKGSSWFSLSVGSKQKAEA 481 C EE+ P D + + ++G + N +G + +++G + K Sbjct: 431 ---NYCFEEELNP-------DAYGEIE---EIGAKVKQQLNKQGKARLFVALGKQDKTSP 477 Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530 R L+ ++ S + + I I++ +F+ V + +++ + K +KG Sbjct: 478 RKLVELIGSKSSVKSKDISEIQIMDKFSFITVPFEKAEIIVASFK-EKG 525 >gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase domain-containing protein [Clostridium cellulovorans 743B] gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium cellulovorans 743B] gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans 743B] Length = 536 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 167/541 (30%), Positives = 266/541 (49%), Gaps = 40/541 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+++ G+ + +Q + + D++ AQTG+GKT AFG S +L Sbjct: 11 NLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFG----SIIL-- 64 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N+ P AL +APTRELA+QV EL + + + GG + R+ R L+NG Sbjct: 65 NNMSEKRRVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQLRALRNGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGR+ DH+R K LN +K +VLDEADEML++GF DDIE ++ S + R+ L+F Sbjct: 125 DIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQTLLF 184 Query: 186 SATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT+ AI L+K Y K DA ++I S I + SDR ++ I+ Sbjct: 185 SATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIIDADEP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AI+FC T+ V + + V + G+++Q +R N L+ ++ +ATDVA Sbjct: 245 EAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ ++ VI+ +L + E+ +HR GRTGRA ++G + ++ +++ + Sbjct: 305 ARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQIEKTTK 364 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGF 420 + P+V+ I + + +L D+I+ ++ + D + +AA Sbjct: 365 SKIKRNSVPTVDEIYDVKYKNVLNK--VRDTIENEDLSKFIPYATELDDDYSLVDVAAAL 422 Query: 421 LRIHRAGLCAPEEIT-------PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 ++I + A E T P+ S R R R F V G RDN Sbjct: 423 MKIAFSNELAYEYTTNALEVPEPMRNSSARGASRGQKRLF-VSAGRRDN----------- 470 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533 + L+ SS I + IG I + + +FV V VD + +K G +L Sbjct: 471 -----VSPKELVQFFKDSSRIQPRQIGDIAIMENFSFVNVDTSIVDDI---LKFSSGKRL 522 Query: 534 K 534 K Sbjct: 523 K 523 >gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM 3776] gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM 3776] Length = 608 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 214/387 (55%), Gaps = 17/387 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I A++ GYVN T +Q + + +DVL AQTG+GKT AF + + + Sbjct: 18 NISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGTGKTAAFAIPMLQAIDLS 77 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124 +SA L +APTRELA+QV E A G+ VA GG + R L G Sbjct: 78 ------SSATQVLILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQDYQLQFRQLNRG 131 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AH++VGTPGR+ DHIR L + LK +VLDEADEML +GF +D+E+IL+ +P +R++ + Sbjct: 132 AHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWILEQTPSQRQIAL 191 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ +I +A+ + K+ + I I R + V ++ + IL Sbjct: 192 FSATMPDSIRRIAQKHLKNPAEITIKRRTATAETIRQRFITVPPFQKEAVLARILETEPI 251 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F T+++ + LA ++ ALS ++ Q +R ++ ++ GR + IATDVA Sbjct: 252 DAVIIFVKTKSTTVPLAEFLASQGYRTAALSSDVPQAQRERIVEHLKSGRLDIVIATDVA 311 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFR 361 ARG+D+ + VI+ +L S+ E+ +HR GRTGRAGR+G ++ F+ P+ RR E++ R Sbjct: 312 ARGLDVQRITHVINFDLPSDSESYVHRIGRTGRAGRQGDTILFLHPRERFQLRRIEQVTR 371 Query: 362 EANVSVVWEP--APSVEAIRERDAQRI 386 + EP P+ + ER +R Sbjct: 372 QP-----IEPMQVPAAAQVNERRIERF 393 >gi|311279320|ref|YP_003941551.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter cloacae SCF1] gi|308748515|gb|ADO48267.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1] Length = 457 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 209/362 (57%), Gaps = 10/362 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY +T VQ A L L KDV A+TGSGKT AFGL L + + +F S Sbjct: 18 LNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHI--DASQFITQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV L L + V+ +C GG+ +R L + HI+V TP Sbjct: 75 ---LVLCPTRELADQVASALRKLARFMPNIKVLTLC-GGLPFSVQRDSLTHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L+ +VLDEAD MLD+GF D ++ ++ +P+KR+ L+FSAT Sbjct: 131 GRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADALDEVIAWAPEKRQTLLFSATWPAE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +++ Q+D + + I + + + ++ R V+ S + + +L H + +VFC+ Sbjct: 191 IAAISRRIQRDPLTIEIDTVDELPA-VEQRFYEVSRSGKIGLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L++ V+AL G++ Q++R L +G +RV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALSDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKA 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 LE+VI+ ELS +PE +HR GRT RAG +G+++ + +RA L NV + W+P Sbjct: 310 LEMVINYELSWDPEVHVHRIGRTARAGERGLAISLCAPEEAQRANALEEMLNVKLDWQPL 369 Query: 373 PS 374 P+ Sbjct: 370 PN 371 >gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum 'So ce 56'] gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 812 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 198/341 (58%), Gaps = 7/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L+E GYV+ T VQ A+ P R +D +V A+TG+GKT AFGL + + + S A Sbjct: 41 ETLAEIGYVHPTPVQLAVWEPVTRGRDAVVQARTGTGKTAAFGLPIVDHAV----KRSLA 96 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + LA+ PTRELA+QV E+E L + G+ V GG + R+ L GA ++VGTP Sbjct: 97 QAQV-LALCPTRELALQVSAEVERLGKRKGIKVVAVYGGAPMQRQIDALAAGAQVIVGTP 155 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R + H++ +VLDE DEML +GF ++ IL P +R+ L+FSAT+ P Sbjct: 156 GRVLDHLRRGTIVAKHIRLLVLDECDEMLSMGFERELTAILAELPPERQTLLFSATLPPD 215 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A++ + + ++ + I + L+ D+ ++V I+ +NA++FC+ Sbjct: 216 IERIARSKLRSPEFITLSGDAVGALQIQHYVYLIT-GDKLTSLVRIIEVENPENAVIFCN 274 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + L+G+L Q +R + R+GR R +ATDVAARGID+ Sbjct: 275 TKDETEAVAGALKRQGYDADWLNGDLPQSDREKVMSATREGRLRFLVATDVAARGIDISH 334 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNM 352 L VI+ + + E +HR+GRTGRAGR G ++ +I PQ++ Sbjct: 335 LTHVINYDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQDV 375 >gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5] gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5] Length = 525 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 192/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E + AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEE------ATIQAL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + KD V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16] gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16] Length = 458 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 139/378 (36%), Positives = 211/378 (55%), Gaps = 11/378 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + E L GY +T +Q+ L L KDV+ +TGSGKT F L L S L Sbjct: 9 NLRPELTETLDSLGYTEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVS 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124 R L + PTRELA QV +E+ L + V GG+ + + L++G Sbjct: 69 RFRVQ------TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHG 122 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHI+VGTPGR+ DH+ +++ L +VLDEAD MLD+GF + I+ I++++P KR+ L+ Sbjct: 123 AHILVGTPGRILDHMSKGRISLKELNTLVLDEADRMLDMGFEEAIDTIIEAAPSKRQTLL 182 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHG 243 FSAT I +L++ V + S Q S I+ R L + +RD+A+ +L H Sbjct: 183 FSATFPDNIESLSEKVMVAPEMVKVES-THQKSTIEQRFFKLNSTEERDDALEALLLTHK 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++++VFC+T+ V T L+ F VV L G++ Q+ER AL M + + +ATDV Sbjct: 242 PESSVVFCNTKKEVQNVTDELSHRGFSVVELHGDMEQREREQALTMFANKSISILVATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ +L+ V + ELS +PE +HR GRTGRAG KG++ + + R R+ Sbjct: 302 AARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARIDEYM 361 Query: 364 NVSVVWEPAPSVEAIRER 381 +++V P+ E + ER Sbjct: 362 DIAV--SPSELPEKLIER 377 >gi|21957415|gb|AAM84284.1|AE013672_2 inducible ATP-independent RNA helicase [Yersinia pestis KIM 10] gi|45435306|gb|AAS60865.1| inducible ATP-independent RNA helicase [Yersinia pestis biovar Microtus str. 91001] Length = 669 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 175/574 (30%), Positives = 273/574 (47%), Gaps = 55/574 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AFGL L + A+ Sbjct: 26 ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNIKAD------LK 79 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +P L +APTRELAVQV L GV V GG + R L+ G +VVGTP Sbjct: 80 SPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQLRALRQGPQVVVGTP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 140 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPEA 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAIVFC 251 I + + + K+ V I S DI V R N A+V L AI+F Sbjct: 200 IRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAEDFDAAIIFV 259 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 260 RTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 319 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + + R +++ Sbjct: 320 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIERTMKLTIPEVE 379 Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421 P+ + + ER A ++ Q ++ + M LLAK PE+ +AA L Sbjct: 380 LPNADLLSERRLAKFAAKVSQ------QLESSDLDMYRALLAKLQPEEEFDIETLAAALL 433 Query: 422 RI---HRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----------- 466 ++ R + PE P + RD +D + G RDN S Sbjct: 434 KMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSRSADSRDGGER 493 Query: 467 ------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV- 513 + + VG E R ++ + I+ + IG I++ + +E+ Sbjct: 494 PARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 553 Query: 514 ---SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 + + RT L+K + ++ LG +P R Sbjct: 554 KGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 587 >gi|317046747|ref|YP_004114395.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp. At-9b] gi|316948364|gb|ADU67839.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b] Length = 640 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 175/565 (30%), Positives = 277/565 (49%), Gaps = 43/565 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GYV + +Q + L +DVL AQTGSGKT AF L L + + Sbjct: 20 ALNDMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNIDPN------LK 73 Query: 74 APLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV E+ GV V GG + R L+ G IVVGTP Sbjct: 74 APQILVLAPTRELAVQVAEAATEFSKHMRGVNVLALYGGQRYDVQLRALRQGPQIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ L++S+L+ +VLDEADEML +GF +D+E I+ P+ + +FSAT+ A Sbjct: 134 GRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEA 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + K + KD V I S DI ++ A + +A+V L AI+F Sbjct: 194 IRRITKRFMKDPQEVRIQSSVTTRPDIS-QSYWTAYGRKTDALVRFLEAEDFDAAIIFVR 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 253 TKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 313 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 372 Query: 373 PSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLR 422 P+ E + ER A ++ Q ++ + M LL+K PE+ +AA L+ Sbjct: 373 PNAELLGERRLAKFAAKVQQ------QLESSDLDMYRALLSKMQPEEDLDMETLAAALLK 426 Query: 423 I---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------------S 467 + R + P+ P R DSR + G RD+ G Sbjct: 427 MAQGERPLILPPDAPRPQRREFRDRDDRRDSRDSRDSRGPRDSRDGDRPRRERRDVGEMQ 486 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523 + + VG E R ++ + I+ + IG I++ + +E+ + + R Sbjct: 487 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTR 546 Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKS 548 T L+K + ++ LG +P RG ++ Sbjct: 547 TRILNKPMNMQLLGDAQPFERGERN 571 >gi|330960515|gb|EGH60775.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 559 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 172/554 (31%), Positives = 288/554 (51%), Gaps = 35/554 (6%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + L+ Sbjct: 11 LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH-LI 68 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDL 121 + R P AL +APTRELA+QV E YAK GV V GG + + + + Sbjct: 69 DPSKR-----EPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKAI 122 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 +NGA IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R+ Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 ++FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEV 242 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 I+F T+ + L ++ AL+G+++Q +R ++ ++DGR + +AT Sbjct: 243 EDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVAT 302 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + R Sbjct: 303 DVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIER 362 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPEK 415 V P +A+ + +++ PL D S GD ++D L A P Sbjct: 363 VTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPRA 419 Query: 416 IAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN--------- 462 +AA LR G L A E P+ + + R R+ G R Sbjct: 420 LAAALLRKATNGQALTLAAIERERPL-VPNNAPRGDRPERSGSSDRGDRPERERRAPVPL 478 Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522 +G + ++G++ A+ L+ + G+ R++IG I+V+ + VE+ DG++ L Sbjct: 479 AEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLL 538 Query: 523 RTVKLDK--GIQLK 534 +K + G QLK Sbjct: 539 TKLKDTRVAGKQLK 552 >gi|26988598|ref|NP_744023.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440] gi|148549053|ref|YP_001269155.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida F1] gi|24983373|gb|AAN67487.1|AE016375_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida KT2440] gi|148513111|gb|ABQ79971.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1] gi|313499970|gb|ADR61336.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1] Length = 559 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 164/547 (29%), Positives = 279/547 (51%), Gaps = 29/547 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + + + Sbjct: 15 PNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVSK- 72 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 P AL +APTRELA+QV E YAK GV V GG + + R ++NGA Sbjct: 73 -----REPQALILAPTRELALQVATAFET-YAKQMPGVNVVAVYGGAPMGPQLRAIRNGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRLCDH+R +S ++ +VLDEADEML LGF DD+E I D+ P R+ ++F Sbjct: 127 QIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I ++A+ + ++ V I ++ + + I+ ++V + A++ +L Sbjct: 187 SATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I F T+ + L ++ AL+G+++Q +R + ++DGR + +ATDVAA Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+P + V + ++ +PE+ +HR GRTGRAGR G ++ ++ +R + + R Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQ 366 Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFL 421 V P+ +A+ + +++ PL ++ + ++ D L +A+ L Sbjct: 367 KVAEARLPNAQAVLDARIKKLTSSLAPLVAEA-EATHGELFDRLTTDLGCSARALASALL 425 Query: 422 RIHRAG----LCAPEEITPV--SLVSGRDRFRDDSRAFKVGGGSRDN------FKGSSWF 469 R G L A E P+ S +R R + G R+ +G Sbjct: 426 RKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRAPLPLAEGRVRC 485 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529 ++G++ A+ L+ + G+ R +IG I+V+ + VE+ DG++ L +K + Sbjct: 486 RTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLKDTR 545 Query: 530 --GIQLK 534 G QLK Sbjct: 546 VAGKQLK 552 >gi|330998021|ref|ZP_08321852.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841] gi|329569322|gb|EGG51102.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841] Length = 664 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 143/413 (34%), Positives = 225/413 (54%), Gaps = 17/413 (4%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGL 56 MK FE + I +A+ E GY + VQE ++ P L DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEELGVSAEIRQAIEEMGYEHPMPVQEEVI-PYLLGVNNDVVALAQTGTGKTAAYGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 + + A + AL ++PTREL +Q+ +LE Y+K GV V GG ++ Sbjct: 60 PVLQKVDASRNETQ------ALILSPTRELCLQIADDLEN-YSKYLPGVRVLPVYGGANI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G ++V TPGRL D + K ++ H++ VVLDEADEML +GF + I+ IL Sbjct: 113 EPQIRTLRKGVQVIVATPGRLIDLMERKAASLEHVENVVLDEADEMLSMGFTESIDKILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P+ L+FSAT+S I ++K Y +DA + + S N +++ +V D+ A Sbjct: 173 GVPENHNTLLFSATMSREIERISKKYLRDAKEIVVGSRNEGAETVNHVYYMVHAKDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ AI+FC TR L + + +L G+LSQQ+R +Q R R Sbjct: 233 LKRIVDYYPKIYAIIFCRTRLETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHR 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + +ATDVAARG+D+ DL VI+ + + EN HRSGRTGRAG+KG S+ ++ + Sbjct: 293 VQFLVATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERS 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + + V PS + I + +++ D ++ ++ DE+++ L Sbjct: 353 KIREIEKVIGKEFVKGEMPSGKEICAKQLYKVIDD---IERVEVDEEEIEQFL 402 >gi|218887342|ref|YP_002436663.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758296|gb|ACL09195.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 990 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 209/378 (55%), Gaps = 9/378 (2%) Query: 3 IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 N+P ++ EA + G+ NL VQ L ++D++V ++TGSGKT AF L L Sbjct: 112 TLANLPPMMQEAAARAGWTNLMPVQTHALPYIFAKRDLMVQSRTGSGKTGAFLLPLL--- 168 Query: 63 LAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +R SP A AL + PTRELA+QV E L+ TG+ VA GGV ++ L Sbjct: 169 ----ERLSPDEPAVQALILVPTRELALQVEYEARVLFEGTGLNVAAVYGGVGYGKQMDAL 224 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 ++GAH+VVGTPGR+ DH+ + +N+ ++A+V DEAD ML +GF D++ I PK+R Sbjct: 225 RDGAHLVVGTPGRVLDHLLRRTMNLDRIRALVFDEADRMLSIGFYPDMKEIQRYLPKRRI 284 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 +FSAT P + LA + + ++++ + + + D+D A+V I+ Sbjct: 285 SAYLFSATYPPHVLNLAGEFLSEPRMLSLSHQQVHVAQTQHLYCETKPMDKDRALVRIIE 344 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 AI+FC+T+A+V T VL + LS +L+Q +R L +R G R +A Sbjct: 345 SENPTAAIIFCNTKANVHYVTAVLQGFGYNADELSADLTQAKREQVLGSLRKGGVRFLVA 404 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGID+PDL VI E + E+ +HR+GRTGRAG G + ++ + +R+ Sbjct: 405 TDVAARGIDIPDLSHVILYEPPEDRESYIHRAGRTGRAGSAGTVISLVDIIQKLELQRIA 464 Query: 361 REANVSVVWEPAPSVEAI 378 + + + P P E++ Sbjct: 465 KHYKIDIQHRPTPDDESV 482 >gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] Length = 602 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 166/554 (29%), Positives = 286/554 (51%), Gaps = 59/554 (10%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY + + +Q A + P L DV+ AQTG+GKT AF + + L + Sbjct: 43 AIADVGYESPSPIQAATIPPLLDGADVVGLAQTGTGKTAAFAIPILMGLEVTGRQ----- 97 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL +APTRELA+QV + G+ V GG S + L+ GAH+VVGTP Sbjct: 98 -PRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGTP 156 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++S L+ +VLDEADEML +GF++D+E IL +P+++++ +FSAT+ A Sbjct: 157 GRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTPREKQVALFSATMPAA 216 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++K Y ++ V + + ++ + +++I R V V+ + +A+ +L + I+F Sbjct: 217 IRKISKQYLREPVEITVKAKTQTNTNITQRWVQVSHQRKLDALTRVLEVEPFEAMIIFVR 276 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L F A++G+++Q +R + ++ G + +ATDVAARG+D+ Sbjct: 277 TKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILVATDVAARGLDVDR 336 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFREANVSVVW 369 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P+ ++ + ER R + Sbjct: 337 ISHVVNYDIPHDTESYVHRIGRTGRAGRSGQALLFVAPRERHLLKAIERATRHPLEEMQL 396 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP--EKIAAGFLRIHRAG 427 PSVE + +AQR+ + F D+I + L + + P K+ + R H Sbjct: 397 ---PSVEDV---NAQRVSK---FGDAI-------TENLSSANLPLFRKLIEDYEREHNIP 440 Query: 428 LCAPEEITPVSLVSGRDRFRD---------------DSRAF--KVGGGSRDNFKGS--SW 468 L V G + F + +R F + GGGS G+ + Sbjct: 441 LVDIAAALAVGSYDGDNFFMEAEPEPERRERVPRERPARRFDEERGGGSHHRATGTELAT 500 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRT 524 + +SVG + + ++ + G+ R G I ++PD + VE + A+ ++ LRRT Sbjct: 501 YRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPAQLPAETLEALRRT 560 Query: 525 --------VKLDKG 530 ++LD+G Sbjct: 561 RISGVLIQLQLDQG 574 >gi|51594838|ref|YP_069029.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP 32953] gi|108808981|ref|YP_652897.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Antiqua] gi|108810764|ref|YP_646531.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Nepal516] gi|145600551|ref|YP_001164627.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Pestoides F] gi|153947592|ref|YP_001402544.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP 31758] gi|153997472|ref|ZP_02022572.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125] gi|161484874|ref|NP_668033.2| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM 10] gi|161511438|ref|NP_991988.2| ATP-dependent RNA helicase DeaD [Yersinia pestis biovar Microtus str. 91001] gi|162420533|ref|YP_001608294.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Angola] gi|165925696|ref|ZP_02221528.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936744|ref|ZP_02225311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. IP275] gi|166010049|ref|ZP_02230947.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. E1979001] gi|166214269|ref|ZP_02240304.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. B42003004] gi|167398750|ref|ZP_02304274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420623|ref|ZP_02312376.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423076|ref|ZP_02314829.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186893847|ref|YP_001870959.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis PB1/+] gi|218930502|ref|YP_002348377.1| ATP-dependent RNA helicase DeaD [Yersinia pestis CO92] gi|229839140|ref|ZP_04459299.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896629|ref|ZP_04511796.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A] gi|229899704|ref|ZP_04514845.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229900962|ref|ZP_04516086.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|270489144|ref|ZP_06206218.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27] gi|294505188|ref|YP_003569250.1| cold-shock dead-box protein A [Yersinia pestis Z176003] gi|51588120|emb|CAH19726.1| cold-shock dead-box protein A [Yersinia pseudotuberculosis IP 32953] gi|108774412|gb|ABG16931.1| cold-shock dead-box protein A [Yersinia pestis Nepal516] gi|108780894|gb|ABG14952.1| cold-shock dead-box protein A [Yersinia pestis Antiqua] gi|115349113|emb|CAL22076.1| cold-shock dead-box protein A [Yersinia pestis CO92] gi|145212247|gb|ABP41654.1| cold-shock dead-box protein A [Yersinia pestis Pestoides F] gi|149289109|gb|EDM39189.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125] gi|152959087|gb|ABS46548.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pseudotuberculosis IP 31758] gi|162353348|gb|ABX87296.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis Angola] gi|165915393|gb|EDR34003.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. IP275] gi|165922308|gb|EDR39485.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990956|gb|EDR43257.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204501|gb|EDR48981.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. B42003004] gi|166961429|gb|EDR57450.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051254|gb|EDR62662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057246|gb|EDR66992.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186696873|gb|ACC87502.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis PB1/+] gi|229682301|gb|EEO78393.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|229687196|gb|EEO79271.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229695506|gb|EEO85553.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700407|gb|EEO88439.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A] gi|262363250|gb|ACY59971.1| cold-shock dead-box protein A [Yersinia pestis D106004] gi|262367181|gb|ACY63738.1| cold-shock dead-box protein A [Yersinia pestis D182038] gi|270337648|gb|EFA48425.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27] gi|294355647|gb|ADE65988.1| cold-shock dead-box protein A [Yersinia pestis Z176003] gi|320016694|gb|ADW00266.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 664 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 175/574 (30%), Positives = 273/574 (47%), Gaps = 55/574 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AFGL L + A+ Sbjct: 21 ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNIKAD------LK 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +P L +APTRELAVQV L GV V GG + R L+ G +VVGTP Sbjct: 75 SPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQLRALRQGPQVVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPEA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAIVFC 251 I + + + K+ V I S DI V R N A+V L AI+F Sbjct: 195 IRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAEDFDAAIIFV 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 255 RTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + + R +++ Sbjct: 315 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIERTMKLTIPEVE 374 Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421 P+ + + ER A ++ Q ++ + M LLAK PE+ +AA L Sbjct: 375 LPNADLLSERRLAKFAAKVSQ------QLESSDLDMYRALLAKLQPEEEFDIETLAAALL 428 Query: 422 RI---HRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----------- 466 ++ R + PE P + RD +D + G RDN S Sbjct: 429 KMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSRSADSRDGGER 488 Query: 467 ------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV- 513 + + VG E R ++ + I+ + IG I++ + +E+ Sbjct: 489 PARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 548 Query: 514 ---SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 + + RT L+K + ++ LG +P R Sbjct: 549 KGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 582 >gi|17555296|ref|NP_499069.1| hypothetical protein T26G10.1 [Caenorhabditis elegans] gi|465975|sp|P34580|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1 gi|3880293|emb|CAA82362.1| C. elegans protein T26G10.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 489 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 204/345 (59%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + +A G++ + +Q+A L L+ KDV+ A+TGSGKT AF + + +LL Sbjct: 51 VSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP 110 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F L + PTRELA Q+G++ E L + G++ AV +GGV + + L H Sbjct: 111 QAF------FCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 164 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+ KG N+ LK +++DEAD +L++ F +++ IL P++RR +F Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLF 224 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ ++ L + +D RV+++S + ++ + V ++ +V +L H Sbjct: 225 SATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGN 284 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AIVFC+T A+ + +L + Q V L G++SQ++R +L + + + TDVAA Sbjct: 285 SAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAA 344 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++VI+ ++ S ++ +HR GRT RAGR G+++ V+ Q Sbjct: 345 RGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQ 389 >gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus 1_2_62CV] gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus 1_2_62CV] Length = 565 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 129/337 (38%), Positives = 197/337 (58%), Gaps = 11/337 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-- 76 G+V + +QE + + KDV+ AQTG+GKT AFG + EN P+ Sbjct: 67 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKINTEN--------PIVQ 118 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 AL IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL Sbjct: 119 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLL 178 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 D I+ K L ++H++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 179 DLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRI 238 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ Sbjct: 239 GMKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRR 298 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 V T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V Sbjct: 299 VDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHV 358 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 359 YNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 395 >gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1] Length = 564 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 163/521 (31%), Positives = 261/521 (50%), Gaps = 29/521 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ +A+++ GY + +Q A + L DV+ AQTG+GKT AF + + S + ++ Sbjct: 22 PAVL-QAVADVGYETPSPIQAATIPAILDGSDVVGLAQTGTGKTAAFAIPILSKIDTDSR 80 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AL +APTRELA+QV A V V GG S + L+ GA + Sbjct: 81 NTQ------ALVLAPTRELALQVAEAFGRYGAHLRVNVLPIYGGASYVPQLSGLKRGAQV 134 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DH+ L++SHL +VLDEADEML +GF +D+E IL +P+ +++ +FSA Sbjct: 135 VVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVALFSA 194 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ PAI + Y D V V + S+ + +I R LV+ + +A+ +L Sbjct: 195 TMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLEVEQGDAM 254 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF T+ + + L F A++G++ Q R + ++DG + +ATDVAARG Sbjct: 255 IVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDILVATDVAARG 314 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREAN 364 +D+ + V++ ++ +PE+ +HR GRTGRAGR G + +FV P +++ ER+ R+ Sbjct: 315 LDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQ-- 372 Query: 365 VSVVWEPAPSVEAIRERDAQRI-------LQDP---LFLDSIQGDEKKMVDVLLAKHDPE 414 +V PSVE + E+ + L+ P LF I+G E+ DV +A Sbjct: 373 -KLVESELPSVEDVNEKRVAKFRDSITDALEKPGIDLFRTLIEGYERDH-DVPMA----- 425 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474 IAA R G P R + R+ + + ++VG Sbjct: 426 DIAAALALQSRNGEEFLMTEPPPEKRRERRERDGRDGDDRGPRKPRERRSDLATYRIAVG 485 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + K ++ + G++R G I ++ D + VE+ A Sbjct: 486 KRHKVAPGAIVGAIANEGGLHRSDFGHITIKVDYSLVELPA 526 >gi|28897062|ref|NP_796667.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD 2210633] gi|153837936|ref|ZP_01990603.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810] gi|260363937|ref|ZP_05776676.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030] gi|260877980|ref|ZP_05890335.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034] gi|260896348|ref|ZP_05904844.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus Peru-466] gi|260900676|ref|ZP_05909071.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037] gi|28805270|dbj|BAC58551.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD 2210633] gi|149748714|gb|EDM59565.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810] gi|308085198|gb|EFO34893.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus Peru-466] gi|308090073|gb|EFO39768.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034] gi|308110247|gb|EFO47787.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037] gi|308112560|gb|EFO50100.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030] gi|328471865|gb|EGF42742.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329] Length = 459 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 137/393 (34%), Positives = 213/393 (54%), Gaps = 13/393 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L Y ++T +Q L L ++DV+ +TGSGKT AFGL + S L + R Sbjct: 17 ETLDSLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +E+ L + V GG+ + + L++GAHI+VGT Sbjct: 75 ----ALVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ +N+ L +VLDEAD ML++GF+D ++ I++++PK+R+ L+FSAT Sbjct: 131 PGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIINAAPKQRQTLLFSATFPE 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ K + + S + S Y + RD A+ N+L + ++A+VFC Sbjct: 191 KIEKIAQRIMKSPEMIKVESTHDTSSIAQYFYKVEGTEARDEALANLLLTYQPESAVVFC 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V L F V+ + G+L Q+ER AL + + +ATDVAARG+D+ Sbjct: 251 NTKKEVQNVADELHHRGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVD 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +L+ V + ELS +PE +HR GRTGRAG KG++ + R R+ + VV Sbjct: 311 NLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPAT 370 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 P+ + Q+ Q + +I G +K+ V Sbjct: 371 LPA------KSNQQPYQAKMVTINIDGGKKQKV 397 >gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9) [Streptococcus sp. C300] gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9) [Streptococcus sp. C300] Length = 449 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + KD V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 648 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 142/406 (34%), Positives = 227/406 (55%), Gaps = 15/406 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 38 KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 95 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 96 ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 151 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P++R++ +FSAT+ P Sbjct: 152 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPP 211 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 212 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 271 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A+ + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 272 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 331 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 332 RISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 391 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +++ G + M LL +++ E Sbjct: 392 L---PSVDAVNDTRVVRFMTR--ITETLAGGQIDMYRDLLQRYEAE 432 >gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14] gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192] gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1] gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016] gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14] gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192] gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016] Length = 458 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 136/356 (38%), Positives = 198/356 (55%), Gaps = 8/356 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFGLAL S L N R+ A Sbjct: 19 LDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPL---NPRYFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A + V GGV + L++GAH+VVGTPG Sbjct: 76 ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + L +VLDEAD MLD+GF D I I+ P++R+ L+FSAT I Sbjct: 133 RIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK + +D +V + S + S I+ R + R +A+V +L++ ++ + FC T Sbjct: 193 EKLAKTFMRDPRQVKVESLH-ADSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSCVAFCQT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R L +AL G+L Q+ER L + + V +ATDVAARG+D+ L Sbjct: 252 RQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAAL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 E VI+ EL+ +PE +HR GR+GRAG KG+++ ++ RA+ + + W Sbjct: 312 ETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQPLAW 367 >gi|91228572|ref|ZP_01262491.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01] gi|269964706|ref|ZP_06178944.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|91187851|gb|EAS74164.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01] gi|269830605|gb|EEZ84826.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 459 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 137/392 (34%), Positives = 213/392 (54%), Gaps = 13/392 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L Y ++T +Q L L+ +DV+ +TGSGKT AFGL + S L + R Sbjct: 18 TLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ--- 74 Query: 74 APLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QV +E+ L + V GG+ + + L++GAHI+VGTP Sbjct: 75 ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ +++S L +VLDEAD MLD+GF+D ++ I+D++PK+R+ L+FSAT Sbjct: 132 GRILDHLEKGRIDLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTLLFSATFPEK 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + S + S Y + RD A+ N+L H ++A+VFC+ Sbjct: 192 IEQIAQRIMQTPEVIKVESTHDTSSIAQYFYKVEGSEARDEALANLLLTHQPESAVVFCN 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V L F V+ + G+L Q+ER AL + + +ATDVAARG+D+ + Sbjct: 252 TKKEVQSVADELHHKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDN 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+ V + ELS +PE +HR GRTGRAG KG++ + R R+ + VV Sbjct: 312 LDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPATL 371 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 P+ + Q+ Q + +I G +K+ V Sbjct: 372 PA------KSNQQPYQAKMVTINIDGGKKQKV 397 >gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118] gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118] Length = 537 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 141/406 (34%), Positives = 224/406 (55%), Gaps = 15/406 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S + Sbjct: 22 KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLHQVK---- 77 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 78 --PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P++R++ +FSAT+ P Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A+ + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 256 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 316 RISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +++ G + M LL +++ E Sbjct: 376 L---PSVDAVNDTRVARFMSR--ITETLAGGQIDMYRDLLQRYEAE 416 >gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM 266] Length = 589 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 168/523 (32%), Positives = 263/523 (50%), Gaps = 42/523 (8%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL E GY N T +Q + L +D+L AQTG+GKT AF L + S + Sbjct: 22 KALEEVGYENPTPIQAQTIPLLLEGRDLLGQAQTGTGKTAAFALPILSNITIAR------ 75 Query: 73 SAPLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P AL +APTRELA+QV R E+L G V GG + R L+ G H+V Sbjct: 76 REPQALVLAPTRELAIQVAEAFHRYAEYL---KGFHVLPIYGGQDYGIQLRMLKQGVHVV 132 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+R LN+ L+ +VLDEADEML +GF DD+E+ILD +PK R++ +FSAT Sbjct: 133 VGTPGRVMDHMRRGSLNLDGLQCLVLDEADEMLRMGFIDDVEWILDQTPKGRQVALFSAT 192 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I +A+ Y + + I ++ I R +V S + + + IL + Sbjct: 193 LPVPIRRIAQKYLNNPAEITIQNKTTTVEAIRQRYWIVGGSHKLDVLTRILEVEPFDGIL 252 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + L + AL+G+++Q R ++ ++ G + IATDVAARG+ Sbjct: 253 IFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALNIVIATDVAARGL 312 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANV 365 D+ + VI+ ++ S+ E+ +HR GRTGRAGR G ++ FV P +NM E+ R+ Sbjct: 313 DVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAIEKATRK--- 369 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD-PEKIAAGF 420 + PS E I + + Q D+I E ++++ +HD PE AA Sbjct: 370 RIELMELPSTEIINNKRISKFKQR--ITDTIAAGELDFYSRLIEQYCHEHDVPELDAAAA 427 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDS---RAFKVGGGSRDNFKGSSW-------FS 470 L G TP+ L + +R RD R+ G ++ KG + + Sbjct: 428 LASLLQGE------TPLLLSAKPERTRDHDDRPRSQSDSGFAKKRKKGEMYGDEGRQRYR 481 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + VGS +A ++ + G++ +++G I + + VE+ Sbjct: 482 IEVGSTHGVKAGNILGAIINEIGLDPEAVGQISISDTYSSVEL 524 >gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 515] gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus agalactiae 515] Length = 528 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 205/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + E++ AL IAPTRELAVQ EL GV V GG S+ ++ + Sbjct: 61 NKIHTEDNTIQ------ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + K+ V I + + ++D V V +++ + + ++ Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKNPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|148973902|ref|ZP_01811435.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3] gi|145965599|gb|EDK30847.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3] Length = 459 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 131/352 (37%), Positives = 205/352 (58%), Gaps = 9/352 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L GY +T +Q L L KDV+ +TGSGKT AFGL + L + Sbjct: 13 PELL-HTLDSLGYTEMTPIQALSLPTILNGKDVIGQGKTGSGKTAAFGLGVLQNLRVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R +L + PTRELA QV +E+ L + V GG+ + + L++GAH Sbjct: 72 RVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ +++S L +VLDEAD ML++GF+D ++ ++D++PK+R+ L+FS Sbjct: 126 ILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLEMGFQDALDAVIDAAPKERQTLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I ++A ++ V + S + S + L RD+A+ +L +H ++ Sbjct: 186 ATFPKQIKSVADRIMRNPEMVKVESTHDHSSIQQHFYKLEGSEARDDALELLLLHHQPES 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VFC+T+ V T L+ F V+ L G++ Q+ER AL + + +ATDVAAR Sbjct: 246 AVVFCNTKKEVQNVTDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357 G+D+ +L+ V + ELS +PE +HR GRTGRAG KG+++ F + M R A+ Sbjct: 306 GLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMYRVAQ 357 >gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58] gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58] Length = 458 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 136/356 (38%), Positives = 199/356 (55%), Gaps = 8/356 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFGLAL S L N R+ A Sbjct: 19 LDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPL---NPRYFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A + V GGV + L++GAH+VVGTPG Sbjct: 76 ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + L +VLDEAD MLD+GF D I I+ P++R+ L+FSAT I Sbjct: 133 RIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK + +D +V + S + S I+ R + R +A+V +L++ ++++ FC T Sbjct: 193 EKLAKTFMRDPRQVRVESLH-ADSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSSVAFCQT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R L +AL G+L Q+ER L + + V +ATDVAARG+D+ L Sbjct: 252 RQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAAL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 E VI+ EL+ +PE +HR GR+GRAG KG+++ ++ RA+ + + W Sbjct: 312 ETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQPLAW 367 >gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa E681] gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa E681] Length = 529 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 156/473 (32%), Positives = 257/473 (54%), Gaps = 26/473 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+VI +A++E G+ T +Q + L+ +D++ AQTG+GKT AFG+ L + + Sbjct: 7 FDLEPKVI-QAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLINKIS 65 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +++ AL +APTRELA+QV E+E L G+ GG + R+ R L+ Sbjct: 66 RSDEKIR------ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKK 119 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 I++GTPGRL DHI K + + + VVLDEADEMLD+GF +DI+ IL P +R+ + Sbjct: 120 KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTM 179 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LA+ + K+ V++ + ID + V + A+ ++ Sbjct: 180 LFSATMPANIKRLAEQFLKNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLIDMES 239 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVF T+ V + L + + L G+LSQ +R ++ RDG V +ATDV Sbjct: 240 PELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDV 299 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRR--AERLF 360 AARG+D+ + V++ +L +PE+ +HR GRTGRAG++G + FV P+ + ER+ Sbjct: 300 AARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIERVT 359 Query: 361 REANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415 R + +P P++ EA+ + QRI+ + L L++++ E K + +L ++D + Sbjct: 360 RH---RIPRKPLPTLAEALEGK--QRIIAERL-LEAVESGELNEYKGLAIQMLEQYDSVQ 413 Query: 416 IAAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 + + L++ A E+TP + + R D + GG N+ G S Sbjct: 414 LLSAALKLMTGEKREASIELTPEDPIRAKRRKPD----VRSGGRKPSNYSGRS 462 >gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis KT71] gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis KT71] Length = 604 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 211/383 (55%), Gaps = 9/383 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +ALS+ GY +++Q + P L KD++ AQTG+GKT AF L + + L A+ Sbjct: 14 QLPVFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILARLDAK 73 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 + P AL +APTRELA+QV + YA+ G V GG + R LQ Sbjct: 74 ------LAKPQALVLAPTRELAIQVAEAFQK-YARHSKGFKVLPIYGGSDYRTQLRQLQR 126 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G H++VGTPGR+ DH+R L++S LK +VLDEADEML +GF DD+E+IL+ +P +R++ Sbjct: 127 GVHVIVGTPGRVMDHMRRGSLDLSALKTLVLDEADEMLRMGFIDDVEWILEQTPPERQIA 186 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI +A+ + + I + ++ I R ++ + +A+ IL Sbjct: 187 LFSATMPDAIRRIAQQHLSKPEEITIKLKTVTNASIRQRVWMMGGMHKLDALTRILETED 246 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F TR + LA + AL+G++ Q R ++ ++ G + +ATDV Sbjct: 247 TDGIIIFVRTRIATQELADKLAARGYGTAALNGDIPQNLREKTVENLKKGALDILVATDV 306 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ + VI+ ++ ++PE +HR GRTGRAGR G ++ +R + R Sbjct: 307 AARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTIERVT 366 Query: 364 NVSVVWEPAPSVEAIRERDAQRI 386 + P+ E + ++ A R Sbjct: 367 GQKIESMELPTSEQVSDKRAARF 389 >gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 572 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 139/419 (33%), Positives = 227/419 (54%), Gaps = 17/419 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E G+ + +Q + + +D++ AQTG+GKT AFG+ L + P Sbjct: 18 AITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLLQ-------KVDPKV 70 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L A+ + PTRELA+QV E+ L AK G V GG + ++ R L++G IVVG Sbjct: 71 KKLQAIILLPTRELAIQVAEEMRRL-AKFMHGTKVLPIYGGQDIVKQIRSLKDGTQIVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R K + + H+ VVLDEADEML++GF +D+E IL P++R+ LMFSAT+ Sbjct: 130 TPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSATMP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI +A+ +Q D V V + + + V ++ + +L + K +IVF Sbjct: 190 QAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAPKLSIVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V + L + L G+L Q +R + R+GR + +ATDVAARGID+ Sbjct: 250 CNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVAARGIDV 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D+E V + ++ + E +HR GRTGRAGR+G + ++ + + R ++ + Sbjct: 310 GDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCKTKIIPQ 369 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIAAGFLRIH 424 PS+ I E +++L + + + D KMV+++ K + +AA L+++ Sbjct: 370 AIPSLNDITEIKVEKVLDQVMDILN-DNDLTKMVNIIEKKLIEEDYTSMDLAAALLKMN 427 >gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 586 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 175/569 (30%), Positives = 280/569 (49%), Gaps = 50/569 (8%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + GY +++Q A + L +DVL AQTG+GKT AF L + S L Sbjct: 31 KALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSNLDVSQ------ 84 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV E + GV V GG + L+ G H+VVGT Sbjct: 85 KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRRGVHVVVGT 144 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF +D+E IL +PK +++ +FSAT+ Sbjct: 145 PGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIALFSATMPA 204 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Y +D + + ++ ++ R ++V+ + +A+ IL + IVF Sbjct: 205 QIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDALTRILETENFEGMIVFV 264 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + A+SG+++Q +R ++ +++G+ + +ATDVAARG+D+ Sbjct: 265 RTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDVAARGLDVD 324 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P+ +RR +A + E Sbjct: 325 RISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPR--ERRLLTAIEKATRQPLTE 382 Query: 371 P-APSVEAIRERDAQRI-------LQDPLFLDSIQGDEKKMVDVLLAKHD-PEKIAAGFL 421 PS E + R L D LD+ + +V + HD E A L Sbjct: 383 MRMPSAEDVNVTRLSRFDDAITAALADRERLDAF----RDIVGHYVNHHDVVESDVAAAL 438 Query: 422 RIHRAG----LCAPEEITPVSLVS-------GRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 I G L + +++ P + GRD R + GS + + Sbjct: 439 AIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDERGERRARPARGS----GNMATYR 494 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTV- 525 + VG + + E R ++ L G +R+ G I ++PD + VE+ A D +D L TV Sbjct: 495 IDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAGLPQDRIDRLASTVI 554 Query: 526 -------KLDKGIQLKYLGGEKPDFRGYK 547 + D+G G P+ RG K Sbjct: 555 NGRPIDIRPDRGGPRAAERGAAPERRGRK 583 >gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786] Length = 411 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 207/358 (57%), Gaps = 5/358 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++++GY T +Q + L +DV+ +AQTG+GKT +F L + LL + + Sbjct: 22 ILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G ++ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEVL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N +++ VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVAEGDKQAAVVKLIRDRALKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFREA 363 D+ +L VI+ +L + E+ +HR GRTGRAG G ++ + N +++ E+L + A Sbjct: 322 DIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRA 379 >gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC 51100] gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC 51100] Length = 524 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 197/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++H++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNHIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1] gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2] gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719] gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1] gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719] Length = 458 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 136/356 (38%), Positives = 198/356 (55%), Gaps = 8/356 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFGLAL S L N R+ A Sbjct: 19 LDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPL---NPRYFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A + V GGV + L++GAH+VVGTPG Sbjct: 76 ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + L +VLDEAD MLD+GF D I I+ P++R+ L+FSAT I Sbjct: 133 RIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK + +D +V + S + S I+ R + R +A+V +L++ ++ + FC T Sbjct: 193 EKLAKTFMRDPRQVRVESLH-ADSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSCVAFCQT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R L +AL G+L Q+ER L + + V +ATDVAARG+D+ L Sbjct: 252 RQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAAL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 E VI+ EL+ +PE +HR GR+GRAG KG+++ ++ RA+ + + W Sbjct: 312 ETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQPLAW 367 >gi|256830240|ref|YP_003158968.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579416|gb|ACU90552.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum DSM 4028] Length = 530 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 164/532 (30%), Positives = 255/532 (47%), Gaps = 39/532 (7%) Query: 13 EALSERGYVNLTSVQ----EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 +ALS +G+ T +Q A+L D D++ AQTG+GKT AFGL L L + Sbjct: 15 QALSRKGFEEPTPIQIKTIPAVLTGD---SDIVAQAQTGTGKTAAFGLPLLEMLDPD--- 68 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL +APTRELA+QV E+ L + VA GG S+ + R L+ G +V Sbjct: 69 ---VRTVQALVLAPTRELAIQVAEEVNSLRGGRTINVAPIYGGQSMEIQLRSLKKGVSVV 125 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+R LN+S ++ ++LDEADEML++GF DD+ I++ + ++R ++FSAT Sbjct: 126 VGTPGRVLDHLRRGSLNLSGIRFLILDEADEMLNMGFLDDVLEIMEQTATEKRTMLFSAT 185 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P I +AK Y D + SE + D VA+SD+ A+ I+ + Sbjct: 186 MPPEILRIAKKYMGDYQIIKAVSEQLTATQTDQIYFEVAMSDKFEALCRIIDMEPDFYGL 245 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ L E ++ L G++SQ R L + + +ATDVAARGI Sbjct: 246 VFTRTKIDADAVSQRLMERGYEADTLHGDMSQSLREKMLIKFKKKLVTILVATDVAARGI 305 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ DL VI+ +L +PE +HR GRTGRAG++G+++ I + RR + + + A + Sbjct: 306 DVHDLTHVINFDLPHDPEAYVHRIGRTGRAGKQGIAITFITPSEYRRLQFISKHARTDIR 365 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIAAGFLRI 423 P V + + RI + L I E + M LL + P + A L+ Sbjct: 366 KARLPKVADVIDMKKGRIRAE---LQEIMTTEPELEFMGMAQELLDQSKPRETLAALLQ- 421 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 EE+ D S ++G + G S ++ G K + Sbjct: 422 ----YMFQEEL-------------DASNYKEIGDAFVVDKTGKSRLFVTQGRKDGLTPKR 464 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535 L+ L I + I I++ FV + + + KG +L + Sbjct: 465 LLTFLGDKCNIPPKKIWDIQIMETFAFVSLPFQDAERVLAMFNKGKGTELAF 516 >gi|56478694|ref|YP_160283.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1] gi|56314737|emb|CAI09382.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1] Length = 658 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 182/566 (32%), Positives = 276/566 (48%), Gaps = 63/566 (11%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71 +ALSE GY + +Q + L D+L AQTG+GKT AF L L L LA + Sbjct: 57 DALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLDRLDLAVKN---- 112 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L +APTRELA+QV + YAK G V GG S+ + R L GAH++V Sbjct: 113 ---PQVLVLAPTRELAIQVAEAFQR-YAKNLPGFHVLPVYGGQSMVVQLRQLARGAHVIV 168 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DHI K LN+ L +VLDEADEML +GF DD+E+IL +P +R+ +FSAT+ Sbjct: 169 GTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTALFSATM 228 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AI 248 AI +A Y ++ V I + S R ++++ + +A+ IL + AI Sbjct: 229 PDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRILEVEEDFDAAI 288 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + L + AL+G+++QQ R ++ ++ G+ + +ATDVAARG+ Sbjct: 289 IFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVVATDVAARGL 348 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANV 365 D+ + VI+ ++ + E +HR GRTGRAGR G ++ FV P+ M+ + ER R+ Sbjct: 349 DVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKVIERATRQPIE 408 Query: 366 SVVWEPAPSVEAIRERDAQRILQD----------PLFLDSIQGDEKKMVDVLLAKHDPEK 415 ++ PS EA+ ++ Q F D + G E L HD Sbjct: 409 ALQL---PSREAVADKRVAAFRQQVATVLESEDLAFFRDVVAGMESTHEAEL---HD--- 459 Query: 416 IAA--GFLRIHRAGLCAPEEITP---------------VSLVSGRDRFRDDSRAFKVGGG 458 IAA FL L PE P + RD+ + R F G Sbjct: 460 IAAALAFLAQRERPLQLPESKGPDIARLPEPRREPGAERAPRENRDKILERRREFSEGNL 519 Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA--- 515 R + + VG Q+A + ++ + +GI + IG I + D + VE+ + Sbjct: 520 QR--------YRIEVGRNQQATPKDIVGAIANEAGIESRYIGQINLYEDYSTVELPSALP 571 Query: 516 -DGVDLLRRTVKLDKGIQLKYLGGEK 540 D +D+LRR + ++ L E+ Sbjct: 572 HDVLDILRRVRVRQHQLNIRPLDAEE 597 >gi|162447297|ref|YP_001620429.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A] gi|161985404|gb|ABX81053.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A] Length = 547 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 160/541 (29%), Positives = 277/541 (51%), Gaps = 44/541 (8%) Query: 3 IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +F ++P AL + G+ T +QE + + D++ AQTG+GKT AFG+ + Sbjct: 4 LFNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPM-- 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119 + + D + L + PTREL QV +E+ + + + V +GG S ++ + Sbjct: 62 --VEKTD--TSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFK 117 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L HI+V TPGR+ DHI +++SH+ + LDEADEML +GF+DDIE IL ++P+ Sbjct: 118 ELDRKPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPET 177 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ ++FSAT+ I +AKNYQK+ + I +++ I LV ++ + + +L Sbjct: 178 RQTVLFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLL 237 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + AI+F +T+A R T+ L + F AL G+L Q +R+ + R + + + Sbjct: 238 DFENPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILV 297 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAER 358 ATDVAARG+D+ D+E++++ +L E +HR GRTGRAG+KG + FV P ++RR Sbjct: 298 ATDVAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTP--LKRRMLD 355 Query: 359 L---FREANVSVVWEPA------PSVEAIRERDAQRILQD-PLFLDSI------QGDEKK 402 + + +A++ + P ++ + + + + P L++I +G + + Sbjct: 356 MLAHYTKADIKRLEVPTADDVYKEQLKTFKHKIKTELANEYPNHLEAIKELLVDEGSKDQ 415 Query: 403 MVDVLLAKHDPEKIAAGFLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460 +++ LL P K + I +A + +E G D+ R DSR+ + +R Sbjct: 416 LLNYLLDSMLPTKKTYETIEIIPEKASRRSQDE-------RGNDKGRKDSRSSRDASPAR 468 Query: 461 DNFKGSSW---FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517 GS F+L++G L + + GI ++IG IR + T + D Sbjct: 469 ----GSGQYVDFTLNIGKADGLTPPTLFKFMEKEYGIFSKNIGDIRHHKNETVFGLRKDS 524 Query: 518 V 518 V Sbjct: 525 V 525 >gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2] gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2] Length = 535 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 142/398 (35%), Positives = 224/398 (56%), Gaps = 20/398 (5%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 MK F P+V+ +A++E G+ T +Q+ + + D++ AQTG+GKT AFG+ Sbjct: 1 MKTFAEFGLEPKVL-QAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIP 59 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L + + +R +AL + PTRELA+QV E+ L G+ GG + R+ Sbjct: 60 LINKISINEERI------VALIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQ 113 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R L+ I++GTPGRL DHI K + + ++ VVLDEADEMLD+GF +DI+ IL P Sbjct: 114 IRALKKKPQIIIGTPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVP 173 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 ++R+ L+FSAT+ P I LA+ + K+ V + S+ I V + A+ Sbjct: 174 EERQTLLFSATMPPNIQKLAQQFLKNPEHVAVISKQVTAPTIQQNYFEVHERQKFEALCR 233 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L + AI+F T+ V ++ L + + L G+LSQ +R N ++ RDG V Sbjct: 234 LLDMESPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDV 293 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR- 355 +ATDVAARG+D+ + VI+ +L +PE+ +HR GRTGRAG++G + FV P+ + Sbjct: 294 LVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAYSFVTPREVDHLH 353 Query: 356 -AERLFREANVSVVWEPAPSV-EAIRERD---AQRILQ 388 E++ R+ + +P PS+ EAI + A+R+L+ Sbjct: 354 FIEKVTRQ---RISKKPLPSLAEAIEGKQRLTAERVLE 388 >gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii ATCC 33806] gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii ATCC 33806] Length = 715 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 214/376 (56%), Gaps = 8/376 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + +A+ G+ + +Q + L DVL AQTG+GKT AF L + S + AE Sbjct: 86 LPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSLIDAE- 144 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 P AL +APTRELA+QV + + + V GG + + L+ G Sbjct: 145 -----IRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRRG 199 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A IVVGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL +P+++++ + Sbjct: 200 AQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEEKQVAL 259 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I L+K Y D + + SE R +++I R + VA ++ +A+ IL Sbjct: 260 FSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEF 319 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F T+ + L F A++G+++QQ+R ++ ++DGR + +ATDVA Sbjct: 320 EAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILVATDVA 379 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ + V++ ++ S+ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 380 ARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNIERATN 439 Query: 365 VSVVWEPAPSVEAIRE 380 + P+V+ + E Sbjct: 440 APLQEMELPTVDEVNE 455 >gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9] gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9] Length = 457 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 200/355 (56%), Gaps = 5/355 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAE 65 +P + A+ E GY T +Q + L +DVL +AQTG+GKT AF L + + L Sbjct: 9 LPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPIIARLRHYA 68 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 SPA P+ L + PTRELA Q+ ++ Y K + C+ GGV++ ++ DL Sbjct: 69 THSVSPAMHPVRCLILTPTRELADQIAASVQS-YTKYLPLRHTCVFGGVNMDPQKADLMR 127 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV TPGRL DH+ K + ++ ++ +VLDEAD MLD+GF DI IL PK R+ L Sbjct: 128 GMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADRMLDMGFILDIRRILAQLPKTRQTL 187 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT SP I LA +Q+D V + +A +N + ++ V + + ++ Sbjct: 188 LFSATFSPEIKKLAAEFQRDPVTIEVARQNTTAATVEQAVYAVDAGQKRRLLARLINERA 247 Query: 244 AKNAIVFCSTRASVSRFTKVLAEH-LFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVFC T+ R + L A+ G+ +QQ R + L +DG+ R+ +ATD Sbjct: 248 MSQVIVFCRTKQGADRLARELRNFDRLDAEAIHGDKAQQARLDTLAAFKDGKLRILVATD 307 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 VAARG+D+ DL V++ +L ++PE+ +HR GRTGRAG+ G+++ ++ Q+ E Sbjct: 308 VAARGLDVSDLPFVVNFDLPNSPEDYVHRIGRTGRAGQSGVAISLMDAEEQKLLE 362 >gi|262392485|ref|YP_003284339.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25] gi|262336079|gb|ACY49874.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25] Length = 459 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 137/392 (34%), Positives = 213/392 (54%), Gaps = 13/392 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L Y ++T +Q L L+ +DV+ +TGSGKT AFGL + S L + R Sbjct: 18 TLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ--- 74 Query: 74 APLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QV +E+ L + V GG+ + + L++GAHI+VGTP Sbjct: 75 ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ +N+S L +VLDEAD MLD+GF+D ++ I+D++PK+R+ L+FSAT Sbjct: 132 GRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTLLFSATFPEK 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + S + S + + RD A+ N+L H ++A+VFC+ Sbjct: 192 IEQIAQRIMQTPEVIKVESTHDTSSIAQHFYKVEGSEARDEALANLLLTHQPESAVVFCN 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V L F V+ + G+L Q+ER AL + + +ATDVAARG+D+ + Sbjct: 252 TKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDN 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+ V + ELS +PE +HR GRTGRAG KG++ + R R+ + VV Sbjct: 312 LDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPATL 371 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 P+ + Q+ Q + +I G +K+ V Sbjct: 372 PA------KSNQQPYQAKMVTINIDGGKKQKV 397 >gi|325266846|ref|ZP_08133517.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394] gi|324981587|gb|EGC17228.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394] Length = 452 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 129/346 (37%), Positives = 203/346 (58%), Gaps = 2/346 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69 I AL E+GY T +QEA + L D+L +AQTG+GKT AF L +L N Sbjct: 13 IVAALEEQGYQQPTPIQEAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYANASA 72 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ L + PTRELA Q+ + + + V GGV++ ++ L++G IV Sbjct: 73 SPAMHPVRMLVLTPTRELADQIDQNTQRYIKNLPLRHTVLFGGVNMDKQTAQLRSGCEIV 132 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V T GRL DH++ K + ++ ++ VVLDEAD MLD+GF DDI I+ P+ R+ L+FSAT Sbjct: 133 VATVGRLLDHVKQKNIVLNKVEIVVLDEADRMLDMGFIDDIRNIMQMLPRPRQTLLFSAT 192 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 +PAI LA+++ V +A++N +++++ + V + + + ++ G + I Sbjct: 193 FAPAIRKLAQDFMHSPEVVEVAAQNTTNANVEQHVIAVDTHRKRDLLERLIVDLGMQQVI 252 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ S + + LA V A+ G+ SQQ R + L + G RV +ATDVAARG+ Sbjct: 253 VFCKTKQSADQVARDLARRGLSVSAIHGDKSQQTRLDVLSQFKAGSLRVLVATDVAARGL 312 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 D+ +L V++ E+ E+ +HR GRTGRAG G+++ ++ ++ Q+ Sbjct: 313 DIAELPFVVNYEMPVQAEDYVHRIGRTGRAGADGVAISMMDESEQK 358 >gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC 49030] gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC 49030] Length = 586 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 184/584 (31%), Positives = 291/584 (49%), Gaps = 52/584 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + A+++ GY + + +Q + L+ +DV+ AQTG+GKT AF L L S++ R Sbjct: 25 VARAVADLGYESPSPIQAKTIPFLLQGRDVIGLAQTGTGKTAAFALPLLSSIAG---RER 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129 P S PLAL +APTRELA+QV L G + I GG S + L+ GAH+VV Sbjct: 82 PTS-PLALILAPTRELAIQVAEALTSYATHLGDFSVLPIYGGQSYTPQISGLKRGAHVVV 140 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DHI+ L++SH++ +VLDEADEML +GF++DIE I + R++ +FSAT+ Sbjct: 141 GTPGRVIDHIKRGTLDLSHVEHLVLDEADEMLKMGFQEDIEEIFAKTNPDRQVALFSATM 200 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 +I + Y D V I ++ ++I R + V S + +A+ IL I+ Sbjct: 201 PASIHRITGQYLNDPAEVRIQAKTTTSANIRQRYLTVMHSHKLDALTRILEVEKYDGIIM 260 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ L F A++G++ Q R ++ +R G + +ATDVAARG+D Sbjct: 261 FVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILVATDVAARGLD 320 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR--EANVS 366 + + LV++ ++ + E+ +HR GRTGRAGR G ++ FV P R RL + E Sbjct: 321 VERISLVVNFDIPHDTESYVHRIGRTGRAGRTGEAILFVTP-----RENRLLKAIEKATR 375 Query: 367 VVWEP--APSVEAIRERDAQRILQDPL--FLDSIQGDE-KKMVDVLLAKHD--PEKIAAG 419 EP P+VE + Q+ QD + L+S E + +++ + H+ E +AA Sbjct: 376 QKVEPLVMPTVEELTVTRTQK-FQDRISHTLNSQDLSELRPVIEEYVNTHNVPAEDVAAA 434 Query: 420 F--LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 L + A L A P + S +R R G + + L+VG Sbjct: 435 LASLVLDGATLTAEPLPEPQARASRNERAR--------------TADGMTTYRLAVGRMD 480 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDLLRRTVKLDKGIQLKYL 536 K ++ + GI+ Q IG I ++ + + V++ D +L+R K K Sbjct: 481 KVNPGAIVGAIANEGGISSQQIGNISIRSNHSLVDLPQDLDASVLKRLSK------TKVA 534 Query: 537 GGE---KPDFRGYKSSGFKSKNSQDGA--TKRFKR--FKGASKN 573 G +PD RG FK +++ GA ++F + F+G N Sbjct: 535 GRHIDIRPD-RGRPGRPFKKRSNDKGAGEGRKFGKDGFRGRKGN 577 >gi|254230057|ref|ZP_04923456.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] gi|151937445|gb|EDN56304.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] Length = 471 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 137/392 (34%), Positives = 213/392 (54%), Gaps = 13/392 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L Y ++T +Q L L+ +DV+ +TGSGKT AFGL + S L + R Sbjct: 30 TLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ--- 86 Query: 74 APLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QV +E+ L + V GG+ + + L++GAHI+VGTP Sbjct: 87 ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTP 143 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ +N+S L +VLDEAD MLD+GF+D ++ I+D++PK+R+ L+FSAT Sbjct: 144 GRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTLLFSATFPEK 203 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + S + S + + RD A+ N+L H ++A+VFC+ Sbjct: 204 IEQIAQRIMQTPEVIKVESTHDTSSIAQHFYKVEGSEARDEALANLLLTHQPESAVVFCN 263 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V L F V+ + G+L Q+ER AL + + +ATDVAARG+D+ + Sbjct: 264 TKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDN 323 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+ V + ELS +PE +HR GRTGRAG KG++ + R R+ + VV Sbjct: 324 LDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPATL 383 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 P+ + Q+ Q + +I G +K+ V Sbjct: 384 PA------KSNQQPYQAKMVTINIDGGKKQKV 409 >gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens] gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens] Length = 589 Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 199/347 (57%), Gaps = 8/347 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N + +AL + ++ + +Q + L+ +D + AQTG+GKT AF L + L E Sbjct: 12 NFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPE 71 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 S AL +APTRELA+QV + E L + V +AV GG R+ + L++G Sbjct: 72 ------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHI L +++LK +LDEADEML +GF +D+E IL+ P+K++M + Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A Y D + I E I+ R + ++ + +A++ +L Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T++S ++L +H + +A+ G+++Q R + + G + +ATDVA Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 ARG+D+ + VI+ ++ + E +HR GRTGRAGR G+++ FV P+ Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPK 352 >gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens] Length = 638 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 174/571 (30%), Positives = 291/571 (50%), Gaps = 31/571 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + + I AL++RG +L +Q A+L P ++ +D++ A+TG+GKT+AFG+ + ++ + Sbjct: 33 VSEDIVNALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIQHIIDAH 92 Query: 67 DRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 +P +P AL +APTRELA QV RE ++ VC+ GGVS+ ++R L+ Sbjct: 93 KESAPRHGRSPRALVLAPTRELAKQVEREF---MESAPMLSTVCVYGGVSISMQQRQLER 149 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I VGTPGR+ D I L + ++ +VLDEAD+ML +GF +D+E IL PK R+ + Sbjct: 150 GVDIAVGTPGRIIDLIDRGSLKLQNVNFLVLDEADQMLAVGFEEDVERILQQLPKNRQSM 209 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT+ + L+ Y + +N+ ++++ I A+ + + + + + +++ Sbjct: 210 LFSATMPKWVKELSGKYLNRPLMINLVGDADDKLAEGITNLAIQLPATAKRSILSDLITV 269 Query: 242 HG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H IVF T+ + +L AL G++SQ +R L R+G V +A Sbjct: 270 HAKGGKTIVFTQTKRDADDVAMAMG-NLVACGALHGDISQLQREKTLNAFREGNITVLVA 328 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+P+++LVIH E+ ++ E +HR+GRTGRAG+ G ++ + N Q R R Sbjct: 329 TDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGKTGTNILMF-TNQQMRTMRTI 387 Query: 361 REANVSVVWE--PAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIA 417 E+NV ++ AP V+ + + ++ +D S+ + + + LL + P+ A Sbjct: 388 -ESNVKCRFQMIGAPHVKDVMQASFDQVRGALKNVDESLAAEFRPTAESLLEEKGPDAFA 446 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 A A L ++ P + + R + GG N +G S LS S+ Sbjct: 447 AAL-----AHLSGFSQLPPSRSLLTHEPGMTTLRLMRSGGRPALNARGVSGV-LSGLSRS 500 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQL 533 A++ + ++ +R+ GA+ PD EV A DG D+ KL I Sbjct: 501 AADSVGKICIID-----DRRVNGAVFDLPDDVAKEVLALPNQDG-DVFDVPTKLPPIISE 554 Query: 534 KYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564 + GG+ G G S+ D RF Sbjct: 555 ERRGGQSSGMFGRFGGGSDSRGGMDRGNDRF 585 >gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 589 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 199/347 (57%), Gaps = 8/347 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N + +AL + ++ + +Q + L+ +D + AQTG+GKT AF L + L E Sbjct: 12 NFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPE 71 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 S AL +APTRELA+QV + E L + V +AV GG R+ + L++G Sbjct: 72 ------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHI L +++LK +LDEADEML +GF +D+E IL+ P+K++M + Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A Y D + I E I+ R + ++ + +A++ +L Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T++S ++L +H + +A+ G+++Q R + + G + +ATDVA Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 ARG+D+ + VI+ ++ + E +HR GRTGRAGR G+++ FV P+ Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPK 352 >gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS] gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS] Length = 657 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 132/340 (38%), Positives = 195/340 (57%), Gaps = 10/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY N T +Q + + L +DVL AQTG+GKT AF L + S + A+ Sbjct: 41 ALEAVGYENPTPIQASTIPLLLEGRDVLGQAQTGTGKTAAFALPVLSNIDLS------AT 94 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV E YA+ G V GG + R+L+ G H+VVGT Sbjct: 95 DPQALVLAPTRELAIQVA-EAFHTYAEFMPGFHVLPIYGGQDYGVQIRNLKRGVHVVVGT 153 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R LN+ +LK +VLDEADEML +GF DD+E+ILD +P+ R++ +FSAT+ Sbjct: 154 PGRVMDHMRKGTLNLDNLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQVALFSATMPQ 213 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ Y K + I ++ I R +V + +A+ IL I+F Sbjct: 214 PIVRIARKYLKAPAEITIQTKTTTVETIRQRYWMVGGHHKLDALTRILEVEPFDGIIIFV 273 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + AL+G++ Q R ++ ++DG + IATDVAARG+D+ Sbjct: 274 RTKTETVALAEKLQARGYAAAALNGDMVQSARERTIEQLKDGTLNIVIATDVAARGLDVE 333 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + VI+ ++ ++ E+ +HR GRTGRAGR G ++ FV P+ Sbjct: 334 RISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPR 373 >gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 465 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 136/419 (32%), Positives = 224/419 (53%), Gaps = 13/419 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + +Q A + L +DV+ AQTG+GKT AFG+ L +R S Sbjct: 31 QAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV-------ERVSTE 83 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ + PTRELA+QV E+ + V GG S+ + R L+ G IV+GTP Sbjct: 84 PRVQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQGVQIVIGTP 143 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L++ ++ VVLDEADEMLD+GF DDIE IL +P R+ ++FSAT Sbjct: 144 GRVLDHIHRGTLSLGDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTMLFSATFPNE 203 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + LA Y +D + + ID V ++ +++ I+ + I+FC Sbjct: 204 VKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVDSEDIQLGIIFCR 263 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L + L G+LSQ +R ++ R + +ATDVAARG+D+ D Sbjct: 264 TKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARGLDVDD 323 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ +PE+ +HR GRTGRAG++G+++ ++ + +++ RE + Sbjct: 324 VTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKITVREV 383 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQ----GDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427 PS+E + ER A+ + +D I+ + ++ L+ +HDP IA+ L++ +G Sbjct: 384 PSLEDVAERQAE--MWRSKIVDVIREGGLAPYRAILSGLVDEHDPIDIASALLKLASSG 440 >gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147] Length = 408 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 207/358 (57%), Gaps = 5/358 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +A++++GY T +Q + L +DV+ +AQTG+GKT +F L + LL + + Sbjct: 22 ILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + +L+ G ++ Sbjct: 82 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEVL 141 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA Y ++ + +A N +++ VA D+ A+V ++R K I Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVAEGDKQAAVVKLIRDRALKQVI 261 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+++ SR + + A+ G+ SQ ER AL + G +ATDVAARG+ Sbjct: 262 VFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFREA 363 D+ +L VI+ +L + E+ +HR GRTGRAG G ++ + N +++ E+L + A Sbjct: 322 DIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRA 379 >gi|18310378|ref|NP_562312.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium perfringens str. 13] gi|110801126|ref|YP_696091.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC 13124] gi|110803627|ref|YP_698708.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101] gi|18145058|dbj|BAB81102.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13] gi|110675773|gb|ABG84760.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium perfringens ATCC 13124] gi|110684128|gb|ABG87498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium perfringens SM101] Length = 528 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 160/526 (30%), Positives = 267/526 (50%), Gaps = 35/526 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-P 71 +A+ + G+ + +Q + L D++ AQTG+GKT AFG A+ + N FS Sbjct: 17 KAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIIN-----NADFSGK 71 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +P AL +APTRELA+QV EL L + V GG + R+ R L+NG IVVGT Sbjct: 72 KKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRALKNGVDIVVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D IR K L ++ + +VLDEADEML++GF DD+E I+ S R+ L+FSAT+ P Sbjct: 132 PGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSATMPP 191 Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+NY K D + I + S I+ + DR + +L + AI+F Sbjct: 192 QIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDEPNAAIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V + + + V + G++SQ R L+ ++G +ATDVAARGID+ Sbjct: 252 CKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDVAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + VI+ +L + E+ +HR GRTGRA R+G++ ++ +++ + ++ + Sbjct: 312 ESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQKHTKSKIIRK 371 Query: 371 PAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLRIHRA 426 P+V+ I + I+ + ++ D +K + + L + +AA L+I Sbjct: 372 AVPTVDEIFQNKHNNIINNVKSTIEEASEDFQKFIPIATQLDEDYSLVDVAAALLKI--- 428 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 + E + S D++R F +SVG + + L+ Sbjct: 429 -VFDKESSFDYTSNSIEAPVMDETRLF-----------------MSVGRRDGITPKSLVN 470 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLRRTV--KLDK 529 L ++ I+ + +G I ++ + F V AD V +++++++ KL+K Sbjct: 471 FLKETARISPKQVGDIDIKENFCFANVDADAVNNIMKKSMGKKLNK 516 >gi|117919611|ref|YP_868803.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117611943|gb|ABK47397.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 409 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 124/337 (36%), Positives = 190/337 (56%), Gaps = 2/337 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY T +Q + L ++DV+ AQTG+GKT AF L + LL +N+ Sbjct: 16 LAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPILQQLLIDNESQDAPKD 75 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL + PTRELAVQV + T + V + GGVS+ ++ + + G +++ TPGR Sbjct: 76 VRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAEFKAGIDVLIATPGR 135 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L DH+R LN+ L +V DEAD MLD+GF D+I+ +L P +R+ L+FSAT+ +I Sbjct: 136 LLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLLFSATLDDSIF 195 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253 +KN +D + +A N + ++ R + SDR V +++R + ++F T Sbjct: 196 GFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAID-SDRKTEFVSHLVRSKNWQQVLIFSRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + T L + A G+LSQ R L+ + G +V +ATDVAARG+D+ DL Sbjct: 255 KQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLVATDVAARGLDIADL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 315 QYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 351 >gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC 43243] gi|217991428|gb|EEC57434.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC 43243] Length = 559 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 157/538 (29%), Positives = 270/538 (50%), Gaps = 37/538 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +A+ + G+ + +Q + L KD++ AQTG+GKT A+G+ + ++ Sbjct: 32 NVDEKILKAIGDMGFEEASPIQAKAIPVVLEGKDIVGQAQTGTGKTAAYGIPMLQSI--- 88 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ 122 P + A+ + PTRELA+QV E+ L Y + V+ V GG + R+ + L+ Sbjct: 89 ----DPKLKCVQAVVLCPTRELAIQVADEIRKLAKYMSSIKVLPV-YGGQEIVRQIKSLK 143 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G IVVGTPGR+ DH+R K + +K V+LDEADEMLD+GFR+D+E IL P++R+ Sbjct: 144 TGVQIVVGTPGRVMDHMRRKTVKFDKVKMVILDEADEMLDMGFREDMETILTQMPEERQT 203 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT+ AI +A+ +Q DA + + + +I+ V ++D + ++ + Sbjct: 204 VMFSATMPKAIMDIARTFQNDAEVIKVVRKELTVENIEQYYFEVRSKNKDEILSRLIDIY 263 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K ++VFC+T+ V L + + G++ Q +R + R G+ + IATD Sbjct: 264 NPKLSVVFCNTKKQVDDLISELKGRGYFADGIHGDMKQAQRDRVMNDFRKGKTEILIATD 323 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+++V + +L + E +HR GRTGRAGR G++ + + + + R Sbjct: 324 VAARGIDVDDVDIVFNYDLPQDEEYYVHRIGRTGRAGRAGLAFSFVTGKEIYKLKDIERY 383 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKI--AA 418 ++ PS++ ++ + + G D + +V+ + D I AA Sbjct: 384 CKTKIMARQIPSLDDVKNTRIDNLFEQVRKTLEAGGLADMRAIVEEKINDEDYTSIDLAA 443 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL--SVGSK 476 L+ +V G D R+D V D GS L ++G K Sbjct: 444 ALLK----------------MVLGDDHDREDD-VLPVHFDDNDG-NGSKMVRLFINIGKK 485 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534 K + ++ + SG+ + +G+I + TFVEV D++ + + +Q+K Sbjct: 486 DKVKPSNILGAIAGESGMPGKLVGSIDMYDAYTFVEVPRKYADIVLKA--MSNNVQIK 541 >gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2] gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2] Length = 502 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 128/336 (38%), Positives = 194/336 (57%), Gaps = 9/336 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77 G+ T +QEA + L+ +DV+ AQTG+GKT AFGL + ++ PA+ L Sbjct: 20 GFEEATPIQEATIPLALQGRDVIGQAQTGTGKTAAFGLPML-------EKIDPANHQLQG 72 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L IAPTRELA+Q EL L + V GG + R+ R L++ HIVVGTPGR+ D Sbjct: 73 LVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDRPHIVVGTPGRMLD 132 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI L + ++ +VLDEADEML++GF +DIE I+ P++R+ L+FSAT+ PAI ++ Sbjct: 133 HINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPEERQTLLFSATMPPAIKSIG 192 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + K+ V I ++ ID V ++ + + +L + IVF T+ V Sbjct: 193 VKFMKNPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTPELTIVFGRTKRRV 252 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + L ++ + G+LSQQ+R + L+ + G + +ATDVAARG+D+ + V Sbjct: 253 DELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVY 312 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + ++ +PE+ +HR GRTGRAG+ G+SV FV P M Sbjct: 313 NYDIPQDPESYVHRIGRTGRAGKGGISVTFVTPNEM 348 >gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b] Length = 589 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 199/347 (57%), Gaps = 8/347 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N + +AL + ++ + +Q + L+ +D + AQTG+GKT AF L + L E Sbjct: 12 NFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPE 71 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 S AL +APTRELA+QV + E L + V +AV GG R+ + L++G Sbjct: 72 ------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHI L +++LK +LDEADEML +GF +D+E IL+ P+K++M + Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A Y D + I E I+ R + ++ + +A++ +L Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T++S ++L +H + +A+ G+++Q R + + G + +ATDVA Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 ARG+D+ + VI+ ++ + E +HR GRTGRAGR G+++ FV P+ Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPK 352 >gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58] gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58] Length = 715 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 168/538 (31%), Positives = 271/538 (50%), Gaps = 47/538 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E GY + +QEA + L +DV+ AQTG+GKT AF L S L D A Sbjct: 62 AVEELGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLAETTDVNGRAD 121 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELA+QV + YAK V V GG + L+ GA +VVGT Sbjct: 122 TPQVLVLAPTRELALQVADAFDS-YAKHLDDVSVLAVYGGSPYGPQLAGLRRGAQVVVGT 180 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S L+ +VLDEADEML +GF ++++ IL S+P ++ +FSAT+ P Sbjct: 181 PGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTKQTALFSATMPP 240 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI ++ Y V +A ++ + I R + V + A+ IL I F Sbjct: 241 AIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWKFEALSRILETEEHDGVIAFV 300 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TRA + L F+ VA+SG+++Q++R ++ ++ GR + +ATDVAARG+D+ Sbjct: 301 RTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVE 360 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR+G +V F+ P+ + ++ ER R+ + Sbjct: 361 RISHVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMA 420 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI-----QGDEKKM------VDVLLAKH--DPEK 415 V A R+R F D I + E+++ V + +H +P + Sbjct: 421 VPSVADVNAARKR---------RFADGITRTLERASEEELAVFGEIVAAYVDEHQAEPSR 471 Query: 416 IAAGFLRIHRAG--LCAPEEITPVSLVSGRDRFR---------------DDSRAFKVGGG 458 +AA + + G L A E+ P GR D R + G Sbjct: 472 VAAALGMMAQGGRPLLAREQEIPFGGARGRKDRDGGREGGRDGGRERGTSDGRGSR--GP 529 Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +R+ G++ + ++VG + + ++ L G+ +IGAI ++ + + VE+ AD Sbjct: 530 AREPAAGNATYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPAD 587 >gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL 12] Length = 493 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 130/351 (37%), Positives = 194/351 (55%), Gaps = 15/351 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+SE GY T +Q + P L +DVL AQTG+GKT +F L + + L Sbjct: 11 PKVL-KAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITMLRKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L +APTRELA QV + T + A+ IGGVS + + G + Sbjct: 70 R---ARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ +K +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-----NILRY- 241 T++P I + + + RV +A ++ I V S RD A +LR Sbjct: 187 TMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKREMLRAL 246 Query: 242 -----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 G +NAI+FC+ + V K L +H + + G+L Q +R+ L RDG + Sbjct: 247 IEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQFRDGTLK 306 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +A+DVAARG+D+P++ V + ++ S+ E+ +HR GRTGRAGRKG ++ + Sbjct: 307 FLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLML 357 >gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564] gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564] Length = 523 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 409 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 190/337 (56%), Gaps = 2/337 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY T +Q + L ++DV+ AQTG+GKT AF L + LL +N Sbjct: 16 LAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPVLQQLLLDNQSQDAPKD 75 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL + PTRELAVQV + T + + + GGVS+ ++ + + G +++ TPGR Sbjct: 76 IRALVLVPTRELAVQVQQSFGKYAKGTDIRIGIAYGGVSIEAQQAEFKAGIDVLIATPGR 135 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L DH+R LN+ HL +V DEAD MLD+GF D+I+ +L P +R+ L+FSAT+ +I Sbjct: 136 LLDHLRQGALNLKHLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLLFSATLDDSIF 195 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253 +KN ++ + +A N + ++ R + SDR V +++R + ++F T Sbjct: 196 GFSKNLLREPKLIEVAKRNTTAAQVEQRVYAID-SDRKTEFVSHLVRSKNWQQVLIFSRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + T L + A G+LSQ R L+ + G +V +ATDVAARG+D+ DL Sbjct: 255 KQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLVATDVAARGLDIADL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 315 QYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQ 351 >gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1] gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1] Length = 615 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 127/341 (37%), Positives = 206/341 (60%), Gaps = 10/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA+ GY +++Q A + L+ +DV+ AQTG+GKT AF L + S L D + Sbjct: 40 EAVKALGYETPSAIQAATIPTLLQGRDVVGLAQTGTGKTAAFALPVLSNL----DVYQ-- 93 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +AP AL +APTRELA+QV E YA GV + GG + L+ G H+VVG Sbjct: 94 NAPQALVLAPTRELALQVCEAFER-YASNLDGVRILPVYGGQGYGPQLTALRRGVHVVVG 152 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ L++S L+ +VLDEADEML++GF +D+E IL +P+ +++ +FSAT+ Sbjct: 153 TPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVETILAETPEDKQVALFSATMP 212 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L+K Y +DA +++ ++ + +++I R ++V+ + +A+ IL + IVF Sbjct: 213 AQIRRLSKKYLRDAEEISVKAKTQTNTNITQRYLMVSYPQKVDALTRILEVENFEGMIVF 272 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T++ + L F A++G+++Q +R + ++DG + +ATDVAARG+D+ Sbjct: 273 TRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSLDILVATDVAARGLDV 332 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + V++ +L ++ E +HR GRTGRAGR G ++ FV P+ Sbjct: 333 ERISHVVNYDLPTDVEAYVHRIGRTGRAGRTGDAISFVTPR 373 >gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp. FB24] gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24] Length = 747 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 167/556 (30%), Positives = 283/556 (50%), Gaps = 27/556 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY + +Q A + L +DV+ AQTG+GKT AF + S L +D P+ Sbjct: 104 ALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSR 163 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV E YAK V GG + + L+ GA +VVGT Sbjct: 164 KTQALVLAPTRELALQVA-EAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGT 222 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI L++S L+ +VLDEADEML +GF +D+E I +P R++ +FSAT+ Sbjct: 223 PGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDRQVALFSATMPS 282 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++K Y + +++ S+ ++ R + V + +A+ IL I F Sbjct: 283 QIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKLDALTRILEVEEFDGVIAFV 342 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L FQ A++G++ QQ+R + +++GR + +ATDVAARG+D+ Sbjct: 343 RTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLDVE 402 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ F+ P+ + R E+ R+ + Sbjct: 403 RISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMH 462 Query: 369 WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFL 421 A +V +R + A+RI + ++ ++ L++ ++ E +IAA Sbjct: 463 LPTAETVNTLRLGKFAERITE------TLASEDVAPFRDLISSYEEEHNVPASEIAAALA 516 Query: 422 RIHRAGL-CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 + + G +E+ R+R +D F G +R +G++ + ++VG +Q+ Sbjct: 517 IMAQGGQPLLVKELPAAPEFQKRERSKD---GFGSRGPTRTLTEGNATYRIAVGRRQRVM 573 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYL 536 ++ + GI+ IG I ++ D + VE+ AD + L RT + I L+ Sbjct: 574 PGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLELD 633 Query: 537 GGEKPDFRGYKSSGFK 552 G KP + G++ Sbjct: 634 NGRKPSGGAGERGGYQ 649 >gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261] gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261] Length = 521 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|220903642|ref|YP_002478954.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867941|gb|ACL48276.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 562 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 210/376 (55%), Gaps = 7/376 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E++P+ + A + G+ L VQ L L +D++V ++TGSGKT + L + L Sbjct: 46 LEDMPEDMRTACARAGWQGLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLPRLS 105 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 A+ AP AL +APTRELAVQV RE L+ TG+V GGV ++ L+N Sbjct: 106 AD------LKAPQALVLAPTRELAVQVEREAAVLFEGTGIVTVAVYGGVGYKKQMDALRN 159 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RM 182 GA ++VGTPGR+ DH+ + L++ L+ +V DEAD ML +GF D++ I P++R Sbjct: 160 GAQLIVGTPGRVLDHLLRRTLDLGDLRELVFDEADRMLSIGFYPDMKEIQRYLPRRRIHT 219 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT P + L+ + + ++++ + +++ + V D+D A+V +L Sbjct: 220 CLFSATYPPHVLKLSGEFMAEPAMLSLSQKEVHVAEVQHLFCEVKPMDKDRALVRLLETE 279 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +AI+FC+T+++V VL + LS +LSQ R L+ +R G+ + +ATD Sbjct: 280 NPASAIIFCNTKSNVHYVAGVLQGFGYNADELSADLSQSRREAVLEKIRQGKLQYLVATD 339 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+P+L V E + E+ +HR+GRTGRAG G + ++ + +R+ + Sbjct: 340 VAARGIDIPELSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDVMQRMELDRIAKH 399 Query: 363 ANVSVVWEPAPSVEAI 378 + ++ P P+ E + Sbjct: 400 YKIGLIPLPLPTDEDV 415 >gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby] gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99 Alcoy] gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby] gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99 Alcoy] Length = 589 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 199/347 (57%), Gaps = 8/347 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N + +AL + ++ + +Q + L+ +D + AQTG+GKT AF L + L E Sbjct: 12 NFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPE 71 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 S AL +APTRELA+QV + E L + V +AV GG R+ + L++G Sbjct: 72 ------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHI L +++LK +LDEADEML +GF +D+E IL+ P+K++M + Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A Y D + I E I+ R + ++ + +A++ +L Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T++S ++L +H + +A+ G+++Q R + + G + +ATDVA Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 ARG+D+ + VI+ ++ + E +HR GRTGRAGR G+++ FV P+ Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPK 352 >gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 648 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 141/406 (34%), Positives = 223/406 (54%), Gaps = 15/406 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S + Sbjct: 38 KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLHQVK---- 93 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGT Sbjct: 94 --PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 151 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P +R++ +FSAT+ P Sbjct: 152 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPAQRQVALFSATMPP 211 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 212 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 271 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A+ + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 272 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 331 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R ER R+ + Sbjct: 332 RISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 391 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +++ G + M LL +++ E Sbjct: 392 L---PSVDAVNDTRVARFMSR--ITETLAGGQIDMYRDLLQRYEAE 432 >gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605] gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605] Length = 607 Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 129/338 (38%), Positives = 199/338 (58%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+++GY + +Q+A + +D++ AQTG+GKT AF L L L S Sbjct: 72 LADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL------ESGQKT 125 Query: 75 PLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL +APTRELA+QV + A + V GG + L+ G +VVGTPG Sbjct: 126 PQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGVDVVVGTPG 185 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+R L+ S L+++VLDEADEML +GF DD+E+ILD P++R++++FSAT+ P I Sbjct: 186 RVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFSATMPPEI 245 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+K Y KD V I +++++ I R++ V + + A+ +L G++ I+F T Sbjct: 246 RRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGSEGVIIFART 305 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 +A + L QV L+G++ Q +R ++ +R G + +ATDVAARG+D+ + Sbjct: 306 KAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVERI 365 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 LVI+ ++ + E +HR GRTGRAGR G +V FV P+ Sbjct: 366 GLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPR 403 >gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group] Length = 779 Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 132/401 (32%), Positives = 221/401 (55%), Gaps = 24/401 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQ--------------EAILNPDLREKDVLVSAQTGSGKTV 52 +P+ + L +RG +L +Q A+L P L +D++ A+TG+GKT+ Sbjct: 118 LPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLIARAKTGTGKTL 177 Query: 53 AFGLALASTLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI- 109 AFG+ + L+ E+D S P L +APTRELA QV +E++ K + VC+ Sbjct: 178 AFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK---LSTVCVY 234 Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169 GGVS + ++ L G +VVGTPGR+ D I G L + +K +VLDEAD+ML +GF +D+ Sbjct: 235 GGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDV 294 Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVA 227 E IL P +R+ ++FSAT+ + L++ Y + + +++ + + I A+ + Sbjct: 295 ETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLT 354 Query: 228 LSDRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286 + + + +++ Y IVF T+ + L + AL G++SQ +R Sbjct: 355 STSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASE-ALHGDISQHQRERT 413 Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346 L R G+ V +ATDVAARG+D+P+++L+IH EL ++PE +HRSGRTGRAG+ G ++ Sbjct: 414 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAIL 473 Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387 + + +R L R+ + P++E + E A+ ++ Sbjct: 474 MFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVI 514 >gi|167032455|ref|YP_001667686.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida GB-1] gi|166858943|gb|ABY97350.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1] Length = 560 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 166/550 (30%), Positives = 281/550 (51%), Gaps = 34/550 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + + + Sbjct: 15 PNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVSK- 72 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 P AL +APTRELA+QV E YAK GV V GG + + R ++NGA Sbjct: 73 -----REPQALILAPTRELALQVATAFET-YAKQMPGVNVVAVYGGAPMGPQLRAIRNGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRLCDH+R +S ++ +VLDEADEML LGF DD+E I D+ P R+ ++F Sbjct: 127 QIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I ++A+ + ++ V I ++ + + I+ ++V + A++ +L Sbjct: 187 SATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I F T+ + L ++ AL+G+++Q +R + ++DGR + +ATDVAA Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+P + V + ++ +PE+ +HR GRTGRAGR G ++ ++ +R + + R Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQ 366 Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFL 421 V P+ +A+ + +++ PL ++ + ++ D L + +A+ L Sbjct: 367 KVAEARLPNAQAVLDARIKKLTSSLAPLVAEA-EATHGELFDRLTSDLGCSARALASALL 425 Query: 422 RIHRAG----LCAPEEITPVSLVSG-----RDRFRDDSRAFKVGGGSRDN------FKGS 466 R G L A E P LV G +R R + G R+ +G Sbjct: 426 RKATNGQALDLAAVEREQP--LVPGVGAPRGERSERPDRGERPDRGDRERRAPLPLAEGR 483 Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 ++G++ A+ L+ + G+ R +IG I+V+ + VE+ DG++ L +K Sbjct: 484 VRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLK 543 Query: 527 LDK--GIQLK 534 + G QLK Sbjct: 544 DTRVAGKQLK 553 >gi|238755161|ref|ZP_04616507.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473] gi|238706608|gb|EEP98979.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473] Length = 656 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 182/568 (32%), Positives = 270/568 (47%), Gaps = 54/568 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72 AL++ GY + +Q + L +DVL AQTGSGKT AFGL L + P Sbjct: 21 ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI-------DPTL 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQV L +GV V GG + R L+ G +VVGT Sbjct: 74 KAPQVLVLAPTRELAVQVAEALSSFSKHISGVNVVALYGGQRYDVQLRALRQGPQVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 134 PGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPE 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAIVF 250 AI + + + KD V I S N DI V R N A+V L AI+F Sbjct: 194 AIRRITRRFMKDPQEVRIQSSNTTRPDISQSYWKVGGGYRKNEALVRFLESEDFDAAIIF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + AL+G+++Q R L+ +RDGR + IATDVAARG+D+ Sbjct: 254 VRTKNATLEVAETLERSGYSSAALNGDMNQSLREQTLERLRDGRLDILIATDVAARGLDV 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + + R +++ Sbjct: 314 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIERTMKLTIPEV 373 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDV---LLAKHDPE------------ 414 P+ E + ER + F + Q E +DV LL K PE Sbjct: 374 MLPNAELLGERRLAK------FAAKVSQQLESSDLDVYRGLLTKLQPEDEFDIEALAAAL 427 Query: 415 -KIAAGFLRIHRAGLCAPEEI-TPVSLVSGR-DRFRDDSRAFKVGGGSRD---------- 461 K+A G R + PE + P S R DR D + SRD Sbjct: 428 LKMAQG----ERPLILPPEPVRRPQREFSPREDRGNDRGDRRERRPESRDGAERPARRER 483 Query: 462 -NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516 + + + VG E R ++ + I+ + IG I++ + +E+ D Sbjct: 484 RDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGD 543 Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 + RT L+K + ++ LG +P R Sbjct: 544 MLSHFTRTRILNKPLNMQLLGDAQPHER 571 >gi|228471344|ref|ZP_04056145.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas uenonis 60-3] gi|228306845|gb|EEK15958.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas uenonis 60-3] Length = 553 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 163/524 (31%), Positives = 271/524 (51%), Gaps = 33/524 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A ++ G+ VQ+ ++ P L D++ ++TGSGKT A+GL L ++ + Sbjct: 15 ATTDLGFSEPMPVQQEVI-PYLSTHRGDLIALSKTGSGKTAAYGLPLLERIIQ-----AK 68 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGAHIVVG 130 SAP L + PTRELA+QV +L L T V + GG S+ + R L G HI+V Sbjct: 69 GSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQLAKGYHIIVA 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRLCD IR K + + + VVLDEAD MLD+GF+ D++ IL + P++ +FSAT+S Sbjct: 129 TPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQVEHWLFSATMS 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +A NY DA V I + N+ ++DI + V V + A+ ++ Y+ I+F Sbjct: 189 REVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRVVDYYPNIYGIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TRA + L + AL G+LSQ +R + R ++ +ATDVAARG+D+ Sbjct: 249 CRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQLLVATDVAARGLDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D+ V+H L ++P++ HRSGRT RAG+ G+S+ + ++ + + A + + Sbjct: 309 DDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRIIEQHAGIRIESM 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVL---LAKHDPEKIAAGFL-- 421 P PS + I ++ + + DS Q DE +++ + LA PE+I L Sbjct: 369 PLPSGQEICKKQLFALATRIEYADSNEHGTQYDE--LLNAIVQKLAWLPPEEIIRRVLTL 426 Query: 422 ---RIHRAGLCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDNFKGSSWFSLS 472 RI R P +++ L + ++R + +A K SR + + ++ Sbjct: 427 EADRIMRYYANTP-DLSAQELATEEPKYRTKGSPEEHRKAPK--KRSRTDLPPMTSLRIN 483 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +G + K L+ ++ R+ + +IG I + P ++ EV+++ Sbjct: 484 LGKRDKLYPNRLLELINRTLPY-KITIGKIDLSPSYSYFEVASE 526 >gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] Length = 546 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 148/434 (34%), Positives = 239/434 (55%), Gaps = 24/434 (5%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 MK F P+V+ +A++E G+ T +Q + L D++ AQTG+GKT AFG+ Sbjct: 1 MKTFAEFGLEPKVL-QAITELGFEEATPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIP 59 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L + + DR +AL + PTRELA+QV E+ L G+ GG + R+ Sbjct: 60 LINKIPVTEDRI------VALIMTPTRELAIQVAEEIGKLTRYKGLRSLPIYGGQEIGRQ 113 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R L+ I++GTPGRL DHI K + ++ ++ V+LDEADEMLD+GF +DI IL P Sbjct: 114 IRALKKHPQIIIGTPGRLLDHINRKTIKLADVQTVILDEADEMLDMGFMEDITSILSMVP 173 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 +R+ ++FSAT+ P I LA+ + + V++ + ID + V + A+ Sbjct: 174 AERQTMLFSATMPPNIQRLAQTFLNNPEHVSVIPKQVSAPLIDQAYIEVHERQKFEALSR 233 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ + AI+F T+ V ++ L + + L G+LSQ +R N ++ RDG V Sbjct: 234 LIDMESPELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDV 293 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRR- 355 +ATDVAARG+D+ + VI+ +L +PE+ +HR GRTGRAG++G + FV P+ Sbjct: 294 LVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPRETDHLH 353 Query: 356 -AERLFREANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGD---EKKMVDV-LLA 409 E++ R + +P PS+ EAI + QR+ + L +D +Q + E K + + LL Sbjct: 354 FIEKVTRH---KITRKPLPSIAEAIEGK--QRVTAERL-IDIVQNEGNQEYKGIAIHLLE 407 Query: 410 KHDPEKIAAGFLRI 423 ++D + A +++ Sbjct: 408 QYDSVNLLAAAIKL 421 >gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC 6249] gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC 6249] Length = 525 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPEAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum NCTC 2916] gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium botulinum A2 str. Kyoto] gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum NCTC 2916] gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A2 str. Kyoto] Length = 524 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 156/520 (30%), Positives = 267/520 (51%), Gaps = 44/520 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ G+ +++QE + L DV+ AQTG+GKT+AFG + S L + Sbjct: 10 NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + AL + PTRELA+Q+ EL+ L Y+KT V+ GG S+ R+ +D+++ Sbjct: 70 EKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGR+ DHI + L + + +VLDEADEML++GF +DIE I++S+ ++++ + Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I LA NY +KD + I ++ I V D+ A+ I+ Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSE 243 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++AI+FC T+ V + + + V + G++SQ +R N L+ + +ATD Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 VAARGID+ ++ VI+ ++ + E+ +HR GRTGRA ++G + V P+ + R+ ER+ Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415 + + + P++E I E+ +L D I+ ++ + MV L D + Sbjct: 364 TKS---KIKKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSQ 418 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 ++A + + L S F + + R LSVG Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 K + L+ + ++ + IG I + TF++VS+ Sbjct: 456 KDSINVKSLLTFIQDAASVKNHEIGDIDILDKFTFMDVSS 495 >gi|323493918|ref|ZP_08099035.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546] gi|323311859|gb|EGA65006.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546] Length = 458 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 204/368 (55%), Gaps = 11/368 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L GY +T +Q+ L L KDV+ +TGSGKT F L L S L + R Sbjct: 16 ETLDSLGYTEMTPIQQQALPMVLSGKDVIGQGKTGSGKTATFSLGLLSNLNVKRFRVQ-- 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L + PTRELA QV +E+ L + V GG+ + + L++GAHI+VGT Sbjct: 74 ----TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ +++ L +VLDEAD MLD+GF D I+ I++++P KR+ L+FSAT Sbjct: 130 PGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIEAAPAKRQTLLFSATFPN 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + V + S + + I+ R L +RD+A+ +L H ++++VF Sbjct: 190 NIESLAAKVMVNPEMVKVES-THEKTTIEQRFYQLNTTEERDDALEALLLTHKPESSVVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V L+ F VV L G++ Q+ER AL M + + +ATDVAARG+D+ Sbjct: 249 CNTKKEVQNVADELSHRGFSVVELHGDMEQREREQALTMFANKSISILVATDVAARGLDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVSVV 368 +L+ V + ELS +PE +HR GRTGRAG KG++ + R R+ + + +S V Sbjct: 309 DNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFFSEKEAYRVARIDEYMDIAISPV 368 Query: 369 WEPAPSVE 376 P +E Sbjct: 369 QLPEKPIE 376 >gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175] gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175] Length = 520 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 153/457 (33%), Positives = 238/457 (52%), Gaps = 26/457 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E++ + G+ T +Q + L+ DV+ AQTG+GKT AFGL + + P+ Sbjct: 25 ESIEKMGFEEATPIQAQTIPKALQGLDVIGQAQTGTGKTAAFGLPMLQ-------KIDPS 77 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + L IAPTRELA+Q EL L + V GG ++R+ R L+ IVVGT Sbjct: 78 KKGVQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADINRQIRQLKENPQIVVGT 137 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI + L + ++ +VLDEADEML++GF +DIE I+ P+ R+ L+FSAT+ Sbjct: 138 PGRLLDHISRRTLKLGAVETLVLDEADEMLNMGFLEDIESIIKQVPENRQTLLFSATMPD 197 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + KD V I S + ID V ++ + + +L + IVF Sbjct: 198 DIKRIGVQFMKDPEHVRIKSNEMTATLIDQYFVKCKDYEKFDIMTRLLDVQTPELTIVFG 257 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + L ++ + G+LSQQ+R + L+ ++ + +ATDVAARG+D+ Sbjct: 258 RTKRRVDELARGLEMRGYRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATDVAARGLDIS 317 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVV 368 + V + ++ +PE+ +HR GRTGRAG++GMSV FV P M R E L R+ S+ Sbjct: 318 GVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVIEELTRKRMTSL- 376 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFLR-IHRA 426 P EA+ + I + +++ K+ V LL +++PE++AA L+ + + Sbjct: 377 -RPPTQTEALEGQTKTAIESIDEMMKTVEPRRFKEAVSYLLDEYEPEELAALLLKSMIKD 435 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463 P +ITP + R R G SR N+ Sbjct: 436 PTEIPVKITPERPLPSRKR-----------GNSRGNY 461 >gi|120435454|ref|YP_861140.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella forsetii KT0803] gi|117577604|emb|CAL66073.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella forsetii KT0803] Length = 597 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 158/528 (29%), Positives = 265/528 (50%), Gaps = 47/528 (8%) Query: 13 EALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +A+ + G+ + VQE + P L EK D++ AQTG+GKT AFG L + A + + Sbjct: 15 KAIEDMGFETPSEVQEKSI-PILLEKETDLVSLAQTGTGKTAAFGFPLIQKIDANSKKTQ 73 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL ++PTREL +Q+ E++ Y K+ VVAV GG S+ + R ++ GA I+ Sbjct: 74 ------ALILSPTRELCLQITNEIKNYSKYKKSLNVVAV-YGGASITDQARSIERGAQII 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGR+ D IR + NIS + VLDEADEML++GF +DI+ IL +PK+++ +FSAT Sbjct: 127 VATPGRMQDMIRRRLANISSIGYCVLDEADEMLNMGFYEDIKTILSHTPKEKKTWLFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + +AK + D + + + S+N+ S++ + LV +R +A+ + + ++ Sbjct: 187 MPKEVAKIAKKFMTDPIEITVGSKNKGTSNVSHEYYLVNHRNRYDALKRLADANPEIFSV 246 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ + + L E + AL G+LSQ +R ++ R + ++ +ATDVAARGI Sbjct: 247 IFCRTKRDTQKVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRSRQIQMLVATDVAARGI 306 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ D+ VI+ +L E HRSGRTGRAG++G+S+ +I ++ R+ + + Sbjct: 307 DVDDITHVINYQLPDEIETYTHRSGRTGRAGKQGVSMVIISKSEVRKIRTVEKIIQQKFE 366 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK------------MVDVLLAKHDPEKI 416 + P D + I + LF + D KK ++ L E++ Sbjct: 367 EKTIP--------DGKEICKTQLF--HLANDIKKTEINHDIDPYLPTINEALEDFTKEEL 416 Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476 F + E P D A VGG + +G++ + +++GSK Sbjct: 417 IKKFFSVEFTRFFNYYEKAP------------DLSAESVGGRPPVS-EGNTRYFINIGSK 463 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 + L L + R + + V+ +F DL+ +T Sbjct: 464 DGFDWMSLKDFLKEQLDLGRDDVFKVDVKASFSFFNTDEQHTDLILKT 511 >gi|291562141|emb|CBL40957.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium SS3/4] Length = 560 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 140/428 (32%), Positives = 235/428 (54%), Gaps = 20/428 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A+++ G+ + +Q + ++ D++ AQTG+GKT AFG+ L + E Sbjct: 10 NLDPRILRAVTDMGFEAASPIQAQAIPVEMEGHDMIGQAQTGTGKTAAFGIPLLMKMDPE 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 N + A+ + PTRELA+QV EL L AK +G+ + GG + ++ R L+ Sbjct: 70 NRKTQ------AMILCPTRELAIQVAEELRRL-AKYMSGIKILPVYGGQEIVKQIRSLKG 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I+VGTPGR+ DH+R K + + VVLDEADEML++GF +D+E IL P++R+ + Sbjct: 123 GVQIIVGTPGRVMDHMRRKTIRTDAIHTVVLDEADEMLNMGFLEDMETILGELPEERQTV 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT+ AI +A+ +QKD V + + + V ++ + +L + Sbjct: 183 MFSATMPHAIAQIAQKFQKDPKMVQVVKKELTVPKVTQYYYEVKPRNKVEVMCRLLDLYS 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K ++ FC+T+ V + L + L G+L Q++R + R+G + +ATDV Sbjct: 243 PKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQEQRDRVMGSFRNGATEILVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D+E V + ++ + E +HR GRTGRAGR+G + + + + + R Sbjct: 303 AARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGRAFSLAVGSEVYKLRDIQRFC 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE---KKMVDV----LLAK-HDPEK 415 +V +P PS++ + A++IL D + GD+ ++M D+ LLA+ + + Sbjct: 363 KTKIVPQPIPSLDDVTAIKAEKILDD---VQQHIGDDSNLERMTDIIEKRLLAEDYTSLE 419 Query: 416 IAAGFLRI 423 +AA FL++ Sbjct: 420 LAAAFLKM 427 >gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris] gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris] Length = 589 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 198/347 (57%), Gaps = 8/347 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N + +AL + ++ + +Q + L +D + AQTG+GKT AF L + L E Sbjct: 12 NFSSALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQNLSPE 71 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 S AL +APTRELA+QV + E L + V +AV GG R+ + L++G Sbjct: 72 ------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DHI L +++LK +LDEADEML +GF +D+E IL+ P+K++M + Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A Y D + I E I+ R + ++ + +A++ +L Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T++S ++L +H + +A+ G+++Q R + + G + +ATDVA Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 ARG+D+ + VI+ ++ + E +HR GRTGRAGR G+++ FV P+ Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPK 352 >gi|296328514|ref|ZP_06871033.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154323|gb|EFG95122.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 528 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 154/507 (30%), Positives = 251/507 (49%), Gaps = 35/507 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + LS++GY + T +Q + L+ +KD++ AQTG+GKT AF L + + F Sbjct: 21 KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VVGT Sbjct: 74 LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ LK +LDEADEML++GF +DIE IL + + +RML FSAT+ Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249 I +AKN+ K+ + + S R+ + + +++RD A+ I+ I+ Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARGID Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370 Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 E P V+ + + RI+ D + +D+ KK+ LL D E I A L++ + Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 + +S V D G + +++G K + L+ Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVE 471 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + S I + I V +FV V Sbjct: 472 FIVKKSKIKQSYIKNAEVYEGFSFVSV 498 >gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus AHT 1] Length = 470 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 146/460 (31%), Positives = 242/460 (52%), Gaps = 21/460 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+S G+ T +QE + L+ D++ A TG+GKT AFG+ + L Sbjct: 15 QAVSNMGFEEATPIQEQAIPTALKGLDLIGQAHTGTGKTAAFGVPMVEKLEKN------G 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S AL + PTRELAVQV EL + G+ GG + R+ R LQ I+VGTP Sbjct: 69 STVQALVVTPTRELAVQVAEELNKIGQYKGIRTLPVYGGQDIGRQIRGLQKRPQIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHIR + + + + VVLDEADEML++GF +DIE IL +P++R+ L+FSAT+ Sbjct: 129 GRLLDHIRRRTVRLGQVSMVVLDEADEMLNMGFIEDIEAILQETPQERQTLLFSATMPGP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ + +D ++++ S+ + + +++ + + + +L AIVF Sbjct: 189 IEQLARRFMRDPQKISVRSKEVTVPNTEQFHMVMEERQKFDVLCRLLDTQSPDLAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L + + + G+++Q R + ++ +DG + +ATDVAARG+D+ Sbjct: 249 TKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDILVATDVAARGLDITG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + ++ +PE+ +HR GRTGRAG GM+V + N + R S + P Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGNTGMAVTFV-SNREVGHLRTIEYGTKSRI--PR 365 Query: 373 PSVEAIRE--RDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRA 426 S ++E QRI + L L +++ ++ + + D LL +HD E I A L++ Sbjct: 366 LSTPTVKEAIEGQQRIAVEKL-LKTVESEDITHYQPLADELLNEHDAETILAAALKM--- 421 Query: 427 GLCAPEEITPVSLVSGRDRF-RDDSRAFKVGGGSRDNFKG 465 L + TPV L ++ + ++ ++ G R+ KG Sbjct: 422 -LTKEPDTTPVKLTEEAPQWSKRQNKPYQGGHYRRNKHKG 460 >gi|113866090|ref|YP_724579.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha H16] gi|113524866|emb|CAJ91211.1| ATP-dependent RNA helicase [Ralstonia eutropha H16] Length = 469 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 143/403 (35%), Positives = 221/403 (54%), Gaps = 13/403 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N+P + L++ GY +T +Q A L L +D++ A+TGSGKT AFGLAL Sbjct: 14 FSNLPLSPTMLATLAQLGYDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHR 73 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRD 120 L + RF A+ + PTRELA QV +E+ L A+ + V GG + + Sbjct: 74 L--DPRRFDVQ----AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGSPMRPQVDS 127 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L +GAHIVVGTPGR+ DHI L++S + +VLDEAD MLD+GF DDI ++ PK R Sbjct: 128 LIHGAHIVVGTPGRILDHIDRGSLDLSGINTLVLDEADRMLDMGFFDDIAYVASRCPKDR 187 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT P I L+ + ++ V + + + ++ I R V +R N + +L Sbjct: 188 QTLLFSATYPPGIDKLSHRFLRNPQSVKLEATH-DNTTIRQRFYEVEEGERLNTVGRLLD 246 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + + + FC+T+A ++L +Q +AL GEL Q+ER L + V +A Sbjct: 247 HFRPVSTLAFCNTKARCRELVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLVA 306 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+ LE VI+ E++ +PE +HR GRTGRA ++G + ++ + R L Sbjct: 307 TDVAARGLDIAQLEAVINVEITPDPEVHVHRIGRTGRADQEGWAFSLVSMDEMGRVGNLE 366 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403 + W+P + +R +R+L + L + G ++K+ Sbjct: 367 QHHGGEFEWQP---LADLRPASNERLLPPMVTLQMLGGRKEKI 406 >gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30] gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10] gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20] gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30] gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10] gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20] Length = 507 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 188/335 (56%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +QEA + L KDV+ AQTG+GKT AFGL + + N + L Sbjct: 20 GFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPMLEKIDPTNHQLQ------GL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELA+Q EL L + V GG + R+ R L++ HIVVGTPGR+ DH Sbjct: 74 VIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDRPHIVVGTPGRMLDH 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I L + ++ +VLDEADEML++GF +DIE I+ P R+ L+FSAT+ PAI + Sbjct: 134 INRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQTLLFSATMPPAIKNIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V I ++ ID V ++ + + +L + IVF T+ V Sbjct: 194 KFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTPELTIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L ++ + G+LSQQ+R + L+ + G+ + +ATDVAARG+D+ + V + Sbjct: 254 ELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain [Cupriavidus taiwanensis LMG 19424] gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain [Cupriavidus taiwanensis LMG 19424] Length = 511 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 135/352 (38%), Positives = 201/352 (57%), Gaps = 9/352 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69 I ALSE+GY + T +Q + L KDV+ +AQTG+GKT F L + LL N Sbjct: 41 ILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPLANASA 100 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + V GGV ++ + L+ G I+ Sbjct: 101 SPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEIL 160 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF D++ I++ P +R+ L+FSAT Sbjct: 161 VATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFSAT 220 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG----A 244 SP I LA +Y K V + +A N + ++ V + A+V++L+ + Sbjct: 221 FSPEIKRLASSYLKQPVTIEVARSNSTNENVRQAVYQVEDGHKQAAVVHLLKQRAEQSQS 280 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF +++ SR + L A+ G+ +Q ER L + G +ATDVA Sbjct: 281 RQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKSGTIDALVATDVA 340 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQR 354 ARG+D+PD+ VI+ +L + E+ +HR GRTGRAG G +S++V P N +R Sbjct: 341 ARGLDIPDMPCVINFDLPYSAEDYVHRIGRTGRAGASGDALSIYV-PGNDER 391 >gi|256848375|ref|ZP_05553818.1| autoaggregation-mediating protein [Lactobacillus coleohominis 101-4-CHN] gi|256714973|gb|EEU29951.1| autoaggregation-mediating protein [Lactobacillus coleohominis 101-4-CHN] Length = 500 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 153/455 (33%), Positives = 235/455 (51%), Gaps = 19/455 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY T +Q + L+ +DV+ AQTG+GKT AFGL + + +N Sbjct: 27 AVKQSGYEEATPIQAQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEHIDLDN------P 80 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A A+ I+PTRELA+Q EL L V V V GG + R+ L+ I+VGTPG Sbjct: 81 AIQAIVISPTRELAIQTQEELYRLGHDKHVKVQVVYGGADIRRQINSLKKHPQILVGTPG 140 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI +N+ H++ +VLDEADEML++GF DDIE I+ +P+KR+ L+FSAT+ P I Sbjct: 141 RLRDHISRGTVNLEHIQTLVLDEADEMLNMGFLDDIEAIIKETPEKRQTLLFSATMPPEI 200 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + +D V I ++ +D V ++ + + ++ IVF T Sbjct: 201 KRIGVQFMRDPQMVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRLIDVQDPDLTIVFGRT 260 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V ++ L + + G+L+Q RS ++ ++G + +ATDVAARG+D+ + Sbjct: 261 KRRVDELSRGLVARGYNAAGIHGDLTQDRRSKIMKKFKNGDLDILVATDVAARGLDISGV 320 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370 V + ++ S+P++ +HR GRTGRAG G+S+ FV P M E+L R + + + Sbjct: 321 THVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVRMLPL--K 378 Query: 371 PAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P EA R + A + D L D ++ + LLA HD + A L Sbjct: 379 PPTEEEAFRGQVASAVNDIDDLIKDEATDKYRQSAEKLLATHDAVDLVAALLNDLTTDDA 438 Query: 430 A--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462 + P +ITP + R R SR G SR+N Sbjct: 439 SKVPVKITPERPLPRRHRHH-QSR----GHNSRNN 468 >gi|225011737|ref|ZP_03702175.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium MS024-2A] gi|225004240|gb|EEG42212.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium MS024-2A] Length = 553 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 211/369 (57%), Gaps = 10/369 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +A+ + G+ T VQ+ ++ P L E+ D++ AQTG+GKT AFG + + A+ Sbjct: 15 KAVEKLGFETPTEVQDKVI-PILLEQNTDLVALAQTGTGKTAAFGFPMLQRIDAKQ---- 69 Query: 71 PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 L +APTREL +Q+ E+ + A + + GG ++ + ++ GA IVV Sbjct: 70 --RTTQGLILAPTRELCLQITNEMGIYGQALKNINIVAIYGGANIQEQANKIRRGAQIVV 127 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D I + ++IS ++ VLDEADEML++GF +DI+ IL +PK + +FSAT+ Sbjct: 128 ATPGRLKDMIGRRLVDISAIQYCVLDEADEMLNMGFYEDIKDILTHTPKSKNSWLFSATM 187 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P + T+AK + K + + + ++N +ID++ +VA +R NA+ ++ + +V Sbjct: 188 PPEVNTIAKKFMKKPIEITVGTKNSSAKNIDHQYFIVAARERYNALRAVVSMNTDLFGVV 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ + + L + ++ A+ G+LSQ +R +Q R R ++ IATDVAARGID Sbjct: 248 FCRTKIETQKVAEKLIQDGYKAAAIHGDLSQNQRDIVMQSFRKKRIQLLIATDVAARGID 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + DL VI+ +L E HRSGRTGRAG+ G S+ + ++ +R+ + + + + Sbjct: 308 VDDLTHVINYQLPDEIETYTHRSGRTGRAGKLGTSIIFVTKSDRRKIKLIENKLQTKLTE 367 Query: 370 EPAPSVEAI 378 PS E + Sbjct: 368 LEMPSPEEV 376 >gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M334] gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9) [Streptococcus sp. M334] Length = 524 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S] gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] Length = 610 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 176/557 (31%), Positives = 281/557 (50%), Gaps = 62/557 (11%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +ALS+ GY + + +Q A + L KDV+ AQTG+GKT AF + + S L + DR Sbjct: 28 KALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILSRL--DVDR---- 81 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV A G+ V GG + + L+ GA I+VGT Sbjct: 82 KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRRGAQIIVGT 141 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S+L+ +VLDEADEML +GF+DD+E IL +P+ +++ +FSAT+ P Sbjct: 142 PGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVALFSATMPP 201 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI ++K Y D V + + ++ S+I R V VA + +A+ IL + I+F Sbjct: 202 AIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRILEVESFEAMIIFV 261 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L F A++G++ Q +R + ++ G + +ATDVAARG+D+ Sbjct: 262 RTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAARGLDVD 321 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G + +FV P +++ + ER R+ + Sbjct: 322 RISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSIERTTRQPLTEIQ 381 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 P+VE + +AQR+ + F DSI L K+ + R H L Sbjct: 382 L---PTVEDV---NAQRVSK---FGDSITESLNSENLALF-----RKLIEDYEREHDVPL 427 Query: 429 CAPEEITPVSLVSGRD-------------------RFRDDSRAFKVGG--GSRDNFKGSS 467 +I V RD +R F GG G R G Sbjct: 428 A---DIAAALAVQSRDGESFLMAPEPPAPPRREREPRERPARRFDDGGPSGPRVGRDGQE 484 Query: 468 W--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLL 521 + + ++VG + K ++ + G+ R G I ++PD + VE+ A + V+ L Sbjct: 485 FATYRIAVGKRHKVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPANLPKETVEAL 544 Query: 522 RRT--------VKLDKG 530 R T ++LD+G Sbjct: 545 RATRISGVLIQLQLDQG 561 >gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977] gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977] Length = 528 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 134/344 (38%), Positives = 197/344 (57%), Gaps = 12/344 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E+G T +Q L L DVL A+TG+GKT+AF L +A L E R +P Sbjct: 23 ALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAERL--EPSR-TPGR 79 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL +APTRELA+QV ELEW+ +V GG + L+ GA +VV TPG Sbjct: 80 PPRALVLAPTRELALQVAGELEWVAPHLRIVT--VYGGTGYGSQAAALKRGADVVVATPG 137 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R D++ L+++ ++ VLDEADEML +GF + +E +L ++P +R+ LMFSAT+ Sbjct: 138 RAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGATPAERQTLMFSATLPGWA 197 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNAIVNILRYHGAKNAIVFC 251 L + K+ VN+ Q ++ YR A+ + S R +A+ ++L HG + AIVF Sbjct: 198 KRLVGRHLKEPTVVNVV----QDEEVSYREIAIEASPSARMSALSDLLHAHGPERAIVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L A+ G+L+Q +R ++ R G+ V +ATDVAARG+D+P Sbjct: 254 RTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVATDVAARGLDIP 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 +++LV+H L E+ HRSGRTGRAGR G +V + + +RR Sbjct: 314 EVDLVVHLRLPERAESYQHRSGRTGRAGRSG-TVIIFHSSRERR 356 >gi|157371044|ref|YP_001479033.1| ATP-dependent RNA helicase DbpA [Serratia proteamaculans 568] gi|157322808|gb|ABV41905.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568] Length = 460 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 137/361 (37%), Positives = 203/361 (56%), Gaps = 14/361 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L D+ + A Sbjct: 19 LNELGYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKINVAQV 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 AAQALILCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGPQLDSLVHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF DDI+ ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQTLLFSATYPS 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ + V + + + + I+ R R +V+ +R++ + +VFC Sbjct: 191 GIERISARVQRSPLNVEV-DDGEEQTTIEQRFYETTRDQRPAVLVSAIRHYQPSSCVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKRDCQSVYEALESRGINVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 +LELV++ EL+ +PE +HR GRTGRAG G ++ PQ M RA + V W Sbjct: 310 ELELVVNYELAFDPEVHVHRIGRTGRAGLSGKAISLCTPQEMT-RAHAIEDYLQTKVKWA 368 Query: 371 P 371 P Sbjct: 369 P 369 >gi|224824286|ref|ZP_03697394.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] gi|224603705|gb|EEG09880.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] Length = 417 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 142/343 (41%), Positives = 201/343 (58%), Gaps = 5/343 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P + ALS+ GY+ +++Q + + L+ +DVL +AQTGSGKT AF L L L Sbjct: 5 PSLAQAALSQ-GYLAPSAIQTSAIPAILQGRDVLATAQTGSGKTAAFCLPLLQQWLTSR- 62 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGA 125 + SP AL + PTRELAVQVG L L V VAV GGVS++ + L+ GA Sbjct: 63 QGSPRQVQ-ALILLPTRELAVQVGNTLRELALSLPRRVKVAVVYGGVSINPQMMALRGGA 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL D I L+IS + +VLDEAD +LDLGF D++ +L P R+ L+F Sbjct: 122 DIVVATPGRLLDLIGYNALSISTVGTLVLDEADRLLDLGFADELGRLLALLPPYRQNLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT PA+ +LA+ +R++IA DI RA+ V S R + ++L+ HG Sbjct: 182 SATFPPAVHSLAEQLLSQPLRIDIAQTAATAPDIHQRAIEVDASQRTMLLRHLLQTHGWD 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF ++R + R T L + AL G+ SQ +R L ++ G+ +V +ATDVAA Sbjct: 242 RVLVFVASRQAADRVTGKLQRAGIRAAALHGDCSQGQRGQVLADLKSGQLQVLVATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+P L +V++ +L +P + HR GRTGRAG +G ++ I Sbjct: 302 RGIDIPLLPVVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFI 344 >gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109] gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109] Length = 607 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 129/338 (38%), Positives = 198/338 (58%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+++GY + +Q+A + +D++ AQTG+GKT AF L L L S Sbjct: 72 LADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL------ESGQKT 125 Query: 75 PLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL +APTRELA+QV + A + V GG + L+ G +VVGTPG Sbjct: 126 PQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGVDVVVGTPG 185 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+R L+ S L+++VLDEADEML +GF DD+E+ILD P++R++++FSAT+ P I Sbjct: 186 RVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFSATMPPEI 245 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+K Y KD V I +++++ I R++ V + + A+ +L G + I+F T Sbjct: 246 RRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFART 305 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 +A + L QV L+G++ Q +R ++ +R G + +ATDVAARG+D+ + Sbjct: 306 KAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVERI 365 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 LVI+ ++ + E +HR GRTGRAGR G +V FV P+ Sbjct: 366 GLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPR 403 >gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL S4-378] Length = 518 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 148/444 (33%), Positives = 238/444 (53%), Gaps = 30/444 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +N+ Sbjct: 15 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKNNNVQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 75 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + H++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 129 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M ++R + L Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 368 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA Sbjct: 369 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAA 419 Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443 L++ L + TPV + R Sbjct: 420 MLKM----LAKEPDKTPVHITEER 439 >gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM 20712] Length = 594 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 157/516 (30%), Positives = 267/516 (51%), Gaps = 16/516 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVS-AQTGSGKTVAFGLALASTLLAENDRF 69 I + + + G+ + VQE ++ L E++ LV+ AQTG+GKT AFGL L L Sbjct: 13 ILKGIEDLGFEVPSPVQEKVIPVILGEENDLVALAQTGTGKTAAFGLPLLQKL------D 66 Query: 70 SPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + +A L ++PTREL +Q+G++L+ + ++ + VA GG + ++ R+L G H++ Sbjct: 67 TSLNAIQVLILSPTRELCMQIGKDLQNYAKYRSDIRVACVYGGADIRKQIRELDRGVHVL 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRLCD I+ + + I ++AVVLDEADEML++GF++D+ FILD +P +R +FSAT Sbjct: 127 VATPGRLCDLIKREAVKIEQVRAVVLDEADEMLNMGFKEDLNFILDETPAERNTYLFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + +AKNY ++ ++ +N+ + + V D + ++ AI Sbjct: 187 MPREVERIAKNYLRNPQEISTGKKNQGADTVTHEYYQVLARDCYETLHRVIDCAPDMYAI 246 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + L + AL G+LSQ +R + + R R +V +ATDVAARG+ Sbjct: 247 IFTRTKMDAREIARKLQKDGIDCDALHGDLSQAQRDDVMDRFRAKRLKVLVATDVAARGL 306 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ +L VI+ L + E+ HRSGRTGRAGR+G+SV +I + + R+ Sbjct: 307 DVDNLTHVINYNLPEDVESYTHRSGRTGRAGREGISVAIINSKEKGKLRRIENILKKKFQ 366 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGFLRIHR 425 ++ P E + R D + + + K L K + E++ + Sbjct: 367 YKEVPGGEEVC-RAQLSYYADKILMTEPKETLDKYRHELFEKFEELSKEELIQKMMSYEF 425 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQKAEARW 483 L ++ V+ ++ D R D + G R N + ++ FS++VG + R Sbjct: 426 GKLL--KKYASVADLNLSDEERHDGGRREKRRGERKNEESVTFTTFSVNVGKEDGFTPRD 483 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 LM ++ ++ IG+IR+ + T EV G++ Sbjct: 484 LMTIINENAPRKGLEIGSIRIFGNNTKFEVDVRGIN 519 >gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus thermophilus ND03] Length = 528 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 202/348 (58%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL + E Sbjct: 7 NLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+ P++R+ L+F Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI + + KD V I ++ + ++D + V ++ + + ++ + Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ ++G+ + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDIMVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348 >gi|149177361|ref|ZP_01855966.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797] gi|148843886|gb|EDL58244.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797] Length = 606 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 201/379 (53%), Gaps = 7/379 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I + L E GY T +Q + L +D++ AQTG+GKT AF L L S + E Sbjct: 18 QPILDVLVELGYDTPTPIQAQTIPHLLEGRDLVGQAQTGTGKTAAFALPLLSKIDLE--- 74 Query: 69 FSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AP L +APTRELA+QVG E+ G+ V GG + + L+ G H+ Sbjct: 75 ---LRAPQVLVLAPTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKGQLQPLKRGVHV 131 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DH+R L + +L+ +VLDEADEML +GF DD+E+IL+ +P + +FSA Sbjct: 132 VVGTPGRVMDHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQTPDNHQTALFSA 191 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ AI +A NY K + + + R I R L + +A+ IL Sbjct: 192 TMPEAIRRIAGNYLKSPQEITVKDKTRTADTIRQRYWLAKGHHKLDALTRILEAEETDGV 251 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T++ + ++ L F L+G++ Q++R + ++ G + IATDVAARG Sbjct: 252 IIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVNIVIATDVAARG 311 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ + VI+ +L + E +HR GRTGRAGR G ++ + QR + R + + Sbjct: 312 LDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAIMFVSPREQRSLSGIERAIKLKI 371 Query: 368 VWEPAPSVEAIRERDAQRI 386 PS+ I +R +R Sbjct: 372 ERMELPSINQINKRRTERF 390 >gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris SK11] gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp. cremoris SK11] Length = 551 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/352 (37%), Positives = 198/352 (56%), Gaps = 7/352 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + + I + L+E GY T +QE + L +DVL AQTG+GKT AFGL Sbjct: 1 MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + AEN A AL IAPTRELAVQ EL G+ V GG S+ ++ + Sbjct: 61 EKINAEN------PAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ GAHIVVGTPGRL D I+ K + + L+ ++LDEADEML++GF +DI FI++ +P+ Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEN 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + K+ + IA++ ID V ++ + + +L Sbjct: 175 RQTLLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + AIVF T+ V + L ++ + G+L Q +R L+ + G V + Sbjct: 235 DVERPQLAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ATDVAARG+D+ + V + +++ + E+ +HR GRTGRAG+ G SV + N Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYN 346 >gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066] gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066] Length = 528 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 202/348 (58%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL + E Sbjct: 7 NLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+ P++R+ L+F Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI + + KD V I ++ + ++D + V ++ + + ++ + Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ ++G+ + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348 >gi|251796178|ref|YP_003010909.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2] gi|247543804|gb|ACT00823.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2] Length = 578 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 211/378 (55%), Gaps = 18/378 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP++ + L G + T VQ+ + L +DV+ AQTG+GKT+AF L + + + Sbjct: 11 IPELT-DVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPILQRIDIDK 69 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 ++ AL + PTRELA+Q+ EL+ L A G V GG V + R L N H Sbjct: 70 EQVQ------ALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQIRKLNNSPH 123 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL DH+R + +N+ LK +VLDEAD+ML +GF +++ I+D +P+ R+ ++FS Sbjct: 124 IVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTMLFS 183 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I LA+NY K V + I S N +I + R A+++++ Sbjct: 184 ATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQRPYL 243 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A++FC T+ + K L + F+ L G+L+Q +R ++ RD + ++ +ATDVAAR Sbjct: 244 AVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATDVAAR 303 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----------IPQNMQRR 355 G+D+ + V + ++ ++ E +HR GRTGRAG++G ++ + I +++ Sbjct: 304 GLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIERSINAI 363 Query: 356 AERLFREANVSVVWEPAP 373 ER EA+ ++V AP Sbjct: 364 LERRTIEADGTIVKNTAP 381 >gi|311743209|ref|ZP_07717016.1| DeaD protein [Aeromicrobium marinum DSM 15272] gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272] Length = 567 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 173/559 (30%), Positives = 267/559 (47%), Gaps = 35/559 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY T +Q + P L +DV+ AQTG+GKT AF L + +R P A Sbjct: 21 LAGLGYETPTPIQAQAIGPLLDGRDVVGLAQTGTGKTAAFALPIL-------ERLDPDRA 73 Query: 75 PL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELA+QV A+T G+ + GG + R LQ GAH+VVGTP Sbjct: 74 ETQALILAPTRELALQVSDAFATYAARTPGLRILPVYGGQGYAAQLRGLQRGAHVVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L +S L +VLDEADEML +GF +D+E IL +P+ +++ +FSAT+ PA Sbjct: 134 GRVIDHLDRGSLELSGLDHLVLDEADEMLTMGFAEDVERILADTPEDKQVALFSATMPPA 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK Y D V V + R + + R + V + +A+ +L I+F Sbjct: 194 IRRLAKKYLNDPVDVATPAATRSTTTVRQRWISVPHHGKFDALTRLLEVENGDGMIIFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L F AL+G+L Q +R + ++ G + +ATDVAARG+D+ Sbjct: 254 TKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLKGGSLDILVATDVAARGLDVDR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ + E+ +HR GRTGRAGR G +V + +R + + + V Sbjct: 314 ITHVINHDIPHDAESYVHRIGRTGRAGRSGEAVLFVTPRERRMLSAIEKVSGRPVEEMSV 373 Query: 373 PSVEAIRERDAQRI-------LQDPLFLDSIQGDEKKMVDVLLAKH--DPEKIAAGFLRI 423 PS E + + ++R L P F +++V+ A H D +AA + Sbjct: 374 PSAEEVNTQRSERFAAAITESLGSPQFHPF-----RRLVEEYAAAHEVDMTDVAAALAVM 428 Query: 424 H---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQK 478 + + P+ PV R+R D R + W + L+VG + + Sbjct: 429 NTDDKEFFLRPD--PPVKERPKRERTERDDRPRRDVQEQAGQEAPEGWRRYRLAVGKRHR 486 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLK 534 ++ + G+ R G I + + VE+ AD D L T K I L+ Sbjct: 487 IGPSAIVGAMANEGGLRRTDFGKITIGVEHAVVELPADLPDAVFDALADTRISGKRIDLR 546 Query: 535 YLGGEKPDF-RGYKSSGFK 552 G P RG +S G++ Sbjct: 547 VDDGPPPARQRGPRSGGYQ 565 >gi|330501428|ref|YP_004378297.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01] gi|328915714|gb|AEB56545.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01] Length = 458 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 202/366 (55%), Gaps = 12/366 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q A L L+ +D++ A+TGSGKT AFG+ L L N R+ A Sbjct: 19 LAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHPL---NPRYFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A + V GGV + L++GAH++VGTPG Sbjct: 76 ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEHGAHVIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + L +VLDEAD MLD+GF D I I++ +P +R+ L+FSAT I Sbjct: 133 RVQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARRQTLLFSATYPAGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA + + RV + + H D I+ R +A R A+ +LR+ + + FC Sbjct: 193 EQLAARFLRTPERVEVEA---MHDDDQIEQRFYEIAPGQRMQAVSILLRHFRKQPVVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR L AL G+L Q+ER L + + V +ATDVAARG+D+ Sbjct: 250 ATRQQCDELAAQLEAEKISAAALHGDLEQRERDQILALFANRSLSVLVATDVAARGLDIA 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 LE+VI+ ELS + E +HR GR+GRAG KG+++ ++ RA+ + ++ W P Sbjct: 310 GLEMVINVELSRDAEVHIHRIGRSGRAGDKGLALSLVAPPEASRAQAIETLQGKTLAWYP 369 Query: 372 APSVEA 377 P+ ++ Sbjct: 370 LPATKS 375 >gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321] gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321] Length = 524 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|327538177|gb|EGF24861.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula baltica WH47] Length = 449 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 200/346 (57%), Gaps = 6/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ ++ A+ + G+ + +Q A++ L KDV+ A+TG+GKT AF + + L Sbjct: 47 DLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQL--- 103 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D P A+ I PTRELA QV E E L + +AV GG +++R+ R L+NG Sbjct: 104 -DSLEDCRDPQAIVIVPTRELADQVAAEAERLASGVPTEIAVLSGGKNMNRQLRQLENGT 162 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DH++ L +++ VVLDEAD MLD+GFR IE I+ P+ R+ L+ Sbjct: 163 QLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLLL 222 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P + LA++Y + V ++ + I+ R +A D+ + ++L+ + Sbjct: 223 SATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESLLKREKPE 282 Query: 246 NAIVFCSTRASVSRFTKVLA-EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+FC T+ R + L+ E+ A+ G+L Q+ER LQ +RDG + +ATDV Sbjct: 283 QAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVATDVV 342 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349 RGID+ + +++ ++ + ++ +HR GRTGR GR G++ FV+P Sbjct: 343 GRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVP 388 >gi|238919400|ref|YP_002932915.1| ATP-dependent RNA helicase DbpA [Edwardsiella ictaluri 93-146] gi|238868969|gb|ACR68680.1| ATP-independent RNA helicase DbpA [Edwardsiella ictaluri 93-146] Length = 457 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 203/361 (56%), Gaps = 10/361 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY +T VQ A L L KDV A+TGSGKT AFGL L + + RF S Sbjct: 18 LNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHI--DASRFITQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV L L Y V+ +C GGV +R L + HI+V TP Sbjct: 75 ---LVLCPTRELADQVAAALRRLARYMPNIKVLTLC-GGVPFGAQRDSLIHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + L++ L+ ++LDEAD MLD+GF D ++ ++ +P+KR+ L+FSAT Sbjct: 131 GRLLDHLKKETLSLEALQTLILDEADRMLDMGFADALDEVISWAPEKRQTLLFSATWPAE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +++ Q+D + + I ++ + ++ R V+ S + + +L H + +VFC+ Sbjct: 191 IAAISRRIQRDPLTIEIDTDGELPA-VEQRFYEVSRSGKTGLLQALLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E V+ L G++ Q++R L +G +RV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVYDALEESGQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKA 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L +VI+ ELS +PE +HR GRT RAG G+++ + +RA L V + W+P Sbjct: 310 LAMVINYELSWDPEVHVHRIGRTARAGASGLAISLCAPEEAQRANALEEMLGVRLQWQPQ 369 Query: 373 P 373 P Sbjct: 370 P 370 >gi|332881684|ref|ZP_08449332.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680323|gb|EGJ53272.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 679 Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 142/413 (34%), Positives = 224/413 (54%), Gaps = 17/413 (4%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGL 56 MK FE + I +A+ E GY N VQE ++ P L DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEELGVSAEIRQAIEEMGYENPMPVQEEVI-PYLLGVNNDVVALAQTGTGKTAAYGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 + + A + AL ++PTREL +Q+ +LE Y+K GV V GG ++ Sbjct: 60 PVLQKVDATRN------VTQALILSPTRELCLQIADDLEN-YSKYLPGVRVLPVYGGANI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ G ++V TPGRL D + ++ H++ VVLDEADEML +GF + I+ IL Sbjct: 113 EPQIRTLRKGVQVIVATPGRLIDLMERGAASLEHVENVVLDEADEMLSMGFTESIDKILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P+ L+FSAT+S I ++K Y ++A + + S N +++ +V D+ A Sbjct: 173 GVPENHNTLLFSATMSREIERISKKYLREAKEIVVGSRNEGAETVNHVYYMVHAKDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ AI+FC TR L + + +L G+LSQQ+R +Q R R Sbjct: 233 LKRIVDYYPKIYAIIFCRTRMETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHR 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + +ATDVAARG+D+ DL VI+ + + EN HRSGRTGRAG+KG S+ ++ + Sbjct: 293 VQFLVATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERS 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + + V PS + I + +++ D ++ ++ DE+++ L Sbjct: 353 KIREIEKVIGKEFVKGEMPSGKEICAKQLYKVIDD---IERVEVDEEEIEQFL 402 >gi|268591855|ref|ZP_06126076.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131] gi|291312828|gb|EFE53281.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131] Length = 457 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 136/361 (37%), Positives = 200/361 (55%), Gaps = 8/361 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E GY+N+T +Q A L P L KDV A+TGSGKT AFGL L + A+ F S Sbjct: 18 LQELGYLNMTQIQAAALPPILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAK--LFKTQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV EL L A + + GGV +R L + AHI+V TPG Sbjct: 75 ---LVLCPTRELADQVANELRRLARAIPNIKILTLCGGVPFSVQRDSLAHAAHIIVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + + + L+ +VLDEAD MLD+GF DIE I+D +P R+ L+FSAT I Sbjct: 132 RLLDHLNRETVQLDALQTLVLDEADRMLDMGFMPDIETIIDYAPINRQTLLFSATWPEEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +++ Q + + I S + + ++ + VA ++ + +L + +VFC+T Sbjct: 192 ARISQQIQNNPQTIEINSVDELPA-VEQQFYEVARHEKIELLQKLLSREQPASCVVFCNT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L V+ L G++ Q+ER L +G +RV +ATDVA+RG+D+ L Sbjct: 251 KKDCQAVYDALTASKQSVLVLHGDMEQRERDQTLVRFANGSSRVLVATDVASRGLDIKAL 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E+VI+ ELS +PE +HR GRT RAG G+++ + +RA L N+ + W+ P Sbjct: 311 EMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLNMKLNWQTEP 370 Query: 374 S 374 + Sbjct: 371 T 371 >gi|51595988|ref|YP_070179.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP 32953] gi|186895088|ref|YP_001872200.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis PB1/+] gi|51589270|emb|CAH20891.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953] gi|186698114|gb|ACC88743.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis PB1/+] Length = 460 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 137/365 (37%), Positives = 204/365 (55%), Gaps = 14/365 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A+L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 19 LNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSATYPS 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ + V + + + + I+ R ++++L Y+ + +VFC Sbjct: 191 GIEQISARVQRQPLNVEVGDTDEEPA-IEQVFFETTREKRLPLLISVLSYYQPASCVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DLELVI+ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 310 DLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMV-RAHTIEDYLQIKLKWT 368 Query: 371 PAPSV 375 PA V Sbjct: 369 PAEQV 373 >gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris NZ9000] Length = 551 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/352 (37%), Positives = 198/352 (56%), Gaps = 7/352 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + + I + L+E GY T +QE + L +DVL AQTG+GKT AFGL Sbjct: 1 MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + AEN A AL IAPTRELAVQ EL G+ V GG S+ ++ + Sbjct: 61 EKINAEN------PAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ GAHIVVGTPGRL D I+ K + + L+ ++LDEADEML++GF +DI FI++ +P+ Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEN 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + K+ + IA++ ID V ++ + + +L Sbjct: 175 RQTLLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + AIVF T+ V + L ++ + G+L Q +R L+ + G V + Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ATDVAARG+D+ + V + +++ + E+ +HR GRTGRAG+ G SV + N Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYN 346 >gi|257466549|ref|ZP_05630860.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC 25563] gi|315917704|ref|ZP_07913944.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC 25563] gi|313691579|gb|EFS28414.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC 25563] Length = 528 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 162/514 (31%), Positives = 259/514 (50%), Gaps = 41/514 (7%) Query: 11 IGE----ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAE 65 IGE ALS++GY T +Q + L EKD++ AQTG+GKT AF L + + Sbjct: 15 IGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPILENI-EH 73 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D+ + + PTRELA+QV E+ L + + + GG S+ +R+ L+NGA Sbjct: 74 QDKIQ------GIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLRNGA 127 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ D I K L + LK +LDEADEML++GF +++E IL+++ + +RML F Sbjct: 128 DIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRMLFF 187 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +AK + KD + + + D V D+ A+ I+ Sbjct: 188 SATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRIIDLAEDF 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ V+ L + + L G++ Q R L+ + + + +ATDVAA Sbjct: 248 YGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILVATDVAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RGID+ DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + Sbjct: 308 RGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKIVK 366 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPEKIAAG 419 + E P V+ + + +I +D +D I G+ KK+ LL K + E I A Sbjct: 367 TEIRKEEVPEVKDVIQAKKFQIQKD---IDEILGEGEYDKFKKLAQDLLKKEEAENIVAS 423 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 L++ A E++ S + + S VGGG F +++G K Sbjct: 424 LLKL------AYEDVLDES------NYNEISSTKSVGGGKARLF-------VALGRKDGM 464 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 A+ L+ + + + + + I + V +F+ V Sbjct: 465 TAKKLVEKVMKVAKVQDKKIRNVEVYEAFSFITV 498 >gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Bf] gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Bf] Length = 524 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 155/520 (29%), Positives = 267/520 (51%), Gaps = 44/520 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ G+ +++QE + L DV+ AQTG+GKT+AFG + S L + Sbjct: 10 NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + AL + PTRELA+Q+ EL+ L Y+KT V+ GG S+ R+ +D+++ Sbjct: 70 EKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGR+ DHI + L + + ++LDEADEML++GF +DIE I++S+ ++++ + Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I LA NY +KD + I ++ I V D+ A+ I+ Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSE 243 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++AI+FC T+ V + + + V + G++SQ +R N L+ + +ATD Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 VAARGID+ ++ VI+ ++ + E+ +HR GRTGRA ++G + V P+ + R+ ER+ Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415 + + + P++E I E+ +L D I+ ++ + MV L D + Sbjct: 364 TKS---KIKKKELPTLEDILEKKYDNLLND--IASKIEENKYEKFMPMVKTLEQNFDLSQ 418 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 ++A + + L S F + + R LSVG Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 K + L+ + ++ + IG I + TF++VS+ Sbjct: 456 KDSINVKSLLTFIQDAASVKNHEIGDIDILDKFTFMDVSS 495 >gi|237796237|ref|YP_002863789.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Ba4 str. 657] gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Ba4 str. 657] Length = 524 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 155/520 (29%), Positives = 267/520 (51%), Gaps = 44/520 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ G+ +++QE + L DV+ AQTG+GKT+AFG + S L + Sbjct: 10 NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + AL + PTRELA+Q+ EL+ L Y+KT V+ GG S+ R+ +D+++ Sbjct: 70 EKK----KGVKALVLTPTRELALQIKDELKRLSEYSKTKVLPVY--GGESIERQIKDIKS 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGR+ DHI + L + + ++LDEADEML++GF +DIE I++S+ ++++ + Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183 Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I LA NY +KD + I ++ I V D+ A+ I+ Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSE 243 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++AI+FC T+ V + + + V + G++SQ +R N L+ + +ATD Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 VAARGID+ ++ VI+ ++ + E+ +HR GRTGRA ++G + V P+ + R+ ER+ Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415 + + + P++E I E+ +L D I+ ++ + MV L D + Sbjct: 364 TKS---KIKKKELPTLEDILEKKYDNLLND--IASKIEENKYEKFMPMVKTLEQNFDLSQ 418 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 ++A + + L S F + + R LSVG Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 K + L+ + ++ + IG I + TF++VS+ Sbjct: 456 KDSINVKSLLTFIQDAASVKNHEIGDIDILDKFTFMDVSS 495 >gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1] gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1] Length = 471 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 235/431 (54%), Gaps = 29/431 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+S+ G+ T +Q A + L+ +DV+ AQTG+GKT AFG+ L + ND Sbjct: 18 KAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFGIPLIEKIDMNND----- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A A+ +APTRELA+QV EL + + V V GG + R+ R L+ HI+VGTP Sbjct: 73 -AVQAIVVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIERQIRALKKHPHIIVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI+ + L + H+ VVLDEADEML++GF +DIE IL P +R+ L+FSAT+ Sbjct: 132 GRILDHIQRRTLRLQHVHTVVLDEADEMLNMGFVEDIEAILSHVPTERQTLLFSATMPEP 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + V + ++ +I+ + + + + + +L + AIVF Sbjct: 192 IRRIAERFMNNPELVRVKAKEMTVPNIEQYYIEIQEKKKFDTLTRLLDIQSPELAIVFGR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L + + G+LSQ +R + L+ ++G + +ATDVAARG+D+ Sbjct: 252 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIDILVATDVAARGLDISG 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 + V + ++ +PE+ +HR GRTGRAG+ GM++ FV P+ + + Sbjct: 312 VTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQLHH-------------- 357 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431 +E +R +R ++ P ++++G ++ ++ LLA + +A F + RA Sbjct: 358 ---IEKTTKRKMER-MKPPTLDEALEGQQRAAIEKLLATIEHNNLA--FYK--RAAEELL 409 Query: 432 EEITPVSLVSG 442 EE VSLV+ Sbjct: 410 EEHDSVSLVAA 420 >gi|165975989|ref|YP_001651582.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876090|gb|ABY69138.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 619 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 144/419 (34%), Positives = 227/419 (54%), Gaps = 10/419 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +A+++ G+V + +Q+ + L +DVL AQTGSGKT AF L L LA+ Sbjct: 13 LPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 D P L +APTRELA+QV E GV V GG + R L+ G+ Sbjct: 69 D--PTKRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGS 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S L+++VLDEADEML +GF DD+E ++ P+ + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + + +D V I + R DI LV +++A++ L Sbjct: 187 SATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ T++ + ++ AL+G+++QQ R L ++ GR + +ATDVAA Sbjct: 247 AAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362 RGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L ++ Sbjct: 307 RGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKK 366 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 V + A R + + L ++ + + D+ A D E++AA + Sbjct: 367 PIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 425 >gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 595 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 165/532 (31%), Positives = 257/532 (48%), Gaps = 37/532 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + +Q + L D AQTG+GKT AFGL + D+ +P Sbjct: 16 KAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPIL-------DKLTPE 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA+QV EL L A K GV + GG + R+ R L G +VVGT Sbjct: 69 RNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALAKGVQVVVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH++ L +S VLDEADEMLD+GFR+DIE IL+ +P + ++FSAT+ P Sbjct: 129 PGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQRVLFSATVPP 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L+K + ++ + +A + I+ V + +A+ +L A+VFC Sbjct: 189 AIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLLDSRAFHKALVFC 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 ST+ T L + +Q +L G L+Q +R +Q R V +ATDVAARG+D+ Sbjct: 249 STKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVATDVAARGLDVD 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 D++ VI+ ++ + E +HR GRTGRAGR G + + + + R + Sbjct: 309 DVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDIIRCTRARITEGR 368 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEK-------KMVDVLLAKHDPE------KIAA 418 PS+ RD I L + Q E +V+ LA P+ ++A Sbjct: 369 LPSL-----RDVDNIRTSRLLDEVRQTVESGTLERWLTLVEDFLATQFPDGEITSRDVSA 423 Query: 419 GFLRI----HRAGLCAPEEITPVSLVSGRD-RFRDDSRAFKVGGGS------RDNFKGSS 467 ++ P + P++L R + RD + + G R+N + Sbjct: 424 ALFKLLMQRDFGDQDKPLDQDPLALEPRRQYKDRDGAPGRREPGKPGARPQRRENDGPMT 483 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 L+VG KA R L+ + +GI+ + IGAI + + VE++ + D Sbjct: 484 RLHLNVGHTHKATPRELVGAITGETGISSRHIGAISINKNFCVVEIAQEMAD 535 >gi|46143724|ref|ZP_00134573.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208057|ref|YP_001053282.1| cold-shock DEAD box protein A-like protein [Actinobacillus pleuropneumoniae L20] gi|190149888|ref|YP_001968413.1| cold-shock DEAD box protein A-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303252206|ref|ZP_07338374.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|126096849|gb|ABN73677.1| cold-shock DEAD box protein A-like protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915019|gb|ACE61271.1| cold-shock DEAD box protein A-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648989|gb|EFL79177.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 619 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 144/419 (34%), Positives = 227/419 (54%), Gaps = 10/419 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +A+++ G+V + +Q+ + L +DVL AQTGSGKT AF L L LA+ Sbjct: 13 LPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 D P L +APTRELA+QV E GV V GG + R L+ G+ Sbjct: 69 D--PTKRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGS 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S L+++VLDEADEML +GF DD+E ++ P+ + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + + +D V I + R DI LV +++A++ L Sbjct: 187 SATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ T++ + ++ AL+G+++QQ R L ++ GR + +ATDVAA Sbjct: 247 AAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362 RGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L ++ Sbjct: 307 RGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKK 366 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 V + A R + + L ++ + + D+ A D E++AA + Sbjct: 367 PIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 425 >gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311] gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311] Length = 528 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 202/348 (58%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL + E Sbjct: 7 NLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIHTE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+ P++R+ L+F Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI + + KD V I ++ + ++D + V ++ + + ++ + Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ ++G+ + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348 >gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA17545] Length = 524 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase domain-containing protein [Kangiella koreensis DSM 16069] gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM 16069] Length = 598 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 135/395 (34%), Positives = 222/395 (56%), Gaps = 12/395 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ +++ + GY + +Q A + + KD++ AQTG+GKT AF L + S L A+++ Sbjct: 17 PAVL-KSIKQVGYEQPSPIQSASIPVLMAGKDIIGQAQTGTGKTAAFALPMLSRLDAKDN 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 L +APTRELA+QV + YAK G+ V GG + R L+ GA Sbjct: 76 NTQ------LLVLAPTRELAIQVAEACQS-YAKNMPGLNVLPIYGGQKYDIQLRQLKRGA 128 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGR+ DHIR L + +LKA+VLDEADEML +GF DD+E++L +PK R++ +F Sbjct: 129 QIVVGTPGRVMDHIRRGTLKLDNLKALVLDEADEMLRMGFIDDVEWVLGHTPKTRQIALF 188 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +A+ Y + + I ++ + I+ R LV+ + +A+ +L Sbjct: 189 SATMPKEIKKVAEKYLHEPEHIKIQTKTSTATTINQRYWLVSGIHKLDALTRVLETEEFD 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + + L F+ AL+G+++Q R ++ ++ G+ + IATDVAA Sbjct: 249 GMIIFVRTKIATTELADKLTARGFRAEALNGDIAQTTRERIVEKLKKGQIDILIATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ + E+ +HR GRTGRAGR G ++ + +R + + R N Sbjct: 309 RGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAHRERRMLKAIERATNQ 368 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400 + PS++ I E+ R + L +I+ D+ Sbjct: 369 PITEMQMPSIDNINEQRMSRFERK--VLSTIENDD 401 >gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei F0415] gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei F0415] Length = 521 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 208/354 (58%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E ++ + I +A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELHLAEDILQAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + +N+ AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIAIDNNVIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+ P + Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISHVPDE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ AI + + K+ V IA++ +++ + V ++ + + ++ Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLI 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L ++ + G+L Q +R ++ ++ + + Sbjct: 235 DIEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G SV FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEM 348 >gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565] gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565] Length = 459 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 132/351 (37%), Positives = 203/351 (57%), Gaps = 8/351 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + E L+ GY+ +T +Q L L KD++ A+TGSGKT AFGL L + L Sbjct: 10 NLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLAKLNVN 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124 AL + PTRELA QV +E+ L A V + GG + L G Sbjct: 70 RLEVQ------ALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTPTAPQSATLSFG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHI VGTPGR+ H+ L +S LK +VLDEAD MLD+GF +DI ++ +P++R+ L+ Sbjct: 124 AHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEDINRVISYAPERRQTLL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT I +++ Q++ V V++ S + + S I+ + V R +A+ +L ++ Sbjct: 184 FSATYPEGIAQMSRGVQRNPVEVSVESLH-EGSAIEQKLYEVPAGQRLDALTWLLSHYQP 242 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VFC+T+ + + LA F +AL+G+L Q+ER L +G A + +ATDVA Sbjct: 243 SSCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDVA 302 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ARG+D+ +L VI+ EL+ +PE +HR GRTGRAG++G+++ + N +R Sbjct: 303 ARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQR 353 >gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109] gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109] Length = 778 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 171/544 (31%), Positives = 280/544 (51%), Gaps = 57/544 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V +A+ G+ + +QE + + +DV+ AQTG+GKT AF L + S L ++ Sbjct: 140 PEVF-DAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSRLNLKSR 198 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 + P AL +APTRELA+QV E K G V + I GG + L+ GAH Sbjct: 199 K------PQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGAH 252 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH++ L+IS L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +FS Sbjct: 253 VVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALFS 312 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ AI L+K Y V + S R +I+ ++V ++ +A+ IL Sbjct: 313 ATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDFDA 372 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ + L ++ A++G+++Q +R + ++DGR + +ATDVAAR Sbjct: 373 MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 432 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANV 365 G+D+ + V + ++ + E+ +HR GRTGRAGR G +V FV P+ +RR + A Sbjct: 433 GLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPR--ERRMLKSIERATK 490 Query: 366 SVVWE-PAPSVEAIRE-------RDAQRILQDP---LFLDSI----QGDEKKMVDVLLAK 410 S + E PSV+ + E R+ + L+DP +F D + + + + D+ A Sbjct: 491 SRLNEIELPSVDQVNEARKAKFNRELTKNLEDPQVSVFRDLVTTYAEANGVTLEDIAAAL 550 Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGGGSRDNFK---- 464 + FL E P R DR+ D A + GGG+ +F+ Sbjct: 551 AAGAQGGEKFLM----------EEAPRREHKRRSDDRYGD---ADRRGGGAYRSFEERFN 597 Query: 465 ----------GSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512 G+ + LSVG +Q+ ++ L G+N + G I + + + VE Sbjct: 598 KPAPRFTDRNGNEMEVYRLSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVE 657 Query: 513 VSAD 516 + AD Sbjct: 658 LPAD 661 >gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394] gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394] Length = 539 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFIEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD 2210633] gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030] gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034] gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466] gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037] gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD 2210633] gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466] gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034] gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037] gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030] Length = 643 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 163/521 (31%), Positives = 266/521 (51%), Gaps = 41/521 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L D L AQTG+GKT AF L L + L + + Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKLDLDQRK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAH+VVGTP Sbjct: 75 -PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKNGAHVVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I + L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P Sbjct: 134 GRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + +D V V++A +N + + +V ++D A+ +L +IVF Sbjct: 194 LKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV-- 367 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQL 373 Query: 368 ----------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417 + + A +EA +E A LD +K+ L + DP +A Sbjct: 374 PLRDQVAEARLNKLAAELEAEKEHKA---------LDKFAELVEKLQTSL--EIDPAMLA 422 Query: 418 AGFLRIH---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLS 472 A L+ R E+ P+ RD+ + + G +F W + L Sbjct: 423 AMLLKRQQGKRPLFYIGED--PMVEAIERDK-QRRKERREGGREGGRSFNNQDWDTYQLQ 479 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 VG +Q + + ++ L G+ + SIGAI++ TFV++ Sbjct: 480 VGREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 520 >gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA] gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA] Length = 523 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|19705271|ref|NP_602766.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713234|gb|AAL94065.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 528 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 154/509 (30%), Positives = 252/509 (49%), Gaps = 35/509 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I + LS++GY + T +Q + L+ +KD++ AQTG+GKT AF L + + F Sbjct: 19 ILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENF 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VV Sbjct: 72 ENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D I K L ++ LK +LDEADEML++GF +DIE IL + + +RML FSAT+ Sbjct: 132 GTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATM 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNA 247 I +AKN+ K+ + + S R+ + + +++RD A+ I+ Sbjct: 192 PDEIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYG 249 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARG Sbjct: 250 IIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARG 309 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS 366 ID+ DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + Sbjct: 310 IDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKE 368 Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424 + E P V+ + + RI+ D + +D+ KK+ LL D E I A L++ Sbjct: 369 IKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLS 428 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 + + +S V D G + +++G K + L Sbjct: 429 YSDVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKL 469 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + + + I + I V +FV V Sbjct: 470 VEFIIKKAKIKQSYIKNAEVYEGFSFVSV 498 >gi|303251558|ref|ZP_07337732.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649556|gb|EFL79738.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 619 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 144/419 (34%), Positives = 227/419 (54%), Gaps = 10/419 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I +A+++ G+V + +Q+ + L +DVL AQTGSGKT AF L L LA+ Sbjct: 13 LPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 D P L +APTRELA+QV E GV V GG + R L+ G+ Sbjct: 69 D--PTKRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGS 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHIR L++S L+++VLDEADEML +GF DD+E ++ P+ + +F Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + + +D V I + R DI LV +++A++ L Sbjct: 187 SATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+F T+ T++ + ++ AL+G+++QQ R L ++ GR + +ATDVAA Sbjct: 247 AAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362 RGID+ + LV++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L ++ Sbjct: 307 RGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKK 366 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 V + A R + + L ++ + + D+ A D E++AA + Sbjct: 367 PIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 425 >gi|302326490|gb|ADL25691.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp. succinogenes S85] Length = 483 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 203/346 (58%), Gaps = 7/346 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ +P+ L E G+ L VQ + L +D+LV ++TGSGKT A+ L L ++ Sbjct: 54 FDMLPEEQKAILREHGWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIV 113 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 ++ P AL + PTREL +QV E E L TG+ GGVS + + L++ Sbjct: 114 RDH------PYPQALILVPTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALRS 167 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G H++V TPGRL DHI+ +++ ++ +VLDEADEML +GF D++ I PK Sbjct: 168 GVHVIVATPGRLMDHIQRGNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISCT 227 Query: 184 MFSATISPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 M+SATI + +LA+ +Q+ A ++++ + +++++R + ++D+ + +L Y+ Sbjct: 228 MYSATIPQTVKSLAREFQRPGADFLSLSYDKVIANNLEHRYYTCDVMEKDSMTIKVLEYY 287 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++ ++FC+ + VS +VL+ + F+V ALSG+++Q R L RD + ++ I TD Sbjct: 288 NPESCMIFCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICTD 347 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI + ++ E +HRSGRT RAGR G+ + +I Sbjct: 348 VAARGIDVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLI 393 >gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM 4252] Length = 505 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 143/436 (32%), Positives = 237/436 (54%), Gaps = 33/436 (7%) Query: 5 ENIPQVIGEALSER--------GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56 E +P+V L ER G+ L VQ L L +DV+V +QTGSGKT AF L Sbjct: 35 EPLPEVSLAELPERMQQAARAIGWTELMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLL 94 Query: 57 ALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVA------VCI 109 L +R P+ + AL + PTRELA Q+ E + KTGV A + Sbjct: 95 PL-------FERLDPSRGQVQALILTPTRELARQISEAFEQM--KTGVSGAQSLRAVLVY 145 Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169 GGV + + L+ GA +V+GTPGR+ D I L + L+ +V DEADEML +GF + Sbjct: 146 GGVRYGPQLKALEQGAQVVIGTPGRILDLIERGALRLGALQVLVFDEADEMLSMGFYPAM 205 Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229 + P++R MFSAT+ P + LA+ + KD V+++++ I++R +V Sbjct: 206 RQLKRYLPRERNTAMFSATMPPRVQALAREFLKDPAFVSLSTDRIAAETIEHRYFIVPPM 265 Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 ++D A+V ++ ++AI+F +T+ V + L + + A++G+L Q++R + Sbjct: 266 EKDRALVQLIELENPESAIIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDR 325 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 +R G+ R+ +ATDVAARGID+ DL V ++ +PE +HRSGRTGR G++G ++ ++ Sbjct: 326 LRKGQLRLLVATDVAARGIDISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVT 385 Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVDV 406 + R + R+ ++ + P+ E + ER A+R +L+D + ++ D +++ Sbjct: 386 PLEEARLRAIARQYDIPLEKGTLPTPETVAERVAERAVALLED-RYRETTSLDRERIARF 444 Query: 407 L-----LAKHDPEKIA 417 + LA+ +PE +A Sbjct: 445 VPLVEQLAQEEPELLA 460 >gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 518 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPDSRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTDLVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|315126148|ref|YP_004068151.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas sp. SM9913] gi|315014662|gb|ADT68000.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas sp. SM9913] Length = 607 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 157/545 (28%), Positives = 263/545 (48%), Gaps = 55/545 (10%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ E GY + +Q + L KDVL AQTG+GKT AF L L + + Sbjct: 11 NLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNI--- 67 Query: 66 NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQ 122 P+ P L + PTRELA+QV E YAK GV V GG S + L+ Sbjct: 68 ----DPSVKQPQILVLTPTRELAIQVAEAFEQ-YAKHTRGVEVLALYGGQSYSIQLSALR 122 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 GA I+V TPGRL DHI + L+A+VLDEADEML +GF DD+E I++ +P++++ Sbjct: 123 RGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQT 182 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I ++ Y + +V+I++ N S ++ + A ++ AIV L Sbjct: 183 CLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVE-QVFWNAHVHKNKAIVRFLEAE 241 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + AIVF TR + ++L F L+G+++QQ R + ++ G V IATD Sbjct: 242 QYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIATD 301 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ L LVI+ ++ + E +HR GRTGRAGR G ++ + N + + + R Sbjct: 302 VAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRH 361 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQ---------DPLFLDSIQGDEKKMVDVLLAKHDP 413 + P+ + + E+ + + D F + + + + +++ P Sbjct: 362 TKSEIAQVELPTAKVVEEKRINALQEKLTLALENKDITFFNEVAANMAQKLELA-----P 416 Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSL----VSGRDRFRDDSRAFKVGGGSRDNFKGSS-- 467 E +A LC ++ +P+ + + R+R + R + R N +G Sbjct: 417 EDLAGAL-------LCLAQQQSPIKVEEVKIQPRERNERNDRNPRSNDRGRRNERGGERA 469 Query: 468 ----------------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511 + + VG + + + ++ + + I+ + IG IR+ + V Sbjct: 470 ERKPRERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTV 529 Query: 512 EVSAD 516 ++ + Sbjct: 530 QLPQN 534 >gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860] gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860] Length = 536 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ G+ T +Q + L KDV+ AQTG+GKT AFGL + + + A+N Sbjct: 36 AVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQ--- 92 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L IAPTRELA+Q EL L + V GG + R+ R L++ HIVVGTPG Sbjct: 93 ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPG 149 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI + L + ++ +VLDEADEML++GF +DIE I+ P++R+ L+FSAT+ PAI Sbjct: 150 RLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAI 209 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + K V I ++ ID V ++ + + +L + IVF T Sbjct: 210 KNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT 269 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + L ++ + G+LSQQ+R + L+ ++G + +ATDVAARG+D+ + Sbjct: 270 KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGV 329 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 330 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 369 >gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] Length = 463 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 137/366 (37%), Positives = 206/366 (56%), Gaps = 18/366 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY ++T +Q L L +DV+ +TGSGKT AFGL L L + RF Sbjct: 19 LQSIGYAHMTPIQAQSLPHILAGRDVIGQGKTGSGKTAAFGLGLLQKLNVK--RFHVQ-- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV +E+ L A+T + V GG+ + L++GAHI+VGTP Sbjct: 75 --ALVLCPTRELADQVAKEIRKL-ARTIHNIKVLTLCGGMPFGPQLGSLEHGAHIIVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ +H+R L + +L +VLDEAD ML++GF++ ++ I+D +P+ R+ L+FSAT Sbjct: 132 GRIEEHVRKGALKLDNLTLLVLDEADRMLEMGFQEALDAIIDQTPQTRQTLLFSATFPRQ 191 Query: 193 ITTLAKNYQKDAVRVNIASEN-----RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 I ++A K V V + + + QH + V +DR A+ +LRY+ +A Sbjct: 192 IESIAGRVMKTPVMVQVEATHDSAVITQH----FYEVADDTADRQQALRRLLRYYQPTSA 247 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VFC+T+ L EH F +AL G+L Q+ER +L +G A + +ATDVAARG Sbjct: 248 VVFCNTKQDTRDVADDLREHGFSALALHGDLEQRERDQSLVRFSNGSASILVATDVAARG 307 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ L+ V + ++ + E +HR GRTGRAG GM+ + + ERL + + S+ Sbjct: 308 LDIEALDAVFNYHIARDTEVHVHRIGRTGRAGSHGMACSLYSAKEHFKVERLAKFLDQSL 367 Query: 368 VWEPAP 373 EP P Sbjct: 368 TGEPLP 373 >gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase, DEAD-box family [Streptococcus mitis B6] gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase, DEAD-box family [Streptococcus mitis B6] Length = 521 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + + ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIGTLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|302344868|ref|YP_003813221.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica ATCC 25845] gi|302149937|gb|ADK96199.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica ATCC 25845] Length = 640 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 152/446 (34%), Positives = 231/446 (51%), Gaps = 28/446 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I A+SE G+ + VQE ++ P L DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSEEIRRAISELGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + + + A+ ++PTREL +Q+ +L E+ + +A GG S+ Sbjct: 60 PLLQRI------DTSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASID 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L++G I+V TPGRL D + + ++ VVLDEADEML++GF++ I IL Sbjct: 114 TQIRQLRHGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTG 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P+ R L+FSAT+S + +AK Y D + + S N +++ +V D+ A+ Sbjct: 174 VPEDRNTLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 ++ ++ AIVFC T+ L + + AL G+LSQQ+R +Q R Sbjct: 234 KRLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLT 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ L + EN HRSGRTGRAG+KG S+ +I + + Sbjct: 294 QILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415 + RE + V PS E I + LF K M D+L D ++ Sbjct: 354 VRNIEREISKDFVDGTLPSPE--------EICKKQLF--------KTMDDILKTDVDEDQ 397 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVS 441 IA I+R +E+ +VS Sbjct: 398 IAPYMKDINRQFEYIDKEVVIKKIVS 423 >gi|160914649|ref|ZP_02076863.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991] gi|158433189|gb|EDP11478.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991] Length = 472 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 200/349 (57%), Gaps = 7/349 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q I EAL GY +VQEA++ L ++DV+V A+TGSGKT +F + + L+ N Sbjct: 8 LEQGIMEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPILQQLIW-N 66 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 ++ P +L +APTRELA+Q+ E + + AK + G +++DLQ H Sbjct: 67 EKL-----PQSLILAPTRELAMQIQTEFDQIGAKKRIKSLAIYGKFPFRFQKQDLQQRTH 121 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++ TPGR+ DH+R + S ++ VV+DEAD MLD+GF D++E +LD PKKR +FS Sbjct: 122 VICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTTALFS 181 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I LA + D + + + ++ H +I++ + D++ A++++L ++ Sbjct: 182 ATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALLHLLGKETVES 241 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+F T+ V +VL H +V L G L Q+ER L+ R G R+ +A+DVAAR Sbjct: 242 AILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILVASDVAAR 301 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 GID+ D+ VI+ + E +HR GRT R G ++ FV ++ ++ Sbjct: 302 GIDIADISHVINVDFPDKKETYIHRLGRTARKDTSGKAISFVTARDQEK 350 >gi|242239282|ref|YP_002987463.1| ATP-dependent RNA helicase DbpA [Dickeya dadantii Ech703] gi|242131339|gb|ACS85641.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703] Length = 457 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 203/362 (56%), Gaps = 10/362 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY+ +T +Q A L L KDV A+TGSGKT AFGL L L + RF+ S Sbjct: 18 LNALGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHL--DAGRFNTQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV EL L Y V+ +C GGV +R L + HI+V TP Sbjct: 75 ---LVLCPTRELADQVANELRRLARYMPNIKVLTLC-GGVPFSIQRDSLTHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ + +N+ L+ +VLDEAD MLD+GF D I+ ++ P +R+ L+FSAT A Sbjct: 131 GRLLDHLEKETVNLDALQTLVLDEADRMLDMGFADAIDAVIAHVPDQRQTLLFSATWPDA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q D + + I + + + ++ + V+ S + + + +L + +VFC+ Sbjct: 191 IAAISHRIQHDPLVIEIDTVDELPA-VEQQFYEVSRSGKLDLLQKLLSREQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L V+AL G++ Q++R L +G +RV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVYDALTASHQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKA 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 LE+V++ ELS +PE +HR GRT RAG G+++ + +RA L N+ + W P Sbjct: 310 LEMVVNFELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANALEEMLNLKLSWHPL 369 Query: 373 PS 374 P+ Sbjct: 370 PT 371 >gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329] Length = 643 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 163/521 (31%), Positives = 266/521 (51%), Gaps = 41/521 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L D L AQTG+GKT AF L L + L + + Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKLDLDQRK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAH+VVGTP Sbjct: 75 -PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKNGAHVVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I + L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P Sbjct: 134 GRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + +D V V++A +N + + +V ++D A+ +L +IVF Sbjct: 194 LKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV-- 367 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQL 373 Query: 368 ----------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417 + + A +EA +E A LD +K+ L + DP +A Sbjct: 374 PLRDQVAEARLNKLAAELEAEKEHKA---------LDKFAELVEKLQTSL--EIDPAMLA 422 Query: 418 AGFLRIH---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLS 472 A L+ R E+ P+ RD+ + + G +F W + L Sbjct: 423 AMLLKRQQGKRPLFYIGED--PMVEAIERDK-QRRKERREGGREGGRSFNNQDWDTYQLQ 479 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 VG +Q + + ++ L G+ + SIGAI++ TFV++ Sbjct: 480 VGREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 520 >gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16] gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase [Ralstonia eutropha H16] Length = 520 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 132/349 (37%), Positives = 200/349 (57%), Gaps = 9/349 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 ALSE+GY T +Q + L KD++ +AQTG+GKT F L + LL N SPA Sbjct: 52 ALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPIIQRLLPLANASASPA 111 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA QV + T + V GGV ++ + L+ G I+V T Sbjct: 112 RHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVAT 171 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +N+S ++ +VLDEAD MLD+GF D++ I++ P R+ L+FSAT SP Sbjct: 172 PGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSP 231 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG----AKNA 247 I LA +Y K V + +A N + ++ LV + A+V++L+ ++ Sbjct: 232 EIKRLASSYLKHPVTIEVARSNSTNENVRQMVYLVEDGHKQAAVVHLLKQRAEQGLSRQC 291 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF +++ SR + L A+ G+ +Q ER L+ + G +ATDVAARG Sbjct: 292 IVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKSGTIDALVATDVAARG 351 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQR 354 +D+PD+ V++ ++ + E+ +HR GRTGRAG G +S++V P N +R Sbjct: 352 LDIPDMPCVVNFDVPYSAEDYVHRIGRTGRAGASGDALSIYV-PGNDER 399 >gi|300933595|ref|ZP_07148851.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100] Length = 779 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 166/538 (30%), Positives = 271/538 (50%), Gaps = 52/538 (9%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA+ + G+ + +QE + + DV+ AQTG+GKT AF L + + R P+ Sbjct: 124 EAVKKVGFEAPSPIQEQTIPVLMEGNDVVGLAQTGTGKTAAFALPILA-------RIDPS 176 Query: 73 S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130 P AL +APTRELA+QV E G + + I GG + + L+ GAHIVVG Sbjct: 177 KRHPQALVLAPTRELALQVAESFESFATHLGGIHVLPIYGGQAYGIQLSGLRRGAHIVVG 236 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +FSAT+ Sbjct: 237 TPGRVIDHLNKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALFSATMP 296 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L+K Y D + + S R +I+ + V ++ A+ IL + I+F Sbjct: 297 AGIRRLSKQYLNDPQEITVKSTQRTSENIEQDYLFVNHRNKLEALTRILEVTEFEAMIMF 356 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L F A++G+++Q +R + ++DGR + +ATDVAARG+D+ Sbjct: 357 VRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDV 416 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369 + V + ++ + E+ +HR GRTGRAGR G ++ FV P+ +RR + A S + Sbjct: 417 DRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPR--ERRLLKAIERATKSTLN 474 Query: 370 E-PAPSVEAIRE------RDA-QRILQDP-------LFLDSIQGDEKKMVDVLLAKHDPE 414 E PSV+A+ + R+A Q L DP L + E M D+ A Sbjct: 475 EIELPSVDAVNDARKEKFREALQESLGDPQLGVFRELVTEFATSTETPMEDIAAALAAQI 534 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-------- 466 + FL + + + DR+ D+ R+ GGGS +F+ Sbjct: 535 QAGEDFL------MKEMPKEERPARRRREDRYGDEGRS---GGGSYRSFEERFNKEAPRV 585 Query: 467 --------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + + LSVG +Q+ ++ + G+N + G I + + + +E+ AD Sbjct: 586 TDRNGNELAVYRLSVGHRQRVRPGAIVGAIANEGGLNSRDFGRISIFSEHSLIELPAD 643 >gi|296135178|ref|YP_003642420.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] gi|295795300|gb|ADG30090.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] Length = 488 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/397 (35%), Positives = 224/397 (56%), Gaps = 10/397 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I A+S+ GY LT +Q + L +D++ +AQTG+GKT AF L + LL + Sbjct: 26 ILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQLLPLASTSV 85 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL +APTRELA QV L+ T + A GG+ + ++ +L+ G ++ Sbjct: 86 SPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKAELRTGVDLL 145 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ K +N+ ++ VVLDEAD MLD+GF D++ IL PK+R L+FSAT Sbjct: 146 VATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQRTTLLFSAT 205 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA++Y ++ + V +A N ++++ R V D+ +V +LR + I Sbjct: 206 FSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVYQVEEDDKRATLVQLLRDNPLPQVI 265 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF ++R R T++L + A+ G+ SQ ER L+ + G + +ATDVAARG+ Sbjct: 266 VFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQALVATDVAARGL 325 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLFR 361 D+ +L V++ ++ + E+ +HR GRTGRAG G+++ + ++++ +R F Sbjct: 326 DIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSLADIEKLIKRQFE 385 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398 + VS+ P P +A R+ RI + P L S G Sbjct: 386 KQTVSLERAPRPRRDADETRE-HRIARAPRALPSDTG 421 >gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162] gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola DSM 20162] Length = 602 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 215/369 (58%), Gaps = 13/369 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E GY N + +Q A + P L DV+ AQTG+GKT AF + + S + E + Sbjct: 42 ALAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVLSKIDGE------SR 95 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL +APTRELA+QV ++ + V GG S + L+ GA I+VGTP Sbjct: 96 TPQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGLRRGAQIIVGTP 155 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++S+L+ +VLDEADEML +GF++D+E IL +P+ +++ +FSAT+ PA Sbjct: 156 GRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQVALFSATMPPA 215 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +AK Y D V +++ ++ S+I R + VA + +A+ +L I+F Sbjct: 216 IRKIAKKYLHDPVEISVKAKTATGSNITQRYLQVAHQRKLDALTRLLEVEEFDGMIIFVR 275 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+++ + L A++G++ Q +R + ++DG+ + +ATDVAARG+D+ Sbjct: 276 TKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVATDVAARGLDVER 335 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVVW 369 + V++ ++ + E+ +HR GRTGRAGRKG + +FV P +++ R E+ R+ + Sbjct: 336 ISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIEKATRQPLTEIGL 395 Query: 370 EPAPSVEAI 378 PSVE + Sbjct: 396 ---PSVEDV 401 >gi|77359936|ref|YP_339511.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas haloplanktis TAC125] gi|76874847|emb|CAI86068.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas haloplanktis TAC125] Length = 616 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 12/379 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ E GY + +Q + L KDVL AQTG+GKT AF L L + + Sbjct: 11 NLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNI--- 67 Query: 66 NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQ 122 P+ P L + PTRELA+QV E YAK G+ V GG S + L+ Sbjct: 68 ----DPSVKQPQILVLTPTRELAIQVAEAFEQ-YAKHVRGIEVLALYGGQSYSIQLSALR 122 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 GA ++V TPGRL DHI + L+A+VLDEADEML +GF DD+E I++ +P++++ Sbjct: 123 RGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQT 182 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I ++ Y + +V+I++ N S ++ + A ++ AIV L Sbjct: 183 CLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVE-QVFWNASIHKNKAIVRFLEAE 241 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + AIVF TR + ++L F L+G+++QQ R ++ ++ G V IATD Sbjct: 242 QYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIATD 301 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ L LVI+ ++ + E +HR GRTGRAGR G ++ + N + + + R Sbjct: 302 VAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRH 361 Query: 363 ANVSVVWEPAPSVEAIRER 381 N + P+ + + E+ Sbjct: 362 TNSDIAQVELPTAKIVEEK 380 >gi|227114116|ref|ZP_03827772.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 460 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 136/343 (39%), Positives = 198/343 (57%), Gaps = 11/343 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY ++T VQ A L L DV A+TGSGKT AFG+ L ++ + F+ Sbjct: 19 LNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD--FTTQ-- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV +EL L +A+ ++ +C GG + ++ L + HIVVGTP Sbjct: 75 --ALVLCPTRELADQVSKELRRLARFAQNIKILTLC-GGQPMGQQLDSLVHAPHIVVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R + L++ LK +VLDEAD MLD+GF D I+ ++ +P R+ L+FSAT Sbjct: 132 GRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPEE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ R IA + + S I+ R R ++ IL ++ + +VFC+ Sbjct: 192 IEQISARVQRQPQRFEIA-DGVEESAIEQRFYETTKDQRLPLLIAILGHYQPSSCVVFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L V AL G+L Q++R L + RV +ATDVAARG+D+ + Sbjct: 251 TKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKE 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 LELV++ EL+ +PE +HR GRTGRAG KG++V PQ M R Sbjct: 311 LELVVNFELAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMNR 353 >gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP19-BS75] gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1873-00] gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6] gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54] gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031] gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585] gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP19-BS75] gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6] gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1873-00] gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54] gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585] gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031] Length = 524 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + +++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282604|gb|EDT48028.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 533 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 DKIDTSRNLVQ------ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPES 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + N+ K+ V IA++ ID + V +++ + + ++ Sbjct: 175 RQTLLFSATMPEPIKRIGVNFMKNPEHVKIAAKELTTELIDQYYLRVKENEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L F+ + G+L Q +R L+ ++ + + Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|29375434|ref|NP_814588.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583] gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis TX0104] gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis HH22] gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis TX1322] gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis ATCC 29200] gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus faecalis R712] gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus faecalis S613] gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248] gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855] gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134] gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109] gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411] gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470] gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635] gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512] gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102] gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516] gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus faecalis V583] gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis TX0104] gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis HH22] gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis ATCC 29200] gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis TX1322] gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus faecalis R712] gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus faecalis S613] gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411] gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109] gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134] gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855] gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248] gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512] gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102] gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635] gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516] gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470] gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137] gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000] gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017] gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027] gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141] gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244] gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012] gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031] gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043] gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312] gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645] gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302] gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341] gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342] gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346] gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B] gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630] gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A] gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF] Length = 536 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ G+ T +Q + L KDV+ AQTG+GKT AFGL + + + A+N Sbjct: 36 AVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQ--- 92 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L IAPTRELA+Q EL L + V GG + R+ R L++ HIVVGTPG Sbjct: 93 ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPG 149 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI + L + ++ +VLDEADEML++GF +DIE I+ P++R+ L+FSAT+ PAI Sbjct: 150 RLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAI 209 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + K V I ++ ID V ++ + + +L + IVF T Sbjct: 210 KNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT 269 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + L ++ + G+LSQQ+R + L+ ++G + +ATDVAARG+D+ + Sbjct: 270 KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGV 329 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 330 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 369 >gi|332300603|ref|YP_004442524.1| DEAD/DEAH box helicase domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177666|gb|AEE13356.1| DEAD/DEAH box helicase domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 553 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 205/368 (55%), Gaps = 9/368 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A S+ G+ VQ+ ++ P L D++ ++TGSGKT A+GL L ++ + Sbjct: 15 ATSDLGFSEPMPVQQEVI-PYLSSHRGDLIALSKTGSGKTAAYGLPLLERIIQ-----AK 68 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGAHIVVG 130 SAP L + PTRELA+QV +L L T V + GG S+ + R L G HI+V Sbjct: 69 GSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQLAKGYHIIVA 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRLCD +R K + + + VVLDEAD MLD+GF+ D++ IL + P++ +FSAT+S Sbjct: 129 TPGRLCDLLRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQVEHWLFSATMS 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +A NY DA V I + N+ ++DI + V V + A+ ++ Y+ I+F Sbjct: 189 REVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRVVDYYPNIYGIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TRA + L + AL G+LSQ +R + R ++ +ATDVAARG+D+ Sbjct: 249 CRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQLLVATDVAARGLDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D+ V+H L ++P++ HRSGRT RAG+ G+S+ + ++ + R A + + Sbjct: 309 DDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRIIERHAGIRIEAM 368 Query: 371 PAPSVEAI 378 P PS + I Sbjct: 369 PLPSGQEI 376 >gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145] gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145] Length = 587 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 208/377 (55%), Gaps = 15/377 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65 +P V+ L G+ T +Q+ + L DVL AQTG+GKT AF L ALAS + Sbjct: 15 LPSVVLNQLEALGFTQPTPIQQQAIPSLLEGNDVLGEAQTGTGKTAAFSLPALAS--IEA 72 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 N R + L + PTRELA+QV +E + G+ VA GG + + + L+ G Sbjct: 73 NQRQTQM-----LVVTPTRELAIQVADAIESFSKQMKGMEVATVYGGSAFGPQIQALKRG 127 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGRL D + K L + L+ VLDEADEML++GF +DIE IL S P + + Sbjct: 128 ASVVVGTPGRLIDLLNKKVLKLDGLRFAVLDEADEMLNMGFIEDIETILQSVPDTAQRAL 187 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ AI LAK Y D V + IA + ++I RA V + A+ +L Sbjct: 188 FSATMPTAIRKLAKTYLTDPVNIRIAPVEQAKANIRQRAWKVMGMTKMTALTRLLEVTEY 247 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + A+VF TR ++L F+ LSG+L+Q +R + +R G +V +ATDV Sbjct: 248 QRALVFVRTRQDTMDVAELLQRQGFRAAPLSGDLNQAQREQTVTQLRSGHIKVLVATDVV 307 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR 361 ARG+D+P++ VI+ +L S+ E+ +HR GRTGRAGR G ++ +++ R E+L Sbjct: 308 ARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRSGEAILFYRGKERHLLRHYEKL-- 365 Query: 362 EANVSVVWEPAPSVEAI 378 N S+ + PS E + Sbjct: 366 -TNGSIEYFDVPSAEEL 381 >gi|271500546|ref|YP_003333571.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii Ech586] gi|270344101|gb|ACZ76866.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586] Length = 457 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 206/361 (57%), Gaps = 8/361 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+++T +Q A L L KDV A+TGSGKT AFGL L L + +F S Sbjct: 18 LNELGYLSMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHL--DAGQFKTQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV EL L + V V GGV +R L + HI+V TPG Sbjct: 75 ---LVLCPTRELADQVANELRRLARGMPNIKVLVLCGGVPFSIQRDSLIHAPHIIVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ + +++ L+ +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT AI Sbjct: 132 RLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIHHAPAERQTLLFSATWPEAI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +++ Q+D + + I + + + ++ + V+ + + + + +L + +VFC+T Sbjct: 192 AAISRRIQRDPLVIEIDTVDELPA-VEQQFYEVSRNGKLDLLQKLLSREQPASCVVFCNT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L V+AL G++ Q++R L +G +RV +ATDVAARG+D+ L Sbjct: 251 KKDCQAVYDALTHSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKAL 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E+VI+ ELS +PE +HR GRT RAG +G+++ + +RA L + + W P P Sbjct: 311 EMVINYELSWDPEVHVHRIGRTARAGEQGLAISLCAPEEAQRANALEEMLKMKLTWHPLP 370 Query: 374 S 374 S Sbjct: 371 S 371 >gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597] gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597] Length = 520 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + ++ + AIVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFATMTRLMDVEQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6] gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O] gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6] gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O] Length = 641 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 162/517 (31%), Positives = 269/517 (52%), Gaps = 30/517 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL G+V+ T +Q A + L+ D L AQTG+GKT AF L L + L LA+ Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLLQGVDALGKAQTGTGKTAAFSLPLLNKLDLAQR------ 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAH++VGT Sbjct: 74 -KPQAIVLAPTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASIVDQMRALKNGAHVIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I + L++ + VLDEADEML++GF DD+ I++ +P + ++FSAT+ P Sbjct: 133 PGRVQDLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQRVLFSATMPP 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + + + + +D V V++A +N + + +V ++D A+ +L +IVF Sbjct: 193 MLKNIVERFLRDPVTVDVAGKNHTVDKVAQQFWVVKGVEKDEAMSRLLETEETDASIVFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 253 RTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVP 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVV 368 + V + ++ + E+ +HR GRTGRAGR+G ++ ++ N M R ER+ + + + Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRQGKAILLVRTNQIRMLRTIERVTKSSMEEIQ 372 Query: 369 WEPAPSVEAIRERDAQRILQDPL-------FLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 V A R LQ + F + I+ E+++ + D +AA L Sbjct: 373 LPLRDKVAAARLDKLAAELQADIEHKALDKFAELIEKLEERL------EIDSSVLAAILL 426 Query: 422 RIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS-W--FSLSVGSK 476 + + L E + + + R + R + GG R++F + W + L VG + Sbjct: 427 KRQQGKRPLFYIGEDPMIEAIERDKQNRRERRENRDNGGRRESFNSNQDWDTYQLQVGRE 486 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 Q + + ++ L G+ + SIGAI++ + TFV++ Sbjct: 487 QGVQVKDIVGALANELGLGKGSIGAIKLAQEHTFVQL 523 >gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] Length = 524 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 141/418 (33%), Positives = 220/418 (52%), Gaps = 11/418 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E++ G+ + +Q + L D++ +QTGSGKT AF L L N Sbjct: 13 PELL-ESIQRLGFEQPSPIQARTIPVALDGSDIVGLSQTGSGKTAAFALPALHGLDLSN- 70 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 A L + PTRELAVQV E+ L + A+ + GG + R+ R L+ G H Sbjct: 71 -----KATQVLVLCPTRELAVQVCEEIHRLSTAMPKLQALPVYGGTPIDRQIRALKKGVH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH++ K L ++ +LDEAD MLD+GFR+D+E ILD+ P++R+ L FS Sbjct: 126 VVVGTPGRVMDHMKRKTLKTDSIRLCILDEADRMLDMGFREDMEIILDAIPQERQTLFFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT++ + L K + DA ++ I + I+ V + + +L + Sbjct: 186 ATMNRGVQGLIKAFSHDAKQIEIEQKTLTVESIEQVYYEVRNRSKVEVMCRLLDMEPTQR 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVFC+T+ V + L + + G++SQ R ++ RD + +ATDVAAR Sbjct: 246 GIVFCNTKQMVEDVCEALNARGYTADRIHGDISQGIREKVIRRFRDNAIEILVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ D+ELV + +L +PE+ +HR GRTGRAGR G S+ + RR E + R S Sbjct: 306 GLDIDDIELVFNYDLPYDPEDYVHRIGRTGRAGRSGKSITFVYGRDIRRLEAIERYIRQS 365 Query: 367 VVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + PS E + A +I L+D L + + ++ +L A H P IA+ + Sbjct: 366 IRRTRIPSQEEVEGYRADKIFNQLRDKLEAAEFKNYDHQVDRLLDAGHTPTDIASALI 423 >gi|288801723|ref|ZP_06407165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella melaninogenica D18] gi|288335765|gb|EFC74198.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella melaninogenica D18] Length = 640 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 152/446 (34%), Positives = 231/446 (51%), Gaps = 28/446 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I A+SE G+ + VQE ++ P L DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSEEIRRAISELGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + + + A+ ++PTREL +Q+ +L E+ + +A GG S+ Sbjct: 60 PLLQRI------DTSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASID 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L++G I+V TPGRL D + + ++ VVLDEADEML++GF++ I IL Sbjct: 114 TQIRQLRHGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTG 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P+ R L+FSAT+S + +AK Y D + + S N +++ +V D+ A+ Sbjct: 174 VPEDRNTLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 ++ ++ AIVFC T+ L + + AL G+LSQQ+R +Q R Sbjct: 234 KRLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLT 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ L + EN HRSGRTGRAG+KG S+ +I + + Sbjct: 294 QILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415 + RE + V PS E I + LF K M D+L D ++ Sbjct: 354 VRNIEREISKDFVDGTLPSPE--------EICKKQLF--------KTMDDILKTDVDEDQ 397 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVS 441 IA I+R +E+ +VS Sbjct: 398 IAPYMKDINRQFEYIDKEVVIKKIVS 423 >gi|261820134|ref|YP_003258240.1| ATP-dependent RNA helicase DeaD [Pectobacterium wasabiae WPP163] gi|261604147|gb|ACX86633.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae WPP163] Length = 632 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 178/593 (30%), Positives = 276/593 (46%), Gaps = 45/593 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 20 ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLNNLKPE------LK 73 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV ++ GV V GG + R L+ GA IVVGTP Sbjct: 74 APQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLRALRGGAQIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + +FSAT+ A Sbjct: 134 GRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQTALFSATMPEA 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + KD V I S DI V ++ A+V L AI+F Sbjct: 194 IRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAIIFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 254 TKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 314 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVEL 373 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRIHRA 426 P+ E + +R + ++ + M LL K P E +AA L++ + Sbjct: 374 PNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLTKLQPQEELDIETLAAALLKMAQG 431 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG-----------SRDNFKGS--------- 466 P + P R FRD + G SRD + Sbjct: 432 --ERPLILPPDPAFRPRREFRDRDESRSDSRGDRRRDPRDSRESRDGDRPQRRERRESGE 489 Query: 467 -SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521 + + VG E R ++ + I+ + IG I++ + +E+ D + Sbjct: 490 MELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGDLLSHF 549 Query: 522 RRTVKLDKGIQLKYLGG--EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572 RT L+K + ++ LG +P+ RG +DGA R + F G + Sbjct: 550 TRTRILNKPMNMQLLGDAVAQPERRGGNRPAGAGGERRDGAAPR-RSFGGGER 601 >gi|313885882|ref|ZP_07819622.1| putative DEAD-box ATP-dependent RNA helicase CshA [Porphyromonas asaccharolytica PR426713P-I] gi|312924637|gb|EFR35406.1| putative DEAD-box ATP-dependent RNA helicase CshA [Porphyromonas asaccharolytica PR426713P-I] Length = 553 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 162/525 (30%), Positives = 268/525 (51%), Gaps = 29/525 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A S+ G+ VQ+ ++ P L D++ ++TGSGKT A+GL L ++ + Sbjct: 15 ATSDLGFSEPMPVQQEVI-PYLSSHRGDLIALSKTGSGKTAAYGLPLLERIIQ-----AK 68 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGAHIVVG 130 SAP L + PTRELA+QV +L L T V + GG S+ + R L G HI+V Sbjct: 69 GSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQLAKGYHIIVA 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRLCD +R K + + + VVLDEAD MLD+GF+ D++ IL + P++ +FSAT+S Sbjct: 129 TPGRLCDLLRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQVEHWLFSATMS 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +A NY DA V I + N+ ++DI + V V + A+ ++ Y+ I+F Sbjct: 189 REVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRVVDYYPNIYGIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TRA + L + L G+LSQ +R + R ++ +ATDVAARG+D+ Sbjct: 249 CRTRAETKEIAEWLIRDGYNADTLHGDLSQAQRDMVMNRFRIRNLQLLVATDVAARGLDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D+ V+H L ++P++ HRSGRT RAG+ G+S+ + ++ + R A + + Sbjct: 309 DDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRIIERHAGIRIEAM 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVL---LAKHDPEKIAAGFL-- 421 P PS + I ++ + + DS Q DE +++ + LA PE+I L Sbjct: 369 PLPSGQEICKKQLFALATRIEYADSNEHGTQYDE--LLNAIVQKLAWLPPEEIIRRVLTL 426 Query: 422 ---RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG----SRDNFKGSSWFSLSVG 474 RI R P +++ L + ++R S + SR + + +++G Sbjct: 427 EADRIMRYYANTP-DLSAQELATEEPKYRTKSTPEEHRKAPKKRSRTDLPPMTSLRINLG 485 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 + K L+ ++ R+ + +IG I + ++ EV+++ D Sbjct: 486 KRDKLYPNRLLELINRTLPY-QITIGKIDLSLSYSYFEVASEWAD 529 >gi|257452688|ref|ZP_05617987.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R] gi|317059228|ref|ZP_07923713.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R] gi|313684904|gb|EFS21739.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R] Length = 528 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 161/514 (31%), Positives = 259/514 (50%), Gaps = 41/514 (7%) Query: 11 IGE----ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAE 65 IGE ALS++GY T +Q + L EKD++ AQTG+GKT AF L + + Sbjct: 15 IGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPILENI-EH 73 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D+ + + PTRELA+QV E+ L + + + GG S+ +R+ L+NGA Sbjct: 74 QDKIQ------GIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLRNGA 127 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ D I K L + LK +LDEADEML++GF +++E IL+++ + +RML F Sbjct: 128 DIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRMLFF 187 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +AK + KD + + + D V D+ A+ I+ Sbjct: 188 SATMPSEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRIIDLAEDF 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ V+ L + + L G++ Q R L+ + + + +ATDVAA Sbjct: 248 YGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILVATDVAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RGID+ DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + Sbjct: 308 RGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKIVK 366 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPEKIAAG 419 + E P V+ + + +I +D +D I G+ KK+ LL K + E I + Sbjct: 367 TEIRKEEVPEVKDVIQAKKFQIQKD---IDEILGEGEYDKFKKLAQDLLKKEEAENIVSS 423 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 L++ A E++ S + + S VGGG F +++G K Sbjct: 424 LLKL------AYEDVLDES------NYNEISSTKSVGGGKARLF-------VALGRKDGM 464 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 A+ L+ + + + + + I + V +F+ V Sbjct: 465 TAKKLVEKVMKVAKVQDKKIRNVEVYEAFSFITV 498 >gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC 14266] gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC 14266] Length = 721 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 213/376 (56%), Gaps = 8/376 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + +A+ G+ + +Q + L DVL AQTG+GKT AF L + S + A+ Sbjct: 79 LPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSLIDAD- 137 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 P AL +APTRELA+QV + + + V GG + + L+ G Sbjct: 138 -----IRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRRG 192 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A IVVGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL +P+ +++ + Sbjct: 193 AQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEDKQVAL 252 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I L+K Y D + + SE R +++I R + VA ++ +A+ IL Sbjct: 253 FSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEF 312 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F T+ + L F A++G+++QQ+R ++ ++DGR + +ATDVA Sbjct: 313 EAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILVATDVA 372 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ + V++ ++ S+ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 373 ARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNIERATN 432 Query: 365 VSVVWEPAPSVEAIRE 380 + P+V+ + E Sbjct: 433 APLQEMELPTVDEVNE 448 >gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH] gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH] Length = 467 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 137/417 (32%), Positives = 230/417 (55%), Gaps = 18/417 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I + L E G+ + +QE + L+ KD++ AQTG+GKT AFGL + + L Sbjct: 7 NLKKEILKRLEEIGFEKPSPIQEKAIPVVLQGKDIVAQAQTGTGKTAAFGLPILNML--- 63 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 AL I PTRELA+QV E+ G+ A GG S R+ ++N + Sbjct: 64 ------EKGQKALIITPTRELAIQVSEEIFRFGKHLGIHTATVYGGSSYSRQINHIKN-S 116 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL D + ++I+ + VVLDEADEMLD+GF DDI+ I P R+ L+F Sbjct: 117 EVIVATPGRLIDLLSSGKIDIAP-EYVVLDEADEMLDMGFLDDIKEIFKYVPSNRQTLLF 175 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +LAK KD + I + + +I ++ +R++A++ ++ Y Sbjct: 176 SATMPKPILSLAKTILKDPEFIQITKKEVTNENIKEYFYVIDEHERNDALIRLIDYKQPN 235 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AIVFC T+ V L+ F L G++ Q++R ++ + R + +ATDVAA Sbjct: 236 KAIVFCRTKKDVDTVADFLSGVGFDAKGLHGDMDQRKREEVIKGFKGNRIEILVATDVAA 295 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ D+ V + L +PE+ +HR GRTGRAG++GM++ ++ + R ++ + + + Sbjct: 296 RGLDVNDVTHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALSKIQKISKI 355 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAAGF 420 + + P+++ ++ + Q+I++ + SI+ + K ++V+VL D IA F Sbjct: 356 EL--KEVPTLQDVKNTEIQKIMEK---ISSIEPNTKSIEIVEVLQNDFDLFTIATKF 407 >gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058] Length = 523 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGI 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str. Challis substr. CH1] gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus gordonii str. Challis substr. CH1] Length = 523 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 195/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLDQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|261414880|ref|YP_003248563.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371336|gb|ACX74081.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 463 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 203/346 (58%), Gaps = 7/346 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ +P+ L E G+ L VQ + L +D+LV ++TGSGKT A+ L L ++ Sbjct: 34 FDMLPEEQKAILREHGWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIV 93 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 ++ P AL + PTREL +QV E E L TG+ GGVS + + L++ Sbjct: 94 RDH------PYPQALILVPTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALRS 147 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G H++V TPGRL DHI+ +++ ++ +VLDEADEML +GF D++ I PK Sbjct: 148 GVHVIVATPGRLMDHIQRGNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISCT 207 Query: 184 MFSATISPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 M+SATI + +LA+ +Q+ A ++++ + +++++R + ++D+ + +L Y+ Sbjct: 208 MYSATIPQTVKSLAREFQRPGADFLSLSYDKVIANNLEHRYYTCDVMEKDSMTIKVLEYY 267 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++ ++FC+ + VS +VL+ + F+V ALSG+++Q R L RD + ++ I TD Sbjct: 268 NPESCMIFCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICTD 327 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI + ++ E +HRSGRT RAGR G+ + +I Sbjct: 328 VAARGIDVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLI 373 >gi|119470813|ref|ZP_01613424.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales bacterium TW-7] gi|119446040|gb|EAW27319.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales bacterium TW-7] Length = 600 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 175/589 (29%), Positives = 285/589 (48%), Gaps = 45/589 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ E GY + +Q + L KDVL AQTG+GKT AF L L + + Sbjct: 11 NLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNI--- 67 Query: 66 NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQ 122 P+ P L + PTRELA+QV E YAK GV V GG S + L+ Sbjct: 68 ----DPSVKQPQILVLTPTRELAIQVAEAFEQ-YAKGTRGVEVLALYGGQSYSIQLSALR 122 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 GA I+V TPGRL DHI + L+A+VLDEADEML +GF DD+E I++ +P++++ Sbjct: 123 RGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQT 182 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I ++ Y + +V+I++ N S ++ + A ++ AIV L Sbjct: 183 CLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVE-QVFWNASVHKNKAIVRFLEAE 241 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + AIVF TR + ++L F L+G+++QQ R + ++ G V IATD Sbjct: 242 QYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIATD 301 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ L LVI+ ++ + E +HR GRTGRAGR G ++ + N + + + R Sbjct: 302 VAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRH 361 Query: 363 ANVSVVWEPAPSVEAIRERDAQRI--LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 + P+ + + E+ RI LQ L + D +V A + EK+ Sbjct: 362 TKSEIAQVELPTAKVVEEK---RIAALQAKLSIALENKDITFFNEV--ATNMAEKLDLPL 416 Query: 421 LRIHRAGLCAPEEITPVSL----VSGRDRFRDDSRAFKVG-------GGSRDNFKGSS-- 467 + A LC ++ +P+ + + R+R +SR + GG R K Sbjct: 417 ENLAGALLCLAQQQSPIKVEEVKIQPRERNERNSRNDRGDRGRRNERGGERSERKPRERN 476 Query: 468 --------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SA 515 + + VG + + + ++ + + I+ + IG IR+ + V++ Sbjct: 477 SRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDQHSTVQLPQNMPK 536 Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKP-DFRGYKSSGFKSKNSQDGATKR 563 D +D ++ + + + + P + RG + SG + +N KR Sbjct: 537 DVLDHFQKVFICKRPMGMTITQDQGPAEPRGERPSGDRKRNDGPRGDKR 585 >gi|308189119|ref|YP_003933250.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1] gi|308059629|gb|ADO11801.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1] Length = 640 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 178/569 (31%), Positives = 278/569 (48%), Gaps = 51/569 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E+L+ GYV + +Q + L +DVL AQTGSGKT AF L L N+ Sbjct: 17 ILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL------NNIDP 70 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ G+ V GG + R L+ G +VV Sbjct: 71 TVKAPQILVLAPTRELAVQVAEAITEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L +S+L+ +VLDEADEML +GF +D+E I+ P + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLELSNLRGLVLDEADEMLRMGFIEDVETIMAQIPAGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + K + KD V I S DI ++ A + +A+V L AI+ Sbjct: 191 PEAIRRITKRFMKDPQEVRIQSSMTTRPDIS-QSYWTAYGRKTDALVRFLEAEDFDAAII 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 250 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVV 368 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR R + R +++ Sbjct: 310 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIP 368 Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418 P+ E + ER A ++ Q L+S D+ + LL K P E +AA Sbjct: 369 EVELPNAELLGERRLAKFAAKVQQQ---LESSDLDQYR---ALLTKMQPEDELDLETLAA 422 Query: 419 GFLRI---HRAGLCAPEEITPVSLVSGR---------------DRFRDDSRAFKVGGGSR 460 L++ R + PE P DR +SR + G R Sbjct: 423 ALLKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARSDRGPRESRDSRDGDRPR 482 Query: 461 DNFKG---SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---- 513 + + + VG E R ++ + I+ + IG I++ + + +E+ Sbjct: 483 RERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGNHSTIELPKGM 542 Query: 514 SADGVDLLRRTVKLDKGIQLKYLGGEKPD 542 D + RT L+K + ++ LG +P+ Sbjct: 543 PGDVLQHFTRTRILNKPMNMQLLGDAQPN 571 >gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66] gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66] Length = 523 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 634 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 140/405 (34%), Positives = 223/405 (55%), Gaps = 15/405 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 23 AVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ- 79 Query: 74 APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGTP Sbjct: 80 ---ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTP 136 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P+KR++ +FSAT+ PA Sbjct: 137 GRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPA 196 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 197 IRRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFAR 256 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+A + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 257 TKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVER 316 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSVVW 369 + V++ ++ + E+ +HR GRTGRAGR G ++ + + M R ER R+ + Sbjct: 317 ISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIERATRQPIEEMQL 376 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +++ G + M LL +++ E Sbjct: 377 ---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 416 >gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330] Length = 523 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|237742838|ref|ZP_04573319.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13] gi|229430486|gb|EEO40698.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13] Length = 528 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 153/507 (30%), Positives = 251/507 (49%), Gaps = 35/507 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + LS++GY + T +Q + L+ +KD++ AQTG+GKT AF L + + F Sbjct: 21 KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VVGT Sbjct: 74 LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ LK +LDEADEML++GF +DIE IL + + +RML FSAT+ Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249 I +AKN+ K+ + + S R+ + + +++RD A+ I+ I+ Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARGID Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370 Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 E P V+ + + RI+ D + +D+ KK+ LL D E I A L++ + Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 + +S V D G + +++G K + L+ Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVE 471 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + + I + I V +FV V Sbjct: 472 FIIKKAKIKQSYIKNAEVYEGFSFVSV 498 >gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2] gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2] Length = 515 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ G+ T +Q + L KDV+ AQTG+GKT AFGL + + + A+N Sbjct: 15 AVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQ--- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L IAPTRELA+Q EL L + V GG + R+ R L++ HIVVGTPG Sbjct: 72 ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI + L + ++ +VLDEADEML++GF +DIE I+ P++R+ L+FSAT+ PAI Sbjct: 129 RLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + K V I ++ ID V ++ + + +L + IVF T Sbjct: 189 KNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + L ++ + G+LSQQ+R + L+ ++G + +ATDVAARG+D+ + Sbjct: 249 KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121] gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121] Length = 461 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/344 (36%), Positives = 196/344 (56%), Gaps = 9/344 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + LS+ G+ T +Q L L + D+L AQTGSGKT+AF + + L+ N Sbjct: 12 LPTKLTALLSDLGFETFTPIQAQTLPSILSDNDILAQAQTGSGKTLAFAIGM---LMKIN 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 R+ L + PTRELA QV +E+ + + V+++C GG+ + L++G Sbjct: 69 PRYFGVQG---LVMCPTRELADQVCKEIRKTARFLENIKVLSLC-GGMPFGPQIGSLEHG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHIVVGTPGRL +H+R L + L +VLDEAD MLD+GF D I +++S+PKKR+ LM Sbjct: 125 AHIVVGTPGRLLEHVRKGTLRLDSLNTLVLDEADRMLDMGFVDSIRTLVESTPKKRQTLM 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT I ++ +Q + + + + DI V D+ A+++ +RY Sbjct: 185 FSATYPETIGKISAEFQHNPKTIKVEATQESKPDIKQFFVKSNKDDKPYALMSAVRYQNP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVFC+T+ L +H A+ G+L Q++R L + R+ +ATDVA Sbjct: 245 EQAIVFCNTKIECQTIADFLVDHKISAKAIHGDLEQRDRDQVLVQFSNASCRILVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ +++ VI+ + + + + HR GRTGRAG KG+++ ++ Sbjct: 305 ARGIDVKEVDTVINYDTTRDIDVHTHRIGRTGRAGNKGVAINLV 348 >gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium ammoniagenes DSM 20306] gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium ammoniagenes DSM 20306] Length = 658 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 126/373 (33%), Positives = 211/373 (56%), Gaps = 7/373 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + +A+++ GY + +Q + + +DV+ AQTG+GKT AF L + S + Sbjct: 67 LPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDVN- 125 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 A P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 126 -----ARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA 180 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL +P+++++ +F Sbjct: 181 QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILADTPEEKQVALF 240 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I L+K Y V + SE R + +I R +L A + +A IL Sbjct: 241 SATMPNSIRRLSKKYLNSPAEVTVKSEQRTNDNIKQRFLLTAHRAKLDAFTRILEVTDYD 300 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ + L + + A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 301 AMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAA 360 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 361 RGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 420 Query: 366 SVVWEPAPSVEAI 378 + P+V+ + Sbjct: 421 RLEEMELPTVDEV 433 >gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol] gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol] Length = 513 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ G+ T +Q + L KDV+ AQTG+GKT AFGL + + + A+N Sbjct: 15 AVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQ--- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L IAPTRELA+Q EL L + V GG + R+ R L++ HIVVGTPG Sbjct: 72 ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI + L + ++ +VLDEADEML++GF +DIE I+ P++R+ L+FSAT+ PAI Sbjct: 129 RLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + K V I ++ ID V ++ + + +L + IVF T Sbjct: 189 KNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + L ++ + G+LSQQ+R + L+ ++G + +ATDVAARG+D+ + Sbjct: 249 KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1] gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200] gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3] gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8] gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5] gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96] gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704] gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1] gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1] gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6] gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188] gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis AR01/DG] gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11] gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98] gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1] gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis TUSoD Ef11] gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1] gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200] gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3] gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8] gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5] gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96] gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704] gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1] gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1] gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6] gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188] gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG] gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11] gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98] gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1] gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis TUSoD Ef11] gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62] Length = 515 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ G+ T +Q + L KDV+ AQTG+GKT AFGL + + + A+N Sbjct: 15 AVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQ--- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L IAPTRELA+Q EL L + V GG + R+ R L++ HIVVGTPG Sbjct: 72 ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI + L + ++ +VLDEADEML++GF +DIE I+ P++R+ L+FSAT+ PAI Sbjct: 129 RLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + K V I ++ ID V ++ + + +L + IVF T Sbjct: 189 KNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + L ++ + G+LSQQ+R + L+ ++G + +ATDVAARG+D+ + Sbjct: 249 KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|32474767|ref|NP_867761.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1] gi|32445306|emb|CAD75308.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1] Length = 452 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 199/346 (57%), Gaps = 6/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ ++ A+ + G+ + +Q A++ L KDV+ A+TG+GKT AF + + L Sbjct: 50 DLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQL--- 106 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D P A+ I PTRELA QV E E L +AV GG +++R+ R L+NG Sbjct: 107 -DSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVPTEIAVLSGGKNMNRQLRQLENGT 165 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DH++ L +++ VVLDEAD MLD+GFR IE I+ P+ R+ L+ Sbjct: 166 QLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLLL 225 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P + LA++Y + V ++ + I+ R +A D+ + ++L+ + Sbjct: 226 SATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESLLKREKPE 285 Query: 246 NAIVFCSTRASVSRFTKVLA-EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+FC T+ R + L+ E+ A+ G+L Q+ER LQ +RDG + +ATDV Sbjct: 286 QAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVATDVV 345 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349 RGID+ + +++ ++ + ++ +HR GRTGR GR G++ FV+P Sbjct: 346 GRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVP 391 >gi|322833585|ref|YP_004213612.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] gi|321168786|gb|ADW74485.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] Length = 460 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 135/346 (39%), Positives = 199/346 (57%), Gaps = 17/346 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY +T +QEA L L +DV A+TGSGKT AFG+ L +++ Sbjct: 19 LNELGYTEMTPIQEASLPAILLGQDVRAKAKTGSGKTAAFGIGLLNSITVSQ------FV 72 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV +EL L + + ++ +C GG ++ + L + HIVVGTP Sbjct: 73 AQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQAIGPQLESLVHPPHIVVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ +H+R L + LK +VLDEAD MLD+GF +DIE ++ +P+ R+ L+FSAT Sbjct: 132 GRIQEHLRKGTLKLDELKVLVLDEADRMLDMGFSEDIEDVVSYTPQDRQTLLFSATYPDG 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALS--DRDNAIVNILRYHGAKNAIV 249 I ++ +Q+ ++V I E+ DI D R + + R + + +L + + +V Sbjct: 192 IERISSKFQRQPLKVEIEGED----DIADIRQIFIEADKHQRLSLLAAVLYQYQPTSCVV 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ L +AL+G+L Q++R L +G RV +ATDVAARG+D Sbjct: 248 FCNTKRDCQDVCDDLKAKGISALALNGDLEQRDRDRVLVRFSNGSCRVLVATDVAARGLD 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 + L LVI+ ELS +PE +HR GRTGRAG G++V V PQ M R Sbjct: 308 IKQLGLVINYELSFDPEVHVHRVGRTGRAGTSGLAVSLVTPQEMPR 353 >gi|294339231|emb|CAZ87585.1| RNA helicase [Thiomonas sp. 3As] Length = 488 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/397 (35%), Positives = 224/397 (56%), Gaps = 10/397 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I A+S+ GY LT +Q + L +D++ +AQTG+GKT AF L + LL + Sbjct: 26 ILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQLLPLASTSV 85 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL +APTRELA QV L+ T + A GG+ + ++ +L+ G ++ Sbjct: 86 SPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKAELRTGVDLL 145 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ K +N+ ++ VVLDEAD MLD+GF D++ IL PK+R L+FSAT Sbjct: 146 VATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQRTTLLFSAT 205 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA++Y ++ + V +A N ++++ R V D+ +V +LR + I Sbjct: 206 FSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVYQVEEDDKRATLVQLLRDNPLPQVI 265 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF ++R R T++L + A+ G+ SQ ER L+ + G + +ATDVAARG+ Sbjct: 266 VFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQALVATDVAARGL 325 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLFR 361 D+ +L V++ ++ + E+ +HR GRTGRAG G+++ + ++++ +R F Sbjct: 326 DIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSLADIEKLIKRQFE 385 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398 + VS+ P P +A R+ RI + P L S G Sbjct: 386 KQTVSLERAPRPRRDADETRE-HRIARAPRALPSDTG 421 >gi|327405768|ref|YP_004346606.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321276|gb|AEA45768.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM 16823] Length = 685 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 172/547 (31%), Positives = 278/547 (50%), Gaps = 68/547 (12%) Query: 19 GYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 G+ T +Q++ + L+ E D + AQTG+GKT AFGL L + DR + Sbjct: 20 GFAEPTPIQQSAIPHLLQLESDFVGLAQTGTGKTAAFGLPLIHKV---TDR---PTETQG 73 Query: 78 LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 L IAPTREL +Q+ ++LE +AK + V GG + ++ D++ GA +VV TPGRL Sbjct: 74 LVIAPTRELCLQISKDLEA-FAKFDQQIKVVAVYGGTDIRKQITDIKRGATVVVATPGRL 132 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D I K +N+ ++ VVLDEADEML++GF++DI+ IL ++P + + +FSAT+ + Sbjct: 133 VDLINRKAINLKTVETVVLDEADEMLNMGFKEDIDAILSATPDTKSVWLFSATMPKEVAA 192 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 +AKNY D + V + +N+ + +I++ V DR +A+ ++ +VFC TR Sbjct: 193 IAKNYMTDPLEVAMGHKNQSNENIEHIYYTVKERDRYDALKRLIDASPDIFGLVFCRTRN 252 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 + + LA+ + L G+LSQ R + R+ ++ +ATDVAARGID+ ++ Sbjct: 253 ETATVAEKLAKEGYSAEPLHGDLSQAMRDRVMDRFRERSIQLLVATDVAARGIDVDNITH 312 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRA-ERLFREANVSVVWEPA 372 VI+ L + EN HRSGRT RAG++G S+ +I +N + +A ER R + + A Sbjct: 313 VINYNLPDDIENYTHRSGRTARAGKQGKSLVLINTRENFKIKAIERQIRTTFKAALIPEA 372 Query: 373 PS---------VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + ++E + + P FL +I D +++ + K + I+A F R Sbjct: 373 SEICGIQLNKLISKVKEIEVKENDIAP-FLPAIMADFEELSKEEVIK---KFISAEFNRF 428 Query: 424 ----HRAGLCAPEEITPVSLVSGR------------------DRFRDDSRAFKVGGGS-- 459 RAG +++ +GR DRF R + G Sbjct: 429 IEYYDRAG--------DLNVSAGRGDREDRKDRAGNDRFDRKDRFERSDRGERSDRGERT 480 Query: 460 -------RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512 RD+ + +F +S+G + L+ ++C S+G+N SIG I V P+ +F E Sbjct: 481 ERAPRADRDDANRTRFF-VSLGKRDGLNPGGLLRVICDSTGLNSGSIGRIDVMPNFSFFE 539 Query: 513 VSADGVD 519 AD D Sbjct: 540 --ADKTD 544 >gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] Length = 441 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/352 (35%), Positives = 203/352 (57%), Gaps = 3/352 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66 P+++ A+ E+GY T +QE + L +D+L +AQTG+GKT AF L + L N Sbjct: 10 PEIL-RAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILERLKKFAN 68 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 SPA P+ AL ++PTRELA Q+G ++ + GGV++ + ++L+ G Sbjct: 69 TSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQTQELRRGV 128 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DHI+ K + ++ ++ +VLDE D MLD+GF DI I+ PK+R+ L+F Sbjct: 129 EILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLPKERQTLLF 188 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT +P I LA ++ V +A +N + ++ V + + +++R Sbjct: 189 SATFAPEIKRLAADFMHAPQTVEVARQNATNDQVEQLVFQVDNFKKRQLLAHLIRSREMS 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ S + + L A+ G+ +Q R L ++G+ RV +ATDVAA Sbjct: 249 QVIVFCKTKISADQLARDLKRDGLDAEAIHGDKTQGARLETLAGFKEGKLRVLVATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 RG+D+ +L V++ EL ++PE+ +HR GRTGRAG KG+++ ++ + R+ E Sbjct: 309 RGLDISELPYVVNFELPTSPEDYVHRIGRTGRAGAKGIAISLMCPDESRQHE 360 >gi|15675334|ref|NP_269508.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS] gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232] gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180] gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005] gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429] gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750] gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS] gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232] gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180] gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005] gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429] gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750] Length = 539 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|21910615|ref|NP_664883.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315] gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1] gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315] gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1] Length = 539 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus] Length = 522 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 208/354 (58%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E ++ + I +A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELHLAEDILQAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + +N+ AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIDIDNNVIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+ P + Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISHVPDE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ AI + + K+ V IA++ +++ + V ++ + + ++ Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLI 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L ++ + G+L Q +R ++ ++ + + Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G SV FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEM 348 >gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1] Length = 523 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160] gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408] gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49] Length = 523 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678] Length = 523 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|229542534|ref|ZP_04431594.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1] gi|229326954|gb|EEN92629.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1] Length = 475 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 249/469 (53%), Gaps = 26/469 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ G+ + +Q A + ++ KD++ AQTG+GKT AFG+ L + Sbjct: 8 NLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEKIDHR 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + IAPTRELA+QV EL + + V V GG + R+ R L+N Sbjct: 68 SRNIQ------GIIIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRALKNHP 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DHI L + H+ +VLDEADEML++GF DDIE IL + PK R+ ++F Sbjct: 122 QIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTMLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +A+ + + V + ++ I+ V V ++ + + +L Sbjct: 182 SATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYVKVQEREKFDVLSRLLDVQSPD 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AIVF T+ V L + + G+LSQ +R + L+ +DG+ V +ATDVAA Sbjct: 242 LAIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362 RG+D+ + V + ++ +PE+ +HR GRTGRAGR+GM++ FV P+ M + E+ ++ Sbjct: 302 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTVEQTTKK 361 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAG 419 + + P EA + QR+ + + +G+ + + V LLA++DP ++ A Sbjct: 362 RMLPM--RPPTWDEAFEGQ--QRVTMERIGETIKEGNIDEYMSVAKELLAEYDPAEVTAA 417 Query: 420 FLRIHRAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGGGSRDNFKGS 466 L++ + + TPV + R +D SR K G ++KGS Sbjct: 418 ALKL----MTKEPDKTPVHISEERPLPHKKDHSRRGKPAG----SYKGS 458 >gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus infantis SK1302] gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus infantis SK1302] Length = 525 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + +IVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059] Length = 523 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA41301] Length = 524 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + +++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATD+AARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDIAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|284006674|emb|CBA71936.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Arsenophonus nasoniae] Length = 615 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 179/586 (30%), Positives = 286/586 (48%), Gaps = 44/586 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q+ + L DVL AQTGSGKT AF L L + Sbjct: 26 ALNDLGYEKPSPIQQQCIPYLLDGCDVLGMAQTGSGKTAAFSLPLLHNIDI------TLK 79 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV + E+ V V GG + R L+ G IVVGTP Sbjct: 80 APQILVLAPTRELAVQVAEAMGEFSKHMRSVNVVALYGGQRYDSQLRALRQGPQIVVGTP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ LN+SHL+ +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 140 GRLLDHLKRGTLNLSHLRGLVLDEADEMLRMGFIEDVENIMSQIPSEHQTALFSATMPEA 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + K ++I S DI V ++ A+V L AI+F Sbjct: 200 IRRITRRFMKSPKEISIQSSVTTRPDITQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVR 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 260 TKNATLEVAEALERSGYNSSALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R + Sbjct: 320 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNIERTMKQPITEVEL 379 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQ-----GDEKK---MVDVLLAKH--DPEKIAAGFLR 422 PS + ER + F ++IQ GD +K ++ L+A D E +A+ L+ Sbjct: 380 PSAAVLSERRQAK------FAENIQKQLESGDLEKYRALLTKLVANDELDMETLASALLK 433 Query: 423 IHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGG-------SRDNFKGSSWFSLSV 473 + + L P + PV RD+ R G R + + + V Sbjct: 434 MAQGDRPLILPPD--PVRRAKREFNSRDERRRNNSNGASERSPRRERRDVGDMELYRIEV 491 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDK 529 G E R ++ + + I+ + IG I++ + +E+ + ++ L RT L+K Sbjct: 492 GRDDGVEVRHIVGAIANEADISSRYIGNIKLFASHSTIELPKGMPNELLNHLTRTRILNK 551 Query: 530 GIQLKYLGGEKPDFR---GYKSSG-FKSKNSQDGATKRFKR--FKG 569 +Q++ LG +P R G ++ G + + + G +R +R F+G Sbjct: 552 PMQMQLLGEAQPFERRGNGQRNGGELRERGRRFGNERRSEREQFRG 597 >gi|209559644|ref|YP_002286116.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131] gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131] Length = 539 Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 518 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 147/444 (33%), Positives = 238/444 (53%), Gaps = 30/444 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 13 IVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 73 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + H++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 127 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M ++R + L Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 366 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA Sbjct: 367 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANQLLEKYDATDIAAA 417 Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443 L++ L + TPV + R Sbjct: 418 MLKM----LAKEPDKTPVHITEER 437 >gi|300718571|ref|YP_003743374.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661] gi|299064407|emb|CAX61527.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661] Length = 645 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 171/563 (30%), Positives = 274/563 (48%), Gaps = 51/563 (9%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E+L+ GYV + +Q + L +DVL AQTGSGKT AF L L N+ S Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL------NNIDSSL 72 Query: 73 SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQVG + ++ G+ V GG + R L+ G +VVGT Sbjct: 73 KAPQILVLAPTRELAVQVGEAITDFSKHMKGLNVVALYGGQRYDVQLRALRQGPQVVVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ L++S+L+ +VLDEADEML +GF +D+E I+ P + +FSAT+ Sbjct: 133 PGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDNHQTALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI + K + KD V I S DI ++ A + +A+ L AI+F Sbjct: 193 AIRRITKRFMKDPQEVRIQSSMTTRPDIS-QSYWTAFGRKTDALTRFLEAEDFDAAIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 252 RTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 312 RISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 371 Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP-------EKIAAGF 420 P+ E + ER A ++ Q ++ + + LL+K P E +AA Sbjct: 372 LPNAELLGERRLAKFAAKVQQ------QLESSDLEQYRALLSKMQPAEDELDIETLAAAL 425 Query: 421 LRIHRA--GLCAPEEITPVSLVSGRDRF--RDDSRAFKVGGGSRDNFKGSSW-------- 468 L++ + L P + + R F RDD R + G R+ +G Sbjct: 426 LKMAQGERPLIVPAD----APQRPRREFKERDDRRGDRPERGPREKSEGGERPARRERRD 481 Query: 469 ------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGV 518 + + VG E R ++ + I+ + IG I++ + +E + D + Sbjct: 482 VGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDIL 541 Query: 519 DLLRRTVKLDKGIQLKYLGGEKP 541 RT L+K + ++ +G P Sbjct: 542 QHFTRTRILNKPMNMQLIGDAVP 564 >gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056] Length = 523 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150] Length = 523 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|167752241|ref|ZP_02424368.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216] gi|167660482|gb|EDS04612.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216] Length = 650 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 173/560 (30%), Positives = 277/560 (49%), Gaps = 46/560 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A++++G+ +++Q + P L +KD++ AQTG+GKT AFGL + L + + Sbjct: 19 AIAKKGFETPSAIQSLTI-PHLLTTDKDIIAQAQTGTGKTAAFGLPIIQMLTSRRN---- 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ + PTRELA+QV +EL + + +A GG S+ + R L+ G IVVGT Sbjct: 74 --IPQAIVLVPTRELALQVTQEL-ISFNTHDLSIAPIYGGASMTEQLRRLKKGIDIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHIR L++S + +VLDEADEML++GF +DIE I+ + +R+L+FSAT+ Sbjct: 131 PGRILDHIRRGTLDLSAIAYLVLDEADEMLNMGFIEDIEEIMHAMTGPKRVLLFSATMPD 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYHGAKNAI 248 I LA+NY + + + S QH D + V D+ +A+ I+ I Sbjct: 191 RIAALARNYMHEPDLLKVES---QHVTTDLTNQIYFEVREGDKFDALTRIIDVEPEFYGI 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF TR L E + L G++SQ +R L + + + +ATDVAARGI Sbjct: 248 VFSRTRTGADDIVAKLLERGYAAEVLHGDISQAQREKILGKFKKKQVNILVATDVAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ +L VI+ L + ++ +HR GRTGRAG +G ++ I + R+ L R + Sbjct: 308 DVSNLTHVINYSLPQDSDSYVHRIGRTGRAGNQGTAITFISPSEMRKFGFLKRTIKADIK 367 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI-----QGDEKKMVDVLLAKHDPEKIAAGFLRI 423 E P+ I +I +D LD+I G+ M LL + PE + LR Sbjct: 368 LEQLPTPADIIATKRNKIKED---LDAIVESESYGECTGMAAELLESYPPEVALSALLR- 423 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 L E++ S + R+ V + KG + L+ G++ + R Sbjct: 424 ----LAFKNELSESSY--------PEIRSIDV------DRKGKARIFLAFGARDGYDTRK 465 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-KLDKGIQLKYLGGEKPD 542 + +L + G++ I +RV D +F V D + + RT+ KL G + + + P Sbjct: 466 TVRLLKQECGLSDHDIDDVRVMEDFSFATVPFDQAEKVVRTLNKLSHGRPIAEISKDSPS 525 Query: 543 FRGYKSSGFKSKNSQDGATK 562 R S G +S ++ T+ Sbjct: 526 AR--TSGGRQSHRRRESDTR 543 >gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC 700779] gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC 700779] Length = 524 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + +IVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782] gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782] Length = 539 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|238798166|ref|ZP_04641653.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969] gi|238718020|gb|EEQ09849.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969] Length = 460 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 144/394 (36%), Positives = 213/394 (54%), Gaps = 18/394 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 19 LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLIHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAINDVIAYTPPQRQTLLFSATYPV 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q++ V V + + + I+ R ++++L ++ +A+VFC Sbjct: 191 GIEQISARVQREPVNVEV-EDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPASAVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DLELV++ EL+ +PE +HR GRTGRAG G++V PQ M RA + + V W Sbjct: 310 DLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQIKVKWT 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 PA V R A +L+ + I G K + Sbjct: 369 PAEQV----SRSANTLLEPEMVTLCIDGGRKAKI 398 >gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301] gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301] Length = 484 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 135/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVLA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E +AK G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFAKYGINQRLNVALLIGGVSFDDQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + RV +A + + R V D D V +++R Sbjct: 183 FFSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLRDLIRA 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ ++ + Sbjct: 243 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLSNFKDGKLQLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e] gi|224499403|ref|ZP_03667752.1| hypothetical protein LmonF1_06772 [Listeria monocytogenes Finland 1988] gi|224503166|ref|ZP_03671473.1| hypothetical protein LmonFR_11698 [Listeria monocytogenes FSL R2-561] gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165] gi|254832169|ref|ZP_05236824.1| hypothetical protein Lmon1_12514 [Listeria monocytogenes 10403S] gi|254898962|ref|ZP_05258886.1| hypothetical protein LmonJ_04075 [Listeria monocytogenes J0161] gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818] gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900] gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e] gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165] gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900] gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818] Length = 520 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 147/444 (33%), Positives = 238/444 (53%), Gaps = 30/444 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 13 IVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 73 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + H++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 127 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M ++R + L Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 366 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA Sbjct: 367 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAA 417 Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443 L++ L + TPV + R Sbjct: 418 MLKM----LAKEPDKTPVHITEER 437 >gi|289434525|ref|YP_003464397.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170769|emb|CBH27309.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 474 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 209/382 (54%), Gaps = 20/382 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY + T VQ+ ++ L KD++ +QTGSGKT AF + +A ++ E ++ Sbjct: 14 IKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWEENK-- 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTREL VQV E + + A G +++ +L HIVVG Sbjct: 72 ----PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PKKR+ L FSAT+ Sbjct: 128 TPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFSATMP 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ+D V + +A+E + + I + + + +++ + ++L +AI+F Sbjct: 188 DEMQDLIKRYQEDPVVIEMAAE--KTNPITH--IEMQTENKEKTLQDVLITENPDSAIIF 243 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V + +L + G L Q+ER A+ + G++R IATDVA RGID+ Sbjct: 244 CNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGRGIDV 300 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ LVI+ +L EN +HR GRTGRAG G ++ + N + N+++ + Sbjct: 301 ENVTLVINYDLPVEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDIEDMLNITIEKK 360 Query: 371 PAPSV-------EAIRERDAQR 385 P++ EA R++ +R Sbjct: 361 RKPTIIEVKASEEAFRKKQQKR 382 >gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102] gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102] Length = 598 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 199/340 (58%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+++GY + +Q+A + +D++ AQTG+GKT AF L L L S Sbjct: 58 KTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLA------SGQ 111 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV + A + V GG + L+ G +VVGT Sbjct: 112 KTPQALVLAPTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQINTLRRGVDVVVGT 171 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L+ S L+++VLDEADEML +GF DD+E+IL+ P++R++++FSAT+ P Sbjct: 172 PGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLFSATMPP 231 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+K Y KD V I +++++ I R++ V + + A+ +L G + I+F Sbjct: 232 EIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFA 291 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A + L QV L+G++ Q +R ++ +R G + +ATDVAARG+D+ Sbjct: 292 RTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVD 351 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + LVI+ ++ + E +HR GRTGRAGR G +V FV P+ Sbjct: 352 RIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPR 391 >gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a F6854] gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578] gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923] gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a F6854] gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578] gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923] Length = 522 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 147/444 (33%), Positives = 238/444 (53%), Gaps = 30/444 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 15 IVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 75 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + H++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 129 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M ++R + L Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 368 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA Sbjct: 369 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAA 419 Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443 L++ L + TPV + R Sbjct: 420 MLKM----LAKEPDKTPVHITEER 439 >gi|34763211|ref|ZP_00144175.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256846171|ref|ZP_05551629.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2] gi|27887121|gb|EAA24228.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256719730|gb|EEU33285.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2] Length = 528 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 152/507 (29%), Positives = 251/507 (49%), Gaps = 35/507 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + LS++GY + T +Q + L+ +KD++ AQTG+GKT AF L + + F Sbjct: 21 KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VVGT Sbjct: 74 LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ LK +LDEADEML++GF +DIE IL + + +RML FSAT+ Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249 I +AKN+ K+ + + S R+ + + +++RD A+ I+ I+ Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARGID Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370 Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 E P V+ + + RI+ D + +D+ KK+ LL D E I A L++ + Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 + +S V D G + +++G K + L+ Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVE 471 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + + + + I V +FV V Sbjct: 472 FIVKKAKVKQSYIKNAEVYEGFSFVSV 498 >gi|331268829|ref|YP_004395321.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925] gi|329125379|gb|AEB75324.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925] Length = 476 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 206/376 (54%), Gaps = 8/376 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I + + GY + T VQE ++ L++KD++V +QTGSGKT +FG+ + + E Sbjct: 7 NLSNEILKTIQMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIPVCEKVKLE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N + P AL + PTRELAVQ+ ++ + + G V ++ L+ Sbjct: 67 NKK------PQALILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLKQRV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR DHI + +S ++ +++DEAD+ML++GF D +E ++ S PK R ++F Sbjct: 121 HIVVGTPGRTFDHIEKGNMELSDVRYLIIDEADKMLNMGFIDQVEDVIKSLPKDRVTMLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HGA 244 SAT+ I L Y D ++ I +N +DI + SDR +++N + Y Sbjct: 181 SATLEERIEKLCVKYMNDPEKIEIDKKNVT-TDIIEQEYYDVESDRKFSLLNKIIYTERP 239 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC+T+A V + F AL G + Q++R +Q + GR +ATDVA Sbjct: 240 DSCIIFCNTKAEVGSIAVKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLVATDVA 299 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ ++ VI+ E+ + E+ +HR GRTGRAG KG S+ + + R+ + + Sbjct: 300 ARGIDIEEITHVINYEVPAEKESYVHRIGRTGRAGHKGKSITFVCEYEDRKFKSIEEYIG 359 Query: 365 VSVVWEPAPSVEAIRE 380 SV + PS E + + Sbjct: 360 YSVPKKEIPSEEEVNQ 375 >gi|60417515|emb|CAI59960.1| ATP-dependent RNA helicase (DEAD/DEAH box family) [Listeria ivanovii] Length = 474 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 20/387 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A++E GY T VQ+ ++ L KD++ +QTGSGKT AF + +A ++ E Sbjct: 9 NLSEEIKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWE 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P AL I PTRELA+QV E + + A G +++ +L Sbjct: 69 ENK------PQALIIVPTRELAMQVKAECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL DHI LN+ + +VLDE DEML +GF D +E IL PKKR+ L F Sbjct: 123 HIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L K YQ D + + +A+E + + I + + + +++ + ++L Sbjct: 183 SATMPEEMQDLIKRYQDDPIVIEMAAE--KTNPITH--IEMQTENKEKTLQDVLITENPD 238 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AI+FC+T+ V + +L + G L Q+ER A+ + G++R IATDVA Sbjct: 239 SAIIFCNTKNQVDELSDLLQ---VNTAKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAG 295 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR- 361 RGID+ ++ LVI+ +L EN +HR GRTGRAG G ++ + N + R E + + Sbjct: 296 RGIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDMEDMLKI 355 Query: 362 ---EANVSVVWEPAPSVEAIRERDAQR 385 + + E S EA R++ +R Sbjct: 356 TIEKKRKPTIIEVKASEEAFRKKQQKR 382 >gi|304414099|ref|ZP_07395467.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1] gi|304283313|gb|EFL91709.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1] Length = 635 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 169/557 (30%), Positives = 272/557 (48%), Gaps = 30/557 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+ GY + +Q + L DVL AQTGSGKT AFGL L + AE Sbjct: 25 ILSALTNLGYKKPSPIQLECIPHLLNGCDVLGMAQTGSGKTAAFGLPLLHNIKAE----- 79 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 +P L +APTRELAVQV L E+ GV V GG + R L+ G +VV Sbjct: 80 -IKSPQILVLAPTRELAVQVAEALTEFSKYIKGVNVVALYGGQRYDLQLRALRQGPQVVV 138 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ LN S L +VLDEADEML +GF +D+E I+ P + +FSAT+ Sbjct: 139 GTPGRLLDHLKRGTLNPSKLSGLVLDEADEMLRMGFIEDVENIMKQIPAVHQTALFSATM 198 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ + I S DI +V ++ A+V L AI+ Sbjct: 199 PEAIRRITRRFMKEPQEIRIQSSVTTRPDISQSYWMVDGMRKNEALVRFLESEDFDAAII 258 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R + L+ ++DGR + IATDVAARG+D Sbjct: 259 FVRTKNATLEVAEALELNGYNSAALNGDMNQALRESTLERLKDGRLNILIATDVAARGLD 318 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + + R +++ Sbjct: 319 VDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEHRERRLLKNIERTMKLTIPE 378 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLRI 423 P+ E + +R + ++ + + LL K PE+ +AA L++ Sbjct: 379 VKLPNSELLSQRRLTKFSTK--VSKQLESHDLDVYRALLTKLQPEEGFDMETLAAVLLKM 436 Query: 424 ---HRAGLCAPEEIT-PVSLVSGRDRFR-DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 R + P+ + P + +R R + R + R + + + VG Sbjct: 437 AQGERPLIMPPDPVPRPTKIHHNSERRRINGERPVR---RERRDVGDMELYRIEVGRDDG 493 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLK 534 E R ++ + I+ + IG I++ + +E+ + + RT L+K + ++ Sbjct: 494 VEVRHIVGAIANEGDISSRCIGNIKLFSSYSTIELPKSMPREILSHFTRTRILNKPMNMQ 553 Query: 535 YLGGEKP---DFRGYKS 548 LG +P RGY S Sbjct: 554 LLGDAQPFESRGRGYAS 570 >gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae Taiwan19F-14] gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503322|ref|YP_003725262.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae TCH8431/19A] gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae Taiwan19F-14] gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae TCH8431/19A] gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA04375] Length = 524 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 614 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 140/405 (34%), Positives = 223/405 (55%), Gaps = 15/405 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY + + +Q A + L +DVL AQTG+GKT AF L + S A+ ++ P Sbjct: 3 AVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ- 59 Query: 74 APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELA+QV + + A G V GG ++ L+ G H+VVGTP Sbjct: 60 ---ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTP 116 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P+KR++ +FSAT+ PA Sbjct: 117 GRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPA 176 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ Y KD V IA++ ++I R V+ + +A+ IL I+F Sbjct: 177 IRRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFAR 236 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+A + L A++G++ Q R + ++DG+ + +ATDVAARG+D+ Sbjct: 237 TKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVER 296 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSVVW 369 + V++ ++ + E+ +HR GRTGRAGR G ++ + + M R ER R+ + Sbjct: 297 ISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIERATRQPIEEMQL 356 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 PSV+A+ + R + +++ G + M LL +++ E Sbjct: 357 ---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 396 >gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989] gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989] Length = 573 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 10/381 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64 N+P+ I + L E GY + +Q A + P ++E +D+L AQTG+GKT AF L L S Sbjct: 16 NLPEAILKTLVELGYETPSPIQAASI-PIIQEGRDLLGQAQTGTGKTAAFALPLLS---- 70 Query: 65 ENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + P P L +APTRELA+QV + V GG S + R L+ Sbjct: 71 ---KIDPTKKHPQLLVLAPTRELAIQVAEAFQTYSRHMSCTVLPIYGGQSYDNQLRQLKR 127 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I+VGTPGR+ DHIR K L + L+A+VLDEADEML +GF DD+E+IL+ +PK R++ Sbjct: 128 GTQIIVGTPGRVMDHIRRKTLKLDQLEALVLDEADEMLRMGFIDDVEWILEHTPKSRQIA 187 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I +A Y + + I ++ + I R +V + + +A IL Sbjct: 188 LFSATMPKEIKKVADKYLVNPKHIKIETKTSTATTIRQRFSIVNRNQKLDAFTRILEVED 247 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ + + L+ AL+G++ Q +R N ++ ++ G + IATDV Sbjct: 248 FDGVIVFVRTKVATLELAEKLSARGHSCAALNGDIPQNQRENIVEKLKRGTLDILIATDV 307 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 ARG+D+ + VI+ ++ + E+ +HR GRTGRAGR G ++ + + + R+ Sbjct: 308 VARGLDVKRISHVINYDIPLDTESYVHRIGRTGRAGRSGEAILFVTSRERHLLRAIERDT 367 Query: 364 NVSVVWEPAPSVEAIRERDAQ 384 N V PS + ++ A+ Sbjct: 368 NSVVEPMDVPSASDVNQKRAE 388 >gi|302392742|ref|YP_003828562.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM 5501] gi|302204819|gb|ADL13497.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM 5501] Length = 527 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 165/541 (30%), Positives = 266/541 (49%), Gaps = 37/541 (6%) Query: 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K FE N+ I +A+ + G+ T +Q + L KDV+ AQTG+GKT AFG+ + Sbjct: 4 KQFEELNLSNEITKAVEDMGFEEATPIQTEAIPHLLAGKDVIGQAQTGTGKTAAFGIPIL 63 Query: 60 STLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRE 117 ++ P + AL + PTRELA+QV E+ L K + GG S+ R+ Sbjct: 64 -------EKIDPDDKSVQALVLCPTRELAIQVSEEIGRLAKYKRKIKTLPVYGGQSIKRQ 116 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 + L+ G IV+GTPGR DH+R L +LK V+LDEADEML++GFRDDIE IL+ Sbjct: 117 IKALKKGVQIVIGTPGRTMDHMRRGTLKFDNLKMVILDEADEMLNMGFRDDIETILEGVK 176 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 KR+ + FSAT+ +I L K YQ D V + + +I+ V ++ + Sbjct: 177 GKRQTIFFSATMPQSILKLRKKYQTDPEIVKVVHKKLTVPNIEQGYFEVNRRNKLEVLSR 236 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ + K +IVFC+TR V T L + V + G L+Q +R + ++G Sbjct: 237 LIDIYNPKLSIVFCNTRKQVDELTIQLQARGYFVDGIHGGLNQPQRDRVMNKFKNGTIET 296 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA 356 +ATDVAARGID+ D+E V + ++ + E +HR GRTGR GR+G + FV+ + + + Sbjct: 297 LVATDVAARGIDVDDVEAVFNYDIPQDIEYYVHRIGRTGRVGRQGYAFTFVVGKEI-YQL 355 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAK-HDP 413 +++ + A + + PSV + E + +L + + E K+++ L+ + + Sbjct: 356 KKIEKYAKTKIERKQVPSVSDVEESKMELLLDRVSEILENENLAQETKLIEELVEEDYVS 415 Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473 IAA L+ LV R+ + G + G +++ Sbjct: 416 IDIAAALLK----------------LVMDREEQEGAEKVESFGDTGAE--PGMVRLFINI 457 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533 GSKQ ++ + + I +G I + TFVEV + + +K+ K Q+ Sbjct: 458 GSKQNVSPGDVVGAIAGETSIPGNVVGLIDIYDKFTFVEVPR---EYAKEVLKIMKNNQI 514 Query: 534 K 534 K Sbjct: 515 K 515 >gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP23-BS72] gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP23-BS72] Length = 511 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65] gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65] Length = 614 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 147/421 (34%), Positives = 233/421 (55%), Gaps = 22/421 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY + +QE + L KDVL AQTG+GKT AF L L + E Sbjct: 20 AIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPLLARTQNE------VR 73 Query: 74 APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L +APTRELA QV +E + ++ V VA GG + R L+ G VVGTP Sbjct: 74 EPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQGPQWVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHIR L + ++AVVLDEADEML +GF DD++++LD P+KR++ +FSAT+ Sbjct: 134 GRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIALFSATMPKQ 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + ++ + I S+ + I+ + LV D++ A++ I +VF Sbjct: 194 IKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRICETSEFDAMMVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + H + AL+G+++Q +R A+ ++ G+ + +ATDVAARG+D+ Sbjct: 254 TKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDVAARGLDVER 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVW 369 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P+ M ER+ R+ + Sbjct: 314 ISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTIERVTRKKIQQIEL 373 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKH---DPEKIAAGFLR 422 A V A R RD ++ L+ I+G + KK+ +LA+ DP ++AA F + Sbjct: 374 PTAKEVNAKR-RDQFKVRA----LEHIEGRDIEIFKKIASEILAEQPALDPIELAAAFAQ 428 Query: 423 I 423 + Sbjct: 429 M 429 >gi|229823669|ref|ZP_04449738.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271] gi|229786906|gb|EEP23020.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271] Length = 518 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 206/355 (58%), Gaps = 9/355 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q + ++L++ G+ T +Q+ + L +D++ AQTG+GKT AFGL + Sbjct: 1 MKFTELNLIQPLLDSLADMGFEEPTPIQQQAVPVALEGQDLIGQAQTGTGKTAAFGLPML 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + L SA L +APTRELA+QV EL L + V GG S+ ++ Sbjct: 61 NKLDKNQ------SAIQGLVVAPTRELAIQVQEELYRLGKYQRARIYVVYGGSSIGKQIE 114 Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 ++ N IVVGTPGR+ D +R K L++ HLK +VLDEADEML++GF +D++ I+ ++P Sbjct: 115 WIKRNQPQIVVGTPGRILDLMRRKALSLKHLKTLVLDEADEMLNMGFIEDVKEIVATTPA 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ L+FSAT+ P I +LA + K+ V I ++ I+ + ++ + + Sbjct: 175 SRQTLLFSATMPPEIRSLADQFLKEPAHVKIEAKQMTADLIEQFFIKCRDDEKFDIFTRL 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L AIVFC T+ V + L+ + + G++ QQ+R++ + R G+ + Sbjct: 235 LDVQMPTQAIVFCRTKKRVDEVARGLSLRGYNAELIHGDIPQQKRTSVINAFRQGQVELL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARG+D+ + V + ++S +PE+ +HR GRTGRAG +GMS+ FV P M Sbjct: 295 VATDVAARGLDISGVTHVYNYDISQDPESYVHRIGRTGRAGNEGMSITFVTPAEM 349 >gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353] gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72] Length = 523 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405] gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057] Length = 523 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPNHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115] Length = 523 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNRIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus vestibularis F0396] gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus vestibularis F0396] Length = 529 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 127/348 (36%), Positives = 202/348 (58%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL + + E Sbjct: 7 NLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+ P++R+ L+F Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI + + KD V I ++ + ++D + V ++ + + ++ + Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEM 348 >gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355] Length = 523 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293] gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM 11293] Length = 542 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 152/507 (29%), Positives = 248/507 (48%), Gaps = 26/507 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +A+ ++G+ T++Q + L + +++ AQTG+GKT AFGL L D P Sbjct: 18 DAIVKKGFEEPTTIQARTIPVMLHSDANIIAQAQTGTGKTAAFGLPLL-------DLVDP 70 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 S + AL + PTRELA+QV E+ V + GG S+ ++ R L+ G IVVG Sbjct: 71 VSRTVQALVLVPTRELAIQVSEEINSFRGSKKVRIVPIYGGQSIDQQLRRLKQGVQIVVG 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ K LN++ + ++LDEADEML++GF D++E IL + +R L+FSAT+ Sbjct: 131 TPGRIIDHLNRKTLNLTAISHLILDEADEMLNMGFIDEMEEILKHTNPDKRTLLFSATMP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA +Y + + + E + + V SD+ A+ I+ + +VF Sbjct: 191 DKIKKLANDYMEGYELIAVEKEQLTTNLTEQIYFEVKASDKFEALCRIIDIEDSFYGLVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V L + + L G++SQ +R L + + +ATDVAARGID+ Sbjct: 251 CRTKNDVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINILVATDVAARGIDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 +L VI+ L +PE +HR GRTGRAG +G ++ I + +R + + + Sbjct: 311 NNLTHVINYSLPQDPEAYVHRIGRTGRAGNEGTAITFITPSEYKRLMFIRKITKTDIKKS 370 Query: 371 PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFLRIHRA 426 P V I + ++I +D +F I L + P +I A L + Sbjct: 371 QLPKVADIIDAKRKKIDEDLGAIFTKEIDQSYYDWAKRWLEESGKSPSQILAALLSLSFN 430 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 P ++ V G DR S+ + G++ +++G K + R L+ Sbjct: 431 DDLNPNSYGEIAEVRGGDR-------------SQIDHHGTARLFVALGKKDRITPRQLID 477 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513 +L S + + IG I++ + +FV V Sbjct: 478 LLTSRSPVRPKQIGDIQIMENFSFVTV 504 >gi|260495553|ref|ZP_05815678.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33] gi|260196895|gb|EEW94417.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33] Length = 528 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 152/507 (29%), Positives = 251/507 (49%), Gaps = 35/507 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + LS++GY + T +Q + L+ +KD++ AQTG+GKT AF L + + F Sbjct: 21 KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VVGT Sbjct: 74 LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ LK +LDEADEML++GF +DIE IL + + +RML FSAT+ Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPE 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249 I +AKN+ K+ + + S R+ + + +++RD A+ I+ I+ Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARGID Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370 Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 E P V+ + + RI+ D + +D+ KK+ LL D E I A L++ + Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 + +S V D G + +++G K + L+ Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKARLFIAMGRKDGMTPKKLVE 471 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + + + + I V +FV V Sbjct: 472 FIVKKAKVKQSYIKNAEVYEGFSFVSV 498 >gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae TIGR4] gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae R6] gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae TIGR4] gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39] gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP11-BS70] gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS69] gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1087-00] gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae SP195] gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae MLV-016] gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI 1974] gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI 1974M2] gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS455] gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP-BS293] gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS292] gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS397] gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS457] gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS458] gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae AP200] gi|61223743|sp|P0A4D7|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName: Full=Exported protein 9 gi|61223744|sp|P0A4D8|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName: Full=Exported protein 9 gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae TIGR4] gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39] gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP11-BS70] gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS69] gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC1087-00] gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae SP195] gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae MLV-016] gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104] gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200] gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS455] gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP14-BS292] gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP-BS293] gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS458] gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS457] gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae BS397] gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae AP200] gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA17570] gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA41317] gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA47368] gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae GA47901] Length = 524 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] Length = 634 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 159/521 (30%), Positives = 263/521 (50%), Gaps = 31/521 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL + G+V T +Q A + L +D L AQTG+GKT AF L L + + L +++ Sbjct: 20 ALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLKQHN----- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L GAHI+VGT Sbjct: 75 --PQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSRGAHIIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D + LN+ + +LDEADEML +GF DD+ +IL+ +P + ++FSAT+ P Sbjct: 133 PGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILFSATMPP 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + T+ Y ++ RV++A N ++ +V ++D A+ +L +IVF Sbjct: 193 MVKTIVDRYLREPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETEETDASIVFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR R L+ F+ AL G++ Q +R + +++G + +ATDV ARG+D+P Sbjct: 253 RTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVATDVVARGLDVP 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N R + R ++ Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTIERVTKSTMEEIQ 372 Query: 372 APSVEAIRE----RDAQRILQDPLF--LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 P + + E A + D F LD+ K+ + L + D IAA L+ + Sbjct: 373 LPHRDQVAECRLAALAAELQADKEFVALDAFTDLINKLQETL--EIDATTIAAMLLK-RQ 429 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG-----------GSRDNFKGSSW--FSLS 472 G P +++ +R ++ G G R + + + L Sbjct: 430 QGKRPLFYKGPDPMIAAMERAKNRRSDRGERGERGGRGDRPERGERRQYNNDDFDTYQLE 489 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 VG +Q + + ++ L G + SIGAI++ P T+V++ Sbjct: 490 VGREQGVQVKDIVGALANELGFTKGSIGAIKLAPGHTYVQL 530 >gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087] Length = 523 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + + KDV+ AQTG+GKT AFG + +N PA AL Sbjct: 20 GFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L ++ ++ ++LDEADEML++GF +DIE I+ P++R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V +++ + + ++ + +IVF T+ V Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|238761773|ref|ZP_04622747.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC 33638] gi|238699887|gb|EEP92630.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC 33638] Length = 658 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 176/569 (30%), Positives = 277/569 (48%), Gaps = 51/569 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72 AL++ GY + +Q + L +DVL AQTGSGKT AFGL L + P Sbjct: 21 ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI-------DPTL 73 Query: 73 SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELA+QV + L ++ GV V GG + R L+ G +VVGT Sbjct: 74 KAPQVLVLAPTRELAIQVAQALTDFSKHMDGVNVVALYGGQRYDVQLRALRQGPQVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 134 PGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPE 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250 AI + + + K+ V I S DI V ++ A+V L AI+F Sbjct: 194 AIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVRFLESEDFDAAIIF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + AL+G+++Q R L ++DGR + IATDVAARG+D+ Sbjct: 254 VRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDILIATDVAARGLDV 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + + R +++ Sbjct: 314 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNVERTMKLTIPEV 373 Query: 371 PAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGF 420 P+ E + ER A ++ Q ++ + M LLAK PE+ +AA Sbjct: 374 QLPNAELLGERRLAKFAAKVGQ------QLESSDLDMYRALLAKLQPEEEFDLETLAAAL 427 Query: 421 LRI---HRAGLCAPEEI-TPVSLVSGRD-------RFRDDS----RAFKVGGGSRD---- 461 L++ R + PE P + RD R R+DS R+ GG R Sbjct: 428 LKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGRDRNDSRREPRSDNRDGGERPARRE 487 Query: 462 --NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SA 515 + + + VG E R ++ + I+ + IG I++ + +E+ Sbjct: 488 RRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 547 Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 + + RT L+K + ++ LG +P R Sbjct: 548 EMLSHFTRTRILNKPLNMQLLGDAQPHER 576 >gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R] gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R] Length = 729 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 162/533 (30%), Positives = 273/533 (51%), Gaps = 36/533 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + +A+ + GY + +Q + + +DV+ AQTG+GKT AF L + S + Sbjct: 109 LPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILSRI---- 164 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 D+ +P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 165 DK--SVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGA 222 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F Sbjct: 223 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALF 282 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L+K Y + + + SE R +++I R + VA ++ +A+ IL + Sbjct: 283 SATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFE 342 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 343 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 402 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 403 RGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 462 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVL--------LAKHDP-EK 415 + P+V+ + D +++ F DSI E K +D+ A P E Sbjct: 463 PLHEMELPTVDQV--NDFRKV----KFADSITKSLEDKQMDLFRTLVKEYSQANDVPLED 516 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG------------SRDNF 463 IAA ++G +E+ P R D G RD+ Sbjct: 517 IAAALATQAQSGDFLLKELPPERRERNDRRRDRDFDDRGGRGRDRGDRGDRGSRFDRDD- 575 Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + + + L+VG +Q ++ L G+N + G I + D T VE+ D Sbjct: 576 ENLATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKD 628 >gi|46907469|ref|YP_013858.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b str. F2365] gi|47093505|ref|ZP_00231267.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b H7858] gi|226223849|ref|YP_002757956.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes Clip81459] gi|254824696|ref|ZP_05229697.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194] gi|254852700|ref|ZP_05242048.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503] gi|254932440|ref|ZP_05265799.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262] gi|255522060|ref|ZP_05389297.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes FSL J1-175] gi|300765280|ref|ZP_07075264.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017] gi|46880737|gb|AAT04035.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b str. F2365] gi|47018123|gb|EAL08894.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b H7858] gi|225876311|emb|CAS05020.1| Putative ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606021|gb|EEW18629.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503] gi|293583997|gb|EFF96029.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262] gi|293593935|gb|EFG01696.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194] gi|300513963|gb|EFK41026.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017] gi|332311691|gb|EGJ24786.1| ATP-dependent RNA helicase dbpA [Listeria monocytogenes str. Scott A] Length = 470 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 137/382 (35%), Positives = 211/382 (55%), Gaps = 20/382 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T VQ+A++ L +D++ +QTGSGKT AF + +A + E ++ Sbjct: 10 IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQIEWEENK-- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELA+QV E + V A G +++ +L HIVVG Sbjct: 68 ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PK+R+ L FSAT+ Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ D + + +ASE + + I + V + +++ + ++L +AI+F Sbjct: 184 EEMQDLIKRYQDDPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIF 239 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T +L +V + G L Q++R A+ + G++R IATDVA RGID+ Sbjct: 240 CNTKNQVDELTDLLD---VKVSKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ LVI+ +L EN +HR GRTGRAG+ G ++ + N + +V++ + Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVTIEKK 356 Query: 371 PAPSV-------EAIRERDAQR 385 P+V EA R++ +R Sbjct: 357 RKPTVIEVKANEEAFRKKQQKR 378 >gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196] gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC 25196] Length = 510 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 134/378 (35%), Positives = 213/378 (56%), Gaps = 8/378 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 N+ I A++++GY + T +Q + L +D++ +AQTG+GKT +F L + + L + Sbjct: 7 NLTPEILRAIADQGYTDPTPIQTQAIPHILEGRDIMGAAQTGTGKTASFTLPMLNLLQSG 66 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 N SPA P+ L + PTRELA+QV ++ + A GGV + + R+L+ Sbjct: 67 ANTSASPARHPIRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQTRELRA 126 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I+V TPGRL DH++ K +N+S ++ ++LDEAD MLD+GF DI+ IL P +R+ L Sbjct: 127 GVEILVATPGRLLDHVQQKAINLSKVEILILDEADRMLDMGFLPDIKRILALLPSQRQSL 186 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT S I LA ++ V V +A N I + V + + ++++ Sbjct: 187 MFSATFSDEIKKLAGKLLREPVLVEVARRNTITELITHVVHPVVRERKRELLAHLIKSQD 246 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF T+ SR L A+ G+ +Q +R+ AL + G RV +ATDV Sbjct: 247 LQQVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGVVRVLVATDV 306 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360 AARG+D+ +L V++ EL +NPE+ +HR GRTGRAG KG +V ++ ++ + + E+L Sbjct: 307 AARGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDEAELLKGIEKLL 366 Query: 361 R---EANVSVVWEPAPSV 375 + E+ V +EP V Sbjct: 367 KFKLESKVVPGFEPETPV 384 >gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2] Length = 588 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 144/426 (33%), Positives = 220/426 (51%), Gaps = 17/426 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ I +AL + GY + +Q + L D+L AQTG+GKT AF L + + + E Sbjct: 13 KLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDPE 72 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQN 123 + P L +APTRELA+QV + +YA + V GG S + R L+ Sbjct: 73 QRK------PQLLVLAPTRELAIQVAEAFQ-VYASFSHKIKVLPVYGGQSYDNQIRQLKR 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGR+ DHI+ K L++S LK +VLDEADEML +GF DD+E IL +P +R+ Sbjct: 126 GVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPAERQTA 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + + Y KD V IAS+ S I R VA + A+ I+ Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRIMEVER 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + L+ + V L+G++ Q R + ++ G + +ATDV Sbjct: 246 FDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 ARG+D+ + VI+ ++ + E+ +HR GRTGRAGR G ++ I +R + + Sbjct: 306 VARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHREKRMLFSIEKTT 365 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL------AKHDPEKIA 417 + P PS+ I E R Q +D+ Q D + + L+ A+ PE + Sbjct: 366 KQPIEVMPIPSISEINETRLSRFKQS--VIDATQDDSIETLIPLVEMIKEEAEASPEVLM 423 Query: 418 AGFLRI 423 A L+I Sbjct: 424 AALLKI 429 >gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1] gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1] Length = 482 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|88799091|ref|ZP_01114671.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297] gi|88778074|gb|EAR09269.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297] Length = 579 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 168/566 (29%), Positives = 271/566 (47%), Gaps = 25/566 (4%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ + L GY T +Q + L DVL AQTG+GKT AF L L S + ++ Sbjct: 15 VLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLSRIDTTKNK- 73 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + PTRELA+QV + YA+ V GG + + R L+ + Sbjct: 74 -----PQALVLCPTRELAIQVAEAFQ-TYARGVDNFHVLPIYGGADMRNQLRALKQNPQV 127 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +VGTPGR+ DH+R L++S LK +VLDEADEML +GF +DI++IL+ +PK ++ +FSA Sbjct: 128 IVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALFSA 187 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I + YQKD V++ I + + + I+ D+ + + IL Sbjct: 188 TMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRILEIEDWNAI 247 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F TR ++ LA + ALSGE++Q++R + L M+ G+ + IATDVAARG Sbjct: 248 IIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIATDVAARG 307 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 ID+ + VI+ ++ + HR GRTGRAGR G ++ QR + R + Sbjct: 308 IDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDIERATKSEL 367 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427 + P PS E + E A ++ I+ D+ ++ E L I + Sbjct: 368 IDYPMPSAEKLGEHRAAAF--KSTVVEHIEADKLDYFKAMITSWVDEG-EHSLLDIAASM 424 Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS-----RDNFKGSSWFSLSVGSKQKAEAR 482 +E P+ L + R + G RD + + L VG + +AE Sbjct: 425 ALMAQEDKPLQLPKDPEPRPRRDREDRPTRGESRNRRRDLDYAAITYRLDVGRRDRAEPG 484 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-----DLLRRTVKLDKGIQLKYLG 537 ++ + GI + I I ++ + T V++ DG+ + L++T + + L+ Sbjct: 485 SIVGAIANEGGIEGKFINNIDIKENFTLVDLP-DGMPTEIFEQLKKTRVKGRPLNLRVWK 543 Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKR 563 E P + K G + + +DG ++ Sbjct: 544 DEAP--KDGKDRGNRRPSRRDGGDRK 567 >gi|192361806|ref|YP_001982445.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107] gi|190687971|gb|ACE85649.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107] Length = 625 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 129/341 (37%), Positives = 201/341 (58%), Gaps = 10/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71 +A+ GY + +Q A + L D+L AQTG+GKT AF L L S L L++N+ Sbjct: 42 KAIQAVGYEVPSPIQAAAIPILLDGGDILGMAQTGTGKTAAFALPLLSKLDLSQNE---- 97 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L +APTRELA+QV + A G V GG + + R L+ G H+VVG Sbjct: 98 ---PQILVLAPTRELAIQVAEAFQKYAADMPGFHVLPIYGGQDMTSQLRQLKRGVHVVVG 154 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R LN+++LK++VLDEADEML +GF DD+E+IL+ +P+ R+ +FSAT+ Sbjct: 155 TPGRVMDHLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWILEHTPETRQTALFSATMP 214 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A NY +DA + IAS + +I+ +V+ +++ +A+ IL I+F Sbjct: 215 REIRKVADNYLRDAKEIKIASTQQTGDNIEQVYWMVSGTNKLDALTRILEVEPFDGMIIF 274 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + L+G+++QQ R ++ ++ + + IATDVAARGID+ Sbjct: 275 VRTKTATVELAEKLEARGYSAAPLNGDMNQQLRERTIERLKTSKLDIVIATDVAARGIDV 334 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + V++ ++ + E +HR GRTGRAGR G ++ FV P+ Sbjct: 335 ERVSHVVNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPR 375 >gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila DC2201] gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila DC2201] Length = 719 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 156/509 (30%), Positives = 259/509 (50%), Gaps = 18/509 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY + +Q A + L +DV+ AQTG+GKT AF + S L +D P Sbjct: 90 ALDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSKLAELSDLHGPQR 149 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + L +APTRELA+QV + V GG S + L+ GA +VVGTP Sbjct: 150 STRVLVLAPTRELALQVAEAFGSYATHLEDFTVLPVYGGSSYGPQLAGLKRGAQVVVGTP 209 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L + + VVLDEADEML +GF +D+E IL +P ++++ +FSAT+ A Sbjct: 210 GRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPVEKQVALFSATMPKA 269 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ Y +D + + ++ ++ R + V + +A+ +L IVF Sbjct: 270 IRRIAQQYLRDPQEITVKAKTTTGTNTRQRYMQVMGPHKLDAMTRVLEVEDYDGVIVFVR 329 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+A+ L + A++G++ Q R + +R+G+ + +ATDVAARG+D+ Sbjct: 330 TKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDILVATDVAARGLDVER 389 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVW 369 + LV++ ++ + E+ +HR GRTGRAGRKG ++ F+ P+ + R E+ R+ + Sbjct: 390 ISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIEKATRQPVEQMRV 449 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE--KIAAGFLRIHRAG 427 V R+ + + +++ + + + G +++V+ ++HD + +IAA I + G Sbjct: 450 PTTDEVNQTRKDNFAQQIEETIESEDL-GLFRELVERYESEHDVDAVEIAAALAVIAQNG 508 Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-----NFKGSSWFSLSVGSKQKAEAR 482 E P RDR R D G G R+ + G + L+VG + + Sbjct: 509 RPFLVEDLPEMPQRKRDRERRD------GDGPRNRRSPGDEAGMKTYKLAVGHRDRVVPG 562 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFV 511 ++ L G+N IGAI ++P T V Sbjct: 563 AVVGALTHEGGLNGSQIGAIDIRPTFTLV 591 >gi|19552380|ref|NP_600382.1| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] Length = 732 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 163/535 (30%), Positives = 273/535 (51%), Gaps = 38/535 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + +A+ + GY + +Q + + +DV+ AQTG+GKT AF L + LA Sbjct: 109 LPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPI----LARI 164 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 D+ +P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 165 DK--SVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGA 222 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F Sbjct: 223 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALF 282 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L+K Y + + + SE R +++I R + VA ++ +A+ IL + Sbjct: 283 SATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFE 342 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 343 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 402 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 403 RGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 462 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVL--------LAKHDP-EK 415 + P+V+ + D +++ F DSI E K +D+ A P E Sbjct: 463 PLHEMELPTVDQV--NDFRKV----KFADSITKSLEDKQMDLFRTLVKEYSQANDVPLED 516 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG--------------SRD 461 IAA ++G +E+ P R D G RD Sbjct: 517 IAAALATQAQSGDFLLKELPPERRERNDRRRDRDFDDRGGRGRDRDRGDRGDRGSRFDRD 576 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + + + + L+VG +Q ++ L G+N + G I + D T VE+ D Sbjct: 577 D-ENLATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKD 630 >gi|261820728|ref|YP_003258834.1| ATP-dependent RNA helicase DbpA [Pectobacterium wasabiae WPP163] gi|261604741|gb|ACX87227.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae WPP163] Length = 490 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 135/343 (39%), Positives = 198/343 (57%), Gaps = 11/343 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY ++T VQ A L L DV A+TGSGKT AFG+ L ++ + F+ Sbjct: 49 LNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD--FTTQ-- 104 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV +EL L +A+ ++ +C GG + ++ L + HIVVGTP Sbjct: 105 --ALVLCPTRELADQVSKELRRLARFAQNIKILTLC-GGQPMGQQLDSLVHAPHIVVGTP 161 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R + L++ LK +VLDEAD MLD+GF D I+ ++ +P R+ L+FSAT Sbjct: 162 GRIQDHLRKRSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPEE 221 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ R IA +N + S I+ R R ++ IL ++ + +VFC+ Sbjct: 222 IEQISARVQRQPQRFEIA-DNVEESAIEQRFYETTKEQRLPLLIAILSHYQPASCVVFCN 280 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L V AL G+L Q++R L + RV +ATDVAARG+D+ + Sbjct: 281 TKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKE 340 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 L LV++ EL+ +PE +HR GRTGRAG +G++V PQ M R Sbjct: 341 LALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNR 383 >gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 543 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 155/518 (29%), Positives = 261/518 (50%), Gaps = 41/518 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ + G+ T +Q + + D++ +QTG+GKT AFG+ + A+ Sbjct: 10 NLSNEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGIPVLEKTNAK 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 N A ++ + PTRELA+QV EL+ K G+ + GG + R+ L G Sbjct: 70 N------KAVQSVILCPTRELAIQVAEELKLFSKYKKGINIVPVYGGQPIQRQMIALSKG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A IV+GTPGR+ DH+ + L + V+LDEADEMLD+GFRDDIE IL S P+ R+ + Sbjct: 124 AQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPEGRQTVF 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ +L K YQ + + SE I+ + + A+ L + Sbjct: 184 FSATMPKEFLSLTKKYQHSPETIKVVSEKLTVPSIEQYYFDIKEHQKLEALTRCLDMYDP 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K ++VFC+T+ V T L + A+ G+++Q +R+ + R+G + IATDVA Sbjct: 244 KLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIELLIATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR-RAERLFRE 362 ARGID+ +++V + ++ + E+ +HR GRTGRAG+ G + FV +++ + R + + + Sbjct: 304 ARGIDVDGIDMVFNFDVPKDDEDYVHRIGRTGRAGKAGKAYSFVSGKDIYKLRDIQRYTK 363 Query: 363 ANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 AN+ + P+ VE +E + LD ++ +L + D EK A Sbjct: 364 ANIKRMQVPSLADVENTKE---------TIMLDKVKE--------VLKEKDLEKYAG--- 403 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRF------RDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 A +EIT + + + + R+ + + G+ + + + F +++G Sbjct: 404 ---MAESLISDEITSLDVAAALLKIMLASEKREQEQKADI-SGNINKYSMTRLF-INIGK 458 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 K A + + +GIN IG I++ +FVEV Sbjct: 459 KNGVRAGDFVGAITGETGINGSLIGDIKILDAFSFVEV 496 >gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105] gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105] Length = 539 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 206/358 (57%), Gaps = 13/358 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69 I +A+ +GY T +Q + + DV+ +AQTG+GKT F L + + L+ + Sbjct: 31 IQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILNRLMPLATENT 90 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + V GGV ++ + + L+ G +V Sbjct: 91 SPARHPVRALILTPTRELADQVAANVHTYAKFTPLRSTVVYGGVDINPQIQTLRRGVELV 150 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K +N+ ++ +VLDEAD MLD+GF D++ I++ PK R+ L+FSAT Sbjct: 151 IATPGRLLDHVQQKSINLGQVQVLVLDEADRMLDMGFLPDLQRIINLLPKTRQNLLFSAT 210 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRYHGAK 245 SP I LAK++ + +A N +I + V+ AL D+ A+ ++++ Sbjct: 211 FSPEIQKLAKSFMVSPTLIEVARRNATSENI--KQVIFALDSEEDKRMAVCHLIQSKALS 268 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF +T+ +R + L + A+ G+ +Q ER+ +L+ + G V +ATDVAA Sbjct: 269 QVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIERTKSLEAFKAGEVTVLVATDVAA 328 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFRE 362 RG+D+ DL VI+ +L + PE+ +HR GRTGRAG KG + FV+ +R ER ++ Sbjct: 329 RGLDIADLPCVINYDLPTTPEDYVHRIGRTGRAGAKGTAYSFVV-----KRDERALKD 381 >gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812] gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812] Length = 530 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 DKIDTSRNLVQ------ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPET 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ AI + + ++ V +A++ +D + V D+ + + ++ Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L ++ + G+L Q +R L+ ++ + + Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG++G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKQGQSITFVAPNEM 348 >gi|194333556|ref|YP_002015416.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194311374|gb|ACF45769.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii DSM 271] Length = 607 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 161/521 (30%), Positives = 254/521 (48%), Gaps = 36/521 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL + GY N T +Q + L+ +DVL AQTG+GKT AF L + S + + + Sbjct: 44 EALDKVGYENPTPIQLQTIPYILQGRDVLGQAQTGTGKTAAFALPILSRIDCDKN----- 98 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL + PTRELA+QV + + V GG + + L+ G H+VVGT Sbjct: 99 -YPQALVLTPTRELAIQVAEAFQRYAACMPDFHVLPIYGGQDYAGQLKRLKRGVHVVVGT 157 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI+ L + L +VLDEADEML +GF DD+E+IL+ +P R++ +FSAT+ Sbjct: 158 PGRVIDHIKRSSLKLDKLHTLVLDEADEMLRMGFVDDVEWILEQTPASRQVALFSATMPS 217 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + D + I S++ I R + V + A+ IL I+F Sbjct: 218 VILRIARKHLSDPAEITIKSKSSTVDAITQRFLTVGAHHKLEALTRILEAEPFDGVIIFV 277 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR + ++ L + ALSGE+ Q +R + +++G+ + +ATDVAARG+D+ Sbjct: 278 RTRTATQDLSEKLRARGYAAAALSGEMVQHQREKTIDQLKNGKLNIIVATDVAARGLDVE 337 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSVV 368 + VI+ ++ S+ E+ +HR GRTGRAGR G ++ + +M R ER R S+ Sbjct: 338 RVTHVINYDIPSDTESYVHRIGRTGRAGRSGDAILFVTSREMSMLRTIERAVRR---SID 394 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIAAGFLRIHRA 426 PS E I ++ + Q + S + E +V+ HD + A A Sbjct: 395 RMELPSAEMINDKRIAKFKQQISDVISTEDLEVFSDLVEQYCRDHDSTMLQAA------A 448 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS--------------WFSLS 472 L + T LVS + D SR+ G R + + SS F + Sbjct: 449 ALAFMVQGTTPLLVSA-EPLHDTSRSQSQGRQKRTDRRSSSRGDSLPFSQQDGTETFRIE 507 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 VG + + + +G+ S+G I +Q + + V++ Sbjct: 508 VGKVHGVKPGNIAGAIINETGLPADSVGRISIQEEYSTVDL 548 >gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein) [Xanthomonas albilineans GPE PC73] gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein) [Xanthomonas albilineans] Length = 657 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 137/380 (36%), Positives = 213/380 (56%), Gaps = 13/380 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY + + +Q A + L +D+L AQTG+GKT AF L + S L + Sbjct: 22 KAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRLDFAQRK---- 77 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV + A G V GG ++ L+ G H+VVGT Sbjct: 78 --PQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF DD+E +L P+ R++ +FSAT+ Sbjct: 136 PGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQSRQVALFSATMPA 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y D V IAS+ ++I R V+ + +A+ IL I+F Sbjct: 196 AIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALTRILEVEPFDAMIIFA 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A + L A++G++ Q +R +Q ++DG+ + +ATDVAARG+D+ Sbjct: 256 RTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P+ M R ER R+ + Sbjct: 316 RISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRAIERATRQPIEEMQ 375 Query: 369 WEPAPSVEAIRERDAQRILQ 388 PSV+A+ ++ R ++ Sbjct: 376 L---PSVDAVNDQRVSRFME 392 >gi|304396354|ref|ZP_07378235.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] gi|304355863|gb|EFM20229.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] Length = 642 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 175/569 (30%), Positives = 275/569 (48%), Gaps = 51/569 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E+L+ GYV + +Q + L +DVL AQTGSGKT AF L L + Sbjct: 17 ILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------D 69 Query: 71 PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P AP L +APTRELAVQV + E+ G+ V GG + R L+ G +V Sbjct: 70 PTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVV 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL DH++ L++S+L+ +VLDEADEML +GF +D+E I+ P + +FSAT Sbjct: 130 VGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPADHQTALFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI + K + KD V I S DI ++ A + +A+V L AI Sbjct: 190 MPEAIRRITKRFMKDPQEVRIQSSLTTRPDIS-QSYWTAYGRKTDALVRFLEAEDFDAAI 248 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 249 IFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 308 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 309 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 368 Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418 P+ E + ER A ++ Q L+S D+ + LLAK P E +AA Sbjct: 369 EVELPNAELLGERRLAKFAAKVQQQ---LESSDLDQYR---ALLAKMQPEDEMDLETLAA 422 Query: 419 GFLRI---HRAGLCAPEEITPVSLVSGR---------------DRFRDDSRAFKVGGGSR 460 L++ R + PE P DR ++R + G R Sbjct: 423 ALLKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARGDRAPRENRESRDGDRPR 482 Query: 461 DNFKG---SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---- 513 + + + VG E R ++ + I+ + IG I++ + +E+ Sbjct: 483 RERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGM 542 Query: 514 SADGVDLLRRTVKLDKGIQLKYLGGEKPD 542 D + RT L+K + ++ LG +P+ Sbjct: 543 PGDVLQHFTRTRILNKPMNMQLLGDAQPN 571 >gi|299533009|ref|ZP_07046396.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44] gi|298719233|gb|EFI60203.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44] Length = 469 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 198/360 (55%), Gaps = 24/360 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73 L + GY +T +Q A L L+ KD++ A TGSGKT AFGL + DR +P Sbjct: 29 LQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMV-------DRLNPRWF 81 Query: 74 APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL + PTRELA QV E+ L A+ + V GGV + L+NGAHIVVGTP Sbjct: 82 AVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLENGAHIVVGTP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L+I +LK +VLDEAD MLD+GF DIE ++ P R+ L+FSAT Sbjct: 142 GRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTLLFSATYPDG 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + +D V +A+ QHS I R V D+ + + +L + +++I F Sbjct: 202 IASLASRFMRDPQTVKVAT---QHSAGKIAQRWYEVGARDKVDTVAKLLAHFRPESSIAF 258 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ L F +AL GEL Q+ER L + V +ATDVAARG+D+ Sbjct: 259 CNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAARGLDI 318 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----------QNMQRRAERLF 360 DL VI+ +++ +PE +HR GRTGR +G+++ ++ + +Q RA + F Sbjct: 319 ADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIEQLQGRASQFF 378 >gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus salivarius SK126] gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus salivarius SK126] Length = 528 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 127/348 (36%), Positives = 201/348 (57%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL + E Sbjct: 7 NLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+ P++R+ L+F Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI + + KD V I ++ + ++D + V ++ + + ++ + Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEM 348 >gi|28211624|ref|NP_782568.1| ATP-dependent RNA helicase [Clostridium tetani E88] gi|28204066|gb|AAO36505.1| ATP-dependent RNA helicase [Clostridium tetani E88] Length = 524 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 159/522 (30%), Positives = 265/522 (50%), Gaps = 37/522 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ + G+ + +Q ++ L+ DV+ AQTG+GKT+AFG + +++ E+ + Sbjct: 15 ILKAIEDMGFETPSKIQAEVIPIVLQGFDVIGQAQTGTGKTLAFGAPVLNSISNESKKVK 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 ++ +APTRELA+QV +EL + T + GG S+ R+ + L+ G IV+G Sbjct: 75 ------SIILAPTRELAIQVYKELTTVAKYTKFKLLPVYGGDSIDRQIKSLKKGIDIVIG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D I K LN+SH++ +VLDEADEML++GF DDIE IL S + RR L+FSAT+ Sbjct: 129 TPGRVQDLINRKALNLSHIEFLVLDEADEMLNMGFVDDIENILKSCNEDRRTLLFSATMP 188 Query: 191 PAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I K +KDA V IA + S ++ V ++ ++ +L AI+ Sbjct: 189 SEIKKIAKKYMKKDAKHVAIAQNSMTVSSVEQFYYEVKQKNKFESLCKVLSVDEPTRAII 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V + E F + G+++Q R N L ++ +ATDVAARGID Sbjct: 249 FCKTKKGVDELVSSMKEKGFSAEGMHGDMTQSHRLNTLNRFKERTIPFLVATDVAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVV 368 + D VI+ +L + E+ +HR GRTGRA +KG + FV P+ +R+ + + + Sbjct: 309 VKDTSHVINYDLPQDTESYVHRIGRTGRANKKGTAYTFVTPKEFS-SLKRIQKISKSKIN 367 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEKIAAGFLRIH 424 P+++ + + IL D ++ D +V L +K D + A + Sbjct: 368 KRQLPTMDDVLKAKFDSILND--VEQTLSKDNYNTFIPLVKDLESKFDLTNVTAALM--- 422 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 + +EI+ + DD+ + N + L+VG K + + L Sbjct: 423 --SMLYNDEISY--------DYDDDN--------TESNSLDYTRIFLNVGRKDRLNPKIL 464 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLRRTV 525 + L ++ IN+ +G+I + FV+++ D V DL+ + Sbjct: 465 LEFLDNNANINKSQVGSIDILDKFAFVDIATDRVGDLMDNCI 506 >gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088] gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088] Length = 515 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 124/383 (32%), Positives = 206/383 (53%), Gaps = 9/383 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P + +AL + GY + +Q + P L DV+ AQTG+GKT AF L + + + Sbjct: 14 NLPAYLQKALDDVGYEVPSDIQTKTIPPLLEGCDVIGQAQTGTGKTAAFALPILAKIDCR 73 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 + L +APTRELA+QV + YA+ G VA GG + + L+ Sbjct: 74 KKQTQ------CLVLAPTRELAIQVAEAFQS-YARHLPGFQVAPIYGGTDYRTQLKQLER 126 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA ++VGTPGR+ DH+R L + +L +VLDEADEML +GF DD+E+++ P+KR++ Sbjct: 127 GAQVIVGTPGRVMDHMRKGSLKLDNLAHLVLDEADEMLRMGFIDDVEWVMSQLPEKRQIA 186 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI +A +Y +D + + + + I R +++ + + + + IL Sbjct: 187 LFSATMPTAIRRIASDYLQDPQHITVTQKTVTATSIRQRVWMISGASKLDGLTRILEVED 246 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + + L F AL+G+++Q R + ++ GR + +ATDV Sbjct: 247 FDGLIIFARTKIATTELADKLQARGFAAAALNGDMAQSAREQVISQLKKGRLDIVVATDV 306 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ + V++ ++ +PE +HR GRTGRAGRKG ++ QR + R Sbjct: 307 AARGLDVDRITHVVNYDIPQDPEAYVHRIGRTGRAGRKGEAILFAANREQRLLRMIERTT 366 Query: 364 NVSVVWEPAPSVEAIRERDAQRI 386 + P+ + + A++I Sbjct: 367 GQPIELMRLPTASDVADAKAEKI 389 >gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp. C150] gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp. C150] Length = 528 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 127/348 (36%), Positives = 201/348 (57%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL + E Sbjct: 7 NLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+ P++R+ L+F Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI + + KD V I ++ + ++D + V ++ + + ++ + Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEM 348 >gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC 700641] gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC 700641] Length = 524 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 192/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E + AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEE------ATIQAL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ V IA++ +D + V ++ + + ++ + +IVF T+ V Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B] gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B] Length = 474 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 133/344 (38%), Positives = 194/344 (56%), Gaps = 8/344 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL GY +T VQ L L +DV+V A+TGSGKT AF L L +T+ N RF Sbjct: 30 DALDALGYKAMTPVQAQSLPLILSGRDVIVRAKTGSGKTAAFALGLLATI---NPRFFGV 86 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A + PTRELA QVG+E+ L ++ + + + GGV + +R L +GAHIVVGT Sbjct: 87 QA---FVMCPTRELADQVGKEIRRLASRMPNIKLVLLCGGVPLGPQRDSLSHGAHIVVGT 143 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH++ LNI +K +VLDEAD MLD+GF D I+ I+ P R+ L+FSAT Sbjct: 144 PGRIEDHLKRGSLNIESVKTLVLDEADRMLDMGFADAIKQIISGMPGDRQTLLFSATYPQ 203 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++++ Q++ V + + I+ V +R + + ++ NA+VFC Sbjct: 204 DIQRISRSIQRNPASVTVDDVAHNEAVIEQLFYEVNKHERQATLCALFEHYRPANAVVFC 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ L + A+ G+L Q+ER L + + V +ATDVAARG+D+ Sbjct: 264 NTKKQCDEVAVFLRGQGIEARAIHGDLEQRERDQVLLQLTNDSCPVLVATDVAARGLDIK 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 DLE+V++ EL +PE +HR GRTGRAG G + V+P R Sbjct: 324 DLEMVVNYELPRDPEVYVHRIGRTGRAGAVGKACSIVVPAESPR 367 >gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC 49124] gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC 49124] Length = 528 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 127/348 (36%), Positives = 201/348 (57%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL + E Sbjct: 7 NLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+ P++R+ L+F Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI + + KD V I ++ + ++D + V ++ + + ++ + Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEM 348 >gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653] gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653] Length = 482 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|73540602|ref|YP_295122.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] Length = 537 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 133/345 (38%), Positives = 197/345 (57%), Gaps = 8/345 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69 I ALSE+GY T +Q + L KDV+ +AQTG+GKT F L + LL + Sbjct: 65 ILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPMASASA 124 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + V GGV ++ + L+ G I+ Sbjct: 125 SPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEIL 184 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF D++ I++ P +R+ L+FSAT Sbjct: 185 VATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFSAT 244 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG----A 244 SP I LA +Y K V + +A N + ++ V + A+V++LR + Sbjct: 245 FSPEIKRLAASYLKQPVTIEVARSNSTNENVRQMVYQVEDGQKQAAVVHLLRQRAEQGLS 304 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K IVF +++ SR + L A+ G+ +Q ER L+ ++G +ATDVA Sbjct: 305 KQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKNGTIDALVATDVA 364 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFV 347 ARG+D+ D+ VI+ +L + E+ +HR GRTGRAG G +S+FV Sbjct: 365 ARGLDIADMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFV 409 >gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2] gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2] Length = 506 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 150/443 (33%), Positives = 240/443 (54%), Gaps = 18/443 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + +++ G+ T +QE + + KD++ AQTG+GKT AFG+ L + + Sbjct: 8 NISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKIDTK 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L IAPTRELA+QV EL L V + GG + R+ R L+N Sbjct: 68 DGNVQ------GLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALKNRP 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGRL DHI + L + ++ ++LDEADEML++GF +DI+ I+ S P R+ L+F Sbjct: 122 QIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI +A+ + K V I S+ +I+ V ++ + + +L + Sbjct: 182 SATMPDAIRRIAEKFMKTPEIVKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNVQQPE 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AIVF T+ V K L + + G+LSQ +R + L+ + G+ + +ATDVAA Sbjct: 242 LAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFRE 362 RG+D+ + V + ++ +PE+ +HR GRTGRAG+KG++V FV P+ M + ER ++ Sbjct: 302 RGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIVERTTKK 361 Query: 363 ANVSVVWEPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 ++V P + EA+ ++R A L + +++ GD + +L KHD + A Sbjct: 362 KMEALV--PPTANEAVLGQKRVAMEQLLEMTEKNNL-GDYRDFATQMLEKHDAVDLIAAA 418 Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443 L+ PE+I PVS+ R Sbjct: 419 LKTMTK---EPEDI-PVSISEER 437 >gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL S4-120] gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99] gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes FSL F2-208] gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL S4-120] Length = 518 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 147/441 (33%), Positives = 236/441 (53%), Gaps = 24/441 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 15 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 75 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + H++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 129 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN----- 364 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M R+ E Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYL--RIVEETTKKRMQ 366 Query: 365 --VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA L+ Sbjct: 367 PLQAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAAMLK 422 Query: 423 IHRAGLCAPEEITPVSLVSGR 443 + L + TPV + R Sbjct: 423 M----LAKEPDKTPVHITEER 439 >gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b str. F2365] gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b H7858] gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064] gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175] gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503] gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194] gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262] gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017] gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b str. F2365] gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b H7858] gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503] gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262] gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194] gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017] gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A] Length = 519 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 147/441 (33%), Positives = 236/441 (53%), Gaps = 24/441 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 15 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 75 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + H++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 129 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN----- 364 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M R+ E Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYL--RIVEETTKKRMQ 366 Query: 365 --VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA L+ Sbjct: 367 PLQAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAAMLK 422 Query: 423 IHRAGLCAPEEITPVSLVSGR 443 + L + TPV + R Sbjct: 423 M----LAKEPDKTPVHITEER 439 >gi|22126413|ref|NP_669836.1| ATP-dependent RNA helicase DbpA [Yersinia pestis KIM 10] gi|45441434|ref|NP_992973.1| ATP-dependent RNA helicase DbpA [Yersinia pestis biovar Microtus str. 91001] gi|108807144|ref|YP_651060.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Antiqua] gi|108812508|ref|YP_648275.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Nepal516] gi|145598635|ref|YP_001162711.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Pestoides F] gi|149366275|ref|ZP_01888310.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125] gi|162421745|ref|YP_001606136.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Angola] gi|165928002|ref|ZP_02223834.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Orientalis str. F1991016] gi|165938672|ref|ZP_02227227.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Orientalis str. IP275] gi|166010820|ref|ZP_02231718.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua str. E1979001] gi|166210580|ref|ZP_02236615.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua str. B42003004] gi|167402150|ref|ZP_02307625.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420322|ref|ZP_02312075.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425805|ref|ZP_02317558.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467438|ref|ZP_02332142.1| ATP-independent RNA helicase DbpA [Yersinia pestis FV-1] gi|218928898|ref|YP_002346773.1| ATP-dependent RNA helicase DbpA [Yersinia pestis CO92] gi|229896216|ref|ZP_04511386.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A] gi|229897150|ref|ZP_04512306.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897877|ref|ZP_04513028.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229902891|ref|ZP_04518008.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|270486675|ref|ZP_06203749.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27] gi|294504053|ref|YP_003568115.1| ATP-dependent RNA helicase [Yersinia pestis Z176003] gi|21959402|gb|AAM86087.1|AE013856_1 ATP-dependent RNA helicase [Yersinia pestis KIM 10] gi|45436295|gb|AAS61850.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str. 91001] gi|108776156|gb|ABG18675.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|108779057|gb|ABG13115.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua] gi|115347509|emb|CAL20417.1| ATP-dependent RNA helicase [Yersinia pestis CO92] gi|145210331|gb|ABP39738.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F] gi|149292688|gb|EDM42762.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125] gi|162354560|gb|ABX88508.1| ATP-independent RNA helicase DbpA [Yersinia pestis Angola] gi|165913286|gb|EDR31908.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Orientalis str. IP275] gi|165920059|gb|EDR37360.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Orientalis str. F1991016] gi|165990164|gb|EDR42465.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua str. E1979001] gi|166207760|gb|EDR52240.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua str. B42003004] gi|166962017|gb|EDR58038.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048425|gb|EDR59833.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055204|gb|EDR65001.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680338|gb|EEO76437.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516] gi|229688918|gb|EEO80983.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229693487|gb|EEO83536.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701139|gb|EEO89168.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A] gi|262361760|gb|ACY58481.1| ATP-dependent RNA helicase [Yersinia pestis D106004] gi|262366103|gb|ACY62660.1| ATP-dependent RNA helicase [Yersinia pestis D182038] gi|270335179|gb|EFA45956.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27] gi|294354512|gb|ADE64853.1| ATP-dependent RNA helicase [Yersinia pestis Z176003] gi|320015493|gb|ADV99064.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 460 Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 136/365 (37%), Positives = 204/365 (55%), Gaps = 14/365 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A+L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 19 LNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSATYPS 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ + V + + + + I+ R ++++L ++ + +VFC Sbjct: 191 GIEQISARVQRQPLNVEVGDTDEEPA-IEQVFFETTREKRLPLLISVLSHYQPASCVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DLELVI+ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 310 DLELVINFELAFDPEIHIHRIGRTGRAGMSGLAVSLCTPQEMV-RAHTIEDYLQIKLKWT 368 Query: 371 PAPSV 375 PA V Sbjct: 369 PAEQV 373 >gi|119469633|ref|ZP_01612502.1| ATP-dependent RNA helicase, specific for 23S rRNA [Alteromonadales bacterium TW-7] gi|119446880|gb|EAW28151.1| ATP-dependent RNA helicase, specific for 23S rRNA [Alteromonadales bacterium TW-7] Length = 466 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 205/369 (55%), Gaps = 7/369 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + + LS GY ++T VQ L P L KD++ A+TGSGKT AF L + + L + Sbjct: 15 LPAGLVDNLSTLGYAHMTPVQAQSLPPVLEGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 74 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 R +L + PTRELA QV E+ L + + GGVS+ + L++GA Sbjct: 75 FRIQ------SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 128 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DHIR L + ++ +VLDEAD+MLD+GF+D ++ I++ P+ R+ L+F Sbjct: 129 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIPQNRQTLLF 188 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT AI +AK + + + E + + Y + R + +L + Sbjct: 189 SATFPRAIEAIAKRVLSNPEMIKVEEEQEKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VFC+T+ + LA+ F VAL G+L Q++R L + A + +ATDVAA Sbjct: 249 SCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASILVATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ D+++VI+ L+ +P+ +HR GRTGRAG+KG++ + Q + ++ Sbjct: 309 RGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSIYGDAEQFKVAQIGDHYER 368 Query: 366 SVVWEPAPS 374 EP PS Sbjct: 369 DFEPEPMPS 377 >gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni ACN14a] gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni ACN14a] Length = 608 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 163/523 (31%), Positives = 258/523 (49%), Gaps = 28/523 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 +L+ GY T +Q + P + +D+L A TG+GKT AF L L L D + Sbjct: 71 SLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKTAAFALPLLHRL---TDDRTGDH 127 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV + G V GG + R+ R L G +VV TPG Sbjct: 128 GPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIGRQVRALVQGVDVVVATPG 187 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R DH+ L + L VVLDEADEMLD+GF +DI+ IL+ +P+KR+ ++FSAT+ P + Sbjct: 188 RALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVLFSATLPPRM 247 Query: 194 TTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +A+ + +D VR+ I A E + + +V + + A+ IL ++AIVF Sbjct: 248 DQIARRHLRDPVRIQIGRAAPEPGAAPLVRQVSYVVPRAYKTAALGRILDVESPRSAIVF 307 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TR V + L ++ +L G +SQ++R ++ +R A + +ATDVAARG+D Sbjct: 308 CRTREEVDQLADSLNGRGYRAESLHGGMSQEQRERVMERLRTATADLLVATDVAARGLDF 367 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L V++ + S P++ +HR GR GRAGR+G+++ + R + + R + E Sbjct: 368 EQLTHVVNYSVPSAPDSYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTRQRIAVE 427 Query: 371 PAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427 P+V + R + LQ+ L D ++ + +V+ L + DP +IA +++ Sbjct: 428 KVPTVADLHARRLELTRAALQESLLEDDLE-RFRVVVETLTDEFDPMEIALAAVKLAHDA 486 Query: 428 LCAPE------EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---GSSWFSLSVGSKQK 478 P ++ P + G RD G G R+ L VG+ + Sbjct: 487 SFVPNDADDIPDLPPATDARGERTGRD-------GAGRRERRPRPASGGMARLFVGAGRG 539 Query: 479 AEARW--LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 A R L+ + + ++ + IGAI + + VEV D Sbjct: 540 AGVRPQDLVGAITGETRLSGRDIGAIEIAQRFSLVEVPDGAAD 582 >gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B] gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141] gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B] Length = 524 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL + E AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348 >gi|319441074|ref|ZP_07990230.1| ATP-dependent RNA helicase [Corynebacterium variabile DSM 44702] Length = 732 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 167/544 (30%), Positives = 267/544 (49%), Gaps = 54/544 (9%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I A+ + GYV + +Q A + + DV+ AQTG+GKT AF L S L Sbjct: 76 LPDRILAAVEKVGYVTPSPIQAATIPALMDGHDVVGLAQTGTGKTAAFALPALSRL---- 131 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 + P L +APTRELA+Q E + G V + I GG + L+ GA Sbjct: 132 --DTTERHPQVLVLAPTRELALQSADAFESFASHIGGVSILPIYGGAPYGAQLSGLRRGA 189 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGR+ DH+ L++SHL+ +VLDEADEML++GF++D+E IL +P R++ +F Sbjct: 190 QVIVGTPGRIIDHLEKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILADTPDSRQVALF 249 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI L+K Y D + SE R +I ++V+ ++ +A+ IL Sbjct: 250 SATMPSAIRRLSKQYLNDPQEYTVKSEQRTGDNITQDYLMVSHRNKLDALTRILEVTEFD 309 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T++ L F+ A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 310 AMIIFVRTKSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAA 369 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ + V + ++ + E+ +HR GRTGRAGR G ++ FV P R RL + Sbjct: 370 RGLDVDRITHVFNYDIPRDTESYVHRIGRTGRAGRTGRAILFVTP-----RERRLLKNIE 424 Query: 365 VSVVWEPA----PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKH------ 411 + P P V+ + E ++ F + + K VD+ L+ ++ Sbjct: 425 RATKSHPNEIQLPGVDEVNE-----ARKNKFFTSITEARKGKQVDIFRELVTEYAEANDV 479 Query: 412 DPEKIAAGFLRIHRAGLCAPEE--ITPVSLVSGRD-RFRDDSRAFKVGGG---------S 459 P IAA A L E + + R+ R RDD + G + Sbjct: 480 TPTDIAAALA----AKLQGREAFYVQEIQEPQRRERRTRDDWDRGEQDSGVHRPFSERFN 535 Query: 460 RD-------NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512 RD N K + + +SVG +Q+ ++ L G+N + G I + + + VE Sbjct: 536 RDAPKVTDRNGKELAVYRVSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVE 595 Query: 513 VSAD 516 + AD Sbjct: 596 LPAD 599 >gi|254719036|ref|ZP_05180847.1| ATP-dependent RNA helicase DDX17 [Brucella sp. 83/13] gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] Length = 482 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS] gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS] Length = 470 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 130/337 (38%), Positives = 196/337 (58%), Gaps = 2/337 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69 I +AL + GY + T +Q + L KDV+ +AQTG+GKT + L L S L N Sbjct: 26 ILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQSLLYYANASM 85 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + AV GGV + + L+ GA I+ Sbjct: 86 SPARHPVRALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQTGILRAGAEIL 145 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DHI+ K +N+ +VLDEAD MLD+GF D++ I++ PKKR+ L+FSAT Sbjct: 146 IATPGRLLDHIQQKNVNLGQTGILVLDEADRMLDMGFLPDLQRIVNLLPKKRQNLLFSAT 205 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA ++ V V +A +N ++ + +D+++A+ +LR H + + Sbjct: 206 FSSEIRKLANSFLDRPVSVEVARQNATADNVTQTVYRIDEADKNDAVEYLLRLHKREQVL 265 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +T+A SR + L + + A+ G+ +Q ER AL ++G V +ATDVAARG+ Sbjct: 266 IFSNTKAGASRLARQLEKKGLKAAAIHGDKTQAERMAALDAFKEGNITVLVATDVAARGL 325 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L VI+ +L E+ +HR GRTGRAG G ++ Sbjct: 326 HIEELPCVINFDLPFVAEDYVHRIGRTGRAGASGEAI 362 >gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC0288-04] gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC3059-06] gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CGSP14] gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669] gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus pneumoniae JJA] gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CGSP14] gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC0288-04] gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Streptococcus pneumoniae CDC3059-06] gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC 700669] gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus pneumoniae JJA] Length = 524 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 133/335 (39%), Positives = 194/335 (57%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +QE + L KDV+ AQTG+GKT AFGL TL E R A+ AL Sbjct: 20 GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGL---PTL--EKIRIEEATIQ-AL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELAVQ EL GV V GG S+ ++ + L++GAHIVVGTPGRL D Sbjct: 74 VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ K L + ++ ++LDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI + Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K V IA++ +D + V ++ + + ++ + AIVF T+ V Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L F+ + G+L Q +R L+ ++G V +ATDVAARG+D+ + V + Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348 >gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str. 16M] gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457] gi|254689182|ref|ZP_05152436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 6 str. 870] gi|256044606|ref|ZP_05447510.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113486|ref|ZP_05454320.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella melitensis bv. 3 str. Ether] gi|256257432|ref|ZP_05462968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 9 str. C68] gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9] gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M] gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 9 str. C68] gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196] gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str. 16M] gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457] gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M] gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 9 str. C68] gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9] gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196] gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28] gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90] Length = 482 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330] gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365] gi|254701699|ref|ZP_05163527.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella suis bv. 5 str. 513] gi|254704242|ref|ZP_05166070.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella suis bv. 3 str. 686] gi|256061039|ref|ZP_05451195.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella neotomae 5K33] gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti CCM 4915] gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40] gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026] gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis 1330] gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365] gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti CCM 4915] gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40] gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026] Length = 482 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818] Length = 711 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 148/399 (37%), Positives = 221/399 (55%), Gaps = 27/399 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + GY L +Q + + D+ A+TG GKT++F L + LLA D + Sbjct: 131 LEKHGYKYLFPIQAKTFDLIMAGNDIFGKARTGEGKTLSFALPVIEKLLASPDT-TRGRR 189 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCI-GGVSVHRERRDLQNGAHIVVGTP 132 P L +APTRELA QV RE + K G +A CI GG +RR +NG +VVGTP Sbjct: 190 PRVLVMAPTRELASQVWRE----FQKVGPSLASTCIYGGTDYEPQRRAFRNGLDVVVGTP 245 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL----DSSPKKRRMLMFSAT 188 GRL DH+ L +++L+ +VLDEAD ML++GF D +E +L + + +K +M++FSAT Sbjct: 246 GRLMDHMESGALQLTNLQYLVLDEADRMLEVGFVDTVEKMLSMAVEQAGQKPQMILFSAT 305 Query: 189 ISPAI-TTLAKNYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + P I +TL K + V + E NR + + + A+ R+ I ++++ Y GA Sbjct: 306 MPPFIKSTLTKYMPEHKVVDTVGKEMNRTSTGVQHLALRCPWQARNTVIADVVQVYSGAH 365 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F T+ + L + L Q V L G+++Q++R +LQ RDG+ R +ATDV Sbjct: 366 GRTMIFTQTKRDANEL--ALNDTLKQEVQVLHGDIAQKQRELSLQCFRDGKVRCLVATDV 423 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P+++LV+ E + E+ +HRSGRTGRAGRKG + N +++ + R A Sbjct: 424 AARGIDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRKGTCICFYKPNQEQQLREVERRA 483 Query: 364 NVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGD 399 +S AP I RDA R FLDS+ D Sbjct: 484 GISFTRIGAPQPADIIKASARDATR------FLDSVTND 516 >gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM 7299] Length = 488 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 127/376 (33%), Positives = 214/376 (56%), Gaps = 9/376 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N + + A+ + G+ + +Q+ + L KD++ AQTG+GKT AFGL + + + Sbjct: 7 NFKENLQRAIEDAGFKEPSPIQQDAIPVVLSGKDMVGQAQTGTGKTAAFGLPMINMM--- 63 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + S A+ I PTRELA+QV EL +G+ A GG S + + R++ + A Sbjct: 64 ----NGNSGVEAVVIVPTRELAMQVSDELFRFGKSSGMNTATVYGGQSYNMQLRNI-DRA 118 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D ++GK ++I VVLDEADEMLD+GF DDI+ I PK+R+ L+F Sbjct: 119 SIIVATPGRLIDLLKGKKIDIKP-SFVVLDEADEMLDMGFLDDIKEIFTYLPKERQTLLF 177 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ PAI LA+N K+ + + +S I +V +RD+A++ + + + Sbjct: 178 SATMPPAIKKLAQNILKEPEFITVTKAEMTNSKITQLFYVVDEYERDDALIRLFDFKNPE 237 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +I+FC T+ V R + L L G++ Q++R ++ + G V IATDVAA Sbjct: 238 KSIIFCRTKKEVDRLSTYLVSQGHMAKGLHGDMEQRQREEVIRSFKKGALDVLIATDVAA 297 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ D+ V + L + E+ +HR GRTGRAG++G+++ ++ + R +++ Sbjct: 298 RGLDVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHEFRMIQKIQHVTGG 357 Query: 366 SVVWEPAPSVEAIRER 381 + + P++++++E+ Sbjct: 358 KMEAKVIPNIDSVKEK 373 >gi|254706857|ref|ZP_05168685.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M163/99/10] gi|254710035|ref|ZP_05171846.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis B2/94] gi|254714037|ref|ZP_05175848.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M644/93/1] gi|254716905|ref|ZP_05178716.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M13/05/1] gi|256031530|ref|ZP_05445144.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M292/94/1] gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis B2/94] gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M292/94/1] gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis B2/94] gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 482 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840] gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis ATCC 25840] Length = 482 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV----VVAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGIDHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|209808970|ref|YP_002264508.1| ATP-dependent RNA helicase DbpA [Aliivibrio salmonicida LFI1238] gi|208010532|emb|CAQ80900.1| ATP-independent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] Length = 462 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 7/377 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + L GY +T +Q L L KDV+ +TGSGKT AFGL L + L + Sbjct: 10 NLNPYLLQNLDTLGYTEMTPIQAQSLPFMLEGKDVIAQGKTGSGKTAAFGLGLLANL--D 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124 RF S L + PTRELA QV E+ L + + V GGV + L++G Sbjct: 68 VKRFRVQS----LVLCPTRELADQVAVEIRKLARSIHNIKVLTLCGGVPFGPQIGSLEHG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHI+VGTPGR+ +H+R LN+ +L VLDEAD ML++GF+D I+ +LD +P KR+ L+ Sbjct: 124 AHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDLVLDHAPAKRQNLL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT P I ++A + + + + S + + DR A+ +L H Sbjct: 184 FSATFPPQIKSIADRIMNNPIMTKAEDKIEETSITQHFYKVDDFEDRLKALQILLLKHRP 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++ ++FC+T+ L F V AL G+L Q++R AL + + +ATDVA Sbjct: 244 ESTVIFCNTKRVTQEVADELRHFDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ L+ VI+ ELS +PE +HR GRTGRAG+KG+++ + ++ + Sbjct: 304 ARGLDIDSLDAVINFELSRDPEVHVHRIGRTGRAGKKGIALSLFNNKETNSFAQIEDYMS 363 Query: 365 VSVVWEPAPSVEAIRER 381 +++ EP PS + + E+ Sbjct: 364 LTLNDEPLPSEDHLSEQ 380 >gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9] gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus LMD-9] Length = 527 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 201/348 (57%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL + E Sbjct: 7 NLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+ P+KR+ L+F Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEKRQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI + + KD V I ++ + ++D + V ++ + + ++ + Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L + + G+L Q +R ++ ++G+ + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348 >gi|62289879|ref|YP_221672.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str. 9-941] gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308] gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus S19] gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A] gi|254697319|ref|ZP_05159147.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730216|ref|ZP_05188794.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 4 str. 292] gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038] gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus bv. 1 str. 9-941] gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus S19] gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A] gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038] gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] Length = 482 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445] gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445] Length = 482 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231] Length = 650 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 218/391 (55%), Gaps = 13/391 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I +A+++ G+ + +Q + + DV+ AQTG+GKT AF L + S + + Sbjct: 73 LPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRINVKK 132 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 133 ------RHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGA 186 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH+ L+IS+L +VLDEADEML +GF++DIE IL+ +P +++ +F Sbjct: 187 QIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVALF 246 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L+K Y KD + + SE R +++I R + VA ++ +A+ IL + Sbjct: 247 SATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFE 306 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 307 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V + ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396 ++ P+V+ + E ++ F DSI Sbjct: 427 ELIEMDLPTVDEVNESRKEK------FADSI 451 >gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium pseudotuberculosis FRC41] gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium pseudotuberculosis FRC41] gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002] gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19] Length = 660 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 218/391 (55%), Gaps = 13/391 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I +A+++ G+ + +Q + + DV+ AQTG+GKT AF L + S + + Sbjct: 73 LPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRINVKK 132 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 133 ------RHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGA 186 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH+ L+IS+L +VLDEADEML +GF++DIE IL+ +P +++ +F Sbjct: 187 QIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVALF 246 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L+K Y KD + + SE R +++I R + VA ++ +A+ IL + Sbjct: 247 SATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFE 306 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 307 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V + ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396 ++ P+V+ + E ++ F DSI Sbjct: 427 ELIEMDLPTVDEVNESRKEK------FADSI 451 >gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo] gi|256159665|ref|ZP_05457418.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella ceti M490/95/1] gi|256254934|ref|ZP_05460470.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella ceti B1/94] gi|260168662|ref|ZP_05755473.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella sp. F5/99] gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti B1/94] gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99] gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M490/95/1] gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo] gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti B1/94] gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99] gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M490/95/1] Length = 435 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|88603077|ref|YP_503255.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei JF-1] gi|88188539|gb|ABD41536.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei JF-1] Length = 531 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 161/518 (31%), Positives = 257/518 (49%), Gaps = 46/518 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ + GY T +Q+ ++ L DV A TG+GKT AFG+ N Sbjct: 15 IIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIELCQPANRNVQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + + P+RELAVQVG EL L K G+ + GG + R+ + L G I++ Sbjct: 75 ------TIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSRGVQIII 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DHI+ K L + + VVLDEAD+MLD+GFR+DIE IL PK+R+ ++ SAT Sbjct: 129 GTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVILSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I +++ +QK+ + V + + I+ + V + + ++ +L ++ + I+ Sbjct: 189 PPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKADTLIRVLEFYQPQRTII 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ +V + L F L G ++Q +R + R G+ + IATDVAARGID Sbjct: 249 FCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATDVAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + +++LV + + + E +HR GRT RAGR G ++ FV P+ R R+ S Sbjct: 309 VEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYR-----LRDVRRSTR 363 Query: 369 WEPAP-SVEAIRERDAQRILQDPLFLDSIQ--GDE---KKMVDVLLAK-HDPEKIAAGFL 421 EP P + +RE ++ D++ GD + M++ LA+ DP +A L Sbjct: 364 AEPEPLPIPTLREIGGKKATTTLADADALMKTGDLTFCRPMIEEKLAEGADPVALATSLL 423 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481 I AG+ +E DD + + LS G + Sbjct: 424 MIA-AGIATEKE--------------DDLEKY---------LGEQAVVRLSAGRQDGILV 459 Query: 482 RWLMPMLCRSSGINRQS-IGAIRVQPDLTFVEVSADGV 518 R ++ + R+SG N Q+ IG IR+ T+++V V Sbjct: 460 RDIL-QIVRNSGRNIQNDIGNIRIGQTATYIDVPEQSV 496 >gi|320093766|ref|ZP_08025614.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979303|gb|EFW10798.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str. F0338] Length = 800 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 168/549 (30%), Positives = 271/549 (49%), Gaps = 45/549 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +A+++ G+V T +Q + P L +DV+ AQTG+GKT AFGL L + + A+ Sbjct: 56 GLPDELLQAVTDMGFVTPTPIQAEAIPPLLDLRDVVGIAQTGTGKTAAFGLPLLAIVDAD 115 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 A AL +APTRELA+Q +E A+T +V V + GG + L+ G Sbjct: 116 E------KAVQALVLAPTRELAMQSAAAIEDFAARTAELVVVPVYGGSPYGPQIGALKRG 169 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D I L++S ++ +VLDEADEML +GF +D+E I S+P R + Sbjct: 170 AQVVVGTPGRVIDLIEKGALDLSGVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTAL 229 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243 FSAT+ PAI +A+ + KD V+V ++ E+ I +V + A+ +L Sbjct: 230 FSATMPPAIEKVAREHLKDPVKVAVSEESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQ 289 Query: 244 --------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 A AIVF TR V + L+ F+ +SG+++Q ER ++ ++ G Sbjct: 290 HIAAGQEDADAAIVFVRTRVDVEEVSLELSGRGFRAAGISGDVAQTERERMVERLKSGSL 349 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 V +ATDVAARG+D+ + LV++ ++ PE +HR GRTGRAGR+G S+ R Sbjct: 350 DVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRSLTFFTPREHTR 409 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDP 413 R+ + + PS A+ E A+R+L+ G +++++ + A D Sbjct: 410 LRRIEKLTGTPMEEVAIPSPAAVSEFRARRLLEGVGARVERGRLGMYRELLEQMAASLDV 469 Query: 414 EKIAAGFLRIHRAGLCAPE-----------------------EITPVSLVSGRDR---FR 447 E +AA + G P E S +GRD+ + Sbjct: 470 EDVAAALI-AQAVGDEGPAPRAESDRRGRGRARREEGLDESGEFVGASFEAGRDKDRPLK 528 Query: 448 DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507 + GG R + + + VG K + + ++ + GI+ + IG I + P Sbjct: 529 GGRDGARRRGGGRAVAGPGTRYRVEVGRKDRVKPGSIVGAIAGEGGIDGRDIGHIDIFPT 588 Query: 508 LTFVEVSAD 516 + V+++AD Sbjct: 589 FSLVDITAD 597 >gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459] gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 1816] gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 220] Length = 517 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 147/441 (33%), Positives = 236/441 (53%), Gaps = 24/441 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 13 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 73 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + H++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 127 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN----- 364 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M R+ E Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYL--RIVEETTKKRMQ 364 Query: 365 --VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA L+ Sbjct: 365 PLQAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAAMLK 420 Query: 423 IHRAGLCAPEEITPVSLVSGR 443 + L + TPV + R Sbjct: 421 M----LAKEPDKTPVHITEER 437 >gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262] gi|217965039|ref|YP_002350717.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Listeria monocytogenes HCC23] gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071] gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262] gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Listeria monocytogenes HCC23] gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071] Length = 516 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 147/441 (33%), Positives = 236/441 (53%), Gaps = 24/441 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 13 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 73 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + H++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 127 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN----- 364 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M R+ E Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYL--RIVEETTKKRMQ 364 Query: 365 --VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA L+ Sbjct: 365 PLQAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAAMLK 420 Query: 423 IHRAGLCAPEEITPVSLVSGR 443 + L + TPV + R Sbjct: 421 M----LAKEPDKTPVHITEER 437 >gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088] gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088] Length = 462 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 131/357 (36%), Positives = 203/357 (56%), Gaps = 10/357 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI ++L GY +T VQE + L+ +D++V A+TGSGKT FG+ L + + Sbjct: 10 NISPAQLKSLEALGYKAMTPVQEQSIPLILKGRDLVVRAKTGSGKTATFGIGLLNKI--- 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 N RF A A L + PTRELA QVG E+ L ++ + V + GG +R LQ+G Sbjct: 67 NPRFFGAQA---LVLCPTRELADQVGAEIRRLASQMPNIKVVMLCGGKPFGAQRDSLQHG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AH+VVGTPGR+ DH+ L I + +VLDEAD MLD+GF D ++ I+ PK R+ L+ Sbjct: 124 AHVVVGTPGRIHDHLTKGTLQIDQVSTLVLDEADRMLDMGFADTMQAIIAEVPKNRQTLL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYH 242 FSAT I ++++ Q + V + ++ H + I+ + +R ++ + ++ Sbjct: 184 FSATYPDNIQKISRSIQANPAMVQV-DDDVAHEEGVIEQLFFEIKKHERYPTLLALFEHY 242 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 KNA VFC+T+ + L EH + AL G++ Q+ER L +G V +ATD Sbjct: 243 RPKNAAVFCNTKKQCAEVADFLNEHDIEAKALHGDMDQRERDQVLLQFANGSCPVLVATD 302 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 VAARG+D+ L +V++ EL +PE +HR GRTGRAG G++ ++ ++ R ++ Sbjct: 303 VAARGLDIKSLAMVVNYELPRDPEIYVHRIGRTGRAGETGLAFSLVTESETPRLRQI 359 >gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str. F0310] Length = 699 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 190/624 (30%), Positives = 304/624 (48%), Gaps = 75/624 (12%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P I A+++ G+ T +Q A + P L +DV+ AQTG+GKT AFGL L + + A+ Sbjct: 43 GLPDEILAAITDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDAD 102 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 AL +APTRELA+Q + +E A+ + V + GG + L+ G Sbjct: 103 ERDVQ------ALVLAPTRELAMQSAQAIEDFAARAARLDVVPVYGGSPYGPQIGALKRG 156 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D I L++S+++ +VLDEADEML +GF +D+E I + P +R + Sbjct: 157 AQVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRMGFAEDVETIASAVPAQRLTAL 216 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243 FSAT+ AI +A+ + KD V+V +++E+ I +V + A+ +L Sbjct: 217 FSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALCRVLATRAQ 276 Query: 244 --------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 A AIVF TRA V + L+ F+ +SG+++Q ER ++ ++ G Sbjct: 277 HIARGQEEADAAIVFVRTRADVEEVSLELSARGFRAAGISGDVAQTERERMVERLKTGAL 336 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 V +ATDVAARG+D+ + LV++ ++ PE +HR GRTGRAGR+G ++ F P+ R Sbjct: 337 DVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRALTFFTPREHGR 396 Query: 355 --RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ------DPLFLDSIQG------DE 400 R E+L ++ V P+P+ A+ E A+R+L+ + LD +G E Sbjct: 397 LRRIEKLT-GTDMEEVAIPSPA--AVSEFRARRLLEGIGARIERGRLDMYRGLLAELGQE 453 Query: 401 KKMVDVLLA-------------KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447 + D+ A + + ++ AG +R L E S +GRD+ Sbjct: 454 TSVEDIAAALVASAVGDEGPAPRVEKDRRGAGKVRREER-LDESGEFVGASFEAGRDK-- 510 Query: 448 DDSRAFKVGG-------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIG 500 R K G G R + + + VG K + + ++ + GI+ + IG Sbjct: 511 --DRPIKGGADGARRRAGGRSAPGSGTRYRVEVGKKDRVKPGSIVGAIAGEGGIDGRDIG 568 Query: 501 AIRVQPDLTFVEVSAD--GVDLLRRTVKLDKGIQLKYLGGEKP------DFRGYK----- 547 I + P + V+++AD G L R + G QL+ E P D G+ Sbjct: 569 HIEIYPTFSLVDITADLSGEQLSRISKGYVSGRQLRIRVDEGPGRYPRGDRDGFDRDART 628 Query: 548 ---SSGFKSKNSQDGATKRFKRFK 568 S G + + D KR RF+ Sbjct: 629 RGGSGGQREERPGDRGDKRPHRFE 652 >gi|256028357|ref|ZP_05442191.1| ATP-dependent RNA helicase [Fusobacterium sp. D11] gi|289766283|ref|ZP_06525661.1| ATP-dependent RNA helicase [Fusobacterium sp. D11] gi|289717838|gb|EFD81850.1| ATP-dependent RNA helicase [Fusobacterium sp. D11] Length = 528 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 151/507 (29%), Positives = 251/507 (49%), Gaps = 35/507 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + LS++GY + T +Q + L+ +KD++ AQTG+GKT AF L + + F Sbjct: 21 KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VVGT Sbjct: 74 LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ LK +LDEADEML++GF +DIE IL + + +RML FSAT+ Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRMLFFSATMPE 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249 I +AKN+ K+ + + S R+ + + +++RD A+ I+ I+ Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARGID Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370 Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 E P V+ + + RI+ D + +D+ KK+ LL D E + A L++ + Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENVVASLLKLSYS 430 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 + +S V D G + +++G K + L+ Sbjct: 431 DVLDENNYNEISPVKMEDT-------------------GKARLFIAMGRKDGMTPKKLVE 471 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + + + + I V +FV V Sbjct: 472 FIVKKAKVKQSYIKNAEVYEGFSFVSV 498 >gi|313633504|gb|EFS00323.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL N1-067] gi|313638189|gb|EFS03441.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL S4-171] Length = 470 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 208/382 (54%), Gaps = 20/382 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T VQ+ ++ L KD++ +QTGSGKT AF + +A ++ E ++ Sbjct: 10 IKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWEENK-- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTREL VQV E + + A G +++ +L HIVVG Sbjct: 68 ----PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVG 123 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PKKR+ L FSAT+ Sbjct: 124 TPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFSATMP 183 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ+D V + +A+E + + I + + + +++ + ++L +AI+F Sbjct: 184 DEMQDLIKRYQEDPVVIEMAAE--KTNPITH--IEMQTENKEKTLQDVLITENPDSAIIF 239 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V + +L + G L Q+ER A+ + G++R IATDVA RGID+ Sbjct: 240 CNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGRGIDV 296 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ LVI+ +L EN +HR GRTGRAG G ++ + N + N+++ + Sbjct: 297 ENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDIEDMLNITIEKK 356 Query: 371 PAPSV-------EAIRERDAQR 385 P++ EA R++ +R Sbjct: 357 RKPTIIEVKASEEAFRKKQQKR 378 >gi|153947047|ref|YP_001401319.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP 31758] gi|170024671|ref|YP_001721176.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis YPIII] gi|152958542|gb|ABS46003.1| ATP-independent RNA helicase DbpA [Yersinia pseudotuberculosis IP 31758] gi|169751205|gb|ACA68723.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis YPIII] Length = 460 Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 136/365 (37%), Positives = 204/365 (55%), Gaps = 14/365 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A+L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 19 LNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSATYPS 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ + V + + + + I+ R ++++L ++ + +VFC Sbjct: 191 GIEQISARVQRQPLNVEVGDTDEEPA-IEQVFFETTREKRLPLLISVLSHYQPASCVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DLELVI+ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 310 DLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMV-RAHTIEDYLQIKLKWT 368 Query: 371 PAPSV 375 PA V Sbjct: 369 PAEQV 373 >gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2] gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2] Length = 482 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|115374548|ref|ZP_01461828.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1] gi|310823766|ref|YP_003956124.1| ATP-dependent helicase, dead/deah-box family [Stigmatella aurantiaca DW4/3-1] gi|115368418|gb|EAU67373.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1] gi|309396838|gb|ADO74297.1| ATP-dependent helicase, DEAD/DEAH-box family [Stigmatella aurantiaca DW4/3-1] Length = 812 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 188/335 (56%), Gaps = 11/335 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ERGY + T VQ P + +D++V ++TG+GKT AFGL L + A+ R Sbjct: 43 AIAERGYTHPTPVQAKAFQPAMEGRDLIVRSKTGTGKTAAFGLPLLEKIPADERRVR--- 99 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA+QV EL L GV VA GG S+ ++ L+ G I+VGTPG Sbjct: 100 ---ALILCPTRELALQVADELRALGKYKGVKVAAIYGGASMKQQEDALEEGTPIIVGTPG 156 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L + VLDEADEML+ GF +++ ILD PK R++L+FSAT+ I Sbjct: 157 RVFDHIGRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKNRQVLLFSATVPTDI 216 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVF 250 L Y +A + ++ + I + + +SD + ++ +L NAI+F Sbjct: 217 QNLIARYTTNAETLLLSGDVFTVEHIHH--IRYDVSDAFPKPRNLIYVLEKAEPPNAIIF 274 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR + T VL + F L+G+L Q+ER + ++ G +ATD+AARGID+ Sbjct: 275 CNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVATDIAARGIDI 334 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LE VI+ L +P LHR GRTGR G KG ++ Sbjct: 335 SGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAI 369 >gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01] gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B] gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01] gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B] Length = 643 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 164/515 (31%), Positives = 264/515 (51%), Gaps = 29/515 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L D L AQTG+GKT AF L L + L N R Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKL-DLNQR----- 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAH+VVGTP Sbjct: 74 KPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKSGAHVVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I + L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P Sbjct: 134 GRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + +D V V++A +N + + +V ++D A+ +L +IVF Sbjct: 194 LKKIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQL 373 Query: 370 EPAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 V R E +A++ + LD +K+ L DP +AA L+ Sbjct: 374 PLRDQVAEARLAKLGAELEAEK---EHKALDKFAELVEKLQTSL--DIDPATLAAMLLKR 428 Query: 424 H---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQK 478 R E+ P+ RD+ + + G NF W + L VG +Q Sbjct: 429 QQGKRPLFYIGED--PMVEAIERDK-QRRKERREGGRDGGRNFNNQDWDTYQLQVGREQG 485 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + ++ L G+ + SIGAI++ TFV++ Sbjct: 486 VQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 520 >gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL B-30929] Length = 506 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 127/351 (36%), Positives = 193/351 (54%), Gaps = 9/351 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ G+ T +Q + L+ +DV+ AQTG+GKT AFGL + + +N Sbjct: 15 AINNSGFEEATPIQGETIPMVLKGEDVIGQAQTGTGKTAAFGLPILQKIDFDNPNVQ--- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL I+PTRELA+Q E+ L V V GG + R+ L+ IVVGTPG Sbjct: 72 ---ALIISPTRELAIQTQEEIYRLGKDEKAKVQVVYGGADIRRQINALKGHPQIVVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHIR L + H+K +VLDEADEML++GF DDIE I+ +PK+R+ L+FSAT+ I Sbjct: 129 RILDHIRRHTLKLEHVKTLVLDEADEMLNMGFLDDIEDIIKQTPKERQTLLFSATMPAQI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + +D +V I ++ ID V V ++ + + + IVFC T Sbjct: 189 KRVGVQFMRDPHQVTIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V +K L ++ L G+L+Q R+ +Q + + + +ATDVAARGID+ + Sbjct: 249 KRRVDEVSKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILVATDVAARGIDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFR 361 V + ++ +P+ +HR GRTGRAG+ G+S+ F P M R E+L + Sbjct: 309 THVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDYLREIEKLTK 359 >gi|323700588|ref|ZP_08112500.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132] gi|323460520|gb|EGB16385.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans ND132] Length = 551 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 169/552 (30%), Positives = 269/552 (48%), Gaps = 44/552 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +AL+ +G+ T +Q A+ P L +D++ AQTG+GKT AFGL + R Sbjct: 15 DALTSKGFTAPTPIQ-ALTIPRLLSGTRDIVGQAQTGTGKTAAFGLPVIEAAEEGARRVQ 73 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +L +APTRELA+QV E++ L + V GG ++H + + L+ G +VVG Sbjct: 74 ------SLILAPTRELAIQVAEEIDSLKGGKRIRVLPVYGGQAIHMQLKALRQGVDVVVG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ L I L +LDEADEM ++GF DD+ IL S+ RR LMFSAT+ Sbjct: 128 TPGRIMDHLERGSLRIDQLTYFILDEADEMCNMGFVDDVRAILASANADRRTLMFSATMG 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVL--VALSDRDNAIVNILRYHGAKNA 247 + +A+ + D V + E SD R V +A SDR A+ ++ Sbjct: 188 GEVMAIAREFMGDFDVVRVKPEV---SDAPLTRQVFHEIADSDRFEALCRVIDARPDFYG 244 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF TRA L + + + G+L+Q +R L R+ +A + +ATDVAARG Sbjct: 245 LVFVRTRADADLVAARLTQRGYPAEPIHGDLNQAQREKILSGFRERKATILVATDVAARG 304 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 ID+PDL V++ L +P+ +HR+GRTGRAG++G+++ +I N R+ + + + + Sbjct: 305 IDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKQGVAITLITPNEFRKLMYIAKSTGIDI 364 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSI-----QGDEKKMVDVLLAKHDPEKIAAGFLR 422 EP P +E + ++++ + L++I G M LL E++ A LR Sbjct: 365 AKEPLPRIEDVIHSKKRKVVDE---LNAILEAEGHGAYLAMAGELLHDRPAEEVVAALLR 421 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 EE+ + SG R VG R G + + ++G + Sbjct: 422 S-----AFGEEL----VESGYRRIE------PVGPAGR----GRADMTCALGRAHGMNPK 462 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL--KYLGGEK 540 + + ++ + + +I +RVQ D T V A D + V +G L + K Sbjct: 463 RFVDFIASAANVKQWAIQHVRVQNDRTTFTVPAAEADRVMERVNSREGETLVTRDESRRK 522 Query: 541 PDFRGYKSSGFK 552 P R + G+K Sbjct: 523 PPGRKFPQKGWK 534 >gi|330819324|ref|YP_004348186.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3] gi|327371319|gb|AEA62674.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3] Length = 465 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 199/362 (54%), Gaps = 8/362 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + GY +T +Q A L L +D++ A+TGSGKT AF LAL S L A RF Sbjct: 23 LEQLGYTEMTPIQAASLPLALAGQDLIAQAKTGSGKTAAFSLALLSRLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ + V GG + + L++GAHIVVGTPG Sbjct: 79 --AMILCPTRELADQVAQEIRRLARAEENIKVLTLCGGTPMRPQAASLEHGAHIVVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P +R L+FSAT I Sbjct: 137 RIMDHLERGTLALGALNTLVLDEADRMLDMGFFDDIATVARQCPTERLTLLFSATYPEGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 T L++ + +D + +A E I R V +R +A+ +L ++ + I FC+T Sbjct: 197 TKLSRQFLRDPKEIKLA-EQHDARKIRQRFYEVTEDERLHAVGQLLNHYRPASTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL+ F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLSAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA ++G ++ + N R + + V W+P Sbjct: 316 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGIEQAQGREVEWQPLA 375 Query: 374 SV 375 S+ Sbjct: 376 SL 377 >gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp. damselae CIP 102761] gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp. damselae CIP 102761] Length = 647 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 202/352 (57%), Gaps = 10/352 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + G+V T +Q A + L D L AQTG+GKT AF L L + L + Sbjct: 20 ALDKMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPLLNKLKLSQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEVKTLGQNIQGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ + VLDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPI 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + ++ R+++A ENR + +D + +V ++D A++ +L +IVF Sbjct: 194 VKEIVDRFLRNPARIDVAGENRTVAKVDQQFWVVKGVEKDEAMMRLLETEDTDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R ++ ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361 + V + ++ + E+ +HR GRTGRAGR+G ++ ++ N M R ER+ + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTIERVTK 365 >gi|307941464|ref|ZP_07656819.1| dead/deah box helicase domain-containing protein [Roseibium sp. TrichSKD4] gi|307775072|gb|EFO34278.1| dead/deah box helicase domain-containing protein [Roseibium sp. TrichSKD4] Length = 409 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 113/259 (43%), Positives = 168/259 (64%), Gaps = 6/259 (2%) Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331 ++LSGELSQ++RS AL M+ G ARVC+ATDVAARGIDLP+L+LVIHA+L + LLHR Sbjct: 1 MSLSGELSQEQRSAALTAMKTGAARVCVATDVAARGIDLPNLDLVIHADLPTGKAALLHR 60 Query: 332 SGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391 SGRTGRAGRKG SV ++P +R AE + A V V W+ AP+ + IR +D +R+ + P+ Sbjct: 61 SGRTGRAGRKGTSVLMVPFPRRRAAEHTLKFAGVKVTWKGAPTADDIRAKDKERLFEAPV 120 Query: 392 FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSL--VSGRDRFRDD 449 + ++ + L+ KHDPEK+AA F++++++ L APEE++ S + GRD Sbjct: 121 LNTEFEPEDLAIARELMEKHDPEKLAAAFVKLYQSRLPAPEEVSEASEENIHGRDSGSRG 180 Query: 450 SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509 R ++ R F WF LS+G K +A+ RWL+PM+CR+ + ++ +GAI++ T Sbjct: 181 GRVAEI----RGKFDEGVWFRLSLGHKHRADPRWLLPMICRAGHVTKKEVGAIKIFQTET 236 Query: 510 FVEVSADGVDLLRRTVKLD 528 E+S + + T+K D Sbjct: 237 RFEISGEHAERYAATLKRD 255 >gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius DSM 11571] Length = 536 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 157/522 (30%), Positives = 270/522 (51%), Gaps = 47/522 (9%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I A+ + G+ T +Q+ + L +DV AQTG+GKT AF + L + E Sbjct: 11 NISPEILRAIEDMGFEEPTPIQQRSIPLILSGRDVTGQAQTGTGKTAAFAIPLIEKI--E 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 ++ S S + ++PTREL +Q+ E L Y K V+ V GG ++ R+ +L+ Sbjct: 69 PEKCSVQS----IVLSPTRELTIQISEEFNRLLKYRKDIRVLPVY-GGQAIERQLHELKK 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HI++GTPGR+ DH++ L++S +K VVLDEAD+ML++GFR+D+E IL +P +R+ + Sbjct: 124 GVHIIIGTPGRVMDHMKRGTLSLSGIKTVVLDEADQMLEMGFREDMEEILSKAPGERQTI 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I ++K++QK V I I+ + + V D+ + ++ + Sbjct: 184 LFSATMPKPILKISKSFQKKPEFVTINPGQLTVPLIEQKYLEVREKDKLEVLCRLIDINS 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +++FC+T+ +V +++L + L G++ QQ+R + R G + IATDV Sbjct: 244 SDLSMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDILIATDV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFRE 362 AARGID+ D+++V + ++ + E +HR GRTGRAG+ GMS FV P+ + + R+ ++ Sbjct: 304 AARGIDIDDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMSYTFVSPKEIYKL--RMIKK 361 Query: 363 -ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAK-HDPEK 415 A V++V P+ + +++L + SI +E V+ L+ + + + Sbjct: 362 IAKVNIVRIAIPNAADVENSRIEKVLDR---VKSIINEEDIGLYIPAVERLMEEDYTLSE 418 Query: 416 IAAGFLRIH---RAGLCAP-EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471 I+A L+I +G P EE P G G F + Sbjct: 419 ISAALLKIQLEGSSGKVQPGEEFEP---------------------GDTGAEPGMVRFFV 457 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 ++G + + + + I IGAI + D +FVE+ Sbjct: 458 NIGKNKGVRPSDFVGAIAGEAEIPGNEIGAINIMKDFSFVEI 499 >gi|238020287|ref|ZP_04600713.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147] gi|237867267|gb|EEP68273.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147] Length = 468 Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 201/349 (57%), Gaps = 2/349 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69 I AL+E+ Y T +Q A + L D+L +AQTG+GKT AF L +L N Sbjct: 13 ICTALAEQNYQTPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYANASA 72 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ L + PTRELA Q+ + + + V GGV+++++ +L+ G IV Sbjct: 73 SPAMHPVRMLVLTPTRELADQIDQNTQNYIKNMPLRHTVLFGGVNMNKQTAELRAGCEIV 132 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + T GRL DH++ K +N+S ++ VVLDEAD MLD+GF DDI I+ PK R+ L+FSAT Sbjct: 133 IATVGRLLDHVKQKNINLSKVEIVVLDEADRMLDMGFIDDIRTIMQMLPKPRQTLLFSAT 192 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 +PAI LA+++ V +A++N +++++ + + + + ++ I Sbjct: 193 FAPAIRKLAQDFMNAPQIVEVAAQNTTNANVEEHVISIDSHRKRELLERLIVDLNMNQVI 252 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ S + ++ L A+ G+ SQQ R + L + G RV +ATDVAARG+ Sbjct: 253 VFCKTKQSADQVSRDLVRRGLSANAIHGDKSQQTRLDVLNQFKSGELRVLVATDVAARGL 312 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 D+ +L V++ E+ + E+ +HR GRTGRAG G+++ ++ + Q+ E Sbjct: 313 DIAELPFVVNYEMPTQAEDYVHRIGRTGRAGADGVAISLMDETEQKMYE 361 >gi|237743040|ref|ZP_04573521.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1] gi|229433600|gb|EEO43812.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1] Length = 528 Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 152/507 (29%), Positives = 251/507 (49%), Gaps = 35/507 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + LS++GY + T +Q + L+ +KD++ AQTG+GKT AF L + + F Sbjct: 21 KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VVGT Sbjct: 74 LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ LK +LDEADEML++GF +DIE IL + + +RML FSAT+ Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRMLFFSATMPD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249 I +AKN+ K+ + + S R+ + + +++RD A+ I+ I+ Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARGID Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370 Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 E P V+ + + RI+ D + +D+ KK+ LL D E I A L++ + Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 + +S V D G + +++G K + L+ Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKARLFIAMGRKDGMTPKKLVE 471 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + + + + I V +FV V Sbjct: 472 FIVKKARVKQSYIKNAEVYEGFSFVSV 498 >gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 466 Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 147/399 (36%), Positives = 216/399 (54%), Gaps = 31/399 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67 I +AL+E GY T VQ + + +D++VS+QTGSGKT AF L +E D Sbjct: 12 IIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALHKFASEGDQPQ 71 Query: 68 -------------------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108 RF PA P L + PTRELA+QV + A V AV Sbjct: 72 TGKTPNQEAQSARSRGDRPRFKPAQ-PKMLVLTPTRELALQVTTSTDKYGAFMKRVKAVS 130 Query: 109 I-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167 I GG+ ++ + L I+V TPGRL DH+ ++ S L+ +VLDEAD MLD+GF D Sbjct: 131 ILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADRMLDMGFID 190 Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV- 226 DIE I+ ++P+ R+ ++FSAT+ + +AK KDA+ + IA +H +I V Sbjct: 191 DIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHENIKQCVHFVD 250 Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286 LS ++ + ++LR A+VF +T+ L F AL G++ Q R+ Sbjct: 251 DLSHKNRMLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRT 310 Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346 L +R G+ RV +ATDVAARGID+P + V++ +L PE+ +HR GRTGRAGR G++V Sbjct: 311 LDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRTGRAGRNGIAVS 370 Query: 347 VI--PQNMQ-RRAERLFRE-ANVSVV--WEPAPSVEAIR 379 ++ ++M +R ER ++ V V+ +EP S A R Sbjct: 371 LVNHAESMNVKRIERFIKQLIPVEVIEGFEPKRSASAPR 409 >gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 539 Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|260063169|ref|YP_003196249.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501] gi|88783263|gb|EAR14435.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501] Length = 579 Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 133/349 (38%), Positives = 200/349 (57%), Gaps = 16/349 (4%) Query: 13 EALSERGYVNLTSVQ----EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 EA+ G+V T VQ +L P E D++ AQTG+GKT AFGL L L + D Sbjct: 2 EAVDALGFVQPTGVQLETIPLLLGP---ETDLVALAQTGTGKTAAFGLPL----LEKTDS 54 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAH 126 S S AL +APTREL +Q+ EL+ YAK G+ + GG S+ ++ + L+NG Sbjct: 55 ASRKSQ--ALILAPTRELCLQITSELQ-AYAKFIKGLSIVAVYGGASIQQQAKALKNGGQ 111 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGR+ D I K +IS + VLDEADEML++GF +D+ IL +PK + +FS Sbjct: 112 IIVATPGRMKDMISRKLADISSIGYCVLDEADEMLNMGFYEDLVDILSHAPKDKSTWLFS 171 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ A+ +A+++ V + + N + + + VA DR A+ + + Sbjct: 172 ATMPNAVARIARDFMHQPAEVTVGTRNEAIASVQHEYYTVAGRDRYPALRRLADANPGLF 231 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +++FC T+ + + L E + AL G+LSQQ+R + R + ++ +ATDVAAR Sbjct: 232 SVIFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQQQRDLVMNAFRKRQLQLLVATDVAAR 291 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 GID+ D+ VIH +L E HRSGRTGRAG+ G+S+ ++ ++ QRR Sbjct: 292 GIDVDDVTHVIHYQLPDETETYTHRSGRTGRAGKSGVSMVILTRSEQRR 340 >gi|327481186|gb|AEA84496.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166] Length = 556 Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 164/550 (29%), Positives = 283/550 (51%), Gaps = 31/550 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S GY + +Q + L D++ AQTG+GKT AF L + S + PA Sbjct: 20 AISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILS-------KIDPAK 72 Query: 74 -APLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL +APTRELA+QV E Y+K V V GG + + + ++ GA ++V Sbjct: 73 REPQALILAPTRELALQVATAFET-YSKQMPDVSVVAIYGGAPMGPQLKAIRQGAQVIVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++FSAT+ Sbjct: 132 TPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSVLFSATLP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +I +A+ + ++ + IA++ + + I+ ++V + A++ +L I F Sbjct: 192 HSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFDALIAF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L ++ AL+G+++Q +R ++ ++DGR + +ATDVAARG+D+ Sbjct: 252 VRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGLDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + V + ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + R N V Sbjct: 312 ARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQKVAEA 371 Query: 371 PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFLRIHRA 426 P+ + + + +++ PL D+ + +++D L+A P +AA LR Sbjct: 372 RLPNAQQVLDARIKKLTNSLAPLVADA-EATHGELLDKLVADIGCSPRALAAALLRKATN 430 Query: 427 G----LCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDN----FKGSSWFSLSVGSKQ 477 G L E P V S R+R R + G R +G + +G++ Sbjct: 431 GQALTLAEVEREQPLVPTSSPRERTERSDRPERSGDRERRAPVPLAEGRARCRTPLGARD 490 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG 537 AR L+ + G+ R++IG I+V+ + VE+ DG+D L +K + +G Sbjct: 491 GIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLGKLKDTR------VG 544 Query: 538 GEKPDFRGYK 547 G++ R Y+ Sbjct: 545 GKQLKLRRYR 554 >gi|307824474|ref|ZP_07654699.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] gi|307734458|gb|EFO05310.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] Length = 441 Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 126/339 (37%), Positives = 193/339 (56%), Gaps = 1/339 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++++GYV T VQ+ + L KDVL AQTG+GKT +F L L L +D Sbjct: 14 KAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLLQRLAENHDPHQKP 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV ++ A +GG S+ + R L+ G IVV TP Sbjct: 74 RRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTRQLRRGCDIVVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +N+S+++ +VLDEAD MLD+GF DI+ ++ PKKR+ L+FSAT+ A Sbjct: 134 GRLIDHVQQRNINLSNVEVLVLDEADRMLDMGFLPDIKQLMALIPKKRQSLLFSATVPNA 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +LA + V V +A +N ++ R + + + ++ + K +VF Sbjct: 194 IKSLAAQLLNNPVEVEVAKQNATAENVAERVYGIGREYKRELLSYLIGSNNWKQVLVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R K L E + AL G+ +Q R+ AL+ + G+ V +ATD+AARG+D+ D Sbjct: 254 TKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALEQFKTGKVSVLVATDIAARGLDIDD 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 L V++ ++ PE+ +HR GRTGRAG G ++ V P+ Sbjct: 314 LPHVVNFDVPQVPEDYIHRIGRTGRAGANGEALSLVCPE 352 >gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645] gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645] Length = 428 Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL Y+ + +Q AI+ L +DVL A+TG+GKT AFG+ + L P S Sbjct: 18 ALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPIIERL-----EHGPNS 72 Query: 74 -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTRELAVQV E+ L + V GG + + L+ HIVVGTP Sbjct: 73 RNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQMEKLKRAPHIVVGTP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + + L + L+ VVLDEAD MLD+GFR DIE IL P++R+ L+ SAT+ P Sbjct: 133 GRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQTLLLSATVPPT 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ Y ++ +V+ + N I+ R V S + + +V +L+ + AIVFC Sbjct: 193 IEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVELLKREQPQKAIVFCR 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R T+ L++ V + G++ Q R+ AL + + RV +ATDV RGID+ D Sbjct: 253 TKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLVATDVVGRGIDISD 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351 + +I+ ++ ++ +HR GRTGR G++G++ FV P+ Sbjct: 313 VSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEE 352 >gi|307131092|ref|YP_003883108.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] gi|306528621|gb|ADM98551.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] Length = 457 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 206/362 (56%), Gaps = 10/362 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T +Q A L L KDV A+TGSGKT AFGL L L + +F+ S Sbjct: 18 LNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQQL--DAGQFNTQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV EL L Y V+ +C GGV +R L + HI+V TP Sbjct: 75 ---LVLCPTRELADQVANELRRLARYLPNIKVLTLC-GGVPFSIQRDSLIHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L+ +VLDEAD MLD+GF D I+ ++ P +R+ L+FSAT A Sbjct: 131 GRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIAHVPAQRQTLLFSATWPDA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I + + + I+ + V+ S + + + +L + +VFC+ Sbjct: 191 IAAISHRIQRDPLTIAIDTVDELPA-IEQQFYEVSRSGKIDLLQKLLSREQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + V+AL G++ Q++R L +G +RV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVYDALTDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKA 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 LE+VI+ ELS +PE +HR GRT RAG G+++ + +RA L N+ + W Sbjct: 310 LEMVINYELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANALEEMLNMKLNWHSL 369 Query: 373 PS 374 P+ Sbjct: 370 PT 371 >gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 539 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|139473559|ref|YP_001128275.1| DEAD box helicase family protein [Streptococcus pyogenes str. Manfredo] gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str. Manfredo] Length = 539 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K + + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKAVILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|94266993|ref|ZP_01290640.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93452307|gb|EAT02944.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 509 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 204/354 (57%), Gaps = 12/354 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F +P + +A++E GY T +Q A + P L +D+L AQTG+GKT AF L L S Sbjct: 9 FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119 L + R P L +APTRELA+QV E++ Y++ G V GG ++ ++ R Sbjct: 69 L--DTSR----KYPQLLVLAPTRELALQVADEIQA-YSRHLPGFQVLPLYGGQNMAQQLR 121 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 LQ G VVGTPGR+ DH+R L + L AVV+DEADEML +GF D++E IL +P + Sbjct: 122 ALQRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQ 181 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R++ +FSAT++ I +A+ + KD + + + I LV + +A+ IL Sbjct: 182 RQVALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRIL 241 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++F T+ + + LA F AL+G+++Q R ++ ++DG + + Sbjct: 242 EAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVV 301 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352 ATDVAARG+D+ + V++ ++ + E+ +HR GRTGRAGR+G + +FV P+ M Sbjct: 302 ATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREM 355 >gi|188590818|ref|YP_001795418.1| ATP-dependent RNA helicase dbpa [Cupriavidus taiwanensis LMG 19424] gi|170937712|emb|CAP62696.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Cupriavidus taiwanensis LMG 19424] Length = 469 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 139/390 (35%), Positives = 217/390 (55%), Gaps = 11/390 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY +T +Q A L L +D++ A+TGSGKT AFGLAL L + RF Sbjct: 27 LAQLGYDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHRL--DPRRFDVQ-- 82 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + L +GAHIVVGTPG Sbjct: 83 --AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDSLIHGAHIVVGTPG 140 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L+++ + +VLDEAD MLD+GF DDI ++ P+ R+ L+FSAT P I Sbjct: 141 RILDHIDRGSLDLAAINTLVLDEADRMLDMGFFDDIAYVASRCPRDRQTLLFSATYPPGI 200 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+ + ++ + + + + ++ I R V S+R NA+ +L + + + FC+T Sbjct: 201 DKLSHRFLRNPQSLKLEATH-DNTTIRQRFYEVEESERLNAVGRLLDHFRPASTLAFCNT 259 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 +A ++L +Q +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 260 KARCRDLVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLVATDVAARGLDIAQL 319 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ E++ +PE +HR GRTGRA ++G + ++ + R L + W P Sbjct: 320 EAVINVEITPDPEVHVHRIGRTGRADQEGWAFSLVSMDEMGRVGNLEQHHGGEFEWHP-- 377 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKM 403 + + ++R+L + L + G ++K+ Sbjct: 378 -LAELTPASSERLLAPMVTLQMLGGRKEKI 406 >gi|94267131|ref|ZP_01290765.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93452155|gb|EAT02824.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 509 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 204/354 (57%), Gaps = 12/354 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F +P + +A++E GY T +Q A + P L +D+L AQTG+GKT AF L L S Sbjct: 9 FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119 L + R P L +APTRELA+QV E++ Y++ G V GG ++ ++ R Sbjct: 69 L--DTSR----KYPQLLVLAPTRELALQVADEIQA-YSRHLPGFQVLPLYGGQNMAQQLR 121 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 LQ G VVGTPGR+ DH+R L + L AVV+DEADEML +GF D++E IL +P + Sbjct: 122 ALQRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQ 181 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R++ +FSAT++ I +A+ + KD + + + I LV + +A+ IL Sbjct: 182 RQVALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRIL 241 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++F T+ + + LA F AL+G+++Q R ++ ++DG + + Sbjct: 242 EAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVV 301 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352 ATDVAARG+D+ + V++ ++ + E+ +HR GRTGRAGR+G + +FV P+ M Sbjct: 302 ATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREM 355 >gi|254693665|ref|ZP_05155493.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 3 str. Tulya] gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 482 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+VI A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVIA-AVEAAGYTAPTPIQVGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K G+ VA+ IGGVS + R L+ Sbjct: 70 R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGR+ DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + VR+ +A + + R V D D V ++++ Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L +DG+ R+ + Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351 >gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus pyogenes M49 591] Length = 385 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|186474785|ref|YP_001856255.1| ATP-dependent RNA helicase DbpA [Burkholderia phymatum STM815] gi|184191244|gb|ACC69209.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum STM815] Length = 463 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 205/377 (54%), Gaps = 10/377 (2%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F +P Q + L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + Sbjct: 8 FSELPLSQAVLANLTQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 67 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRD 120 L A R+ A A+ + PTRELA QV +E+ L A+ + V GG + + Sbjct: 68 LDAR--RY----AVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTAS 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++GAHIVVGTPGR+ DH+ L++ L +VLDEAD MLD+GF DDI + PK+R Sbjct: 122 LEHGAHIVVGTPGRIMDHLERGSLSLDALNTLVLDEADRMLDMGFFDDIAKVARQCPKER 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT I L++ + ++ V + E S I R V +R +A+ +L Sbjct: 182 QTLLFSATYPEGIAKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGQLLN 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ + I FC+T+ VL F +AL GEL Q+ER L + V +A Sbjct: 241 HYRPVSTIAFCNTKNQCRDLLDVLCAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+ LE VI+ +++ +PE +HR GRTGRA ++G ++ + N R + Sbjct: 301 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIE 360 Query: 361 REANVSVVWEPAPSVEA 377 V W P + A Sbjct: 361 EAQGRDVEWHPLAELNA 377 >gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107] gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107] Length = 607 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 205/369 (55%), Gaps = 7/369 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+E+GY + + +Q+A + +D++ AQTG+GKT AF L L L E+ R +P Sbjct: 70 KTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL--ESGRKTPQ 127 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L +APTRELA+QV + + + V GG + L+ G +VVGT Sbjct: 128 ----VLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVDVVVGT 183 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L+ S L ++VLDEADEML +GF DD+E+IL+ PK+R++++FSAT+ P Sbjct: 184 PGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSATMPP 243 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+K Y D V I ++++ I RA+ V +S + A+ +L G + I+F Sbjct: 244 EIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGEGVIIFA 303 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L QV L+G++ Q +R ++ +R G + +ATDVAARG+D+ Sbjct: 304 RTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVE 363 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LVI+ ++ + E +HR GRTGRAGR G +V + +R L R + Sbjct: 364 RIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERATGQPIELME 423 Query: 372 APSVEAIRE 380 P AI + Sbjct: 424 VPGNTAINQ 432 >gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa] gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa] Length = 463 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 124/358 (34%), Positives = 200/358 (55%), Gaps = 10/358 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + T VQ A L +++D++ A+TGSGKT AF + + LL Sbjct: 31 VTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL + PTRELA Q+G + E L A G+++AV +GGV + L H Sbjct: 91 QKL------FALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKRPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH+ KG N+ LK +V+DEAD +L++ F ++E IL PK+RR ++ Sbjct: 145 VIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVEVEKILKVIPKERRTYLY 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + D VR+ ++S+ + + + + ++ +V IL + Sbjct: 205 SATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLVYILNEMAGQ 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AIVFCST S R +L + F V L G++SQ +R +L + + I TDVA+ Sbjct: 265 TAIVFCSTCVSALRTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKTSTTLICTDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 RG+D+P ++LV++ ++ + ++ +HR GRT RAGR G++V + Q + +R ERL Sbjct: 325 RGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQRIERLI 382 >gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080] gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080] Length = 465 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 127/339 (37%), Positives = 195/339 (57%), Gaps = 10/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+ GY N+T VQ L P L+ +DV++ A+TGSGKT AF + L L N RF Sbjct: 17 DALTGLGYANMTQVQAQSLPPILKRQDVIIQAKTGSGKTAAFAIGLLHHL---NPRFFGV 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A + + PTRELA QVG L ++ + V V + GG +R L +GAHIVVGT Sbjct: 74 QA---VVMCPTRELAEQVGEATRQLASRMSNVKVVMLCGGKPFGAQRDSLHHGAHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH++ L + + VLDEAD MLD+GF D + I P R+ L+ SAT Sbjct: 131 PGRIQDHLQRGTLELKGVTTFVLDEADRMLDMGFADVMAEITAKLPADRQTLLLSATFPD 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNILRYHGAKNAIV 249 I ++++ QK+ +++ + +E H ++ V V +R+ A++ + ++ NA+V Sbjct: 191 DIKKISRSIQKNPIQITVDAEV-VHDEVVLEQVFFEVQKHERNVALLALFEHYRPANAMV 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ + + L EH + A+ G+L Q+ER L + V +A+DVAARG+D Sbjct: 250 FCNTKKQCAEVARFLREHDIEAAAIHGDLEQRERDQVLLQFANNSCPVLVASDVAARGLD 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P LE+V++ EL + + +HR GRTGRAG G + ++ Sbjct: 310 IPSLEMVVNFELPRDADTYVHRIGRTGRAGESGKAFSIV 348 >gi|255020706|ref|ZP_05292767.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756] gi|254969860|gb|EET27361.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756] Length = 615 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 172/543 (31%), Positives = 275/543 (50%), Gaps = 50/543 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E GY + +Q + P L +DV+ AQTG+GKT AF L L S + + RF Sbjct: 24 AVREIGYEQPSPIQAQSIPPLLAGRDVIGLAQTGTGKTAAFALPLLSRV-DLSLRF---- 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELA+QV ++ YAK G V GG S+ + + LQ G +VVGT Sbjct: 79 -PQILVLAPTRELAIQVAEAMQS-YAKFLPGFHVLPIYGGQSMGLQLKQLQRGVQVVVGT 136 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R + L + L+AVVLDEADEML +GF D +E IL +P +R++ +FSAT+ Sbjct: 137 PGRIQDHLRRETLKLDRLQAVVLDEADEMLRMGFIDAVEEILKHTPTQRQVALFSATMPE 196 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI +A+ Y +D + + I S + I R LV+ + + +A+ IL + I+F Sbjct: 197 AIRRIARTYLRDPLEIRIKSTTSTVAAIRQRYWLVSGTHKLDALTRILEVEDSNAWIIFV 256 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L + AL+G+++Q R ++ ++ G + +ATDVAARG+D+ Sbjct: 257 RTKTATVELAERLEARGYACGALNGDMTQAMREQTIERVKSGSLDIVVATDVAARGLDVE 316 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + VI+ ++ ++ E +HR GRTGRAGRKG ++ FV P+ ER +A + Sbjct: 317 RITHVINYDIPNDTEAYVHRIGRTGRAGRKGEAILFVAPR------ERYLLKAIERATGQ 370 Query: 371 PA-----PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA- 418 P PS+E + +R + + ++ ++ L+A++ E+IAA Sbjct: 371 PIEPMHLPSLEDVADRRTSQFKEQ--LTTVLETEDLDRFASLVAEYQSEQEVSLERIAAA 428 Query: 419 -GFLRIHRAGLC--APEEITPVSLVSG-------RDRFRDDSRAFKVGGGSRDNFKGSSW 468 FL L AP + + G +R R G +R + Sbjct: 429 LAFLAQRDRPLVPDAPPAVPSLDKAPGPRGARRLEERKERAPRERAAAGENRPDDTPMIL 488 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528 + L+VG A+ + ++ + SG+ + I ++V D + VE+ AD LD Sbjct: 489 YRLAVGESHGAQVKNIVGAIANESGLPSRLIRKVQVHDDYSTVELPAD----------LD 538 Query: 529 KGI 531 +GI Sbjct: 539 RGI 541 >gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM 18053] Length = 590 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 204/369 (55%), Gaps = 7/369 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL E G+ + +Q + L+ DV+ AQTG+GKT AFG+ + + + Sbjct: 18 ILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVLERI------DT 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 ++A AL + PTRELAVQV EL L GV + GG S+ R+ R L+ G HIVV Sbjct: 72 SSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLKKGVHIVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ + L ++ +VLDEADEMLD+GFR+DIE IL P+ R+ ++FSAT+ Sbjct: 132 GTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTILFSATM 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I ++ K + D + + + +I+ V + + ++ H K+ +V Sbjct: 192 SKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLIDMHHIKSLLV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V + L + + G+L QQ+RSN + + G + +ATDVAARGID Sbjct: 252 FCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVATDVAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + L+ VI+ ++ + E +HR GRTGRAG G + ++ ++ + R + + V + Sbjct: 312 VSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIESYTKVKIEK 371 Query: 370 EPAPSVEAI 378 PS E I Sbjct: 372 GVIPSFEDI 380 >gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 539 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|70733057|ref|YP_262830.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf-5] gi|68347356|gb|AAY94962.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens Pf-5] Length = 461 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 140/391 (35%), Positives = 211/391 (53%), Gaps = 12/391 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N R+ A Sbjct: 21 LDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L I PTRELA QV +E+ L A+ + V GGVS + L++GAHI+VGTPG Sbjct: 78 ---LVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEHGAHIIVGTPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L +VLDEAD MLD+GF D IE I++ +P +R+ L+FSAT I Sbjct: 135 RIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTLLFSATYPVGI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + +D V A + I+ R ++ +R +A+ +L + + + FC T Sbjct: 195 KQLASKFMRDPQTVK-AEAFHDDTQIEQRFYEISPEERMSAVTKVLHHFRPASCVAFCFT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V L V L G+L Q++R L M + V +ATDVAARG+D+ L Sbjct: 254 KQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDAL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 ++VI+ EL+ + E +HR GRTGRAG KG++V ++ + RA+ + + + W+ Sbjct: 314 DMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIEQLQKAPLNWD--- 370 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 V+ ++ + LQ P+ I G K V Sbjct: 371 QVDNLKSQGGAP-LQPPMSTLCIAGGRKDKV 400 >gi|315178988|gb|ADT85902.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii NCTC 11218] Length = 460 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 209/367 (56%), Gaps = 11/367 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L G+ ++T +Q L L +DV+ +TGSGKT AFGL + L + R Sbjct: 19 LDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQNLHVKRFRVQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +L + PTRELA QV ++ L A + V GG+ + + L++GAHI+VGTPG Sbjct: 75 --SLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ +++S L +VLDEAD ML++GF++ ++ I+ +PK+R+ L+FSAT AI Sbjct: 133 RILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQTLLFSATYPEAI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +A++ +DA+ + +AS + S + RD A+ +L H ++A+VFC+T Sbjct: 193 QEIAQSVTRDALMIKVASTHETSSIRQQFYKVEGTEARDEALATLLLNHQPESAVVFCNT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V L F V+ L G++ Q+ER AL + V +ATDVAARG+D+ +L Sbjct: 253 KREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVATDVAARGLDVDNL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372 + V + ELS +PE +HR GRTGRAG +G+++ F + M R A+ E + +V PA Sbjct: 313 DAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQ---IEEYMDIVISPA 369 Query: 373 PSVEAIR 379 E ++ Sbjct: 370 ELPEPVK 376 >gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL J1-023] Length = 516 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 147/444 (33%), Positives = 238/444 (53%), Gaps = 30/444 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +N+ Sbjct: 13 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKNNNVQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 73 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + +++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 127 TPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M ++R + L Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 366 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA Sbjct: 367 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAA 417 Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443 L++ L + TPV + R Sbjct: 418 MLKM----LAKEPDKTPVHITEER 437 >gi|73539745|ref|YP_294265.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha JMP134] gi|72117158|gb|AAZ59421.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] Length = 474 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 141/390 (36%), Positives = 212/390 (54%), Gaps = 11/390 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY +T +Q A L L D++ A+TGSGKT AF LAL L A RF Sbjct: 32 LAQLGYDEMTPIQAASLPLTLAGHDLIAQAKTGSGKTAAFALALLHRLDAR--RFDVQ-- 87 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + L +GAH+VVGTPG Sbjct: 88 --AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDSLVHGAHVVVGTPG 145 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L +S + +VLDEAD MLD+GF DDI ++ P++R+ ++FSAT I Sbjct: 146 RILDHIDRGSLELSAINTLVLDEADRMLDMGFFDDISYVASRCPRERQTMLFSATYPAGI 205 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + V +A E S I V S+R +A+ +L + + + FC+T Sbjct: 206 DKLSQKFLRKPQEVKLA-EKHDSSSIRQYFYEVDESERLSAVGRLLDHFRPASTLAFCNT 264 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 +A +L FQ +AL G+L Q++R L +G V +ATDVAARG+D+ L Sbjct: 265 KARCRDLVDLLRGQGFQALALHGDLEQRDRDQVLVQFANGSCSVLVATDVAARGLDIAQL 324 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ E++ +PE +HR GRTGRAG +G + ++ + R L + W P Sbjct: 325 EAVINVEITPDPEVHIHRIGRTGRAGEEGHAFSLVSMDEMGRVGNLEQHHGGEFEWHP-- 382 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKM 403 + +R +R+L + L + G ++K+ Sbjct: 383 -LAELRAASTERLLPPMVTLQMLGGRKEKI 411 >gi|315304037|ref|ZP_07874464.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596] gi|313627596|gb|EFR96302.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596] Length = 474 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 208/382 (54%), Gaps = 20/382 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY + T VQ+ ++ L KD++ +QTGSGKT AF + +A ++ E ++ Sbjct: 14 IKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWEENK-- 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTREL VQV E + + A G +++ +L HIVVG Sbjct: 72 ----PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PKKR+ L FSAT+ Sbjct: 128 TPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFSATMP 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ D V + +A+E + + I + + + +++ + ++L +AI+F Sbjct: 188 EEMHDLIKRYQNDPVVIEMAAE--KTNPITH--IEMQTENKEKTLQDVLITENPDSAIIF 243 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V + +L + G L Q+ER A+ + G++R IATDVA RGID+ Sbjct: 244 CNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGRGIDV 300 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ LVI+ +L EN +HR GRTGRAG G ++ + N + N+++ + Sbjct: 301 ENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDIEAMLNITIQKK 360 Query: 371 PAPSV-------EAIRERDAQR 385 P++ EA R++ +R Sbjct: 361 RKPTIIEVKASEEAFRKKQQKR 382 >gi|94990733|ref|YP_598833.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270] gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270] Length = 539 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + +++ V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|157368742|ref|YP_001476731.1| ATP-dependent RNA helicase DeaD [Serratia proteamaculans 568] gi|157320506|gb|ABV39603.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568] Length = 653 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 177/566 (31%), Positives = 272/566 (48%), Gaps = 50/566 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AF L L L A Sbjct: 21 ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDAS------LK 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVVGTP Sbjct: 75 APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + K+ V I S DI V ++ A+V L AI+F Sbjct: 195 IRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAIIFVR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 255 TKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR R + R +++ Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIPEVE 373 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP-------EKIAAGFLRI- 423 P+VE + ER + ++ + M LLAK P E +AA L++ Sbjct: 374 LPNVELLGERRLAKFAAK--VQQQLESSDLDMYRGLLAKLQPGEEELEMETLAAALLKMA 431 Query: 424 --HRAGLCAPEEITPVSLVSGRDRFR--------------DDSRAFKVGGGSRD-----N 462 R + P+ PV R F DSR GG R + Sbjct: 432 QGERPLILPPD---PVFKPRQRREFNDRDDRGSDRRRDARPDSRD---GGAERPRRERRD 485 Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGV 518 + + VG E R ++ + I+ + IG I++ + +E+ + + Sbjct: 486 VGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAGHSTIELPKGMPGEIL 545 Query: 519 DLLRRTVKLDKGIQLKYLGGEKPDFR 544 RT L+K + ++ LG +P R Sbjct: 546 SHFTRTRILNKPMNMQLLGDAQPHER 571 >gi|94263991|ref|ZP_01287792.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93455584|gb|EAT05769.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 509 Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 204/354 (57%), Gaps = 12/354 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F +P + +A++E GY T +Q A + P L +D+L AQTG+GKT AF L L S Sbjct: 9 FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119 L + R P L +APTRELA+QV E++ Y++ G V GG ++ ++ R Sbjct: 69 L--DTSR----KYPQLLVLAPTRELALQVADEIQA-YSRHLPGFQVLPLYGGQNMAQQLR 121 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 LQ G VVGTPGR+ DH+R L + L AVV+DEADEML +GF D++E IL +P + Sbjct: 122 ALQRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQ 181 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R++ +FSAT++ I +A+ + KD + + + I LV + +A+ IL Sbjct: 182 RQVALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRIL 241 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++F T+ + + LA F AL+G+++Q R ++ ++DG + + Sbjct: 242 EAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVV 301 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352 ATDVAARG+D+ + V++ ++ + E+ +HR GRTGRAGR+G + +FV P+ M Sbjct: 302 ATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREM 355 >gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus str. Jelinkova 176] gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus str. Jelinkova 176] Length = 538 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 204/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + + AL IAPTRELAVQ EL GV V GG S+ ++ + Sbjct: 61 NKIRTDENIIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P++ Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + K+ V I ++ + +++ V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L F+ + G+L Q +R ++ + + + + Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ ++ V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|88706512|ref|ZP_01104216.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71] gi|88699224|gb|EAQ96339.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71] Length = 462 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 135/346 (39%), Positives = 196/346 (56%), Gaps = 11/346 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL+ GY ++T VQ + L+ KDV+ A+TGSGKT AFG+ L T+ N RF Sbjct: 17 EALAALGYEHMTPVQAQSIPLLLQGKDVIARARTGSGKTAAFGIGLLQTI---NPRFFGV 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHIVVG 130 A L + PTRELA QV EL L ++ + V +C GG + L++GAHIVVG Sbjct: 74 QA---LVLCPTRELAEQVSGELRRLASRMANIKLVTLC-GGKPFGPQVGSLEHGAHIVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ L + LK +VLDEAD MLD+GF D +E I+ +P+ R+ L+FSAT Sbjct: 130 TPGRIQDHLGRDTLKLDGLKVLVLDEADRMLDMGFADSMEAIVAKTPRSRQTLLFSATYP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I ++ + Q+ V + E + I+ V +R ++ + ++ NA+V Sbjct: 190 ENIRKMSASIQRQPSMVTVDEEVAHKEEVIEQLFYEVQKHERHTTLLALFEHYTPANAVV 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ VL ++ + A+ G+L Q+ER L + V +ATDVAARG+D Sbjct: 250 FCNTKKQCDEVASVLRDYDIEARAIHGDLDQRERDQVLVQFANNSCPVLVATDVAARGLD 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 + L +VI+ EL +PE +HR GRTGRAG G+++ VIP R Sbjct: 310 IKSLAMVINYELPRDPEVYVHRIGRTGRAGETGLAMSIVIPSETHR 355 >gi|325103790|ref|YP_004273444.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] gi|324972638|gb|ADY51622.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] Length = 372 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 202/359 (56%), Gaps = 13/359 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +AL E + T +Q+ + L+E KD + AQTG+GKT AFGL + + A Sbjct: 16 QALEENNIIKPTEIQKLAIPYLLKEGKDFIGQAQTGTGKTAAFGLPVLEQIDAN------ 69 Query: 72 ASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + L + PTREL Q+ ++L Y+ + GG + + L+ HIVV Sbjct: 70 SKVIQVLILCPTRELGQQIAKQLFKFTKYSDKKIFTEAVYGGEKIDIQIGRLKRPTHIVV 129 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + K +N+ H+K ++LDEADEML +GF+ DI+ IL+ + +R +FSATI Sbjct: 130 ATPGRLIDLLERKAINLDHVKTIILDEADEMLSMGFKKDIDKILEYTNGQRYTWLFSATI 189 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 A+ + K+Y + +V I E + +ID++ ++V L D+ + + L+ + IV Sbjct: 190 PAALDDIIKSYMDEPFKVEIRKEQLVNENIDHKYMVVDLKDKLDLLSRFLKENSKARGIV 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ + +K L F+V A+ G++ Q++R ++ + R + IATD++ARGID Sbjct: 250 FCRTKKNAELLSKQLYARNFKVEAIHGDMGQRDREKVMRAFKSERLPILIATDISARGID 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSV 367 + +L VIH +L E HRSGRT R GRKG+S +F+ P ++ + + EAN+++ Sbjct: 310 VQNLNYVIHYDLPDQMEYYTHRSGRTARGGRKGLSLIFIAPNDIDKVKD---LEANLNI 365 >gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE] gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE] Length = 471 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 13/366 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+ G+ T +QE + L KDV+ AQTG+GKT AFG+ + + A + Sbjct: 15 KALAGMGFEEATPIQEQAIPAALAGKDVIGQAQTGTGKTAAFGIPMIENIDAGSGDIQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + I PTRELAVQV EL + G+ GG + R+ L+ I+VGTP Sbjct: 73 ----GIVITPTRELAVQVAEELNRIGEFRGIHTLPIYGGQDIKRQINGLKRRPQIIVGTP 128 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ R K +++ +++ VVLDEADEMLD+GF +DIE IL +P+ R+ L+FSATI Sbjct: 129 GRLVDHMMRRKTISLKNIRTVVLDEADEMLDMGFIEDIEEILKRTPEGRQTLLFSATIPA 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA+ + KD + I S++ S + V + + +L AIVF Sbjct: 189 PIRKLAERFMKDPQTIGIKSKSMTVSGTEQAYYEVPEKHKFEVLCRLLDVQLPALAIVFV 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V TK L E + + G+L+Q +R + ++ ++G V +ATDVAARG+D+ Sbjct: 249 RTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEVLVATDVAARGLDIS 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVV 368 + V + ++ +P++ +HR GRTGRAG+KG ++ FV P+ M R E++ R S+ Sbjct: 309 GVTHVYNLDIPQDPDSYVHRIGRTGRAGKKGTAITFVTPREMGLLRFIEKITRH---SIE 365 Query: 369 WEPAPS 374 P PS Sbjct: 366 RRPIPS 371 >gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11] gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11] Length = 640 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 196/343 (57%), Gaps = 9/343 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL + G+V T +Q A + L +D L AQTG+GKT AF L L + + L +++ Sbjct: 20 ALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLKQHN----- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L GAHI+VGT Sbjct: 75 --PQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSRGAHIIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D + LN+ + +LDEADEML +GF DD+ +IL+ +P + ++FSAT+ P Sbjct: 133 PGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILFSATMPP 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + T+ Y +D RV++A N ++ +V ++D A+ +L +IVF Sbjct: 193 MVKTIVDRYLRDPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETEETDASIVFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR R L+ F+ AL G++ Q +R + +++G + +ATDV ARG+D+P Sbjct: 253 RTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVATDVVARGLDVP 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N R Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMR 355 >gi|84385240|ref|ZP_00988272.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01] gi|84379837|gb|EAP96688.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01] Length = 459 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 205/353 (58%), Gaps = 11/353 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L GY +T +Q L L KDV+ +TGSGKT AFGL + L + Sbjct: 13 PELL-NTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQNLRVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R +L + PTRELA QV +E+ L + V GG+ + + L++GAH Sbjct: 72 RVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ + +++S L +VLDEAD ML++GF+D ++ +++++PK R+ L+FS Sbjct: 126 ILVGTPGRILDHLERERIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245 AT I ++A + V + S HS I V ++ RD+A+ +L +H + Sbjct: 186 ATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHHQPE 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +A+VFC+T+ V L+ F V+ L G++ Q+ER AL + + +ATDVAA Sbjct: 245 SAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357 RG+D+ +L+ V + ELS +PE +HR GRTGRAG KG+++ F + M R A+ Sbjct: 305 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQ 357 >gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096] gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096] Length = 416 Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ Q I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + KD V I ++ + ++D V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + + Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|301064349|ref|ZP_07204778.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2] gi|300441525|gb|EFK05861.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2] Length = 595 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 160/532 (30%), Positives = 265/532 (49%), Gaps = 33/532 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +A+ + GY T +Q+ + P L E +D++ AQTG+GKT A+GL L + R Sbjct: 14 KAVQDLGYKEPTPIQKKAI-PALLENRQDLVGLAQTGTGKTAAYGLPLLQLIDFSTSRVQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 L + PTREL Q+ ++L Y + +VAV GG + + R ++ GA I+ Sbjct: 73 ------GLILCPTRELCFQISKDLARYSRYVEHAKIVAV-YGGAGMEPQIRQIKKGAQII 125 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL D I+ +N+ + VVLDEADEML +GF++D++ IL +P ++R +FSAT Sbjct: 126 TATPGRLLDLIKRGIVNLHDIDYVVLDEADEMLTMGFQEDLDEILAQTPPEKRSWLFSAT 185 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + +++NY KD + + + +N S+I + +V +R A+ I+ YH ++ Sbjct: 186 MTAPVARISQNYLKDPLEITVGRKNSGASNISHFKYVVLEKNRYPALKRIIDYHPDIFSL 245 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC TR + L + +L G+LSQ +R + R+ ++ +ATDVAARG+ Sbjct: 246 VFCRTRKETQAVAEKLIRDGYNAESLHGDLSQTQRDYVMGRFRERSLQILVATDVAARGL 305 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ D+ VIH L P HRSGRT RAG+ G S+ ++ R+ + + V Sbjct: 306 DVDDISHVIHYNLPDEPGAYTHRSGRTARAGKSGASIVLMNTRENRKLAHVEQVTGVRFR 365 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-------LAKHDPEKIAAGFL 421 E PS A+ E+ R+++ + +D + +E +D LA E++ F+ Sbjct: 366 HEKVPSGRAVCEKQLYRMVEKLVDVD-VNHEE---IDAFLPPVYETLAGLTKEQLIQHFV 421 Query: 422 RIHRAGLC----APEEI---TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474 I E+I TP S R + R K ++ + F L++G Sbjct: 422 SIEFNRFLDYYKGSEDINARTPQKRGSTEKRTPAEKRTSKY--SPKEPTETQKLF-LNMG 478 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 + + ++C SGI IG I V + +F+EV D + +++K Sbjct: 479 RLDNIQKGAITRLVCDKSGIRSNQIGKIEVMREFSFLEVDTAWTDHVMKSMK 530 >gi|293393148|ref|ZP_06637463.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582] gi|291424294|gb|EFE97508.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582] Length = 642 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 173/587 (29%), Positives = 277/587 (47%), Gaps = 39/587 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AF L L L A Sbjct: 21 ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDAS------LK 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVVGTP Sbjct: 75 APQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + K+ V I S DI ++ A+V L AI+F Sbjct: 195 IRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRFLEAEDFDAAIIFVR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 255 TKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 374 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLRI--- 423 P+ E + +R + ++ + M LLAK PE+ +AA L++ Sbjct: 375 PNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLAKLQPEEELDIETLAAALLKMAQG 432 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG------------SRDNFKGSSWFSL 471 R + P+ PV R F D R + + + Sbjct: 433 ERPLILPPD---PVFKPRQRREFNDRDDRGGDRRRDSRDGGERPQRRERRDVGEMQLYRI 489 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKL 527 VG E R ++ + I+ + IG I++ + +E+ + ++ RT L Sbjct: 490 EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGEILNHFTRTRIL 549 Query: 528 DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRF--KRFKGASK 572 +K + ++ LG +P R + G + + G + F +R +GA + Sbjct: 550 NKPMNMQLLGDAQPHERRERREGGNAGGERRGNGRPFNGERREGAPR 596 >gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii OhILAs] Length = 461 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 127/377 (33%), Positives = 205/377 (54%), Gaps = 9/377 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I E L G V T +Q + L+ KD++ AQTG+GKT AF L + + Sbjct: 10 IIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLPILQKINKNQ 69 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 AL +APTRELA+Q+ E + + V V GG V ++ L+ G H Sbjct: 70 KDVQ------ALILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKLKGGMH 123 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V+ TPGRL DH+R +++ + +VLDEAD+ML +GF +++E+I+ +P+ R+++++S Sbjct: 124 VVIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLMLYS 183 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I L Y K+ V + I S +I V + A++++++ Sbjct: 184 ATIPKGIRALTNRYMKNPVEIRIHSNKVTLDEIKQLVVETTDRHKQEALMHMIKQENPFL 243 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVFC T+ V + L E F L G+++Q +R ++ R+ + ++ +ATDVAAR Sbjct: 244 AIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQILVATDVAAR 303 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREA 363 GID+ + V + ++ + E +HR GRTGRAG KGM++ F P++ A ER + Sbjct: 304 GIDVEGITHVFNYDIPQDVEGYIHRIGRTGRAGDKGMAITFAAPKDRDSLAMIERGINQK 363 Query: 364 NVSVVWEPAPSVEAIRE 380 V + ++P VE+I E Sbjct: 364 IVKITFKPEGRVESIEE 380 >gi|77461469|ref|YP_350976.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1] gi|77385472|gb|ABA76985.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1] Length = 478 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 139/391 (35%), Positives = 211/391 (53%), Gaps = 12/391 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N R+ A Sbjct: 38 LDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 94 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L I PTRELA QV +E+ L A+ + V GGVS + L++GAHI+VGTPG Sbjct: 95 ---LVICPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 151 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D IE I++ +P +R+ L+FSAT I Sbjct: 152 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIEQTPARRQTLLFSATYPVGI 211 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + +D V A + I+ R ++ +R +A+ +L + + + FC T Sbjct: 212 KQLASKFMRDPQTVK-AEAFHDDTQIEQRFYEISPEERMSAVTKVLHHFRPASTVAFCFT 270 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V L V L G+L Q++R L M + V +ATDVAARG+D+ L Sbjct: 271 KQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDAL 330 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 ++VI+ EL+ + E +HR GRTGRAG KG++V ++ + RA+ + + + W+ Sbjct: 331 DMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIEQLQKTPLNWD--- 387 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 V+ ++ + LQ P+ I G K V Sbjct: 388 QVDNLKSQGGAP-LQPPMSTLCIAGGRKDKV 417 >gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3] gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3] Length = 644 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 161/521 (30%), Positives = 266/521 (51%), Gaps = 41/521 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L D L AQTG+GKT AF L L + L + + Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKLDLDQRK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAH+VVGTP Sbjct: 75 -PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKNGAHVVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I + L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P Sbjct: 134 GRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V V++A +N + + +V ++D A+ +L +IVF Sbjct: 194 LKNIVERFLREPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV-- 367 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQL 373 Query: 368 ----------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417 + + A +EA +E + LD +K+ L + DP +A Sbjct: 374 PLRDQVAEARLSKLAAELEAEKEHKS---------LDKFAELVEKLQTSL--EIDPAMLA 422 Query: 418 AGFLRIH---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLS 472 A L+ R E+ P+ RD+ + + G +F W + L Sbjct: 423 AMLLKRQQGKRPLFYIGED--PMVEAIERDK-QRRKERREGGREGGRSFNTQDWDTYQLQ 479 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 VG +Q + + ++ L G+ + SIGAI++ TFV++ Sbjct: 480 VGREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 520 >gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM 20603] Length = 657 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 162/539 (30%), Positives = 264/539 (48%), Gaps = 39/539 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P I A+ + G+ + +Q+ + +D+ AQTG+GKT AFG+ L +++ Sbjct: 55 NLPNQIQRAVDDLGFTVPSKIQQQAIPVLFEGRDITGIAQTGTGKTAAFGIPLLASIDTS 114 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + AL +APTRELA+QV +E + G+ GG + R L+ G Sbjct: 115 VRQVQ------ALVLAPTRELAIQVSEAIESFARHMPGLETLAVYGGSPYPPQIRALKTG 168 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 H+VVGTPGR+ DHI L++S ++ +VLDEADEML +GF DD+E + +P R++ + Sbjct: 169 VHVVVGTPGRVIDHIERGTLDLSQVRFLVLDEADEMLRMGFADDVEKVFSETPADRQVAL 228 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ PAI +A+ + + V + +A ++ + ID +V + ++ +L Sbjct: 229 FSATMPPAIRRVAQRHLTNPVEIAVARQSTTVTAIDQEYAVVPFRHKTGSLYRVLATSDV 288 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVFC TR + L E +SG++ Q++R ++ +R+G+ V +ATDVA Sbjct: 289 EAAIVFCRTRGAAEEVGAALIERGVSAATISGDVPQKDREKIVERLRNGQLDVLVATDVA 348 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFR 361 ARG+D+ + LV++ ++ PE +HR GRTGRAGR+G ++ F+ P + R ER R Sbjct: 349 ARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRQGRALSFITPAERGKLRSIERTIR 408 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH--DPEK---I 416 + P PS + E + +L + I+ M + L+ + D E Sbjct: 409 TELKEI---PIPSPADVSEHKMRTMLTN--LSTRIEAGRLSMYEQLIDSYLADSEHSATT 463 Query: 417 AAGFLRIHRAGLCAP------EEI------------TPVSLVSGRDRFRDDSRAFKVGG- 457 A L G P EE S G DR R D A + G Sbjct: 464 VAAALAALAVGDSGPRARADQEEYERQVADEASSRRQASSRTRGDDRGRSDRPARERSGR 523 Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +R + + ++VG A+ R ++ L G+ +G I + + V++SAD Sbjct: 524 PARSRDGEGTTYRIAVGYNDGAQPRGIVGALTNEGGLRGSDVGRINMFATFSLVDISAD 582 >gi|94311518|ref|YP_584728.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans CH34] gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34] Length = 556 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/366 (37%), Positives = 210/366 (57%), Gaps = 17/366 (4%) Query: 2 KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 + FE+ P+++ AL+E+GY T +Q + L KDV+ +AQTG+GKT F L + Sbjct: 73 QTFESFGLDPRIL-RALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPI 131 Query: 59 ASTLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 LL N SPA P+ AL + PTRELA QV + T + V GGV ++ Sbjct: 132 IQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNP 191 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + L+ G I+V TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF D++ I++ Sbjct: 192 QTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLL 251 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNA 234 P +R+ L+FSAT SP I LA +Y K V + +A N + ++ R V+ + D + A Sbjct: 252 PAQRQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENV--RQVVYQVQDGHKQAA 309 Query: 235 IVNILRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 +V++L+ ++ IVF +++ SR + L A+ G+ +Q ER L Sbjct: 310 VVHLLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGF 369 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVI 348 ++G +ATDVAARG+D+P + VI+ +L + E+ +HR GRTGRAG G +S+FV Sbjct: 370 KNGTIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFV- 428 Query: 349 PQNMQR 354 P N R Sbjct: 429 PGNDDR 434 >gi|38233613|ref|NP_939380.1| DEAD-box helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae] Length = 680 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 217/375 (57%), Gaps = 7/375 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I +A+++ G+ + +Q + ++ DV+ AQTG+GKT AF L + S + + Sbjct: 74 LPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRIDVKK 133 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 134 ------RHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGA 187 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH+ L+IS+L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +F Sbjct: 188 QIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALF 247 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L+++Y KD + + S+ R +++I R + VA ++ +A+ IL + Sbjct: 248 SATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFE 307 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 308 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 367 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V + ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 368 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 427 Query: 366 SVVWEPAPSVEAIRE 380 ++ P+V+ + E Sbjct: 428 KLIEMDLPTVDEVNE 442 >gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix] gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix] Length = 627 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 140/356 (39%), Positives = 201/356 (56%), Gaps = 11/356 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + AL + G+ T VQ A + L DVL AQTG+GKT AFGL L ++ R Sbjct: 14 ESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLIDSIDPAQRR 73 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHI 127 AL +APTRELA QV LE A G+ + GG + + R L++GA + Sbjct: 74 VQ------ALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRDGAQV 127 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DHI+ L + L+ VVLDEADEML +GF ++IE+IL+ +P +R+ +FSA Sbjct: 128 VVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQTTLFSA 187 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-GAKN 246 T+ I +A + ++ + I + N +DID LV + A+ ++ G Sbjct: 188 TMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMIEVEAGLDA 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF T+A+ + + L Q L+G++ Q ER + +RDGR V +ATDVAAR Sbjct: 248 AIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVATDVAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERL 359 GID+P + V + + + E +HR GRTGRAGRKG ++ F+ P+ M R ERL Sbjct: 308 GIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDIERL 363 >gi|256821842|ref|YP_003145805.1| DEAD/DEAH box helicase domain-containing protein [Kangiella koreensis DSM 16069] gi|256795381|gb|ACV26037.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM 16069] Length = 460 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 199/349 (57%), Gaps = 13/349 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ G+ +T +Q L L KDV+ A+TGSGKT FGL + L +N FS S Sbjct: 19 LADLGFERMTPIQADALPQVLEGKDVIAQAKTGSGKTAVFGLGILEKLDPKN--FSVQS- 75 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + + PTRELA QV E+ L V + GG + + L++GAHIVVGTPG Sbjct: 76 ---MVLCPTRELAEQVAEEIRRLARPIANVKILTLCGGTPLRPQADSLKHGAHIVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ + L++ + +VLDEAD MLD+GF D ++ I++ P++R+ L+FSAT P I Sbjct: 133 RIVDHLEKQTLDLDAISTLVLDEADRMLDMGFEDSMDAIVNELPRQRQTLLFSATYPPQI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +A+ V V A E S I YR + +RD A+ +L + + ++F Sbjct: 193 QAIAERVMVKPVLVQ-ALEKHDSSSIKQDFYR--ISDEGERDVAVRLLLLKYRPDSTVIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T+ L H F V+AL G+L Q+ER AL + + +ATDVAARG+D+ Sbjct: 250 CNTKRHVKDLTQELKRHGFSVLALHGDLEQKERDQALIRFANNSVSIMVATDVAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 L+LVI+ ++S+PE +HR GRTGRAG KG + ++ + + RL Sbjct: 310 DSLDLVINYHIASDPEIHVHRIGRTGRAGNKGHACSIVISKEKHKVARL 358 >gi|329900791|ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] gi|327549380|gb|EGF33948.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 468 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 202/361 (55%), Gaps = 25/361 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALASTLLAEN 66 +AL+E GY+ TSVQE + + +D+LVS+QTGSGKT AF L A A+ L + Sbjct: 14 KALTESGYIKPTSVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPALHKFATAAELQLAD 73 Query: 67 DRFSP-----------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109 +P A+ P L + PTRELA+QV + ++ + AV I Sbjct: 74 SSKTPNQEKQSALARGERPRFKAAQPKMLVLTPTRELALQVTTATDKYGSQMRRIKAVSI 133 Query: 110 -GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 GG+ ++ + L I+V TPGRL DH+ ++ S L+ +VLDEAD MLD+GF DD Sbjct: 134 LGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLDEADRMLDMGFIDD 193 Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-A 227 IE I+ ++P+ R+ ++FSAT+ + +AK K+ + + IA +H +I R V Sbjct: 194 IEKIVAATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATKHENISQRVHFVDD 253 Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 LS ++ + ++LR A+VF +T+ L F AL G++ Q R+ L Sbjct: 254 LSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTL 313 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 MR G+ RV +ATDVAARGID+P + V + +L PE+ +HR GRTGRAGR G++V + Sbjct: 314 DGMRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGIAVSL 373 Query: 348 I 348 + Sbjct: 374 V 374 >gi|262066543|ref|ZP_06026155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium periodonticum ATCC 33693] gi|291379777|gb|EFE87295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium periodonticum ATCC 33693] Length = 528 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 145/438 (33%), Positives = 233/438 (53%), Gaps = 19/438 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I + LS++GY + T +Q + L+ +KD++ AQTG+GKT AF L + + F Sbjct: 19 ILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENF 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VV Sbjct: 72 EHSDHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D I K L ++ LK VLDEADEML++GF +DIE IL + +RML FSAT+ Sbjct: 132 GTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFVEDIEKILTFTNDDKRMLFFSATM 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNA 247 P I +AK + K+ + + S R+ + + +++RD A+ I+ Sbjct: 192 PPEIMKIAKTHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYG 249 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARG Sbjct: 250 IIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARG 309 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS 366 ID+ DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + Sbjct: 310 IDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKE 368 Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424 + E P V+ + + RI+ D + +D+ KK+ LL + E I A L++ Sbjct: 369 IRKESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAENIVASLLKLT 428 Query: 425 RAGLCAP---EEITPVSL 439 + + EI+PV + Sbjct: 429 YSDVLDESNYNEISPVKM 446 >gi|261368147|ref|ZP_05981030.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176] gi|282569910|gb|EFB75445.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176] Length = 395 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/356 (35%), Positives = 198/356 (55%), Gaps = 10/356 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I A G+ +T +QE + + D++ A TG+GKTVAFG+ + S Sbjct: 11 PEII-RATQAMGFTEMTEIQEKAIPLMMDGHDMIAKAPTGTGKTVAFGIPILS------- 62 Query: 68 RFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 + PAS P A+ ++PTRELA Q+ ++L+ L + VC+ GG + +++R L+ G Sbjct: 63 KVDPASLKPQAVVLSPTRELAQQIAQDLQNLAQFLPAIKIVCVYGGAGLDKQQRQLKAGC 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL DH R +++S ++ VVLDEADEML++GF D+ I+D ++ + MF Sbjct: 123 QIVVATPGRLMDHYRHHAIDVSDVETVVLDEADEMLNMGFYKDVRHIIDLMKHRKSLSMF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SATIS + + YQ +A V++ I +L D+ I+ G K Sbjct: 183 SATISREVLDIGWLYQHNAAEVSVQPVEDSSPKIAQYKLLTTGRDKLADAAQIIISEGYK 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++FC+T+ + LA F V L G+LSQ ER+ + + G V +ATDVAA Sbjct: 243 RVMIFCNTKYNTGMLANQLARLNFNVDCLHGDLSQAERNRIMTRFKAGEIAVLVATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 RGID+ D++ VI+ ++ E+ HR GRTGRA ++G S + Q+R ++L R Sbjct: 303 RGIDVSDVDAVINYDVPEENEHYTHRIGRTGRARKEGASYLFYTKEEQKRVDQLLR 358 >gi|317485296|ref|ZP_07944176.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6] gi|316923422|gb|EFV44628.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6] Length = 550 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 209/375 (55%), Gaps = 9/375 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++PQ++ A ++ G+ +L VQ L L +D++V ++TGSGKT + L L + Sbjct: 50 DLPQLLQTACAKAGWNSLMPVQSRALPYLLEGRDLMVQSRTGSGKTGTYLLPLMA----- 104 Query: 66 NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 R +PA A AL + PTRELAVQV +E + L+ +G VA GGV ++ L+ G Sbjct: 105 --RLNPAMPAVQALILVPTRELAVQVEQEAKTLFKGSGFTVAAVYGGVGYGKQMDALRQG 162 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RML 183 +VVGTPGR+ DH+ + LN+ H+ A++ DEAD ML +GF D++ I P+ + Sbjct: 163 VSVVVGTPGRVLDHLLRRTLNLDHISALIFDEADRMLSIGFYPDMKEIQRYLPETSIHAM 222 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT P + LA + D +++++ +++ + ++D ++ IL Sbjct: 223 LFSATYPPHVLKLAGEFLTDPQMLSLSTTQIHVAEVQHLYCECKSMEKDRTLIKILEVEN 282 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +AI+FC+T+A+V T VL F LS +LSQ R + L +R G R +ATDV Sbjct: 283 PASAIIFCNTKATVHFVTAVLQGFGFNADELSADLSQSRREDVLSRLRKGTIRFLVATDV 342 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P+L V E + E+ +HR+GRTGRAG G+ + ++ + +R+ + Sbjct: 343 AARGIDIPELSHVFLYEPPDDRESYIHRAGRTGRAGAAGVVISLVDIMEKMELQRIAKYF 402 Query: 364 NVSVVWEPAPSVEAI 378 V + AP+ E + Sbjct: 403 KVPLTQHMAPTDEEV 417 >gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307] gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307] Length = 560 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 206/369 (55%), Gaps = 7/369 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + EAL++ GY + +Q A + + +D+L AQTG+GKT AF L L + + E Sbjct: 22 LPDSLLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLLARINLE- 80 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 A P L +APTRELA+QV + + G+ V GG + L+ G Sbjct: 81 -----ARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRRGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ DH+R LN+S L+ +VLDEADEML +GF DD++++L+ P +R++++F Sbjct: 136 HVVVGTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQLPSERQVVLF 195 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P I +++ + ++ V I ++ S I R +L+ + +A++ +L HG Sbjct: 196 SATMPPEIKRISQQHLQNPAEVIIRTQKADASRIRQRHILLPHQQKLSALLRVLEAHGPG 255 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+A + L L+G++ Q R ++ ++ GR V +ATDVAA Sbjct: 256 GVIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVLVATDVAA 315 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + LV++ + + E +HR GRTGRAGR+G ++ + +R L R Sbjct: 316 RGLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAGRQGDAILFLSYRERRLLHSLERAVGS 375 Query: 366 SVVWEPAPS 374 S+ PS Sbjct: 376 SIDAMDVPS 384 >gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans ATCC 23270] Length = 418 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 212/380 (55%), Gaps = 9/380 (2%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE++ + I A +ERGY + T +QE + + D+L AQTG+GKT AF + + Sbjct: 1 MSSFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPI 60 Query: 59 ASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L S A + + AL + PTRELA QV ++ + V IGGV ++ + Sbjct: 61 LHKLAVTAGSASRAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQ 120 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 + L+ I+V TPGRL DHI+ + +++SH++ +VLDEAD MLD+GF DI IL P Sbjct: 121 MQKLRRSVDILVATPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLP 180 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 KKR+ L+FSAT SP I LA + V +A+ N ++ R V + + + Sbjct: 181 KKRQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAVDQDRKRELLSH 240 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ H +VF T+ R + L++ Q +A+ G+ SQ R+ AL ++G+ +V Sbjct: 241 LIEEHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQV 300 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR-- 355 +ATD+AARGID+ +L V++ EL PE+ +HR GRTGRAG G +V ++ +++ Sbjct: 301 LVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQ 360 Query: 356 -AERLFREA---NVSVVWEP 371 E+L R + + + +EP Sbjct: 361 DVEKLLRRSFDREIVIGFEP 380 >gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3] gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3] Length = 646 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 162/518 (31%), Positives = 261/518 (50%), Gaps = 35/518 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L +D L AQTG+GKT AF L L + + + Sbjct: 20 ALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L GAHIVVGTP Sbjct: 75 -PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQMRALSRGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L++ VLDEADEML +GF DD+ +IL+ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + T+ Y ++ +V++A N + +V ++D A+ +L +IVF Sbjct: 194 VKTIVDRYLRNPAKVDVAGTNHTVDKVAQNFWVVKGVEKDEAMSRLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSTMEEIQL 373 Query: 370 EPAPSVEAIR----------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 V A R E++++ + + ++Q + +DV D +AA Sbjct: 374 PLRDQVAAARVAKLGAELETEKESKALENFAGLITTLQ----ESLDV-----DAATLAAM 424 Query: 420 FLRIH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGS 475 L+ ++ L E P+ RD+ R R G RD F W + L VG Sbjct: 425 LLKRQQGKSPLFYIGE-DPMIAAIERDKNRRKERRENRDNGGRD-FNTQDWDTYQLQVGR 482 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +Q + + ++ L G+ + SIGAI++ T+V++ Sbjct: 483 EQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQL 520 >gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13] Length = 507 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 200/344 (58%), Gaps = 9/344 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +++ G+ T +Q + L KDV+ AQTG+GKT+AFGL L + N+ Sbjct: 13 IMKSIDRMGFEEATPIQSETIPVALTGKDVIGQAQTGTGKTIAFGLPLLENVDVTNESIQ 72 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + IAPTRELA+QV E+ + Y K V++V GG + R+ R L+ HIVV Sbjct: 73 ------GIVIAPTRELAIQVAEEIYKASYHKRARVLSV-FGGQDISRQIRSLKKNPHIVV 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DHI K L + ++ VVLDEADEML++GF +DIE IL +P+K++ L+FSAT+ Sbjct: 126 GTPGRLLDHINRKTLRLQNVNTVVLDEADEMLNMGFIEDIEKILAETPEKKQTLLFSATM 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +A+ + + V V + ++ S+I V V + + + +L + AI+ Sbjct: 186 PAPIRAIAERFMSEPVNVKVQAKELTISNIQQFYVEVPEKKKFDTLTRLLDIQSPELAII 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V + L + + G+LSQ +R + L+ ++G V +ATDVAARG+D Sbjct: 246 FGRTKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGLD 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + + V + ++ +PE+ +HR GRTGRAG+ G+++ FV P+ + Sbjct: 306 ISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAITFVSPREV 349 >gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella elegans ATCC 700633] gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella elegans ATCC 700633] Length = 509 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/442 (33%), Positives = 234/442 (52%), Gaps = 21/442 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E++ + G+ T +Q + L KDV+ AQTG+GKT +FGL + + N + Sbjct: 14 ESIEKMGFEEATPIQSQTIPLALAGKDVIGQAQTGTGKTASFGLPMLQKINLRNRKVQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L IAPTRELA+Q EL L + V GG + R+ R L++ HIVVGTP Sbjct: 72 ----GLVIAPTRELAIQTQEELYRLGKDKKIHVQAVYGGADIGRQIRQLKDQPHIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI K L + +++ +VLDEADEML++GF +DIE I+ P+ R+ L+FSAT+ Sbjct: 128 GRLLDHISRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPENRQTLLFSATMPDD 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + K+ V I S + ID V ++ + + +L + IVF Sbjct: 188 IKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVKCKDFEKFDIMTRLLDVQTPELTIVFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L F+ + G+LSQQ+R + L+ ++ + +ATDVAARG+D+ Sbjct: 248 TKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369 + V + ++ +PE+ +HR GRTGRAG++GMSV FV P M R E L R+ ++ Sbjct: 308 VTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVIEDLTRKRMTAL-- 365 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 P +EAI + I Q + S+ K+ + LL +++ +++AA + +G+ Sbjct: 366 RPPTQMEAIEGQMKSAIEQIDEKMKSVDTRRFKEAISYLLDEYEADELAALLV----SGM 421 Query: 429 CA-----PEEITPVSLVSGRDR 445 P +ITP + R R Sbjct: 422 IKDPTEIPVKITPERPLPSRKR 443 >gi|88860789|ref|ZP_01135426.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas tunicata D2] gi|88817384|gb|EAR27202.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas tunicata D2] Length = 460 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 135/350 (38%), Positives = 197/350 (56%), Gaps = 19/350 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L+ Y ++T +Q L L KDV+ A+TGSGKT AF L L L R Sbjct: 17 ENLTSLEYTSMTPIQAQSLPHILSGKDVIAQAKTGSGKTAAFALGLLENLDVRKYRVQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGV----VVAVCIGGVSVHRERRDLQNGAHIV 128 AL + PTRELA QV +E+ L G+ V+A+C GGV + + L++GAHI+ Sbjct: 75 ----ALVLCPTRELADQVAQEIRKL--ARGIPNVKVLALC-GGVPMGPQIGSLEHGAHII 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+ + L++SH+ +VLDEAD MLD+GF ++ I+D +P+ R+ L FSAT Sbjct: 128 VGTPGRIEDHLSRRTLDLSHVNTLVLDEADRMLDMGFSAALDAIIDQTPRDRQTLFFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGAK 245 I +A +D V+V + S H++++ R + R A+ +L H Sbjct: 188 FPEKIQQIASRTMRDPVKVEVESS---HNNVNIRQYFYKVEQNKQRTTALRLLLLKHEPN 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VFC+TR LA F V+AL GEL Q+ER L + + +ATDVAA Sbjct: 245 SCVVFCNTRVETQAVADELAVSGFSVLALHGELEQRERDQTLVRFANKSISILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 RG+D+ +L++VI+ ++ +PE +HR GRTGRAG KG + + N R Sbjct: 305 RGLDINELDMVINYHITQDPEVHVHRIGRTGRAGSKGTAHSLFTDNESYR 354 >gi|332969729|gb|EGK08743.1| ATP-dependent RNA helicase RhlE [Kingella kingae ATCC 23330] Length = 484 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 198/348 (56%), Gaps = 2/348 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEND 67 Q I ALSE+GY T +Q A + L D+L +AQTG+GKT AF L +L N Sbjct: 39 QEIVSALSEQGYETPTPIQLAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYANA 98 Query: 68 RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 SPA P+ L + PTRELA Q+ + + + V GGVS+ ++ DL+ G Sbjct: 99 STSPAMHPMRMLVLTPTRELADQIDQNTKSYIKNLPLRHTVLFGGVSMDKQTADLRAGCE 158 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF D+I I+ PK R+ L+FS Sbjct: 159 IVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFVDEIRQIMRLLPKSRQTLLFS 218 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT +P I LA+++ + +A++N +++++ + V + + ++ Sbjct: 219 ATFAPDIRKLAQDFMHLPETIEVAAQNTTNANVEQHVIAVDAHRKKELLERLIVDLNMPQ 278 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVFC T+ S + + L A+ G+ SQQ R L + G RV +ATDVAAR Sbjct: 279 VIVFCKTKQSAEQVARDLLRRGLSANAIHGDKSQQTRLEVLSQFKSGELRVLVATDVAAR 338 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 G+D+ +L VI+ EL E+ +HR GRTGRAG +G+++ ++ + Q+ Sbjct: 339 GLDIAELPFVINYELPVQAEDYVHRIGRTGRAGAEGVAISMMDETEQK 386 >gi|315125225|ref|YP_004067228.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas sp. SM9913] gi|315013738|gb|ADT67076.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas sp. SM9913] Length = 466 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 203/369 (55%), Gaps = 7/369 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + + LS GY +T VQ L P L KD++ A+TGSGKT AF L + + L + Sbjct: 15 LPSGLVDNLSTLGYTQMTPVQAQSLPPVLSGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 74 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 R +L + PTRELA QV E+ L + + GGVS+ + L++GA Sbjct: 75 FRIQ------SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 128 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DHIR L + ++ +VLDEAD+MLD+GF+D ++ I++ P R+ L+F Sbjct: 129 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIPTNRQTLLF 188 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT +I +AK + + + + + + Y + R + +L + Sbjct: 189 SATFPKSIEAIAKRVLSNPEMIKVEEQQEKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VFC+T+ + LA+ F VAL G+L Q++R L + A + +ATDVAA Sbjct: 249 SCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASILVATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ D+++VI+ L+ +P+ +HR GRTGRAG+KG++ + Q + ++ Sbjct: 309 RGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSIYGDAEQFKVAQIGDHYER 368 Query: 366 SVVWEPAPS 374 EP PS Sbjct: 369 DFTPEPMPS 377 >gi|282890698|ref|ZP_06299218.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499291|gb|EFB41590.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 538 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 207/376 (55%), Gaps = 7/376 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E + + +QE ++ L +DV+ AQTG+GKT AFGL +R A Sbjct: 62 KAIAEAKFTQPSPIQEKVIPIILNGQDVVAQAQTGTGKTAAFGLPSL-------NRLDKA 114 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + L I PTRELAVQV EL L G+ GG S+ R+ ++ GA +VV TP Sbjct: 115 AGVGLLVITPTRELAVQVSDELYRLGKYCGIRTIAVYGGQSIQRQIDGIERGAQVVVATP 174 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D ++ + L+ VVLDEADEML++GF +DI+ I PK+R+ L+FSAT+ Sbjct: 175 GRLLDLLKSRRLSHFSPPIVVLDEADEMLNMGFLEDIQEIFTFLPKERQTLLFSATMPLP 234 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK + ++ + I + +I ++ S+RD+A+V +L +I+FC Sbjct: 235 IQKLAKTFLREPEFIKITKKETASQNIQQICYVIHESERDDALVRLLDAQEEAKSIIFCR 294 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V R + L + L G++ Q +R + R ++ ATDVAARG+++ D Sbjct: 295 TKKDVDRVSSFLTSRGYGARGLHGDMEQPQRQRVIDGFRQNEFQILAATDVAARGLNVLD 354 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L E+ +HR GRTGRAG KG+++ ++ + +FRE ++ ++ Sbjct: 355 VTHVYNYHLPYETESYVHRIGRTGRAGNKGIAITLLNPREVSGLKHIFREHGGNIEYQSI 414 Query: 373 PSVEAIRERDAQRILQ 388 P+++ ++ + A++ L+ Sbjct: 415 PTLQDVKRKFAEKFLK 430 >gi|238762292|ref|ZP_04623264.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC 33638] gi|238699639|gb|EEP92384.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC 33638] Length = 460 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 143/394 (36%), Positives = 211/394 (53%), Gaps = 18/394 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 19 LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPA 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ V V + + + I+ R +++ L Y+ + +VFC Sbjct: 191 GIEQISARVQRQPVNVEV-DDGDEAPAIEQVFFETTREKRLPLLISALSYYQPASCVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DLELV++ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 310 DLELVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYMQMKLKWT 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 PA V R A +L+ + I G K + Sbjct: 369 PAEQV----SRSANTMLEPEMVTLCIDGGRKAKI 398 >gi|257126351|ref|YP_003164465.1| DEAD/DEAH box helicase [Leptotrichia buccalis C-1013-b] gi|257050290|gb|ACV39474.1| DEAD/DEAH box helicase domain protein [Leptotrichia buccalis C-1013-b] Length = 571 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 149/454 (32%), Positives = 240/454 (52%), Gaps = 15/454 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLV-SAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ALS++G+ + +Q+ ++ L+E+ L+ AQTG+GKT AFG+ + T+ A+ Sbjct: 16 ALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIPILETIDAD------- 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELA QV E+ L + + V GG S+ + + L+ G IVVGTP Sbjct: 69 KTVRALILAPTRELANQVSDEIYSLKGEKDIKVLAVYGGASIENQIKRLKAGVDIVVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I K L ++ L VLDEADEML++GF +DIE IL+ + +++ML FSATI A Sbjct: 129 GRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKMLFFSATIPKA 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +AK + + + + + + + V D+ A+ +L Y IVFC Sbjct: 189 ILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQNFYGIVFCR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T++ V T L + + G+++Q R AL + + + +ATDVAARGID+ + Sbjct: 249 TKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVATDVAARGIDVSN 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 L VI+ + E+ +HR GRTGRAG KG+++ FV P+ + A+ + R + E Sbjct: 309 LTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQ-IKRVTKTDIKRED 367 Query: 372 APSVEAIRE--RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P+VE I E ++A D + +S +++ L+ D ++ A LR Sbjct: 368 IPNVEEILEAKKEALVAYVDEIIKESDFNAYEELAQRLIEGRDARQVLASVLRHVYEDEF 427 Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463 P+ ++ V + + D +R F + GS+D + Sbjct: 428 LPDNYNEIADV--KVKINDKTRLF-IALGSKDGY 458 >gi|238793027|ref|ZP_04636656.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC 29909] gi|238727627|gb|EEQ19152.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC 29909] Length = 667 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 152/434 (35%), Positives = 226/434 (52%), Gaps = 27/434 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AFGL L + AE Sbjct: 21 ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNIKAE------LK 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +P L +APTRELA+QV + L ++ GV V GG + R L+ G IVVGTP Sbjct: 75 SPQVLVLAPTRELAIQVAQALSDFSKHINGVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ LN+S+L +VLDEADEML +GF +D+E IL P + + +FSAT+ A Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATMPDA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAIVFC 251 I + + + KD V I S DI V R N A+V L AI+F Sbjct: 195 IRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYRKNEALVRFLESEDFDAAIIFV 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + AL+G+++Q R L ++DGR + IATDVAARG+D+ Sbjct: 255 RTKNGTLEVAEALESSGYNCAALNGDMNQSLREQTLNRLKDGRLDILIATDVAARGLDVD 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + + R +++ Sbjct: 315 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIERTMKLTIPEVQ 374 Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421 P+ E + ER A ++ Q ++ + + LLAK PE+ +AA L Sbjct: 375 LPNPELLGERRLAQFAAKVGQ------QLESSDLDLYRALLAKLQPEEEFDLETLAAALL 428 Query: 422 RI---HRAGLCAPE 432 ++ R + PE Sbjct: 429 KMAQGERPLILPPE 442 >gi|312892436|ref|ZP_07751930.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM 18603] gi|311295070|gb|EFQ72245.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM 18603] Length = 615 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 163/523 (31%), Positives = 267/523 (51%), Gaps = 31/523 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVS-AQTGSGKTVAFGLALASTLLAENDRF 69 I A+++ G+ N T +QE + L + V AQTG+GKT AFGL L L E + Sbjct: 13 IVNAITDLGFENPTPIQEQSIPVLLTGSNDFVGLAQTGTGKTAAFGLPLLELLDFEQNH- 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + PTREL +Q+ +L+ Y+K + V V GG ++ + R ++ G I Sbjct: 72 -----PQALILCPTRELCLQITNDLKN-YSKNMSNVNVVAVYGGANISDQLRQIKRGVQI 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGR+ D I K +N S + VVLDEADEML++GF++DI+ IL ++P ++ +FSA Sbjct: 126 VVATPGRMLDIINRKAINFSDVNYVVLDEADEMLNMGFQEDIDSILSTTPDDKKTWLFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ + +AK Y D + + +N + +I++ +V D+ A I+ ++ Sbjct: 186 TMPSEVRRIAKKYMTDPFELTMGEKNTGNVNIEHEYYIVRARDKYAAFKRIVDFNPEIFG 245 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVFC T+ + L + + +L G+LSQQ+R ++ R+ ++ IATDVAARG Sbjct: 246 IVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQLLIATDVAARG 305 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 ID+ D+ VI+ L EN HRSGRT RAG+ G+S+ +I + ++ R Sbjct: 306 IDVNDVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSKELGKIRQIERVIGKKF 365 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL---------LAKHDPEKIAA 418 + P+ + E+ I+ + ++Q +E+++ + L K D K A Sbjct: 366 IKGEIPNGFDVCEKQLFAIVHK---VHNVQVNEQQIEQYIPRIMDEFKDLEKEDIIKRFA 422 Query: 419 G--FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476 F R AP+ P+ + R D RA + G G+ D + +++GS Sbjct: 423 SIEFNRFLDYYKNAPDLNAPLDDRAVRGELGD--RAPR-GTGNSD----YTRLFINLGSV 475 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 + L+ +C ++ I+ +++G I V+ +F EV VD Sbjct: 476 DEFNRGDLLGYICNTAKISGRTVGKIDVKGVYSFFEVPKADVD 518 >gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273] gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273] Length = 590 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 165/525 (31%), Positives = 261/525 (49%), Gaps = 28/525 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64 N+ + I AL E GY T +Q + L +DVL AQTG+GKT AF L + S + L+ Sbjct: 16 NLSEPIMRALKEVGYETPTPIQARTIPLMLEGRDVLGQAQTGTGKTAAFALPILSGIDLS 75 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQ 122 D P L +APTRELA+QV YA+ G V GG + R L+ Sbjct: 76 LTD-------PQVLVLAPTRELAIQVAEAFHK-YAEYLKGFHVLPIYGGQDYGGQLRMLK 127 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G H+VVGTPGR+ DH+R LN+ L+ +VLDEADEML +GF DD+E+IL +PK+R++ Sbjct: 128 RGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILGETPKERQV 187 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I +A+ Y V I + I R +V S + + + IL Sbjct: 188 ALFSATMPAPIRRIAQKYLNSPAEVTIEGKTTTVETIRQRYWIVGGSHKLDILTRILEVE 247 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + ++F T+ + L + AL+G++ Q +R + ++DG + IATD Sbjct: 248 PFEGMLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQNQRERTVDQLKDGSLNIVIATD 307 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERL 359 VAARG+D+ + VI+ ++ + E+ +HR GRTGRAGR G ++ FV P +NM E+ Sbjct: 308 VAARGLDVERISHVINYDVPYDTESYVHRIGRTGRAGRSGEAILFVAPREKNMLYAIEKA 367 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415 R+ + PS E I ++ ++ Q D+I ++ ++++ +HD + Sbjct: 368 TRK---RIELMELPSTEIINDKRIEKFKQR--ISDTIAAEDLGFFTRLIEQYCHEHDVSE 422 Query: 416 IAAGFLRIHRAGLCAPEEIT--PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS---SWFS 470 + A P + P V +R R A RD+ G + Sbjct: 423 LEAAAALAAMVQGDTPLLFSAKPEKQVRREERDRPSDEAPFRKKPRRDDMYGDEKREVYR 482 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + VGS+ +A ++ + G++ ++IG I + + VE+ A Sbjct: 483 IEVGSEHGVQAGNILGAIINEIGLDPEAIGRISISDAFSTVELPA 527 >gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58] gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58] Length = 503 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/435 (32%), Positives = 228/435 (52%), Gaps = 29/435 (6%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + A+++ GY T +Q + P L ++D+ AQTG+GKT +F L + + L R Sbjct: 11 QKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRAR 70 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P L + PTRELA QV E + VA+ IGGVS + R L+ GA ++ Sbjct: 71 ---ARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FSAT Sbjct: 128 ICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA-- 244 + P I LA + ++ R+ +A + + R V D + V +++R A Sbjct: 188 MPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAEEAEL 247 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG+ + +A+DVA Sbjct: 248 KNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASDVA 307 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ ++ + + + + Sbjct: 308 ARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIEKLIA 367 Query: 365 VSVVW-------EPAPSVEAIRERDAQRILQDPLF--------------LDSIQGDEKKM 403 + W PAP +E+ +R ++ +++I D + + Sbjct: 368 EKIEWLSGDLSSLPAP-MESFESNSGRRGTKERSGRGRDRNRRDAPASPVENINQDAQSV 426 Query: 404 VDVLLAKHDPEKIAA 418 VD +A H +K+ A Sbjct: 427 VDTDIAAHGEDKVKA 441 >gi|126665223|ref|ZP_01736206.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17] gi|126630593|gb|EBA01208.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17] Length = 504 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 137/375 (36%), Positives = 206/375 (54%), Gaps = 10/375 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ EA++ GY T +Q + L + +L AQTG+GKT AF L L S Sbjct: 13 PAVL-EAVTAVGYETPTPIQAQSIPALLSGRHLLGVAQTGTGKTAAFALPLLS------- 64 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125 R P +AP L +APTRELA+QV +K V GG + + L+ GA Sbjct: 65 RVDPNVNAPQILVLAPTRELAIQVAEAFSTYASKLPNFHVLPIYGGQDFFPQIKGLRRGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H++VGTPGR+ DH+R L + +LKA+VLDEADEML +GF DD+E IL +P + +F Sbjct: 125 HVIVGTPGRMLDHLRKGTLKLDNLKALVLDEADEMLRMGFIDDVEAILSKTPDNCQRALF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P I +A+ Y KDAV V I S +R I + V + +A+ IL Sbjct: 185 SATMPPQIKKVAQTYLKDAVEVRIESASRTVDAISQYVLPVYAERKLDALTRILEVEPFD 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +I+F T+A + LA L+G+L+Q++R ++ ++ G+ + +ATDVAA Sbjct: 245 ASIIFVRTKAETIVLAEKLAARGHAAAPLNGDLNQRQREQTVEDLKRGKKDIVVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+P + VI+ ++ + E +HR GRTGRAGR G ++ ++ + L R N Sbjct: 305 RGLDVPRITHVINYDVPYDTEAYIHRIGRTGRAGRDGKAILLVTPRERSWLRTLERATNA 364 Query: 366 SVVWEPAPSVEAIRE 380 ++ PS A+++ Sbjct: 365 TMEAYELPSPAALQK 379 >gi|162448970|ref|YP_001611337.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56'] gi|161159552|emb|CAN90857.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56'] Length = 624 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/344 (37%), Positives = 191/344 (55%), Gaps = 7/344 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++G L+E GY T +Q + L +D+L A TG+GKT AF L L L + Sbjct: 17 PALLG-VLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLLQRLEIGGE 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P P AL + PTRELA+QV + + GV V GG ++ R L+ G H+ Sbjct: 76 ---PPRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLRALRRGVHV 132 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGR DHI L + ++ VVLDEADEMLD+GF + +E IL ++P R+ ++FSA Sbjct: 133 VVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGARQTVLFSA 192 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGA 244 T+ P I +A + ++ VRV IA E + + A +V + + A+ +L Sbjct: 193 TLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRVLDMEDP 252 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +AI+FC TR V T+ L ++ AL G SQ+ R + R G A + +ATDVA Sbjct: 253 SSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELLVATDVA 312 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARG+D+ + VI+ ++ PE +HR GRTGRAGR+G ++ ++ Sbjct: 313 ARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLV 356 >gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp. JS614] gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614] Length = 589 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 166/570 (29%), Positives = 273/570 (47%), Gaps = 67/570 (11%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL++ GY +++Q A + P L +DV+ AQTG+GKT AF L + S L Sbjct: 27 KALADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPILSRLDLTQ------ 80 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + P AL +APTRELA+QV E A GV V GG + L+ G H+VVGT Sbjct: 81 TTPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGGQGYGVQLSALRRGVHVVVGT 140 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S L+ +VLDEADEML++GF +D+E IL +P + + +FSAT+ Sbjct: 141 PGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILADTPDDKNVALFSATMPA 200 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++K Y D + + + S+I R + V+ + +A+ IL + IVF Sbjct: 201 QIRRISKKYLDDPAEITVKGKTATASNITQRYLTVSYPQKVDALTRILEVENFEGMIVFV 260 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L +A++G+++Q +R + ++ G+ + +ATDVAARG+D+ Sbjct: 261 RTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVATDVAARGLDVE 320 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ ++ E+ +HR GRTGRAGR G ++ + + + + + + Sbjct: 321 RISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHIEKATRQPLTQMQ 380 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P+VE + R F D+I + + +D I A ++R H Sbjct: 381 LPTVEDVNSTRLSR------FDDAITEALSQTQRIDAF------RDIVAHYVREH----D 424 Query: 430 APEEI------------TPVSLVSGRDRFRD--DSRAFKVGGGSRDNFKGS--------- 466 PE TP+ L+ DR + R + G G+R + Sbjct: 425 VPEADVAAALAVVAQGETPL-LLDPADRANELRAPREERAGQGTRRDRHDHGGPGGHGGP 483 Query: 467 --------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512 + + ++VG + K E R ++ + G++RQ G I ++ D + VE Sbjct: 484 PRERRPRGRSDVPMATYRIAVGKRHKVEPRQIVGAIANEGGLSRQDFGHIDIRGDHSLVE 543 Query: 513 VSAD----GVDLLRRTVKLDKGIQLKYLGG 538 + AD D LR T K I+L GG Sbjct: 544 LPADLPAGAWDSLRSTRISGKLIELTRDGG 573 >gi|281490897|ref|YP_003352877.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis KF147] gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus lactis subsp. lactis KF147] Length = 547 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 132/352 (37%), Positives = 196/352 (55%), Gaps = 7/352 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + + I L+E GY T +QE + L +DVL AQTG+GKT AFGL Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + A N A AL IAPTRELAVQ EL G+ V GG S+ ++ + Sbjct: 61 EKIDASN------PAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ GAHIVVGTPGRL D I+ K + + L+ ++LDEADEML++GF +DI FI++ +P+ Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEA 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + K+ + IA++ ID V ++ + + +L Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + AIVF T+ V + L ++ + G+L Q +R L+ + G V + Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ATDVAARG+D+ + V + +++ + E+ +HR GRTGRAG+ G SV + N Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYN 346 >gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] Length = 594 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 180/589 (30%), Positives = 288/589 (48%), Gaps = 41/589 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + E L+ ++ T +Q + L +DVL AQTG+GKT AFGL + + A Sbjct: 15 LPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTAAFGLPALAKIDASV 74 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125 + L + PTRELA+QV LE AK GV VA GG + + L+ G Sbjct: 75 KQTQ------VLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKALKQGT 128 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGRL D + L + LK VLDEADEML++GF +DIE IL + P + +F Sbjct: 129 AIVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTAQRALF 188 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI LAK + KD + + I + R+ + I +A V + A+ +L + Sbjct: 189 SATMPNAIRKLAKTFLKDPLNIQIEAIAREKATIKQKAWKVQGMTKMTALTRLLEVTPYQ 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++F TR ++L + F+ LSG+L+Q +R + +R G + + TDV A Sbjct: 249 RALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEILVGTDVVA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362 RG+D+P++ VI+ +L S+ E+ +HR GRTGRAGR G ++ +++ R ERL Sbjct: 309 RGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRTGEAILFFRAKERHLLRHYERL--- 365 Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVL-----LAKHDPE 414 N V + P+ + + Q++ LQ L ++ D+ K+ +L ++ E Sbjct: 366 TNAPVEFFEVPNANELSKYRQQQLLEKLQASLAPETASADKPKLEKLLGEWLEQSELSAE 425 Query: 415 KIAAGFLRIHRAG-LCAPEEITPV-------SLVSGRDRFRD--DSRAFKVGGGSRDNFK 464 +IA L H +E PV S SGR+ D D R + G R Sbjct: 426 EIALALLAQHNEQRPLFLKEDRPVREARNERSERSGRNERSDRGDKRKPRAERGGRAADV 485 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDL 520 + + VG + A ++ + + ++ + IG I++ + + V++ D + + Sbjct: 486 DFETYKIQVGREHGARPGDIVGAIANEASMDSKYIGQIQLFDNHSLVQLPKGMPKDIMHV 545 Query: 521 LR--RTVKLDKGIQL---KYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564 L+ R + G++L + +P R + G +NS GA +RF Sbjct: 546 LKKARVRQQPMGLELSDEQVKRAPRPP-RDRDARGGPKRNSGKGAARRF 593 >gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase [Sutterella wadsworthensis 3_1_45B] gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase [Sutterella wadsworthensis 3_1_45B] Length = 503 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/371 (37%), Positives = 210/371 (56%), Gaps = 14/371 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I A+ GY T +QE + L DV+ +AQTG+GKT +GL L + +L + N Sbjct: 39 ILSAIERMGYTQPTPIQEKAIPVVLMGGDVMGAAQTGTGKTAGYGLPLIARILPKANTSM 98 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL +APTRELA QV L A T + V GGV + + L+ G I+ Sbjct: 99 SPARHPVRALILAPTRELADQVSDNLVKYCADTPLRAGVVYGGVDIRPQADMLRRGVEIL 158 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH++ + +N+S ++ VVLDEAD MLD+GF DI IL P+ R+ L+FSAT Sbjct: 159 TATPGRLLDHVQQRSVNLSQVEIVVLDEADRMLDMGFLPDISRILQLLPQHRQSLLFSAT 218 Query: 189 ISPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGAK 245 SP I LAK++ KD + +A EN + L A++DR+ + ++++L+ G + Sbjct: 219 FSPEIKKLAKSFLKDNPTVIEVARENSTAETVTQE--LFAVNDREKTDVLIDMLKTRGPE 276 Query: 246 -----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +VF + + + R + L A+ G+ +Q+ER AL+ ++G V +A Sbjct: 277 GTPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDKTQEERQVALEGFKNGAIHVLVA 336 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+ +L VI+ ++ + E+ +HR GRTGRAG KG++ + +R E + Sbjct: 337 TDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGRAGAKGVATMLATPEDKRLVEAI- 395 Query: 361 REANVSVVWEP 371 EA ++P Sbjct: 396 -EALTKQTFKP 405 >gi|116872678|ref|YP_849459.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741556|emb|CAK20680.1| ATP-dependent RNA helicase DbpA family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 470 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/377 (36%), Positives = 212/377 (56%), Gaps = 19/377 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A++E GY T VQ+A++ L +D++ +QTGSGKT AF + +A ++ E Sbjct: 5 NLSDEIKKAITELGYNEATPVQKAVIPIALTGEDIVAKSQTGSGKTAAFAIPIAEQVVWE 64 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P AL I PTRELA+QV E + + A G +++ +L Sbjct: 65 ENK------PQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN 118 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL DHI LN+ + +VLDE DEML +GF D +E IL PKKR+ L F Sbjct: 119 HIVVGTPGRLLDHIEKGTLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKKRQNLFF 178 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L K YQ + + + +ASE + + I + V + ++ + ++L Sbjct: 179 SATMPEEMQDLIKRYQDNPMVIEMASE--KTNPIFH--VEMQTDTKEKTLKDVLITENPD 234 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AI+FC+T+ V +++L + + G L Q++R A+ + G++R IATDVA Sbjct: 235 SAIIFCNTKNQVDELSEMLD---LRTSKIHGGLRQEDRFQAMDEFKSGKSRFLIATDVAG 291 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFRE 362 RGID+ ++ LVI+ +L EN +HR GRTGRAG G ++ FV Q + R E + Sbjct: 292 RGIDVENVSLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTQENPLLRDIEEML-- 349 Query: 363 ANVSVVWEPAPSVEAIR 379 N+S+ + P++ +R Sbjct: 350 -NISIEKKRKPTIIEVR 365 >gi|50119665|ref|YP_048832.1| ATP-dependent RNA helicase DeaD [Pectobacterium atrosepticum SCRI1043] gi|49610191|emb|CAG73633.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 637 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 175/560 (31%), Positives = 268/560 (47%), Gaps = 47/560 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 20 ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLNNLKPE------LK 73 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV ++ GV V GG + R L+ GA IVVGTP Sbjct: 74 APQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGGQRYDVQLRALRGGAQIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + +FSAT+ A Sbjct: 134 GRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQTALFSATMPEA 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + KD V I S DI V ++ A+V L AI+F Sbjct: 194 IRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAIIFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 254 TKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 314 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLAIPEVEL 373 Query: 373 PSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRIHR 425 P+ E + +R A+ + L L+S D M LL K P E +AA L++ + Sbjct: 374 PNAELLGQRRLAKFAAKVQLQLESSDLD---MYRALLTKMQPQEELDIETLAAALLKMAQ 430 Query: 426 AGLCAPEEITPVSLVSGRDRFRD--------------------DSRAFKVGGGSRDNFKG 465 P + P R FRD DSR + G + + Sbjct: 431 GE--RPLILPPEPAFRPRREFRDRDESRSDSRGDRRREPRDARDSREPRDGDRPQRRERR 488 Query: 466 SS----WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517 S + + VG E R ++ + I+ + IG I++ + +E+ D Sbjct: 489 ESGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGDL 548 Query: 518 VDLLRRTVKLDKGIQLKYLG 537 + RT L+K + ++ LG Sbjct: 549 LSHFTRTRILNKPMNMQLLG 568 >gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus Ellin428] gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus Ellin428] Length = 591 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/402 (34%), Positives = 216/402 (53%), Gaps = 10/402 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +A+++ G+ + +Q + L DV+ +QTGSGKT AF + A + N Sbjct: 13 PELL-KAVAKMGFEEASPIQSETIPQLLTGADVVGLSQTGSGKTAAFAIP-AIERVDGNL 70 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AP L + PTRELA+QV E+ L + K GV GG S R+ R L++GA Sbjct: 71 R-----APQVLILCPTRELAMQVAEEVAKLAFFKRGVRELPIYGGQSYDRQLRGLRDGAQ 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++GTPGR+ DH+ K L + + ++LDEAD MLD+GFRDDIE IL +P +R+ + FS Sbjct: 126 IIIGTPGRVMDHLERKTLRLDQVGMIILDEADRMLDMGFRDDIETILGQAPAERQTVFFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ PAI L K Y K+ V V I ++ ID V + + ++ K Sbjct: 186 ATMPPAINQLVKKYTKEPVNVRIQAQEMTVPAIDQSYYEVDRRSKLEVLCRLIDLQDIKY 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+FC+T+ V + L + L G++SQ R + R +ATDVAAR Sbjct: 246 GIIFCATKMMVDELSDHLKARGYSSDKLHGDISQSMRERVVAKFRKRGFEFLVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ D+E+V + +L + E+ +HR GRTGRAGR G +V + + +++ R Sbjct: 306 GLDVDDIEVVFNYDLPQDAEDYVHRIGRTGRAGRSGRAVTFVAGREIWKMQQIIRFTKGK 365 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408 V E PS E + ++ L++ ++++ E K D ++ Sbjct: 366 VRRERVPSAEEVEQKRTSEFLEN--LRETLEKGEYKRQDTVI 405 >gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis Il1403] gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis Il1403] gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis CV56] Length = 547 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 132/352 (37%), Positives = 196/352 (55%), Gaps = 7/352 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + + I L+E GY T +QE + L +DVL AQTG+GKT AFGL Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + A N A AL IAPTRELAVQ EL G+ V GG S+ ++ + Sbjct: 61 EKIDASN------PAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ GAHIVVGTPGRL D I+ K + + L+ ++LDEADEML++GF +DI FI++ +P+ Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEA 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + K+ + IA++ ID V ++ + + +L Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + AIVF T+ V + L ++ + G+L Q +R L+ + G V + Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ATDVAARG+D+ + V + +++ + E+ +HR GRTGRAG+ G SV + N Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYN 346 >gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1] gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1] gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1] gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1] gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 528 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 190/342 (55%), Gaps = 7/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY T +Q + L KDV+ AQTG+GKT AF L + L +N Sbjct: 14 KAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQRLDFDNHNIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL ++PTRELA+Q E+ L V V GG + R+ R+L+ ++VGTP Sbjct: 72 ----ALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNPQVIVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHIR + + H+K +VLDEADEML++GF +DIE I+ P +R+ ++FSAT+ P Sbjct: 128 GRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTMLFSATMPPE 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + K+ V I S+ +D V ++ + + + + IVF Sbjct: 188 IKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPELTIVFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V +K L + + G+LSQQ R+ ++ + G+ + +ATDVAARG+D+ Sbjct: 248 TKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAARGLDVSG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + V + ++ +P++ +HR GRTGRAG KG+S+ FV P M+ Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEME 349 >gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pseudoporcinus SPIN 20026] gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pseudoporcinus SPIN 20026] Length = 538 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 204/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + + AL IAPTRELAVQ EL GV V GG S+ ++ + Sbjct: 61 NKIRTDENIIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P++ Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + K+ V I ++ + +++ V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L F+ + G+L Q +R ++ + + + + Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ ++ V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|73540622|ref|YP_295142.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] Length = 632 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 204/370 (55%), Gaps = 21/370 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------------- 58 ALSE Y N T VQ + L +D+LVS+QTGSGKT AF L Sbjct: 65 ALSELNYNNPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEKPATNRPTE 124 Query: 59 -ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115 A + + R SPA P L + PTRELA+QV E Y + +V A +GG+ Sbjct: 125 PAKRMKGKRPRPSPAQ-PSLLVLTPTRELALQV-TEAAAKYGRNLRRIVCASILGGMPYP 182 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 ++ L I+V TPGRL DHI +++S L +V DEAD MLD+GF DDI+ I+D+ Sbjct: 183 KQLAALSKMPDILVATPGRLLDHISAGRIDLSALDMLVFDEADRMLDMGFADDIDAIVDA 242 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNA 234 +P R+ LMFSAT+ I LA KD R+ IA+ S I+ R +S ++ Sbjct: 243 TPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHFTDDMSHKERL 302 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + ++LR K AIVF +T+ + L++ F AL G+++Q R+ L +R G Sbjct: 303 LDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGARNRTLTALRRGN 362 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 RV +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ ++ N Sbjct: 363 LRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNHNDTF 422 Query: 355 RAERLFREAN 364 + +R+ R N Sbjct: 423 QWKRIERFTN 432 >gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 581 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 10/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + + +SE GY + +Q + L KDVL AQTG+GKT AF L L + + Sbjct: 20 NLPEALTKVVSELGYETPSPIQAQCIPLLLEGKDVLGLAQTGTGKTAAFALPLLANIDIN 79 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 + P LA+APTRELA+QV + YA+ G V GG S + + L+ Sbjct: 80 ------LNQPQVLALAPTRELAIQVAEAFQT-YARHLRGFHVLPIYGGQSYDIQFKQLKR 132 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGR+ DH++ K L++S++K ++LDEADEML +GF DD+E I+ P KR+ Sbjct: 133 GPQVVVGTPGRIMDHLKRKTLDLSNIKTLILDEADEMLRMGFIDDVETIMKEMPDKRQTA 192 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + K Y V I S+ +I+ + +V ++ +A+ +L Sbjct: 193 LFSATMPDQIKRITKRYMNSPTEVKIQSKTSTVENIEQKCWIVRGVNKLDALTRMLETEE 252 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + + L ++ AL+G+++QQ R + ++ G + +ATDV Sbjct: 253 YDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERTIARLKSGGLDILVATDV 312 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+ L LV++ ++ ++ E+ +HR GRTGRAGRKG ++ F P+ Sbjct: 313 AARGLDVERLSLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPR 360 >gi|227327833|ref|ZP_03831857.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 635 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 172/566 (30%), Positives = 269/566 (47%), Gaps = 53/566 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNLKPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV ++ GV V GG + R L+ GA IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRGGAQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAQHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + KD V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 370 Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419 P+ E + +R A ++ Q ++ + M LL K P E +AA Sbjct: 371 VELPNAELLGQRRLAKFAAKVQQ------QLESSDLDMYRALLTKLQPQEELDVETLAAA 424 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRD--------------------DSRAFKVGG-- 457 L++ + P + P + R FRD DSR + G Sbjct: 425 LLKMAQGE--RPLILPPDPVFRPRREFRDRDESRSDSRGDRRREPRDARDSREPRDGDRP 482 Query: 458 --GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-- 513 R + + + VG E R ++ + I+ + IG I++ + +E+ Sbjct: 483 QRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 542 Query: 514 --SADGVDLLRRTVKLDKGIQLKYLG 537 D + RT L+K + ++ +G Sbjct: 543 GMPGDLLSHFTRTRILNKPMNMQLMG 568 >gi|50122015|ref|YP_051182.1| ATP-dependent RNA helicase DbpA [Pectobacterium atrosepticum SCRI1043] gi|49612541|emb|CAG75991.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 460 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 134/343 (39%), Positives = 197/343 (57%), Gaps = 11/343 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY +T VQ A L L DV A+TGSGKT AFG+ L ++ + F+ Sbjct: 19 LNELGYTEMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD--FTTQ-- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV +EL L +A+ ++ +C GG + ++ L + HIVVGTP Sbjct: 75 --ALVLCPTRELADQVSKELRRLARFAQNIKILTLC-GGQPMGQQLDSLVHAPHIVVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R + L + LK +VLDEAD MLD+GF D I+ ++ +P R+ L+FSAT Sbjct: 132 GRIQDHLRKQSLALDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPQE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ R IA ++ + S I+ R R ++ IL ++ + +VFC+ Sbjct: 192 IEQISARVQRQPQRFEIA-DDVEESAIEQRFYETTKDQRLPLLIAILSHYQPASCVVFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L V AL G+L Q++R L + RV +ATDVAARG+D+ + Sbjct: 251 TKRDCQSVFEALEMRGISVSALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKE 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 L LV++ EL+ +PE +HR GRTGRAG +G++V PQ M R Sbjct: 311 LALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNR 353 >gi|260770944|ref|ZP_05879873.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972] gi|260614181|gb|EEX39371.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972] Length = 460 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 209/367 (56%), Gaps = 11/367 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L G+ ++T +Q L L +DV+ +TGSGKT AFGL + L + R Sbjct: 19 LDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQNLHVKRFRVQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +L + PTRELA QV ++ L A + V GG+ + + L++GAHI+VGTPG Sbjct: 75 --SLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ +++S L +VLDEAD ML++GF++ ++ I+ +PK+R+ L+FSAT AI Sbjct: 133 RILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQTLLFSATYPEAI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +A++ +DA+ + +AS + S + RD A+ +L H ++A+VFC+T Sbjct: 193 QEIAQSVTRDALMIKVASTHETSSIRQQFYKVEGTEARDEALATLLLNHQPESAVVFCNT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V L F V+ L G++ Q+ER AL + V +ATDVAARG+D+ +L Sbjct: 253 KREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVATDVAARGLDVDNL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372 + V + ELS +PE +HR GRTGRAG +G+++ F + M R A+ E + +V PA Sbjct: 313 DAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQ---IEEYMDMVISPA 369 Query: 373 PSVEAIR 379 E ++ Sbjct: 370 ELPEPVK 376 >gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 504 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 135/343 (39%), Positives = 204/343 (59%), Gaps = 7/343 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I AL+++GY + T +Q A + L+ +DV+ +AQTG+GKT F L + LLA ++ Sbjct: 27 ILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLLANASNSA 86 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV ++ T + V GG+ + + L+ G IV Sbjct: 87 SPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQTAALRAGVEIV 146 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ K LN+S + +V+DEAD MLD+GF D++ I++ PKKR+ LMFSAT Sbjct: 147 IATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKKRQNLMFSAT 206 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKN 246 S I LA ++ + V + +A N Q +D + V SD + + + +++R K Sbjct: 207 FSGEIKKLASSFLDNPVTIEVARSN-QTADRVTQVVYKVDSDDAKRDIVAHLIRGRQLKQ 265 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF +T+ SR + L + + A+ G+ +Q ER AL+ + G V +ATDVAAR Sbjct: 266 VLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKGGEIDVLVATDVAAR 325 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFV 347 G+D+ DL VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 326 GLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFT 368 >gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245] gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245] Length = 610 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 183/590 (31%), Positives = 288/590 (48%), Gaps = 48/590 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY T +Q + L +DVL AQTG+GKT AF L + S ++ + Sbjct: 38 ALEEVGYEKPTPIQAQTIPLLLEGRDVLGQAQTGTGKTAAFALPVLSNIVLSK------T 91 Query: 74 APLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL + PTRELA+QV R E+L G V GG + R L+ G H+VV Sbjct: 92 EPQALVLTPTRELAIQVAEAFHRYAEYL---KGFHVVPIYGGQDYGTQLRMLKRGVHVVV 148 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+R L++S L+ +VLDEADEML +GF DD+E+ILD +P+ R++ +FSAT+ Sbjct: 149 GTPGRVMDHMRRGSLSLSSLQCLVLDEADEMLRMGFIDDVEWILDQTPESRQVALFSATM 208 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +A+ + K V I ++ I R +V S + + + IL + ++ Sbjct: 209 PAPIRRIAQKHLKSPAEVIIQNKTTTVETIRQRYWIVGGSHKLDVLTRILEFEPFDGILI 268 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + L + AL+G+++Q +R + ++DG + IATDVAARG+D Sbjct: 269 FVRTKTMTLELAEKLQARGYAASALNGDMAQNQRERTVDQLKDGSLSIVIATDVAARGLD 328 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366 + + VI+ ++ S+ E+ +HR GRTGRAGR G ++ FV P +NM E+ R+ Sbjct: 329 VDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAIEKATRK---R 385 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK-IAAGFLRIHR 425 + PS E I ++ + Q D+I ++ + LL ++ E + Sbjct: 386 IELMELPSTEIINDKRVAKFKQR--ITDTIAAEDLEFYTRLLEQYCREHDVTELEAAAAL 443 Query: 426 AGLCAPEEITPVSLVS---------GRDRFRDDSRAFKVGGGSRDNFKGSSW-------F 469 A + E TP+ L S GRDR R+ + G SR + + + Sbjct: 444 ASMFQGE--TPLLLSSKPERPARQEGRDRPDSRDRSERDRGASRSPKRDGLYSDERRESY 501 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA---DGVDLLRRTVK 526 + VGS + ++ + G++ +++G I V + VE+ A + V R V+ Sbjct: 502 RIEVGSTHGVKPGNILGAILNEVGLDPEAVGRITVNDTYSTVELPAGMPNEVFHEMRKVR 561 Query: 527 LDKGIQLKYLGGEKPDFRGY----KSSGFKSKNSQDGATKRFKRFKGASK 572 + G QL+ E+ GY K +G+K K+ F K K Sbjct: 562 V-CGRQLRLTKSEERSQSGYAGTGKRTGYKPKSDSKSEPSYFTGHKKKRK 610 >gi|307728119|ref|YP_003905343.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1003] gi|307582654|gb|ADN56052.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003] Length = 467 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/332 (39%), Positives = 193/332 (58%), Gaps = 8/332 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV +T +Q A L L D++ A+TGSGKT AF LAL + L A N A Sbjct: 24 LTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARN------FA 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ + V GG + + L++GAHIVVGTPG Sbjct: 78 VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGAHIVVGTPG 137 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI ++ PK+R+ L+FSAT I Sbjct: 138 RIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLLFSATYPEGI 197 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V +A E ++ I R V +R +A+ +L ++ + I FC+T Sbjct: 198 VKLSQQFLRNPKEVKLA-ERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 256 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 257 KQQCRDLLEVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 316 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 E VI+ +++ +PE +HR GRTGRA ++G ++ Sbjct: 317 EAVINVDVTPDPEVHVHRIGRTGRADQEGWAL 348 >gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. SG-1] gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. SG-1] Length = 496 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 133/378 (35%), Positives = 214/378 (56%), Gaps = 12/378 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + + E L + T +QE + ++ KDV+ AQTG+GKT+AF L + EN Sbjct: 9 ISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPII-----EN 63 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125 F+ S AL + PTRELA+Q+ E+ L G+ V GG V ++ L+ Sbjct: 64 FDFNQQSIQ-ALIVTPTRELALQITEEVRKLIRHIEGISVLPVYGGQDVEKQLNKLRKNV 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGR+ DHI +++S L ++VLDEAD+ML +GF ++E I+ +PK R+ L+F Sbjct: 123 GIVVGTPGRILDHIGRGTIDLSELNSLVLDEADQMLHIGFLKEVEMIIRETPKTRQTLLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SATI I TLAK + K +++ + ++ +AV V + ++ +++ + Sbjct: 183 SATIPDEIKTLAKKHMKSPEYISVERKQGPAKSVEQKAVFVNDRAKQATLIEMIKEYRPY 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ V++ + LA F L G+LSQ +R ++ RD ++ IATDVAA Sbjct: 243 LAVIFCRTKRRVTKLYEALASEGFMCDELHGDLSQAKREKVMKRFRDAEFQLLIATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ + V + ++ + ++ +HR GRTGRAG KG++V F PQ + AE + +E N Sbjct: 303 RGLDVEGITHVFNYDIPEDADSYVHRIGRTGRAGEKGLAVTFYSPQQKDQLAE-IEKELN 361 Query: 365 VSVVWEPAPSVEAIRERD 382 + + P ++ I +RD Sbjct: 362 IRL---PKQNIGNIIDRD 376 >gi|86145730|ref|ZP_01064059.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222] gi|85836429|gb|EAQ54558.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222] Length = 459 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 204/353 (57%), Gaps = 11/353 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L GY +T +Q L L KDV+ +TGSGKT AFGL + L + Sbjct: 13 PELL-NTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQNLRVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R +L + PTRELA QV +E+ L + V GG+ + + L++GAH Sbjct: 72 RVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ +++S L +VLDEAD ML++GF+D ++ +++++PK R+ L+FS Sbjct: 126 ILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245 AT I ++A + V + S HS I V ++ RD+A+ +L +H + Sbjct: 186 ATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHHQPE 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +A+VFC+T+ V L+ F V+ L G++ Q+ER AL + + +ATDVAA Sbjct: 245 SAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357 RG+D+ +L+ V + ELS +PE +HR GRTGRAG KG+++ F + M R A+ Sbjct: 305 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQ 357 >gi|227112581|ref|ZP_03826237.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 627 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 153/449 (34%), Positives = 231/449 (51%), Gaps = 25/449 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNLKPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV ++ GV V GG + R L+ GA IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRGGAQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + KD V I S DI V +++A+V L AI+ Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNDALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 370 Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419 P+ E + +R A ++ Q ++ + M LLAK P E +AA Sbjct: 371 VELPNAELLGQRRLAKFAAKVQQ------QLESSDLDMYRALLAKLQPQEELDVETLAAA 424 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRD 448 L++ + P + P + R FRD Sbjct: 425 LLKMAQGE--RPLILPPDPVFRPRREFRD 451 >gi|326801263|ref|YP_004319082.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21] gi|326552027|gb|ADZ80412.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21] Length = 597 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 168/529 (31%), Positives = 268/529 (50%), Gaps = 47/529 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+S G+ T +QE + L D + AQTG+GKT AFGL L L FS Sbjct: 16 AISALGFEKPTPIQEQAIPALLTGSSDFVGLAQTGTGKTAAFGLPLLELL-----DFS-Q 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + P AL + PTREL +Q+ +L+ V V GG ++ + R ++ G IVV T Sbjct: 70 NTPQALVLCPTRELCLQITNDLKNFSKNLDNVHVVAVYGGANISDQLRQIRRGVQIVVAT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K ++ S ++ VVLDEADEML++GF++DI IL ++P +++ +FSAT+ Sbjct: 130 PGRMLDIIGRKAIDFSGVRYVVLDEADEMLNMGFQEDINDILSTTPDEKKTWLFSATMPA 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + +AKNY D + + ++N +++ID+ +V D+ A I+ ++ IVFC Sbjct: 190 EVRRIAKNYMTDPFELTVGTKNTGNANIDHEYYIVRPRDKYAAFKRIVDFNPEIFGIVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + + +L G+LSQQ+R ++ R+ ++ IATDVAARGID+ Sbjct: 250 RTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQLLIATDVAARGIDVN 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLFREAN 364 ++ VI+ L EN HRSGRT RAG+ G+S+ ++ + ++R + F +A Sbjct: 310 NVTHVINFSLPDEIENYTHRSGRTARAGKTGVSISLVTSKELGKIRQIERVIGKQFVKAE 369 Query: 365 V--------SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416 + ++ V+A+ D Q P +D K+ DV+ KH Sbjct: 370 IPNGFDVCEKQLFALVHKVKAVEVNDDQIGQYLPRIMDEFSDFSKE--DVI--KHFASLE 425 Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS------ 470 FL + AP+ VS + DSR+ K GG D F + + S Sbjct: 426 FNRFLDYYEN---APD--LNVSAAT-------DSRSEK--GGKADRFGRTGYKSDFTRLF 471 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 +++GS ++ +C ++ I+ +SIG I ++ TF EV D VD Sbjct: 472 INLGSVDDFTRGDMLGYICNNAQISGKSIGKIDLKGVYTFFEVENDVVD 520 >gi|281355042|ref|ZP_06241536.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC BAA-548] gi|281317922|gb|EFB01942.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC BAA-548] Length = 627 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 175/532 (32%), Positives = 268/532 (50%), Gaps = 39/532 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLA 64 + + + EAL +G+ + +Q A+ P L E D++ AQTG+GKT AFG+ + L Sbjct: 12 VSEEVLEALRAKGFEAPSPIQ-ALTIPKLLEGAVDLIGQAQTGTGKTAAFGIPVIE--LC 68 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 E P AL ++PTREL++Q+ EL L K + +A GG + + + L++G Sbjct: 69 EGG----GKKPQALILSPTRELSIQIAEELNSLKGKRKLRIAPFYGGQMIEIQLQRLRDG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +V+GTPGR+ D + L+ S LK VLDEADEMLD+GF +DIE IL ++ +RMLM Sbjct: 125 IDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKRMLM 184 Query: 185 FSATISPAITTLAKNYQK--DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 FSAT+ P I +A+ + + + VR A N + ++ Y V D+ A+ I+ Sbjct: 185 FSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIY--FEVRREDKFEALSRIIDVE 242 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A+VFC TR V + L +V AL G+++Q +R+ + +D + ++ IATD Sbjct: 243 QDLYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILIATD 302 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361 VAARGID+ DL VI+ + E +HR GRTGRAG+ G ++ FV P R+ + R Sbjct: 303 VAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEY-RKLTMIQR 361 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEKIA 417 EA+ + E P I E Q + ++I + + D L+ K A Sbjct: 362 EAHTEIRREELPQGRDIVEMKKQHFSEQ--LSEAISAGQHQEYLDFADELIEKTGNASAA 419 Query: 418 -AGFLRIHRAGLCAPEEITPVSLVS-GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 A L++ G E+ P S V GR R R K S D+ GS+ + VG Sbjct: 420 LAAMLQLRFKG-----ELLPQSYVEIGRKRDR------KTWESSADDH-GSTRLFIGVGK 467 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRR 523 A ++ ++ + I + IG I +FV V+ + +D RR Sbjct: 468 LDGFGAVKMLDLIWEKARIKKYRIGKIDCYDRFSFVNVNFEDAEAIIDAFRR 519 >gi|124002116|ref|ZP_01686970.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134] gi|123992582|gb|EAY31927.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134] Length = 571 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 158/532 (29%), Positives = 266/532 (50%), Gaps = 34/532 (6%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 M+ FE I I +A+ E G+ T +QE + P L E D+L AQTG+GKT AF L Sbjct: 1 MQTFEEIGLRSEILQAVQELGFEKPTPIQEQAI-PYLLTEETDLLAFAQTGTGKTAAFSL 59 Query: 57 ALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 L ++ P S + AL + PTREL +Q+ R+++ + GG S+ Sbjct: 60 PLLESI-------DPDSKQIQALILCPTRELCLQIARDIQSFAKFMKIRTTAVYGGASID 112 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 ++ L+ G HIVVGTPGR D I+ K L + ++ +VLDEADEML++GF+ +++ IL + Sbjct: 113 KQIDALKRGVHIVVGTPGRSLDLIKRKKLKLEQIQWLVLDEADEMLNMGFKQELDAILAT 172 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 +PK+++ L+FSAT+ + +A+ Y ++++ N ++ + +V DR A+ Sbjct: 173 TPKEKQTLLFSATMPQELIRIAEQYMHQPKKISVGQRNSGAKNVSHEFYVVQPRDRYQAL 232 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I + IVFC TR L + + AL G+LSQ +R + + R Sbjct: 233 KRIADINPHIYGIVFCRTRRETKDIANKLIQDGYNADALHGDLSQAQRDHVMGRFRSRHL 292 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP------ 349 ++ +ATDVAARG+D+ ++ VI+ L + E +HRSGRTGRAG+ G+S+ +I Sbjct: 293 QILVATDVAARGLDVDEITHVINFNLPDDLEVYIHRSGRTGRAGKTGVSLLIIGGREAGK 352 Query: 350 -QNMQRRAERLFREANVSVVWEPAPS-----VEAIRERDAQRILQDPLFLDSIQGDEKKM 403 + ++R+ + F + E + ++ ++E + P +L + + + Sbjct: 353 IKTIERKIGKKFDRKQIPTSQEICENRLLSLMDKVKEVNVNEEEIAP-YLPHVYDKLESL 411 Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPE--EITPVSLVSGRDRFRDDSRAFKVGGGSRD 461 L KH ++ F R AP+ T G + R+ R K GG+R Sbjct: 412 SREELIKH---FVSYEFNRFLEYYKNAPDLNAATRRDRDRGDRKERNGDRKDKKRGGNRI 468 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +F S F +++GSK + + L+ + + +G I +Q +F E+ Sbjct: 469 DF---SRFFINLGSKDELNPKNLLSFIDSQPSLKNVEVGKIDIQKSFSFFEI 517 >gi|77359086|ref|YP_338661.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis TAC125] gi|76873997|emb|CAI85218.1| putative ATP-dependent RNA helicase; putative cold-shock protein; could be specific for rRNA folding [Pseudoalteromonas haloplanktis TAC125] Length = 462 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 139/413 (33%), Positives = 224/413 (54%), Gaps = 8/413 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + + LS GY ++T VQ L P L KD++ A+TGSGKT AF L + + L + Sbjct: 11 LPSGLVDNLSTLGYTHMTPVQAQSLPPVLAGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 R +L + PTRELA QV E+ L + + GGVS+ + L++GA Sbjct: 71 FRIQ------SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DHIR L + ++ +VLDEAD+MLD+GF+D ++ I++ P R+ L+F Sbjct: 125 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIERIPTNRQTLLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT AI +AK + V V + E + + Y + R + +L + Sbjct: 185 SATFPRAIEAVAKRVLSNPVMVKVEEEQAKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VFC+T+ + L + F V+L G+L Q++R L + A + +ATDVAA Sbjct: 245 SCVVFCNTKVETQQLCDDLVDEGFSAVSLHGDLEQRDRERTLIHFSNKSASILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ D+++VI+ L+ + + +HR GRTGRAG+KG++ + + + ++ Sbjct: 305 RGLDIDDMDMVINYHLAHDTQTHVHRIGRTGRAGKKGIACSIYGEAEAFKIAQIGDHYER 364 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418 V+ EP PS ++ E+ + L LDS + + + D+L A + IA Sbjct: 365 DVIPEPMPSF-SLLEKPPYKPEMVTLMLDSGKKQKVRAGDILGALTGKDGIAG 416 >gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus iners DSM 13335] gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1] gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 11V1-d] gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 09V1-c] gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 03V1-b] gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 01V1-a] gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN 2503V10-D] gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 3008A-a] gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2062A-h1] gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2052A-d] gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2053A-b] gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus iners ATCC 55195] gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII 143-D] gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII 60-B] gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN 1401G] gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus iners DSM 13335] gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 11V1-d] gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 09V1-c] gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 03V1-b] gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LactinV 01V1-a] gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN 2503V10-D] gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2053A-b] gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2052A-d] gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 2062A-h1] gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF 3008A-a] gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus iners ATCC 55195] gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII 143-D] gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII 60-B] gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN 1401G] Length = 487 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 205/366 (56%), Gaps = 10/366 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 TL + + AL I PTRELA+Q EL L V V GG + R+ R Sbjct: 61 QTLDKKQEGIQ------ALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ +I+VGTPGRL DH++ + +N+SHLK V+LDEADEMLD+GF DIE IL + Sbjct: 115 SLKQVPNILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDIESILTFASND 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 + L+FSAT+ I + + + D V I S+ + ID V + +++ + + ++ Sbjct: 175 HQTLLFSATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFVRLKENEKFDILCRLI 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++VF T+ V T+ + + G+L+Q +R + L+ + G+ + + Sbjct: 235 DVQDPELSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRA 356 ATDVAARG+D+ + V + ++ +P++ +HR GRTGRAG+ GMS+ FV P + + Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTI 354 Query: 357 ERLFRE 362 ERL R+ Sbjct: 355 ERLTRK 360 >gi|254302223|ref|ZP_04969581.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322415|gb|EDK87665.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 529 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 151/507 (29%), Positives = 250/507 (49%), Gaps = 35/507 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + LS++GY + T +Q + L+ +KD++ AQTG+GKT AF L + + F Sbjct: 21 KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VVGT Sbjct: 74 LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ LK +LDEADEML++GF +DIE IL + + +RML FSAT+ Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249 I +AK + K+ + + S R+ + + +++RD A+ I+ I+ Sbjct: 194 EIMKVAKTHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARGID Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370 Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 E P V+ + + RI+ D + +D+ KK+ LL D E I A L++ + Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 + +S V D G + +++G K + L+ Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVE 471 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + + + + I V +FV V Sbjct: 472 FIIKKAKVKQSYIKNAEVYEGFSFVSV 498 >gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase [Streptococcus mutans UA159] gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus mutans UA159] Length = 517 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 206/354 (58%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E ++ + I A+++ G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + N+ AL IAPTRELAVQ EL + V V GG S+ ++ + Sbjct: 61 NKIDVTNNVVQ------ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPET 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ AI + + K+ V IA++ +D + V +++ + + ++ Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L ++ + G+L Q +R L+ ++ + + Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348 >gi|57640241|ref|YP_182719.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1] gi|57158565|dbj|BAD84495.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1] Length = 406 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 203/361 (56%), Gaps = 16/361 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 EA+ +G+ T +Q ++ L E D++ ++TGSGKT AFGL + ++ E+ R Sbjct: 14 EAVERKGFSIPTDIQREVIPLLLSAESDIVGQSKTGSGKTAAFGLPILDSI-DESIR--- 69 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA+QV EL L K + V GG + + R L+ G HIVVGT Sbjct: 70 --EVQALILTPTRELAIQVTDELRSLRGKRRIYVYSVYGGQPIGPQIRALEGGVHIVVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI LN+ ++ VLDEAD MLD+GF++DIE I ++PK++R+LMFSAT+ Sbjct: 128 PGRVLDHINRGTLNLDGVRFFVLDEADRMLDMGFQEDIEAIFRATPKEKRVLMFSATMPM 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-----RYHGAKN 246 + LAK Y ++ V ++ + +++ + R + + IL ++G Sbjct: 188 DVLLLAKKYMRNPEVVIVSRDELVPGEVEQEYIEAVPHRRFDLLTKILSDESNEFYG--- 244 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVFC T+A + L F+ AL+G++SQ R + + ++ +ATDVAAR Sbjct: 245 -IVFCQTKAETRELSMRLRAAGFRAEALNGDMSQPAREKTFNRFKARKTKILVATDVAAR 303 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+P++ VI+ + NPE +HR GRTGR G+KG ++ I RR + ++A V Sbjct: 304 GLDVPEITHVINYSIPMNPEQYIHRIGRTGRMGKKGKAITFIAPGELRRFRYITKQAGVE 363 Query: 367 V 367 V Sbjct: 364 V 364 >gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338] gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338] Length = 526 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 206/354 (58%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + +R + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 NKI--DTNR----NVVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ AI + + ++ V +A++ +D + V D+ + + ++ Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L ++ + G+L Q +R L+ ++ + + Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348 >gi|269138721|ref|YP_003295422.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|267984382|gb|ACY84211.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|304558724|gb|ADM41388.1| ATP-dependent RNA helicase DbpA [Edwardsiella tarda FL6-60] Length = 457 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 203/362 (56%), Gaps = 10/362 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY +T VQ A L L KDV A+TGSGKT AFGL L + + +RF S Sbjct: 18 LNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHI--DANRFITQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV L L Y V+ +C GGV +R L + H++V TP Sbjct: 75 ---LVLCPTRELADQVATALRKLARYMPNIKVLTLC-GGVPFGAQRDSLIHAPHVIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L+ ++LDEAD MLD+GF D ++ ++ +P+KR+ L+FSAT Sbjct: 131 GRLLDHLKKETVSLEALQTLILDEADRMLDMGFADALDEVISWAPEKRQTLLFSATWPAE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +++ Q+D + + I + + ++ R V+ + + +L + + +VFC+ Sbjct: 191 IAAISRRIQRDPLTIEIDTHGELPA-VEQRFYEVSRGGKVGLLQTLLSQYQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L V+AL G++ Q++R L +G +RV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVYDALEGSEQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKA 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 LE+VI+ ELS +PE +HR GRT RAG G+++ + +RA L + W+P Sbjct: 310 LEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLGARLQWQPL 369 Query: 373 PS 374 PS Sbjct: 370 PS 371 >gi|172062287|ref|YP_001809938.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria MC40-6] gi|171994804|gb|ACB65722.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MC40-6] Length = 465 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 200/358 (55%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV++T +Q A L L D++ A+TGSGKT AF LAL + L + RF Sbjct: 22 LTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTRRFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E +S I R VA ++R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA ++G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALKREVEWHP 372 >gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM 44385] gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length = 823 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 170/529 (32%), Positives = 275/529 (51%), Gaps = 39/529 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + G+ + +Q A + + +DV+ AQTG+GKT AF L + S L DR Sbjct: 168 AVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRL----DRSQ--K 221 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL ++PTRELA+QV E+ GV V GG S + L+ GAHIVVGTP Sbjct: 222 KPQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTP 281 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++S LK +VLDEADEML++GF++D+E IL +P+ ++ +FSAT+ + Sbjct: 282 GRVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPAS 341 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L+K Y +D V I S+ R +I + +LV + +A+ IL I+F Sbjct: 342 IRRLSKQYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFAR 401 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L F A++G+++Q +R + +RDGR + +ATDVAARG+D+ Sbjct: 402 TKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVER 461 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE- 370 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P+ +RR R A S + E Sbjct: 462 ISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPR--ERRLLRSIERATKSSIEEM 519 Query: 371 PAPSVEAIRE----RDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPE--KIAAGFL 421 P+V+ + E + AQ I L DP +D +G +++ +H+ IAA Sbjct: 520 QLPTVDEVNETRKAKFAQSITESLADPQ-VDLFRG----LINSYAEEHETPLADIAAALA 574 Query: 422 RIHRAG---LCAPEEITPVSLVSGRDRF----RDDSRAF--KVGGGSRDNF-----KGSS 467 ++G L + I + R D+R+ + G F K + Sbjct: 575 TQSQSGDEFLLKEDTIRRNDRRNDRRGRRNDREPDTRSLNERFSGKEPPRFTDRTGKEMA 634 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + ++VG +Q+ ++ + G+N + G I + + + VE+ AD Sbjct: 635 VYKIAVGKRQQVRPGAIVGAIANEGGLNSRDFGKISIFSEHSLVELPAD 683 >gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase) [Aliivibrio salmonicida LFI1238] gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase) [Aliivibrio salmonicida LFI1238] Length = 641 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 163/526 (30%), Positives = 258/526 (49%), Gaps = 35/526 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL E G+V T +Q + L +D L AQTG+GKT AF L L + + L +++ Sbjct: 20 ALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAFSLPLLNKINLKQHN----- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L GAHIVVGT Sbjct: 75 --PQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSRGAHIVVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D + LN+ + +LDEADEML +GF DD+ +IL+ +P+ + ++FSAT+ P Sbjct: 133 PGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPETAQRILFSATMPP 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + T+ Y +D RV++A N + +V ++D A+ +L +IVF Sbjct: 193 MVKTIVDRYLRDPARVDVAGTNNTVEQVTQNFWIVKGVEKDEAMSRLLETEEIDASIVFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 253 RTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARGLDVP 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N R + R S+V Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMVEIE 372 Query: 372 APSVEAIRERD----AQRILQDPLF--LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 P + + E + D F L++ K+ + L + D IAA L+ + Sbjct: 373 LPHRDQVAEARLAVLGAELAADKEFVALEAFSDLITKLQETL--EVDASTIAAMLLKRQQ 430 Query: 426 AG----LCAPEE-ITPVSLVSGRDRFRDD-----------SRAFKVGGGSRDNFKGSSW- 468 P+ I V R R D R + G R + + Sbjct: 431 GKRPLFYKGPDPMIAAVERSKNRRPERGDRGDRPERGDRPERGDRPDRGERRQYNNDDFD 490 Query: 469 -FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + L VG Q + + ++ L G + +IGAI++ P T+V++ Sbjct: 491 TYQLEVGRDQGVQVKDIVGALANELGFTKGAIGAIKLAPGHTYVQL 536 >gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999] Length = 622 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 144/426 (33%), Positives = 226/426 (53%), Gaps = 17/426 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P I +AL + GY + +Q + L D+L AQTG+GKT AF L + + + E Sbjct: 13 NLPSEILQALEKVGYETPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDVE 72 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 S P L +APTRELA+QV + +YA + V GG S + R L+ Sbjct: 73 E------SFPQLLVLAPTRELAIQVAEAFQ-VYASFSKKIRVLPIYGGQSYDNQIRQLKR 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGR+ DHI+ K L + LK +VLDEADEML +GF DD+E IL SPK+++ Sbjct: 126 GVQVVVGTPGRVIDHIQRKTLKLDRLKFLVLDEADEMLRMGFIDDVELILSHSPKEKQTA 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + + Y + V IAS+ S I R VA + A+ IL Sbjct: 186 LFSATMPGPIKKITERYLHEPKHVKIASKVSTASTIRQRYCQVAGHHKLEALTRILEVEQ 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF T+ + L+ + V L+G++ Q+ R ++ ++ G + IATDV Sbjct: 246 FDGVIVFVRTKTATLELADKLSARGYDVEPLNGDIPQKSRERTVERLKSGSIDILIATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 ARG+D+ + VI+ ++ + E+ +HR GRTGRAGR+G ++ I +R ++ + Sbjct: 306 VARGLDVERVSHVINFDIPYDTESYVHRIGRTGRAGRQGDAILFISHREKRLLFQIEKTT 365 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKH--DPEKIA 417 S+ P PS+ + E R + +++I+ D + +++++ A+ DPE + Sbjct: 366 KQSIEQMPIPSISEMNESRLVRFKES--VVEAIEDDSIQSLIPIIEMIKAETEADPEVLM 423 Query: 418 AGFLRI 423 A +I Sbjct: 424 AALAKI 429 >gi|115359843|ref|YP_776981.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD] gi|115285131|gb|ABI90647.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD] Length = 465 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 200/358 (55%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV++T +Q A L L D++ A+TGSGKT AF LAL + L + RF Sbjct: 22 LTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTRRFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E +S I R VA ++R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA ++G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALKREVEWHP 372 >gi|327399574|ref|YP_004340443.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima DSM 10411] gi|327182203|gb|AEA34384.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411] Length = 526 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 144/417 (34%), Positives = 222/417 (53%), Gaps = 14/417 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I + L ++G+ T +QE ++ L+ KD++ A TG+GKT+AFGL L LL E + Sbjct: 16 ILKTLQKQGFEKPTPIQEKVIPLILQSSKDLVAEAPTGTGKTLAFGLPLID-LLKEKTGY 74 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A + +APTRELA+QV E+ K + GG S+ ++R L+ G IVV Sbjct: 75 VQA-----VILAPTRELAIQVCDEINAFKGKKRLKAFPIYGGQSIELQKRRLKEGVDIVV 129 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GT GR+ DHI K LN+S + +LDEADEML++GF DDI+ IL + + M MFSAT+ Sbjct: 130 GTAGRIIDHINRKTLNLSKIDYFILDEADEMLNMGFIDDIKEILTHTNPTKNMFMFSATM 189 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LAK Y K V I S I + V D+ A+ I ++ Sbjct: 190 PEEIKRLAKQYMKKPEFVRIEKSKMLTSQIYFE---VKEQDKFEALCRIRDAVEDFYGLI 246 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ L + + A+ G+LSQ +R L+ RD + + +ATDVAARGID Sbjct: 247 FCKTKVDAQNVANKLIDRGYYADAIHGDLSQDKRERILKRFRDKKINMLVATDVAARGID 306 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + L VI+ + + E+ +HR GRTGRA +KG+++ + + R+ + + A + Sbjct: 307 IDGLTHVINYSMPQDAESYIHRIGRTGRAQKKGIAITFVSPSEYRKLRLIQKLAKAEIKK 366 Query: 370 EPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 E PS++ ++ ++ ++D + L+ GD M + LL ++D E I A L++ Sbjct: 367 EKLPSIQQAIEYKKLSVKKAIED-VELNKNDGDYLTMAEELLGQNDAELIIAKLLKL 422 >gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577] gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577] gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 502 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 183/340 (53%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S G+ T +Q + L +DV+ AQTG+GKT AF L + L N Sbjct: 15 AISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPILQHLDFNNPNVQ--- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL I+PTRELA+Q E+ L V V GG + R+ L++ I+VGTPG Sbjct: 72 ---ALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLKSHPQIIVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L + H+K +VLDEADEML++GF DDIE I+ +P R+ L+FSAT+ P I Sbjct: 129 RILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQTLLFSATMPPQI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + KD +V I ++ ID V V ++ + + + IVFC T Sbjct: 189 KRVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V +K L + L G+L+Q R+ + + G+ + +ATDVAARGID+ + Sbjct: 249 KRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILVATDVAARGIDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +P+ +HR GRTGRAG+ G+S+ F P M Sbjct: 309 THVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEM 348 >gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I] gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I] Length = 497 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 155/486 (31%), Positives = 242/486 (49%), Gaps = 31/486 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A+ E G+ T +QE + + KD++ A+TG+GKT AFG+ + + Sbjct: 8 NLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMVEAI--- 64 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 P S + L + PTRELAVQV EL + G+ GG + + L+ Sbjct: 65 ----RPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKALEEL 120 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVVGTPGRL +H+R + + S ++ VLDEAD+MLD+GF D+ E IL P++R+ L+ Sbjct: 121 PHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLL 180 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+SP + LA+ Y KD + E + + + A+ +L Sbjct: 181 FSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQEKP 240 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF +TR V K L E + + L G+L Q +R N L + G + +ATDVA Sbjct: 241 ELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATDVA 300 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAERLFREA 363 ARG+D+ + V + ++ +P++ +HR GRTGRAG G + FV P++ + E + + Sbjct: 301 ARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKD-KTALEAIEQAI 359 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--------EKKMVDVLLAKHDPEK 415 + + +PAP E++ + + ++ I+G+ + + LL DP Sbjct: 360 DHQITSKPAPGGAESTEKNIEAV------IEKIRGEIEIRDLSFYRDYAESLLNSGDPAT 413 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK-VGGGSRDNFKGSSWFSLSVG 474 I A LRI L EE + L + D +A K G G+ KGS +S G Sbjct: 414 ILAAALRI----LSKAEEKPQIRLTEIPEPVAPDRKAEKGHGKGTGHPKKGS--YSKGYG 467 Query: 475 SKQKAE 480 K + + Sbjct: 468 HKDEGD 473 >gi|269137769|ref|YP_003294469.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202] gi|267983429|gb|ACY83258.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202] Length = 634 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 171/557 (30%), Positives = 272/557 (48%), Gaps = 43/557 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q A + L +DVL AQTGSGKT AF L L + + Sbjct: 17 IIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNI-------D 69 Query: 71 PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AP L +APTRELAVQV + ++ G+ V GG + R L+ G IV Sbjct: 70 PSLKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLRALRQGPQIV 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL DH++ L+++ L+ +VLDEADEML +GF +D+E I+ P + + +FSAT Sbjct: 130 VGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI + + + + V I S DI V ++ A+V L AI Sbjct: 190 MPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFLEAEDFDAAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 250 IFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 310 DVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIERTMKLTIP 369 Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418 P+ E + R A R+ Q L+S D+ + LLAK P E +AA Sbjct: 370 EVELPNAELLSTRRLAKFAARVQQQ---LESSDLDQYR---ALLAKLQPEDEQDMETLAA 423 Query: 419 GFLRI---HRAGLCAPEEIT--------PVSLVSGRDRFRDDSRAFKVGGGSRDNFK--- 464 L++ R + P+ + G DRF R + G R + Sbjct: 424 ALLKMAQGERPLILPPDPVVERRPRREFRERDERGGDRFARRERDERGGDRPRRERREVG 483 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDL 520 + + VG E R ++ + I+ + IG IR+ + +E+ D + Sbjct: 484 DMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGDLLTH 543 Query: 521 LRRTVKLDKGIQLKYLG 537 RT L+K + ++ +G Sbjct: 544 FTRTRILNKPMNMQLIG 560 >gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii ATCC 8290] gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii ATCC 8290] Length = 502 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 183/340 (53%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S G+ T +Q + L +DV+ AQTG+GKT AF L + L N Sbjct: 15 AISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPILQHLDFNNPNVQ--- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL I+PTRELA+Q E+ L V V GG + R+ L++ I+VGTPG Sbjct: 72 ---ALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLKSHPQIIVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L + H+K +VLDEADEML++GF DDIE I+ +P R+ L+FSAT+ P I Sbjct: 129 RILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQTLLFSATMPPQI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + KD +V I ++ ID V V ++ + + + IVFC T Sbjct: 189 KRVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V +K L + L G+L+Q R+ + + G+ + +ATDVAARGID+ + Sbjct: 249 KRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILVATDVAARGIDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +P+ +HR GRTGRAG+ G+S+ F P M Sbjct: 309 THVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEM 348 >gi|313609131|gb|EFR84825.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL F2-208] Length = 470 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 205/369 (55%), Gaps = 13/369 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T VQ+A++ L +D++ +QTGSGKT AF + +A + E ++ Sbjct: 10 IKRAINELGYTEATPVQKAVIPVALIGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELA+QV E + V A G +++ +L HIVVG Sbjct: 68 ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PK+R+ L FSAT+ Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ D + + +ASE + + I + V + +++ + ++L +AI+F Sbjct: 184 EEMQDLIKRYQDDPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIF 239 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T +L + + G L Q++R A+ + G++R IATDVA RGID+ Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ LVI+ +L EN +HR GRTGRAG+ G ++ + N + NV++ + Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLNVTIEKK 356 Query: 371 PAPSVEAIR 379 P+V ++ Sbjct: 357 RKPTVIEVK 365 >gi|218676922|ref|YP_002395741.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus LGP32] gi|218325190|emb|CAV27104.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 468 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 204/353 (57%), Gaps = 11/353 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L GY +T +Q L L KDV+ +TGSGKT AFGL + L + Sbjct: 22 PELL-NTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQNLRVKRF 80 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R +L + PTRELA QV +E+ L + V GG+ + + L++GAH Sbjct: 81 RVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAH 134 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ +++S L +VLDEAD ML++GF+D ++ +++++PK R+ L+FS Sbjct: 135 ILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLFS 194 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245 AT I ++A + V + S HS I V ++ RD+A+ +L +H + Sbjct: 195 ATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHHQPE 253 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +A+VFC+T+ V L+ F V+ L G++ Q+ER AL + + +ATDVAA Sbjct: 254 SAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAA 313 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357 RG+D+ +L+ V + ELS +PE +HR GRTGRAG KG+++ F + M R A+ Sbjct: 314 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQ 366 >gi|170696968|ref|ZP_02888064.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] gi|170138142|gb|EDT06374.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] Length = 465 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 200/358 (55%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV++T +Q A L L D++ A+TGSGKT AF LAL + L + RF Sbjct: 22 LTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTRRFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E +S I R VA ++R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA ++G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALKRDVEWHP 372 >gi|264680431|ref|YP_003280341.1| hypothetical protein CtCNB1_4299 [Comamonas testosteroni CNB-2] gi|262210947|gb|ACY35045.1| hypothetical conserved protein [Comamonas testosteroni CNB-2] Length = 469 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 137/360 (38%), Positives = 198/360 (55%), Gaps = 24/360 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73 L + GY +T +Q A L L+ KD++ A TGSGKT AFGL + DR +P Sbjct: 29 LQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMV-------DRLNPRWF 81 Query: 74 APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL + PTRELA QV E+ L A+ + V GGV + L+NGAHIVVGTP Sbjct: 82 AVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLENGAHIVVGTP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L+I +LK +VLDEAD MLD+GF DIE ++ P R+ L+FSAT Sbjct: 142 GRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTLLFSATYPDG 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + +D V +A+ QHS I R V ++ + + +L + +++I F Sbjct: 202 IASLASRFMRDPQTVKVAT---QHSAGKIAQRWYEVGTREKVSTVAKLLAHFRPESSIAF 258 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ L F +AL GEL Q+ER L + V +ATDVAARG+D+ Sbjct: 259 CNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAARGLDI 318 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----------QNMQRRAERLF 360 DL VI+ +++ +PE +HR GRTGR +G+++ ++ + +Q RA + F Sbjct: 319 ADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIEQLQGRASQFF 378 >gi|238783457|ref|ZP_04627480.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970] gi|238715702|gb|EEQ07691.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970] Length = 511 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 142/394 (36%), Positives = 213/394 (54%), Gaps = 18/394 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 70 LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 122 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 123 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 181 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 182 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPA 241 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ V V + + + I+ R ++++L ++ +A+VFC Sbjct: 242 GIEQISARVQRQPVNVEV-DDGDEAPAIEQLFFETTREKRLPLLISVLSHYQPASAVVFC 300 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 301 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 360 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DLELV++ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 361 DLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQIKLKWT 419 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 PA + R A +L+ + I G K + Sbjct: 420 PADQL----SRSANTMLEPEMVTLCIDGGRKAKI 449 >gi|318606043|emb|CBY27541.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp. palearctica Y11] Length = 460 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 142/394 (36%), Positives = 212/394 (53%), Gaps = 18/394 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 19 LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPA 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ V V + + + I+ R ++++L ++ + +VFC Sbjct: 191 GIEQISARVQRQPVNVEV-DDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPASCVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DLELV++ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 310 DLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQMKLKWT 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 PA V R A +L+ + I G K + Sbjct: 369 PAEQV----SRSANTMLEPEMVTLCIDGGRKAKI 398 >gi|163750898|ref|ZP_02158131.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99] gi|161329322|gb|EDQ00319.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99] Length = 458 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 132/339 (38%), Positives = 200/339 (58%), Gaps = 8/339 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I + L GY ++T++Q L L +DV+ +TGSGKT AFGL L + L + Sbjct: 10 PELI-DNLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNKL--DVK 66 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF S L + PTRELA QV +E+ L + V GGV + + L++GAH Sbjct: 67 RFCIQS----LVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAH 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ + LN+ ++ +VLDEAD ML++GF D+++I+ P++R+ L+FS Sbjct: 123 IIVGTPGRIIDHLSRELLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQTLLFS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I +A+ + V V +AS + S + + + DR A+ +L H + Sbjct: 183 ATFPKQIQKVAEQIMFEPVMVKVASTHDSSSIEQHFYQIDSNKDRPKALRLLLLQHRPDS 242 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VFC+T+ LA F VVAL G+L Q++R L + A + +ATDVAAR Sbjct: 243 AVVFCNTKRETKEVAATLASDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAAR 302 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+D+ L++VI+ EL+ + E +HR GRTGRAG KGM++ Sbjct: 303 GLDIEALDMVINYELAFDTEVHIHRIGRTGRAGSKGMAL 341 >gi|47097038|ref|ZP_00234610.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a F6854] gi|254828606|ref|ZP_05233293.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165] gi|254898593|ref|ZP_05258517.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J0161] gi|254911917|ref|ZP_05261929.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818] gi|254936243|ref|ZP_05267940.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900] gi|47014573|gb|EAL05534.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a F6854] gi|258601004|gb|EEW14329.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165] gi|258608833|gb|EEW21441.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900] gi|293589878|gb|EFF98212.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818] Length = 470 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 190/341 (55%), Gaps = 13/341 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T VQ+A++ L +D++ +QTGSGKT AF + +A + E ++ Sbjct: 10 IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELA+QV E + V A G +++ +L HIVVG Sbjct: 68 ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PK+R+ L FSAT+ Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ D + + +ASE V + +++ + ++L +AI+F Sbjct: 184 EEMQGLIKRYQDDPMVIEMASEKTN----PILHVEIQTDNKEKTLKDVLITENPDSAIIF 239 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T +L + + G L Q++R A+ + G++R IATDVA RGID+ Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ++ LVI+ +L EN +HR GRTGRAG+ G ++ + N Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 337 >gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34] gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34] Length = 526 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 202/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 DKIDTNRNLVQ------ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ AI + + ++ V +A++ +D + V D+ + + ++ Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L ++ + G+L Q +R L+ ++ + + Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348 >gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis NCFD 2020] gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis NCFD 2020] Length = 537 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 202/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + + + AL IAPTRELAVQ EL GV V GG S+ ++ + Sbjct: 61 NKVRTDENIIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPAN 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + K+ V I ++ + +++ V V ++ + + ++ Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKEPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L F+ + G+L Q +R ++ + + + + Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ D+ V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISDVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|294142025|ref|YP_003558003.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea DSS12] gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea DSS12] Length = 427 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 196/349 (56%), Gaps = 10/349 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65 P+++ + L+E GY T +Q + L +D++ AQTGSGKT AF L + + L A+ Sbjct: 20 PELL-QVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFALPILNKLTAQIC 78 Query: 66 ---NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + A P AL + PTRELA+QV T V A+ GGVS+ + + Sbjct: 79 LQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKSALVYGGVSIDAQAQI 138 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G I+V TPGRL DH+R LN++ L+ +V DEAD MLD+GF+D+I+ I+ PK R Sbjct: 139 LAAGVDILVATPGRLLDHLRRGSLNLNQLEFLVFDEADRMLDMGFKDEIDAIVKQLPKTR 198 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT +I L+++ +D ++ + N +ID R V SDR A+V L Sbjct: 199 QTLLFSATFDESIYGLSQSLLRDPKQIEVGERNAAAVEIDQRVYAVD-SDRKLALVTHLI 257 Query: 241 YHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G + ++F + + + L + A G+LSQ R LQ +DG RV + Sbjct: 258 ESGNLQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGAREKVLQGFKDGEVRVLV 317 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ATDVAARGID+ DL VI+ EL E+ +HR GRTGRAG KG+++ ++ Sbjct: 318 ATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNKGLAITLL 366 >gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01] gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01] Length = 673 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 160/527 (30%), Positives = 258/527 (48%), Gaps = 49/527 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L +D L AQTG+GKT AF L L + + + Sbjct: 20 ALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L GAHIVVGTP Sbjct: 75 -PQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQMRALSRGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L++ VLDEADEML +GF DD+ +IL+ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + T+ Y ++ RV++A N + +V ++D A+ +L +IVF Sbjct: 194 VKTIVDRYLRNPARVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR-------- 361 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQL 373 Query: 362 ----EANVSVVWEPAPSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHDPEK 415 E + V + +E +E A + +S++ D + +LL + ++ Sbjct: 374 PQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDAATLAAMLLKR---QQ 430 Query: 416 IAAGFLRIHRAGLCAPEE-------ITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468 + + + A E +GRD GG R NF W Sbjct: 431 GKSPLFYVGEDPMIAAIERDKNRRKDRREDRDNGRD------------GGGR-NFNTQDW 477 Query: 469 --FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + L VG +Q + + ++ L G+ + SIGAI++ T+V++ Sbjct: 478 DTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQL 524 >gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1] gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1] Length = 586 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 169/534 (31%), Positives = 277/534 (51%), Gaps = 37/534 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +ALS+ GY + + +Q A + P L DV+ AQTG+GKT AF + + S + Sbjct: 24 KALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILSKIDLTQ------ 77 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +P AL +APTRELA+QV A G+ V GG S + L+ GAH+VVGT Sbjct: 78 KSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGT 137 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S L +VLDEADEML +GF++D+E IL +P+ +++ +FSAT+ Sbjct: 138 PGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVALFSATMPG 197 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI ++K Y D V + + S+ S+I R V VA + +A+ +L + I+F Sbjct: 198 AIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDFEAMIIFV 257 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L F A++G++ Q +R + ++ G + +ATDVAARG+D+ Sbjct: 258 RTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDVAARGLDVD 317 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G + +FV P +++ + E+ R+ + Sbjct: 318 RISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEKATRQPLAEMQ 377 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI----QGDE----KKMVDVLLAKHDPE--KIAA 418 PSV+ + +AQR+ + F DSI D +KM++ +HD IAA Sbjct: 378 L---PSVDDV---NAQRVSK---FGDSITESLTSDNLALFRKMIEDYEQEHDVPLADIAA 428 Query: 419 GFLRIHRAGLC-APEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---NFKGSSWFSLSVG 474 R G P + R+ +R F G +R + + + ++VG Sbjct: 429 ALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDEGPPTRSRGPEGQELATYRIAVG 488 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRT 524 + + ++ + G+ R G I ++PD + VE+ AD ++ LRRT Sbjct: 489 KRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALRRT 542 >gi|325977801|ref|YP_004287517.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 526 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 202/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I A+ + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 DKIDTNRNLVQ------ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ AI + + ++ V +A++ +D + V D+ + + ++ Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L ++ + G+L Q +R L+ ++ + + Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348 >gi|91200410|emb|CAJ73457.1| strongly similar to ATP-dependent RNA helicase [Candidatus Kuenenia stuttgartiensis] Length = 524 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 200/369 (54%), Gaps = 11/369 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + L E+GY T +Q+ + L KD++ AQTG+GKT AFGL + L ++ Sbjct: 15 KVLKEKGYEEPTPIQQKTIPAILSGTKDIVGQAQTGTGKTAAFGLPVLELLPEKSKNVQ- 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA+QV EL L K + + G S+ + R L+ G IVVGT Sbjct: 74 -----ALVLTPTRELAIQVAEELNSLKGKKRLSIVPIYGRQSMELQLRSLKKGIDIVVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH++ L I + +VLDEADEML++GF DD+ I++++ ++R L+FSAT+ Sbjct: 129 PGRVLDHLKRGTLKIGKISFLVLDEADEMLNMGFIDDVREIMENTGHEKRTLLFSATMPF 188 Query: 192 AITTLAKNYQK--DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +AKNY + D +VN +D Y V A D+ A+ I+ +V Sbjct: 189 EIMQIAKNYMRDFDVQKVNAGQLTVSQTDQIYFEVFAA--DKFEALCRIIDIEKDFYGLV 246 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V L E + AL G++SQ R L + + + IATDVAARG+D Sbjct: 247 FCRTKIDVDAVASHLIERGYDADALHGDISQSLREKILAKFKKRQINILIATDVAARGLD 306 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + +L VI+ L +PE+ +HR GRTGRAG+ G+++ I R+ + + + A + Sbjct: 307 IHNLSHVINYSLPQDPESYVHRIGRTGRAGKGGIAITFITPEEYRKLQFIQKAAKTDIRK 366 Query: 370 EPAPSVEAI 378 E P +E I Sbjct: 367 EKLPKIEDI 375 >gi|237739222|ref|ZP_04569703.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31] gi|229422830|gb|EEO37877.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31] Length = 529 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 151/507 (29%), Positives = 250/507 (49%), Gaps = 34/507 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + LS++GY + T +Q+ + L+ +KD++ AQTG+GKT AF L + + Sbjct: 21 KVLSKKGYESPTPIQKLTIPALLKNDKDIIGQAQTGTGKTAAFSLPIIENFETSDHHIQ- 79 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VVGT Sbjct: 80 -----AIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ LK VLDEADEML++GF +DIE IL + +RML FSAT+ P Sbjct: 135 PGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRMLFFSATMPP 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249 I +AK + K+ + + S R+ + + +++RD A+ I+ I+ Sbjct: 195 EIMKIAKTHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 252 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARGID Sbjct: 253 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 312 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 313 INDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIR 371 Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 E P V+ + + RI+ D + +D+ KK+ LL + E I A L++ + Sbjct: 372 KESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAENIVASLLKLTYS 431 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 + +S V D G + +++G K + L+ Sbjct: 432 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVD 472 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + + + + I V +FV V Sbjct: 473 FIVKKAKVKQAYIKNAEVYDAFSFVSV 499 >gi|332162007|ref|YP_004298584.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666237|gb|ADZ42881.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 142/394 (36%), Positives = 212/394 (53%), Gaps = 18/394 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 19 LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPA 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ V V + + + I+ R ++++L ++ + +VFC Sbjct: 191 GIEQISARVQRQPVNVEV-DDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPASCVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DLELV++ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 310 DLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQMKLKWT 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 PA V R A +L+ + I G K + Sbjct: 369 PAEQV----SRSANTMLEPEMVTLCIDGGRKAKI 398 >gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus antri DSM 16041] gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus antri DSM 16041] Length = 512 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 147/469 (31%), Positives = 234/469 (49%), Gaps = 25/469 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + +A+ GY T +QE + L+ +DV+ AQTG+GKT AFGL + + +N Sbjct: 22 LSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEHVDTDN 81 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 AL I+PTREL +Q EL L V V V GG + R+ + L++ Sbjct: 82 PNIQ------ALIISPTRELVIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKHHPQ 135 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGRL DHI + + H++ +VLDEADEML++GF +DIE I+ +P +R+ L+FS Sbjct: 136 ILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAERQTLLFS 195 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I + + + D V I ++ +D V ++ + + ++ Sbjct: 196 ATMPPEIKRIGEQFMTDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDL 255 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ V +K L + + G+L+Q R+ ++ + G + +ATDVAAR Sbjct: 256 TIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKHGDLDILVATDVAAR 315 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREA 363 G+D+ + V + ++ S+P++ +HR GRTGRAG G S+ FV P M+ E+L R Sbjct: 316 GLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEIEKLTRVR 375 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 + + +P + EA + + A D L K+ + LL HD + A L Sbjct: 376 MLPL--KPPSAEEAFKGQVASAFNDIDELIAQDSTDRYKEAAEQLLESHDATDLVAALLN 433 Query: 423 --IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469 A P +ITP + R GG R ++ G + + Sbjct: 434 NMTKEAASEVPVKITPERPLPRHHR-----------GGKRTDYHGGNHY 471 >gi|123442077|ref|YP_001006060.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089038|emb|CAL11856.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 142/394 (36%), Positives = 212/394 (53%), Gaps = 18/394 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 19 LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPA 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ V V + + + I+ R ++++L ++ + +VFC Sbjct: 191 GIEQISARVQRQPVNVEV-DDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPASCVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DLELV++ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 310 DLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQMKLKWT 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 PA V R A +L+ + I G K + Sbjct: 369 PAEQV----SRSANTLLEPEMVTLCIDGGRKAKI 398 >gi|187922064|ref|YP_001893706.1| ATP-dependent RNA helicase DbpA [Burkholderia phytofirmans PsJN] gi|187713258|gb|ACD14482.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans PsJN] Length = 467 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 200/364 (54%), Gaps = 8/364 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P L++ GYV +T +Q A L L D++ A+TGSGKT AF LAL + L A N Sbjct: 16 LPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARN 75 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 A A+ + PTRELA QV +E+ L A+ + V GG + + L++GA Sbjct: 76 ------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L + L +VLDEAD MLD+GF DDI ++ PK+R+ L+F Sbjct: 130 HIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLLF 189 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I L++ + ++ V +A E ++ I R V R +A+ +L ++ Sbjct: 190 SATYPEGIVKLSQQFLRNPKEVKLA-ERHDNTKIRQRFYEVTEDGRLHAVGLLLNHYRPV 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + + FC+T+ VL F +AL GEL Q+ER L + V +ATDVAA Sbjct: 249 STLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ LE VI+ +++ +PE +HR GRTGRA ++G ++ + N R L + Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLEQAQKR 368 Query: 366 SVVW 369 V W Sbjct: 369 EVEW 372 >gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC 33030] gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC 33030] Length = 675 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 211/357 (59%), Gaps = 13/357 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + +A+ G+ + + +Q + + +DV+ AQTG+GKT AF L + LA Sbjct: 77 LPAPVLDAIKRVGFESPSQIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPI----LARI 132 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 D + A P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 133 D--TSARYPQALILAPTRELALQVSDSFQSFADHLGGISVLPIYGGQAYGIQLSGLRRGA 190 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH+ L+IS+L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +F Sbjct: 191 QIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALF 250 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI ++ +Y D V + ++ R +++I R + A ++ +AI +L Sbjct: 251 SATMPNAIRRISHDYLNDPEEVTVKAKTRTNTNITQRYLFTAHRNKLDAITRVLEVTEFD 310 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF T+ + L F A++G+++QQ+R + M+RDGR + +ATDVAA Sbjct: 311 AMIVFVRTKQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILVATDVAA 370 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G + +FV P R R+ R Sbjct: 371 RGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEALLFVTP-----RERRMLR 422 >gi|149910407|ref|ZP_01899049.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36] gi|149806555|gb|EDM66524.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 203/344 (59%), Gaps = 6/344 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I ++ G+ T VQEA + L D++ ++QTGSGKT+A+GL + +L + Sbjct: 10 PRLIS-SIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPILQRMLKQR- 67 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 RF A A+ +APTRELA+QV ++ L + + IG S + + L+ + Sbjct: 68 RFE-HRAVRAVILAPTRELAIQVHANMKHLGMSLDYQIQLIIGRESFQHQEKLLRKNPEV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFS 186 ++ TPGRL DHIR K +++ HL+ +VLDEAD MLD+GFRDD+ I +S+P KR+ ++FS Sbjct: 127 LIATPGRLLDHIREKSISLEHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKRQTMLFS 186 Query: 187 ATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGA 244 AT+ + + + R+ I N QH I+ R L+ ++ +V++++ Sbjct: 187 ATLEHVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFSDNLTHKEEQLVHLVKSEDY 246 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + ++F +T+ R K+L ++ ++ G++ Q +R L+ R GR V +ATDVA Sbjct: 247 RQLLIFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVGVLVATDVA 306 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARG+D+ L VI+ +L NPE+ +HR+GRTGRAG G+++ ++ Sbjct: 307 ARGLDIRTLSHVINFDLPINPEDFIHRTGRTGRAGATGIAISLV 350 >gi|91781411|ref|YP_556617.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400] gi|91685365|gb|ABE28565.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400] Length = 467 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 135/365 (36%), Positives = 201/365 (55%), Gaps = 8/365 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P L++ GYV +T +Q A L L D++ A+TGSGKT AF LAL + L Sbjct: 15 SLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDVR 74 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124 N A A+ + PTRELA QV +E+ L A+ + V GG + + L++G Sbjct: 75 N------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHG 128 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHIVVGTPGR+ DH+ L + L +VLDEAD MLD+GF DDI ++ PK+R+ L+ Sbjct: 129 AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLL 188 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT I L++ + ++ V +A E ++ I R V +R +A+ +L ++ Sbjct: 189 FSATYPEGIVKLSQQFLRNPKEVKLA-ERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + + FC+T+ VL F +AL GEL Q+ER L + V +ATDVA Sbjct: 248 VSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVA 307 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ LE VI+ +++ +PE +HR GRTGRA ++G ++ + N R L + Sbjct: 308 ARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLEQAQK 367 Query: 365 VSVVW 369 V W Sbjct: 368 RDVEW 372 >gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC 13032] gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum ATCC 13032] Length = 732 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 162/535 (30%), Positives = 272/535 (50%), Gaps = 38/535 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + +A+ + GY + +Q + + +DV+ AQTG+GKT AF L + LA Sbjct: 109 LPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPI----LARI 164 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 D+ +P AL +APTRE A+QV + G + + I GG + + L+ GA Sbjct: 165 DK--SVRSPQALVLAPTREQALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGA 222 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F Sbjct: 223 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALF 282 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L+K Y + + + SE R +++I R + VA ++ +A+ IL + Sbjct: 283 SATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFE 342 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 343 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 402 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 403 RGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 462 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVL--------LAKHDP-EK 415 + P+V+ + D +++ F DSI E K +D+ A P E Sbjct: 463 PLHEMELPTVDQV--NDFRKV----KFADSITKSLEDKQMDLFRTLVKEYSQANDVPLED 516 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG--------------SRD 461 IAA ++G +E+ P R D G RD Sbjct: 517 IAAALATQAQSGDFLLKELPPERRERNDRRRDRDFDDRGGRGRDRDRGDRGDRGSRFDRD 576 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + + + + L+VG +Q ++ L G+N + G I + D T VE+ D Sbjct: 577 D-ENLATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKD 630 >gi|288800406|ref|ZP_06405864.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str. F0039] gi|288332619|gb|EFC71099.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str. F0039] Length = 641 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 213/399 (53%), Gaps = 12/399 (3%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57 MK FE I + I +A+ E G+ + T VQE ++ L E DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEMLGISEEIRQAIEELGFEHPTPVQEEVIPYLLGEGNDVIALAQTGTGKTAAYGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 L + + AL ++PTREL +Q+ L Y K G+ V GG S+ Sbjct: 61 LIQKVNPQQKHTQ------ALILSPTRELCLQISDSLSDFSKYIK-GLTVVPVYGGTSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + + L+ G I+V TPGRL D I + ++ VVLDEADEML++GF + I IL+ Sbjct: 114 TQIKALKKGTQIIVATPGRLIDLIHRGVAKLENVTNVVLDEADEMLNMGFSESINEILEC 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 PK R L+FSAT+S I +A+NY + + + S N +++ +V D+ A+ Sbjct: 174 VPKDRNTLLFSATMSKEIERIARNYLTNHKEIVVGSRNEGAESVNHIYYMVNAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ + AI+FC T+ L + AL G+LSQQ+R +Q R Sbjct: 234 KRIVDYYPSIFAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRKHTT 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+KG S+ ++ + + Sbjct: 294 QFLVATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIMHTRERSK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394 + + + + V P +AI + +++ L D Sbjct: 354 MHAIEKVISKAFVEGEIPDAKAICSKQLYKVMDQILKAD 392 >gi|238918430|ref|YP_002931944.1| ATP-dependent RNA helicase DeaD [Edwardsiella ictaluri 93-146] gi|238867999|gb|ACR67710.1| cold-shock deAd box protein a [Edwardsiella ictaluri 93-146] Length = 634 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 172/557 (30%), Positives = 271/557 (48%), Gaps = 43/557 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q A + L +DVL AQTGSGKT AF L L + + Sbjct: 17 IIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNI-------D 69 Query: 71 PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AP L +APTRELAVQV + ++ GV V GG + R L+ G IV Sbjct: 70 PSLKAPQVLVLAPTRELAVQVAEAMADFSKHMHGVNVVALYGGQRYDVQLRALRQGPQIV 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL DH++ L+++ L+ +VLDEADEML +GF +D+E I+ P + + +FSAT Sbjct: 130 VGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI + + + + V I S DI V ++ A+V L AI Sbjct: 190 MPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFLEAEDFDAAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 250 IFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 310 DVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIERTMKLTIP 369 Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418 P+ E + R R+ Q L+S D+ + LLAK P E +AA Sbjct: 370 EVELPNAELLSARRLAKFGARVQQQ---LESSDLDQYR---ALLAKLQPEDEQDMETLAA 423 Query: 419 GFLRI---HRAGLCAPEEIT--------PVSLVSGRDRFRDDSRAFKVGGGSRDNFK--- 464 L++ R + P+ I G DRF R + G R + Sbjct: 424 ALLKMAQGERPLILPPDPIVERRPRREFRERDERGGDRFARRERDERGGDRPRRERREVG 483 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDL 520 + + VG E R ++ + I+ + IG IR+ + +E+ D + Sbjct: 484 DMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGDLLTH 543 Query: 521 LRRTVKLDKGIQLKYLG 537 RT L+K + ++ +G Sbjct: 544 FTRTRILNKPMNMQLIG 560 >gi|152995705|ref|YP_001340540.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp. MWYL1] gi|150836629|gb|ABR70605.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1] Length = 438 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 127/332 (38%), Positives = 195/332 (58%), Gaps = 9/332 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +QE L P + KD+L AQTGSGKT+AF +AL LL N RF A L Sbjct: 2 GFTTFTPIQEQSLPPMIEGKDILAQAQTGSGKTLAFSIAL---LLKINPRFFGVQA---L 55 Query: 79 AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 + PTRELA QV +E+ + Y V+++C GG+ + L++GAHIVVGTPGRL Sbjct: 56 VMCPTRELADQVSKEIRKVARYQDNIKVLSLC-GGMPFGPQIGSLEHGAHIVVGTPGRLM 114 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 +H+R L ++ L +VLDEAD MLD+GF D I I++ +P R+ L+FSAT I + Sbjct: 115 EHLRKGTLKLNALNTLVLDEADRMLDMGFVDSIREIVELTPSNRQTLLFSATYGDGIEAI 174 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 +K +Q + + + ++ +I+ V D+ ++ L++ + AIVFC+T+A Sbjct: 175 SKEFQSTPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLATLQHFEPRQAIVFCNTKAE 234 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 L+EH A+ G+L Q++R L + + V +ATDVAARGID+ +++LV Sbjct: 235 SQVVADWLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVKEIDLV 294 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ + + + + HR GRTGRAG G++V ++ Sbjct: 295 VNYDTTRDTDVHTHRIGRTGRAGAAGIAVNLV 326 >gi|262377334|ref|ZP_06070558.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145] gi|262307787|gb|EEY88926.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145] Length = 624 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/345 (37%), Positives = 200/345 (57%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ T VQE + L KD+LVS+QTGSGKT AF LA TL Sbjct: 12 ESLTQALDALGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALANQDTL 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + DR + P L I+PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 72 VPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + + + + A+++DEAD MLDLGF +D+E I + + +++ Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAIGELAANRKQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT +P I TLA+ D +R++I + + ++DI + + + L Sbjct: 191 TLMFSATFAPRIITLAERMMNDPMRISIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLN 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 EEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAI 355 >gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3] gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3] Length = 533 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 202/365 (55%), Gaps = 7/365 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + A+++ GY T +Q + P L ++D+ AQTG+GKT +F L + + L R Sbjct: 40 QKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRAR 99 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P L + PTRELA QV E + VA+ IGGVS + R L+ GA ++ Sbjct: 100 ---ARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVL 156 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FSAT Sbjct: 157 ICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSAT 216 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA-- 244 + P I LA + ++ R+ +A + + R V D + V +++R A Sbjct: 217 MPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRAEEAEL 276 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG+ + +A+DVA Sbjct: 277 KNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASDVA 336 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ ++ + + + + Sbjct: 337 ARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIEKLIT 396 Query: 365 VSVVW 369 V W Sbjct: 397 EKVEW 401 >gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens QYMF] Length = 529 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 159/519 (30%), Positives = 256/519 (49%), Gaps = 41/519 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQ-EAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLL 63 +I + I +AL E G+ T +Q +AI P L+ KD++ AQTG+GKT AFG+ + Sbjct: 10 DIKKDILKALKELGFEVPTPIQVQAI--PHLKMGKDIIGQAQTGTGKTAAFGIPMI---- 63 Query: 64 AENDRFSPASAPLALAI-APTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDL 121 +R +P + + + I APTREL+VQV E++ GV GG + + + L Sbjct: 64 ---ERVNPKNKAVQILIMAPTRELSVQVADEIQKFSNHVIGVKTLAIYGGQPISTQIKAL 120 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I+VGTPGR+ DHI K L + + VVLDEAD+MLD+GF++D+E IL +P +R+ Sbjct: 121 KRGVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQMLDMGFQEDMEAILKETPTERQ 180 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 MFSATIS I +A+ Y K ++ +A + I V ++ A+ IL Sbjct: 181 TAMFSATISREIERIAQKYMKQPEKIMVAQKALTVPQISQYYFEVKPHEKVEALCRILDM 240 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 I+FC T+ SV T+ L + A+ G+L Q +R ++ R+ + +AT Sbjct: 241 DKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTIDLLVAT 300 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGID+ D+E+V++ ++ + E +HR GRTGRAG++G++ + R + L Sbjct: 301 DVAARGIDVNDVEMVMNYDIPEDFEYYVHRIGRTGRAGKEGVAYTLATGKQMRTLKALES 360 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAKHDPEKIAA 418 +V P+V + E+ I D + +G + V+ L H+ IAA Sbjct: 361 YIKGKIVRRKIPTVNDVVEKQKDSI-ADQIHAVIEKGGLTEYTNFVEKLSDDHNSMDIAA 419 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW----FSLSVG 474 ++ + D+ FKV D K +++G Sbjct: 420 ALFKMLTE--------------------KSDTELFKVAENISDTEKEYKADMVRLFINIG 459 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + ++ + +GI+ +G I + TFVEV Sbjct: 460 KSHGVKPKDILGAVAGEAGISGDVVGIIDMYDKFTFVEV 498 >gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] Length = 472 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 146/446 (32%), Positives = 236/446 (52%), Gaps = 32/446 (7%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L KD++ AQTG+GKT AFG+ + + D + Sbjct: 2 GFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFGIPMIDKIDNTKDFIQ------GI 55 Query: 79 AIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 IAPTRELA+QV EL + Y K V+++ GG ++R+ R L+N HI+VGTPGR+ D Sbjct: 56 VIAPTRELAIQVSEELYKIGYGKRTKVLSIY-GGQDINRQIRALKNKPHIIVGTPGRILD 114 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI K + + H+ +LDEADEML++GF DDIE IL P++R+ L+FSAT+ I +A Sbjct: 115 HINRKTMRLDHVHTAILDEADEMLNMGFIDDIEAILAQIPEERQTLLFSATMPAPIRRMA 174 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + + K+ V + ++ S I+ + V ++ + + +L + AIVF T+ V Sbjct: 175 ERFMKEPQIVRVKAKEMTVSSIEQYYIEVHEKNKFDVLTRLLDIQSPELAIVFGRTKRRV 234 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + L + + G+LSQ +R + L+ ++G V +ATDVAARG+D+ + V Sbjct: 235 DELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVAARGLDISGVTHVY 294 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN------MQRRAERLFREANVSVVWE 370 + ++ +PE+ +HR GRTGRAG+ G+++ F+ P+ ++R +R + + E Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVVERTTKRKMERMDAPTLDE 354 Query: 371 PAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 + A+ E+ Q I ++ L K+ D LLA+ D + L++ L Sbjct: 355 ALEGQQKAVMEKIMQTIEENNL------ESYKEAADELLAQKDASTVVQAVLKM----LT 404 Query: 430 APEEITPVSLV------SGRDRFRDD 449 + TPV L S RDR +D Sbjct: 405 KEPDTTPVKLTEEKPLPSKRDRKPND 430 >gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902] gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902] Length = 624 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 202/369 (54%), Gaps = 7/369 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+++GY + + +Q+A + +D++ AQTG+GKT AF L L L S Sbjct: 84 KTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL------ESGQ 137 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELA+QV + + + V GG + L+ G +VVGT Sbjct: 138 KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVDVVVGT 197 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L+ S L ++VLDEADEML +GF DD+E+IL+ PK+R++++FSAT+ P Sbjct: 198 PGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSATMPP 257 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+K Y D V I ++++ I RA+ V +S + A+ +L G + I+F Sbjct: 258 EIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGEGVIIFA 317 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L QV L+G++ Q +R ++ +R G V +ATDVAARG+D+ Sbjct: 318 RTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVATDVAARGLDVE 377 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LVI+ ++ + E +HR GRTGRAGR G +V + +R L R + Sbjct: 378 RIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERATGQPIEMME 437 Query: 372 APSVEAIRE 380 P AI + Sbjct: 438 VPGNTAINQ 446 >gi|302341870|ref|YP_003806399.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM 2075] gi|301638483|gb|ADK83805.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM 2075] Length = 573 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 8/336 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72 A++E+G+ + T +Q A++ L +DV+ AQTG+GKT AFGL L + SP Sbjct: 30 AVTEQGFTSPTPIQTAMIPLMLEGRDVIGQAQTGTGKTAAFGLPLLHNI-------SPGV 82 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELA+QV L+ K G V GG + L+ G +VVGTP Sbjct: 83 GQAQALVLAPTRELAIQVAEALQGYGRKMGARVMAVYGGAPYGLQISRLRKGVDVVVGTP 142 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I K L + ++ VV+DEADEML +GF DI+ IL+++P +R+ +FSAT+ PA Sbjct: 143 GRVLDLIGQKALRLDMVETVVIDEADEMLSMGFIADIQAILEATPSQRQTALFSATLPPA 202 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++++Y + V+++ ++ R L+ D+ A+ +L +A++FC Sbjct: 203 IRQMSQSYMVEPQSVSVSPRQLTVEAVEQRYYLLDERDKLAALCRLLEVEPVASALIFCR 262 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+A + L+ F A++G+LSQ+ R L R+ + ++ +ATDVAARG+D+ D Sbjct: 263 TKAGTGQLADELSARGFAAEAINGDLSQEARIRVLGRFRNNQLKLLVATDVAARGLDIDD 322 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + VI+ + +PE +HR GRTGRAGR G+++ ++ Sbjct: 323 ISHVINFDPPQDPEVYVHRIGRTGRAGRDGVAISLL 358 >gi|251796764|ref|YP_003011495.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2] gi|247544390|gb|ACT01409.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2] Length = 477 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 214/382 (56%), Gaps = 8/382 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M +F+ + + I ALS G+ T VQ ++ L ++D++V +QTGSGKT A+G+ L Sbjct: 1 MTVFKELSKEITTALSSLGFDTPTEVQAKVIPIALEKRDLVVKSQTGSGKTAAYGIPLCE 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L+ N+ + P AL + PTRELAVQV ++ + + G H +R + Sbjct: 61 -LVEWNE-----NKPQALILTPTRELAVQVTEDITNIGRFKRIKATALYGKSPFHIQRAE 114 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ H+VVGTPGR+ DHI L + L +V+DEADEML++GF + ++ I+ + PK R Sbjct: 115 LKQRTHMVVGTPGRVLDHIERGTLALDKLAYLVIDEADEMLNMGFIEQVQSIIQALPKGR 174 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++FSAT + L++ Y ++ I + + I++ + V +D+ + ++L Sbjct: 175 VTMLFSATFPEDVAKLSRRYMDSPAQIEIQASGLTTATIEHSLIEVKEADKLALLQDVLV 234 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + I+FC T+ +V + + +AE + + G L Q+ER + R G+ R IA Sbjct: 235 VENPDSCIIFCRTQENVDKLFRSMAELDYPCDRIHGGLEQEERFEVMNAFRRGQFRYLIA 294 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359 TDVAARGID+ ++ VI+ ++ E+ +HR+GRTGRAG+ G ++ F+ P + +R AE + Sbjct: 295 TDVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKNGKAITFLAPNDGKRLAE-I 353 Query: 360 FREANVSVVWEPAPSVEAIRER 381 S+ APS EA+ R Sbjct: 354 EDYIGFSIPRVQAPSEEAVNNR 375 >gi|294783794|ref|ZP_06749118.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp. 1_1_41FAA] gi|294480672|gb|EFG28449.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp. 1_1_41FAA] Length = 529 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 151/508 (29%), Positives = 250/508 (49%), Gaps = 34/508 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + LS++GY + T +Q + L+ +KD++ AQTG+GKT AF L + + Sbjct: 21 KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPIIENFETSDHHIQ- 79 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A+ + PTRELA+QV E+ L + V GG S+ +R+ ++ G +VVGT Sbjct: 80 -----AIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ LK VLDEADEML++GF +DIE IL + +RML FSAT+ P Sbjct: 135 PGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRMLFFSATMPP 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249 I +AK + K+ + + S R+ + + +++RD A+ I+ I+ Sbjct: 195 EIMKIAKTHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 252 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+ L + + L G++ Q R L+ + + + +ATDVAARGID Sbjct: 253 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 312 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 313 INDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIR 371 Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 E P V+ + + RI+ D + +D+ KK+ LL + E I A L++ + Sbjct: 372 KESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAENIVASLLKLTYS 431 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 + +S V D G + +++G K + L+ Sbjct: 432 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVD 472 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVS 514 + + + + + I V +FV V+ Sbjct: 473 FIVKKAKVKQAYIKNAEVYDAFSFVSVA 500 >gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13] gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13] Length = 444 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 123/359 (34%), Positives = 210/359 (58%), Gaps = 2/359 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 IG+A+S Y T +QE + L KDVL SAQTG+GKT AF L L + + + + Sbjct: 12 IGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLLNLVEKKPKHKH 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 +P L ++PTRELA Q+ +EL+ + +GGVS + + L++ + +V Sbjct: 72 KRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQNKLLKSNVNFLV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D ++ + +N+ H+ A+V+DEAD MLD+GF DI+ I +S+ + +++LMF+AT+ Sbjct: 132 ATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQDQQVLMFTATL 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI 248 + I +A+ + KD R+ + EN+ + +I A VA + + +V++L AI Sbjct: 192 NKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLVDVLNEADLNQAI 251 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +T+ R + L + L G++SQ+ER+ + ++ ++ +ATDVAARGI Sbjct: 252 IFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQILVATDVAARGI 311 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 D+ D+ VI+ +L E+ +HR GRTGRA RKG ++ ++ + +++ + AN+ + Sbjct: 312 DVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFMLQKIEKYANIKI 370 >gi|291616016|ref|YP_003518758.1| DeaD [Pantoea ananatis LMG 20103] gi|291151046|gb|ADD75630.1| DeaD [Pantoea ananatis LMG 20103] Length = 633 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 166/557 (29%), Positives = 267/557 (47%), Gaps = 42/557 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E+L+ GYV + +Q + L +DVL AQTGSGKT AF L L + P Sbjct: 22 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 74 Query: 73 -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP L +APTRELAVQV + E+ G+ V GG + R L+ G +VVG Sbjct: 75 VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 134 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ L++S+L+ +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 135 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP 194 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI + K + KD V I S DI ++ A + +A+V L AI+F Sbjct: 195 EAIRRITKRFMKDPQEVRIQSSMTTRPDIS-QSYWTAYGRKTDALVRFLEAEDFDAAIIF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 254 VRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 314 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 373 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLRI- 423 P+ E + +R + ++ + + LLAK PE+ +AA L++ Sbjct: 374 ELPNAELLGQRRLAKFAAK--VQQQLESSDLEQYRALLAKMQPEEELDIETLAAALLKMA 431 Query: 424 --HRAGLCAPEEITPV-------------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468 R + + P G RD R + R + Sbjct: 432 QGERPLIVPADAPRPARREFRERDDRRESRDARGPRESRDGDRPRR----ERRDVGDMQL 487 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524 + + VG E R ++ + I+ + IG I++ + +E+ D + RT Sbjct: 488 YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDVLQHFTRT 547 Query: 525 VKLDKGIQLKYLGGEKP 541 L+K + ++ LG +P Sbjct: 548 RILNKPMNMQLLGDAQP 564 >gi|319648379|ref|ZP_08002595.1| DeaD protein [Bacillus sp. BT1B_CT2] gi|317389458|gb|EFV70269.1| DeaD protein [Bacillus sp. BT1B_CT2] Length = 481 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 195/335 (58%), Gaps = 6/335 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL GY + T+VQ ++ L+++DV+V ++TGSGKT AFG+ L E ++ Sbjct: 15 ITKALDHLGYKHPTAVQSEVIPAALKKRDVVVKSRTGSGKTAAFGIPLCELTEWEENK-- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA QV +L + + A G S R++ +L+ HIVVG Sbjct: 73 ----PQALILTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQKCHIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + LK +V+DEAD+ML++GF D + I+ P++R ++FSAT Sbjct: 129 TPGRVLDHIEKGTFPLEKLKYLVIDEADKMLNMGFIDQVGAIIRHLPEERLTMLFSATFP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L+ Y KD +++ + + +DI+++ ++V +D + +V+++ + IVF Sbjct: 189 EDVEQLSLQYMKDPLKIEMKAGGTTTADIEHQLIIVDENDPFSLLVDLIIVENPDSCIVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V+ + LA + + G + Q++R + R G R IATDVAARGID+ Sbjct: 249 CRTQEQVNELQRRLAGLGYPCAKIHGGMPQEDRFAVMNRFRRGAFRYLIATDVAARGIDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++ VI+ EL + E+ +HR+GRTGRAG +G ++ Sbjct: 309 ENITHVINYELPLDQESYVHRTGRTGRAGSRGKAI 343 >gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] Length = 494 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 134/345 (38%), Positives = 199/345 (57%), Gaps = 5/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65 IP+ + A+++ GY T +Q + + DV+ AQTG+GKT F L L L Sbjct: 9 IPE-LQRAVADAGYTEPTPIQRQAIPIVIAGNDVMGGAQTGTGKTAGFTLPLLHRLARHA 67 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 N SPA AL +APTRELA+QV ++ Y+K + A CI GGV ++ + ++L+ Sbjct: 68 NTSTSPARHQTRALILAPTRELAMQVYESVKT-YSKHLPLRATCIYGGVDMNPQIQELRR 126 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IV+ TPGRL DH++ K +N++ ++ +VLDEAD MLD+GF DI+ IL P R+ L Sbjct: 127 GIEIVIATPGRLLDHVQQKTINLTQVEMLVLDEADRMLDMGFIPDIKRILALLPASRQSL 186 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA K+ + +A N I +R V+ + N + ++LR+ Sbjct: 187 LFSATFSDEIKKLADQMLKNPQLIEVARRNMVSETITHRVHPVSSGMKRNLLAHLLRHQP 246 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+VF T+ R L H ++ G+ SQQ+R+ L+ + G+ RV +ATDV Sbjct: 247 DTQALVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKAGKLRVLVATDV 306 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ +L VI+ EL E+ +HR GRTGRAG +G +V ++ Sbjct: 307 AARGIDIDELPYVINYELPHTAEDYVHRIGRTGRAGHQGNAVSLV 351 >gi|16800283|ref|NP_470551.1| hypothetical protein lin1214 [Listeria innocua Clip11262] gi|16413688|emb|CAC96445.1| lin1214 [Listeria innocua Clip11262] Length = 470 Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 133/382 (34%), Positives = 211/382 (55%), Gaps = 20/382 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T VQ+A++ L +D++ +QTGSGKT AF + +A ++ E ++ Sbjct: 10 IKRAINELGYKEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVVWEENK-- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELA+QV E + + A G +++ +L HIVVG Sbjct: 68 ----PQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVG 123 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PK+R+ L FSAT+ Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATLP 183 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ + + + +ASE + + I + V + +++ + ++L +AI+F Sbjct: 184 EEMQDLIKRYQDNPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIF 239 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T +L + + G L Q++R A+ + G++R IATDVA RGID+ Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ LVI+ +L EN +HR GRTGRAG+ G ++ + N + N+++ + Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLNITIEKK 356 Query: 371 PAPSV-------EAIRERDAQR 385 P++ EA R++ +R Sbjct: 357 RKPTIIEVKANEEAFRKKQQKR 378 >gi|289192981|ref|YP_003458922.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp. FS406-22] gi|288939431|gb|ADC70186.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp. FS406-22] Length = 362 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 216/366 (59%), Gaps = 20/366 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA 64 N+ I A+ +G+ T +Q ++ L +K +++ A+TGSGKT AF + L L+ Sbjct: 7 NLSDNILNAIKNKGFEKPTDIQMKVIPLFLNDKGNIVAQARTGSGKTAAFAIPLIE-LVN 65 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 EN+ A+ + PTRELA+QV E+E L + +A GG +++ + + L+N Sbjct: 66 ENNGIE------AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN- 118 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A+IVVGTPGR+ DHI LN+ ++K +LDEADEML++GF +D+E IL++ + +R+L+ Sbjct: 119 ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFVEDVERILNACNRDKRILL 178 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241 FSAT+ I LAK Y D + + + +++I+ + V ++R + IL+ + Sbjct: 179 FSATMPREILNLAKKYMGDYSFI----KAKINANIEQSYIEVNENERFEVLCRILKNKDF 234 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +G +VFC T+ +L + F+ A+ G+L+Q +R +++ + R ++ IAT Sbjct: 235 YG----LVFCKTKKDTKELANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKRIKILIAT 290 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DV +RGID+ DL VI+ L NPE+ +HR GRTGRAG+KG ++ +I + ++ + + R Sbjct: 291 DVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLKYIER 350 Query: 362 EANVSV 367 + + Sbjct: 351 MTKLKI 356 >gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591] gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus suis ST3] gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591] gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3] Length = 526 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 198/340 (58%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + G+ + +QE + L KDV+ AQTG+GKT AFGL + + N Sbjct: 15 AVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTNN------Q 68 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL IAPTRELAVQ EL + GV V GG S+ ++ + L++GAHIVVGTPG Sbjct: 69 AIQALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D I+ K L + ++ ++LDEADEML++GF DDIE I++ P+ R+ L+FSAT+ I Sbjct: 129 RLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + K+ V IA++ + ++D + V ++ + + ++ + +IVF T Sbjct: 189 KRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPELSIVFGRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T+ L F+ + G+L Q +R ++ ++ + V +ATDVAARG+D+ + Sbjct: 249 KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348 >gi|198282877|ref|YP_002219198.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666755|ref|YP_002425078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247398|gb|ACH82991.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518968|gb|ACK79554.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 617 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 167/537 (31%), Positives = 268/537 (49%), Gaps = 46/537 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E GY + +Q + P L +DV+ AQTG+GKT AF L L S + Sbjct: 18 IQKAVTEIGYEQPSPIQAQSIPPLLEGRDVIGLAQTGTGKTAAFALPLLSRVDLG----- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AP L +APTRELA+QV ++ YAK G V GG ++ + + LQ G +V Sbjct: 73 -LRAPQLLVLAPTRELAIQVAEAMQS-YAKFLPGFHVLPIYGGQAMTLQLKQLQRGVQVV 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+R K L + HL+AVVLDEADEML +GF D +E IL +P+ R++ +FSAT Sbjct: 131 VGTPGRIQDHLRRKTLRLDHLQAVVLDEADEMLRMGFIDAVEDILKHTPEGRQVALFSAT 190 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI +AK Y ++ + + I S + I R V+ + + +A+ IL + + Sbjct: 191 MPDAIRRIAKTYLRNPLEIRIKSATTTVAAIRQRYWQVSGTHKLDALTRILEVEESNAWL 250 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ + + L + AL+G+LSQ R ++ ++ G + +ATDVAARG+ Sbjct: 251 VFVRTKTATVELAERLEARGYACGALNGDLSQAMREQTIERLKAGTLDIVVATDVAARGL 310 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + VI+ ++ ++ E +HR GRTGRAGR G ++ + + + R ++ Sbjct: 311 DVDRISHVINYDIPNDTEAYVHRIGRTGRAGRTGDAILFVAPRERHLLHAIERATGQTIT 370 Query: 369 WEPAPSVEAIRERDAQRIL---------QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 PS+E + +R + QD +++ D ++ DV L +IAA Sbjct: 371 AMHLPSIEDVADRRMSQFKDQLTEVLNSQDLAVFETLIADYQRESDVGLG-----EIAAA 425 Query: 420 FLRIHR---------AGLCAPEEITPVSLVSGRD----RFRDDSRAFKV-------GGGS 459 + + A + P +GR R DD R + GGG Sbjct: 426 LAYMVQKERPLIPVEAEVSRPMRSDSAGSGAGRPPSSRRRADDERGARPPRAAAASGGGD 485 Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + F L VG A+ + ++ + +GI ++I +++ + T VE+ AD Sbjct: 486 DVPMR---RFRLDVGESHGAQVKNIVGAIANEAGIPSRNIRKVQINAEHTTVELPAD 539 >gi|221064954|ref|ZP_03541059.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1] gi|220709977|gb|EED65345.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1] Length = 469 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 137/360 (38%), Positives = 198/360 (55%), Gaps = 24/360 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73 L + GY +T +Q A L L+ KD++ A TGSGKT AFGL + DR +P Sbjct: 29 LQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMV-------DRLNPRWF 81 Query: 74 APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL + PTRELA QV E+ L A+ + V GGV + L+NGAHIVVGTP Sbjct: 82 AVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLENGAHIVVGTP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L+I +LK +VLDEAD MLD+GF DIE ++ P R+ L+FSAT Sbjct: 142 GRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPVDRQTLLFSATYPEG 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + +D V +A+ QHS I+ R V ++ + +L + +++I F Sbjct: 202 IASLASRFMRDPQTVKVAT---QHSAGKIEQRWYEVGAREKVATVARLLAHFRPESSIAF 258 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ L F +AL GEL Q+ER L + V +ATDVAARG+D+ Sbjct: 259 CNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAARGLDI 318 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----------QNMQRRAERLF 360 DL VI+ +++ +PE +HR GRTGR +G+++ ++ + +Q RA + F Sbjct: 319 ADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIEQLQGRASQFF 378 >gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A] Length = 492 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 141/470 (30%), Positives = 245/470 (52%), Gaps = 28/470 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAKAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R +++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428 P+ I E + L D ++I +++ ++ +P ++ L + + GL Sbjct: 386 PT---INENQIIKTLHDARVSEAIISLYEQLTEIF----EPSQLVLKLLSLQFETSKIGL 438 Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 P+E TP + + + +R+FK G +D + ++ S Sbjct: 439 NQQEIDAIQNPKEKTPKP-SNKKTHQHEQARSFK-KGQHKDRYPKTNHHS 486 >gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium linens BL2] Length = 606 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 179/583 (30%), Positives = 284/583 (48%), Gaps = 40/583 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ +GY T +Q + + +DV+ AQTG+GKT AF L S L AE R + Sbjct: 26 QAVQAQGYETPTPIQAETIPALVEGRDVIGLAQTGTGKTAAFALPALSDL-AEAGRAN-- 82 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA+QV E YA V GG + + L+ GA +VVG Sbjct: 83 DGPFALVLTPTRELAIQVA-EAFTSYATNLDDFSVLPIYGGQAYGPQLSGLKRGAQVVVG 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH++ L + L+ ++LDEADEML +GF +DIE I S R++ +FSAT+ Sbjct: 142 TPGRVIDHLKKGSLKLGSLRHLILDEADEMLKMGFAEDIEEIFSQSGDSRQVALFSATMP 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +I L Y + V +AS+++ S+I R +V S + +A+ IL + I+F Sbjct: 202 TSIHRLTGKYLNNPKEVRVASKSQTGSNIRQRYHMVQHSHKLDALTRILEVEEYEGIIMF 261 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L F+ A++G++ QQ R + M+R+G+ + +ATDVAARG+D+ Sbjct: 262 VRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAARGLDV 321 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + LV++ ++ + E+ +HR GRTGRAGR G ++ + QR + R V Sbjct: 322 ERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAILFVTPREQRLLGSIERATKQKVEQL 381 Query: 371 PAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP-EKIAAGF--LRIH 424 PSVE + ++ + D L + + L+++ P IAA L + Sbjct: 382 KMPSVEELTNTRVEKFTKRIDDVLATTELTELATVIEQYELSRNVPATDIAAALASLVLE 441 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDS--RAFKVG--GGSRDNFKGSSWFSLSVGSKQKAE 480 L A P GRDR DS R K G SR + + + L++G ++ + Sbjct: 442 SNTLKADPMPEPSRGKPGRDR---DSGGRDGKPGRERSSRPRDENMTTYRLAIGRNERLQ 498 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY----L 536 ++ + G+ + IG I ++ + T V++ D LD + K + Sbjct: 499 PGAVVGAIANEGGLTSKEIGHIDIRSNHTLVDLPKD----------LDSSVMRKLSNTQI 548 Query: 537 GGEKPDFR---GYKSSGFKSKN--SQDGATKRFK--RFKGASK 572 G D R G + FK +N Q G ++ F+ R GA K Sbjct: 549 QGRPIDIRPDSGRPARPFKKRNFDKQPGDSRNFRNDRRGGAKK 591 >gi|88813706|ref|ZP_01128932.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231] gi|88789025|gb|EAR20166.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231] Length = 586 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/380 (37%), Positives = 208/380 (54%), Gaps = 15/380 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL + GY + +Q + L +DVL AQTG+GKT AF L L S L L++ Sbjct: 23 ALHDVGYEVPSPIQAHTIPHILAGRDVLGQAQTGTGKTAAFALPLLSRLDLSQ------- 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + P L + PTRELA+QV + A+ TG V GG + + L +G H+VVGT Sbjct: 76 AVPQVLVLTPTRELAIQVAEAFQRYAARLTGFHVLPLYGGQDYRGQFQRLAHGTHVVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L + L +VLDEADEML +GF DD+E+ILD P R++ +FSAT+ P Sbjct: 136 PGRVMDHMRRGTLKLDALACLVLDEADEMLRMGFIDDVEWILDQIPSTRQIALFSATLPP 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +AK + + ++I I R LV + + +A+ IL IVF Sbjct: 196 VIRRIAKKHLHNPQEISIKVRTATAETIRQRYWLVNGTHKLDALTRILEAEPFDGMIVFV 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR + + L + ALSG++SQ+ R + +Q ++ G+ + +ATDVAARG+D+ Sbjct: 256 RTRTATVELAEKLEARGYAAAALSGDISQKLREHTVQRLKGGKLDILVATDVAARGLDVE 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368 + VI+ ++ ++ E +HR GRTGRAGR G ++ FV P Q M R E+ R+ + Sbjct: 316 RISHVINYDIPNDTEAYVHRIGRTGRAGRAGDAILFVTPREQRMLRMIEKATRQ---KIT 372 Query: 369 WEPAPSVEAIRERDAQRILQ 388 PS EAI ++ R Q Sbjct: 373 AMSPPSTEAINDQRIARFQQ 392 >gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] Length = 453 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 141/388 (36%), Positives = 224/388 (57%), Gaps = 19/388 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +ALS+ GY + + +Q A + L KDV+ AQTG+GKT AF + + S L + DR Sbjct: 28 KALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILSRL--DVDR---- 81 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV A G+ V GG + + L+ GA I+VGT Sbjct: 82 KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRRGAQIIVGT 141 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S+L+ +VLDEADEML +GF+DD+E IL +P+ +++ +FSAT+ P Sbjct: 142 PGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVALFSATMPP 201 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI ++K Y D V + + ++ S+I R V VA + +A+ IL + I+F Sbjct: 202 AIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRILEVESFEAMIIFV 261 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L F A++G++ Q +R + ++ G + +ATDVAARG+D+ Sbjct: 262 RTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAARGLDVD 321 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G + +FV P +++ + ER R+ + Sbjct: 322 RISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSIERTTRQPLTEIQ 381 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI 396 P+VE + +AQR+ + F DSI Sbjct: 382 L---PTVEDV---NAQRVSK---FGDSI 400 >gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026] Length = 479 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 193/348 (55%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ G+ T +QE + L EKDV+ AQTG+GKT AFGL + L + Sbjct: 2 NLKPEILKAIKRSGFEEATPIQEKTIPLVLEEKDVIGQAQTGTGKTAAFGLPILQNLDKQ 61 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +D A+ I PTRELA+Q EL L V V GG + R+ R L+ Sbjct: 62 HDSIQ------AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP 115 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGRL DH++ ++IS +K +VLDEADEMLD+GF DIE IL + K + L+F Sbjct: 116 AILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLF 175 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + + D V I + + ID V +++ + + ++ Sbjct: 176 SATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNPD 235 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++F T+ V T+ L + + G+LSQ +R + L+ R G+ + +ATDVAA Sbjct: 236 LAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAA 295 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + ++ +P++ +HR GRTGRAG+ GMSV FV P + Sbjct: 296 RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEI 343 >gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4] gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4] Length = 492 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+++L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNTTNTDITQRFYVINEHERAEAIMHLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|317152644|ref|YP_004120692.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942895|gb|ADU61946.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 551 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 141/418 (33%), Positives = 218/418 (52%), Gaps = 21/418 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 AL +G+ T +QE + L+ D++ AQTG+GKT AFGL + T + R Sbjct: 16 ALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLPIIETAVENAKRVQ-- 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA+QV E+ L K + V GG ++H + + L++G +VVGTP Sbjct: 74 ----ALVLTPTRELAIQVADEINSLKGKKRIRVLPVYGGQAIHMQLKALKSGVDVVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH++ L++ L VLDEADEM ++GF DD+ IL S+ RR L+FSAT+ Sbjct: 130 GRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRTLLFSATMPHE 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYHGAKNAIV 249 + +AK + D + + +E +DI + VA SDR A+ ++ +V Sbjct: 190 VMRIAKEFMGDYELITVKAEK---NDIPLTKQVFHEVADSDRFEALCRVVDAEPDFYGLV 246 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F TRA R L E + + G+LSQ R L + + +ATDVAARGID Sbjct: 247 FTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDVAARGID 306 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 +PDL V++ L +P+ +HR+GRTGRAG++G+++ +I + RR + + + + + Sbjct: 307 VPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITKSSGIDITK 366 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIAAGFLR 422 P + + R++ LD I +E M LL +PE + A L+ Sbjct: 367 AKLPCIHDVIYSKKSRMVDG---LDGIIQEEAHTPYLPMARDLLEGREPEDVVAALLK 421 >gi|325003093|ref|ZP_08124205.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1] Length = 471 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 198/369 (53%), Gaps = 3/369 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY + +Q A + P + +D+L A TG+GKT AF L + L Sbjct: 48 ALDGLGYETPSPIQAAAIGPLIAGRDLLGQAATGTGKTAAFALPMLQRLADGRVSRDRGP 107 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P + +APTRELA+QVG + A+ G VA GG + + L+ G +VV TPG Sbjct: 108 KPFGIVLAPTRELAMQVGEAVTKYGAELGARVACVFGGAPIGPQLGQLRRGVDVVVATPG 167 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R D I L++ ++ VLDEADEMLD+GF +DIE IL S+P+ R+ ++FSAT+ I Sbjct: 168 RAIDLINRGALSLDAIEVAVLDEADEMLDMGFVEDIETILGSTPEGRQTVLFSATMPGRI 227 Query: 194 TTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +LA+ + D + I A+ + + A V S A+ +L AIVF Sbjct: 228 QSLARTHLSDPADIRIKREATPEGEAPKVRQTAYHVPRSHVTVALGRVLEMEQPTAAIVF 287 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TRA V T+ L + AL G + Q+ R+ ++ +R GR + +ATDVAARG+D+ Sbjct: 288 CRTRADVDAVTETLTARGLRAEALHGGMDQEHRTRVVERLRAGRTELLVATDVAARGLDI 347 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L V++ ++ S+PE+ +HR GR GRAGR+G+++ ++ R + R SV Sbjct: 348 DSLTHVVNHDVPSSPESYVHRIGRVGRAGREGVAITLVTPGSVRHLRNIERLIGGSVPSA 407 Query: 371 PAPSVEAIR 379 P PS +R Sbjct: 408 PVPSPADLR 416 >gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus TB-2] gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus TB-2] Length = 460 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 13/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E G+ + +QE + L KDV+ AQTG+GKT AFGL + S + + Sbjct: 16 LEEIGFEKPSPIQEKAIPVILEGKDVVAQAQTGTGKTAAFGLPILSKIKKDEK------- 68 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL I PTRELA+QV E+ GV A GG S +R+ + ++N + ++ TPGR Sbjct: 69 --ALIITPTRELAIQVSEEIFRFGKYLGVHTATVYGGSSYNRQIKHIEN-SQFIIATPGR 125 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D ++ ++I+ K V+LDEADEMLD+GF DDI+ I P R+ L+FSAT+ I Sbjct: 126 LLDLLKSGKIDIAP-KYVILDEADEMLDMGFLDDIKEIFKFVPSNRQTLLFSATMPEPIK 184 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 LAK K+ + I + + +I ++ +R +A++ ++ Y +IVFC T+ Sbjct: 185 NLAKTILKNPEFITITRKQVTNENIKEYFYVIDEFERKDALIRLIDYKNPTKSIVFCRTK 244 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V + L+ F L G++ Q++R ++ + R + +ATDVAARG+D+ ++ Sbjct: 245 KDVDDIAEFLSGAGFDAKGLHGDMDQRKREEVIRGFKSDRIEILVATDVAARGLDVNNVS 304 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 V + L +PE+ +HR GRTGRAG++GM++ ++ + R R+ + + ++ + P+ Sbjct: 305 HVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALNRIQKISK--IILKEIPT 362 Query: 375 VEAIRERDAQRIL 387 + +++++ Q+I+ Sbjct: 363 LADVKDKEIQKII 375 >gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 526 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 202/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I + + G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELNLSENILATVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + AL IAPTRELAVQ EL + GV V GG S+ ++ + Sbjct: 61 DKIDTNRNLVQ------ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ AI + + ++ V +A++ +D + V D+ + + ++ Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +IVF T+ V T+ L ++ + G+L Q +R L+ ++ + + Sbjct: 235 DVNQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348 >gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca T-27] gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca T-27] Length = 594 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 202/372 (54%), Gaps = 5/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL GY T VQ A + P L KDVL A TG+GKT AF L L T +AE R + Sbjct: 25 IAEALVGLGYEEPTPVQRAAIPPLLEGKDVLALAATGTGKTAAFSLPLL-TRIAEKGRRA 83 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P L + PTRELA+QV + G+ GG S+ + R L+ G +V+ Sbjct: 84 -GNGPGVLILVPTRELAMQVAEAVHRYGKPLGLQALAVYGGASMELQVRALRRGVDVVIA 142 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR DHI+ L L AVVLDEADEMLD+GF +++E ILD++P+ ++ +FSAT+ Sbjct: 143 TPGRAVDHIKRGTLVFDGLSAVVLDEADEMLDMGFAEELEAILDATPENKQTALFSATLP 202 Query: 191 PAITTLAKNYQKDAVRVNIASE---NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 P I +A+ + + V V + E + + + A +V+ + + A+ +L +A Sbjct: 203 PRIGGIAQKHLRQPVHVKVEREVVAEGESARVRQVAYVVSRAHKMPALARVLDIEQPTSA 262 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVFC TR V ++ L + AL G LSQ +R +Q R + + IATDVAARG Sbjct: 263 IVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVDLLIATDVAARG 322 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ + V++ ++ + E +HR GRTGRAGR+G++V R + R+ + Sbjct: 323 LDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGREGVAVTFAEPRENRLLRNIERQTGQKI 382 Query: 368 VWEPAPSVEAIR 379 P+V +R Sbjct: 383 EIAQVPTVADLR 394 >gi|327396268|dbj|BAK13690.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355] Length = 630 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 169/558 (30%), Positives = 271/558 (48%), Gaps = 44/558 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E+L+ GYV + +Q + L +DVL AQTGSGKT AF L L + P Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 71 Query: 73 -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP L +APTRELAVQV + E+ G+ V GG + R L+ G +VVG Sbjct: 72 VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ L++S+L+ +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 132 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI + K + KD V I S DI ++ A + +A+V L AI+F Sbjct: 192 EAIRRITKRFMKDPQEVRIQSSMTTRPDIS-QSYWTAYGRKTDALVRFLEAEDFDAAIIF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 251 VRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVW 369 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR R + R +++ Sbjct: 311 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIPE 369 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLRI 423 P+ E + +R + ++ + + LLAK PE+ +AA L++ Sbjct: 370 VELPNAELLGQRRLAKFAAK--VQQQLESSDLEQYRALLAKMQPEEELDIETLAAALLKM 427 Query: 424 ---HRAGLCAPEEITPV-------------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 R + + P G RD R + R + Sbjct: 428 AQGERPLIVPADAPRPARREFRERDDRRESRDARGPRESRDGDRPRR----ERRDVGDMQ 483 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523 + + VG E R ++ + I+ + IG I++ + +E+ D + R Sbjct: 484 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDVLQHFTR 543 Query: 524 TVKLDKGIQLKYLGGEKP 541 T L+K + ++ LG +P Sbjct: 544 TRILNKPMNMQLLGDAQP 561 >gi|217964610|ref|YP_002350288.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23] gi|217333880|gb|ACK39674.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23] gi|307570824|emb|CAR84003.1| ATP-dependent RNA helicase [Listeria monocytogenes L99] Length = 470 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 190/341 (55%), Gaps = 13/341 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T VQ+A++ L +D++ +QTGSGKT AF + +A + E ++ Sbjct: 10 IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELA+QV E + V A G +++ +L HIVVG Sbjct: 68 ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PK+R+ L FSAT+ Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ D + + +ASE V + +++ + ++L +AI+F Sbjct: 184 EEMQDLIKRYQDDPMVIEMASEKTN----PIFHVEMQTDNKEKTLKDVLITENPDSAIIF 239 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T +L + + G L Q++R A+ + G++R IATDVA RGID+ Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ++ LVI+ +L EN +HR GRTGRAG+ G ++ + N Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 337 >gi|330812282|ref|YP_004356744.1| ATP-independent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380390|gb|AEA71740.1| putative ATP-independent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 560 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 131/359 (36%), Positives = 202/359 (56%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 120 LESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 176 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A+ + V GGVS + L++GAHI+VGTPG Sbjct: 177 ---LVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIASLEHGAHIIVGTPG 233 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D IE I+ +P++R+ L+FSAT I Sbjct: 234 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIQQTPERRQTLLFSATYPVGI 293 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 L+ + ++ +V + HSD I+ R ++ +R +A+V +L + + + FC Sbjct: 294 KQLSSKFMRNPQQVKAEAF---HSDAQIEQRFYEISPEERMDAVVKVLAHFRPASCVAFC 350 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 351 FTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 410 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG+++ ++ + RA+ + + + W+ Sbjct: 411 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIEQLQKSPLSWD 469 >gi|78355388|ref|YP_386837.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217793|gb|ABB37142.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 529 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 129/385 (33%), Positives = 210/385 (54%), Gaps = 9/385 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE +P I +A + G+ +L VQ + L+ +D++V ++TGSGKT A+ L L Sbjct: 42 FEEVPDTIRQAAARAGWQSLMPVQLHTMPYFLQRRDLMVQSRTGSGKTGAYLLPLI---- 97 Query: 64 AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 DR P AL + PTRELA+QV E E LY + G+ +A GGV ++ L+ Sbjct: 98 ---DRIDPHKNECQALVLVPTRELALQVVHEAEVLYQELGINIAAVYGGVGYGKQTDALK 154 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-R 181 GA +VVGTPGR+ DH+ + L + L+ ++ DEAD ML +GF D++ + P++R Sbjct: 155 AGAQLVVGTPGRVLDHLLRRTLTLDALRVLLFDEADRMLSIGFYPDMKEVQRYLPRRRIS 214 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT P + LA + D ++++ + + ++D +V I+ Sbjct: 215 TYLFSATYPPHVVRLAGEFLHDPQMLSLSHSQVHITQTPHVFYECKPMEKDRVLVRIIEI 274 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +AI+FC+T+++V T VL + LS +LSQ +R L+ +R+G+ R +AT Sbjct: 275 ENPASAIIFCNTKSNVHYVTAVLQGFGYNADELSADLSQAKREQVLKKLRNGQVRFLVAT 334 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGID+PDL V+ E + E+ +HR+GRTGRAG G + ++ + R+ + Sbjct: 335 DVAARGIDIPDLSHVVLYEPPEDHESYIHRAGRTGRAGASGEVISLVDIMQKLELGRIAK 394 Query: 362 EANVSVVWEPAPSVEAIRERDAQRI 386 + + P P+ E + + +R+ Sbjct: 395 HYQIDMQMRPTPTDEDVAKVATERM 419 >gi|310644435|ref|YP_003949194.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2] gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2] Length = 525 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 211/371 (56%), Gaps = 17/371 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL E+G T VQ+ + + +DV+ A TG+GKT+AF L + L + Sbjct: 15 EALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDKRH---- 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL IAPTRELA+Q+ E + L A + + + GG V R+ R L+ GA +++GT Sbjct: 71 --PQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLRKLKGGAQLIIGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R L++ +K +VLDEAD+ML +GF +D+E IL P +R+ ++FSAT+ Sbjct: 129 PGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQTMLFSATMPA 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249 I LA+ Y + V V + S + R V+V +DR A+V++L A++ Sbjct: 189 GIRKLARVYMNEPVDVKVKSASSVPVS-QIRQVVVQTTDRGKQQALVDMLNTDRPYLAVI 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ S+ + L E F+ L G+LSQ +R ++ R+ + ++ +ATDVAARG+D Sbjct: 248 FCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLVATDVAARGLD 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----IPQ--NMQRRAERLFRE 362 + + V + ++ + E+ +HR GRTGRAG KG++V + +P+ N+QR A F Sbjct: 308 VEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQRVAGVTFTS 367 Query: 363 ANVSVVWEPAP 373 + PAP Sbjct: 368 SEGGGQRRPAP 378 >gi|255524805|ref|ZP_05391755.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] gi|296188658|ref|ZP_06857046.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7] gi|255511472|gb|EET87762.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] gi|296046922|gb|EFG86368.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7] Length = 480 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/379 (33%), Positives = 210/379 (55%), Gaps = 15/379 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I +++ GY + VQ+ ++ L+ KDV+V +QTGSGKT AF + + + + END Sbjct: 13 QDILKSIKNIGYKKPSKVQQQVIPLILQGKDVIVKSQTGSGKTAAFAIPICEHMEIEEND 72 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AL + PTRELAVQ+ ++ + + + G + ++++L+ HI Sbjct: 73 -------AQALILTPTRELAVQIKEDISNIGRFKRIRCSAIFGKQPMDTQKKELKQRVHI 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +VGTPGR DHI+ +N+ ++K ++LDEADEML++GF +++ I+++ P R+ ++FSA Sbjct: 126 IVGTPGRTLDHIKRGNMNLQNIKFLILDEADEMLNMGFIEEVSEIIENIPVSRQNMLFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ AI L+K Y K+ +V I E +I+ + ++ +++ + + N+L A Sbjct: 186 TMPEAIENLSKKYMKNPAKVEITPEKLTVDNIEQKCYIIEENNKFSLLRNLLYIENPDTA 245 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVFC T+ +V T + + + G + Q ER + + + G R IATDVAARG Sbjct: 246 IVFCRTKNNVDYVTSRMKAEKYSCDKIHGGMLQNERLDTMNSFKMGEFRFLIATDVAARG 305 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS 366 ID+ ++ VI+ +L E+ +HR GRTGRAG KG ++ F P +R E Sbjct: 306 IDIDNVTHVINYDLPMEKESYIHRIGRTGRAGNKGTAITFSTPN-----EDRFLSEIEDY 360 Query: 367 VVWEPAPSVEAIRERDAQR 385 + E P E E+DA + Sbjct: 361 IQME-IPKCELPTEKDANQ 378 >gi|171315596|ref|ZP_02904831.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] gi|171099267|gb|EDT44026.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] Length = 465 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 134/358 (37%), Positives = 199/358 (55%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV++T +Q A L L D++ A+TGSGKT AF LAL + L + RF Sbjct: 22 LTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTRRFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E +S I R V ++R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDNSKIRQRFYEVTETERLHAVGQLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA ++G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALKREVEWHP 372 >gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia malayi] gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative [Brugia malayi] Length = 462 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 120/358 (33%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + T VQ A L +++D++ A+TGSGKT AF + + LL Sbjct: 31 VTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL + PTRELA Q+G + E L A G+++AV +GGV + L H Sbjct: 91 QKL------FALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKRPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH+ KG N+ LK +V+DEAD +L++ F ++E IL PK+RR ++ Sbjct: 145 VIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERRTYLY 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + D VR+ ++S+ + + + + ++ ++ IL + Sbjct: 205 SATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLIYILNEMAGQ 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AIVFCST AS + +L + F V L G++SQ +R +L + + V + TDVA+ Sbjct: 265 TAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVLVCTDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 RG+D+P +++V++ ++ + ++ +HR GRT RAGR G+++ + Q + ++ ERL Sbjct: 325 RGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVEIYQKIERLI 382 >gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4] gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4] Length = 587 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 168/537 (31%), Positives = 271/537 (50%), Gaps = 43/537 (8%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +ALS+ GY + + +Q A + P L DV+ AQTG+GKT AF + + S + Sbjct: 24 KALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILSKIDLTQ------ 77 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +P AL +APTRELA+QV A G+ V GG S + L+ GAH+VVGT Sbjct: 78 KSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGT 137 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S L +VLDEADEML +GF++D+E IL +P+ +++ +FSAT+ Sbjct: 138 PGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEYKQVALFSATMPG 197 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI ++K Y D V + + S+ S+I R V VA + +A+ +L I+F Sbjct: 198 AIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDFGAMIIFV 257 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L F A++G++ Q +R + ++ G + +ATDVAARG+D+ Sbjct: 258 RTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAARGLDVD 317 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR G + +FV P +++ + E+ R+ + Sbjct: 318 RISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEKATRQPLAEMQ 377 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI----QGDE----KKMVDVLLAKHDPE--KIAA 418 PSV+ + +AQR+ + F DSI D +KM++ +HD IAA Sbjct: 378 L---PSVDDV---NAQRVSK---FGDSITESLTSDNLALFRKMIEDYEQEHDVPLADIAA 428 Query: 419 GFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471 R G P R DD + G + + + Sbjct: 429 ALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDDGPPTRSRGPEGQEL---ATYRI 485 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRT 524 +VG + + ++ + G+ R G I ++PD + VE+ AD ++ LRRT Sbjct: 486 AVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALRRT 542 >gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris PB013-T2-3] gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris PB013-T2-3] Length = 498 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 150/473 (31%), Positives = 240/473 (50%), Gaps = 18/473 (3%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + Q + +A+ GY T +QE + L+ +DV+ AQTG+GKT AFGL + Sbjct: 1 MKFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + +N AL I+PTRELA+Q EL L V V V GG + R+ + Sbjct: 61 EHVDTDNPNIQ------ALIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ I+VGTPGRL DHI + + H++ +VLDEADEML++GF +DIE I+ +P + Sbjct: 115 SLKHHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ P I + + + + V I ++ +D V ++ + + ++ Sbjct: 175 RQTLLFSATMPPEIKRIGEQFMTNPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLI 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 IVF T+ V +K L + + G+L+Q R+ ++ ++G + + Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKNGDLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356 ATDVAARG+D+ + V + ++ S+P++ +HR GRTGRAG G S+ FV P M+ Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEI 354 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEK 415 E+L R + + +P + EA + + A D L K+ + LL HD Sbjct: 355 EKLTRVRMLPL--KPPSAEEAFKGQVASAFNDIDELIAQDSTDRYKEAAEELLESHDATD 412 Query: 416 IAAGFLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466 + A L A P +ITP + R S+ GG+ ++ G+ Sbjct: 413 LVAALLNDMTKEAASEVPVKITPERPLP---RRHHGSKRTDYHGGNHRHYNGN 462 >gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20] Length = 492 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 140/456 (30%), Positives = 239/456 (52%), Gaps = 27/456 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADRILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSKIELFEI 385 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428 P+ I E + L D + I +++ ++ +P ++ L + + GL Sbjct: 386 PT---INENQIIKTLHDAKVSEGIISLYEQLTEIF----EPSQLVLKLLSLQFETSKIGL 438 Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVG 456 P+E TP + + + R+ +R+FK G Sbjct: 439 NQQEIDAIQNPKEKTPKT-SNKKTHQREQARSFKKG 473 >gi|261878837|ref|ZP_06005264.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella bergensis DSM 17361] gi|270334579|gb|EFA45365.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella bergensis DSM 17361] Length = 632 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 139/401 (34%), Positives = 216/401 (53%), Gaps = 16/401 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I A+ E G+VN VQE ++ P L + DV+ AQTG+GKT AFG+ Sbjct: 1 MKTFEELGVSEEIRRAIDELGFVNPMPVQEEVI-PYLLGQGNDVIALAQTGTGKTAAFGI 59 Query: 57 ALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVS 113 L R P AL ++PTREL +Q+ +L +AK G+ + GG S Sbjct: 60 PLLQ-------RTDPTKKETQALILSPTRELCLQIADDLN-AFAKYMDGMHILPVYGGAS 111 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + + R L++G I+V TPGRL D + + ++ VVLDEADEML++GF D I + Sbjct: 112 IEAQIRSLRHGVQIIVATPGRLIDLMNRGVAKLDNVSNVVLDEADEMLNMGFTDSINAVF 171 Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 + P+ R L+FSAT+ I +AK+Y D + + S N ++++ +V D+ Sbjct: 172 EGVPRDRNTLLFSATMGKEIEKIAKSYLNDYKEIVVGSRNEGAENVNHVYYMVNAKDKYL 231 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 A+ I+ Y+ IVFC T+ L + + AL G+LSQQ+R +Q R Sbjct: 232 ALKRIVDYYPNIYGIVFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRKH 291 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+KG S+ +I + Sbjct: 292 ITQLLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSIAIIHTREK 351 Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394 + + + V + P+ E I ++ +++ + + D Sbjct: 352 HKVRSIEKIIGKEFVDDELPAPEEICKKQLYKMMNNIMKTD 392 >gi|221126753|ref|XP_002164824.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] gi|260222162|emb|CBA31453.1| ATP-independent RNA helicase dbpA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 460 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 145/404 (35%), Positives = 220/404 (54%), Gaps = 15/404 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + G+ +T +Q A L L KD++ A+TGSGKT AF L L + L N R+ A Sbjct: 17 LQQLGFDAMTPIQAASLPVALAGKDLIAQAKTGSGKTAAFALPLLAKL---NPRWF---A 70 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV E+ L A+ + V GGV+ +R L+NGAHIVVGTPG Sbjct: 71 VQAMVLCPTRELADQVTVEIRRLARAQDNIKVVTLCGGVATRGQRASLENGAHIVVGTPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D + + L + L +VLDEAD MLD+GF DDI + PK+R+ L+FSAT I Sbjct: 131 RIMDLLEREYLTLEGLNTLVLDEADRMLDMGFFDDIVTVARQCPKERQTLLFSATYPEGI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK + +D ++ + + ++ I+ R V R +A+ +IL + + I FC+T Sbjct: 191 EKLAKQFMQDPQQIKVEAPVADNT-IEQRFFEVDRESRFSAVCSILNHFRPVSTIAFCNT 249 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L F AL G+L Q+ER L + V +ATDVA+RG+D+ +L Sbjct: 250 KQQCNELVDKLVTDGFVAQALHGDLDQRERDQVLAQFANRSCSVLVATDVASRGLDVKEL 309 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 ++VI+ +++ +PE +HR GRTGRAG KG++V + ++ + N VW Sbjct: 310 DIVINVDITPDPEVHVHRIGRTGRAGEKGLAVSLASMREMGAVGKIEQYQNTPSVWH--- 366 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVLLAKHDPE 414 ++ + + R+L P+ I G K+ + DVL A + E Sbjct: 367 KLDELTPTGSGRLL-PPMVTVQIAGGRKEKIRPGDVLGALTNTE 409 >gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL F6-596] gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL F6-596] Length = 526 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 146/444 (32%), Positives = 238/444 (53%), Gaps = 30/444 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 15 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 75 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + +++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 129 TPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M ++R + L Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 368 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA Sbjct: 369 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAA 419 Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443 L++ L + TPV + R Sbjct: 420 MLKM----LAKEPDKTPVHITEER 439 >gi|253686992|ref|YP_003016182.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753570|gb|ACT11646.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 625 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 171/566 (30%), Positives = 268/566 (47%), Gaps = 52/566 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNLKPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV ++ GV V GG + R L+ GA IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRQGAQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + KD V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 370 Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419 P+ E + +R A ++ Q ++ + M LL K P E +AA Sbjct: 371 VELPNAELLGQRRLAKFAAKVQQ------QLESSDLDMYRALLTKLQPQEELDVETLAAA 424 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRF--------------------RDDSRAFKVGGGS 459 L++ + P + P + R F RD R + Sbjct: 425 LLKMAQGE--RPLILPPDPVFRPRREFRDRDDSRGDRRRDPRDSRESRDGDRPQR---RE 479 Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SA 515 R + + + VG E R ++ + I+ + IG I++ + +E+ Sbjct: 480 RRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539 Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKP 541 D + RT L+K + ++ LG +P Sbjct: 540 DLLSHFTRTRILNKPMNMQLLGDAQP 565 >gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 689 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 161/519 (31%), Positives = 261/519 (50%), Gaps = 35/519 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L +D L AQTG+GKT AF L L + + + Sbjct: 48 ALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK----- 102 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L GAHIVVGTP Sbjct: 103 -PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGAHIVVGTP 161 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L++ VLDEADEML +GF DD+ +IL+ +P+ + ++FSAT+ P Sbjct: 162 GRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPM 221 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + T+ Y ++ +V++A N + +V ++D A+ +L +IVF Sbjct: 222 VKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVR 281 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 282 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 341 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 342 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQL 401 Query: 370 EPAPSVEAIR----------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 V A R E++++ + + ++Q + ++V D +AA Sbjct: 402 PQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQ----ESLEV-----DAATLAAM 452 Query: 420 FLRIH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-NFKGSSW--FSLSVG 474 L+ ++ L E P+ RD+ R R G D NF W + L VG Sbjct: 453 LLKRQQGKSPLFYVGE-DPMIAAIERDKNRRKERREDRDNGRGDRNFNTQDWDTYQLQVG 511 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +Q + + ++ L G+ + SIGAI++ T+V++ Sbjct: 512 REQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQL 550 >gi|282879073|ref|ZP_06287833.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC 35310] gi|281298807|gb|EFA91216.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC 35310] Length = 644 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 171/548 (31%), Positives = 275/548 (50%), Gaps = 36/548 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 +K FE + + I A+ E G+V+ VQE ++ L K DV+ AQTG+GKT A+GL Sbjct: 18 LKTFEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP 77 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 L + ++ A+ ++PTREL +Q+ +L+ Y K + V GG S+ Sbjct: 78 LLQKIDVDSKHTQ------AIILSPTRELCLQIADDLKDFAKYIKN-LHVEPVYGGASIV 130 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + L++GA I+V TPGRL D + + H+ VVLDEADEML++GF + I IL Sbjct: 131 TQIHALKHGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAG 190 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P R L+FSAT+S I +AK Y +D + + S N ++++ +V D+ A+ Sbjct: 191 VPDDRNTLLFSATMSNEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYMVNARDKYLAL 250 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ AI+FC T+ L + + AL G+LSQQ+R +Q R Sbjct: 251 KRIVDYYPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVT 310 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ + + EN HRSGRTGRAG+KG S+ +I + + Sbjct: 311 QLLVATDVAARGLDVDDLTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSK 370 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDV----- 406 + + V P+ + I + + + D ++ I DE++ MV++ Sbjct: 371 VRAVEKIIGKEFVDGTLPTAQEICAKQLYKAMHD---IEKIDVDEEQIAPFMVEINRHFE 427 Query: 407 LLAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD-------DSRAFKVGG 457 + K D K ++ F R AP EI SL G DR + +R+ + GG Sbjct: 428 YVDKDDIIKKIVSLTFGRFLDYYANAP-EIEKPSLKRG-DRGEEKGMRGGRKARSERGGG 485 Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517 SR KG +++G +M + + RQ +G I + ++++EV Sbjct: 486 RSRTPEKGYRRLFINLGKDDGFYPGEVMQFINQHVK-GRQQVGHIDLLGKISYIEVPEKD 544 Query: 518 VDLLRRTV 525 + + R++ Sbjct: 545 ANKVMRSL 552 >gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense YUAN-3] gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense YUAN-3] Length = 530 Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 157/512 (30%), Positives = 250/512 (48%), Gaps = 31/512 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ + +Q + L DV+ AQTG+GKT+A+ + S + P Sbjct: 17 KAIDLMGFEEPSQIQTQAIPVILEGNDVIGQAQTGTGKTLAYSAPVISLM-----EHGPH 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA+QV EL + T GG + R+ R LQ G IVV TP Sbjct: 72 QVQ-ALILVPTRELAIQVNDELVRINRFTHFTSIPVYGGQPIDRQIRALQKGVDIVVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHIR ++ SH++ VLDE+DEML++GF DDI+ +LD+ P +R+ L+FSAT+ Sbjct: 131 GRILDHIRRGTVDFSHVRFFVLDESDEMLNMGFIDDIQAVLDTLPAERQSLLFSATMPMQ 190 Query: 193 ITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA+ + K D + IA + + V DR + IL ++AI+FC Sbjct: 191 IRKLAQQHMKPDVKNIVIAKSTLTATLTEQFYFEVKHRDRFETLCRILDVDEPESAIIFC 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + + + V + G++ Q +R N L+ RDG +ATDVAARGID+ Sbjct: 251 RTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFLVATDVAARGIDIE 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 ++ VI+ EL + E+ +HR GRTGRA R G++ ++ +++ R + + + Sbjct: 311 NISHVINYELPEDAESYVHRIGRTGRANRTGIAYSLVTPREYIILKQIERVTHGHIKRKE 370 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGFLRIHRAG 427 P+VE I E + +L + ++ ++ + L ++ D E +AA L+I Sbjct: 371 IPTVEDIYEVKYKNVLTK--VKEELEKNDFEKFKPLASELDDEYNLVDVAAALLKI---- 424 Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487 S + D + + R + G + L+ G K R ++ Sbjct: 425 -------------SFENELNFDYASSEKAREVRQS-AGETRLFLNAGRMDKVTPRDILRF 470 Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 LC +SG R IG I + +F VS+ D Sbjct: 471 LCDNSGFTRNEIGHIDIFDKFSFANVSSSAAD 502 >gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12] gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12] Length = 492 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+++L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMHLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 529 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 137/407 (33%), Positives = 215/407 (52%), Gaps = 14/407 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F +P + + +AL + GYV LT +Q + + D+ AQTG+GKT+AF L Sbjct: 3 FNELPFHESLSKALDKIGYVELTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPTLHR 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 LL+ + + P AL +APTREL +Q+ E + L T + VA IGG + + L Sbjct: 63 LLSAEEE---EALPYALVLAPTRELTIQIAEEAKKLLEFTDLGVATIIGGTDYKSQEQAL 119 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 N A I+V TPGRL D ++ GL++ ++K V+LDEAD M D+GF D+++I +++ Sbjct: 120 GNKACIIVATPGRLIDFVKNHGLSLENIKVVILDEADRMFDMGFVQDLKYIFHKCKNRKQ 179 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILR 240 L+FSAT+S + LA Y D + V+I E ID + + ++ +VN +L Sbjct: 180 SLLFSATLSYEVVRLASKYLNDPIEVHINPEKVITERIDQSLLHLGREEKLPYLVNSLLN 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Y I+F + + ++ + L LS EL Q++R L+ + G+ + IA Sbjct: 240 YPIEGLGIIFTNYKMNIPKIVSALRRFGITATGLSSELDQKKRIRLLRDFKAGKYKYLIA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVA+RGID+ ++++V + +L + EN +HR GRT RAGRKG S+ + ER+ Sbjct: 300 TDVASRGIDIENIDVVYNYDLPQDAENYVHRIGRTARAGRKGQSIGFCSETDYTELERIE 359 Query: 361 REANVSVVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMVD 405 + N + V IRE + + P+F D + EKK D Sbjct: 360 KYLNSKI------PVAEIREEYLEFPKGEFTPVFADEVIPGEKKYQD 400 >gi|288556690|ref|YP_003428625.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] gi|288547850|gb|ADC51733.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] Length = 487 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 190/336 (56%), Gaps = 6/336 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + + +AL Y LT+VQE ++ + EKDV+V AQTGSGKT A+ + L ++ E Sbjct: 17 ISKEVQKALDLLNYKKLTNVQEKVVPVAIAEKDVIVKAQTGSGKTAAYAIPLCEKVIWEE 76 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 ++ P AL + PTRELA QV E+ + V A G S R++ +L+ H Sbjct: 77 NK------PQALVLTPTRELAAQVKEEIINIGRFKRVKAAAVYGKQSYERQKIELKQKNH 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV GTPGR+ DHI L+ ++++ +V+DEAD+ML++GF D +E I+ P R ++FS Sbjct: 131 IVTGTPGRVLDHIEKNSLDTTNIRFLVIDEADQMLNMGFIDQVEAIIARIPANRVTMLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT + L+K + + I S +I++ + V ++ + + +L + Sbjct: 191 ATFPYGVEELSKRHMSLPEYIEINSTEASRPNINHAIIEVEADEKTDVLKKVLITENPDS 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+FC T+ V + K L + V L G + Q++R + + ++G R +AT VA R Sbjct: 251 CIIFCQTQVEVDKLEKSLLRSQYPVEKLHGGMKQEDRFDVMDRFKEGAFRYLVATGVAGR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 GID+ D++LVI+ ++ + EN +HR GRTGRAG+KG Sbjct: 311 GIDVADIDLVINYDVPAEKENYVHRIGRTGRAGKKG 346 >gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp. zooepidemicus] gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp. zooepidemicus] Length = 538 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 124/348 (35%), Positives = 199/348 (57%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L +DV+ AQTG+GKT AFGL + + Sbjct: 7 NLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTLNKIRTA 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 DNTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P R+ L+F Sbjct: 121 HVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + KD V + ++ + ++D V V ++ + + ++ + Sbjct: 181 SATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10] gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10] Length = 492 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 142/470 (30%), Positives = 244/470 (51%), Gaps = 28/470 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFMR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDIGG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428 P+ I E + L D + I +++ ++ +P ++ L + + GL Sbjct: 386 PT---INENQIIKTLHDAKVSEGIISLYEQLTEIF----EPSQLVLKLLSLQFETTKIGL 438 Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 P+E TP + + + + +R+FK G RD +++ S Sbjct: 439 NQQEIDAIQNPKEKTPKT-SNKKTHQHEQARSFK-KGQHRDRHPKTNYHS 486 >gi|158333359|ref|YP_001514531.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017] gi|158303600|gb|ABW25217.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017] Length = 574 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 158/507 (31%), Positives = 256/507 (50%), Gaps = 35/507 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E GY + + +Q + P L +D+L AQTG+GKT AF L L S L Sbjct: 20 QAVEEVGYESPSPIQAQSIPPLLAGRDLLGQAQTGTGKTAAFALPLLSQLDLSQ------ 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P L +APTRELA+QV ++ YA+ G +A GG ++ + R L+ G H+VVG Sbjct: 74 AHPQILVLAPTRELAIQVAEAMQT-YARHLPGFHIATLYGGQNISTQLRQLRRGVHVVVG 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ L + +L VVLDEADEML +GF +D+E ILD +PK R++ +FSAT+ Sbjct: 133 TPGRLIDHLLRGTLKLENLSTVVLDEADEMLRMGFIEDVEKILDETPKGRQVALFSATMP 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI +A+ + D V + I S+ S + R V + +A+ IL + +VF Sbjct: 193 SAIRRVAQRHLNDPVEIKIKSKTATVSTVTQRYWQVRGLSKLDALTRILEVEDFEAMLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + LSG++SQ R ++ ++ GR + +ATDVAARG+D+ Sbjct: 253 VRTKVMAAELAEKLEARGYSSAVLSGDISQPLREKTIERIKAGRLDIIVATDVAARGLDV 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + VI+ ++ + E +HR GRTGRAGR+G ++ + +R + + + Sbjct: 313 ERISHVINYDIPYDTETYVHRIGRTGRAGRQGDAILFVSSREKRMLRSIEQATRQPIQPM 372 Query: 371 PAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEK------IAA--GFL 421 PS I +R RI+Q + D+I+ + + L++ + E+ IAA +L Sbjct: 373 QIPSHADIADR---RIVQFKQVITDTIEDQDLDFFEDLISNYQQEQDLSLREIAASLAYL 429 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWFSLSVGSKQ 477 L P+E D D A + + D K S F + VG + Sbjct: 430 VQKDKPLVPPKE----------DLSSDPGHAVQTSNWAADLGKPSHQQMQLFRIEVGRQH 479 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRV 504 + + + ++ + + + IG I++ Sbjct: 480 EVKPKNIVGAIANEVNLAPRYIGQIKL 506 >gi|89902343|ref|YP_524814.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118] gi|89347080|gb|ABD71283.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118] Length = 421 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 195/334 (58%), Gaps = 4/334 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S++ + T +Q + P L+ +D+L SAQTGSGKT AF L L A + SP Sbjct: 15 AISDQAWSAPTPIQAVAMGPALQGRDLLASAQTGSGKTAAFALPLLQQFEAAVPQ-SPRR 73 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTREL+ QVG E+ +L + + V++ GGVS++ + L+ GA IVV T Sbjct: 74 L-RALILVPTRELSTQVGEEIRFLGQHLPRALKVSIVFGGVSINPQMLRLRGGADIVVAT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D I L++S + +VLDEAD +LDLGF +++ IL P +R+ L FSAT P Sbjct: 133 PGRLLDLIDHNALSLSGVATLVLDEADRLLDLGFAEELNRILALLPVQRQNLFFSATFPP 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 A+ TLA+ +D VR+ +A E + DI+ R + V + R + +++ H +VF Sbjct: 193 AVQTLAQVLLRDPVRIEVAPEPQTQPDIEQRVIEVDAAQRTQLLRHLMAQHHWSRVLVFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L + GELSQ +R+ L + R +V +ATDVAARG+D+ Sbjct: 253 ATKHAAEMVADKLRKARINAEPFHGELSQGKRTQVLADFKASRLKVVVATDVAARGLDIA 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L +V++ +L + + +HR GRTGRAG KG+++ Sbjct: 313 QLPVVVNFDLPRSALDYIHRIGRTGRAGEKGVAL 346 >gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii] gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii] gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii] gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii] Length = 445 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 129/351 (36%), Positives = 206/351 (58%), Gaps = 19/351 (5%) Query: 8 PQVIGEALSERGYVNLTSVQE-AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65 P+++ AL+++ +NL VQ+ A+ P ++ +D + A+TG+GKT+AFGL + T+ E Sbjct: 13 PEIV-RALAQKNIINLFPVQQSAVYQPAMKGRDFIARAKTGTGKTLAFGLPILHTITVER 71 Query: 66 ---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121 R P P + +APTRELA QV +EL + + VCI GGVS+ +RR L Sbjct: 72 REATSRTQPG-CPRCIVMAPTRELAKQVEKELT---STAPHLTLVCIYGGVSIESQRRSL 127 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + +VVGTPGR+ D ++ L ++ +K +VLDEAD+ML GF +D+E I++ PK+R+ Sbjct: 128 ERPIDVVVGTPGRVIDMLQRGSLLLNRVKFMVLDEADQMLATGFAEDVEKIMERLPKQRQ 187 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-----IV 236 +MFSAT+ + L + + +D + V++ +N + + SD + +V Sbjct: 188 TMMFSATMPSWVKNLLRRFMQDPLVVDLVGDNDEKLAEGIKLYSCEASDYNKGPLLKELV 247 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 N Y IVF T+ + ++ + AL G++ Q +R L RDGR Sbjct: 248 N--SYGKGGKVIVFAKTKRDTHNVAQAMSRSV-PCEALHGDIPQFQRERTLSGFRDGRFS 304 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 V +ATDVAARG+D+P+++LVIH E+ + E +HRSGRTGRAG+KG+++ + Sbjct: 305 VLVATDVAARGLDIPNVDLVIHYEVPGDSETFVHRSGRTGRAGKKGVAILM 355 >gi|34498296|ref|NP_902511.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] gi|34104150|gb|AAQ60509.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] Length = 420 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 142/347 (40%), Positives = 198/347 (57%), Gaps = 13/347 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++ AL E+ YV T++Q A + L+ DVL +AQTGSGKT AF L L L Sbjct: 10 PDLVQSAL-EQDYVRPTAIQSAAIPAILQGGDVLATAQTGSGKTAAFCLPLLQQWLD--- 65 Query: 68 RFSPAS---APLALAIAPTRELAVQVG---RELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 SP + P AL + PTRELA QVG R+L + + VAV GGVS++ + L Sbjct: 66 --SPRAILRQPRALILLPTRELAAQVGDILRDLAQSLPRK-LKVAVVYGGVSINPQMMAL 122 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA IVV TPGRL D + L +S +K +VLDEAD +LDLGF D++ +LD P R+ Sbjct: 123 RGGADIVVATPGRLLDLLDHNALRLSAVKTLVLDEADRLLDLGFADELGSVLDRLPPARQ 182 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSAT PA+ LA+ K +R++I DI RA+ V R + ++L Sbjct: 183 NLLFSATFPPAVRALAEKLLKQPLRIDIEHAAATAPDIRQRAIEVDAGKRTLLLRHLLAT 242 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 A+VF ++R + R L + AL G+ SQ +R AL ++ GR RV +AT Sbjct: 243 RDWDKALVFVASRQAADRVADKLRRNGVPAAALHGDCSQGQRGQALADLKSGRLRVLVAT 302 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARGID+ L LV++ +L +P + HR GRTGRAG +G ++ + Sbjct: 303 DVAARGIDIARLPLVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFV 349 >gi|167574569|ref|ZP_02367443.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis C6786] Length = 465 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 147/396 (37%), Positives = 213/396 (53%), Gaps = 15/396 (3%) Query: 16 SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75 ++ GYV++T +Q A L L D++ A+TGSGKT AF L L + L A RF Sbjct: 24 TQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLPLLARLDAR--RFDVQ--- 78 Query: 76 LALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 A+ + PTRELA QV +E+ L A+ V V GG + + L++GAHIVVGTPGR Sbjct: 79 -AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGR 137 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + DH+ L + L +VLDEAD MLD+GF DDI + PK+R+ L+FSAT I Sbjct: 138 IMDHLERGSLALGALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPDGIA 197 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 L++ + ++ V + E + S I R V +R +A+ +L ++ + + FC+T+ Sbjct: 198 KLSQQFLRNPKEVKL-EERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLAFCNTK 256 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 VL F +AL GEL Q+ER L + V +ATDVAARG+D+ LE Sbjct: 257 QQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLE 316 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 317 AVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWHPLAE 376 Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407 +EA E DA L P+ I G K+ + DVL Sbjct: 377 LEA--ESDAP--LLPPMETLQILGGRKEKIRPGDVL 408 >gi|167567410|ref|ZP_02360326.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis EO147] Length = 465 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 147/396 (37%), Positives = 213/396 (53%), Gaps = 15/396 (3%) Query: 16 SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75 ++ GYV++T +Q A L L D++ A+TGSGKT AF L L + L A RF Sbjct: 24 TQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLPLLARLDAR--RFDVQ--- 78 Query: 76 LALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 A+ + PTRELA QV +E+ L A+ V V GG + + L++GAHIVVGTPGR Sbjct: 79 -AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGR 137 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + DH+ L + L +VLDEAD MLD+GF DDI + PK+R+ L+FSAT I Sbjct: 138 IMDHLERGSLALGALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPDGIA 197 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 L++ + ++ V + E + S I R V +R +A+ +L ++ + + FC+T+ Sbjct: 198 KLSQQFLRNPKEVKL-EERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLAFCNTK 256 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 VL F +AL GEL Q+ER L + V +ATDVAARG+D+ LE Sbjct: 257 QQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLE 316 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 317 AVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWHPLAE 376 Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407 +EA E DA L P+ I G K+ + DVL Sbjct: 377 LEA--ESDAP--LLPPMETLQILGGRKEKIRPGDVL 408 >gi|154497003|ref|ZP_02035699.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC 29799] gi|150273402|gb|EDN00530.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC 29799] Length = 400 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 209/363 (57%), Gaps = 11/363 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ ++GYV T VQ + + KDV+ A TG+GKT AFG+ + + E+D Sbjct: 23 VMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGTGKTFAFGIPMVEHIDPESD--- 79 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129 A AL +APTRELA+Q+ EL L V +VC+ GG + ++ L+ IVV Sbjct: 80 ---AVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTLKKHPQIVV 136 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ + + + ++ VVLDEAD MLD+GF D+ ILD ++ + +FSATI Sbjct: 137 ATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKNLGLFSATI 196 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAI 248 S + ++ YQ+D V + + + DI YR L D+ +V +L + G + AI Sbjct: 197 SREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALLTHGGYERAI 256 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 FC+T+ R + +L A+ G++ Q+ R LQ R+G+ RV +ATDVAARG+ Sbjct: 257 AFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVLVATDVAARGL 316 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR--EANV 365 D+ D+++V + ++ E +HR GRTGRA R G++ V+ Q + E++ + +A++ Sbjct: 317 DIDDVDVVFNYDVPDEIEYYIHRIGRTGRAKRHGVAYSLVVGITEQMKMEQIAKNTKADI 376 Query: 366 SVV 368 +V+ Sbjct: 377 TVL 379 >gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC 49188] Length = 498 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 25 PKVLA-AVEAAGYSAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 83 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123 R A P L + PTRELA QV E + K GV VA+ IGGVS + R L+ Sbjct: 84 R---ARMPRTLILEPTRELAAQV----EENFTKYGVNHRLNVALLIGGVSFDEQERKLER 136 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L Sbjct: 137 GADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 196 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241 FSAT+ P IT L + + RV +A + + R V + D D V +++R Sbjct: 197 FFSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSSKKDWDKRAVLRDLVRA 256 Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G KNAI+FC+ + VS + L H F AL G++ Q+ R L ++G+ ++ + Sbjct: 257 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLANFKEGKLQLLV 316 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 317 ASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIV 365 >gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii DSM 2661] gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus jannaschii DSM 2661] Length = 367 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 207/347 (59%), Gaps = 20/347 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64 N+ I A+ +G+ T +Q ++ L E +++ A+TGSGKT +F + L L+ Sbjct: 12 NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE-LVN 70 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 EN+ A+ + PTRELA+QV E+E L + +A GG +++ + + L+N Sbjct: 71 ENNGIE------AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN- 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A+IVVGTPGR+ DHI LN+ ++K +LDEADEML++GF D+E IL++ K +R+L+ Sbjct: 124 ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241 FSAT+ I LAK Y D + + + +++I+ V V ++R A+ +L+ + Sbjct: 184 FSATMPREILNLAKKYMGDYSFI----KAKINANIEQSYVEVNENERFEALCRLLKNKEF 239 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +G +VFC T+ +L + F+ A+ G+LSQ +R +++ + + R+ IAT Sbjct: 240 YG----LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT 295 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DV +RGID+ DL VI+ L NPE+ +HR GRTGRAG+KG ++ +I Sbjct: 296 DVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISII 342 >gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 486 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 209/377 (55%), Gaps = 16/377 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L+ D++ AQTG+GKT AFG+ L + + D+ +AL Sbjct: 2 GFEEATPIQAKTIPLALQGHDLIGQAQTGTGKTAAFGVPLINKIDTAADKI------VAL 55 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELA+QV E+ L G+ GG + ++ R L+ I++GTPGRL DH Sbjct: 56 VMCPTRELAIQVAEEISKLGRFKGIRSLPIYGGQDIVKQIRALKKKPQIIIGTPGRLLDH 115 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I K + + ++ VVLDEADEMLD+GF DDI+ IL P++R ++FSAT+ P I LA Sbjct: 116 INRKTIKLEGVETVVLDEADEMLDMGFMDDIQSILSQVPEERHTMLFSATMPPNIQKLAH 175 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + ++ V++ + I + V + A+ +L + AI+F T+ V Sbjct: 176 QFLRNPQHVSVIPKQVSAPLIAQAYIEVHEKQKFEALSRLLDMEAPELAIIFGRTKRRVD 235 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 ++ L + + L G+LSQ +R N ++ RDG V +ATDVAARG+D+ + VI+ Sbjct: 236 ELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVIN 295 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA--ERLFREANVSVVWEPAPS- 374 +L +PE+ +HR GRTGRAG++G + FV P+ + E++ R + +P PS Sbjct: 296 FDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIEKVTRH---KISRKPLPSL 352 Query: 375 ---VEAIRERDAQRILQ 388 +E ++ A+RIL+ Sbjct: 353 AEAMEGKQKMTAERILE 369 >gi|304415003|ref|ZP_07395797.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus Regiella insecticola LSR1] gi|304283089|gb|EFL91508.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus Regiella insecticola LSR1] Length = 464 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 129/343 (37%), Positives = 193/343 (56%), Gaps = 11/343 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY ++T +Q A L L+ KDV A+TGSGKT AFG+ L + E Sbjct: 20 LNALGYSSMTPIQAATLPAILKGKDVRAQAKTGSGKTAAFGIGLLDKIAVEQ------FV 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA Q+ +EL L + + ++ +C GG S+ + L + H VVGTP Sbjct: 74 TQALILCPTRELADQISKELRRLARFTQNIKILTLC-GGQSIGCQLYSLVHAPHFVVGTP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ +H+R L +++LK +VLDEAD MLD+GF D I+ I+D +PK R+ L+FSAT + Sbjct: 133 GRIQEHLRKHTLVLTNLKVLVLDEADRMLDMGFNDAIDNIIDYAPKTRQTLLFSATYPDS 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q + V + S + + I+ R ++ IL+++ + +VFC+ Sbjct: 193 IEQISNRIQHQPLSV-VVSPQKNETAIEQLFYESTNEKRLPLLIKILKHYQPDSCLVFCN 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R + L V+AL G+L Q ER + R+ +ATDVAARG+D+ Sbjct: 252 TKLDCQRLYQALKSCQMSVLALHGDLDQHERDQVWVRFANHSCRILVATDVAARGLDIKQ 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 L LV++ E++ +PE +HR GRTGRAG G +V PQ M R Sbjct: 312 LALVVNFEVAFDPEVYIHRIGRTGRAGIGGCAVTLCTPQEMHR 354 >gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567] gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567] Length = 582 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 193/354 (54%), Gaps = 8/354 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67 Q I +AL+ G V+ +QE L L D++ A+TG+GKT+ FGL ++ +D Sbjct: 32 QDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQRVVGRDDD 91 Query: 68 ---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 AP AL + PTRELA+QVG +L VA GGV + L G Sbjct: 92 QWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEPQVEQLTKG 151 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +VVGTPGRL D + L ++ +K VVLDEADEMLDLGF +E I+ P R+ ++ Sbjct: 152 LEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYLPTDRQTML 211 Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVL--VALSDRDNAIVNILRY 241 FSAT+ + T+A+ Y + ++ A E+ + R V+ V D+D + ILR Sbjct: 212 FSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDEMLGRILRA 271 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 HG ++F T+ +R L F L G+L+Q R AL+ R+G+ + +AT Sbjct: 272 HGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILVAT 331 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 DVAARGID+ D+ VI+ + + + LHR+GRTGRAG +G +V FV +++ R Sbjct: 332 DVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWEDIAR 385 >gi|257463152|ref|ZP_05627553.1| ATP-dependent RNA helicase [Fusobacterium sp. D12] gi|317060745|ref|ZP_07925230.1| ATP-dependent RNA helicase [Fusobacterium sp. D12] gi|313686421|gb|EFS23256.1| ATP-dependent RNA helicase [Fusobacterium sp. D12] Length = 528 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 159/511 (31%), Positives = 255/511 (49%), Gaps = 35/511 (6%) Query: 11 IGE----ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAE 65 IGE ALS++GY T +Q + L EKD++ AQTG+GKT AF L + + Sbjct: 15 IGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPILENI-EH 73 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D+ + + PTRELA+QV E+ L + + + GG S+ +R+ L+ GA Sbjct: 74 QDKIQ------GIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLRTGA 127 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ D I K L + LK +LDEADEML++GF +++E IL+++ + +RML F Sbjct: 128 DIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRMLFF 187 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +AK + KD + + + D V D+ A+ I+ Sbjct: 188 SATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRIIDLAEDF 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ V+ L + + L G++ Q R L+ + + + +ATDVAA Sbjct: 248 YGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKARKINILVATDVAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RGID+ DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ R Sbjct: 308 RGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQRIVK 366 Query: 365 VSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 + E P V+ + + +I + D + L+ KK+ LL K + E I A L+ Sbjct: 367 TEIRKEQVPEVKDVIQAKKFQIQKDIDEILLEGEYDKFKKLAQDLLKKEEAENIVASLLK 426 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 + A E++ S + + S VG G F +++G K A+ Sbjct: 427 L------AYEDVLDES------NYNEISSTKTVGSGKARLF-------VALGRKDGMTAK 467 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 L+ + + + + + I + V +F+ V Sbjct: 468 KLVEKVMKVAKVQDKKIRNVEVYEAFSFITV 498 >gi|290894075|ref|ZP_06557049.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071] gi|290556419|gb|EFD89959.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071] Length = 470 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 190/341 (55%), Gaps = 13/341 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T VQ+A++ L +D++ +QTGSGKT AF + +A + E ++ Sbjct: 10 IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELA+QV E + V A G +++ +L HIVVG Sbjct: 68 ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PK+R+ L FSAT+ Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ D + + +ASE V + +++ + ++L +AI+F Sbjct: 184 EEMQDLIKRYQDDPMVIEMASEKTN----PIFHVEMQTDNKEKTLKDVLITENPDSAIIF 239 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T +L + + G L Q++R A+ + G++R IATDVA RGID+ Sbjct: 240 CNTKNQVDELTDLLD---VKANKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ++ LVI+ +L EN +HR GRTGRAG+ G ++ + N Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 337 >gi|15644875|ref|NP_207045.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 26695] gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter pylori 26695] Length = 492 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R +++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis] Length = 496 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 213/383 (55%), Gaps = 13/383 (3%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ EA + + + T VQ + L+ +DV+ A+TGSGKT AF L + LL R Sbjct: 72 VLCEACKQLNWTDPTKVQIEAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEHPQRL 131 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA Q+ + E L A G+ VAV +GGV + + L H++V Sbjct: 132 ------FALVLTPTRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVIV 185 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P++R+ +FSAT Sbjct: 186 ATPGRLVDHLENTKGFSLRSLKYLVMDEADRILDMDFESEVNKILQVIPRERKTYLFSAT 245 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ +T L + +D V+V ++S+ + + + + +D +V IL K+ I Sbjct: 246 MTKKVTKLQRASLQDPVKVEVSSKYQTVDKLQQHYIFIPQKFKDCYLVYILNEMAGKSCI 305 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF ST A+ R +L F V L G++SQ +R AL + + IATDVA+RG+ Sbjct: 306 VFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNKFKAKDRSILIATDVASRGL 365 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANV 365 D+P ++LVI+ ++ ++ ++ +HR GRT RAGR G+S+ + Q + +R E L + + Sbjct: 366 DIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRIEYLLGK-QL 424 Query: 366 SVVWEPAPSVEAIRER--DAQRI 386 + P V ++ ER +A RI Sbjct: 425 PLFKTEEPEVLSLLERVTEANRI 447 >gi|212224191|ref|YP_002307427.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1] gi|212009148|gb|ACJ16530.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1] Length = 403 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 127/357 (35%), Positives = 203/357 (56%), Gaps = 16/357 (4%) Query: 4 FENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALAS 60 FEN+ + A+ +G+ T +Q+ ++ L + D++ +QTG+GKT AF L + Sbjct: 3 FENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPIIE 62 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + A+ +APTRELA+QV E++ L + V V GG + + R Sbjct: 63 AIDEKEKSVQ------AIILAPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRA 116 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G H+VVGTPGR+ DHIR L++S +K +LDEAD MLD+GF DDIE I +PKK+ Sbjct: 117 LERGTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKK 176 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R+LMFSAT+ I LA+ Y D + ++S+ ++ + V + + + + IL Sbjct: 177 RVLMFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKILS 236 Query: 241 --YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 ++G IVFC+T+ ++ L + + AL+G++SQ R + R R+ Sbjct: 237 DDFYG----IVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRIL 292 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 +ATDVAARG+D+ D+ +++ L E+ +HR GRTGR G+KG +V F++P +R Sbjct: 293 VATDVAARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKR 349 >gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51] gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51] Length = 576 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 203/357 (56%), Gaps = 10/357 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 37 ILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK-- 94 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVV Sbjct: 95 ----PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVV 150 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ Sbjct: 151 GTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATM 210 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P + + + + +D V++A N+ + ++ + +V ++D A+ +L +IV Sbjct: 211 PPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIV 270 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D Sbjct: 271 FVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLD 330 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 +P + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 331 VPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387 >gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7] gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7] Length = 455 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 130/346 (37%), Positives = 197/346 (56%), Gaps = 4/346 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66 P V+ +A++E GY T +Q + + +DV+ +AQTG+GKT AF L + L+ N Sbjct: 21 PSVL-QAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPILHRLMQFAN 79 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 SPA P+ AL + PTRELA QV + T + V GGV + +R L+ G Sbjct: 80 TSASPARHPVRALILTPTRELADQVADSVTTYAKFTPLRSTVVFGGVDIGPQRDALRRGC 139 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ K +N+S + +VLDEAD MLD+GF D++ I+ P KR+ L+F Sbjct: 140 EILIATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPAKRQGLLF 199 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I L ++Y + + +A+ N + A +A SD+ A+V++++ G Sbjct: 200 SATFSNEIRKLGRSYLSNPAEIEVAARNATADTVTQIAYPLAGSDKRAAVVHLVKSRGFN 259 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF +T+ SR + L + ++ G+ SQ +R AL + G V +ATDVAA Sbjct: 260 QVIVFSNTKIGTSRLARELVRDGVKAESIHGDKSQLDRMKALDAFKAGELEVLVATDVAA 319 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 RG+D+ + VI+ +L N E+ +HR GRTGRAG G ++ F P+ Sbjct: 320 RGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGNTGEAIAFFTPE 365 >gi|167921338|ref|ZP_02508429.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BCC215] Length = 465 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 199/364 (54%), Gaps = 8/364 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 23 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + RV + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F V+AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375 Query: 374 SVEA 377 ++A Sbjct: 376 ELKA 379 >gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST196] gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis KBAB4] gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST196] Length = 538 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 136/433 (31%), Positives = 234/433 (54%), Gaps = 16/433 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + D Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKD----- 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + IAPTRELA+QVG EL L V + GG ++R+ R L+ HI+VGTP Sbjct: 70 -AVQGIVIAPTRELAIQVGEELYKLGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AI+F Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + ++ +PE+ +HR GRTGRAG+KG+++ + + + + R V A Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEA 368 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 P+++ E QR++ + L +I+ D K++ + +L ++D + A L++ + Sbjct: 369 PTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAALKM----M 422 Query: 429 CAPEEITPVSLVS 441 + TP++L S Sbjct: 423 TKEPDTTPIALTS 435 >gi|34539956|ref|NP_904435.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83] gi|34396267|gb|AAQ65334.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas gingivalis W83] Length = 604 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 138/374 (36%), Positives = 208/374 (55%), Gaps = 23/374 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE I + +A++E G+ VQE ++ L E D++ AQTG+GKT AFGL Sbjct: 1 MKTFEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115 L + R P AL + PTREL +Q+ +L Y+K + V + GG + Sbjct: 61 LLQKIDLSGGR------PQALVLCPTRELCLQIADDLNS-YSKYLSDVHILPVYGGTPID 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ G IVV TPGRL D +R + +++S + VVLDEADEML++GF +D+E IL Sbjct: 114 AQIRALRRGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILAD 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P +R +L+FSAT+ I+ +A +Y KD + I ++N +++I + +V+ + A+ Sbjct: 174 IPSERHLLLFSATMPKEISKIATSYMKDPKEIVIGNKNEGNANIKHLYYMVSARHKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I Y+ IVFC TR L + + +L G+LSQ +R +Q R Sbjct: 234 KRIADYYPNIYGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNL 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-------- 347 ++ +ATDVAARG+D+ DL VIH L + E+ HRSGRT RAG+ G+S+ + Sbjct: 294 QLLVATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGK 353 Query: 348 ---IPQNMQRRAER 358 I + MQ++ ER Sbjct: 354 IKNIERTMQKQIER 367 >gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] Length = 654 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 127/352 (36%), Positives = 199/352 (56%), Gaps = 10/352 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V T +Q A + L D L AQTG+GKT AF L + + + + Sbjct: 46 ALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLNKVDLSQHK----- 100 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAHIVVGTP Sbjct: 101 -PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 159 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I K L + + VLDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 160 GRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPI 219 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + ++ R+++A ENR S ++ + +V ++D A+ +L +IVF Sbjct: 220 VKEIVDRFLRNPARIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETEDTDASIVFVR 279 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 280 TRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARGLDVPR 339 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361 + V + ++ + E+ +HR GRTGRAGR G ++ ++ N M R ER+ + Sbjct: 340 ITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTIERVTK 391 >gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter pylori B38] gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter pylori B38] Length = 492 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R +++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC 33861] gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC 33861] Length = 435 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 122/335 (36%), Positives = 186/335 (55%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL GY N T +QE + + KD+L AQTG+GKT AF + + L ++ + Sbjct: 29 ILKALDASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPILQMLTYSKEKTA 88 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA+Q+ + + + V GGV +R L+ G I++ Sbjct: 89 QKRI-RTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDALRKGIDILIA 147 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D +++ L+ VLDEAD MLD+GF D++ ++ PKKR+ L+FSAT+ Sbjct: 148 TPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKRQTLLFSATMP 207 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + +D +V + E+ I V+ SD+ + + ++L+ ++ +VF Sbjct: 208 AEIQKLASHILEDPSKVEVTPESTTAEKIQQSVYFVSKSDKRHLLTHLLKSENIEHTLVF 267 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ R K LA+ Q A+ G SQ R NAL +D + RV +ATD+AARGID+ Sbjct: 268 SRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALNNFKDRKLRVLVATDIAARGIDI 327 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DL VI+ +L + PE+ +HR GRTGRAG+ G ++ Sbjct: 328 DDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAI 362 >gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931] gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931] Length = 580 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 193/354 (54%), Gaps = 8/354 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67 Q I +AL+ G V+ +QE L L D++ A+TG+GKT+ FGL ++ +D Sbjct: 32 QDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQRVVGRDDD 91 Query: 68 ---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 AP AL + PTRELA+QVG +L VA GGV + L G Sbjct: 92 QWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEPQVEQLTKG 151 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +VVGTPGRL D + L ++ +K VVLDEADEMLDLGF +E I+ P R+ ++ Sbjct: 152 LEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYLPTDRQTML 211 Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVL--VALSDRDNAIVNILRY 241 FSAT+ + T+A+ Y + ++ A E+ + R V+ V D+D + ILR Sbjct: 212 FSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDEMLGRILRA 271 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 HG ++F T+ +R L F L G+L+Q R AL+ R+G+ + +AT Sbjct: 272 HGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILVAT 331 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 DVAARGID+ D+ VI+ + + + LHR+GRTGRAG +G +V FV +++ R Sbjct: 332 DVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWEDIAR 385 >gi|195977782|ref|YP_002123026.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 538 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 124/348 (35%), Positives = 199/348 (57%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L +DV+ AQTG+GKT AFGL + + Sbjct: 7 NLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTLNKIRTA 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 DNTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P R+ L+F Sbjct: 121 HVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + KD V + ++ + ++D V V ++ + + ++ + Sbjct: 181 SATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 603 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 155/525 (29%), Positives = 257/525 (48%), Gaps = 37/525 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L +GY T +Q+A + + +D+L AQTG+GKT AF L L + S Sbjct: 64 KTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLLERI------NSKE 117 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L + PTRELA+QV + + + + GG + L+ G I+VGT Sbjct: 118 RNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYSLKRGVEIIVGT 177 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHIR LN L+ +VLDEADEML +GF DDIE+IL+ P +R+M++FSAT+ P Sbjct: 178 PGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMVLFSATMPP 237 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+K Y +D + I ++ ++ I + V S + + +L + + I+F Sbjct: 238 EIRKLSKRYLRDPAEITIKAKKKEAQLIRQHYITVQNSYKLEVLRRVLELNYGEGVIIFA 297 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A + + L V L+G++ Q R ++ +R G + +ATDVAARG+D+ Sbjct: 298 RTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVATDVAARGLDVE 357 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LVI+ ++ + E +HR GRTGRAGR G ++ I + L R S+ Sbjct: 358 RIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERSYLNNLERAVGQSIERME 417 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHDPE--------KIAAGF 420 P+ E+I Q+I +D L S + +E ++ ++ + + E +AA Sbjct: 418 IPNNESINNHRIQKIKRDLLTTASQKRKDQEETNLIKEVINEIESELEITPKEIALAAIN 477 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDS------------RAFKVGGGSRDNFKGSSW 468 L I + L T S ++ +RFR + +G +D + Sbjct: 478 LSIGESPLLIN---TDESWINQAERFRKSNDRRDNRGRSRRRNDLDIGTTEKDKER---- 530 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 F + VG + + + ++ + SG+N + IG I++ + V++ Sbjct: 531 FRVDVGHRDRVKPGNIVGAIANESGLNGRMIGRIQIFESYSLVDL 575 >gi|16126090|ref|NP_420654.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15] gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000] gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter crescentus CB15] gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000] Length = 517 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 126/339 (37%), Positives = 190/339 (56%), Gaps = 6/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ GY T +Q + L +DVL AQTG+GKT AF L L L + + A Sbjct: 15 QAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDRLQSGRAK---A 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL IAPTRELA QV E T + A+ IGGVS + + L G +++ TP Sbjct: 72 RMPRALVIAPTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQEKKLDRGVDVLIATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P K++ L FSAT+ P Sbjct: 132 GRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249 IT L K + +D VR+ +A +++I V V SD + A+ ++ G + IV Sbjct: 192 ITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIEKAGIETGIV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+ + V K L H + + G+L Q +R L R G ++ +A+DVAARG+D Sbjct: 252 FCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVASDVAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P + V + ++ + ++ +HR GRTGRAGR G++ ++ Sbjct: 312 IPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLV 350 >gi|304557826|gb|ADM40490.1| Cold-shock DEAD-box protein A [Edwardsiella tarda FL6-60] Length = 621 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 171/554 (30%), Positives = 272/554 (49%), Gaps = 50/554 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q A + L +DVL AQTGSGKT AF L L + + Sbjct: 17 IIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNI-------D 69 Query: 71 PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AP L +APTRELAVQV + ++ G+ V GG + R L+ G IV Sbjct: 70 PSLKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLRALRQGPQIV 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL DH++ L+++ L+ +VLDEADEML +GF +D+E I+ P + + +FSAT Sbjct: 130 VGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI + + + + V I S DI V ++ A+V L AI Sbjct: 190 MPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFLEAEDFDAAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 250 IFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 310 DVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIERTMKLTIP 369 Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418 P+ E + R A R+ Q L+S D+ + LLAK P E +AA Sbjct: 370 EVELPNAELLSTRRLAKFAARVQQQ---LESSDLDQYR---ALLAKLQPEDEQDMETLAA 423 Query: 419 GFLRI---HRAGLCAPEEIT--------PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 L++ R + P+ + G DR R + R +VG Sbjct: 424 ALLKMAQGERPLILPPDPVVERRPRREFRERDERGGDRPRRERR--EVG--------DME 473 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523 + + VG E R ++ + I+ + IG IR+ + +E+ D + R Sbjct: 474 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGDLLTHFTR 533 Query: 524 TVKLDKGIQLKYLG 537 T L+K + ++ +G Sbjct: 534 TRILNKPMNMQLIG 547 >gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44] gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44] Length = 527 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 139/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R N Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMN- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ D K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIESDNLSYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|145300612|ref|YP_001143453.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp. salmonicida A449] gi|142853384|gb|ABO91705.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp. salmonicida A449] Length = 459 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 130/351 (37%), Positives = 202/351 (57%), Gaps = 8/351 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + E L+ GY+ +T +Q L L KD++ A+TGSGKT AF L L + L Sbjct: 10 NLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFALGLLAKLNVN 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124 AL + PTRELA QV +E+ L A V + GG + L G Sbjct: 70 RLEVQ------ALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTQTAPQSATLGFG 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHI VGTPGR+ H+ L +S LK +VLDEAD MLD+GF ++I ++ +P++R+ L+ Sbjct: 124 AHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEEINRVISYAPEQRQTLL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT I +++ Q++ V V++ S + + S I+ + V R +A+ +L ++ Sbjct: 184 FSATYPEGIAQMSRGVQRNPVEVSVESLH-EGSAIEQKLYEVPAGQRLDALTWLLSHYQP 242 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VFC+T+ + + LA F +AL+G+L Q+ER L +G A + +ATDVA Sbjct: 243 ASCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDVA 302 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ARG+D+ +L VI+ EL+ +PE +HR GRTGRAG++G+++ + N +R Sbjct: 303 ARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQR 353 >gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15] gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980] gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15] gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980] Length = 503 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 10/354 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K E P+++ +++ G+ T +Q + L KDV+ AQTG+GKT AFGL + Sbjct: 3 FKELELSPELL-KSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML- 60 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 ++ P L L IAPTRELA+Q EL L V V GG + R+ R Sbjct: 61 ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ HIVVGTPGR+ DHI L + ++ +VLDEADEML++GF +DIE I+ P++ Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPEQ 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + K V I ++ ID V ++ + + + Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVF T+ V + L ++ + G+LSQQ+R + L+ ++G + + Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] Length = 533 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 137/333 (41%), Positives = 190/333 (57%), Gaps = 12/333 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS---AP 75 GY N T VQ+ + L D+LVS+ TGSGKT AF L LLAE PA P Sbjct: 20 GYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSIQRLLAE-----PAVKSIGP 74 Query: 76 LALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA+QV + Y K A +GG + + L +VV TPG Sbjct: 75 RVLVLTPTRELALQV-EKAAMTYGKEMRRFRTACLVGGAPYGLQLKRLSQPVDVVVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ ++ S L+ +VLDEAD MLD+GF DDI+ I P +R+ L+FSAT+ + Sbjct: 134 RLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAERQTLLFSATLDGVV 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCS 252 LA+ +DA R+ I + + + I+ R + D N +++ +LR AIVF S Sbjct: 194 GNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALLRDVEMVQAIVFAS 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ S + +LAE F AL G++ Q +R+ ALQ +R+GR RV +ATDVAARGID+ Sbjct: 254 TKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLVATDVAARGIDVAS 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ +L E+ +HR GRTGRAGR G++V Sbjct: 314 ISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAV 346 >gi|170736688|ref|YP_001777948.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818876|gb|ACA93458.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia MC0-3] Length = 465 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 198/358 (55%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV++T +Q A L L +D++ A+TGSGKT AF LAL + L A + Sbjct: 22 LAQLGYVDMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDARSFDVQ---- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ + +A E S I R V +R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEIKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA + G ++ ++ + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIEQAQKREVEWHP 372 >gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57] Length = 492 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R +++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSKIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234] gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234] Length = 501 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 203/366 (55%), Gaps = 6/366 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+++ GY T +Q + P L+ +D+L AQTG+GKT +F L + + L Sbjct: 9 LSQKVLSAVTDAGYATPTPIQAGAIPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGR 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P L + PTRELA QV + + +A+ IGGVS + R L+ GA Sbjct: 69 AR---ARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FS Sbjct: 126 VLICTPGRLLDHFERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA 244 AT+ P I LA + ++ RV +A + + R V D + V +++R G Sbjct: 186 ATMPPEIQKLADRFLQNPERVEVARPASTANTVTQRFVAAHGKDYEKRAVLRDLIRAQGE 245 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + V+ + L H F V AL G++ Q+ R L +DG ++ +A+DV Sbjct: 246 LKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIQLLVASDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G S ++ + + ++ + + Sbjct: 306 AARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDTKFSDAIEKLI 365 Query: 364 NVSVVW 369 +V W Sbjct: 366 GQTVEW 371 >gi|326318919|ref|YP_004236591.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375755|gb|ADX48024.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 478 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 132/339 (38%), Positives = 196/339 (57%), Gaps = 9/339 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ L + GY +T +Q A L P L +D++ A TGSGKT AFGLAL L Sbjct: 27 PEVLAN-LRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLERL--NPR 83 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF A AL + PTRELA QV E+ L A+ + V GGV + + L++GAH Sbjct: 84 RF----AVQALVLCPTRELADQVASEIRRLARAQENIKVVTLCGGVPLRGQVASLEHGAH 139 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L++ L VLDEAD MLD+GF +DI + P R+ L+FS Sbjct: 140 VVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTLLFS 199 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I +A+ + KD R+ + +++ + I+ R V +R +A+ +L + ++ Sbjct: 200 ATYPDGIERIARQFMKDPQRIAVQAQHAE-GKIEQRWYEVQERERLHAVSQLLNHFRPES 258 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI FC+T+ +VL F +AL G+L Q++R L + V +ATDVAAR Sbjct: 259 AIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVATDVAAR 318 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 GID+ L+ VI+ +++ +PE +HR GRTGRA +G+++ Sbjct: 319 GIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLAL 357 >gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222] gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222] Length = 665 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 157/522 (30%), Positives = 263/522 (50%), Gaps = 39/522 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L +D L AQTG+GKT AF L L + + + Sbjct: 20 ALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L GAHIVVGTP Sbjct: 75 -PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L++ VLDEADEML +GF DD+ +IL+ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + T+ Y ++ +V++A N + +V ++D A+ +L +IVF Sbjct: 194 VKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQL 373 Query: 370 EPAPSVEAIR----------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 V A R E++++ + + ++Q + ++V D +AA Sbjct: 374 PQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQ----ESLEV-----DAATLAAM 424 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV------GGGSRDNFKGSSW--FSL 471 L+ + G + +++ +R ++ + + GG R NF W + L Sbjct: 425 LLK-RQQGKSPLFYVGEDPMIAAIERDKNRRKERREDRDNGRDGGGR-NFNTQDWDTYQL 482 Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 VG +Q + + ++ L G+ + SIGAI++ T+V++ Sbjct: 483 QVGREQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQL 524 >gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str. Alaska E43] gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str. Alaska E43] Length = 432 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 189/340 (55%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +AL+E GY N T +QE + L KD L AQTG+GKT AF + + + Sbjct: 7 NIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQNIAKN 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ + AL +APTRELA+Q+ T + V GGVS + R L G Sbjct: 67 QNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILGEGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D I K +++S++K VLDEAD M D+G D++ I+ PK R+ L+F Sbjct: 127 DILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + +L + KD V+V +A + I V D+ + +V++L+ K Sbjct: 187 SATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESIK 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + K LA+ + A+ G SQ R AL ++G+ RV +ATD+AA Sbjct: 247 SLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIRVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ L VI+ +L PE +HR GRTGRAG G+++ Sbjct: 307 RGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAI 346 >gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 432 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 189/340 (55%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +AL+E GY N T +QE + L KD L AQTG+GKT AF + + + Sbjct: 7 NIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQNIAKN 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ + AL +APTRELA+Q+ T + V GGVS + R L G Sbjct: 67 QNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILGEGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D I K +++S++K VLDEAD M D+G D++ I+ PK R+ L+F Sbjct: 127 DILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + +L + KD V+V +A + I V D+ + +V++L+ K Sbjct: 187 SATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESIK 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + K LA+ + A+ G SQ R AL ++G+ RV +ATD+AA Sbjct: 247 SLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIRVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ L VI+ +L PE +HR GRTGRAG G+++ Sbjct: 307 RGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAI 346 >gi|294675271|ref|YP_003575887.1| DEAD/DEAH box helicase [Prevotella ruminicola 23] gi|294472504|gb|ADE81893.1| ATP-dependent RNA helicase, DEAD box family [Prevotella ruminicola 23] Length = 600 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 168/538 (31%), Positives = 263/538 (48%), Gaps = 51/538 (9%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I +A+ E G+V+ VQEA++ P L E DV+ AQTG+GKT AFG+ Sbjct: 1 MKTFEELGVCEQIRKAIEELGFVHPMPVQEAVI-PYLLGNENDVIALAQTGTGKTAAFGI 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + R++ A L ++PTREL +Q+ +L ++ GV V GG ++ Sbjct: 60 PLLERI-DTTQRYTQA-----LVLSPTRELCLQIADDLRDFAKYMDGVHVEAVYGGAAIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ G I+V TPGRL D + + + +VLDEADEML++GF D I I +S Sbjct: 114 PQMRALKKGVEIIVATPGRLVDLMHRGIARLEQVTNIVLDEADEMLNMGFSDSINEIFES 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 LMFSAT+S + +AK Y D + + S N +++ +V D+ A+ Sbjct: 174 LSADHHTLMFSATMSKEVERVAKKYLHDYKEIVVGSRNEGAESVNHIYYMVNAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ ++ AI+FC T+ L + + +L G+L+QQ+R +Q R+ Sbjct: 234 KRIVDFYPRIFAIIFCRTKVETQEVADKLIKDGYNAESLHGDLNQQQRDQTMQKFRNHLT 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+KG S+ ++ + + Sbjct: 294 QLLVATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIVHSREKFK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQD------------PL------FLDSIQ 397 + + V PS E I ++ +++ P + + I Sbjct: 354 IRNIEKIIGKEFVKAEIPSAEEICKKQLYKVMDQIVKTDVDDEEIAPFMQDINRYFEYID 413 Query: 398 GDE--KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455 DE KK+V + K FL A EI PV + +DR R S K+ Sbjct: 414 KDELIKKIVSLEFGK---------FL----AYYADAPEIEPV-VPEKKDR-RQQSDKQKL 458 Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + KG +++G + LM L R G RQ +G I + +++ EV Sbjct: 459 QNKPQ---KGYRRLFINLGKRNGFYPGELMQTLNRFVG-GRQEVGHIDLLDSISYFEV 512 >gi|296108765|ref|YP_003615714.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus ME] gi|295433579|gb|ADG12750.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus ME] Length = 357 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 133/350 (38%), Positives = 199/350 (56%), Gaps = 22/350 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLV--SAQTGSGKTVAFGLALASTLLAENDRFS 70 +AL +G+ T +QE I+ P L +DV + AQTG+GKT AFGL + ++ + Sbjct: 14 KALKRKGFKKPTKIQEKII-PILLSEDVNIVGQAQTGTGKTAAFGLPII-------EKIN 65 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA QV EL+ L K + + GG + + L+ GA+IVVG Sbjct: 66 DEKEIKALILTPTRELAKQVAEELKSLKGKKNLKIVEIYGGKPIKEQIYKLR-GANIVVG 124 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI+ K +N+ +L VLDEADEML++GF +D+E IL + + +L+FSAT+ Sbjct: 125 TPGRLLDHIKRKTINLKNLSYFVLDEADEMLNMGFIEDVEEILKHTNDDKNILLFSATLP 184 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNA 247 I LAK Y +D + + S + I+ + V+ S++ N + I+ ++G Sbjct: 185 REILNLAKKYMRDYKLIKVKSSK---NLIEQKHFKVSNSEKFNLLCKIINEENFYG---- 237 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++FC TR V + L E + A G+LSQ R L+ + + + ++TDVAARG Sbjct: 238 LIFCKTREDVKNLARKLIEKGYSAEAFHGKLSQFRREKILKRFKMKKINILVSTDVAARG 297 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356 ID+ L VI+ L NPE +HR GRTGRAG++G ++ FV P ++ A Sbjct: 298 IDIEGLTHVINYSLPQNPEYYVHRIGRTGRAGKRGKAITFVEPHEYKKYA 347 >gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426] gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426] Length = 651 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 30 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 84 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 85 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 143 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 144 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 203 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + +D V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 204 VKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 263 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 264 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 323 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 324 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 377 >gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395] gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587] gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3] gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39] gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226] gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385] gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587] gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3] gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395] gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39] gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226] gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395] gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385] Length = 663 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 40 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 94 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 95 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 154 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 213 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + +D V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 214 VKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 334 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387 >gi|317493632|ref|ZP_07952053.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918575|gb|EFV39913.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 636 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 189/604 (31%), Positives = 294/604 (48%), Gaps = 62/604 (10%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL++ GY + +Q + L +DVL AQTGSGKT AF L L + Sbjct: 17 IIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNI-------D 69 Query: 71 PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AP L +APTRELAVQV + ++ GV V GG + R L+ G IV Sbjct: 70 PSLKAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQRYDVQLRALRQGPQIV 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT Sbjct: 130 VGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQHQTALFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI + + + K+ V I S DI V ++ A+V L AI Sbjct: 190 MPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVFGMRKNEALVRFLEAEDFDAAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 250 IFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSV 367 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR R + R +++ Sbjct: 310 DVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERIMKLTI 368 Query: 368 VWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIA 417 P+ E + +R A ++ Q L+S D K D LL K P E +A Sbjct: 369 PEVEIPNAELLGQRRLAKFAAKVQQQ---LES--SDLDKYRD-LLTKLQPEDELDMETLA 422 Query: 418 AGFLRI---HRAGLCAPEEITPVSLVS-----------GRDRF--RDD--SRAFKVGGGS 459 A L++ R + P+ + G DRF R D R + G Sbjct: 423 AALLKMAQGERPLILPPDPVMERRPRREFRDRDDRNERGGDRFARRGDREPREAREGAPR 482 Query: 460 RDNFKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---- 513 R+ + + VG E R ++ + I+ + IG I++ + +E+ Sbjct: 483 RERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 542 Query: 514 SADGVDLLRRTVKLDKGIQLKYLGG--------EKP-DFRGYKSSG--FKSKNSQDGATK 562 D + RT L+K + ++ +G E+P RG +S+G +S +DGA + Sbjct: 543 PGDLLSHFTRTRILNKPLNMQLMGDAPAREPRRERPAGDRGGRSAGGERRSFGGRDGAPR 602 Query: 563 RFKR 566 R R Sbjct: 603 RDDR 606 >gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12J] gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA] gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J] gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA] Length = 627 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 207/387 (53%), Gaps = 35/387 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67 I AL E Y T VQ + L +D+LV++QTGSGKT AF L + + + Sbjct: 44 IVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQR 103 Query: 68 -------------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106 R PA A P L + PTRELA+QV GR L +V A Sbjct: 104 PRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 157 Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166 +GG+ ++ L I++ TPGRL DHI +++S L +V DEAD MLD+GF Sbjct: 158 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFS 217 Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226 DDIE I+ ++P R+MLMFSAT+ I LA+ ++ R+ IA+ S+I+ R Sbjct: 218 DDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFT 277 Query: 227 A-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285 +S + + ++LR K AIVF +T+ + L EH F AL G++ Q R+ Sbjct: 278 DDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNR 337 Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L +R G+ RV +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ Sbjct: 338 TLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 397 Query: 346 FVIPQN---MQRRAERLF-REANVSVV 368 ++ N RR ER R + SVV Sbjct: 398 NLVNHNDTFQWRRIERFVDRRIDASVV 424 >gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21] gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80] gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)] gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)] gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80] gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21] Length = 653 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 30 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 84 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 85 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 143 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 144 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 203 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + +D V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 204 VKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 263 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 264 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 323 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 324 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 377 >gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides BS1] Length = 591 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 162/520 (31%), Positives = 256/520 (49%), Gaps = 28/520 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + GY T VQ + L+ DVL AQTG+GKT AF L L ST+ N Sbjct: 25 DALEKVGYETPTPVQLQTIPIILKGSDVLGQAQTGTGKTAAFALPLLSTIDLSN------ 78 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 ++P L + PTRELA+QV + + V GG + R L+ G H+VVGT Sbjct: 79 ASPQVLVLTPTRELALQVAEAFQRYAACMEDFHVLPIYGGQDYSGQLRRLRRGVHVVVGT 138 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHIR + LN+ LK +VLDEADEML +GF DD+E+IL+ +P R++ +FSAT+ Sbjct: 139 PGRVMDHIRRQTLNLDGLKTLVLDEADEMLRMGFVDDVEWILEKTPATRQVALFSATMPS 198 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + Y +D V I S++ R + V+ + +A+ IL I+F Sbjct: 199 EIRRITRKYLRDFTEVAIKSKSSTVESTTQRFLPVSGHHKLDALTRILEIEHYDGVIIFV 258 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ ++ L + AL+G++ Q R + + + IATDVAARG+D+ Sbjct: 259 RTKTQTVELSEKLRARGYASAALNGDMMQNHREKTVGQFKKSVYNILIATDVAARGLDVE 318 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVV 368 + VI+ ++ ++ E+ +HR GRTGRAGR G ++ FV P+ M R ER R+ + Sbjct: 319 RISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVTPREMSMLRTIERAIRK---RID 375 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIH 424 PS E I ++ R Q D++ + +++V+ +HD + A Sbjct: 376 RMELPSTEIINDKRVARYKQQ--ISDTLSTADLHFFRELVESYCFEHDVTALDAAAALAS 433 Query: 425 RAGLCAPEEITPVSLVSGRDRF-------RDDSRAFKVGGGSRDNFK--GSSWFSLSVGS 475 +P +T GR++ D R+FK G ++ G + + VG Sbjct: 434 LYQGDSPLLLTKQMKPFGREQKERKGRQDHADGRSFKSKGKKDPLYEALGFERYRIEVGE 493 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 K + + + G++ ++G I + D + VE+ A Sbjct: 494 KHGVKPGNIAGAIINEIGLDGDAVGRITIFDDHSTVELPA 533 >gi|225025644|ref|ZP_03714836.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC 23834] gi|224941594|gb|EEG22803.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC 23834] Length = 466 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 198/349 (56%), Gaps = 2/349 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69 I AL+++GY T++Q A + L D+L +AQTG+GKT AF L +L Sbjct: 14 ITAALADQGYEQPTAIQTAAIPKVLAGHDLLAAAQTGTGKTAAFMLPSLERLRRYATTST 73 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ L + PTRELA Q+ + + V GG+++ ++ DL+ G IV Sbjct: 74 SPAMHPVRMLVLTPTRELADQIDQNTAAYIKNLPLRHTVLFGGMNMDKQTADLRAGCEIV 133 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V T GRL DH++ K + + ++ VVLDEAD MLD+GF DDI I+ PK+R+ L+FSAT Sbjct: 134 VATVGRLLDHVQQKNIRLDKVEIVVLDEADRMLDMGFIDDIRRIMQLLPKQRQTLLFSAT 193 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 SP I LA+++ +V A +N + ++ + + + + N + ++ I Sbjct: 194 FSPPIRKLAQDFMNRPEQVQTAPQNTASASVEQHIIAIDTAQKRNLLERLIVDLHINQVI 253 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ SV + + L V + G+ SQQ R L + G RV +ATDVAARG+ Sbjct: 254 VFCKTKQSVDQVARDLKRRGLSVAPIHGDKSQQTRLETLNAFKAGELRVLVATDVAARGL 313 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 D+ +L VI+ E+ + E+ +HR GRTGRAG +G+++ ++ ++ Q+ E Sbjct: 314 DIAELPFVINYEMPTQAEDYVHRIGRTGRAGAEGVAISLMDEDEQKMFE 362 >gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12D] gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D] Length = 627 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 207/387 (53%), Gaps = 35/387 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67 I AL E Y T VQ + L +D+LV++QTGSGKT AF L + + + Sbjct: 44 IVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQR 103 Query: 68 -------------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106 R PA A P L + PTRELA+QV GR L +V A Sbjct: 104 PRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 157 Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166 +GG+ ++ L I++ TPGRL DHI +++S L +V DEAD MLD+GF Sbjct: 158 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFS 217 Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226 DDIE I+ ++P R+MLMFSAT+ I LA+ ++ R+ IA+ S+I+ R Sbjct: 218 DDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFT 277 Query: 227 A-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285 +S + + ++LR K AIVF +T+ + L EH F AL G++ Q R+ Sbjct: 278 DDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNR 337 Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L +R G+ RV +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ Sbjct: 338 TLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 397 Query: 346 FVIPQN---MQRRAERLF-REANVSVV 368 ++ N RR ER R + SVV Sbjct: 398 NLVNHNDTFQWRRIERFVDRRIDASVV 424 >gi|262340963|ref|YP_003283818.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272300|gb|ACY40208.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 551 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 206/347 (59%), Gaps = 21/347 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 I +AL G+ T++QE ++ P L E+DV+ AQTG+GKT AFGL + + + Sbjct: 15 ILKALEAIGFQYPTTIQEKVI-PFLLSSERDVIALAQTGTGKTAAFGLPIIQKVNFD--- 70 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAH 126 S P A + PTREL VQ+ R+ + ++K + + + GGVS+ + + LQN H Sbjct: 71 ---LSIPQAFILCPTRELCVQITRDF-YRFSKFLSTIKIISLYGGVSIDSQIKSLQNKTH 126 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++GTPGR+ D I+ K L++ +K ++LDEADEML++GF++++++I+ PK R+ L+FS Sbjct: 127 IIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNRQSLLFS 186 Query: 187 ATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 AT+S + +A+ Y D V + NI S+ +H I Y ++ L+ + +A+ I+ Sbjct: 187 ATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKH--IYY--MVGHLNKKYSALKRIVDI 242 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + I+FC T+ + L + + AL G+LSQ +R + + R+ + +AT Sbjct: 243 NPGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFLVAT 302 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARG+D+ ++ VI+ L + +HRSGRTGRAG G+SV +I Sbjct: 303 DVAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCII 349 >gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68] gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6] gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF] gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039] gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071] gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636] gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679] gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68] gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6] gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF] gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071] gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636] gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679] gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039] Length = 503 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 195/354 (55%), Gaps = 10/354 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K E P+++ +++ G+ T +Q + L KDV+ AQTG+GKT AFGL + Sbjct: 3 FKELELSPELL-KSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML- 60 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 ++ P L L IAPTRELA+Q EL L V V GG + R+ R Sbjct: 61 ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ HIVVGTPGR+ DHI L + ++ +VLDEADEML++GF +DIE I+ P + Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + K+ V I ++ ID V ++ + + + Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVF T+ V + L ++ + G+LSQQ+R + L+ + G + + Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus suis GZ1] Length = 502 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 126/340 (37%), Positives = 198/340 (58%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + G+ + +QE + L KDV+ AQTG+GKT AFGL + + N Sbjct: 3 AVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTNN------Q 56 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A +L IAPTRELAVQ EL + GV V GG S+ ++ + L++GAHIVVGTPG Sbjct: 57 AIQSLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPG 116 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D I+ K L + ++ ++LDEADEML++GF DDIE I++ P+ R+ L+FSAT+ I Sbjct: 117 RLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPI 176 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + K+ V IA++ + ++D + V ++ + + ++ + +IVF T Sbjct: 177 KRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPELSIVFGRT 236 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T+ L F+ + G+L Q +R ++ ++ + V +ATDVAARG+D+ + Sbjct: 237 KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDISGV 296 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 297 THVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 336 >gi|282859050|ref|ZP_06268186.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia JCVIHMP010] gi|282588218|gb|EFB93387.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia JCVIHMP010] Length = 625 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 166/538 (30%), Positives = 272/538 (50%), Gaps = 37/538 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I +A+ E+G+ + VQE ++ P L DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVCEEIRKAIEEQGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + + A+ ++PTREL +Q+ +L ++ + +A GG S+ Sbjct: 60 PLLQRI------DTTTKETQAIVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGTSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + ++L+ G I+V TPGRL D + RGK + +++ +VLDEADEML++GF++ I IL Sbjct: 114 TQIKELKRGVQIIVATPGRLIDLMHRGKA-KLENVRNMVLDEADEMLNMGFQESITEILS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P+ R L+FSAT+S + +AK Y D + + S N ++++ +V D+ A Sbjct: 173 GVPEDRNTLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNAKDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + ++ ++ AI+FC T+ L + + AL G+LSQQ+R +Q R Sbjct: 233 LKRLVDFYPKIYAIIFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHL 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ +L VI+ L + EN HRSGRTGRAG+KG S+ +I + Sbjct: 293 TQILVATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKY 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------- 407 + + R + + PS E I ++ + + D L D DE+++ + Sbjct: 353 KVRNIERVISKEFIDGTLPSAEEICKKQLFKSMDDILKTDV---DEEQIAPYVKDIKRQF 409 Query: 408 --LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDR--FRDDSRAFKVGG---- 457 + K D K + F R APE P + DR R+DSR + G Sbjct: 410 EYIDKEDLIKKIVTVTFGRFLDYYKNAPEIEKPTTQNGRADRRGGRNDSRGGRGGERSDR 469 Query: 458 --GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 GSR G +++G +M + ++ RQ++G I + +++EV Sbjct: 470 SRGSRKAEAGFKRLFINLGKDDGFYPGEVMQFINKNVH-GRQAVGHIDLLKKQSYIEV 526 >gi|257470192|ref|ZP_05634283.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185] gi|317064408|ref|ZP_07928893.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185] gi|313690084|gb|EFS26919.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185] Length = 527 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 152/509 (29%), Positives = 253/509 (49%), Gaps = 38/509 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +ALS++GY T +Q A+ P L EKD++ AQTG+GKT AF L + +RF Sbjct: 18 KALSKKGYEKPTPIQ-ALTIPALLDGEKDIIGQAQTGTGKTAAFSLPIL-------ERFE 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A+ +APTRELA+QV E+ L + + GG S+ + R L+ G I+VG Sbjct: 70 PGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLKKGTDIIVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D + K + + +LK +LDEADEML++GF +D+E IL+S+ ++RML FSAT+ Sbjct: 130 TPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDEKRMLFFSATMP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +AK + +D + + + D V D+ A+ I+ IVF Sbjct: 190 NEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVHERDKFEALCRIIDLTKDFYGIVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V+ L + + L G++SQ R L+ + + V +ATDVAARGID+ Sbjct: 250 CRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAARGIDV 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369 DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 310 NDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKIVKTEIRK 368 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPEKIAAGFLRIH 424 E P V+ + + R++++ L+ I + K++ LL D I A ++ Sbjct: 369 ERVPGVKDVIQVKKFRLIEE---LNHILAENNFDNFKELSRELLNGEDAVDIVAALIK-- 423 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 + D+S ++ + G +++G K + L Sbjct: 424 ----------------HSYEDVLDESNYNEINNSAPLEKTGKVRLFVALGRKNDMTPKKL 467 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + M+ + ++ + + + V + +F+ V Sbjct: 468 VEMVTSKTKVDERKLKNVEVYENFSFLSV 496 >gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33] gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33] gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84] gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7] gi|253756028|ref|YP_003029168.1| DEAD box helicase family protein [Streptococcus suis BM407] gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33] gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33] gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84] gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407] gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7] gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14] Length = 514 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 126/340 (37%), Positives = 198/340 (58%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + G+ + +QE + L KDV+ AQTG+GKT AFGL + + N Sbjct: 15 AVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTNN------Q 68 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A +L IAPTRELAVQ EL + GV V GG S+ ++ + L++GAHIVVGTPG Sbjct: 69 AIQSLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D I+ K L + ++ ++LDEADEML++GF DDIE I++ P+ R+ L+FSAT+ I Sbjct: 129 RLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + K+ V IA++ + ++D + V ++ + + ++ + +IVF T Sbjct: 189 KRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPELSIVFGRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T+ L F+ + G+L Q +R ++ ++ + V +ATDVAARG+D+ + Sbjct: 249 KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348 >gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4] gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4] Length = 619 Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 203/357 (56%), Gaps = 10/357 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL G+V+ T +Q A + L D L AQTG+GKT AF L L + L + + Sbjct: 17 ILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKLDLDQRK-- 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAH++V Sbjct: 75 ----PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKNGAHVIV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D I + L++ +K VLDEADEML++GF DD+ I++ SP + ++FSAT+ Sbjct: 131 GTPGRVQDLINRERLHLDEVKTFVLDEADEMLNMGFVDDVTAIMEHSPDSAQRVLFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P + ++ + + + V V++A +N + + +V ++D A+ +L +IV Sbjct: 191 PPMLKSICERFLRSPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIV 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D Sbjct: 251 FVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKKGVIDILVATDVVARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 +P + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 311 VPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367 >gi|188995896|ref|YP_001930148.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277] gi|188595576|dbj|BAG34551.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277] Length = 604 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 138/374 (36%), Positives = 208/374 (55%), Gaps = 23/374 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE I + +A++E G+ VQE ++ L E D++ AQTG+GKT AFGL Sbjct: 1 MKTFEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115 L + R P AL + PTREL +Q+ +L Y+K + V + GG + Sbjct: 61 LLQKIDLSGGR------PQALVLCPTRELCLQIADDLNS-YSKYLSDVHILPVYGGTPID 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ G IVV TPGRL D +R + +++S + VVLDEADEML++GF +D+E IL Sbjct: 114 AQIRALRRGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILAD 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P +R +L+FSAT+ I+ +A +Y KD + I ++N +++I + +V+ + A+ Sbjct: 174 IPSERHLLLFSATMPKEISKIAASYMKDPKEIVIGNKNEGNANIKHLYYMVSARHKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I Y+ IVFC TR L + + +L G+LSQ +R +Q R Sbjct: 234 KRIADYYPNIYGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNL 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-------- 347 ++ +ATDVAARG+D+ DL VIH L + E+ HRSGRT RAG+ G+S+ + Sbjct: 294 QLLVATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGK 353 Query: 348 ---IPQNMQRRAER 358 I + MQ++ ER Sbjct: 354 IKNIERTMQKQIER 367 >gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M] gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M] Length = 571 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 180/571 (31%), Positives = 290/571 (50%), Gaps = 44/571 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY + T +Q A + + DV+ AQTG+GKT AF + + S + D S A+ Sbjct: 27 AIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSKI----DTTSTAT 82 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELA+QV A + + V GG S + L+ GA +VVGTP Sbjct: 83 Q--ALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGSSYAIQLAGLRRGAQVVVGTP 140 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ + L++S + +VLDEADEML +GF +D+E IL +P+ +++ +FSAT+ PA Sbjct: 141 GRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERILSETPEYKQVALFSATMPPA 200 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + Y D + V ++ +I R + VA + +A+ +L + IVF Sbjct: 201 IRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVR 260 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L F A++G++ Q +R + +RDG + +ATDVAARG+D+ Sbjct: 261 TKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRDGGIDILVATDVAARGLDVER 320 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ +R +L +A + E Sbjct: 321 ISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPR--ERHLLKLIEKATRQTLTEA 378 Query: 372 A-PSVEAIRERDAQRILQDPLFLDSI------QGDE--KKMVDVLLAKHDPE--KIAAGF 420 P+VE + +AQR+ + F DSI G E +++V+ +H+ IAA Sbjct: 379 ELPTVEDV---NAQRVAK---FADSITHALSNTGIELFRRLVEDYEREHNVPMADIAAAL 432 Query: 421 LRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 R G L AP+ R R K R + S + +SVG + Sbjct: 433 ALQSRDGEEFLLAPDP-------PPDQRERHPRNERKERPERRRSGGAFSTYRISVGKRH 485 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-KLDKGIQLKYL 536 K ++ + G++R G I + PD + VE+ V L R T+ KL++ L Sbjct: 486 KVGPGAIVGAIANEGGLHRSDFGHITIGPDFSLVELP---VKLPRETLKKLEQTRISGVL 542 Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKRF 567 +PD K+ +K++ + DG R KR Sbjct: 543 INLRPDRPADKA--YKARRN-DGGKPRRKRL 570 >gi|300727507|ref|ZP_07060898.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella bryantii B14] gi|299775210|gb|EFI71811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella bryantii B14] Length = 622 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 167/537 (31%), Positives = 267/537 (49%), Gaps = 41/537 (7%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I A+SE G+ + VQE ++ P L RE DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEELGVSKDICRAISELGFEHPMPVQEEVI-PYLLSRESDVIALAQTGTGKTAAYGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 + L D + + + L+ PTREL +Q+ +L E+ G+ + GG + Sbjct: 60 PV----LQNTDPSTKITQTVILS--PTRELCLQIADDLNEFAKYIDGMHIVAVYGGTDIG 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L++G I+V TPGRL D + + +++ +VLDEADEML++GF + I I + Sbjct: 114 SQIRTLKHGVQIIVATPGRLVDLMNRGVAKLENVQNIVLDEADEMLNMGFSESINTIFEG 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 K L+FSAT+S + +AKNY + + + S N +++ +V+ D+ A+ Sbjct: 174 LSKDHITLLFSATMSKEVERIAKNYLHNHKEIVVGSRNEGAEHVNHIYYMVSAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ +H I+FC T+ L + + AL G+LSQQ+R +Q R+ Sbjct: 234 KRIVDFHPRIFGIIFCRTKVETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHLT 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + +ATDVAARG+D+ +L VI+ L + E+ HRSGRTGRAGRKG S+ +I + + Sbjct: 294 QFLVATDVAARGLDVDELTHVINYGLPDDIESYTHRSGRTGRAGRKGTSISIIHVKEKWK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDV----- 406 ++ ++ + P E I ++ +++ D + D DE M D+ Sbjct: 354 VRQIEKQIGKEFIAGELPKAEEICKKQLYKVMNDIMKTDV---DEDMIAPYMEDINRQFE 410 Query: 407 LLAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVS-------GR-DRFRDDSRAFKVG 456 + K D K +A F + APE I P S G+ DR D SR Sbjct: 411 YIDKEDIIKKMVAVTFGKFLDYYKNAPEIIQPTGKSSEIRSERGGKGDRRNDRSR----- 465 Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 G R G +++G +M L ++ NRQ++G I + +++EV Sbjct: 466 -GPRKAEPGYRRLFINLGKADGFYPGEVMQFLNKNMK-NRQAVGHIDLLSKFSYIEV 520 >gi|110834947|ref|YP_693806.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2] gi|110648058|emb|CAL17534.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2] Length = 459 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 196/363 (53%), Gaps = 8/363 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GYV +T VQ L L+ DV+ A TGSGKT AFGL L L N R+ A Sbjct: 19 LDALGYVTMTPVQAQSLPLLLKGHDVIAQASTGSGKTAAFGLGLLHPL---NPRYYGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV E+ L G + V GG + + L++GA IVVGTPG Sbjct: 76 ---LVLCPTRELADQVAVEIRRLARGPGNIKVLTLCGGQPIGPQIGSLEHGAQIVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+ L++ L +VLDEAD MLD+GF D I ++ +P +R+ L+FSAT P I Sbjct: 133 RVLKHLSKGTLSLDGLNTLVLDEADRMLDMGFYDSIAEVIRQTPPRRQTLLFSATYPPGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + V + + + +S I+ R V R+ A+ + + + +VFC T Sbjct: 193 KQLAETFMSNPQHVEVETLH-DNSQIEQRYYEVEPFQREEAVASAIACFRPVSCVVFCVT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L + L+ +L Q+ER L + + V +ATDVAARG+D+ +L Sbjct: 252 KQQCQDVVNQLCRQGLSAMVLNSDLEQRERDEVLTLFANRSLSVLVATDVAARGLDIDNL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 ++VI+AELS P+ +HR GRTGRAG KG+++ ++ RRA + + + W P Sbjct: 312 DMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAIAIEQLQGAPLNWHPLN 371 Query: 374 SVE 376 S++ Sbjct: 372 SLK 374 >gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2] gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27] gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93] gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2] gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27] gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93] Length = 643 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 20 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + +D V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 194 VKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 314 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367 >gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70] gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70] Length = 466 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 145/440 (32%), Positives = 233/440 (52%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +Q + L+ KDV+ AQTG+GKT AFG+ L + +N+ Sbjct: 15 KAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLIEKVDVKNEAIQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA+QV EL + A V V GG + R+ R L+ HI+VGTP Sbjct: 73 ----GLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKRPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + ++ VVLDEADEML++GF DDIE IL + P+KR+ L+FSAT+ Sbjct: 129 GRIIDHINRKTLRLDNVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLLFSATMPEP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + V + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMNEPHIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRLLDIQAPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L + + G+LSQ +R + L+ ++G + +ATDVAARG+D+ Sbjct: 249 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+ G+++ FV P N++R +R Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIERTTKRKMER--- 365 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 +P EA+ QRI + L + +++ + K+ + LL +HD + A + Sbjct: 366 ---MKPPTLDEAL--EGQQRIAVEKL-VATVESENLSFYKRAAEELLEEHDSVSLVAACI 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ L + TPV L Sbjct: 420 KM----LTKEPDTTPVQLTE 435 >gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Bacillus pumilus ATCC 7061] gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Bacillus pumilus ATCC 7061] Length = 496 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 134/397 (33%), Positives = 220/397 (55%), Gaps = 27/397 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ G+ T +Q + L+ KDV+ AQTG+GKT AFG+ L ++ PA Sbjct: 16 KAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLV-------EKIDPA 68 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S + A+ IAPTRELA+QV EL + V GG + R+ R L+ HI+VGT Sbjct: 69 SPNIQAIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKKNPHIIVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI + + + +++ VVLDEADEML++GF +DIE IL + P + + L+FSAT+ Sbjct: 129 PGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTLLFSATMPA 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + V + ++ S+I + + + + + +L + +IVF Sbjct: 189 PIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLLDIQSPELSIVFG 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+L+Q +R AL+ ++G V +ATDVAARG+D+ Sbjct: 249 RTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAARGLDIS 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V + ++ +PE+ +HR GRTGRAGR GM+V F+ P R + + R Sbjct: 309 GVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAVTFITP-----REKDMLR--------- 354 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 ++E +R R +++P ++I+G ++ +D L Sbjct: 355 ---AIEQTTKRKMDR-MKEPTLDEAIEGQQQVTIDRL 387 >gi|170694034|ref|ZP_02885190.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] gi|170141106|gb|EDT09278.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] Length = 467 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 135/364 (37%), Positives = 200/364 (54%), Gaps = 8/364 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P L++ GYV +T +Q A L L D++ A+TGSGKT AF LAL + L N Sbjct: 16 LPAATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDTRN 75 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 A A+ + PTRELA QV +E+ L A+ + V GG + + L++GA Sbjct: 76 ------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L + L +VLDEAD MLD+GF DDI ++ PK+R+ L+F Sbjct: 130 HIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTLLF 189 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I L++ + ++ V +A E ++ I R V +R +A+ +L ++ Sbjct: 190 SATYPEGIVKLSQQFLRNPKEVKLA-ERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRPV 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + + FC+T+ VL F +AL GEL Q+ER L + V +ATDVAA Sbjct: 249 STLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ LE VI+ +++ +PE +HR GRTGRA ++G ++ + N R L + Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGLEQAHKR 368 Query: 366 SVVW 369 V W Sbjct: 369 DVEW 372 >gi|256422110|ref|YP_003122763.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] gi|256037018|gb|ACU60562.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] Length = 581 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 157/534 (29%), Positives = 272/534 (50%), Gaps = 22/534 (4%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGL 56 M FE + + I + + + G++ T +QE + P L ++D + AQTG+GKT AFGL Sbjct: 1 MTTFETLGLQEPILKGIQDLGFIAPTPIQEKAI-PVLLGGDRDFVGLAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVH 115 L + + P L + PTREL +Q+ +L+ G V V + GG S+ Sbjct: 60 PLLQQIDIKQ------RHPQGLILCPTRELCLQITNDLKNFSKHLGDVSIVAVYGGSSIV 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 ++ RDL+ G HIVV TPGRL D I K +N ++++ VVLDEADEML++GF++DI IL + Sbjct: 114 QQLRDLKRGVHIVVATPGRLLDIIERKAVNFANVRYVVLDEADEMLNMGFQEDINNILSN 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 +P+++ +FSAT+ + +A+ Y D + + ++N +++I++ +V ++ A+ Sbjct: 174 TPEEKTTWLFSATMPQEVRRIAQKYMSDPFELTVGNKNSGNANIEHEYYVVRPREKYAAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ I+F T+ + L + AL G+L+QQ+R ++ R+ Sbjct: 234 KRIVDYNPEIFGIIFTRTKIESQEIAESLIRDGYNADALHGDLTQQQRDKVMKRFREKSL 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 +V +ATDVAARGID+ ++ VI+ EL + EN HRSGRT RAG+ G+S+ +I + Sbjct: 294 QVLVATDVAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGKSGISIAIITGRDTGK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL---LAKHD 412 ++ R P A+ E+ ++ + + + ++ + A Sbjct: 354 IRQIERVIGKKFTKVDVPDGFAVCEKQLFGLVHKVHNVVVNEEQIEPYLERIFEEFASMT 413 Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472 E+I F + + P V +++ R+ + G N K + F ++ Sbjct: 414 KEEIIKRFASLEFNQFLEYYQDAPDLNV------KEERRSAEGGERRSSNGKFTRLF-IN 466 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 +GS ++ LC +SG+ IG I ++ +F EV D V+ ++T K Sbjct: 467 LGSVDDFTRGDMLRYLCDTSGVRGNKIGRIDLKGVYSFFEVENDVVEKFQQTFK 520 >gi|25027815|ref|NP_737869.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens YS-314] gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314] gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens YS-314] gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314] Length = 736 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 215/375 (57%), Gaps = 7/375 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ + +A+ + G+ + +Q + + DV+ AQTG+GKT AF L + S + Sbjct: 112 LPQQVLDAVRKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTGKTAAFALPVLSRI---- 167 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 D+ +P AL +APTRELA+QV + G + + I GG + + L+ GA Sbjct: 168 DK--SVRSPQALVLAPTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGIQLSGLRRGA 225 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L+IS L+ +VLDEADEML++GF++D+E IL +P +++ +F Sbjct: 226 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVALF 285 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L+K Y + +++ SE R ++I R + VA ++ +A+ IL + Sbjct: 286 SATMPNGIRRLSKQYLNNPQEISVKSETRTATNITQRFLSVAHRNKMDALTRILEVTEFE 345 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G+++Q +R + ++DGR + +ATDVAA Sbjct: 346 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 405 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ + +R + R N Sbjct: 406 RGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 465 Query: 366 SVVWEPAPSVEAIRE 380 +V P+V+ + E Sbjct: 466 PLVEMELPTVDEVNE 480 >gi|84778881|dbj|BAE73658.1| inducible ATP-independent RNA helicase [Sodalis glossinidius str. 'morsitans'] Length = 627 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 164/544 (30%), Positives = 265/544 (48%), Gaps = 27/544 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL++ GY + +Q A + L +DVL AQTGSGKT AF L L + E Sbjct: 22 ILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNIKPE----- 76 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 +AP L +APTRELAVQVG ++ GV V GG + R L+ G +VV Sbjct: 77 -LAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRYDVQLRALRQGPQVVV 135 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E IL P + + +FSAT+ Sbjct: 136 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQTALFSATM 195 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + + V I S DI V ++ A+V L AI+ Sbjct: 196 PEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 255 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L ++DGR + IATDVAARG+D Sbjct: 256 FVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDILIATDVAARGLD 315 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 316 VDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERIMKLTIPE 375 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI 423 P+ E + R + + ++ + M LLAK P E +AA L++ Sbjct: 376 VDLPTAEVLSTRRLAKFAAK--VQNQLESSDLDMYRALLAKLQPAEELDIETLAAALLKM 433 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSR------AFKVGGGSRDNFKGSSWFSLSVGSKQ 477 + P ++P S++ R R R + R + + + VG Sbjct: 434 AQGE--RPLILSPDSVIERRPRREFCERDERREGGERPPRRERRDVGEMDLYRIEVGRDD 491 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQL 533 E R ++ + I+ + IG I++ + +E+ + + RT L+K + + Sbjct: 492 GVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPMNM 551 Query: 534 KYLG 537 +++G Sbjct: 552 QFVG 555 >gi|91210637|ref|YP_540623.1| ATP-dependent RNA helicase DbpA [Escherichia coli UTI89] gi|117623595|ref|YP_852508.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O1] gi|218558330|ref|YP_002391243.1| ATP-dependent RNA helicase DbpA [Escherichia coli S88] gi|237705373|ref|ZP_04535854.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA] gi|91072211|gb|ABE07092.1| ATP-independent RNA helicase DbpA [Escherichia coli UTI89] gi|115512719|gb|ABJ00794.1| ATP-independent RNA helicase DbpA [Escherichia coli APEC O1] gi|218365099|emb|CAR02806.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli S88] gi|226900130|gb|EEH86389.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA] gi|294490917|gb|ADE89673.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034] gi|307627083|gb|ADN71387.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146] gi|323949054|gb|EGB44946.1| DEAD/DEAH box helicase [Escherichia coli H252] gi|323956904|gb|EGB52636.1| DEAD/DEAH box helicase [Escherichia coli H263] Length = 457 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 208/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ+A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ VL E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 LPANSSIVPLEAE 381 >gi|307129391|ref|YP_003881407.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] gi|306526920|gb|ADM96850.1| ATP-dependent RNA helicase [Dickeya dadantii 3937] Length = 631 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 172/577 (29%), Positives = 271/577 (46%), Gaps = 49/577 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ALSE GY + +Q + L +DVL AQTGSGKT AF L L + + A+ Sbjct: 17 ILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNIKAD----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV E+ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + D V I S DI V ++ A++ L AI+ Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQ----GDEKKMVDVLLAKHDP-------EKIAA 418 P+ E + +R R+ Q F +Q + M LL+K P E +AA Sbjct: 371 VDLPNAELLGQR---RLAQ---FAGKVQQQLESSDLDMYRALLSKLQPQQEELDIETLAA 424 Query: 419 GFLRI---HRAGLCAPEEITPVSLVSG--------------RDRFRDDSRAF----KVGG 457 L++ R + P+ + DR + RA + Sbjct: 425 ALLKMAQGERPLILPPDPVVERRPRREFRERDERFERRGDRNDRGDRNDRAPRGDDRPAR 484 Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---- 513 R + + + VG E R ++ + I+ + IG I++ + +E+ Sbjct: 485 RERRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 544 Query: 514 SADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSG 550 D + RT L+K + ++ +G +P R + G Sbjct: 545 PGDLLSHFTRTRILNKPMNMQLMGDAQPHERRERREG 581 >gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159] gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159] Length = 534 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 125/335 (37%), Positives = 185/335 (55%), Gaps = 6/335 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + G+ VQ + L +D +V A TG+GKT AF L + L+ Sbjct: 26 ALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALPILQGLVPYG------H 79 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA+QV + L V GG + R+ R L++ ++VGTPG Sbjct: 80 GPQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLRALRHPVDVIVGTPG 139 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+R + L + ++ V+LDEADEMLD+GF +D+E+IL+ P++R+ +FSATI P I Sbjct: 140 RIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRERQTALFSATIPPRI 199 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L + Y + V + I E I VA + A+ IL Y +AI+F T Sbjct: 200 RQLTQRYLRAPVTIAIHPERVTVPSIAQTVYEVAAHAKLEALSRILDYEAPTSAIIFVRT 259 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 ++ L + A+ G+LSQ R A+Q R G+ + IATDVAARG+D+P + Sbjct: 260 KSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVDLLIATDVAARGLDIPAV 319 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VI+ ++ S+PE+ +HR GRTGRAG G ++ +I Sbjct: 320 SHVINFDIPSDPESYVHRIGRTGRAGATGTAITLI 354 >gi|304395420|ref|ZP_07377303.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] gi|304356714|gb|EFM21078.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] Length = 460 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 209/375 (55%), Gaps = 10/375 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 ++P + L E GY ++T VQ A L L+ +DV A+TGSGKT AFG+ L + Sbjct: 7 LNSLPDSQLDNLREMGYTSMTPVQAATLPAILQGRDVRAQAKTGSGKTAAFGIGLLHHI- 65 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121 ++ RF AL + PTRELA QVG L L + + V+ +C GG + +R L Sbjct: 66 -DSTRFQTQ----ALILCPTRELADQVGNVLRQLARFTRNIKVLTLC-GGQPMSAQRDSL 119 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + HIVVGTPGR+ DHI + L + L +VLDEAD ML++GF +D+E I++++P R+ Sbjct: 120 VHPPHIVVGTPGRILDHINRENLKLDQLNTLVLDEADRMLEMGFLNDMETIIEATPASRQ 179 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSAT IT ++ +Q+DA+ V + E + ID + + +++ ++ +L Sbjct: 180 TLLFSATWPDGITAISTRFQRDALSV-VTEEVSELPSIDQQFFEASHNEKLGLLIALLSD 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + +VFC+T+ L + L G+L Q++R L +G RV +AT Sbjct: 239 RQPSSCVVFCNTKRECDDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+D+ L +V++ +L+ +PE LHR GRT RAG G++V ++ + RA L Sbjct: 299 DVAARGLDIKSLAMVVNYQLAWDPEIHLHRIGRTARAGEHGVAVSLVAADEMARAHALED 358 Query: 362 EANVSVVWEPAPSVE 376 + W A +++ Sbjct: 359 FLQQKLPWVSASTLK 373 >gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426] gi|81675946|sp|Q5L3G9|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426] Length = 467 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 150/456 (32%), Positives = 240/456 (52%), Gaps = 40/456 (8%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F+ + Q + +A+ G+ T +Q + L+ KDV+ AQTG+GKT AFG+ + Sbjct: 1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + +N SA AL +APTRELA+QV EL + A V V GG + R+ Sbjct: 61 VEKVNVKN------SAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L+ H++VGTPGR+ DHI L + H+ VVLDEADEML++GF +DIE IL P Sbjct: 115 RALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPA 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I +A+ + + V + ++ +I + V + + + + Sbjct: 175 ERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRL 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + AIVF T+ V + L + + G+LSQ +R + L+ ++G + Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEIL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----- 352 +ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G+++ FV P+ + Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354 Query: 353 -----QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKM 403 +R+ ER+ +P EA+ QRI + L L+ ++ + K+ Sbjct: 355 IERTTKRKMERM----------KPPTLDEAL--EGQQRIAIEKL-LNVVETENLSFYKRA 401 Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSL 439 + LL +HD I A L++ L + TPV L Sbjct: 402 AEELLEEHDSVTIVAACLKM----LTREPDTTPVQL 433 >gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51] Length = 492 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 142/470 (30%), Positives = 243/470 (51%), Gaps = 28/470 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428 P+ I E + L D + I +++ ++ +P ++ L + + GL Sbjct: 386 PT---INENQIIKTLHDAKVSEGIISLYEQLTEIF----EPSQLVLKLLSLQFETTKIGL 438 Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 P+E TP + + + + +R+FK G RD ++ S Sbjct: 439 NQQEIDAIQNPKEKTPKT-PNKKTHPHEQARSFK-KGQHRDRHPKTNHHS 486 >gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001] gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus LMS2-1] gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG] gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705] gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001] gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus LMS2-1] gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG] gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705] gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG] Length = 502 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 126/342 (36%), Positives = 194/342 (56%), Gaps = 7/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ G+ T +Q + L KDV+ AQTG+GKT AFGL + + + DR Sbjct: 14 KAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPILQHI-DKADR---- 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL I+PTRELA+Q EL L + V GG + R+ R L + IVVGTP Sbjct: 69 -SIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L + HL +VLDEADEMLD+GF DDIE I++ P +R+ L+FSAT+ A Sbjct: 128 GRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLFSATMPAA 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L + K+ V V I ++ ++ V ++ + + + A++F Sbjct: 188 IMRLTNKFMKEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V T+ L ++ + G+L+QQ+R + L+ + G+ +ATDVAARG+D+ Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + V + ++ +P++ +HR GRTGRAG KG+SV FV P ++ Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIE 349 >gi|117617930|ref|YP_855071.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559337|gb|ABK36285.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 458 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 132/352 (37%), Positives = 205/352 (58%), Gaps = 10/352 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + L+ GY+ +T +Q L L KD++ A+TGSGKT AFGL L + L + Sbjct: 9 NLSPALQDNLASLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLANL--D 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +R AL + PTRELA QV E+ L A+T V + GG + L Sbjct: 67 VNRLEVQ----ALVLCPTRELADQVATEIRRL-ARTLPNVKLVTLCGGTPTAPQSATLSF 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHI VGTPGR+ H+ L + LK +VLDEAD MLD+GF +DI ++ +P+ R+ L Sbjct: 122 GAHIAVGTPGRILKHLEQGTLELDGLKTLVLDEADRMLDMGFGEDINRVISHAPRDRQTL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I +++ Q++ V V++ S + + S I+ + V R +A+ +L ++ Sbjct: 182 LFSATYPEGIAQMSRGVQRNPVEVSVESLH-EDSAIEQKLYEVPAGQRLDALGWLLSHYQ 240 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VFC+T+ + + LA F +AL+G+L Q+ER L +G A + +ATDV Sbjct: 241 PSSCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDV 300 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 AARG+D+ +L VI+ EL+ +PE +HR GRTGRAG++G+++ + N +R Sbjct: 301 AARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQR 352 >gi|115379574|ref|ZP_01466663.1| heliCase, c-terminal:dead/deah box helicase, n-terminal [Stigmatella aurantiaca DW4/3-1] gi|115363432|gb|EAU62578.1| heliCase, c-terminal:dead/deah box helicase, n-terminal [Stigmatella aurantiaca DW4/3-1] Length = 608 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 199/368 (54%), Gaps = 31/368 (8%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ EALS GY T +Q A L P L KD+L A TG+GKT AF L L Sbjct: 44 LPPLV-EALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLL------- 95 Query: 67 DRFSP-ASAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 R +P A AP AL + PTRELA+QV + K G+ V GG + ++ R L+ Sbjct: 96 QRITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLK 155 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGR DH++ K L + ++ VVLDEADEMLD+GF +D+E IL S+P+KR+ Sbjct: 156 RGVDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQT 215 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN---------RQHSDIDYRAVLVALSDRDN 233 +FSAT+ P I ++A+ + ++ VRV IA E RQ + I RA VA R Sbjct: 216 ALFSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLSR-- 273 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 +L AIVFC TR V T L H ++ A Sbjct: 274 ----VLDVEAPTAAIVFCRTRTEVDELTLSLNGHGWRXXAXXXXXXXXXXXGXXXXRLSH 329 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 A + +ATDVAARG+D+ L V++ ++ + PE +HR GRTGRAGR+G+++ ++ + Sbjct: 330 SADLLVATDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLV----E 385 Query: 354 RRAERLFR 361 R RL R Sbjct: 386 PREHRLLR 393 >gi|258648289|ref|ZP_05735758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella tannerae ATCC 51259] gi|260852209|gb|EEX72078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella tannerae ATCC 51259] Length = 607 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 170/552 (30%), Positives = 278/552 (50%), Gaps = 38/552 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56 MK FE + + I A++E GY N VQE ++ P L DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEELGVNEEIRRAIAELGYENPMPVQEEVI-PYLLGVGNDVIALAQTGTGKTAAYGL 59 Query: 57 ALASTLLAENDRFSPAS-APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSV 114 + + P A+ ++PTREL +Q+ +L ++ G+ V GG S+ Sbjct: 60 PVLQ-------KVDPTQRTTQAVILSPTRELCLQIADDLKDYSRYIDGLHVQAVYGGTSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ GA ++V TPGRL D + + +++ VVLDEADEML++GF + I+ IL Sbjct: 113 ESQIRSLKRGAQVIVATPGRLIDLMERGVAKLENVENVVLDEADEMLNMGFTESIDAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P+ R L FSAT+S I +A+NY D + + S N ++++ LV D+ +A Sbjct: 173 GVPENRNTLFFSATMSREIERIARNYLHDHKEIVVGSRNEGAENVNHTYYLVQARDKYHA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ I+FC TR L + + AL G+LSQ +R +Q R Sbjct: 233 LKRIVDYYPKIYGIIFCRTRLETQEVADALIKDGYNAEALHGDLSQAQRDLTMQKFRQHN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQN 351 ++ IATDVAARG+D+ DL VI+ + + EN +HRSGRTGR G++G S+ +I + Sbjct: 293 TQLLIATDVAARGLDVDDLTHVINYGMPDDIENYIHRSGRTGRIGKRGASIAIIHLREKG 352 Query: 352 MQRRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--- 407 R ER ++ V V+ EP +E +++ L+ ++ DE ++ L Sbjct: 353 KIRNIERTIGKQFEVGVLPEP-------KEICTKQLYHVMDHLEHVEVDETQIAPFLPEV 405 Query: 408 ------LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459 L+K D + ++ F R + APE I P + R+ +R+ + G Sbjct: 406 FRKLDWLSKEDLIRRLVSDAFGRFLKYYANAPEIIQPGGKGDTPEARRERNRSERRERGP 465 Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGV 518 G + +++G + AR ++ ++ R + IG I + + +F EV D Sbjct: 466 HKADPGYARLFINLGKRDNFYAREIINLINRYVK-GKIQIGRIDLTNNCSFFEVPEEDAP 524 Query: 519 DLLRRTVKLDKG 530 +L++ ++ G Sbjct: 525 IVLKKMARVKVG 536 >gi|161528690|ref|YP_001582516.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160339991|gb|ABX13078.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus SCM1] Length = 440 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 192/335 (57%), Gaps = 8/335 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L++ G+ +QEA++ L +DV+ A TGSGKT AF L++ + Sbjct: 13 ILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSMLQEI-------Q 65 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P + L +APTRELA+Q+ E++ TG+ VA GG + + L+ G IVV Sbjct: 66 PKNGIQGLIMAPTRELAMQITDEIKKFGKYTGIKVATVYGGQGMGLQLDALERGVEIVVA 125 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ + + + +VLDEAD MLD+GF DDI FILD +P+ R M +FSAT+ Sbjct: 126 TPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVMSLFSATMP 185 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L++ Y + + + +++ ID +++ D+ +++ ++ + AIVF Sbjct: 186 TEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKPTKGQ-AIVF 244 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 CST+ K L + F VA+ G++SQ R ++ R G+A + +ATDVA+RGID+ Sbjct: 245 CSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVATDVASRGIDV 304 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 P +ELVI+ ++ + HR GRT RAG KG +V Sbjct: 305 PRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAV 339 >gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH 391-98] Length = 511 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 143/454 (31%), Positives = 244/454 (53%), Gaps = 20/454 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ + G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 27 QSVEKMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLEKVDTNKEMVQ-- 84 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 85 ----GIVIAPTRELAIQVGEELYKIGQHKRVRILPIYGGQDINRQIRALKKRPHIIVGTP 140 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 141 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPEP 200 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 201 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 260 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 261 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 320 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEP 371 + V + ++ +PE+ +HR GRTGRAG+ G++ +FV P+ M + + + R + Sbjct: 321 VTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAMLFVTPREMG-QLKNIERTTKRKMDRMK 379 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAG 427 AP+++ E QR++ + L +I+ D K++ + +L ++D + A L++ Sbjct: 380 APTLDEALE-GQQRLIAEKL-QSAIENDNLSYYKRIAEEMLEENDSVAVVAAALKM---- 433 Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461 + + TP+SL S S+ K GG RD Sbjct: 434 MTKEPDTTPISLTSEPPVISRGSK--KRSGGYRD 465 >gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305] gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis DSM 5305] Length = 475 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 187/340 (55%), Gaps = 1/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A+ + Y T +Q + L +D+L SAQTG+GKT AF L + L + Sbjct: 8 NLIAPIQRAIKAQNYTTPTPIQAQTIPEILNGRDILGSAQTGTGKTAAFALPILDYLGRQ 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N R P + P L + PTRELA+QVG V A+ GGV+ R+ RDL G Sbjct: 68 NRRPIP-NEPTVLVLVPTRELAIQVGDSFATYGRHLRVRHALIYGGVNQFRQVRDLNRGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+V TPGRL D + +++S L+ +DEAD M+D+GF D++ I+ P++R+ L F Sbjct: 127 HILVATPGRLLDLMNQGHIDLSRLELFAVDEADRMMDMGFLPDLKKIIREIPQERQSLFF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P I L++ D V V I E R I+ + V + + +++IL G Sbjct: 187 SATLPPKINELSRELLTDPVSVTIDPEVRSVEAIEQSLIYVDQQSKKDLLLDILNEEGIG 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ +R + L + +A+ G SQ R AL R+ + +V +ATDVAA Sbjct: 247 QTVVFTKTKFCANRLEEQLRKSGVSAIAIHGNKSQNARQKALLAFRNEKVKVLVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ + VI+ EL PE+ +HR GRTGRAG G+++ Sbjct: 307 RGIDVDGVTHVINFELPHEPESYVHRIGRTGRAGASGIAI 346 >gi|288925364|ref|ZP_06419298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae D17] gi|315606787|ref|ZP_07881796.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae ATCC 33574] gi|288337835|gb|EFC76187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae D17] gi|315251452|gb|EFU31432.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae ATCC 33574] Length = 613 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 136/398 (34%), Positives = 211/398 (53%), Gaps = 10/398 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE + + I A+ E G+ N VQE ++ L K DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEELGVSEDIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116 + A + A+ ++PTREL +Q+ +L G+ VA GG + Sbjct: 61 VVQKTDATD------KTTQAVILSPTRELCLQIADDLNAFSKYIDGLHVAAVYGGADIGP 114 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + R L++GA I+V TPGRL D I + + +VLDEADEML++GF + I I ++ Sbjct: 115 QIRTLKHGAQIIVATPGRLIDLINRGVAKLDQVNNIVLDEADEMLNMGFSESINAIFETL 174 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 P L+FSAT+S + +AKNY D + + S N +++ LV D+ A+ Sbjct: 175 PDDHNTLLFSATMSREVERIAKNYLHDHKEIVVGSRNEGAEHVNHIYYLVNAKDKYLALK 234 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 ++ ++ AI+FC T+ L + + AL G+LSQQ+R +Q R + Sbjct: 235 RVVDFYPHIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRRHTVQ 294 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+KG S+ +I + + Sbjct: 295 FLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTREKFKV 354 Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394 ++ ++ V PS E I ++ +++ D + D Sbjct: 355 RQIEKQIGKEFVDGTLPSPEEICKKQLYKVMNDIMKTD 392 >gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180] gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180] Length = 492 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|261839104|gb|ACX98869.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 52] Length = 492 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|325105194|ref|YP_004274848.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] gi|324974042|gb|ADY53026.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] Length = 608 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 197/340 (57%), Gaps = 8/340 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I A++E G+ N T +QE+ + L D + AQTG+GKT AFGL L L +N + Sbjct: 13 IVNAITELGFTNPTPIQESAIPVLLSGSNDFVGLAQTGTGKTAAFGLPLLE--LIDNTK- 69 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + P AL + PTREL +Q+ +L+ V V GG ++ + R+++ G IV Sbjct: 70 ---NHPQALILCPTRELCLQISNDLKNFSKNLKNVNVVAVYGGANIVNQLREIKRGVQIV 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGR+ D I K ++ S++ VVLDEADEML++GF+DDI IL ++P ++ +FSAT Sbjct: 127 VATPGRMLDIINRKAIDFSNVNYVVLDEADEMLNMGFQDDINDILSTTPDTKKTWLFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + +A+NY + + + +N +++I++ +V D+ A I+ ++ I Sbjct: 187 MPKEVRRIAENYMTNPHELTVGKQNSGNANIEHEYYIVKARDKYAAFKRIVDFNPDIFGI 246 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ + L + + +L G+LSQQ+R ++ R+ ++ IATDVAARGI Sbjct: 247 VFCRTKIETQEIAESLVKDGYNADSLHGDLSQQQRDKVMKRYREKSLQLLIATDVAARGI 306 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ ++ VI+ L EN HRSGRT RAG+ G+S+ +I Sbjct: 307 DVNNVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAII 346 >gi|254457791|ref|ZP_05071219.1| dead/deah box helicase domain protein [Campylobacterales bacterium GD 1] gi|207086583|gb|EDZ63867.1| dead/deah box helicase domain protein [Campylobacterales bacterium GD 1] Length = 453 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 134/378 (35%), Positives = 208/378 (55%), Gaps = 13/378 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N+P + + L E GY +T +Q L L KDV+ A+TGSGKT AFG+ L + Sbjct: 3 FSNLPLSKEMLHNLEEIGYKEMTPIQAEALPHILDGKDVIAQAKTGSGKTAAFGIGLLTK 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRD 120 L + R +L + PTRELA QV +EL L A V + GG + + Sbjct: 63 LQVKKFRVQ------SLILCPTRELADQVAKELRMLARATHNVKILTLCGGAAFGPQLGS 116 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L +GAHI+VGTPGR+ H++ L++ L+ +VLDEAD MLD+GF ++I +L + K++ Sbjct: 117 LSHGAHIIVGTPGRILKHLKKATLSLEDLEMLVLDEADRMLDMGFSEEINEVLSFTKKRK 176 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT + I ++KN Q +AV V S ++I R V + + IVNIL Sbjct: 177 QTLLFSATYTDEIMDISKNLQHEAVSVKTTS-TETANNITERFYEVNDHQKLDTIVNILS 235 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +N I+F +T+ + L + +A+ G+L Q ER++ L + V IA Sbjct: 236 NFKPENVIIFTNTKIEAKELAENLLKKKIDALAIHGDLEQYERNDVLVQFANRSCPVLIA 295 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+ ++ +VI+ +L E HR GRTGRAG+ G++ + Q A++ + Sbjct: 296 TDVAARGLDIKEMSMVINYDLPHGDETYTHRIGRTGRAGQDGLAFTLFS---QYEADKAY 352 Query: 361 REANVSVVWEPAPSVEAI 378 N + ++E A ++ + Sbjct: 353 EYKNETRLFEDAGELKTV 370 >gi|92113266|ref|YP_573194.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens DSM 3043] gi|91796356|gb|ABE58495.1| ATP-dependent RNA helicase CsdA [Chromohalobacter salexigens DSM 3043] Length = 568 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 169/518 (32%), Positives = 259/518 (50%), Gaps = 26/518 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P I L GY + +Q + L +DVL AQTG+GKT AF L L S L + Sbjct: 15 SLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLSRLDLQ 74 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 P L +APTRELA QV +++ G+ V GG + L+ G Sbjct: 75 R------REPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRRG 128 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A ++VGTPGR+ DH+ L + L A+VLDEADEML +GF DD++ ++ +PK + + Sbjct: 129 AQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVF 188 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I+ + +Y D +R+ I ++ + I+ R V + + A+ +L Sbjct: 189 FSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKLEALSRLLEVEPV 248 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AIVF TRA+ + + L ALSG+L Q R ++ ++ G+ V IATDVA Sbjct: 249 DAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIATDVA 308 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+P + V + +L + E HR GRTGRAGR G+++ QRR + R Sbjct: 309 ARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDMER--- 365 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLF----LDSI-QGD--EKKMVDVLLAK-HDPEKI 416 V + VE + + DA R ++ LF LD++ +G +++++D L+ +DP + Sbjct: 366 --VTGQQMQEVE-LPDEDAIRAHRNELFRKRVLDTLARGSDYQRELIDGLVDDGYDPVDL 422 Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS-RAFKVGGGSRDNFKGSSWFSLSVGS 475 A + R+G AP P G R R S R K R G + + +SVG Sbjct: 423 ACAMASMARSG-EAPIGRLP---KPGERRSRQSSGRDDKPNRRDRGPSAGMTRYRVSVGH 478 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 K + L+ L GI+ IG I ++ + VE+ Sbjct: 479 KDGVKPGQLVGALANEGGIDGGKIGRIDIRNAFSVVEL 516 >gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum CFBP2957] gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum CFBP2957] Length = 495 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 197/346 (56%), Gaps = 12/346 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I AL+E GY T +Q A + + +DV+ +AQTG+GKT F L + LL E N Sbjct: 26 ILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQNLLPEANTSA 85 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + L+ G I+ Sbjct: 86 SPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEIL 145 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF D++ I++ P R+ L+FSAT Sbjct: 146 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 205 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245 SP I LA +Y + + +A N ++ R V+ + D + A+V++LR + Sbjct: 206 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 263 Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVF +++ SR + L A+ G+ +Q ER L+ + G V +ATD Sbjct: 264 LPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLVATD 323 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 VAARG+D+ + VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 324 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 369 >gi|207723759|ref|YP_002254157.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] Length = 495 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 197/346 (56%), Gaps = 12/346 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I AL+E GY T +Q A + + +DV+ +AQTG+GKT F L + LL E N Sbjct: 26 ILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQNLLPEANTSA 85 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + L+ G I+ Sbjct: 86 SPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEIL 145 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF D++ I++ P R+ L+FSAT Sbjct: 146 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 205 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245 SP I LA +Y + + +A N ++ R V+ + D + A+V++LR + Sbjct: 206 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 263 Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVF +++ SR + L A+ G+ +Q ER L+ + G V +ATD Sbjct: 264 LPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLVATD 323 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 VAARG+D+ + VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 324 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 369 >gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952] gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952] Length = 522 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 199/354 (56%), Gaps = 10/354 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K E P+++ +A+ G+ T +Q + L +DV+ AQTG+GKT AFGL + Sbjct: 3 FKELELSPELL-KAVERSGFEEATPIQSETIPLALSGRDVIGQAQTGTGKTAAFGLPML- 60 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 ++ +S+ L L I+PTRELA+Q EL L V V GG + R+ R Sbjct: 61 ------EKIDTSSSHLQGLVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ HIVVGTPGR+ DHI L + ++ +VLDEADEML++GF +DIE I+ P Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIESIISKVPST 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI ++ + ++ V I ++ ID V ++ + + +L Sbjct: 175 RQTLLFSATMPPAIKSIGVKFMQNPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + I+F T+ V + L ++ + G+LSQQ+R + L+ ++G + + Sbjct: 235 DVQTPELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573] gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573] Length = 663 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 40 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 94 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 95 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 154 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 213 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 214 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 334 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387 >gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603] gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603] Length = 663 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 40 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 94 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 95 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 154 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 213 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 214 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 334 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387 >gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T] gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T] Length = 545 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 131/345 (37%), Positives = 200/345 (57%), Gaps = 5/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65 IP+++ +A+++ GY T +Q + + KDV+ AQTG+GKT F L L + Sbjct: 9 IPELL-QAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLHRIARHA 67 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 N SPA AL +APTRELA+QV ++ Y+K + +VC+ GGV + ++ +L+ Sbjct: 68 NTSTSPARHQTRALILAPTRELAMQVFESVK-TYSKHLPLRSVCVYGGVDIRPQQAELRR 126 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IV+ TPGRL DH+ K +N+S ++ +VLDEAD MLD+GF DI+ IL PK+R+ L Sbjct: 127 GIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLPKQRQSL 186 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA K+ + +A N I + V+ + N + ++LR+ Sbjct: 187 LFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLAHLLRHKP 246 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A+VF T+ R L A+ G+ QQ+R++ L+ + G+ RV +ATDV Sbjct: 247 DTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLRVLVATDV 306 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+ +L VI+ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 307 AARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLV 351 >gi|162382798|ref|YP_454063.2| ATP-dependent RNA helicase DeaD [Sodalis glossinidius str. 'morsitans'] Length = 622 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 164/544 (30%), Positives = 265/544 (48%), Gaps = 27/544 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL++ GY + +Q A + L +DVL AQTGSGKT AF L L + E Sbjct: 17 ILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNIKPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 +AP L +APTRELAVQVG ++ GV V GG + R L+ G +VV Sbjct: 72 -LAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRYDVQLRALRQGPQVVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E IL P + + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + + V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERIMKLTIPE 370 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI 423 P+ E + R + + ++ + M LLAK P E +AA L++ Sbjct: 371 VDLPTAEVLSTRRLAKFAAK--VQNQLESSDLDMYRALLAKLQPAEELDIETLAAALLKM 428 Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSR------AFKVGGGSRDNFKGSSWFSLSVGSKQ 477 + P ++P S++ R R R + R + + + VG Sbjct: 429 AQGE--RPLILSPDSVIERRPRREFCERDERREGGERPPRRERRDVGEMDLYRIEVGRDD 486 Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQL 533 E R ++ + I+ + IG I++ + +E+ + + RT L+K + + Sbjct: 487 GVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPMNM 546 Query: 534 KYLG 537 +++G Sbjct: 547 QFVG 550 >gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii] gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii] Length = 442 Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 132/343 (38%), Positives = 191/343 (55%), Gaps = 8/343 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + + L + G+ T +Q A + L +D+L A+TGSGKT+AF + L + E + Sbjct: 13 LADRLQQAGFTAPTPIQSAAIPLALEGRDLLAQAKTGSGKTLAFLIPLIERAVKEG--WK 70 Query: 71 PASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 PA + P AL +APTRELA+Q+ EL YA V GGV + R R L+ I Sbjct: 71 PAGSARSPRALVLAPTRELALQIEMELRK-YAPPSVTSLAVYGGVPIERHYRALRQPPMI 129 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 V+GTPGRL D + L++ ++ VV+DEAD+MLD GF DI+ IL P +R+ ++FSA Sbjct: 130 VIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRILQLLPSQRQTMLFSA 189 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRY-HGAK 245 T SP I TLA++ K+ R + + I + +V + S R I +L+ Sbjct: 190 TFSPEILTLAESMLKNPARTAVDPGVNTPTTITHAYYVVPSESSRVQLIHTLLQSPESGD 249 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++VFC + V R L V A++G SQ +R L R GR R +ATDVAA Sbjct: 250 QSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTLTAFRSGRLRTLVATDVAA 309 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RG+D+P + VIH EL NP + +HR+GRTGRA R G ++ ++ Sbjct: 310 RGLDVPSVSQVIHYELPGNPTSYVHRTGRTGRAERSGATLLIL 352 >gi|317180053|dbj|BAJ57839.1| ATP-dependent RNA helicase [Helicobacter pylori F32] Length = 492 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM 519] gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii] Length = 515 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 149/468 (31%), Positives = 255/468 (54%), Gaps = 29/468 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + T +QE I+ ++ D++ AQTG+GKT AFG+ L S + N Sbjct: 15 KAVLDMGFDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSKIEKGN------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL +APTRELA+QV +E+ L V GG + ++ R L+ IVV TP Sbjct: 69 KAVQALILAPTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGLKKNPQIVVATP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR DH+R +N+++++ V+LDEADEML +GF +DIE IL P +R+ L+FSAT+ Sbjct: 129 GRFMDHMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPSERQTLLFSATMPKR 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++++ + K V + ++ I+ R + + D+ +A+ ++ H + +I+F Sbjct: 189 IQSVSQKFMKSPQTVAVKNKTMTVDTIEQRYLDLKERDKFDALCRLMDIHCPELSIIFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L+ + V + G++ Q+ R L+ + G ++ +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVS-VVWE 370 + V + +L +PE+ +HR GRTGRAG+KG+S FV P+ +R L + S ++ + Sbjct: 309 VSHVFNFDLPQDPESYVHRIGRTGRAGQKGISFTFVTPR--EREYLELIEDTTKSKMLKQ 366 Query: 371 PAPSV----EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-IHR 425 PS+ +A + AQ+++ + + D ++ LL ++D K+ + L+ + + Sbjct: 367 HVPSIGDAKDARYRQAAQKLIG--IAESAKTHDLEEAAQKLLEEYDAVKLVSAALKMVTK 424 Query: 426 AGLCAPEEITPVSLV--------SGRDRFRDDSRAFKVGGGSRDNFKG 465 AP +T S V S R+ DS K G GS ++KG Sbjct: 425 QSSDAPVTLTDESPVRMKKKPMKSSGSRYSKDS---KPGSGS-SSYKG 468 >gi|251789631|ref|YP_003004352.1| ATP-dependent RNA helicase DbpA [Dickeya zeae Ech1591] gi|247538252|gb|ACT06873.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591] Length = 457 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 204/369 (55%), Gaps = 8/369 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P L+E GY+ +T +Q A L L KDV A+TGSGKT AFGL L L + Sbjct: 10 LPAAQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHL--DA 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 RF+ S L + PTRELA QV EL L + V GGV +R L + Sbjct: 68 GRFNTQS----LVLCPTRELADQVANELRRLARGMPNIKVLTLCGGVPFGLQRDSLTHAP 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H++V TPGRL DH++ + +++ L+ +VLDEAD MLD+GF D I+ ++ P + L+F Sbjct: 124 HVIVATPGRLLDHLKKETVSLDDLRTLVLDEADRMLDMGFADAIDEVIAQVPTPCQTLLF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT AI +++ Q+D + + I + + + ++ + V+ S + + + +L Sbjct: 184 SATWPEAIAAISRRIQRDPLIIEIDTVDELPA-VEQQFYEVSRSGKLDLLQKLLSREQPA 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VFC+T+ + L V+AL G++ Q++R L +G +RV +ATDVAA Sbjct: 243 SCVVFCNTKKDCQAVYEALTNSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ LE+VI+ ELS +PE +HR GRT RAG G+++ + +RA L + Sbjct: 303 RGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLKM 362 Query: 366 SVVWEPAPS 374 + W P P+ Sbjct: 363 KLNWHPLPT 371 >gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Enterococcus faecium DO] gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933] gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502] gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410] gi|258615088|ref|ZP_05712858.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO] gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162] gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317] gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04] gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C] gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082] gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A] gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B] gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01] gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Enterococcus faecium DO] gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933] gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502] gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410] gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317] gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162] gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01] gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B] gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A] gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C] gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04] gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082] Length = 503 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 195/354 (55%), Gaps = 10/354 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K E P+++ +++ G+ T +Q + L KDV+ AQTG+GKT AFGL + Sbjct: 3 FKELELSPELL-KSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML- 60 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 ++ P L L IAPTRELA+Q EL L V V GG + R+ R Sbjct: 61 ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ HIVVGTPGR+ DHI L + ++ +VLDEADEML++GF +DIE I+ P + Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + K+ V I ++ ID V ++ + + + Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVF T+ V + L ++ + G+LSQQ+R + L+ + G + + Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1] gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1] Length = 465 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 145/438 (33%), Positives = 233/438 (53%), Gaps = 30/438 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +Q + L+ KDV+ AQTG+GKT AFG+ L + N+ Sbjct: 15 KAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLIEKVDVTNEAIQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA+QV EL + A V V GG + R+ R L+ HI+VGTP Sbjct: 73 ----GLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIGRQIRALKKRPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L++ ++ VVLDEADEML++GF DDIE IL + P+KR+ L+FSAT+ Sbjct: 129 GRIIDHINRKTLHLENVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLLFSATMPEP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + V + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMNEPQIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRLLDIQAPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L + + G+LSQ +R + L+ ++G + +ATDVAARG+D+ Sbjct: 249 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+ G+++ FV P N++R +R Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIERTTKRKMER--- 365 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 +P EA+ QRI + L + +++ + K+ + LL +HD + A + Sbjct: 366 ---MKPPTLDEAL--EGQQRIAVEKL-IATVETENLSFYKRAAEELLEEHDSVSLVAACI 419 Query: 422 RIHRAGLCAPEEITPVSL 439 ++ L + TPV L Sbjct: 420 KM----LTKEPDTTPVQL 433 >gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470] gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470] gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464] Length = 492 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSKIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicaulis alexandrii HTCC2633] gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicaulis alexandrii HTCC2633] Length = 466 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 126/332 (37%), Positives = 192/332 (57%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+SE+GY T +Q + ++ D++ AQTG+GKT AF L L LLAEN + +P Sbjct: 33 AISEQGYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLPLVHQLLAENKQ-APGR 91 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + AL +APTRELA Q+ +++ A T + V GGV + + L G I+V TPG Sbjct: 92 SCRALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFGGVKAGPQIKALARGVDILVATPG 151 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + + + V+LDEAD+MLDLGF I +L ++R+ LMFSAT++PAI Sbjct: 152 RLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLLRMVGEERQTLMFSATMAPAI 211 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA ++ V + ++ ID + S + +A+++++ K AI+F T Sbjct: 212 RQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEASAKPDALIDLMAPEAGKRAIIFTRT 271 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R K L ++ + A+ G+ SQ +R+ AL + G A V +ATD+AARGID+ + Sbjct: 272 KYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKSGEAPVLVATDIAARGIDVDGV 331 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +LV++ EL + EN +HR GRT RAG G +V Sbjct: 332 DLVVNYELPNVAENYVHRIGRTARAGASGRAV 363 >gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223] gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223] Length = 643 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 20 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367 >gi|253582317|ref|ZP_04859540.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725] gi|251835856|gb|EES64394.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725] Length = 527 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 154/509 (30%), Positives = 255/509 (50%), Gaps = 38/509 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +ALS++GY T +Q A+ P L EKD++ AQTG+GKT AF L + +RF Sbjct: 18 KALSKKGYEKPTPIQ-ALTIPALLDGEKDIIGQAQTGTGKTAAFSLPIL-------ERFE 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A+ +APTRELA+QV E+ L + + GG S+ + R L+ G I+VG Sbjct: 70 PGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLKKGTDIIVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D + K + + +LK +LDEADEML++GF +D+E IL+S+ +RML FSAT+ Sbjct: 130 TPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDDKRMLFFSATMP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +AK + +D + + + D V D+ A+ I+ IVF Sbjct: 190 NEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVHERDKFEALCRIIDLTKDFYGIVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V+ L + + L G++SQ R L+ + + V +ATDVAARGID+ Sbjct: 250 CRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAARGIDV 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369 DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ + + Sbjct: 310 NDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKIVKTEIRK 368 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL---LAKHDPEKIAAGFLRIHRA 426 E P V+ D IQ + ++V+ L LA+++ + F + R Sbjct: 369 EKVPGVK-----------------DVIQAKKFRLVEELNHILAENNFD----NFKDLSRE 407 Query: 427 GLCAPEEITPVS--LVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 L + + V+ + + D+S ++ + G +++G K + L Sbjct: 408 LLNGEDAVDIVAALIKHSYEDVLDESNYNEINNSASLEKTGKVRLFVALGRKNDMTPKKL 467 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + M+ + ++ + + + V + +F+ V Sbjct: 468 VEMVTSKTKVDERKLKNVEVYENFSFLSV 496 >gi|90416373|ref|ZP_01224305.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium HTCC2207] gi|90332098|gb|EAS47312.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium HTCC2207] Length = 619 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 196/344 (56%), Gaps = 9/344 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + GY + VQEA + L K++L +AQTG+GKT AF L S L + Sbjct: 17 KAVQQLGYEQPSPVQEASIPILLEGKNLLGTAQTGTGKTAAFALPFLSKLDEKQ------ 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L + PTRELA+QV + YAK G V GG + + R L+ GA +VVG Sbjct: 71 KTPQVLVLTPTRELAIQVAEAFQS-YAKHIKGFHVLPIYGGADIGGQLRGLKRGAQVVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R + L++S +K ++LDEADEML +GF DD+E IL +P + + +FSAT+ Sbjct: 130 TPGRMLDHLRRRSLDLSQIKGLILDEADEMLRMGFIDDVETILAKTPPECQRTLFSATMP 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 PAI +A Y DA V+I ++ + I ++V + +A+ IL I+F Sbjct: 190 PAIKRVADKYLGDAEVVSIENKTKTVERIAQSHLMVKGHQKMDALTRILDVEQFDGMIIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T++S + L F AL+G+L+Q R + ++ G+ + +ATDVAARG+D+ Sbjct: 250 VRTKSSTLEIAEKLEARGFSSAALNGDLTQTVRERTINRLKKGQLDIVVATDVAARGLDV 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ ++ + E+ +HR GRTGRAGR+G ++ + Q R Sbjct: 310 ERISHVINYDVPYDNESYVHRIGRTGRAGREGKAIMFVTQKETR 353 >gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75] Length = 491 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|54302107|ref|YP_132100.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9] gi|46915528|emb|CAG22300.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9] Length = 623 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 161/521 (30%), Positives = 265/521 (50%), Gaps = 33/521 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L D L AQTG+GKT AF L + + + + Sbjct: 20 ALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLNKVDLSQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ + VLDEADEML +GF DD+ +I++ +P + ++FSAT+ P Sbjct: 134 GRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQRVLFSATMPPI 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IVFC 251 + + + ++ R+++A ENR S + + +V ++D A++ +L +A IVF Sbjct: 194 VKQIVDRFLRNPERIDVAGENRTVSQVSQQFWIVKGVEKDEAMIRMLETEENIDASIVFV 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR R L+ + AL G++ Q R + ++ G V +ATDV ARG+D+ Sbjct: 254 RTRQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHIKRGVIDVLVATDVVARGLDIQ 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVV 368 + V + ++ + E+ +HR GRTGRAGR G ++ ++ N M R ER+ + + Sbjct: 314 RITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTIERVTKSRMEEIQ 373 Query: 369 WEPAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 +V A R E ++Q+ + G ++ +DV D +AA L+ Sbjct: 374 LPNRDAVAAARLTRLGQELESQKEQATLEAFVELVGKLQETIDV-----DATTLAAMLLQ 428 Query: 423 IHRAGLCAPEEITPVSLVSGRDRF--------RDDSRAFKVGGGSRDNFKGSSW--FSLS 472 + G P +++ DR DD GG R + + W + L Sbjct: 429 -RQQGNRPLFYKGPDPMIAAIDREQQRRERRGNDDRGTRNERGGERRSNNSADWDTYQLQ 487 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 VG +Q + + ++ + G++++ IGAI++ P TFV++ Sbjct: 488 VGREQGIQVKDIVGAIANELGLSKEFIGAIKLAPSHTFVQL 528 >gi|325521922|gb|EGD00628.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. TJI49] Length = 464 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/358 (37%), Positives = 198/358 (55%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV++T +Q A L L D++ A+TGSGKT AF LAL S L A RF Sbjct: 22 LAQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDAR--RFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E S I R V ++R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTETERLHAVGMLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA ++G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQAQKRDVEWHP 372 >gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501] gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501] Length = 503 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 195/354 (55%), Gaps = 10/354 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K E P+++ +++ G+ T +Q + L KDV+ AQTG+GKT AFGL + Sbjct: 3 FKELELSPELL-KSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML- 60 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 ++ P L L IAPTRELA+Q EL L V V GG + R+ R Sbjct: 61 ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ HIVVGTPGR+ DHI L + ++ +VLDEADEML++GF +DIE I+ P + Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + K+ V I ++ ID V ++ + + + Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEVTADLIDQYYVRAKEYEKFDIMTRLF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVF T+ V + L ++ + G+LSQQ+R + L+ + G + + Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785] gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785] Length = 484 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 195/354 (55%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ I +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L ++D A+ I PTRELA+Q EL L V V GG + R+ R Sbjct: 61 QNLDKQHDSIQ------AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ I+VGTPGRL DH++ ++IS +K +VLDEADEMLD+GF DIE IL + K Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKIKTIVLDEADEMLDMGFIQDIESILKYASSK 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 + L+FSAT+ I + + + D V I + + ID V +++ + + ++ Sbjct: 175 HQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 A++F T+ V T+ L + + G+LSQ +R + L+ R G+ + + Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +P++ +HR GRTGRAG+ GMSV FV P + Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEI 348 >gi|72161844|ref|YP_289501.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Thermobifida fusca YX] gi|71915576|gb|AAZ55478.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Thermobifida fusca YX] Length = 562 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/377 (36%), Positives = 208/377 (55%), Gaps = 8/377 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL+E GY T++Q + L +D+L A TG+GKT AF L + L ++D Sbjct: 19 PELL-DALAEVGYEEPTAIQREAIPSLLEGRDLLGQAATGTGKTAAFSLPILHRL-PDSD 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R P AL + PTRELA+QV L + GG + R+ R L+ G + Sbjct: 77 R---GDTPSALILVPTRELALQVSEALHRYGRHLKARILPIYGGQPIGRQLRALERGVDV 133 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGR DHI L + ++ VVLDEADEMLD+GF +DIE I++ P+ R+ ++FSA Sbjct: 134 VVATPGRALDHIGRGTLVLDTVRTVVLDEADEMLDMGFAEDIEAIIEEVPENRQTVLFSA 193 Query: 188 TISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 T+ I +A+ + D VRV IA + + + A +VA + A+ +L Sbjct: 194 TMPDRIEGIARRHLTDPVRVRIARTSPAPGEEPKVRQNAYIVARPYKPAALGRVLDMESP 253 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A+VFC TR V + T+ L ++ AL G +SQ++R + +R G A + IATDVA Sbjct: 254 TAALVFCRTREEVDQLTETLNARGYRAEALHGGMSQEQRDRVMARLRGGTADLLIATDVA 313 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ L V++ + S E +HR GR GRAGR+G+++ ++ R + + R + Sbjct: 314 ARGLDIEHLTHVVNYNVPSATETYVHRIGRVGRAGREGVAITLVEPREHRMLKTIQRSTS 373 Query: 365 VSVVWEPAPSVEAIRER 381 + E P+V +R R Sbjct: 374 GPISVEKLPTVADLRAR 390 >gi|297569384|ref|YP_003690728.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925299|gb|ADH86109.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 612 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 172/553 (31%), Positives = 272/553 (49%), Gaps = 63/553 (11%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F +P I A+ E G+ T +Q + P L +D+L AQTG+GKT AF L L S Sbjct: 13 FSQLPLAPAIHRAVDELGFETPTPIQAESIPPLLAGRDLLGQAQTGTGKTAAFSLPLLSQ 72 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119 L E D+ P L +APTRELA+QV ++ +A+ G V GG ++ + R Sbjct: 73 L--EVDK----KYPQLLVLAPTRELALQVAEAMQ-SFARHLPGFQVLPLYGGQNMTLQLR 125 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 LQ GA +VVGTPGR+ DH+R L + L AVV+DEADEML +GF D +E IL+ +PK+ Sbjct: 126 RLQRGAQVVVGTPGRIQDHLRRGTLRLERLSAVVVDEADEMLKMGFIDAVEQILEHAPKE 185 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R++ +FSAT+ A+ +A + K+ V + I + I + V + +A+ +L Sbjct: 186 RQVALFSATMPTAVRKIAHRHLKNPVEIKIKRTTTSMAAITQQFWAVKGLHKLDALTRLL 245 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +VF T+ + + L F AL+G+++QQ R ++ ++ G + + Sbjct: 246 EAEEFEAVLVFVRTKVATVELAEKLEARGFAAAALNGDMTQQMREKTIEQVKSGALDIVV 305 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAER 358 ATDVAARG+D+ + VI+ ++ + E+ +HR GRTGRAGR+G + +FV P R R Sbjct: 306 ATDVAARGLDVARITHVINYDVPYDTESYIHRIGRTGRAGRQGKAIIFVTP-----RERR 360 Query: 359 LFREANVSVVWEPAP------------SVEAIRERDAQRILQDPL-FLDSIQGDEKKMVD 405 L + + AP V +E+ ++ + Q L F + + D ++ D Sbjct: 361 LLAAIEQASGQKIAPISLPSRQDISDRRVSLFKEKISEVMAQQELDFFEELIDDYQQEQD 420 Query: 406 VLLAKHDPEKIAAG--FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG----- 458 V DP +IAA +L L AP E GR R+D A GG Sbjct: 421 V-----DPRRIAAALSWLLQQERPLQAPAE------PEGRASSREDDSALAGGGKKWERE 469 Query: 459 --------SRDNFK-----GSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIR 503 RD + W + + VG + E ++ + + ++ + IGAI+ Sbjct: 470 PQRREHSRERDQERQHDRSHDQWRRYRIEVGRQHGVEPGNIVGAITNEANLSSREIGAIK 529 Query: 504 VQPDLTFVEVSAD 516 + + V++ D Sbjct: 530 IYDFFSLVDLPHD 542 >gi|332673089|gb|AEE69906.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83] Length = 492 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 238/456 (52%), Gaps = 27/456 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428 P+ I E + L D + I +++ ++ +P ++ L + + GL Sbjct: 386 PT---INENQIIKTLHDAKVSEGIISLYEQLTEIF----EPSQLVLKLLSLQFETSKIGL 438 Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVG 456 P+E TP + + + + +R+FK G Sbjct: 439 NQQEIDAIQNPKEKTPKT-SNKKTHQHEQTRSFKKG 473 >gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] Length = 438 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 191/362 (52%), Gaps = 7/362 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E+GY + +QE + L KDVL SAQTG+GKT F L + L ++ P Sbjct: 14 KAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVLQYL---SETKHPK 70 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA QV + + AV GGV + L+ G I+V T Sbjct: 71 YRPIRALVLTPTRELAAQVHDNVREYSKYVNIKSAVVFGGVKAASQIATLKRGVDILVAT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D K ++ + +LDEAD MLD+GF DI I+ P KR+ LMFSAT S Sbjct: 131 PGRLLDLHDQKAVSFKRIDVFILDEADRMLDMGFVRDINKIISYMPAKRQNLMFSATFSK 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA K+ V V A +N + ++ + + + +++ + ++F Sbjct: 191 EIKKLASGILKNPVEVETAPQNSTAKKVSHKVYQIDKKKKTEFTIKLIKDNNWNQVLIFT 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R T+ L + A+ G SQ R+ AL+ +D +V +ATD+AARG+D+P Sbjct: 251 RTKHGANRLTQNLIKSKISAAAIHGNKSQGARTKALKNFKDNTIKVLVATDIAARGLDIP 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV 368 L VI+ EL + PE+ +HR GRTGRAG KG ++ ++ Q+ E+L E S+V Sbjct: 311 LLPYVINYELPNVPEDYVHRIGRTGRAGAKGEAISLVCSEETEYQKEIEKLLNEKLTSIV 370 Query: 369 WE 370 E Sbjct: 371 VE 372 >gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323] gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4] gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus gasseri MV-22] gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC 33323] gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4] gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus gasseri MV-22] Length = 485 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ I +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L ++D A+ I PTRELA+Q EL L V V GG + R+ R Sbjct: 61 QNLDKQHDSIQ------AIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ I+VGTPGRL DH++ ++IS +K +VLDEADEMLD+GF DIE IL+ + K Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSK 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 + L+FSAT+ I + + + D V I + + ID V +++ + + ++ Sbjct: 175 HQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 A++F T+ V T+ L + + G+LSQ +R + L+ R G+ + + Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +P++ +HR GRTGRAG+ GMSV FV P + Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEI 348 >gi|296161858|ref|ZP_06844659.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] gi|295887877|gb|EFG67694.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] Length = 467 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 201/365 (55%), Gaps = 8/365 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P L++ GYV +T +Q A L L D++ A+TGSGKT AF LAL + L Sbjct: 15 SLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDVR 74 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124 N A A+ + PTRELA QV +E+ L A+ + V GG + + L++G Sbjct: 75 N------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHG 128 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHIVVGTPGR+ DH+ L + L +VLDEAD MLD+GF DDI ++ PK+R+ L+ Sbjct: 129 AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLL 188 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT I L++ + ++ V +A E ++ I R V +R +A+ +L ++ Sbjct: 189 FSATYPEGIVKLSQQFLRNPKEVKLA-ERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + + FC+T+ VL F +AL GEL Q+ER L + V +ATDVA Sbjct: 248 VSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVA 307 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ LE VI+ +++ +PE +HR GRTGRA ++G ++ + + R L + Sbjct: 308 ARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMSEMGRVGSLEQAQK 367 Query: 365 VSVVW 369 V W Sbjct: 368 RDVEW 372 >gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC BAA-2122] gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC BAA-2122] Length = 620 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 155/514 (30%), Positives = 261/514 (50%), Gaps = 23/514 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + ++ D L AQTG+GKT AF L L + L + Sbjct: 20 ALDGMGFVSPTPIQAASIPHLMKGSDALGKAQTGTGKTAAFSLPLLNKLELSQRK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L +G+ V GG S+ + R L++GAHIVVGTP Sbjct: 75 -PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALKSGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P Sbjct: 134 GRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ + +++A +N ++ + +V ++D A+ +L +IVF Sbjct: 194 LKNIVERFLRNPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSTMEEIQL 373 Query: 370 EPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 V A R L+ + L+ +K+ D L + D +AA L+ + Sbjct: 374 PHRDKVAAARLEKLGAELETEKEHKALEKFTELVEKLQDTL--ELDAATLAAILLKRQQG 431 Query: 427 G-----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQKA 479 + A I + R + R +S +F W + L VG +Q Sbjct: 432 KRPLFYIGADPMIEAIERDKQRRKERRESGRDGR-REGGRSFNNQDWDTYQLQVGREQGV 490 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + ++ L G+ + SIGAI++ T+V++ Sbjct: 491 QVKDIVGALANELGLTKGSIGAIKLAQGETYVQL 524 >gi|91775610|ref|YP_545366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91709597|gb|ABE49525.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] Length = 460 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/345 (37%), Positives = 193/345 (55%), Gaps = 3/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +AL E GY T +Q + L D++ AQTG+GKT AF L L LL Sbjct: 20 NLAPELLKALDESGYTTPTPIQAQAIPVVLEGSDLMAGAQTGTGKTAAFTLPLLQKLLPL 79 Query: 66 -NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + SPA P+ AL + PTRELA+QV ++ T + V GGV + + L Sbjct: 80 ASSSASPARHPVRALILTPTRELAIQVEESVKTYAKHTPLRSLVVFGGVDIKSQTPTLMK 139 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I+V TPGRL DH+ + + + ++ +VLDEAD MLD+GF D++ IL PK+R+ L Sbjct: 140 GVEILVATPGRLLDHVEQRTVQLGQVQMLVLDEADRMLDMGFMPDLKRILALLPKQRQNL 199 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT SP I L++ + V + +A N ++ + +LV + + + ++LR Sbjct: 200 MFSATFSPEIKKLSEEFLTKPVLIEVARSNATSENVTQKILLVESEHKQHVLADLLRKE- 258 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A IVF T+ S SR + L A+ G+ SQ ER AL + G+ +ATDV Sbjct: 259 ATQVIVFTKTKLSASRLARHLEREGIAAGAIHGDKSQLERIQALDAFKQGKITALVATDV 318 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+ L +V++ EL S E+ +HR GRTGRAG G+++ ++ Sbjct: 319 AARGLDIDQLPMVVNYELPSAAEDYVHRIGRTGRAGASGIAISLV 363 >gi|206562042|ref|YP_002232805.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia J2315] gi|198038082|emb|CAR54030.1| ATP-independent RNA helicase [Burkholderia cenocepacia J2315] Length = 465 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 198/358 (55%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV++T +Q A L L +D++ A+TGSGKT AF LAL + L A RF Sbjct: 22 LAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ + +A E S I R V +R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEIKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA + G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIEQAQKREVEWHP 372 >gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03] gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03] Length = 485 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ I +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L ++D A+ I PTRELA+Q EL L V V GG + R+ R Sbjct: 61 QNLDKQHDSIQ------AIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ I+VGTPGRL DH++ ++IS +K +VLDEADEMLD+GF DIE IL+ + K Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSK 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 + L+FSAT+ I + + + D V I + + ID V +++ + + ++ Sbjct: 175 HQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 A++F T+ V T+ L + + G+LSQ +R + L+ R G+ + + Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +P++ +HR GRTGRAG+ GMSV FV P + Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEI 348 >gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1] gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128] gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8] gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1] gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128] gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8] Length = 492 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 627 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 127/352 (36%), Positives = 199/352 (56%), Gaps = 10/352 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V T +Q A + L D L AQTG+GKT AF L + + + + Sbjct: 20 ALDNMGFVAPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLNKVNLSQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEMKTLGQNIKGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I K L++ + VLDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLISRKQLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPI 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + ++ R+++A ENR S ++ + +V ++D A+ +L +IVF Sbjct: 194 VKEIVDRFLRNPERIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETEDTDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361 + V + ++ + E+ +HR GRTGRAGR G ++ ++ N M R ER+ + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTIERVTK 365 >gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451] gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451] Length = 643 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 20 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367 >gi|152993738|ref|YP_001359459.1| ATP-independent RNA helicase DbpA [Sulfurovum sp. NBC37-1] gi|151425599|dbj|BAF73102.1| ATP-independent RNA helicase DbpA [Sulfurovum sp. NBC37-1] Length = 453 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/362 (34%), Positives = 204/362 (56%), Gaps = 16/362 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA 64 NIP+ + L G+ +T +Q+ + P L+ KD+L ++TGSGKT+AFG+ A+ T + Sbjct: 9 NIPEALLGTLETLGFTTMTEIQQKSIGPILKGKDILAQSKTGSGKTLAFGIPAVMGTDVK 68 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQN 123 N P + I PTRELA QV EL + A K + + GGV + + L Sbjct: 69 SN-------KPQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLAK 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHI++GTPGR+ DH+ L + +K +VLDEAD MLD+GF ++I I + PK+++ L Sbjct: 122 GAHILIGTPGRIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNMPKQKQTL 181 Query: 184 MFSATISPAITTLAKNYQKD--AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT P I +LAK KD ++V+ E + +++ Y D+ + ++ Sbjct: 182 LFSATFPPKIESLAKALLKDPLTIKVDTVQEAMKINELVYET-----PDKFKTLNALIGS 236 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + + ++FC+T+A V L + V+ + G+L Q+ER+ A+ + + R+ +AT Sbjct: 237 YKPDSLLIFCNTKAEVISLADRLQQRGHSVIDIHGDLDQRERNEAVILFSNRSKRIMVAT 296 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVA+RG+D+ D+ LVI+ +L + E HR GRTGRA GM++ + N + + Sbjct: 297 DVASRGLDIKDISLVINYDLPFDKEVYTHRIGRTGRADATGMAISLYAPNDSEKCSWITS 356 Query: 362 EA 363 +A Sbjct: 357 QA 358 >gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30] Length = 492 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 238/456 (52%), Gaps = 27/456 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428 P+ I E + L D + I +++ ++ +P ++ L + + GL Sbjct: 386 PT---INENQIIKTLHDAKVSEGIISLYEQLTEIF----EPSQLVLKLLSLQFETSKIGL 438 Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVG 456 P+E TP + + + + +R+FK G Sbjct: 439 NQQEIDAIQNPKEKTPKT-SNKKTHQHEQTRSFKKG 473 >gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16] Length = 492 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341] gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341] Length = 639 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 20 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367 >gi|187779626|ref|ZP_02996099.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC 15579] gi|187773251|gb|EDU37053.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC 15579] Length = 481 Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/409 (32%), Positives = 221/409 (54%), Gaps = 15/409 (3%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN + I ++L + GY N + VQ+ ++ L++KD++V ++TGSGKT AF + + Sbjct: 6 FENYKLSDEILKSLRKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVCEK 65 Query: 62 L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L L E D P L + PTRELA+Q+ E+ + + G + ++R+ Sbjct: 66 LELEEKD-------PQVLVLTPTRELALQIKEEISNIALYKRLRCTAIFGKQPMSLQKRE 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ H+VVGTPGR DHI + LN+ +K +LDEADEML++GF D +E ++ PK R Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLNLKKIKYFILDEADEMLNMGFIDQVEAVIKRLPKDR 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++FSATI I L K Y + +NI EN I+ V ++ + + I+ Sbjct: 179 VTMLFSATIPDKIENLCKRYMNNPENININPENITTKTINQCYYEVEGKNKFSLLQKIIY 238 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 N+I+FC+TR V K + + F +AL G + Q++R ++ + G+ + + Sbjct: 239 KEVVDNSIIFCNTREKVDEILKYMKKEGFNAIALHGGMEQKDRLETMKKFKQGQFQFLVC 298 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGI + ++ VI+ E+ E+ +HR GRTGRAG++G+++ I N R + + Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIE 358 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDV 406 + + PS+E + + ++I ++ + +Q D KK D+ Sbjct: 359 DYIDKEISKREEPSLEEVNK--GKKIFEENIKDRLKIKVQKDNKKQKDI 405 >gi|237510128|ref|ZP_04522843.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein [Burkholderia pseudomallei MSHR346] gi|235002333|gb|EEP51757.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein [Burkholderia pseudomallei MSHR346] Length = 465 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 199/364 (54%), Gaps = 8/364 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 23 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + +V + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 197 AKLSQQFLRHPKKVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F V+AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375 Query: 374 SVEA 377 ++A Sbjct: 376 ELKA 379 >gi|16803286|ref|NP_464771.1| hypothetical protein lmo1246 [Listeria monocytogenes EGD-e] gi|224499083|ref|ZP_03667432.1| hypothetical protein LmonF1_05030 [Listeria monocytogenes Finland 1988] gi|224501811|ref|ZP_03670118.1| hypothetical protein LmonFR_04752 [Listeria monocytogenes FSL R2-561] gi|284801628|ref|YP_003413493.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578] gi|284994770|ref|YP_003416538.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923] gi|16410662|emb|CAC99324.1| lmo1246 [Listeria monocytogenes EGD-e] gi|284057190|gb|ADB68131.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578] gi|284060237|gb|ADB71176.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923] Length = 470 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 194/341 (56%), Gaps = 13/341 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T VQ+A++ L +D++ +QTGSGKT AF + +A + E ++ Sbjct: 10 IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELA+QV E + V A G +++ +L HIVVG Sbjct: 68 ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PK+R+ L FSAT+ Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ + + + +ASE + + I + V + +++ + ++L +AI+F Sbjct: 184 EEMQDLIKRYQDNPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIF 239 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T +L + + G L Q++R A+ + G++R IATDVA RGID+ Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ++ LVI+ +L EN +HR GRTGRAG+ G ++ + N Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 337 >gi|300690871|ref|YP_003751866.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum PSI07] gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum PSI07] Length = 495 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 197/346 (56%), Gaps = 12/346 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I AL+E GY T +Q A + + +DV+ +AQTG+GKT F L + LL E N Sbjct: 26 ILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQNLLPEANTSA 85 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + L+ G I+ Sbjct: 86 SPARHPVRALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQTEQLRRGVEIL 145 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF D++ I++ P R+ L+FSAT Sbjct: 146 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 205 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245 SP I LA +Y + + +A N ++ R V+ + D + A+V++LR + Sbjct: 206 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 263 Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVF +++ SR + L A+ G+ +Q ER L+ + G V +ATD Sbjct: 264 LPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATD 323 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 VAARG+D+ + VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 324 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 369 >gi|146307171|ref|YP_001187636.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina ymp] gi|145575372|gb|ABP84904.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp] Length = 560 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 199/344 (57%), Gaps = 12/344 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++ AL+ GY + +Q + L D++ AQTG+GKT AF L L S Sbjct: 15 PNILA-ALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLS------- 66 Query: 68 RFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124 + PA P L +APTRELA+QV E Y+K GV V GG + + + L+ G Sbjct: 67 KIDPAKREPQVLILAPTRELALQVATAFET-YSKQMPGVNVVAVYGGAPMGPQLKALRMG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A I+V TPGRL DH+R +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++ Sbjct: 126 AQIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSVL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ +I +A+ + ++ + IA++ + S I+ +++ + NA++ +L Sbjct: 186 FSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLLEVEDF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I F T+ + L F+ AL+G+++Q +R ++ ++DGR + +ATDVA Sbjct: 246 DALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+P + V + ++ +PE+ +HR GRTGRAGR G ++ ++ Sbjct: 306 ARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLV 349 >gi|290580897|ref|YP_003485289.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025] gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025] Length = 517 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 205/354 (57%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E ++ + I A+++ G+V + +QE + L KDV+ AQTG+GKT AFGL Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + + N+ AL IAPTRELAVQ EL + V V GG S+ ++ + Sbjct: 61 NKIDVINNVVQ------ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIK 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+ P+ Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPET 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ AI + + K+ V I ++ +D + V +++ + + ++ Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIVAKELTTDLVDQYYIRVKENEKFDTMTRLM 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V T+ L ++ + G+L Q +R L+ ++ + + Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348 >gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908] Length = 491 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L + +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINKHERAEAIMRLLDTQAPEKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R +++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27] gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27] Length = 492 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELLEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000] gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum GMI1000] Length = 495 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/346 (37%), Positives = 197/346 (56%), Gaps = 12/346 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I AL+E GY T +Q A + + +DV+ +AQTG+GKT F L + LL + N Sbjct: 26 ILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQNLLPDANTSA 85 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + L+ G ++ Sbjct: 86 SPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTEQLRRGVEVL 145 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF D++ I++ P R+ L+FSAT Sbjct: 146 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 205 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245 SP I LA +Y + + +A N ++ R V+ + D + A+V++LR + Sbjct: 206 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 263 Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVF +++ SR + L A+ G+ +Q ER L+ + G V +ATD Sbjct: 264 LPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGTVDVLVATD 323 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 VAARG+D+ + VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 324 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 369 >gi|78063799|ref|YP_373707.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383] gi|77971684|gb|ABB13063.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383] Length = 465 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/358 (37%), Positives = 198/358 (55%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV++T +Q A L L +D++ A+TGSGKT AF LAL + L A RF Sbjct: 22 LAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMILCPTRELADQVTQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V +A E S I R V +R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEVKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA + G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIEQAQKREVEWHP 372 >gi|332878110|ref|ZP_08445839.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683848|gb|EGJ56716.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 582 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 155/540 (28%), Positives = 267/540 (49%), Gaps = 44/540 (8%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56 M +FE + + I A+++ G+ + +Q+ + P L E D++ AQTG+GKT AFG Sbjct: 1 MNLFEQLGLDEPILRAITDMGFETPSEIQQKAI-PTLLEDDTDMVALAQTGTGKTAAFGF 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L L+ + + + L ++PTREL +Q+ EL+ YAK V V GG S+ Sbjct: 60 PLLQ-LIDTDSKLTQG-----LILSPTRELCLQIASELKN-YAKYLPKVNVVAVYGGASI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ GA I+V TPGR+ D IR ++ISH+ VLDEADEML++GF +DI IL Sbjct: 113 EEQARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 +PK++ +FSAT+ + +A+ + + + + + + N+ S + + +V R A Sbjct: 173 HTPKEKSTWLFSATMPNEVARIARQFMRKPIEITVGTRNQASSTVQHEYYVVNGRHRYQA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + + + ++VFC T+ + L E + AL G+LSQ +R ++ R + Sbjct: 233 LKRLADANPDIFSVVFCRTKKDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQ 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARGID+ D+ VIH +L E HRSGRTGRAG+ G+S+ ++P++ R Sbjct: 293 IQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVLVPKSELR 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRE-------RDAQRILQDPLFLDSIQGDEKKMVDVL 407 + + + + + P+ I E + + +P D + K++ + Sbjct: 353 KIKEIEKIIKQPFEQKALPTGIEICEIQLYHLANSLKNVEVNPAIEDYLPAIYKELQHID 412 Query: 408 LAKHDPEKIAAGFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464 + + A F R ++ PEE D++ + GG S Sbjct: 413 REELIKKIFAVEFTRFFNYYKNAEVLPEE---------------DAKESRKGGDS----- 452 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 G + +++G + + + L L + + R + + V+ +F AD DL+ T Sbjct: 453 GEVRYFINIGERDGYDWKTLKDFLKATLNLGRDDVFKVDVKNSFSFFNTEADQADLVMST 512 >gi|168185435|ref|ZP_02620070.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str. Eklund] gi|169296498|gb|EDS78631.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str. Eklund] Length = 476 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/406 (33%), Positives = 209/406 (51%), Gaps = 12/406 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY N T VQE + L+ KD++V +QTGSGKT +FG+ L + EN + P AL Sbjct: 20 GYKNPTEVQEKTIPIVLQGKDIIVKSQTGSGKTASFGIPLCEKVKLENKK------PQAL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELAVQ+ ++ + V G V ++ L+ HIVVGTPGR DH Sbjct: 74 ILTPTRELAVQIKEDISNIGRFKKVKCVAVYGKEPVSIQKNQLKQRVHIVVGTPGRTFDH 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ L++S +K +++DEAD+ML++GF D +E I+ R ++FSAT+ I L K Sbjct: 134 IQKGNLDLSDVKYLIIDEADKMLNMGFIDQVEDIIKRLSTDRITMLFSATLEERIEKLCK 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 Y + ++ I EN I+ V S R N + ++ +AI+FC+T+ V Sbjct: 194 RYMNNPEKIEIKRENVTTDVIEQEYYKVDHSKRFNTLTKVIYAEVPDSAIIFCNTKVEVG 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + F AL G + Q++R + + G+ + +ATDVAARGID+ ++ VI+ Sbjct: 254 NVANKMKNEGFNAKALHGGMDQKDRLYTINDFKRGKFQFLVATDVAARGIDVEEITHVIN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378 E+ E +HR GRTGRAG KG S+ + +R + SV + P E I Sbjct: 314 YEVPVEKEGYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEIEEYIGYSVPEKEIPQEEEI 373 Query: 379 RERDA---QRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIAAG 419 + ++ Q P F ++G E KK+ + + +K+ AG Sbjct: 374 EKGKKLFEEKARQRPKF-KKVKGHEIDKKITKIHINAGKKKKVRAG 418 >gi|120612881|ref|YP_972559.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax citrulli AAC00-1] gi|120591345|gb|ABM34785.1| ATP-dependent RNA helicase DbpA [Acidovorax citrulli AAC00-1] Length = 477 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/339 (38%), Positives = 195/339 (57%), Gaps = 9/339 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ L + GY +T +Q A L P L +D++ A TGSGKT AFGLAL L Sbjct: 26 PEVLAN-LRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLERL--NPR 82 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF A AL + PTRELA QV E+ L A+ + V GGV + + L++GAH Sbjct: 83 RF----AVQALVLCPTRELADQVAAEIRRLARAQENIKVVTLCGGVPLRGQAASLEHGAH 138 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L++ L VLDEAD MLD+GF +DI + P R+ L+FS Sbjct: 139 VVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTLLFS 198 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I +A+ + KD R+ + +++ + I R V +R +A+ +L + ++ Sbjct: 199 ATYPEGIERIARQFMKDPQRIVVQAQHAE-GKIGQRWYEVQERERLHAVSQLLNHFRPES 257 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI FC+T+ +VL F +AL G+L Q++R L + V +ATDVAAR Sbjct: 258 AIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVATDVAAR 317 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 GID+ L+ VI+ +++ +PE +HR GRTGRA +G+++ Sbjct: 318 GIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLAL 356 >gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171] Length = 525 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 145/444 (32%), Positives = 238/444 (53%), Gaps = 30/444 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 13 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 73 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKFPQIVVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + +++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 127 TPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AI+F Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIIF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M ++R + L Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 366 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA Sbjct: 367 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-SDYKTYANQLLEKYDATDIAAA 417 Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443 L++ L + TPV + R Sbjct: 418 MLKM----LAKEPDKTPVHITEER 437 >gi|194246516|ref|YP_002004155.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali] gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali] Length = 531 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/433 (32%), Positives = 236/433 (54%), Gaps = 24/433 (5%) Query: 3 IFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 +FEN +PQ +AL E ++ T++Q +++ + D++ AQTG+GKT AFG+ + Sbjct: 4 LFENFNILPQT-QKALKELNFLKPTAIQNLVISEMIEGYDIIGQAQTGTGKTFAFGIPII 62 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118 + +L + PTRELA+QV +E + L + +AV GG S ++ Sbjct: 63 EKIDLN------IKQTQSLILCPTRELALQVFQEFKKLIKFYVEIKIAVIYGGESYIKQF 116 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ HI++ TPGR+ D + K ++ S LK + LDEADEML++GF++ +E IL PK Sbjct: 117 KVLETKPHIIIATPGRVIDLLERKKIDFSGLKILTLDEADEMLNMGFQEALETILQKIPK 176 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 KR+ ++FSAT+ P I +A YQ + + + +N S + LV D+ +V + Sbjct: 177 KRQTVLFSATLPPTIQKIANKYQNNPKVLKVYQKNIAVSSVQQFYFLVKEFDKLKLLVRL 236 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + I+F +T+ V L E+ F V L G+L Q +R + R+ + ++ Sbjct: 237 LDLENPNSVIIFANTKKDVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKIKIL 296 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RR 355 IATDVAARGID+ + +VI+ +LS E +HR GRTGRAG KG++ FV P + + Sbjct: 297 IATDVAARGIDISSITMVINYDLSRQNEIYVHRIGRTGRAGLKGLAYSFVAPSKLSQLKS 356 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAK 410 E +E ++++ P V+ I+E+ + Q+ +F + I+ + + +++ LL Sbjct: 357 LENYLKE---KLIFKTIPKVKDIQEKKLKN-FQEKIF-EMIKNNPQEDINDELIKNLLDN 411 Query: 411 HDPEKIAAGFLRI 423 D ++I L + Sbjct: 412 FDNKQIIKALLNL 424 >gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL F2-515] Length = 394 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 197/343 (57%), Gaps = 7/343 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 13 IVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 73 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + H++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 127 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREM 349 >gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018] gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017] Length = 491 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L + +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R +++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|294505859|ref|YP_003569917.1| Cold-shock DEAD-box protein A [Salinibacter ruber M8] gi|294342187|emb|CBH22965.1| Cold-shock DEAD-box protein A [Salinibacter ruber M8] Length = 478 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 198/339 (58%), Gaps = 10/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ L VQ + L +D++V +QTGSGKT AF L L + + + Sbjct: 54 QAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQ-- 111 Query: 73 SAPLALAIAPTRELAVQVGRELEWL---YAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128 L + PTRELA Q+ E E + +T + AV I GGV + L+NGA +V Sbjct: 112 ----VLILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNGAQVV 167 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 +GTPGR+ DHI+ + S L+ +VLDEADEML +GF D++ I++ P R M+SAT Sbjct: 168 IGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSAT 227 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P + ++A+ + D ++++++ + +YR LV D+D + +L ++A+ Sbjct: 228 MPPKVRSVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESAL 287 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +T+ VS K L+ + + +SG+LSQ++R AL +R+G+ R+ +ATDVAARGI Sbjct: 288 IFANTKREVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGI 347 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 D+ DL V ++ + E ++HRSGRT RAG +G ++ + Sbjct: 348 DVSDLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVL 386 >gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 659 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 172/541 (31%), Positives = 258/541 (47%), Gaps = 34/541 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GY + +Q + + +D++ A TG+GKT AF L + L A+ R S + Sbjct: 104 ALDELGYERPSPIQAEAIPSLIDGRDLIGQAATGTGKTAAFALPMLQRL-AQERRGSRGT 162 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 APL L +APTRELA+QV + V GG + + L+ G +VV TPG Sbjct: 163 APLGLVLAPTRELAMQVTEAIARYGKGLRARVLAVYGGAPIGPQLGALKRGVDVVVATPG 222 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R D I L++ L+ VVLDEADEMLD+GF +DIE IL ++P R+ ++FSAT+ I Sbjct: 223 RAIDLINRGALSLDELEVVVLDEADEMLDMGFVEDIETILQATPDTRQAVLFSATMPRRI 282 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 LA+ Y D V V I E + + A +V S A+ IL AIVF Sbjct: 283 EVLARTYLTDPVLVRIQREEVPEGEAPRVRQTAYMVPRSHTTAALGRILELERPTAAIVF 342 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TRA V T+ L + AL G + Q+ R+ + +R+GR + +ATDVAARG+D+ Sbjct: 343 CRTRADVDAVTEALTGRGLRAEALHGGMDQEHRTRVVDRLRNGRTDLLVATDVAARGLDI 402 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSV 367 L V++ ++ +PE+ +HR GR GRAGR+G+++ V P +++ R ERL Sbjct: 403 DQLTHVVNHDVPKSPESYVHRIGRVGRAGREGVAITLVAPASVRHLRNIERLTGTPVPVA 462 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKHDPEKIAAGFL 421 + R + L++ L D M+ L + D ++AA + Sbjct: 463 PVPTVADLAGARVERTKVALRERLLTDRQSAGRGADDGVAAMIASLAEEFDAVEVAAAAV 522 Query: 422 RIHRAGLCAPEEITPVSLVS----------------GRDRFRDDSRAFKVGGGSRDNFKG 465 RI R APE+ + +VS GR F G G R G Sbjct: 523 RIARDVSGAPEDEIDIPVVSAPREGRRERDGRGGPAGRREF-----GGSRGQGPRPPKAG 577 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 ++ +S G + ++ L S ++ + IGAI++ VEV D + R + Sbjct: 578 TTRLFVSAGRAAGVRPQDIVGALANESRLSGRDIGAIQIHERHALVEVPEHAADEVLRAL 637 Query: 526 K 526 + Sbjct: 638 R 638 >gi|146313234|ref|YP_001178308.1| ATP-dependent RNA helicase DeaD [Enterobacter sp. 638] gi|145320110|gb|ABP62257.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. 638] Length = 655 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 194/346 (56%), Gaps = 8/346 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 72 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S LK +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + KD V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSVTTRPDISQTFWSVHGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQSLREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERR 355 >gi|319940808|ref|ZP_08015147.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis 3_1_45B] gi|319805690|gb|EFW02471.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis 3_1_45B] Length = 601 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 144/412 (34%), Positives = 212/412 (51%), Gaps = 12/412 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQ++ +L+ G+ T +QEA + L DVL A TG+GKT AF L L + Sbjct: 11 PQLVS-SLTALGFEEPTPIQEAAIPAILAGSDVLGQAATGTGKTAAFALPLIERWALGKE 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 S P+ L + PTREL +QV G++V GG R+ R L+ G H+ Sbjct: 70 ----PSDPVILVLTPTRELCLQVSESFHSYGRDAGIIVTPIYGGQEYGRQIRSLKRGTHV 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGR DHI L + +KAVVLDEADEMLDLGF D+++ I ++ P+ + +FSA Sbjct: 126 VVATPGRALDHINRGTLKLDAVKAVVLDEADEMLDLGFADELDAIFEALPEGVQTALFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGA 244 T+ P I +A + K+ VR+ IA E + + A +V + R A+ IL Sbjct: 186 TLPPRIAKIADEHLKNPVRIAIAKEETPEGEAPRVPQIAYIVGRNYRTAALGRILDLEDP 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AI+F TR V T+ L + V AL G L Q R ++ R G+ +ATDVA Sbjct: 246 ELAIIFARTRNEVDELTEALRVRGYSVEALHGGLDQPTRDRVMRNARSGKIDAIVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGIDL +L VI+ + ++ E +HR GRTGRAGR G ++ ++ R L R Sbjct: 306 ARGIDLENLTHVINFGIPASYETYVHRIGRTGRAGRTGTAITILEPREHRHIRALERATR 365 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK---MVDVLLAKHDP 413 + PS ++ + + + + + QG ++ +V+ L +HDP Sbjct: 366 SKIEIRTVPSATDVQAKRLE-VTRGAIAEILAQGGLERYNVIVEALCEEHDP 416 >gi|330900813|gb|EGH32232.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 459 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 19 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 76 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +PK+R+ L+FSAT I Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPKRRQTLLFSATYPAGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368 >gi|304312547|ref|YP_003812145.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium HdN1] gi|301798280|emb|CBL46502.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium HdN1] Length = 716 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 125/337 (37%), Positives = 196/337 (58%), Gaps = 8/337 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFSP 71 + E G+ + T +Q L L+++D++ AQTG+GKT AF + + TLL E +R++ Sbjct: 279 IDELGFSHCTPIQSEALPLSLKQRDIIGKAQTGTGKTAAFLITIIQTLLTEPEQEERYN- 337 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVG 130 P AL +APTRELA+Q+ ++ L T + + +GG+ ++++ LQ+ IVVG Sbjct: 338 -GEPRALILAPTRELALQIEKDALPLLKHTSLNMVSIVGGMDYKKQQKHLQDEIVDIVVG 396 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188 TPGRL D +RGK L +S + +V+DEAD MLD+GF D++ ++ +P K R+ L+FSAT Sbjct: 397 TPGRLIDFVRGKDLFLSETEILVIDEADRMLDMGFIPDVKRLVRETPYKTYRQTLLFSAT 456 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA N+ D ++ I E+ ++ +D + +V + N + N++ + Sbjct: 457 FTRDIINLASNWTTDPAQIEIEPESVANASVDQKIYIVTAEQKINVLYNLITQQELDRVM 516 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF + R T L +V LSGE+ Q +R L+ R+GR RV +ATDVA RGI Sbjct: 517 VFVNRRDETRDLTTRLKALGLRVAMLSGEIPQHKRLRTLENFRNGRLRVMVATDVAGRGI 576 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + + V++ L +PE+ +HR GRTGRAG G SV Sbjct: 577 HIEGISHVVNYTLPEDPEDYVHRIGRTGRAGATGTSV 613 >gi|254830000|ref|ZP_05234655.1| hypothetical protein Lmon1_01525 [Listeria monocytogenes 10403S] Length = 470 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 194/341 (56%), Gaps = 13/341 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T VQ+A++ L +D++ +QTGSGKT AF + +A + E ++ Sbjct: 10 IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELA+QV E + V A G +++ +L HIVVG Sbjct: 68 ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI LN+ + +VLDE DEML +GF D +E IL PK+R+ L FSAT+ Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K YQ + + + +ASE + + I + V + +++ + ++L +AI+F Sbjct: 184 EEMQDLIKRYQDNPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIF 239 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T +L + + G L Q++R A+ + G++R IATDVA RGID+ Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ++ LVI+ +L EN +HR GRTGRAG+ G ++ + N Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 337 >gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551] gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551] Length = 566 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 197/346 (56%), Gaps = 12/346 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I AL+E GY T +Q A + + +DV+ +AQTG+GKT F L + LL E N Sbjct: 97 ILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQNLLPEANTSA 156 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + L+ G I+ Sbjct: 157 SPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEIL 216 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF D++ I++ P R+ L+FSAT Sbjct: 217 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 276 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245 SP I LA +Y + + +A N ++ R V+ + D + A+V++LR + Sbjct: 277 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 334 Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVF +++ SR + L A+ G+ +Q ER L+ + G V +ATD Sbjct: 335 LPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLVATD 394 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 VAARG+D+ + VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 395 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 440 >gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7] Length = 492 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 193/336 (57%), Gaps = 7/336 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V + L N E+ +HR GRTGRAG+KGM++ ++ Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLV 361 >gi|297379472|gb|ADI34359.1| ATP-dependent RNA helicase [Helicobacter pylori v225d] Length = 492 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSKIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|53716164|ref|YP_106468.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344] gi|67639524|ref|ZP_00438373.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei GB8 horse 4] gi|254203477|ref|ZP_04909838.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei FMH] gi|254205355|ref|ZP_04911708.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei JHU] gi|52422134|gb|AAU45704.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344] gi|147745716|gb|EDK52795.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei FMH] gi|147754941|gb|EDK62005.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei JHU] gi|238520075|gb|EEP83538.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei GB8 horse 4] Length = 465 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 23 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + RV + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVKWHPLA 375 Query: 374 SVEA 377 ++A Sbjct: 376 ELKA 379 >gi|119898413|ref|YP_933626.1| ATP-dependent RNA helicase [Azoarcus sp. BH72] gi|119670826|emb|CAL94739.1| ATP-dependent RNA helicase [Azoarcus sp. BH72] Length = 650 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 177/563 (31%), Positives = 279/563 (49%), Gaps = 64/563 (11%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + +AL++ GY + +Q A + L D+L AQTG+GKT AF L + + L + Sbjct: 12 LPAPLLQALADVGYETPSPIQAACIPHLLAGHDILGEAQTGTGKTAAFALPMLARLDLAD 71 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P L + PTRELA+QV + + + V GG S+ + R L GA Sbjct: 72 RR------PQVLVLTPTRELAIQVAEAFQKYAHHLRDFHVLPLYGGQSMVVQLRQLSRGA 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH+ L + L +VLDEADEML +GF +D+E+IL+ +P R+ +F Sbjct: 126 QIIVGTPGRVMDHLERGSLKLDTLSGLVLDEADEMLRMGFIEDVEWILEHTPSGRQTALF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI +A + ++ V I + S I R LV D+ +A+ IL Sbjct: 186 SATMPDAIRRVAHQHLREPKEVKIRAATSTVSAISQRYWLVRGVDKLDALTRILDAEEKL 245 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF T+ + + L + AL+G+++Q R ++ +++G + +ATDVA Sbjct: 246 DAAIVFVRTKTATTELADKLEARGYAAAALNGDMTQGLRERVIEQLKNGSLDIVVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFR 361 ARGID+P + VI+ ++ + E +HR GRTGRAGR+G ++ FV P+ M + ER R Sbjct: 306 ARGIDVPRISHVINYDIPYDTEAYVHRIGRTGRAGREGSAILFVAPRESRMLKAIERATR 365 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKH--DPEK 415 + ++ PS E + R + Q L LD++Q ++ ++V+ L+ +H D + Sbjct: 366 QPIEAIAL---PSREEVAGRRVAQFKQ--LVLDTLQQEDLGFFMEVVNGLVDEHEIDAHE 420 Query: 416 IAAGF---------LRIHRAG-----LCAPEEI--TPVSLV--------------SGRDR 445 IAA L++ +G APE P V RD Sbjct: 421 IAAALAFLAQRDKPLQVEESGRGWDIATAPERDRRPPRETVRDGMREERGEREPRPNRDE 480 Query: 446 FRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505 RAF G R + ++VG Q A + ++ + GI + IG I + Sbjct: 481 ILSRRRAFADGALVR--------YRIAVGRNQGATPKEIVGAIANEGGIEGKYIGQIHLF 532 Query: 506 PDLTFVEVSA----DGVDLLRRT 524 D + VE+ A + + LL+RT Sbjct: 533 DDYSTVELPASLPGELLGLLKRT 555 >gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311] gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311] Length = 502 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ G+ T +Q + L+ KDV+ AQTG+GKT AFGL + + +N + Sbjct: 15 AIERSGFEEATPIQAETIPLALKGKDVIGQAQTGTGKTAAFGLPMLEKIDTKNQKLQ--- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L IAPTRELA+Q EL L + + GG + R+ R L+ IVVGTPG Sbjct: 72 ---GLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIRALKERPQIVVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + L + ++ +VLDEADEML++GF +DIE I+ P+ R+ L+FSAT+ AI Sbjct: 129 RLLDHLNRRTLKLEVIETLVLDEADEMLNMGFLEDIEKIISQVPENRQTLLFSATMPTAI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + K+ V I ++ ID V ++ + + +L + IVF T Sbjct: 189 KNIGIKFMKNPDHVKIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTPELTIVFGRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + L ++ + G+LSQQ+R + L+ ++G + +ATDVAARG+D+ + Sbjct: 249 KRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILVATDVAARGLDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|78355199|ref|YP_386648.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217604|gb|ABB36953.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 572 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 161/521 (30%), Positives = 260/521 (49%), Gaps = 38/521 (7%) Query: 3 IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +F ++P + + A+ + G+ + +Q + L KDV+ AQTG+GKT AFG+ + Sbjct: 50 LFADLPLSKEVLRAIQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKTAAFGIPIL- 108 Query: 61 TLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRER 118 +R P A A+ + PTRELA+QV E+ L K G+ V GG + R+ Sbjct: 109 ------ERIDPRDKATQAVVLCPTRELAIQVAEEVTTLARHKRGISVVPVYGGQPIERQV 162 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L+ GA ++VGTPGR+ DH+ ++I+ +K VVLDEADEMLD+GFRDDIEFIL + Sbjct: 163 RALRRGAQVIVGTPGRVMDHLDRGTMDINTVKMVVLDEADEMLDMGFRDDIEFILGKMEQ 222 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + + + FSAT+ AI +A+ Y K+ + + + I+ V + ++ + Sbjct: 223 EVQTVFFSATMPRAILDMAQRYLKEPEFLKVTQKLLTVPSIEQIYFEVRPFQKLESLCRV 282 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + K IVFCST+ V L + L G L+Q +R + R G + Sbjct: 283 LDVYNPKLTIVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDIL 342 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARGID+ ++E V++ ++ ++ E+ +HR GRTGRAGR G + + + Sbjct: 343 VATDVAARGIDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGREFYKLRD 402 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKH-DPEK 415 + R + PS+ + ++L + G E+ ++V+ ++ + + Sbjct: 403 IKRFTKAQIAQRQVPSLSEVENAKFTQMLNEVTNQIRTGGLERYIELVEGIIGEEFTSVE 462 Query: 416 IAAGFLR--IHR-AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472 AA LR +HR AG EE +F D G++ G + Sbjct: 463 AAAALLRMMMHRNAGDAVTEE----------QKFGDT--------GAQ---PGMVRLFFN 501 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 VG K + AR + + +G+ + IG+I + TFVEV Sbjct: 502 VGRKARVTARDFVGAIAGETGLPGRMIGSIDIYDRFTFVEV 542 >gi|254195234|ref|ZP_04901662.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei S13] gi|169651981|gb|EDS84674.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei S13] Length = 465 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L + RF Sbjct: 23 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTRRFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + RV + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375 Query: 374 SVEA 377 ++A Sbjct: 376 ELKA 379 >gi|83816639|ref|YP_444201.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855] gi|83758033|gb|ABC46146.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855] Length = 478 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 198/339 (58%), Gaps = 10/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ L VQ + L +D++V +QTGSGKT AF L L + + + Sbjct: 54 QAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQ-- 111 Query: 73 SAPLALAIAPTRELAVQVGRELEWL---YAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128 L + PTRELA Q+ E E + +T + AV I GGV + L+NGA +V Sbjct: 112 ----VLILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNGAQVV 167 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 +GTPGR+ DHI+ + S L+ +VLDEADEML +GF D++ I++ P R M+SAT Sbjct: 168 IGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSAT 227 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P + ++A+ + D ++++++ + +YR LV D+D + +L ++A+ Sbjct: 228 MPPKVRSVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESAL 287 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +T+ VS K L+ + + +SG+LSQ++R AL +R+G+ R+ +ATDVAARGI Sbjct: 288 IFANTKREVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGI 347 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 D+ DL V ++ + E ++HRSGRT RAG +G ++ + Sbjct: 348 DVSDLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVL 386 >gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii ATCC 33200] gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii ATCC 33200] Length = 484 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 195/354 (55%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ I +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L ++D A+ I PTRELA+Q EL L V V GG + R+ R Sbjct: 61 QNLDKQHDSIQ------AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ I+VGTPGRL DH++ ++IS +K +VLDEADEMLD+GF DIE IL + K Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSK 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 + L+FSAT+ I + + + D V I + + ID V +++ + + ++ Sbjct: 175 HQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 A++F T+ V T+ L + + G+LSQ +R + L+ R G+ + + Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +P++ +HR GRTGRAG+ GMSV FV P + Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEI 348 >gi|46581491|ref|YP_012299.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str. Hildenborough] gi|120601341|ref|YP_965741.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio vulgaris DP4] gi|46450913|gb|AAS97559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio vulgaris str. Hildenborough] gi|120561570|gb|ABM27314.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4] gi|311235140|gb|ADP87994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1] Length = 577 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/390 (34%), Positives = 207/390 (53%), Gaps = 14/390 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F ++ + EA G+ +L VQ L +D++V ++TGSGKT AF L L Sbjct: 41 FADLAPRLQEACIRAGWQSLMPVQAHALPYLFDGRDLMVQSRTGSGKTGAFLLPLL---- 96 Query: 64 AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +R PA A AL + PTRELA+QV E L+ TG+ VA GGV ++ L+ Sbjct: 97 ---ERLDPAEASTQALVLVPTRELALQVEHEARTLFEGTGLRVAAVYGGVGYGKQNDALR 153 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-R 181 GAH VVGTPGR+ DH+ + + + L+A+ DEAD ML +GF D++ I PK+R Sbjct: 154 EGAHFVVGTPGRVLDHLLRRTMQLDRLRALTFDEADRMLSIGFYPDMKEIQRYLPKRRIA 213 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT P + LA + ++ ++++ + + D+D A++ +L Sbjct: 214 TCLFSATYPPHVLNLAGEFLREPQMLSLSHSQVHVAQTQHMFCESKPMDKDRALIRLLEI 273 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +AI+FC+T+A+V T VL + LS +LSQ +R L+ +R+ R +AT Sbjct: 274 ENPSSAIIFCNTKANVHYITAVLQGFGYNADELSADLSQSKREQVLERLRNNEVRFLVAT 333 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGID+P L VI E + E+ +HR+GRTGRAG G + ++ + +R+ R Sbjct: 334 DVAARGIDIPALSHVILYEPPEDRESYIHRAGRTGRAGAVGTVISLVDIMQKLELQRIAR 393 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPL 391 + + P P E D R++ D L Sbjct: 394 HYRMDIAHRPTPQDE-----DVARVVGDRL 418 >gi|301166278|emb|CBW25853.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ] Length = 654 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 112/338 (33%), Positives = 198/338 (58%), Gaps = 3/338 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I +AL+ G+ + +Q+ + P L +KD+ A+TGSGKT +F + + LL E Sbjct: 14 PELI-KALNSHGFKEASEIQDLTIKPILEKKDIFALAETGSGKTGSFAIPIMEILLEEKA 72 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 +P+ + L+ PTRELA Q + E + A+ G+ + IGG + ++ +L+ G H+ Sbjct: 73 LDNPSQQIVILS--PTRELAQQTNKFFEQVGAELGIKSSCIIGGEKIEKQIEELKEGVHV 130 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + K +++++ AVV DEAD + D+GF+ DIEFIL+ PK R+++M SA Sbjct: 131 LVATPGRLNDLTKQKEIDLANCLAVVFDEADRLFDMGFKKDIEFILNGIPKTRQLIMVSA 190 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T + + A + + + + E+ +ID++ ++ +++ +V L+ H A Sbjct: 191 TTNMDVLNTAFKFGSQPLEIKLNEESILVDNIDHKIAMIDKNEKMPLLVKQLQTHEDAYA 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+T+ + L + F+ +SG + Q +R+ ++ R + + TDVAARG Sbjct: 251 IIFCNTQFQTHLVAEWLKKMNFKAKPISGRMPQNKRTRLMEEFRSKETTILVCTDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +D+ D+ LVI+ +L + + +HR GRTGRAG+ G ++ Sbjct: 311 LDIKDVNLVINFDLPNEAASYVHRIGRTGRAGKDGQAI 348 >gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein family protein [Pseudoalteromonas tunicata D2] gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein family protein [Pseudoalteromonas tunicata D2] Length = 413 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/343 (37%), Positives = 197/343 (57%), Gaps = 9/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + +AL+E GY T +Q A + L+ KDV+ AQTG+GKT AF L + L + +R Sbjct: 10 QQLVQALTECGYDTPTPIQTAAIGEILQGKDVMAGAQTGTGKTAAFALPILQRLAEQPER 69 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 L + PTRELA QV E + + A+ GGVS+ + + ++ G I+ Sbjct: 70 KGQLRT---LVLTPTRELAQQVFASFEKYGQHSELTAALAYGGVSIGEQIKAIKAGVDIM 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ +N+S+++ +V DEAD MLD+GF D+I IL PK+R+ L+FSAT Sbjct: 127 VATPGRLLDHLVKGTVNLSNVQYLVFDEADRMLDMGFIDEINNILRRLPKERQTLLFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-- 246 AI L+K V + + N+ S+++ + V +DR +++ L GAKN Sbjct: 187 FDDAIFKLSKKLLNQPVLIEVNQRNQAASEVE-QIVYAVDADRKRELISHL--IGAKNWQ 243 Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + K + + + A+ G+ SQ R AL ++G+ RV +ATDVAA Sbjct: 244 QVLVFTRTKQTADELAKEMCKDGLKTQAIHGDKSQGARDKALSEFKEGKTRVLVATDVAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ L+ VI+ EL E+ +HR GRTGRAG KG+++ ++ Sbjct: 304 RGIDIQQLQYVINYELPYIAEDYIHRIGRTGRAGEKGLAISLL 346 >gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides DSM 12442] gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides DSM 12442] Length = 528 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N+++ +R N Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQTTKRKIDRMN- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ D K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIESDNLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides Rock3-17] gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides Rock3-17] Length = 536 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N+++ +R N Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQTTKRKIDRMN- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ D K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIESDNLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586] gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586] Length = 643 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 20 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367 >gi|240172264|ref|ZP_04750923.1| cold-shock DEAD-box protein, DeaD [Mycobacterium kansasii ATCC 12478] Length = 570 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 174/538 (32%), Positives = 274/538 (50%), Gaps = 44/538 (8%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ A++ GY + T++Q A + + DV+ AQTG+GKT AF + + S + D Sbjct: 22 PSVL-RAIAGVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSKI----D 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 S A+ AL +APTRELA+QV A + + I GG S + L+ GA Sbjct: 77 VTSTATQ--ALILAPTRELALQVAEAFSRYGAYLPKLNVLPIYGGSSYAVQLAGLRRGAQ 134 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S + +VLDEADEML +GF +D+E IL +P+ +++ +FS Sbjct: 135 IIVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVERILSDTPEYKQVALFS 194 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ PAI + Y D + V ++ +I R + VA + +A+ +L + Sbjct: 195 ATMPPAIRKITTKYLHDPLEVTSKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEA 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR---VCIATDV 303 IVF T+ + + L F A++G++ QQ+R + +R+G + +ATDV Sbjct: 255 MIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQQQRERTITALREGGPNGIDILVATDV 314 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFRE 362 AARG+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ +R + + Sbjct: 315 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRPGAALLFVSPR--ERHLLKAIEK 372 Query: 363 ANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDP 413 A + E P+VE + +AQR+ + F DSI +K+V+ +HD Sbjct: 373 ATRQTMTEAELPTVEDV---NAQRVAK---FSDSITDALAKPGVALFRKLVEDYEREHDV 426 Query: 414 E--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468 IAA R G L APE P S + D A K R N S Sbjct: 427 PMADIAAALALQSRDGEAFLLAPE--PPPERRSETKKPASDQHAEK-----RRNGPALST 479 Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 + +SVG + K ++ + G++R G I + PD + VE+ A L R T+K Sbjct: 480 YRISVGKRHKIGPGAIVGAIANEGGLHRSEFGHISIGPDFSLVELPA---KLPRATLK 534 >gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545] gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545] Length = 803 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 209/369 (56%), Gaps = 17/369 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL +RG +L +Q A+L P L +D++ A+TG+GKT+ F L + +LL+ +P+ Sbjct: 158 ALRKRGIESLFPIQSAVLAPALEGRDIVGRARTGTGKTLGFSLPIIESLLS-----NPSD 212 Query: 74 A----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128 A P + +APTRELA QV E++ + VC+ GGV++ + R L+NG V Sbjct: 213 ARNRRPRCIVLAPTRELANQVEAEIQLTVPS---MRTVCVYGGVAITNQERALRNGVDFV 269 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL D I+ L + ++ VLDEAD+ML +GF +D+E I+ P++R+ +FSAT Sbjct: 270 VGTPGRLIDLIQRGSLQLQDIEYCVLDEADQMLAVGFEEDVERIMQEIPEERQTFLFSAT 329 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-AK 245 + + L + Y K+ V +++ +++Q ID + + R + +++ +G Sbjct: 330 MPSWVKQLTRKYLKEHVNIDLVGDSKQKVADTIDILSCACSHQSRTMILADLVTVYGKGA 389 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI F T+ T L + V L G+++Q +R L+ RD R V +ATDVAA Sbjct: 390 KAICFTQTKREADEVTAALGRRMATEV-LHGDIAQAQRERTLKRFRDNRFSVLVATDVAA 448 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ D++LV+H EL ++ E+ +HR GRTGRA ++G ++ + R + RE V Sbjct: 449 RGLDITDVDLVVHFELPNDTESFVHRCGRTGRANKRGTAIAMFTPRENYRLRTIVRETGV 508 Query: 366 SVVWEPAPS 374 + AP+ Sbjct: 509 TFKSINAPT 517 >gi|207858530|ref|YP_002245181.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206710333|emb|CAR34691.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 629 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 169/564 (29%), Positives = 268/564 (47%), Gaps = 48/564 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---------EKIAAGF 420 P+ E + +R ++ ++ + LLAK P E +AA Sbjct: 371 VELPNAELLGKRRLEKFAAK--VQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAAL 428 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGS------------- 466 L++ + P + P + + + FRD D R G N +G Sbjct: 429 LKMAQG--ERPLILPPDAPMRPKREFRDRDDR-----GPRERNDRGPRGDREERPRRERR 481 Query: 467 -----SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517 + + VG E R ++ + I+ + IG I++ + +E+ + Sbjct: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 Query: 518 VDLLRRTVKLDKGIQLKYLGGEKP 541 + RT L+K + ++ LG P Sbjct: 542 LQHFTRTRILNKPMNMQLLGDAVP 565 >gi|304383161|ref|ZP_07365635.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii DSM 16973] gi|304335738|gb|EFM01994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii DSM 16973] Length = 608 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 166/552 (30%), Positives = 264/552 (47%), Gaps = 36/552 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I A+ E G+ + VQE ++ P L DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEELGVSEEIRHAIEELGFEHPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAYGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVH 115 L + E + AL ++PTREL +Q+ +L G+ V GG S+ Sbjct: 60 PLIQKIDTE------SKTTQALVLSPTRELCLQIADDLTAFSKYINGLHVVPVYGGASIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L++G I+V TPGRL D + + ++ VVLDEADEML++GF D I I + Sbjct: 114 TQIRSLRHGVQIIVATPGRLIDLMHRGVAKLENVSNVVLDEADEMLNMGFSDSINEIFEG 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P R L+FSAT+S I +A+NY D + + S N ++++ +V D+ A+ Sbjct: 174 IPADRNTLLFSATMSREIEKIARNYLHDHKEIVVGSRNEGAENVNHIYYMVNAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ AI+FC T+ L + L G+LSQ +R +Q R Sbjct: 234 KRIVDYYPHIFAIIFCRTKRETQEVADKLIHDGYNAEPLHGDLSQPQRDLTMQKFRQHMT 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNM 352 + +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+KG S+ +I ++ Sbjct: 294 QFLVATDVAARGLDVDDLTHVINYGLPDDVESYTHRSGRTGRAGKKGTSIAIIHTRERSK 353 Query: 353 QRRAERL----FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM---VD 405 R E++ F E + P+ + I + +++ + L D ++ + +D Sbjct: 354 MRAIEKIIGKKFDEGTI-------PTAKEICSKQLYKVMDEILKTDVLEEEIAPFMTEID 406 Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465 D E I + + A PV + R R + G ++K Sbjct: 407 RHFEYIDKEDIIKKIVSMEFGKFLAYYADAPVIERPTTQKERLSERKERQRKGGNRSYKA 466 Query: 466 SSWFSLSVGSKQKAEARW---LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522 F+ + KA+ + +M + R RQ +G I + +++EV ++ D Sbjct: 467 EEGFTRLFINLGKADGFYPGEVMQFINRHVH-GRQEVGHIDLLSKYSYIEVPSEDAD--- 522 Query: 523 RTVKLDKGIQLK 534 R +K G+Q K Sbjct: 523 RVMKALNGVQYK 534 >gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 526 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 145/444 (32%), Positives = 238/444 (53%), Gaps = 30/444 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 15 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 75 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKFPQIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + +++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 129 TPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AI+F Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M ++R + L Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 368 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA Sbjct: 369 -----QAPTWDEAFAGQL---RVATEKIQEAVTEENL-SDYKTYANQLLEKYDATDIAAA 419 Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443 L++ L + TPV + R Sbjct: 420 MLKM----LAKEPDKTPVHITEER 439 >gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597] gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597] Length = 471 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/360 (34%), Positives = 202/360 (56%), Gaps = 14/360 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+++ GY + T +Q+ + P L +DVL AQTG+GKT +F L + + L Sbjct: 11 PKVL-QAIADAGYESPTPIQQGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLSKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L +APTRELA QV + + A+ IGGVS + + G + Sbjct: 70 R---ARMPRSLVLAPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + RV +A + I+ V+ S RD + +++ Sbjct: 187 TMAPEIERITNTFLSGPARVEVARQATASETIEQGVVMFKGSRRDREGSEKRQVLRDLID 246 Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G +NAI+FC+ + V K L ++ F + G+L Q +R+ L+ RDG R Sbjct: 247 REGEDCRNAIIFCNRKTDVDVTAKSLKKYGFDAAPIHGDLEQSQRTKTLEGFRDGSLRFL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQRRAE 357 +A+DVAARG+D+P++ V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++ + A+ Sbjct: 307 VASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAIMICVPRDEKNLAD 366 >gi|304311852|ref|YP_003811450.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1] gi|301797585|emb|CBL45806.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1] Length = 458 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/350 (36%), Positives = 200/350 (57%), Gaps = 9/350 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + E L GY +T +Q L P L DV+ ++TGSGKT AFG+ + ++L N Sbjct: 11 LPPHLVENLRGLGYSQMTPIQAQALPPILDGADVIAQSKTGSGKTAAFGIGVLTSL---N 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 RF A L + PTRELA QV +EL L + + + GG ++ + L++GA Sbjct: 68 PRFFGTQA---LVLCPTRELADQVAKELRRLARSLQNIKILTLCGGTAIGPQFASLEHGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ H+ L++ LK +VLDEAD MLD+GF D I I PK+R+ L+F Sbjct: 125 HIIVGTPGRVTKHLDKGSLDLQGLKTLVLDEADRMLDMGFYDQIAEIARFIPKRRQTLLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT +PAI L++N+Q + V + + S + S+I+ V R A+ +L+ + Sbjct: 185 SATYTPAIRELSRNFQSNPVEITVESVH-ADSEIEQYFYEVDHKQRRRALSALLKNFKPE 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +A++FC+T+ L F L G++ Q++R L + +ATDVAA Sbjct: 244 SAVLFCNTKQLCDEVADALNAQGFYAQTLHGDMEQRDRDLVLLKFSNRSCPYLVATDVAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 RG+D+ DL V++ +++ +P+ +HR GRTGRAG+KG+++ P +QR Sbjct: 304 RGLDIKDLAAVVNVDVAFDPDVHIHRIGRTGRAGQKGLALSLCSPAEVQR 353 >gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24] Length = 491 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L + +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQAPEKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R +++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|37676305|ref|NP_936701.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus YJ016] gi|37200846|dbj|BAC96671.1| DNA and RNA helicase [Vibrio vulnificus YJ016] Length = 459 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 203/365 (55%), Gaps = 9/365 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L GY +T +Q L L KDV+ +TGSGKT F L L S L R Sbjct: 17 TLDSLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSNLNVSRFRVQ--- 73 Query: 74 APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QV E+ L + V GG+ + + L++GAHI+VGTP Sbjct: 74 ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEHGAHILVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ ++++ L +VLDEAD ML++GF+D I+ I+D++P +R+ L+FSAT Sbjct: 131 GRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTLLFSATFPEQ 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVFC 251 I T+A ++ V + S Q S I+ R L + +RDNA+ +L H ++ +VFC Sbjct: 191 IETIASKVMQNPEMVKVES-THQKSTIEQRFYQLESTEERDNALEALLLTHRPESTVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V T L F V+ L G++ Q+ER AL M + + +ATDVAARG+D+ Sbjct: 250 NTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVD 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +L+ VI+ ELS +PE +HR GRTGRAG KG+++ + R ER+ + V Sbjct: 310 NLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIEEYMGIDVHPAK 369 Query: 372 APSVE 376 P E Sbjct: 370 LPQPE 374 >gi|332885949|gb|EGK06193.1| hypothetical protein HMPREF9456_00067 [Dysgonomonas mossii DSM 22836] Length = 608 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/386 (35%), Positives = 207/386 (53%), Gaps = 12/386 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57 MK FE + I +A+ E GY N VQE ++ L E DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETNDVIALAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115 + + + + P AL + PTREL +Q+ +L Y+K + V GG S+ Sbjct: 61 ILQKIDIKQN------VPQALILCPTRELCLQIAGDLSD-YSKYIDNLRVLPVYGGSSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + + L+ G I+V TPGRL D I + + +S++K VVLDE+DEML++GF + I+ IL Sbjct: 114 SQIKSLKRGVQIIVATPGRLIDLINRRTVELSNVKYVVLDESDEMLNMGFMESIDEILSK 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P +R ML+FSAT+ I + K Y ++ + I +N + + + LV D+ A+ Sbjct: 174 VPDERLMLLFSATMPKEIAKITKKYMQNPKEITIGRKNEGSNSVKHVYYLVHAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I Y+ I+FC TR L + + +L G+LSQ +R +Q R Sbjct: 234 KRIADYYPNIYGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIKNI 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ L VI+ L + E+ HRSGRTGRAG+ G S+ +I + + Sbjct: 294 QLLVATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSIAIIHVKEKGK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRER 381 + + N PS EAI E+ Sbjct: 354 VREIEKIINKKFEQGAIPSGEAICEK 379 >gi|330503492|ref|YP_004380361.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] gi|328917778|gb|AEB58609.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] Length = 560 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 196/338 (57%), Gaps = 11/338 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + +Q + L D++ AQTG+GKT AF L L S + PA Sbjct: 20 ALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLS-------KIDPAK 72 Query: 74 -APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L +APTRELA+QV E Y+K GV V GG + + + ++ GA I+V Sbjct: 73 REPQVLILAPTRELALQVATAFET-YSKQMPGVNVVAVYGGAPMGPQLKAIRQGAQIIVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+R +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++FSAT+ Sbjct: 132 TPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSVLFSATLP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +I +A+ + ++ + IA++ + S I+ +++ + NA++ +L I F Sbjct: 192 HSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLLEVEDFDALIAF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L F+ AL+G+++Q +R ++ ++DGR + +ATDVAARGID+ Sbjct: 252 VRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P + V + ++ +PE+ +HR GRTGRAGR G ++ ++ Sbjct: 312 PRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLV 349 >gi|254176272|ref|ZP_04882930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei ATCC 10399] gi|160697314|gb|EDP87284.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei ATCC 10399] Length = 476 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 34 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 89 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 90 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 147 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 148 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 207 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + RV + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 208 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 266 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 267 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 326 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 327 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 386 Query: 374 SVEA 377 ++A Sbjct: 387 ELKA 390 >gi|94676631|ref|YP_589051.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219781|gb|ABF13940.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 591 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 168/564 (29%), Positives = 272/564 (48%), Gaps = 46/564 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY + +Q + L +DVL AQTGSGKT AF L L + + + Sbjct: 20 ALKDLGYETPSPIQAECIPHLLAGRDVLGIAQTGSGKTAAFALPLLHNINLK------LN 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQV E +AK G+ V GG + R L+ G+ ++VGT Sbjct: 74 APQVLVLAPTRELAVQVS-EAYSDFAKYMKGINVVALYGGQRYDVQLRLLRQGSQVIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ L++SHL +VLDEADEML +GF +D+E IL P K + +FSAT+ Sbjct: 133 PGRLLDHLKRGTLDLSHLHGLVLDEADEMLRMGFIEDVENILAQIPAKHQTALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI + + + + V+I S DI V ++ A+ L AI+F Sbjct: 193 AIRRITRRFMTEPKEVHIESNIANRPDISQSYWTVHGRCKNKALARFLEVEDFDAAIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + ++ L ++ + AL+G+++Q R L +++G V IATDVAARG+D+ Sbjct: 253 RTKNATLEVSQSLEQNGYNSAALNGDMNQALREQTLSRLKNGSLDVLIATDVAARGLDVD 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + Q +R + R +++ Sbjct: 313 RISLVVNYDIPLDSESYIHRIGRTGRAGRAGRALLFVEQRERRLLRNIERLMKLNIPEVQ 372 Query: 372 APSVEAIRERDAQRI---LQDPL----------FLDSIQGDEKKMVDVLLAKHDPEKIAA 418 P+ E + R +++ +++ L L +Q EK +D+ E +AA Sbjct: 373 LPTAEKLNTRRLEKLAVKIKNHLKNRDIGMYREMLTRLQQTEKLDIDI-------ETLAA 425 Query: 419 GFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 L++ R + +PE + L S R+ + R + + + VG Sbjct: 426 VLLKMAHGQRPLILSPEPVIERRLHSNSRRYNNRERI---------DVSKMDLYRIEVGR 476 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGI 531 E R ++ + IN IG I++ + +E + + RT ++K I Sbjct: 477 NDGVEVRHIVGAIANEGDINSSYIGNIKLFASHSTIELPKGIPGXILSHFTRTRIMNKPI 536 Query: 532 QLKYLGGEKPDFRGYKSSGFKSKN 555 L+ L E R + G + N Sbjct: 537 NLQ-LFDEASSARCVERYGIRRSN 559 >gi|91794302|ref|YP_563953.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91716304|gb|ABE56230.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 419 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 201/368 (54%), Gaps = 2/368 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ V+ ++ + YV+ T VQ + L D+LV AQTG+GKT AF + L LL + Sbjct: 16 NLHPVLLASIKAQSYVDPTPVQRQAIPEILLGHDLLVGAQTGTGKTAAFAIPLVHKLLMQ 75 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ L + PTRELA+QV + L T + A+ GG S+ + R + G Sbjct: 76 SEEAHQGKVIKGLILTPTRELALQVQHNIHALLQGTELKHAIAYGGASIGEQVRSFKAGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+R K +++ H++ +V DEAD MLD+GF+D+I +L PK+R+ L+F Sbjct: 136 DILVATPGRLLDHLRHKAVSLKHVEYLVFDEADRMLDMGFKDEIVDLLKRLPKQRQTLLF 195 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ +I + +KN + + +A N + + I+ R V + + + ++L + Sbjct: 196 SATLNDSIFSFSKNLLNEPKVIEVAKANTKVAKIEERVYCVDEERKLSLLCHLLSKERWQ 255 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + + + +A G+LSQ R + L+ + +V +ATDVAA Sbjct: 256 QVLVFSRTKQGADNLACQMQKSGIEALAFHGDLSQSVRESVLKDFSQAKVQVLVATDVAA 315 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--FVIPQNMQRRAERLFREA 363 RG+D+ DL V++ EL E+ +HR GRTGRAG+ G++V F I + + + Sbjct: 316 RGLDIEDLNYVVNYELPHVSEDYIHRIGRTGRAGKDGIAVTLFAIEDTAKLMSLETLLDR 375 Query: 364 NVSVVWEP 371 + W P Sbjct: 376 RLPQQWYP 383 >gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] Length = 638 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 122/341 (35%), Positives = 198/341 (58%), Gaps = 8/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E GY +++Q A + L +DV+ AQTG+GKT AF L + S L Sbjct: 30 KAVREIGYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALPILSRLDVSQ------ 83 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S P AL ++PTRELA+QV E + GV V GG + + L+ G H+VVGT Sbjct: 84 SKPQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSALRRGVHVVVGT 143 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF +D+E IL +P+ +++ +FSAT+ Sbjct: 144 PGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPEDKQVALFSATMPA 203 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++K Y +DA + + S+ ++ R ++V+ + +A+ IL + IVF Sbjct: 204 QIRRISKKYLRDAEEITVKSQTTTSANTSQRYLVVSYPQKVDALTRILEVENFEGMIVFV 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T++ + L + A+SG+++Q +R + ++ G+ + +ATDVAARG+D+ Sbjct: 264 RTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILVATDVAARGLDVD 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P+ Sbjct: 324 RISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRE 364 >gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1] Length = 591 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 21/385 (5%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +GY L +Q P L KD+L A+TG GKT++F L + LL E R AP A Sbjct: 17 KGYTKLFEIQSRTFTPILEGKDILGKARTGEGKTLSFALPIIELLLKEG-RNGRGRAPRA 75 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVA-VCI-GGVSVHRERRDLQNGAHIVVGTPGRL 135 L +APTRELA QVG+E +A G +A C+ GG + ++ G +++GTPGRL Sbjct: 76 LCMAPTRELAHQVGKE----FADIGPSLASTCVYGGAPYMPQESAIRRGLDVIIGTPGRL 131 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI----LDSSPKKRRMLMFSATISP 191 DH+ L ++ +K ++LDEAD ML+ GF + I+ I + S K +M++FSAT+ Sbjct: 132 KDHLDKGTLKLTDIKYLILDEADRMLEQGFVEAIDEIQKMTIAQSGGKPQMILFSATMPD 191 Query: 192 AITTLAKNYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKN-A 247 I + KNY + V V+ +S NR +D+ A+ ++R I ++++ Y GA Sbjct: 192 FILSTVKNYMPNHVTVDTVGSSRNRTSKGVDHLAIKCPWTERRAVIADVVQMYSGAHGRT 251 Query: 248 IVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ + L L Q V L G++ Q++R +LQ RDG+ R +ATDVAAR Sbjct: 252 IIFTQTKKDANEL--ALETDLRQEVQVLHGDIPQKQREMSLQAFRDGKVRCLVATDVAAR 309 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+P+++LV+ E + E+ +HRSGRTGRAGR G + N + + R A +S Sbjct: 310 GLDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRTGTCICFYKPNQEDAMRYVERRAGIS 369 Query: 367 VVWEPAPSVEAI---RERDAQRILQ 388 AP E + RDA R L+ Sbjct: 370 FRRIGAPQPEDVIKASARDAFRSLE 394 >gi|39951881|ref|XP_363657.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15] gi|152032663|sp|A4RK80|PRP28_MAGO7 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 gi|145020572|gb|EDK04701.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15] Length = 674 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 139/384 (36%), Positives = 205/384 (53%), Gaps = 33/384 (8%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M+ +E N+P V+ + + + GY T VQ A + L+ +D++ ++TGSGKT AF L + Sbjct: 256 MRFWEESNLPHVLKDTIKQVGYTEPTPVQRAAIPIALQCRDLIGISKTGSGKTAAFVLPM 315 Query: 59 ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV-SVH 115 S + L + + P AL +APTRELA Q+ E+ + G V IG ++ Sbjct: 316 LSYIEPLPPLNEVTKTEGPYALILAPTRELATQIQAEVIKFATRMGFTVVCLIGNKRTIE 375 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + L+NGA I+V TPGRL D + L +S VVLDEAD M+D GF D I IL + Sbjct: 376 EDAFALRNGAEIIVATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIHKILAA 435 Query: 176 SP-------------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210 P + R+ +M+SAT+ P++ +AKNY K V I Sbjct: 436 LPPSNGKPDDRDAEDPNIMSKFLTPNLRYRQTVMYSATMPPSVERIAKNYLKHPAMVTIG 495 Query: 211 SENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA-KNAIVFCSTRASVSRFTKVLAEHL 268 + ++ +A+ V D R N + +L +G K IVF +T+++ K L Sbjct: 496 TIGEAVDTVEQQAMWVVSEDERRNKLRAMLNTYGTGKLVIVFVNTKSNCDAVAKDLKSSS 555 Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328 F V L G +Q +R ALQ RDGR V +ATDVAARG+D+PD+ LVI+ ++ E Sbjct: 556 FSAVTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVY 615 Query: 329 LHRSGRTGRAGRKGMSV-FVIPQN 351 HR GRTGRAG++GM++ F P++ Sbjct: 616 THRIGRTGRAGKEGMAITFCGPED 639 >gi|308502005|ref|XP_003113187.1| hypothetical protein CRE_25313 [Caenorhabditis remanei] gi|308265488|gb|EFP09441.1| hypothetical protein CRE_25313 [Caenorhabditis remanei] Length = 506 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 118/357 (33%), Positives = 204/357 (57%), Gaps = 19/357 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + +A G++ + +Q+A L L+ KDV+ A+TGSGKT AF + + +LL Sbjct: 61 VSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP 120 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F L + PTRELA Q+G++ E L + G++ AV +GGV + + L H Sbjct: 121 QAF------FCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 174 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+ KG N+ LK +++DEAD +L++ F +++ IL PK+RR +F Sbjct: 175 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRTYLF 234 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ ++ L + +D RV++++ + ++ + + ++ +V +L H Sbjct: 235 SATMTKKVSKLERASLRDPARVSVSTRYKTVDNLKQHYIFIPNKYKETYLVYLLNEHAGN 294 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ------------QERSNALQMMRDG 293 +AIVFC+T A+ + +L + Q V L G++SQ ++R +L + Sbjct: 295 SAIVFCATCATAMQIAVMLRQLGMQAVPLHGQMSQVRFERPLQVGSLEKRLGSLNKFKSK 354 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + + TDVAARG+D+P +++VI+ ++ S ++ +HR GRT RAGR G+++ V+ Q Sbjct: 355 ARDILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQ 411 >gi|237736924|ref|ZP_04567405.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817] gi|229420786|gb|EEO35833.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817] Length = 545 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 133/382 (34%), Positives = 208/382 (54%), Gaps = 16/382 (4%) Query: 13 EALSERGYVNLTSVQE----AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 +AL+++GY T +Q A+LN D KD++ AQTG+GKT AF L + + Sbjct: 18 KALAKKGYEQPTPIQALTIPALLNGD---KDIIGQAQTGTGKTAAFSLPIL-------EN 67 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F P+ A+ +APTRELA+QV E+ L + + GG S+ + R L+ G I+ Sbjct: 68 FEPSKVIQAIVLAPTRELALQVAEEMNSLAHGKKIRITPVYGGQSIEFQIRQLKKGTDII 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ D + K + + LK +LDEADEML++GF +DIE IL+++ + +RML FSAT Sbjct: 128 VGTPGRVIDLMERKLIKLQDLKYFILDEADEMLNMGFVEDIEKILEATNEDKRMLFFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I +AKN+ KD + + + D V D+ A+ I+ I Sbjct: 188 MPNEIMKIAKNHMKDYEVLAVKARELTTDLTDQIYFEVHEKDKFEALCRIIDLTRDFYGI 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ + L + + L G++SQ R L+ + + V +ATDVAARGI Sbjct: 248 VFCRTKNDANDLVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367 D+ DL VI+ + E+ +HR GRTGRAG++G ++ F+ PQ RR ++ R + Sbjct: 308 DVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQRIVKTEI 366 Query: 368 VWEPAPSVEAIRERDAQRILQD 389 E P ++ + + R++++ Sbjct: 367 RKERVPEIKDVIQAKKFRLMEE 388 >gi|124381735|ref|YP_001025050.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10229] gi|126447168|ref|YP_001079394.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10247] gi|254356161|ref|ZP_04972438.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280] gi|126240022|gb|ABO03134.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei NCTC 10247] gi|148025144|gb|EDK83313.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280] gi|261826475|gb|ABN00540.2| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei NCTC 10229] Length = 463 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 23 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + RV + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375 Query: 374 SVEA 377 ++A Sbjct: 376 ELKA 379 >gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032] gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032] Length = 513 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 134/397 (33%), Positives = 220/397 (55%), Gaps = 27/397 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ G+ T +Q + L+ KDV+ AQTG+GKT AFG+ L ++ PA Sbjct: 33 KAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLV-------EKIDPA 85 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S + A+ IAPTRELA+QV EL + V GG + R+ R L+ HI+VGT Sbjct: 86 SPNIQAIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKKNPHIIVGT 145 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI + + + +++ VVLDEADEML++GF +DIE IL + P + + L+FSAT+ Sbjct: 146 PGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTLLFSATMPA 205 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + V + ++ S+I + + + + + +L + +IVF Sbjct: 206 PIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLLDIQSPELSIVFG 265 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+L+Q +R AL+ ++G V +ATDVAARG+D+ Sbjct: 266 RTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAARGLDIS 325 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V + ++ +PE+ +HR GRTGRAGR GM++ F+ P R + + R Sbjct: 326 GVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITP-----REKDMLR--------- 371 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 ++E +R R +++P ++I+G ++ VD L Sbjct: 372 ---AIEQTTKRKMDR-MKEPTLDEAIEGQQQVTVDRL 404 >gi|42522912|ref|NP_968292.1| ATP-dependent RNA helicase DbpA [Bdellovibrio bacteriovorus HD100] gi|39574108|emb|CAE79285.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] Length = 505 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 202/336 (60%), Gaps = 13/336 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 + E G+ LT +Q+ + L KD++ A+TGSGKT AF L + + + + Sbjct: 62 VQELGFETLTPIQQESIPLLLAGKDIIGQAKTGSGKTAAFSLPILNKINLDQ-------- 113 Query: 75 PL--ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 PL AL + PTRELA QV E+ L + G+ V GG S + L+NG IVVGT Sbjct: 114 PLLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQSGREQADALENGVQIVVGT 173 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + +++S +K VVLDEAD+MLD+GF D+I+ ++ P R+ ++FSAT Sbjct: 174 PGRLADFVGRNRIDLSAVKTVVLDEADKMLDMGFADEIKTVMRDLPGSRQTVLFSATFPE 233 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 +I L++ YQ+ A +V I E+ + + I+ +D+ N ++ IL+ H + + I+FC Sbjct: 234 SIEHLSRKYQRHAQQVII--EDEEQNLIEQLVYDSEDNDKTNVLMRILQQHPSDSTIIFC 291 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ +V+ + L + L G++ Q+ER + M R+G R+ +ATDVAARG+D+ Sbjct: 292 NTKNAVAEIAERLNDLGAASGCLHGDMEQRERDRVMAMFRNGSHRILVATDVAARGLDID 351 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +LELVI+ +L +PE +HR GRTGRAG+ G++V + Sbjct: 352 NLELVINFDLPLSPEIYVHRIGRTGRAGKTGVAVTI 387 >gi|269795126|ref|YP_003314581.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542] gi|269097311|gb|ACZ21747.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542] Length = 614 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 211/374 (56%), Gaps = 13/374 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + A+ + G+ +++QE + L D+ AQTG+GKT AFGL + + + E Sbjct: 36 GLPAELLSAVLDLGFTVPSTIQEKAIPALLAGNDITGVAQTGTGKTAAFGLPMLAAVDPE 95 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 R AL +APTRELA+QV +E +AK G+ V GG + R L Sbjct: 96 LRRTQ------ALVLAPTRELAMQVAEAIET-FAKHLPGIEVVPVYGGSPYPPQARALSR 148 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA IVVGTPGR+ DH+ L + ++ +VLDEADEML +GF +D+E I ++P +R++ Sbjct: 149 GAQIVVGTPGRVIDHLERGTLKLGDIRFLVLDEADEMLRMGFAEDVEKIFGAAPTERQVA 208 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ P I +A+++ + V + ++ ++ + + + +V + ++ +L Sbjct: 209 LFSATMPPQIRRVAQHHMRQPVEIAVSRQSSTVTSVTQQYAVVPFRHKVGSLTRVLATSD 268 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A AIVFC TR + L E +SG+++Q++R ++ +R G V +ATDV Sbjct: 269 ADAAIVFCRTRGAAEEVGSALIERGISAATISGDVAQKDREKIVERLRAGALDVLVATDV 328 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR--RAERLF 360 AARG+D+ + LV++ ++ PE +HR GRTGRAGR G+++ FV P R + ER Sbjct: 329 AARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRTGVALSFVTPNERGRLKQIERTI 388 Query: 361 REANVSVVWEPAPS 374 R+ V + P+P+ Sbjct: 389 RQQLVEIEI-PSPA 401 >gi|167913398|ref|ZP_02500489.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 112] Length = 465 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 23 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + RV + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375 Query: 374 SVEA 377 ++A Sbjct: 376 ELKA 379 >gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3] gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3] Length = 579 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/348 (36%), Positives = 200/348 (57%), Gaps = 10/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + + +SE GY + +Q + L KDVL AQTG+GKT AF L L LA Sbjct: 17 NLPEALLKVVSEMGYETPSPIQAQCIPHLLNGKDVLGLAQTGTGKTAAFALPL----LAN 72 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 D AP L +APTRELA+QV + Y++ G V GG S + + L+ Sbjct: 73 ID--LSLKAPQVLVLAPTRELAIQVAEAFQT-YSRHLAGFHVMPIYGGQSYNIQFGQLRR 129 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGR+ DH++ K L++S+L +VLDEADEML +GF DD+E I+ P K + Sbjct: 130 GPQVVVGTPGRIMDHLKRKTLDLSNLTTLVLDEADEMLRMGFIDDVETIMKDMPAKHQTA 189 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + K Y D + V I ++ +I+ + +V ++ +A+ +L Sbjct: 190 LFSATMPDQIKRITKRYMNDPIEVKIKAKTSTVENIEQKCWIVRGVNKLDALTRMLETEE 249 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + + L ++ AL+G+++QQ R + ++ G + +ATDV Sbjct: 250 FDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQTRERTIARLKSGGLDILVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+ + LV++ ++ ++ E+ +HR GRTGRAGRKG ++ F P+ Sbjct: 310 AARGLDVERISLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPR 357 >gi|326796106|ref|YP_004313926.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1] gi|326546870|gb|ADZ92090.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea MMB-1] Length = 460 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/345 (37%), Positives = 196/345 (56%), Gaps = 11/345 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + + L + G+ T VQE L PD+ E KD+L AQTGSGKT+AF + L LL Sbjct: 12 LPSELTKLLGDMGFKGFTPVQEQCL-PDILEGKDLLAQAQTGSGKTLAFAIGL---LLRI 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 N R+ A L + PTRELA QV +E+ + + V+ +C GG+ + L++ Sbjct: 68 NPRYFSTQA---LIMCPTRELADQVAKEIRRVARFMNNIKVLTLC-GGMPFGPQIGSLEH 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGRL +H+R + L++ +L +VLDEAD MLD+GF D I ++ +P R+ L Sbjct: 124 GAHIVVGTPGRLLEHLRKRTLSLQYLNTLVLDEADRMLDMGFVDSIREVVLETPSTRQTL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I ++ +Q + ++ I DI + + +++ L Y G Sbjct: 184 LFSATYGDNIEEISNEFQNNPSQIQIEVNQDLKPDIKQFFARTEKAQKYETLLDSLAYFG 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVFC+T+A L E VA+ G+L Q++R L + A + +ATDV Sbjct: 244 PRQAIVFCNTKADTQAVADFLNEQSVSTVAIHGDLEQKQRDQVLVRFANKSACIMVATDV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ +++LVI+ + + + + HR GRTGRAG G ++ I Sbjct: 304 AARGIDVKEIDLVINFDTTRDIDVHTHRIGRTGRAGHSGQALSFI 348 >gi|114777669|ref|ZP_01452629.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans PV-1] gi|114551885|gb|EAU54419.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans PV-1] Length = 415 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/331 (37%), Positives = 185/331 (55%), Gaps = 8/331 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-- 76 G+ T +Q + + +DVL AQTG+GKT AF + + + RF S Sbjct: 20 GFKRTTDIQFKAIPSIMEGEDVLAIAQTGTGKTAAFAIPVIDKI----HRFKTNSQSYGI 75 Query: 77 -ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 + + PTRELA+Q+G+ E L T V V GGV R+ LQ+G +++ TPGR+ Sbjct: 76 KCIVMVPTRELALQIGKVFESLANHTRVKVFTLHGGVEQERQIAKLQDGIDVLIATPGRM 135 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D I + + + + +VLDEAD MLDLGF +DI +I KK + L FSATI+ I Sbjct: 136 FDLINQQAIRLEGVSTLVLDEADHMLDLGFIEDIRYIKKMLKKKHQTLFFSATINDEIKK 195 Query: 196 LAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 LA + K +A+R+ ++ E+R ++ + + V + D+ + L+ H IVF TR Sbjct: 196 LAYSQVKSEAIRIQVSPEDRIAKNVSHFVMFVEMDDKRFFLDRFLQDHPEGKVIVFVRTR 255 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 R + +A F V++ G+ Q ER+ A+Q R G RV IATDV+ARGID+PD++ Sbjct: 256 VRAERVVRAMARAGFDTVSIHGDKDQDERATAMQAFRKGDCRVLIATDVSARGIDVPDVD 315 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VI+ +L PEN +HR GRTGR + G ++ Sbjct: 316 FVINYDLPEKPENYVHRVGRTGRGMKLGDAI 346 >gi|76584014|gb|ABA53488.1| ATP-independent RNA helicase [Burkholderia pseudomallei 1710b] Length = 505 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 63 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 118 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 119 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 176 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 177 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 236 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + RV + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 237 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 295 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 296 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 355 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 356 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 415 Query: 374 SVEA 377 ++A Sbjct: 416 ELKA 419 >gi|308185825|ref|YP_003929956.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1] gi|308056335|gb|ADO08507.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1] Length = 460 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 209/375 (55%), Gaps = 10/375 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 ++P + L E GY ++T VQ A L L+ +DV A+TGSGKT AFG+ L + Sbjct: 7 LNSLPDSQLDNLREMGYTSMTPVQAATLPAILQGRDVRAQAKTGSGKTAAFGIGLLHHI- 65 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121 ++ RF AL + PTRELA QVG L L + + V+ +C GG + +R L Sbjct: 66 -DSTRFQTQ----ALILCPTRELADQVGNVLRQLARFTRNIKVLTLC-GGQPMSAQRDSL 119 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + HIVVGTPGR+ DHI + L + L +VLDEAD ML++GF +D+E I++++P R+ Sbjct: 120 VHPPHIVVGTPGRILDHINRENLKLDQLSTLVLDEADRMLEMGFLNDMETIIEATPASRQ 179 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSAT IT ++ +Q+DA+ V + + + ID + + +++ ++ +L Sbjct: 180 TLLFSATWPDGITAISTRFQRDALSV-VTEDVSELPSIDQQFFEASHNEKLGLLIALLSD 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + +VFC+T+ L + L G+L Q++R L +G RV +AT Sbjct: 239 RQPSSCVVFCNTKRECDDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+D+ L +V++ +L+ +PE LHR GRT RAG G++V ++ + RA L Sbjct: 299 DVAARGLDIKSLAMVVNYQLAWDPEVHLHRIGRTARAGEHGVAVSLVAADEMARAHALED 358 Query: 362 EANVSVVWEPAPSVE 376 + W A +++ Sbjct: 359 FLQQKLPWVSASTLK 373 >gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium TX1330] gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733] gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408] gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1] gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium TX1330] gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733] gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408] gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1] Length = 503 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 194/354 (54%), Gaps = 10/354 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K E P+++ +++ G+ T +Q + L KDV+ AQTG+GKT AFGL + Sbjct: 3 FKELELSPELL-KSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML- 60 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 ++ P L L IAPTRELA+Q EL L V V GG + R+ R Sbjct: 61 ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ HIVVGTPGR+ DHI L + ++ +VLDEADEML++GF +DIE I+ P + Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + K V I ++ ID V ++ + + + Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVF T+ V + L ++ + G+LSQQ+R + L+ + G + + Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|53721181|ref|YP_110166.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei K96243] gi|121596589|ref|YP_990560.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1] gi|126458103|ref|YP_001074245.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1106a] gi|162210105|ref|YP_336816.2| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1710b] gi|166999117|ref|ZP_02264963.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei PRL-20] gi|167722070|ref|ZP_02405306.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei DM98] gi|167741069|ref|ZP_02413843.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 14] gi|167818249|ref|ZP_02449929.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 91] gi|167826638|ref|ZP_02458109.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 9] gi|167848158|ref|ZP_02473666.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei B7210] gi|217422828|ref|ZP_03454330.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 576] gi|226198779|ref|ZP_03794343.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|242313771|ref|ZP_04812788.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1106b] gi|254182850|ref|ZP_04889443.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1655] gi|254189582|ref|ZP_04896092.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia pseudomallei Pasteur 52237] gi|254264638|ref|ZP_04955503.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1710a] gi|254299641|ref|ZP_04967090.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia pseudomallei 406e] gi|52211595|emb|CAH37590.1| ATP-independent RNA helicase [Burkholderia pseudomallei K96243] gi|121224387|gb|ABM47918.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1] gi|126231871|gb|ABN95284.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1106a] gi|157809522|gb|EDO86692.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia pseudomallei 406e] gi|157937260|gb|EDO92930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia pseudomallei Pasteur 52237] gi|184213384|gb|EDU10427.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1655] gi|217393736|gb|EEC33756.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 576] gi|225929219|gb|EEH25242.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|242137010|gb|EES23413.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1106b] gi|243064681|gb|EES46867.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain/DbpA RNA binding domain protein [Burkholderia mallei PRL-20] gi|254215640|gb|EET05025.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 1710a] Length = 465 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 23 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + RV + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375 Query: 374 SVEA 377 ++A Sbjct: 376 ELKA 379 >gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16] gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16] Length = 467 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/446 (32%), Positives = 234/446 (52%), Gaps = 38/446 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ G+ T +Q + L+ KDV+ AQTG+GKT AFG+ + + +N Sbjct: 13 VMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVDVKN---- 68 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL +APTRELA+QV EL + A V V GG + R+ R L+ H++VG Sbjct: 69 --GAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI L + H++ VVLDEADEML++GF +DIE IL P +R+ L+FSAT+ Sbjct: 127 TPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A+ + D V + ++ +I + V + + + +L + AIVF Sbjct: 187 DPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V + L + + G+LSQ +R + L+ ++G + +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359 + V + ++ +PE+ +HR GRTGRAG+ G+++ FV P+ + +R+ ER+ Sbjct: 307 SGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERM 366 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415 +P EA+ QRI + L L+ + + K+ + LL +HD Sbjct: 367 ----------KPPTLNEAL--EGQQRIAIEKL-LNVAEAENLSFYKRAAEELLEEHDSVT 413 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVS 441 I A L++ L + TPV L Sbjct: 414 IVAACLKM----LTREPDTTPVKLTE 435 >gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067] Length = 526 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 145/441 (32%), Positives = 236/441 (53%), Gaps = 24/441 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 15 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNSVQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 75 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKFPQIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + +++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 129 TPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AI+F Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN----- 364 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M R+ E Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYL--RIVEETTKKRMQ 366 Query: 365 --VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 + W+ A + + R A +Q+ + +++ D K + LL K+D IAA L+ Sbjct: 367 PLQAPTWDEAFAGQL---RVATEKIQEAVTEENL-SDYKTYANQLLEKYDATDIAAAMLK 422 Query: 423 IHRAGLCAPEEITPVSLVSGR 443 + L + TPV + R Sbjct: 423 M----LAKEPDKTPVHITEER 439 >gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella multipartita DSM 44233] gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM 44233] Length = 607 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 207/374 (55%), Gaps = 16/374 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + A+ + G+ T++Q A + L +D+ AQTG+GKT AFGL L + + Sbjct: 33 GLPGTLLRAVKDLGFATPTAIQAAAIPALLAGRDITGVAQTGTGKTAAFGLPLLAAI--- 89 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 P AL + PTRELAVQV + + A V V GG +R L+ G Sbjct: 90 ----DPTPGVQALVLCPTRELAVQVADAISSFATALPDVSVIAIYGGTGFLPQRAALRAG 145 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DH+ L++S L+ +VLDEADEML +GF +D++ IL +P R+ + Sbjct: 146 AQVVVGTPGRIIDHLERGTLDLSGLRFLVLDEADEMLRMGFAEDVDRILSDAPNSRQAAL 205 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAV--LVALSDRDNAIVNILRY 241 FSAT+ PAI ++A + + V + + +RQ S +D R + +V D+ +A+ L+ Sbjct: 206 FSATMPPAIRSIAAKHMTNPVDIAV---SRQSSTVDSVRQIYAVVPFRDKVDALTRFLQV 262 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 AIVF T+ + + L ++G++ Q+ER ++ +RDGR V +AT Sbjct: 263 TEGDAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRDGRLDVLVAT 322 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR-RAERL 359 DVAARG+D+ ++LV++ + PE +HR GRTGRAGR G ++ F P+ M R RA Sbjct: 323 DVAARGLDVDRIDLVVNFDAPGEPEAYVHRIGRTGRAGRTGTALTFFTPREMGRLRAIER 382 Query: 360 FREANVSVVWEPAP 373 + + P+P Sbjct: 383 ATRGTLEQIVPPSP 396 >gi|205354184|ref|YP_002227985.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273965|emb|CAR38970.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629305|gb|EGE35648.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 618 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 169/564 (29%), Positives = 268/564 (47%), Gaps = 48/564 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---------EKIAAGF 420 P+ E + +R ++ ++ + LLAK P E +AA Sbjct: 371 VELPNAELLGKRRLEKFAAK--VQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAAL 428 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGS------------- 466 L++ + P + P + + + FRD D R G N +G Sbjct: 429 LKMAQG--ERPLILPPDAPMRPKREFRDRDDR-----GPRERNDRGPRGDREERPRRERR 481 Query: 467 -----SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517 + + VG E R ++ + I+ + IG I++ + +E+ + Sbjct: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541 Query: 518 VDLLRRTVKLDKGIQLKYLGGEKP 541 + RT L+K + ++ LG P Sbjct: 542 LQHFTRTRILNKPMNMQLLGDAVP 565 >gi|95928576|ref|ZP_01311323.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] gi|95135366|gb|EAT17018.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] Length = 587 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/344 (37%), Positives = 199/344 (57%), Gaps = 14/344 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +AL++ GY + +QE + P L E ++L +AQTG+GKT AFGL L + P Sbjct: 17 QALTDLGYQQPSPIQEQSI-PILNEGHNLLGTAQTGTGKTAAFGLPLLG-------KIDP 68 Query: 72 ASA-PLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + P L +APTRELA+QV L+ +AK V V GG ++++ + L +G +V Sbjct: 69 SKKYPQMLVLAPTRELAIQVSEALQS-FAKYLPKVKVLAVYGGQPMYQQLKALHDGVQVV 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+ K L + + AVVLDEADEML +GF +D+E IL ++P + + +FSAT Sbjct: 128 VGTPGRIMDHMERKSLRLEQISAVVLDEADEMLRMGFIEDVETILGATPPRCQCALFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + PAI +A+ Y DA V IAS I+ R +++ + + + + ++ I Sbjct: 188 MPPAIRRVAERYLGDAQEVQIASRTSTVDQIEQRYLMLRANQKFDVLTRLIEAQEIDGTI 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ + + + L + L+G+LSQQ R + +++G + IATDVAARG+ Sbjct: 248 VFVRTKTATTELAERLEARGYNAAPLNGDLSQQVRERTIGRLKNGSLDIVIATDVAARGL 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 D+ + V + ++ + E +HR GRTGRAGR G ++ FV PQ Sbjct: 308 DVERISHVFNYDIPFDTEAYIHRIGRTGRAGRTGTAILFVTPQE 351 >gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33300] gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC 33300] Length = 435 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 121/335 (36%), Positives = 186/335 (55%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL GY N T +QE + + KD+L AQTG+GKT AF + + L ++ + Sbjct: 29 ILKALEASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPILQMLTYSKEKTA 88 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA+Q+ + + + V GGV +R L+ G I++ Sbjct: 89 QKRI-RTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDALRKGIDILIA 147 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D +++ L+ VLDEAD MLD+GF D++ ++ PKKR+ L+FSAT+ Sbjct: 148 TPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKRQTLLFSATMP 207 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + ++ +V + E+ I V+ SD+ + + ++L+ ++ +VF Sbjct: 208 AEIQKLASHILEEPSKVEVTPESTTAEKIQQSVYFVSKSDKRHLLTHLLKSENIEHTLVF 267 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ R K LA+ Q A+ G SQ R NAL +D + RV +ATD+AARGID+ Sbjct: 268 SRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALSNFKDRKLRVLVATDIAARGIDI 327 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DL VI+ +L + PE+ +HR GRTGRAG+ G ++ Sbjct: 328 DDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAI 362 >gi|332534400|ref|ZP_08410240.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis ANT/505] gi|332036134|gb|EGI72609.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis ANT/505] Length = 462 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 126/342 (36%), Positives = 197/342 (57%), Gaps = 7/342 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + + LS GY ++T VQ L P L KD++ A+TGSGKT AF L + + L + Sbjct: 11 LPAGLVDNLSTLGYAHMTPVQAQSLPPVLAGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 R +L + PTRELA QV E+ L + + GGVS+ + L++GA Sbjct: 71 FRIQ------SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DHIR L + ++ +VLDEAD+MLD+GF+D ++ I++ P+ R+ L+F Sbjct: 125 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIERIPQNRQTLLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT AI +AK K+ V + E + + Y + R + +L + Sbjct: 185 SATFPRAIEAIAKRVLKNPEMVKVEEEQAKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VFC+T+ + LA+ F VAL G+L Q++R L + A + +ATDVAA Sbjct: 245 SCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFSNKSASILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 RG+D+ D+++VI+ L+ + + +HR GRTGRAG+KG++ + Sbjct: 305 RGLDIDDMDMVINYHLAHDTQTHVHRVGRTGRAGKKGIACSI 346 >gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201] gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201] Length = 555 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 190/346 (54%), Gaps = 6/346 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67 Q I +AL+ G + +Q L L +D++ A+TG+GKT+ FG+ + +D Sbjct: 41 QDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQAKTGTGKTLGFGIPALQRAVGRDDA 100 Query: 68 ---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + + AP AL + PTRELAVQVG +L VA GG + +L+ G Sbjct: 101 GWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVATIYGGRPYESQIAELEKG 160 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +VVGTPGRL D R L++SH++ VVLDEADEMLDLGF D+E +L + P R+ ++ Sbjct: 161 VEVVVGTPGRLIDLNRQHFLDLSHVRMVVLDEADEMLDLGFLPDVEKLLATVPAVRQTML 220 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYH 242 FSAT+ + +A+ Y + + A+ + + D R V+ D+D + IL+ Sbjct: 221 FSATMPGPVVAMARRYMTRPMHIRAAAPDEGTTKKDIRQVIYRAHHLDKDEVVARILQAE 280 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G +I+F T+ + ++ L F L G+L Q R AL+ R+ + V +ATD Sbjct: 281 GRGRSIIFTRTKRAAAKLADELIHRGFAAAPLHGDLGQGAREQALRAFRNSKVDVLVATD 340 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ D+ VI+ + + + LHR+GRTGRAG KG ++ + Sbjct: 341 VAARGIDVEDVTHVINFQCPEDEKTYLHRTGRTGRAGNKGTAITFV 386 >gi|52082502|ref|YP_081293.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580] gi|52787898|ref|YP_093727.1| DeaD [Bacillus licheniformis ATCC 14580] gi|52005713|gb|AAU25655.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580] gi|52350400|gb|AAU43034.1| DeaD [Bacillus licheniformis ATCC 14580] Length = 481 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 121/335 (36%), Positives = 192/335 (57%), Gaps = 6/335 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL GY T+VQ ++ L+++DV+V ++TGSGKT AFG+ L E ++ Sbjct: 15 ITKALDHLGYKEPTAVQSEVIPAVLKKRDVVVKSRTGSGKTAAFGIPLCELTEWEENK-- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA QV +L + + A G S R++ +L+ HIVVG Sbjct: 73 ----PQALVLTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQKCHIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 PGR+ DHI L + LK +V+DEADEML++GF D + I+ P++R ++FSAT Sbjct: 129 PPGRVLDHIEKGTLPLEKLKYLVIDEADEMLNMGFIDQVGAIIRHLPEERLTMLFSATFP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L+ Y KD +++ I + +DI+++ ++V +D + +V++ + IVF Sbjct: 189 EDVEHLSLQYMKDPLKIEIKAGGTTTADIEHQLIIVNENDPFSLLVDLFIVENPDSCIVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V+ L+ + + G + Q++R + R G R IATDVAARGID+ Sbjct: 249 CRTQEQVNELQWRLSVLGYPCEKIHGGMPQEDRFAVMNRFRRGAFRYLIATDVAARGIDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++ VI+ EL + E+ +HR+GRTGRAG +G ++ Sbjct: 309 ENITHVINYELPLDQESYVHRTGRTGRAGSRGKAI 343 >gi|325265712|ref|ZP_08132401.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394] gi|324982843|gb|EGC18466.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394] Length = 449 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/343 (37%), Positives = 195/343 (56%), Gaps = 7/343 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I AL GY + T +Q + L +KD++ SAQTGSGKT AF L ++ Sbjct: 9 NLDKNILSALQAAGYDSPTPIQAQSIPAALADKDIMASAQTGSGKTAAFLLPSLQKIVKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P L + PTRELA QV + + +YAK V +GG S ++ + + Sbjct: 69 SEK--PGKGPRVLVLTPTRELAAQVEKNAQ-IYAKNMKWVRSVTLVGGSSFGQQIKAMSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 I+V TPGRL DH+R ++ L+ ++LDEAD MLD+GF DDIE I+ ++P+ R+ L Sbjct: 126 PIDIIVATPGRLMDHMRSGRVDFDRLEVLILDEADRMLDMGFIDDIETIVAATPEDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242 +FSAT A+ LA+ K+ + I E++Q ID + + + N +++ ILR Sbjct: 186 LFSATWDGAVGKLARKLTKNPEVIEIEREDKQ-GKIDEQLLYCDDKNHKNRLLDHILRDA 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATD Sbjct: 245 NIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ Sbjct: 305 VAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGLAI 347 >gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595] gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 620 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 169/544 (31%), Positives = 270/544 (49%), Gaps = 32/544 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ I A+++ G+ + T++QE + L +DVL AQTG+GKT AF L + + + Sbjct: 11 NLPETILSAVTDLGFTSPTAIQEQAIPLLLEGRDVLGVAQTGTGKTAAFALPMLAHVDPN 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 N AL +APTRELA+Q + A+TG + V + GG + + L++G Sbjct: 71 NRHVQ------ALVLAPTRELALQGAEAINTFAARTGGLDVVAVYGGSAYGPQLGALRDG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D I L++S ++ VLDEADEML +GF +D+E I P++R + Sbjct: 125 AQVVVGTPGRVMDMIDRGALDLSTIRYFVLDEADEMLRMGFAEDVEKIATGLPEERISAL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A+ + + V ++S + I +V + A+ +L A Sbjct: 185 FSATMPKQIRMVAETHLNNPAEVQVSSPSSTVDTITQTYAVVPTRHKIGALARVLATTEA 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A+VF TRA+ L+ Q ALSG+++Q++R + +R G V +ATDVA Sbjct: 245 DAALVFVRTRATAEDLAIELSTRGVQAAALSGDVAQKDREKLVDRLRQGSIDVLVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFR 361 ARG+D+ + LV++ ++ E +HR GRTGRAGR+G ++ FV P+ Q RR E++ R Sbjct: 305 ARGLDVERIGLVVNFDIPREVETYVHRIGRTGRAGREGTALSFVTPKEKQRLRRIEKVTR 364 Query: 362 EANVSVVWEPAPS-----------VEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVL-- 407 ++ V P P+ EA+ R+ + D L + I E D + Sbjct: 365 -TQMTQVELPTPAEVSGLRARKLLAEAVERHAVGRLHVYDDLIAEFIAAQEDAQNDGMEL 423 Query: 408 --LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF-K 464 LA +A G PE++T V + DR R GG R F + Sbjct: 424 LSLADLVSALLALGVRDPGPQATDEPEKLT-VGFTADDDRREKRGRREDRGGQRRGGFDE 482 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD--LLR 522 + + + VG + ++ + G+ +G I + P + + V+ D +D LR Sbjct: 483 PGTTYRVEVGRRDGVAPGAIVGAMTNEGGLRGSQLGKIDIFPSFSLIHVN-DELDQATLR 541 Query: 523 RTVK 526 R K Sbjct: 542 RIAK 545 >gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp. SIP3-4] gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp. MP688] gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4] gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688] Length = 459 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 195/347 (56%), Gaps = 4/347 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-N 66 P+++ +AL E GY T +Q + L+ D++ AQTG+GKT AF L L LL + + Sbjct: 15 PEIL-KALEEFGYTVPTPIQAQAIPVVLQGHDLMAGAQTGTGKTAAFSLPLLQKLLPQAS 73 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 SPA P+ AL + PTRELA+QV ++ T + V GGV + + L G Sbjct: 74 SSASPARHPVRALILTPTRELAIQVEESVKVYAKHTALRSLVVFGGVDIKTQTPSLMKGV 133 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+ + + + ++ ++LDEAD MLD+GF D++ IL PKKR+ LMF Sbjct: 134 EILVATPGRLLDHVEQRTVQLGQVQMLILDEADRMLDMGFMPDLKRILALLPKKRQNLMF 193 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I L++ + + + +A N + + + +D+ + +L ++ Sbjct: 194 SATFSNDIKKLSEEFLTNPKLIEVARSNAASDKVTQKVYQLDKDSKDSFLAKLLLESNSE 253 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF T+ + SR + L A+ G+ SQQER AL+ + G+ +ATDVAA Sbjct: 254 QTIVFTKTKLTASRLARQLVREGIAADAIHGDKSQQERMQALEAFKQGKVTTLVATDVAA 313 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 RG+D+ L +VI+ EL S PE+ +HR GRTGRAG G ++ V P+ Sbjct: 314 RGLDIDQLPMVINFELPSAPEDYVHRIGRTGRAGASGTAISLVCPEE 360 >gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M] gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2] gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2] gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M] Length = 464 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/358 (37%), Positives = 196/358 (54%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + GYV++T +Q A L L D++ A+TGSGKT AF LAL S L A RF Sbjct: 22 LEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDAR--RFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E S I R V ++R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTETERLHAVGMLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA + G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIEQAQKRDVEWRP 372 >gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46] gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46] Length = 702 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 158/531 (29%), Positives = 267/531 (50%), Gaps = 30/531 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I A+ + G+ + +Q A + + +DV+ AQTG+GKT AF L + LA Sbjct: 68 LPDDIVNAVRKVGFETPSPIQAATIPTLMSGRDVVGLAQTGTGKTAAFALPI----LARI 123 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 DR AP AL +APTRELA+QV + G + + I GG S + L+ GA Sbjct: 124 DR--SVRAPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQSYGVQLSGLRRGA 181 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH+ L+IS L+ +VLDEADEML +GF++D+E IL +P +++ +F Sbjct: 182 QIIVGTPGRVIDHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVERILADTPDDKQVALF 241 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I L+K Y + + + S+ R +I R ++V+ ++ +A+ IL + Sbjct: 242 SATMPASIRRLSKQYLTEPEEITVKSQTRTADNIRQRFLMVSHRNKLDALTRILEVEEFE 301 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + L F A++G++ Q R + ++DGR + +ATDVAA Sbjct: 302 AMIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDILVATDVAA 361 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREAN 364 RG+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ + R R A Sbjct: 362 RGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVTPR--EGRLLRSIERAT 419 Query: 365 VSVVWE-PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI----- 416 S + E P+V+ + + Q+ D DS +++++ +HD + Sbjct: 420 KSQLHEMKLPTVDEVNDSRKQKFADDLTEALADSQVPVFRELIEEYAEEHDTPLVDIAAA 479 Query: 417 ------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF-----KG 465 + FL + SR + G G R + +G Sbjct: 480 IAAQAQSGDFLMKEPPRGRRHDRDRDRFDRDRNRGRDGRSRGER-GQGKRADLVEFDREG 538 Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ + +SVG +Q ++ + G++ + G I ++ D T VE+ A+ Sbjct: 539 TATYRISVGRRQHVRPGAIVGAIANEGGLSSKDFGHIDIRGDHTLVELPAN 589 >gi|108760847|ref|YP_634735.1| ATP-dependent RNA helicase DbpA [Myxococcus xanthus DK 1622] gi|108464727|gb|ABF89912.1| ATP-independent RNA helicase DbpA [Myxococcus xanthus DK 1622] Length = 461 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/337 (38%), Positives = 189/337 (56%), Gaps = 8/337 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L E + T +Q + L+ +D++ AQTGSGKT AF L L + ++ + Sbjct: 14 QVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLLQKVQLQHRKVQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTREL QV E+ L + G+ V V GG + + L+ GAH+ VGT Sbjct: 72 ----ALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEALEKGAHLAVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D + + L L VVLDEAD MLD+GFR+D+E IL + P +R+ ++FSAT P Sbjct: 128 PGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQTVLFSATFPP 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L++++Q+ VRV + + DI D+ ++ ILR++ +AIVFC Sbjct: 188 DIEALSRDFQRQPVRVTVEAAT-AGPDIQQVRYDCEPGDKQALLLRILRHYQPASAIVFC 246 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + +A+V K L+ V L G+L Q ER + R+ RV IATDVA RGID+ Sbjct: 247 NLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVLIATDVAGRGIDVE 306 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L+ VI+ +L E +HR GRTGRAGR G++V ++ Sbjct: 307 ALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIV 343 >gi|149377730|ref|ZP_01895465.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893] gi|149358015|gb|EDM46502.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893] Length = 503 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 203/374 (54%), Gaps = 8/374 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ EA++ GY + +Q + L K +L AQTG+GKT AF L L S + A Sbjct: 13 PAVL-EAVAAVGYEKPSPIQAQTIPALLAGKHLLGVAQTGTGKTAAFALPLLSRIDAS-- 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126 AP L +APTRELA+QV +K V GG + + L+ GA Sbjct: 70 ----VMAPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFFPQIKGLRRGAQ 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++VGTPGR+ DH+R L + LKA+VLDEADEML +GF DD+E IL +P + +FS Sbjct: 126 VIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPDNCQRALFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I +A+ Y +DA V I SE R I + V + +A+ IL Sbjct: 186 ATMPPQIKKVAQTYLRDATEVKIESETRTVERISQFVLPVYAERKLDALTRILEVEPVDG 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+A + + L+ V L+G+L+Q++R ++ ++ G+ + +ATDVAAR Sbjct: 246 TIIFVRTKAETTLLAEKLSARGHAVAPLNGDLNQRQREQTVEDLKRGKKDIIVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+P + VI+ ++ + E +HR GRTGRAGR+G ++ ++ + L R N Sbjct: 306 GLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTPRERSWLRTLERATNSP 365 Query: 367 VVWEPAPSVEAIRE 380 + PS A+++ Sbjct: 366 MESYELPSPNALKK 379 >gi|107027331|ref|YP_624842.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054] gi|105896705|gb|ABF79869.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054] Length = 465 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 197/358 (55%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV++T +Q A L L +D++ A+TGSGKT AF LAL + L A + Sbjct: 22 LAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDARSFDVQ---- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ + +A E S I R V +R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEIKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA + G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIEQAQKREVEWHP 372 >gi|145588844|ref|YP_001155441.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047250|gb|ABP33877.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 500 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/339 (37%), Positives = 195/339 (57%), Gaps = 6/339 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-- 72 ++E G+ TSVQ ++ L D+LVS+QTGSGKT AF L L + L+ +N SP Sbjct: 34 VAELGFTQATSVQAQVIPAALAGGDLLVSSQTGSGKTAAFLLPLINQLIEDNPNNSPVPG 93 Query: 73 -SAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P L + PTRELA QV + + + G+ +A +GG+ ++ + L+ GA +VV Sbjct: 94 RAQPKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMPYGKQIQALK-GALLVVA 152 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + + +K +V+DEAD MLD+GF DD+E I + + LMFSAT + Sbjct: 153 TPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAIDKRCAGRNQTLMFSATFA 212 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIV 249 P I +LA DA R+ +A +H++I+ + ++S + + +IL A+V Sbjct: 213 PKIMSLANELTTDAKRIELAHAGEKHANIEQKLHWADSMSHKHKLLEHILADATLDQAVV 272 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F ST+ + L + ++ AL G + Q R L+ +R G ++ +ATDVAARGID Sbjct: 273 FASTQVESEKIADTLRANGYEASALHGAMPQAVRMRRLESLRKGHTKILVATDVAARGID 332 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P + VI+ L PE+ HR GRTGRAGR G+++ ++ Sbjct: 333 VPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLV 371 >gi|238749573|ref|ZP_04611078.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380] gi|238712228|gb|EEQ04441.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380] Length = 504 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/394 (35%), Positives = 212/394 (53%), Gaps = 18/394 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ + D+ + Sbjct: 63 LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGVL-------DKIAVGEF 115 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 116 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 174 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 175 PGRIQEHLRKKTLILDDLKILVLDEADRMLDMGFADAIDDVISYTPPQRQTLLFSATYPQ 234 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ V V + + + I+ R ++++L ++ ++ +VFC Sbjct: 235 GIEQISARVQRQPVNVEV-DDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPESCVVFC 293 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 294 NTKKDCQNVYEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIK 353 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DL LV++ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 354 DLALVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQMKLKWT 412 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 PA V R A +L+ + I G K + Sbjct: 413 PADQV----SRSANTMLEPDMVTLCIDGGRKAKI 442 >gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex HEL-45] gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex HEL-45] Length = 529 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 133/388 (34%), Positives = 206/388 (53%), Gaps = 19/388 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +A+ E GY + T +Q + P L +DVL AQTG+GKT +F L + S L Sbjct: 8 NLNAKVLKAVVEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLSLLARG 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R A P +L + PTRELA QV + + A+ IGGVS + + + G Sbjct: 68 RAR---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH L +S +K +V+DEAD MLD+GF DIE I +P R+ L F Sbjct: 125 DVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-------I 238 SAT++P I + + + R+ +A + +I V+ S +D + Sbjct: 185 SATMAPEIERITNTFLSNPERIEVARQATTSENITQGVVMFKASRKDREATEKRKLLRML 244 Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 + G K NAI+FC+ + V K L +H + + G+L Q +R+ L R+G R Sbjct: 245 IDAEGEKCTNAIIFCNRKMDVDTVAKSLKKHGYDAAPIHGDLDQSQRTKTLDGFRNGELR 304 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQRR 355 IA+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G ++ + +P R Sbjct: 305 FLIASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVP-----R 359 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA 383 E+ F + +V + P +E + + DA Sbjct: 360 DEKNFEDVE-RLVQKEIPRLENLLQTDA 386 >gi|118443840|ref|YP_877556.1| ATP-dependent RNA helicase [Clostridium novyi NT] gi|118134296|gb|ABK61340.1| ATP-dependent RNA helicase [Clostridium novyi NT] Length = 476 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 133/406 (32%), Positives = 210/406 (51%), Gaps = 12/406 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY N T VQE + L+ KD++V +QTGSGKT +FG+ L + EN + P AL Sbjct: 20 GYKNPTEVQEKTIPLVLQGKDIIVKSQTGSGKTASFGIPLCEKVKLENKK------PQAL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELAVQ+ ++ + V G + ++ L+ HIVVGTPGR DH Sbjct: 74 ILTPTRELAVQIKEDISNIGRFKKVKCTAVYGKEPISIQKNQLKQRVHIVVGTPGRTFDH 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ L++S +K +++DEAD+ML++GF + +E I+ R ++FSAT+ I L K Sbjct: 134 IQKGNLDLSDIKYLIIDEADKMLNMGFINQVEDIIKEITNDRITMLFSATLEERIEKLCK 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 Y ++ I+ +N I+ V S R N + ++ +AI+FC+T+ V Sbjct: 194 RYMNHPEKIEISKKNVTTDIIEQEYYKVNHSKRFNTLTKVIYAEVPDSAIIFCNTKVEVG 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + F AL G + Q++R + + G+ + +ATDVAARGID+ ++ VI+ Sbjct: 254 NVANKMKNQGFNAKALHGGMDQKDRLYTINDFKRGKFQFLVATDVAARGIDVEEITHVIN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378 E+ E+ +HR GRTGRAG KG S+ + +R + SV + P E I Sbjct: 314 YEVPVEKESYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEIEEYIGYSVPEKEMPQEEEI 373 Query: 379 RERDA---QRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIAAG 419 + ++ Q P F ++G E KK+ + + +K+ AG Sbjct: 374 EKGKKLFEEKARQRPKF-KKVKGHEIDKKITKIHINAGKKKKVRAG 418 >gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str. Alaska E43] gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str. Alaska E43] gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 526 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 158/510 (30%), Positives = 249/510 (48%), Gaps = 34/510 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + +QE + L D++ AQTG+GKT A+G + S R + Sbjct: 17 KAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILS-------RLNDT 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131 + AL +APTRELAVQV EL+ L V GG S+ R+ R L ++ IVVGT Sbjct: 70 NGIKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRKDNIDIVVGT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ + +VLDEADEML++GF DDIE I+ ++P +R+ L+FSAT+ Sbjct: 130 PGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIDDIETIISNTPAERQTLLFSATMPA 189 Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAKNY K DA V I + S I+ ++ R A+ +L +AI+F Sbjct: 190 PIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNPSSAIIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V + L + V + G++SQ R L+ ++G + IATDVAARGID+ Sbjct: 250 CRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVAARGIDV 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + VI+ +L + E+ +HR GRTGRA R G + ++ +++ R ++ + Sbjct: 310 DGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQRVTKSTITEK 369 Query: 371 PAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLRIHRA 426 P+ I R I+ + +DS GD V L +DP I A ++I Sbjct: 370 SVPTANEIHSRKFTNIMNEIKETIDS--GDFSTFVPSAIELNEAYDPISIIASLMKIK-- 425 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 F ++ S+++ + SVG K + L+ Sbjct: 426 -------------FENESSFEYNTDTLDAPSASKNDVR----LFFSVGKKDGLTPKILIN 468 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + + + +IG I + + +FV + D Sbjct: 469 YIKDQTRVRASAIGKIDLMDNFSFVTIDED 498 >gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101] gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101] Length = 533 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 196/354 (55%), Gaps = 14/354 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + P L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVL-KAIEEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITMLARGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFGEQDKLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L +S +K +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-------ILR 240 T++P I + + + VR+ +A + +I+ ++ S +D ++ Sbjct: 187 TMAPEIERITNTFLSNPVRIEVARQATTGENIEQGVLMFKASRKDREATEKRKVLRALID 246 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAI+FC+ + V K L ++ + + G+L Q +R+ L+ R+G R Sbjct: 247 AEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDLRFL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351 +A+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++ Sbjct: 307 VASDVAARGLDVPSVSHVYNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRD 360 >gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36] gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36] Length = 488 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/316 (39%), Positives = 187/316 (59%), Gaps = 7/316 (2%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 KDV+ AQTG+GKT AFG + +N PA AL IAPTRELAVQ EL Sbjct: 4 KDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--ALIIAPTRELAVQSQEELFRF 57 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 GV V GG S+ ++ + L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEA Sbjct: 58 GRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 117 Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217 DEML++GF +DIE I+ P++R+ L+FSAT+ AI + + K+ V IA++ Sbjct: 118 DEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTE 177 Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 +D + V +++ + + ++ + +IVF T+ V T+ L F+ + G+ Sbjct: 178 LVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGD 237 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q +R L+ ++G V +ATDVAARG+D+ + V + ++ +PE+ +HR GRTGR Sbjct: 238 LDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 297 Query: 338 AGRKGMSV-FVIPQNM 352 AG+ G S+ FV P M Sbjct: 298 AGKSGQSITFVAPNEM 313 >gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18] gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18] Length = 574 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 191/347 (55%), Gaps = 7/347 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +AL+ G + +QE L L +D++ A+TG+GKT+ FGL ++ +D Sbjct: 23 QDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVGRDDE 82 Query: 69 ----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 AP AL + PTRELA+QVG +L VA GGV + + L+ G Sbjct: 83 GWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAELLRRG 142 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +VVGTPGR+ D + LN+ +K VVLDEADEMLDLGF+ +E IL P+ R+ ++ Sbjct: 143 LEVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDRQSML 202 Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALS--DRDNAIVNILRY 241 FSAT+ + +A+ Y +R++ A E+ + R V+ D+D I ILR Sbjct: 203 FSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMIGRILRA 262 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G ++F T+ +R + L F L G+L+Q R AL+ R G+ + +AT Sbjct: 263 TGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGKVDILVAT 322 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARGID+ D+ VI+ + + + LHR+GRTGRAG +G +V ++ Sbjct: 323 DVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLV 369 >gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum ATCC 14931] gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum ATCC 14931] Length = 495 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 142/413 (34%), Positives = 217/413 (52%), Gaps = 12/413 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +QE + L KDV+ AQTG+GKT AFGL + EN Sbjct: 17 KAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEHVDVEN------ 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL I+PTRELA+Q EL L + V V V GG + R+ R L+ I+VGTP Sbjct: 71 PAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNPQILVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R +++S ++ +VLDEADEML++GF +DIE I+ +P +R+ L+FSAT+ P Sbjct: 131 GRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + D V I ++ +D V ++ + + ++ IVF Sbjct: 191 IKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGR 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q RS ++ ++G + +ATDVAARG+D+ Sbjct: 251 TKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDISG 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369 + V + ++ S+P++ +HR GRTGRAG G+S+ FV P M E+L R + + Sbjct: 311 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRARMLPL-- 368 Query: 370 EPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 +P EA R + A D L D + LL K+D ++ A L Sbjct: 369 KPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALL 421 >gi|168701792|ref|ZP_02734069.1| RNA helicase DeaD [Gemmata obscuriglobus UQM 2246] Length = 572 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 160/524 (30%), Positives = 257/524 (49%), Gaps = 26/524 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L+ GY T +Q + P + D++ A TG+GKT AF L + L R P Sbjct: 34 ERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFSLPILHGLARSTARTKPT 93 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L + PTRELA+QV + GV V GG + ++ R L G +VV TP Sbjct: 94 S----LILVPTRELAMQVAESVAKYGQPLGVRVLPIYGGAPMDQQIRALDRGIDVVVATP 149 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR DH+R L + + VVLDEADEMLD+GF +DIE IL ++P +R+ +FSAT++P Sbjct: 150 GRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPTERQTALFSATMAPR 209 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +A + K+A +++ + + + A +V + A+ +L A++ Sbjct: 210 IKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAALGRVLDGESPAAALI 269 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC TR+ V T+ L ++ AL G ++Q R +++ R G+A + +ATDVAARG+D Sbjct: 270 FCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQANLLVATDVAARGLD 329 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + L V++ L EN +HR GR GRAGR+G+++ V Q + R + + Sbjct: 330 VEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGALRAIERHTGQRIEY 389 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRI-H 424 P+ +RE+ +R +++ E + M L+ + DP +A L++ H Sbjct: 390 GQVPTAATLREKRLERT--KVAIRETVAAGELEAFRAMFGSLVGELDPTDVALAALKLAH 447 Query: 425 RA--GLCAPEEITPVSLVSGR-DRFRDDSRAF--KVGGGSRDNFKGS----SWFSLSVGS 475 RA G PV+ V R DR D+ + G G+ F+G + +S G Sbjct: 448 RARGGDIDDGPDIPVATVPQRGDRNGRDNNPLPPRRGAGA---FRGPGPRLARIFISAGR 504 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 + R L+ + +G+ + I +I + + V+V D + Sbjct: 505 EAGIMPRDLVGAIANEAGLPGREIHSIEITERFSLVDVPEDAAE 548 >gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533] gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533] Length = 484 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 194/354 (54%), Gaps = 8/354 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ I +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + Sbjct: 1 MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L ++D A+ I PTRELA+Q EL L V V GG + R+ R Sbjct: 61 QNLDKQHDSIQ------AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ I+VGTPGRL DH++ ++IS +K +VLDEADEMLD+GF DIE IL + K Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSK 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 + L+FSAT+ I + + + D V I + + ID V +++ + + ++ Sbjct: 175 HQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 A++F T+ V T+ L + + G+LSQ +R + L+ R G+ + + Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +P + +HR GRTGRAG+ GMSV FV P + Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPNSYVHRIGRTGRAGQNGMSVTFVTPNEI 348 >gi|320158479|ref|YP_004190857.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O] gi|319933792|gb|ADV88655.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O] Length = 459 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 203/365 (55%), Gaps = 9/365 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L GY +T +Q L L KDV+ +TGSGKT F L L S L R Sbjct: 17 TLDTLGYTEMTPIQAQSLPLVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVSRFRVQ--- 73 Query: 74 APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QV E+ L + V GG+ + + L++GAHI+VGTP Sbjct: 74 ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEHGAHILVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ ++++ L +VLDEAD ML++GF+D I+ I+D++P +R+ L+FSAT Sbjct: 131 GRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTLLFSATFPEQ 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVFC 251 I T+A ++ V + S Q S I+ R L + +RDNA+ +L H ++ +VFC Sbjct: 191 IETIASKVMQNPEMVKVES-THQKSTIEQRFYQLESTEERDNALEALLLTHRPESTVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V T L F V+ L G++ Q+ER AL M + + +ATDVAARG+D+ Sbjct: 250 NTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVD 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +L+ VI+ ELS +PE +HR GRTGRAG KG+++ + R ER+ + V Sbjct: 310 NLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIEEYMGIDVHPAK 369 Query: 372 APSVE 376 P E Sbjct: 370 LPQPE 374 >gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4] gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4] Length = 679 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 161/531 (30%), Positives = 268/531 (50%), Gaps = 47/531 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ + GY +++Q A + L +DV+ AQTG+GKT AF L + S + Sbjct: 60 VAKAVRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGKTAAFALPILSLI-------D 112 Query: 71 PA-SAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ +P AL +APTRELA+QV + + V V GG + + L+ GA I+ Sbjct: 113 PSVKSPQALILAPTRELALQVAEACVTYSAGMPQVNVLPIYGGQAYGIQLSGLRRGAQII 172 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH++ L++S L+ +VLDEADEML +GF++D+E IL +P+ ++ +FSAT Sbjct: 173 VGTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPESTQVALFSAT 232 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI +++ Y D V +AS+ I R VLV D+ +A+ IL I Sbjct: 233 MPSAIRRISQKYLTDPTEVKVASKTSTAPTIQQRYVLVNHRDKLDALTRILEVEDFDAMI 292 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+++ + L F ++G++ Q R ++ ++DGR + +ATDVAARG+ Sbjct: 293 MFVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVATDVAARGL 352 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+P + V++ ++ + E+ +HR GRTGRAGR G ++ + +R ++ R + Sbjct: 353 DVPRISHVVNYDIPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQIERATRQPLT 412 Query: 369 WEPAPSVEAIRE----RDAQRI---LQDP---LFLDSIQGDEKKMVDVLLAKHDPE--KI 416 PSV+ + E + AQ I L DP LF +++V+ ++H I Sbjct: 413 EVQLPSVDDVNEMRMAKFAQSITESLDDPNIALF--------RRLVEEYASEHSVSMADI 464 Query: 417 AAGFLRIHRAG----LCAPEEITPVSLVSGRDR--------FRDDSRAFKVGGGSRDNFK 464 AA R + PE R+R +R F G + K Sbjct: 465 AAALATQSRNSDEFLMREPER------PQRRERQDDRGGDRRDRPARNFSDGPRPSRSGK 518 Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + + ++VG + + +M L +G++ IG I ++ D + VE+ A Sbjct: 519 DMAQYRIAVGKRNNVKPGSIMGALANEAGLSGGDIGRISIRFDHSIVELPA 569 >gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC 49030] gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC 49030] Length = 459 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/341 (39%), Positives = 186/341 (54%), Gaps = 4/341 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E+L+ G + +Q L L D++ A+TG+GKT+ FG+ L +L E R Sbjct: 15 IVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQRILDEQSR-E 73 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP AL + PTRELA QV +L + GG + R L++GA +VVG Sbjct: 74 QGRAPRALVVVPTRELAHQVADDLRVASRTFSPSIVTIYGGKDFEPQIRALKDGADVVVG 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + LN SH+ V DEADEMLDLGF D+E I+ + P KR+ ++FSAT+ Sbjct: 134 TPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAALPAKRQTMLFSATMP 193 Query: 191 PAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNA 247 + LA+ Y Q +R AS+ S + V A S D+ + ILR G Sbjct: 194 GQVIALARRYMTQPTHIRATQASDTSTTSVNTKQYVYRAHSMDKTELVGRILRAEGRGRT 253 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + R T L FQ AL G+L+Q R AL+ RDG V +ATDVAARG Sbjct: 254 IIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGTTDVLVATDVAARG 313 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ID+ D+ VI+ + + + +HR GRTGRAG G++V +I Sbjct: 314 IDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGNTGIAVTLI 354 >gi|104783928|ref|YP_610426.1| ATP-dependent RNA helicase DbpA [Pseudomonas entomophila L48] gi|95112915|emb|CAK17643.1| ATP-dependent RNA helicase [Pseudomonas entomophila L48] Length = 461 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 202/359 (56%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY ++T +Q L L+ +D++ A+TGSGKT AFG+ L + + N R+ A Sbjct: 21 LDALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +EL L A+ + + GGVS+ + L++GAHI+VGTPG Sbjct: 78 ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+ L + L +VLDEAD MLD+GF D I I+ +P +R+ L+FSAT I Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LAK++ + +V + + HSD I+ R + + R A+ +L ++ ++ + FC Sbjct: 195 EQLAKDFMRQPQQVKVEA---LHSDSQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L AL G+L Q++R L M + + V +ATDVAARG+D+ Sbjct: 252 FTKQQCEDLVTHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L+LVI+ EL+ + E +HR GRTGRAG KG+++ ++ RA+ + N + WE Sbjct: 312 GLDLVINVELARDAEIHVHRVGRTGRAGEKGVAISLVAPAEGHRAQAIEDLQNKPLRWE 370 >gi|150390712|ref|YP_001320761.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950574|gb|ABR49102.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens QYMF] Length = 433 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/383 (35%), Positives = 202/383 (52%), Gaps = 5/383 (1%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I AL+ GY T +QE + L+ D+L AQTG+GKT AF + + Sbjct: 2 LFENLNIIKPIQRALTTEGYTEATPIQEKAIPSLLKGMDLLGCAQTGTGKTAAFAIPILQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L +E + AL +APTRELA+Q+ E G+ V GGVS H + + Sbjct: 62 GLSSEQRNLKGSRQIQALILAPTRELAIQIADSFETYGKHLGLRTLVIYGGVSQHPQTKS 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G I+V TPGRL D I K + ++ +K VLDEAD MLD+G D+ I+ P R Sbjct: 122 LNRGIDILVATPGRLLDLINQKFVRLNSIKYFVLDEADMMLDMGMIHDVRRIIKYIPAVR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + + FSAT+ I LA K+ V+V I + I+ V S++ ++++L+ Sbjct: 182 QTMFFSATMPAEIAKLADQILKEPVKVEITPVSSTVDIIEQAVYYVNKSNKVQLLIHLLK 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +A+VF T+ + K L + Q A+ G SQ R AL ++ + R+ +A Sbjct: 242 SKAIVSALVFSRTKHGADKIVKSLEKAGLQAQAIHGNKSQNARQLALNNFKERKTRILVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAE 357 TD+AARGID+ +L VI+ +L PE +HR GRTGRAG G+++ Q N+ + + Sbjct: 302 TDIAARGIDVEELSHVINFDLPEVPETYVHRIGRTGRAGLGGIAISFCAQEEKNLLKEIQ 361 Query: 358 RLFREANVSVVWEPAPSVEAIRE 380 +L ++ V P P VE + E Sbjct: 362 KLISKSVPVVEDHPFPLVETLNE 384 >gi|323490311|ref|ZP_08095526.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2] gi|323395981|gb|EGA88812.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2] Length = 481 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 198/372 (53%), Gaps = 6/372 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I +AL GY T VQE ++ L + D+ V +QTGSGKT AFG+ + + E Sbjct: 11 ISEQIVKALDGLGYTEPTEVQEKVIPVALSKTDLTVKSQTGSGKTAAFGIPICELVDWEE 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 ++ P AL + PTRELA QV ++ + + A G ++ +L+ H Sbjct: 71 NK------PQALILTPTRELADQVKEDITNIGRFKRIKAAAVYGKQPFAYQQAELKQKCH 124 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DHI L + ++ +VLDEADEML++GF + +E I++ PK+R ++FS Sbjct: 125 VVVGTPGRVLDHIERGTLKLEQIEYLVLDEADEMLNMGFVEQVESIINKLPKQRTTMLFS 184 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + L K Y D + IAS ID+ +VA + + + ++ + Sbjct: 185 ATLPENVEKLQKKYMIDPQHIEIASTETLTDQIDHSLFVVAEQKKFSLLRDVTIIENPDS 244 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+FC T+ +V + L +H + L G + Q++R+ + + G R +ATDVAAR Sbjct: 245 CIIFCRTKDNVDFVMEQLEKHYYTCDKLHGGMLQEDRTAVMNEFKRGEFRYLVATDVAAR 304 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GID+ + VI+ +L E+ +HRSGRTGRAG+ G ++ + N + + Sbjct: 305 GIDIDSITHVINFDLPMEKESYVHRSGRTGRAGKTGKAISFVTPNEDKFLAEIESYIGFE 364 Query: 367 VVWEPAPSVEAI 378 + APSV + Sbjct: 365 IPHRTAPSVHEV 376 >gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367] gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367] Length = 523 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/352 (35%), Positives = 191/352 (54%), Gaps = 9/352 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY T +Q + L +DV+ AQTG+GKT AF L + + N+ Sbjct: 14 KAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPILEKIDKSNENVQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL ++PTRELA+Q E+ L V V GG + R+ + L+N +VVGTP Sbjct: 72 ----ALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIKSLKNHPQVVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHIR L + H++ +VLDEADEML++GF DDIE I+ P++R+ ++FSAT+ P Sbjct: 128 GRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEERQTMLFSATMPPE 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + KD V I ++ ID V ++ + + IVF Sbjct: 188 IKRVGVQFMKDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTRFFDVQSPDLTIVFTR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V L + + G+L+Q+ R+ + R G+ + +ATDVAARGID+ D Sbjct: 248 TKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDILVATDVAARGIDIND 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFR 361 + V + ++ +P++ +HR GRTGRAG+ G+S+ FV P M R E+L + Sbjct: 308 VTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLREIEKLTK 359 >gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN] gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN] Length = 495 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 142/413 (34%), Positives = 217/413 (52%), Gaps = 12/413 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +QE + L KDV+ AQTG+GKT AFGL + EN Sbjct: 17 KAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEHVDVEN------ 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL I+PTRELA+Q EL L + V V V GG + R+ R L+ I+VGTP Sbjct: 71 PAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNPQILVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R +++S ++ +VLDEADEML++GF +DIE I+ +P +R+ L+FSAT+ P Sbjct: 131 GRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + D V I ++ +D V ++ + + ++ IVF Sbjct: 191 IKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGR 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q RS ++ ++G + +ATDVAARG+D+ Sbjct: 251 TKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDISG 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369 + V + ++ S+P++ +HR GRTGRAG G+S+ FV P M E+L R + + Sbjct: 311 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRARMLPL-- 368 Query: 370 EPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 +P EA R + A D L D + LL K+D ++ A L Sbjct: 369 KPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALL 421 >gi|253574214|ref|ZP_04851556.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846691|gb|EES74697.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 375 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 201/359 (55%), Gaps = 13/359 (3%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 + FE N+ ++ L +G VN T VQ A + +D +V AQTG+GKT+AF L + Sbjct: 2 LTTFESLNVSPLLVRKLQGQGIVNPTPVQAAAIPVLQSGEDAIVQAQTGTGKTLAFLLPI 61 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRE 117 + E AL I PTRELA+Q+ E L A G+ V GG V R+ Sbjct: 62 LEKIRPERPEAQ------ALIITPTRELAIQITAEARKLAEAMEGLSVLAAYGGQDVERQ 115 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R L+NGA +V+GTPGRL DH+R L + ++ +VLDEAD+ML +GF ++E IL P Sbjct: 116 LRKLKNGAQLVIGTPGRLLDHLRRGSLTLGAVRYLVLDEADQMLHMGFLAEVEEILSLVP 175 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAI 235 + R+ ++FSAT+ + LAK Y + IA +R D R +LV +DR +A+ Sbjct: 176 RSRQTMLFSATMPGNVKRLAKTYMDKPRDIQIAETSRVTLD-SIRQILVECTDRTKQSAL 234 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 + +R A++FC T+ S + L FQ L G+LSQ +R ++ R + Sbjct: 235 IESIRSQRPYLAVIFCRTKRRASTLNEALQAAGFQSDELHGDLSQAKREQVMRAFRSAKL 294 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +ATDVAARGID+ + V + ++ + ++ +HR GRTGRAG KG++V F P++M+ Sbjct: 295 ELLVATDVAARGIDVEGVTHVFNYDIPHDVDSYIHRIGRTGRAGEKGVAVTFAAPKDME 353 >gi|319951788|ref|YP_004163055.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM 14237] gi|319420448|gb|ADV47557.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM 14237] Length = 429 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 199/369 (53%), Gaps = 6/369 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I +AL+ GY N T +QE + L+ KD+L AQTG+GKT AFG+ + + N Sbjct: 8 IAEPILKALTSEGYENPTPIQEKSIPILLKGKDLLGVAQTGTGKTAAFGIPILHHIYTNN 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 AL + PTRELA+Q+G TG+ V GGV ++ L+ G Sbjct: 68 SGIGKRKIK-ALVVTPTRELAIQIGESFTAYARFTGIKNTVIFGGVKQGKQTDALRQGVE 126 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL D + +++ L+ VVLDEAD+MLD+GF D++ I+ P KR+ L FS Sbjct: 127 ILIATPGRLLDLMNQGFISLRDLEYVVLDEADQMLDMGFIHDVKKIIAKLPAKRQSLFFS 186 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I L++ + +V I E ++ V D+ +V+++ AK Sbjct: 187 ATMPKTIVELSQKILGEFEQVTIKPEQATAEKVEQAIYFVPKGDKVKLLVHLIETKEAKA 246 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ ++ K+L + A+ G SQ R NAL +DG+ V +ATD+AAR Sbjct: 247 VLVFSRTKHGANKIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLTVLVATDIAAR 306 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GID+ DL LV++ +L + PE +HR GRTGRA G+++ + R ER + + Sbjct: 307 GIDIDDLSLVVNYDLPNVPETYVHRIGRTGRANASGVAL-----SFCDREERAYLKDIQK 361 Query: 367 VVWEPAPSV 375 ++ + P+V Sbjct: 362 LIKQTIPTV 370 >gi|293395719|ref|ZP_06640001.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582] gi|291421656|gb|EFE94903.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582] Length = 445 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 197/358 (55%), Gaps = 12/358 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L + A Sbjct: 4 LNELGYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKINVSQ------VA 57 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGTP Sbjct: 58 TQALILCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGAQLDSLVHAPHIVVGTP 116 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ +H+R K L + +K +VLDEAD MLD+GF DDI+ ++ +P +R+ L+FSAT Sbjct: 117 GRIQEHLRKKTLVLDEVKVLVLDEADRMLDMGFADDIDQVISYTPPQRQTLLFSATYPAG 176 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ + V + + + I R R +V +R+ + +VFC+ Sbjct: 177 IERISDRVQRAPLSVEV-DDGDAPTTIAQRFYETTRDQRPALLVAAIRHFQPTSCVVFCN 235 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ D Sbjct: 236 TKRDCQSVFEALEARGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKD 295 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369 LELV++ ELS +PE +HR GRTGRAG G+++ PQ M RA L + + W Sbjct: 296 LELVVNYELSFDPEVHVHRIGRTGRAGMSGLAISLCAPQEMT-RAHALEEYLDCKLQW 352 >gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens AG86] gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens AG86] Length = 362 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 214/361 (59%), Gaps = 20/361 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA 64 N+ + + A+ +G+ T +Q ++ L E +++ A+TGSGKT +F + L L+ Sbjct: 7 NLSENVLNAIKNKGFEKPTDIQMKVVPLFLNESCNIVAQARTGSGKTASFAIPLIE-LID 65 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 E+ S A+ + PTRELA+QV E++ L + + GG ++H + + L+ Sbjct: 66 ED------SGIEAIILTPTRELAIQVADEIDSLKGNKNLKITKVYGGKAIHPQIKALKK- 118 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A+IVVGTPGR+ DHI LN+ ++K +LDEADEML++GF +D+E IL++ K +R+L+ Sbjct: 119 ANIVVGTPGRVLDHINRGTLNLKNVKYFILDEADEMLNMGFIEDVEKILNACNKNKRILL 178 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241 FSAT+ I LAK Y D V + + +++I+ + + ++R + IL+ + Sbjct: 179 FSATMPKEILNLAKKYMGDYEFV----KAKINANIEQSYIEINENERFETLCRILKDREF 234 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +G +VFC T+ +L + F+ A+ G+L+Q +R +++ + + ++ IAT Sbjct: 235 YG----LVFCKTKKDTKDLANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKKIKILIAT 290 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DV +RGID+ DL VI+ L NPE+ +HR GRTGRAG+KGM++ +I + R+ + + R Sbjct: 291 DVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGMAISIINRREYRKLKHIER 350 Query: 362 E 362 + Sbjct: 351 K 351 >gi|229164405|ref|ZP_04292334.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803] gi|228619055|gb|EEK75952.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803] Length = 481 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 199/365 (54%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVGEEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG+KG ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGKKGKAITFITPYENRFLEEIETYIGFAIPKAQAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286] gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33] gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9] gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236] gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9] gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33] gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286] gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236] Length = 653 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 30 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 84 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 85 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 143 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 144 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 203 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 204 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 263 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 264 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 323 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 324 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 377 >gi|255534879|ref|YP_003095250.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10] gi|255341075|gb|ACU07188.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10] Length = 571 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 212/379 (55%), Gaps = 16/379 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEA---ILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 N+ I +A+ E G+ + T +Q+ ++ D+R D++ AQTG+GKT AF L + Sbjct: 8 NLSPEILKAIGELGFESPTEIQKQTIPFISTDIR--DLIALAQTGTGKTAAFSLPIL--- 62 Query: 63 LAENDRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119 D S + L + PTREL +Q+ ++++ Y+K + GG S+ + R Sbjct: 63 ----DMIDDGSRKIQFLVLCPTRELCLQITKDIKN-YSKYMNNIKTTAVYGGSSITDQIR 117 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ I+VGTPGR+ D I K L+ S ++ +VLDEADEML +GF+DD+E IL +P+ Sbjct: 118 SLRDKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPET 177 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 + +FSAT++ + ++K+Y R+++ S N +I + +V + A+ ++ Sbjct: 178 KHTYLFSATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLI 237 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +I+FC TR L ++ + AL G+LSQ +R ++ R + + Sbjct: 238 DANPNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILV 297 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARG+D+ L VIH L +PE +HRSGRTGRAG+ G+S+ +I R+ +++ Sbjct: 298 ATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQI 357 Query: 360 FREANVSVVWEPAPSVEAI 378 + +V + P+ +AI Sbjct: 358 KMSTKIDIVEKKVPTGDAI 376 >gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str. Eklund 17B] gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str. Eklund 17B] Length = 432 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 186/340 (54%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I AL+E GY N T +QE + L KD L AQTG+GKT AF + + + Sbjct: 7 NIIEPIQRALTEAGYTNPTPIQEQSIPSLLNGKDFLGCAQTGTGKTAAFAIPVLQNIAQN 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL +APTRELA+Q+ T + V GGVS + R L G Sbjct: 67 QKKSDKPRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILGEGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D I K +++S++K VLDEAD M D+G D++ I+ PK R+ L+F Sbjct: 127 DILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + +L + KD V+V +A + I V D+ + +V++L+ K Sbjct: 187 SATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESIK 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + K LA+ + A+ G SQ R AL ++G+ RV +ATD+AA Sbjct: 247 SLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIRVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ L VI+ +L PE +HR GRTGRAG G+++ Sbjct: 307 RGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAI 346 >gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101] gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1] gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101] gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1] Length = 643 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 20 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 314 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367 >gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter segnis ATCC 21756] gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC 21756] Length = 524 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/339 (36%), Positives = 189/339 (55%), Gaps = 6/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ GY T +Q + L +DVL AQTG+GKT AF L L L + + A Sbjct: 15 QAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDKLQSGRAK---A 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL IAPTRELA QV E T + A+ IGGVS + + L G +++ TP Sbjct: 72 RMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDRGVDVLIATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P K++ L FSAT+ P Sbjct: 132 GRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249 IT L K + +D VR+ +A +++I V V SD + A+ ++ + IV Sbjct: 192 ITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIEKAQIETGIV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+ + V K L H + + G+L Q +R L R G ++ +A+DVAARG+D Sbjct: 252 FCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVASDVAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P + V + ++ + ++ +HR GRTGRAGR G++ ++ Sbjct: 312 IPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLV 350 >gi|193066966|ref|ZP_03047935.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019] gi|192959556|gb|EDV89990.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019] Length = 457 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEAHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVTLEAE 381 >gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar eltor str. N16961] gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80] gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52] gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457] gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33] gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2] gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10] gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757] gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80] gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52] gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457] gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33] gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2] gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10] gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757] Length = 663 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 40 ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 94 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 95 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 154 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 213 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 214 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 334 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387 >gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c] gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c] Length = 579 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 206/377 (54%), Gaps = 9/377 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P + +AL + GY T +Q + + D+L +AQTG+GKT AF L + + + A Sbjct: 13 NLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDAN 72 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQN 123 N S L +APTRELA+QV + +YA + V GG S + R L+ Sbjct: 73 N------SNTQLLVLAPTRELAIQVAEAFQ-VYASFSRKLNVLPIYGGSSYDNQIRQLRR 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DHI+ L + +LK +VLDEADEML +GF DD+E+IL +P +R+ Sbjct: 126 GAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQTA 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + K Y D +V I S+ S I R VA + A+ I+ Sbjct: 186 LFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHKLEALTRIMEVEE 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + ++ L+ + V L+G++ Q R ++ ++ G+ + +ATDV Sbjct: 246 FDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 ARG+D+ + VI+ ++ + E+ +HR GRTGRAGR+G ++ I +R + R Sbjct: 306 VARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFSIERAT 365 Query: 364 NVSVVWEPAPSVEAIRE 380 S+ P PS+ + E Sbjct: 366 RQSIDPMPIPSISQLNE 382 >gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 43247] Length = 597 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 170/518 (32%), Positives = 262/518 (50%), Gaps = 37/518 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S+ GY + +Q A + P + +DV+ AQTG+GKT AF + + S L D P Sbjct: 31 AVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLEGAGDGSGP-R 89 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132 P AL +APTRELA+QV A V + I GG S + L+ GA ++VGTP Sbjct: 90 KPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGVQLAGLRRGAQVIVGTP 149 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L+IS L+ +VLDEADEML +GF +D+E IL +P +++ +FSAT+ A Sbjct: 150 GRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAETPDDKQVALFSATMPSA 209 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ Y D + + S+ +I R + V+ + +A+ L IVF Sbjct: 210 IRRLAQRYLNDPQEITVKSKTATAQNITQRYLQVSHQRKLDALTRFLEVETFDAMIVFVR 269 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L F VA++G+++Q +R + ++ G + +ATDVAARG+D+ Sbjct: 270 TKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGIDILVATDVAARGLDVDR 329 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ +R R A S + E Sbjct: 330 ISHVVNYDIPHDTESYVHRIGRTGRAGRAGNALLFVSPR--ERHLLRSIERATRSTLTEI 387 Query: 372 A-PSVEAIRERDAQRILQDPLFLDSI----QGDEKKMVDVLLAKHDPEK-------IAAG 419 PSVE + +AQR+ + F DSI D M L+ + + AA Sbjct: 388 GLPSVEDV---NAQRVAR---FADSITENLSSDNLDMFRQLIENYARDNDVAMADIAAAL 441 Query: 420 FLRIHRAG-LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 L G L AP+ P DR RA + GGS + + ++VG K K Sbjct: 442 ALETRDGGFLMAPDP--PEG-----DRPPRRERAPRRAGGS------FATYRIAVGRKHK 488 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ + G+ R G I ++ D + VE+ D Sbjct: 489 VSPGAIVGAIANEGGLTRGDFGNISIRDDFSLVELPDD 526 >gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J] gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J] Length = 561 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 199/348 (57%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L KDV+ AQTG+GKT AFGL + + + Sbjct: 29 NLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTD 88 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 89 ENIIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALKSGA 142 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+ P +R+ L+F Sbjct: 143 HIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPSERQTLLF 202 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + K+ V I ++ + +++ V V ++ + + ++ + Sbjct: 203 SATMPAPIKEIGVKFMKNPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMDVDQPE 262 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ + + + +ATDVAA Sbjct: 263 LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILVATDVAA 322 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 323 RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGESITFVSPNEM 370 >gi|325859866|ref|ZP_08172996.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS 18C-A] gi|327312944|ref|YP_004328381.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289] gi|325482792|gb|EGC85795.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS 18C-A] gi|326946277|gb|AEA22162.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289] Length = 628 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 215/399 (53%), Gaps = 12/399 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I A+SE G+ + VQE ++ P L DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSEEIRRAISELGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L L D S + A+ ++PTREL +Q+ +L ++ + +A GG S+ Sbjct: 60 PL----LQRIDTGSKDTQ--AVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + L++G I+V TPGRL D + + + VVLDEADEML++GF++ I IL Sbjct: 114 TQIHQLRHGVQIIVATPGRLIDLMHRGKARLDKVSNVVLDEADEMLNMGFQESITEILTG 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P+ R L+FSAT+S + +AK Y D + + S N ++++ +V D+ A+ Sbjct: 174 VPEDRNTLLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNARDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 ++ ++ AIVFC T+ L + + +L G+LSQQ+R +Q R Sbjct: 234 KRLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLT 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ L + EN HRSGRTGRAG+KG S+ +I + + Sbjct: 294 QILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394 + RE V P+ E I ++ + + D L D Sbjct: 354 VRNIEREIGKEFVDGTLPAPEEICKKQLFKTMDDILKTD 392 >gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99] gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99] Length = 491 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIK-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L + +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R +++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|319937738|ref|ZP_08012141.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1] gi|319807173|gb|EFW03787.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1] Length = 479 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 121/351 (34%), Positives = 201/351 (57%), Gaps = 8/351 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64 NI I +AL + GY T VQ A++ P+L+ E+DV+V A+TGSGKT AF + L +++ Sbjct: 7 NIDGRIQDALEKLGYSEATEVQSAVI-PELKQERDVIVKAKTGSGKTAAFAIPLLDSVVW 65 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 E ++ P L + PTRELA+QV + + + + G + +DL+ Sbjct: 66 EENK------PQVLVLTPTRELAIQVKEDFDNIGTYKKIKTLAIFGKQPYKFQTQDLKQK 119 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 H+VV TPGR+ DH++ + SHLK +VLDEADEML++GF + +E I++ P KR + Sbjct: 120 THVVVATPGRILDHLQRGTFDASHLKYLVLDEADEMLNMGFIETVEKIIEKLPVKRTTCL 179 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LA + K+ V+VNI + I+ A V ++ ++ ++ + Sbjct: 180 FSATLPEEIKKLAAKFMKNPVQVNIKQSQVINQKIETYAYEVMSYEKAGFLLKLIVHEKP 239 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +AI+FC T+ V+ +L ++ V + G + Q +R + R G+ + +ATDVA Sbjct: 240 SSAIIFCETQERVNEVYDMLYKNGISVHKIHGGMLQTDRLENMNDFRLGKVQFLVATDVA 299 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ARGID+ ++ VI+ +L +N +HR GRT R G+ G+++ ++ ++ +R Sbjct: 300 ARGIDIENISHVINYDLPREAQNYIHRIGRTARIGKAGIAISLLSKDDYKR 350 >gi|150396691|ref|YP_001327158.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium medicae WSM419] gi|150028206|gb|ABR60323.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae WSM419] Length = 499 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 209/389 (53%), Gaps = 19/389 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+++ GY T +Q + P L+ +D+L AQTG+GKT +F L + + L Sbjct: 9 LSQKVLSAVTDAGYTIPTPIQIGAIPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGR 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P L + PTRELA QV + + +A+ IGGVS + R L+ GA Sbjct: 69 AR---ARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH L +S ++ +V+DEAD MLD+GF DIE I P R+ L FS Sbjct: 126 VLICTPGRLLDHCERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----Y 241 AT+ P I LA + ++ RV +A R + I LVA +D +LR Sbjct: 186 ATMPPEIQKLADRFLQNPERVEVA--RRSSTAITVTQRLVAAHGKDYEKRAVLRELIRSQ 243 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 KNAI+FC+ + V+ + L H F V AL G++ Q+ R L +DG ++ +A+ Sbjct: 244 EDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVAS 303 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G S ++ + + A+ + + Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDIKFADAIEK 363 Query: 362 EANVSVVW---------EPAPSVEAIRER 381 V W EP S ++ R+R Sbjct: 364 LIGQEVEWHNGDLSELPEPMESHDSRRDR 392 >gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] Length = 481 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 122/370 (32%), Positives = 200/370 (54%), Gaps = 6/370 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +ALS Y + T VQ +L L E+DV+V +QTGSGKT +FG+ L + E ++ Sbjct: 15 VAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCELVNWEENK-- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA QV ++ + + A G +++ +L+ HIVVG Sbjct: 73 ----PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQKTHIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + ++ +V+DEADEML++GF D +E I+ P +R ++FSAT+ Sbjct: 129 TPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTMLFSATLP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L++ Y K V V I + S ID+ + V + + ++ + I+F Sbjct: 189 EDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVISVENERKFELLKDVTTVENPDSCIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V+ L + + + G + Q++R + + G+ R +ATDVAARGID+ Sbjct: 249 CRTQEQVNTLLDDLDDFGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ VI+ +L E+ +HR+GRTGRAG+KG ++ + +R + S+ Sbjct: 309 DNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEKRMLSEIEEYIGFSIPTS 368 Query: 371 PAPSVEAIRE 380 PS E +++ Sbjct: 369 APPSKEEVQQ 378 >gi|195938012|ref|ZP_03083394.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4024] Length = 457 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKDTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVTLEAE 381 >gi|16129304|ref|NP_415859.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli str. K-12 substr. MG1655] gi|89108191|ref|AP_001971.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli str. K-12 substr. W3110] gi|157160855|ref|YP_001458173.1| ATP-dependent RNA helicase DbpA [Escherichia coli HS] gi|170020291|ref|YP_001725245.1| ATP-dependent RNA helicase DbpA [Escherichia coli ATCC 8739] gi|170081022|ref|YP_001730342.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli str. K-12 substr. DH10B] gi|188494462|ref|ZP_03001732.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638] gi|194436972|ref|ZP_03069071.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1] gi|238900578|ref|YP_002926374.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli BW2952] gi|253773655|ref|YP_003036486.1| ATP-dependent RNA helicase DbpA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161422|ref|YP_003044530.1| ATP-dependent RNA helicase DbpA [Escherichia coli B str. REL606] gi|256022943|ref|ZP_05436808.1| ATP-dependent RNA helicase DbpA [Escherichia sp. 4_1_40B] gi|300927858|ref|ZP_07143420.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1] gi|300948429|ref|ZP_07162531.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1] gi|300954597|ref|ZP_07167042.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1] gi|301022682|ref|ZP_07186535.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1] gi|301647156|ref|ZP_07246977.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1] gi|307137985|ref|ZP_07497341.1| ATP-dependent RNA helicase DbpA [Escherichia coli H736] gi|312971541|ref|ZP_07785716.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70] gi|331641910|ref|ZP_08343045.1| ATP-independent RNA helicase DbpA [Escherichia coli H736] gi|416881|sp|P21693|DBPA_ECOLI RecName: Full=ATP-independent RNA helicase dbpA gi|1742212|dbj|BAA14946.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli str. K12 substr. W3110] gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli str. K-12 substr. MG1655] gi|157066535|gb|ABV05790.1| ATP-independent RNA helicase DbpA [Escherichia coli HS] gi|169755219|gb|ACA77918.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739] gi|169888857|gb|ACB02564.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli str. K-12 substr. DH10B] gi|188489661|gb|EDU64764.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638] gi|194423955|gb|EDX39943.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1] gi|238860048|gb|ACR62046.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli BW2952] gi|242377119|emb|CAQ31847.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli BL21(DE3)] gi|253324699|gb|ACT29301.1| DEAD/DEAH box helicase domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973323|gb|ACT38994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli B str. REL606] gi|253977536|gb|ACT43206.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli BL21(DE3)] gi|260449522|gb|ACX39944.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1] gi|299881170|gb|EFI89381.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1] gi|300318431|gb|EFJ68215.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1] gi|300452053|gb|EFK15673.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1] gi|300464143|gb|EFK27636.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1] gi|301074642|gb|EFK89448.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1] gi|309701644|emb|CBJ00951.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407] gi|310336138|gb|EFQ01338.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70] gi|315135984|dbj|BAJ43143.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1] gi|323937669|gb|EGB33937.1| DEAD/DEAH box helicase [Escherichia coli E1520] gi|323942290|gb|EGB38461.1| DEAD/DEAH box helicase [Escherichia coli E482] gi|323962410|gb|EGB57993.1| DEAD/DEAH box helicase [Escherichia coli H489] gi|323973547|gb|EGB68732.1| DEAD/DEAH box helicase [Escherichia coli TA007] gi|331038708|gb|EGI10928.1| ATP-independent RNA helicase DbpA [Escherichia coli H736] gi|332343042|gb|AEE56376.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88] Length = 457 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIATLEAE 381 >gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM 2048] gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603] gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603] gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM 2048] Length = 538 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 134/433 (30%), Positives = 234/433 (54%), Gaps = 16/433 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 70 -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AI+F Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + ++ +PE+ +HR GRTGRAG+KG+++ + + + + R V A Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMDA 368 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 P+++ E QR++ + L +I+ D K++ + +L ++D + A L++ + Sbjct: 369 PTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAALKM----M 422 Query: 429 CAPEEITPVSLVS 441 + TP++L S Sbjct: 423 TKEPDTTPIALTS 435 >gi|254429992|ref|ZP_05043699.1| DbpA RNA binding domain family [Alcanivorax sp. DG881] gi|196196161|gb|EDX91120.1| DbpA RNA binding domain family [Alcanivorax sp. DG881] Length = 459 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 201/377 (53%), Gaps = 12/377 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T VQ L L+ DV+ A TGSGKT AFGL L L N R+ A Sbjct: 19 LNTLGYATMTPVQAQSLPFVLKGHDVIAQASTGSGKTAAFGLGLLHPL---NPRYYGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV E+ L G + V GG + + L++GA IVVGTPG Sbjct: 76 ---LVLCPTRELADQVAGEIRRLARGPGNIKVLTLCGGQPIGPQIGSLEHGAQIVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+ L++ L +VLDEAD MLD+GF D I ++ +P +R+ L+FSAT I Sbjct: 133 RVLKHLSKGTLSLEGLNTLVLDEADRMLDMGFYDSIAEVIRQTPSRRQTLLFSATYPAGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + V + + + +S I+ R V ++R+ A+ + + +VFC T Sbjct: 193 KQLAETFMNNPQHVEVEALH-DNSQIEQRYYEVDPAEREEAVARAIACFRPVSCVVFCVT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L + L+ +L Q+ER L + + V +ATDVAARG+D+ +L Sbjct: 252 KKQCQDVVNQLCRQGMSAMVLNSDLEQRERDEVLTLFANRSLSVLVATDVAARGLDIDNL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 ++VI+AELS P+ +HR GRTGRAG KG+++ ++ RRA + + W P Sbjct: 312 DMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAMAIEELQGAPLNWHPVS 371 Query: 374 SVEAIRERDAQRILQDP 390 S++ RE D LQ P Sbjct: 372 SLKP-REGDT---LQPP 384 >gi|317470864|ref|ZP_07930245.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA] gi|316901691|gb|EFV23624.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA] Length = 478 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 196/345 (56%), Gaps = 8/345 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL+ GY T++Q+ ++ P L K+++ A TGSGKT AF + + + E + Sbjct: 14 ILEALNGLGYKKPTNIQQEVIPPMLAGKNIVAKAPTGSGKTAAFAIPICQNVRWEEN--- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP AL + P RELAVQV +E+ + K + V GG + ++ R L+ +HIV G Sbjct: 71 ---APQALVLEPARELAVQVSQEMFHIGRKKRLKVPAVFGGFPIDKQIRTLKQKSHIVAG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHIR + L +S+++ +V+DEAD MLD+GF D+++ IL P R+ +FSAT+ Sbjct: 128 TPGRVMDHIRRETLKLSNVQWLVIDEADLMLDMGFIDEVKQILSLVPADCRISLFSATLK 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA + +AV V + Q S I + + + + ++IL ++ ++F Sbjct: 188 PEIRELADGFIPEAVLVMQEAGEEQASAITEKLYFASQERKYDTFLDILMDENPQSCMIF 247 Query: 251 CSTRASVS-RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 C TR + F K+ + +F L G++ Q+ER + R G R IATDVAARGID Sbjct: 248 CGTREMTNVLFQKLRRKRIF-CGMLHGDMEQRERLKTVDAFRRGGFRFLIATDVAARGID 306 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ V++ + + E +HR GRTGR G G +V ++ +N QR Sbjct: 307 FEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGTAVSLVTENDQR 351 >gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54] Length = 481 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 199/344 (57%), Gaps = 2/344 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71 ++++E GY T +Q + + +DV+ +AQTG+GKT AF L + L+ N SP Sbjct: 31 QSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASP 90 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P+ AL + PTRELA QV ++ +T + AV GGV + ++ L+ G ++V Sbjct: 91 ARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEVLVA 150 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ K +N+S + +VLDEAD MLD+GF D+E I+ P +R+ L+FSAT S Sbjct: 151 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFS 210 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L ++Y V + +A+ N + I A ++ + A+V++++ G K IVF Sbjct: 211 NEIRKLGRSYLNHPVEIEVAARNATANTITQIAYKMSGDQKRAAVVHLVKSRGLKQVIVF 270 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +T+ +R + L + ++ G+ +Q +R AL+ + G V +ATDVAARG+D+ Sbjct: 271 SNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVATDVAARGLDV 330 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ +L N E+ +HR GRTGRAG G ++ + + +R Sbjct: 331 AGVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTADEER 374 >gi|320195643|gb|EFW70268.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327] Length = 457 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2] gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2] Length = 574 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 159/533 (29%), Positives = 270/533 (50%), Gaps = 41/533 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 I + L E GY + +QE + L+ D+L AQTG+GKT AF L + S + L + D Sbjct: 16 ILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQTGTGKTAAFALPILSKIDLKQKD-- 73 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P L +APTRELA+QV + G+ V GG + R L+ G H+V Sbjct: 74 -----PQVLVLAPTRELAIQVAEAFQTFSRGVKGLHVLPIYGGSEYGTQIRALKRGVHVV 128 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DHI+ L + LK ++LDEADEML +GF DD+E+IL +P R++ +FSAT Sbjct: 129 VGTPGRVMDHIKKGTLKLDTLKVMILDEADEMLRMGFIDDVEWILKHTPDTRQIALFSAT 188 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + +A Y +D V I + S I+ + LV+ + +A+ IL I Sbjct: 189 MPKEVHRIANTYLQDPTEVIIKQKAATASLIEQKYWLVSGLHKLDALTRILEAETFDGII 248 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + AL+G+++Q +R + ++ G+ + IATDV ARG+ Sbjct: 249 IFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDILIATDVVARGL 308 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS- 366 D+ + VI+ ++ + E+ +HR GRTGRAGR G ++ FV P R RL R S Sbjct: 309 DVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAP-----RERRLLRSIEAST 363 Query: 367 ---VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPE--KIA 417 + P+ + I + R +D + +D+ QG + +KMV+ + + ++ +IA Sbjct: 364 KKKITQMELPTAQEINDSRITR-FKDKI-VDAAQGTDLDFYQKMVESIESDNNIPAIEIA 421 Query: 418 AGFLRIHRAGLCAPEEITPVSLVS------GRDRFRDDSRAFKVGGGSRDN--------F 463 AG ++ + + + PV GR+R ++ + G R N Sbjct: 422 AGLAKLLQGDVPFFLDEKPVKHKEFKERDGGRERNPRRAKGERSERGDRGNRSRRQTPPN 481 Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 +G + F + VG + + ++ + +G++ + I + ++ + + V++ +D Sbjct: 482 EGMARFRVEVGRQHGVKPGNIIGCIANEAGLDGEFIQKLTIEDNYSMVDLPSD 534 >gi|74312285|ref|YP_310704.1| ATP-dependent RNA helicase DbpA [Shigella sonnei Ss046] gi|73855762|gb|AAZ88469.1| ATP-dependent RNA helicase [Shigella sonnei Ss046] gi|323168225|gb|EFZ53911.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G] Length = 457 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAVISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|294340821|emb|CAZ89216.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Thiomonas sp. 3As] Length = 666 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/386 (35%), Positives = 216/386 (55%), Gaps = 13/386 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + +AL + GY + +Q A + P L +DVL AQTG+GKT AF L + + + N Sbjct: 14 LPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAKIDC-N 72 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125 R + AL +APTRELA+QV A G V GG S + L+ GA Sbjct: 73 ARHT-----QALVLAPTRELAIQVAEAFARYAAHLPGFNVLPIYGGQSYVPQLASLKRGA 127 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ DH+ L + L +VLDEADEML +GF DD+E IL +P +R++ +F Sbjct: 128 HVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVALF 187 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI +A+ Y +D + I + + I R +V+ + +A+ IL + Sbjct: 188 SATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEPFE 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + + LA F AL+G++ Q R +Q ++DG+ + +ATDVAA Sbjct: 248 GMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE 362 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ FV P +++ R ER R+ Sbjct: 308 RGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATRQ 367 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQ 388 + PS EA+ + R ++ Sbjct: 368 PITQMQL---PSTEAVNDSRISRFME 390 >gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC 25745] gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC 25745] Length = 526 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 143/417 (34%), Positives = 221/417 (52%), Gaps = 16/417 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ + GY T +Q + L KD++ AQTG+GKT AFGL + + +N Sbjct: 12 ILKAVLDNGYDEPTPIQAETIPGVLEGKDIIGQAQTGTGKTAAFGLPILQNVDLDNPNIQ 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ I+PTRELA Q E+ L V V GG + R+ L++ IVVG Sbjct: 72 ------AIIISPTRELAAQTQAEIFKLGKYKKAKVQVVYGGSDIRRQINALKSHPQIVVG 125 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI K + + H+K +VLDEAD+MLD+GF DIE I++ +P +R+ L+FSAT+ Sbjct: 126 TPGRLLDHIGRKTIRLDHVKTLVLDEADDMLDMGFLPDIEHIIEQTPSERQTLLFSATMP 185 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + D ++ + S+ +D V ++ + + +L K A++F Sbjct: 186 APIKKIGVKFMTDPKQITVKSKELTADLVDQYYVRSKEFEKFDILTRVLDVQAPKLAVIF 245 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V +K L + + G+L+QQ R + L+ R+G+ + +ATDVAARG+D+ Sbjct: 246 GRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFREGQLDILVATDVAARGLDI 305 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSV 367 + V + ++ +PE+ +HR GRTGRAG G SV FV M R E L ++ + + Sbjct: 306 SGVTHVYNYDIPQDPESYVHRIGRTGRAGATGTSVTFVTNWEMDYLRDVEHLTKKRLLPM 365 Query: 368 VWEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 +P EA R A Q I + D + +E+ VD LL +HD + + A L Sbjct: 366 --KPPTEEEAFAGRAAMAEQSIEELVQKTDVAKFEEQ--VDHLLEQHDAKTLVAALL 418 >gi|297521633|ref|ZP_06940019.1| ATP-dependent RNA helicase DbpA [Escherichia coli OP50] Length = 457 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIATLEAE 381 >gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450] gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450] Length = 641 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + + D L AQTG+GKT AF L L + L + Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAFSLPLLNKLELSQRK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L +G+ V GG S+ + R L+NGAHIVVGTP Sbjct: 75 -PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I + L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P Sbjct: 134 GRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + +D + +++A +N ++ + +V ++D A+ +L +IVF Sbjct: 194 LKNIVERFLRDPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367 >gi|119477499|ref|ZP_01617690.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] gi|119449425|gb|EAW30664.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] Length = 608 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/344 (38%), Positives = 199/344 (57%), Gaps = 11/344 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 + +A+S GY + +Q A + L D+L AQTG+GKT AF L L S + L +N Sbjct: 18 VQKAVSIVGYEQPSPIQAATIPHLLNGDDLLGVAQTGTGKTAAFALPLLSRIDLKKN--- 74 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIV 128 +P L +APTRELA+QV + ++ G V GG + + R L+ GAH+V Sbjct: 75 ----SPQVLVLAPTRELAIQVAEAFKTYASQMKGFHVLPIYGGQDMSGQLRQLKRGAHVV 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+R LN+ L +VLDEADEML +GF DD+E+IL+ +P KR++ +FSAT Sbjct: 131 VGTPGRVMDHLRRGSLNLDGLTGLVLDEADEMLRMGFIDDVEWILEHTPPKRQVALFSAT 190 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRYHGAKNA 247 + I +A Y D V IA++ I+ R ++V DR +AI IL Sbjct: 191 MPKPIRKVADRYLSDPKEVRIATDATTAPRIEQRYLIVNGFDRKLDAITRILEADDFDAM 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + + + L + AL+G+++Q R + ++ + + +ATDVAARG Sbjct: 251 IIFVRTKTATAELAEKLEARGYSASALNGDMNQALRERTINRLKKKQLDIIVATDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 ID+ + V++ ++ +PE +HR GRTGRAGR+G ++ FV P+ Sbjct: 311 IDVERVSHVLNFDIPYDPEAYVHRIGRTGRAGREGKAILFVAPR 354 >gi|330961130|gb|EGH61390.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 459 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 19 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 76 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTLLFSATYPVGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368 >gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61] gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3] gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52] gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61] gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3] gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52] Length = 467 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 149/458 (32%), Positives = 239/458 (52%), Gaps = 40/458 (8%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F+ + Q + +A+ G+ T +Q + L+ KDV+ AQTG+GKT AFG+ + Sbjct: 1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + +N A AL +APTRELA+QV EL + A V V GG + R+ Sbjct: 61 VEKVDVKN------GAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L+ H++VGTPGR+ DHI L + H+ VVLDEADEML++GF +DIE IL P Sbjct: 115 RALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPA 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I +A+ + + V + ++ +I + V + + + + Sbjct: 175 ERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRL 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + AIVF T+ V + L + + G+LSQ +R + L+ ++G + Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEIL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----- 352 +ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G+++ FV P+ + Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354 Query: 353 -----QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKM 403 +R+ ER+ +P EA+ QRI + L L+ ++ + K+ Sbjct: 355 IERTTKRKMERM----------KPPTLDEAL--EGQQRIAIEKL-LNVVETENLSFYKRA 401 Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVS 441 + LL +HD I A L++ L + TPV L Sbjct: 402 AEELLEEHDSVTIVAACLKM----LTREPDTTPVQLTE 435 >gi|149184|gb|AAA61345.1| RNA helicase [Klebsiella pneumoniae] Length = 659 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 174/564 (30%), Positives = 274/564 (48%), Gaps = 46/564 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + E Sbjct: 33 ILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 87 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 88 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 146 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248 AI + + + K+ V I S DI ++ A R N A+V L AI Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 265 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + + AL+G+++Q R AL+ ++DGR + IATDVAARG+ Sbjct: 266 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGL 325 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 326 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 385 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-H--------DPEKIAAG 419 P+ E + +R ++ ++ + LLAK H D E +AA Sbjct: 386 EVELPNAELLSKRRLEKFAAK--VQQQLESSDLDQYRALLAKIHATAEGEELDVETLAAA 443 Query: 420 FLRIHRA--GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---------------- 461 L++ + L P PV+ + R FRD +F G D Sbjct: 444 LLKMAQGERSLIVP----PVAPMRPRREFRDRDDSFDRRGDRNDRGPRGDREDRPKRERR 499 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517 + + + VG E R ++ + I+ + IG I++ + +E+ + Sbjct: 500 DVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 559 Query: 518 VDLLRRTVKLDKGIQLKYLGGEKP 541 + RT L+K + ++ LG +P Sbjct: 560 LQHFTRTRILNKPMNMQLLGDAQP 583 >gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A] gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A] Length = 442 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 128/342 (37%), Positives = 195/342 (57%), Gaps = 20/342 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 +S GY T +Q + L+ +D+L+SAQTGSGKT AF L + L AE + + Sbjct: 18 ISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPILQQLAAEPTK---SKL 74 Query: 75 PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + PTRELA QV RE + LY+ T +GG + ++ R L+ G I Sbjct: 75 PRALIVIPTRELAQQVQDSVFQYSREFKELYSIT------LVGGTAYQKQIRALKKGVSI 128 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGRL DH+R L++S ++ +VLDEAD MLD+GF DD+ I+ P+ R+ +M SA Sbjct: 129 VVATPGRLLDHVREGHLDLSQIRYLVLDEADRMLDMGFSDDMHAIIKQCPQNRQTIMSSA 188 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKN 246 T + +A + +A ++ IA E +I Y NA+++ +L Sbjct: 189 TWDGNVGKIAAGFTHNAEKIIIAPETSHIEEISY---FTDDQAHKNAVLDRLLADEAVTQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF +T+++ L E+ FQ L G+L QQ+R+ ++ R+G+ V +ATD+AAR Sbjct: 246 CIVFTATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRIIERFRNGQINVLVATDIAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+P + VI+ +L E+ +HR GR+GRAGR G+++ ++ Sbjct: 306 GIDIPAISHVINYDLPRQSEDYVHRIGRSGRAGRSGVALNLV 347 >gi|307309898|ref|ZP_07589548.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|306909616|gb|EFN40110.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|315060597|gb|ADT74924.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli W] gi|323378840|gb|ADX51108.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11] Length = 457 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSILPLEAE 381 >gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803] gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803] Length = 528 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 70 -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 V AP+++ E QR++ + L +I+ D K++ + +L ++D + A L Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|331646674|ref|ZP_08347777.1| ATP-independent RNA helicase DbpA [Escherichia coli M605] gi|330911207|gb|EGH39717.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86] gi|331045426|gb|EGI17553.1| ATP-independent RNA helicase DbpA [Escherichia coli M605] Length = 457 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208] Length = 399 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 197/343 (57%), Gaps = 7/343 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + +++ Sbjct: 15 IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL IAPTRELA+QV EL L V V GG + R+ R L+ IVVG Sbjct: 75 ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + H++ +VLDEADEML++GF DDIE IL P +R+ L+FSAT+ Sbjct: 129 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + + + I ++ I+ V V ++ + + +L + AIVF Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREM 351 >gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi 4047] gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi 4047] Length = 538 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 198/348 (56%), Gaps = 7/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ G+ + +QE + L +DV+ AQTG+GKT AFGL + + Sbjct: 7 NLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTLNKIRTA 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ AL IAPTRELAVQ EL GV V GG S+ ++ + L++GA Sbjct: 67 DNTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKSGA 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGRL D I+ K L + H++ ++LDEADE L++GF +DIE I+ P R+ L+F Sbjct: 121 HVVVGTPGRLLDLIKRKALRLDHVETLILDEADECLNMGFLEDIEAIISRVPDDRQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + + KD V + ++ + ++D V V ++ + + ++ + Sbjct: 181 SATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVF T+ V T+ L F+ + G+L Q +R ++ ++ + + +ATDVAA Sbjct: 241 LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+ + V + +++ +PE+ +HR GRTGRAG+ G S+ FV P M Sbjct: 301 RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348 >gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] gi|133739409|emb|CAL62459.1| Putative ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 468 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 142/398 (35%), Positives = 214/398 (53%), Gaps = 31/398 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71 +AL+E GY T VQ + + +D++VS+QTGSGKT AF L ++++ P Sbjct: 14 KALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALHKFAVQSEQQQPE 73 Query: 72 ----------------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109 A+ P L + PTRELA+QV + A V AV I Sbjct: 74 GGRTPNQEAQSARSRGDRPRFKAAQPKMLVLTPTRELALQVTTSTDKYGAFMKRVKAVSI 133 Query: 110 -GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 GG+ ++ + L I+V TPGRL DH+ ++ S L+ +VLDEAD MLD+GF DD Sbjct: 134 LGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLDEADRMLDMGFIDD 193 Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-A 227 IE I+ ++P+ R+ ++FSAT+ + T+AK KD + + IA +H +I V Sbjct: 194 IEKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATKHENIKQGVHFVDD 253 Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 LS ++ + ++LR A+VF +T+ L F AL G++ Q R+ L Sbjct: 254 LSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTL 313 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +R G+ RV +ATDVAARGID+P + V + +L PE+ +HR GRTGRAGR G++V + Sbjct: 314 DGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGIAVSL 373 Query: 348 I--PQNMQ-RRAERLFRE-ANVSVV--WEPAPSVEAIR 379 + + M +R ER ++ VSV+ +EP + A R Sbjct: 374 VNHAEGMNVKRIERFIKQLIPVSVIEGFEPKRTASAPR 411 >gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193] gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193] Length = 527 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 123/351 (35%), Positives = 196/351 (55%), Gaps = 12/351 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +A++E GY + T +Q + P L +DVL AQTG+GKT +F L + TLLA Sbjct: 8 NLNAKVLKAIAEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLAR 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + A P +L + PTRELA QV + + A+ IGGVS + + + G Sbjct: 67 GR--ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L F Sbjct: 125 DVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNI 238 SAT++P I + + R+ +A + I+ VL S +D A+ + Sbjct: 185 SATMAPEIERITNTFLSAPERIEVARQASASETIEQHVVLFKASRKDREASEKRTALRAL 244 Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 + G K N I+FC+ ++ V K L ++ F + G+L Q +R+ L R+G+ R Sbjct: 245 INAEGEKLTNGIIFCNRKSDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFREGKLR 304 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 + +A+DVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ + Sbjct: 305 ILVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITI 355 >gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3894-4] Length = 644 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G+V+ T +Q A + L +D L AQTG+GKT AF L L + L + Sbjct: 20 ALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ +LDEADEML +GF DD+ +I++ +P+ + ++FSAT+ P Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V++A N+ + ++ + +V ++D A+ +L +IVF Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ R + Sbjct: 314 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367 >gi|303237006|ref|ZP_07323578.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN] gi|302482786|gb|EFL45809.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN] Length = 382 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 14/354 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I A+ E G+ VQEA++ P L DV+ AQTG+GKT A+G+ Sbjct: 1 MKTFEELGVSEEIRHAIEELGFEQPMPVQEAVI-PYLLGNGNDVIALAQTGTGKTAAYGI 59 Query: 57 ALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSV 114 + + P AL ++PTREL +Q+ +L ++ G+ VA GG S+ Sbjct: 60 PVLQ-------KVDPTKKETQALILSPTRELCLQIADDLSDFSKYIGGLHVAAVYGGASI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ GA I+V TPGRL D ++ + ++ VVLDEADEML++GF + I I + Sbjct: 113 EMQSRQLRKGAQIIVATPGRLIDLMKRGVAKLENVNNVVLDEADEMLNMGFTESINAIFE 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P +R L+FSAT+S I +AK+Y D + + S N +++ +V D+ A Sbjct: 173 GIPSERNTLLFSATMSKEIEKIAKSYLHDYKEIVVGSRNEGAEKVNHIYYMVHAKDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I+ Y+ + AI+FC T+ L + AL G+LSQQ+R +Q R Sbjct: 233 LKRIVDYYPSIFAIIFCRTKVETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRQHN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+KG S+ +I Sbjct: 293 VQFLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISII 346 >gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402] gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 498 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 206/376 (54%), Gaps = 13/376 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + G+ T +Q + + +DVL AQTG+GKT AFG+ L ++ Sbjct: 16 ALEKLGFTEPTPIQMDSIPHTMAGRDVLGQAQTGTGKTGAFGIPLI-------EKVKGRE 68 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +L +APTRELAVQV +L+ G+ V GG+ + R+ R+L+ IVVGTPG Sbjct: 69 GIQSLILAPTRELAVQVAEQLKAFSRGQGIQVTTVFGGMPIDRQIRELKKKPQIVVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 R+ DH+ + L + ++LDEADEM+++GF DD+ FI+D PK+ R+ ++FSAT+ A Sbjct: 129 RVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKENRQTMLFSATMPKA 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L + + K+ V V + N I+ +V ++ + N L H + AIVF Sbjct: 189 IQELVQKFMKNPVIVKTMTNNDSDPSIEEFYTIVKELEKFDTFTNFLDVHRPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 249 TKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369 + V + ++ + E+ HR GRTGRAG+ GM++ FV P M R+ E+ + + + Sbjct: 309 VTHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQIEKA-KNRQMQALR 367 Query: 370 EPAP-SVEAIRERDAQ 384 P P V RE+D + Sbjct: 368 PPTPGEVMKAREQDVK 383 >gi|120553901|ref|YP_958252.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter aquaeolei VT8] gi|120323750|gb|ABM18065.1| ATP-dependent RNA helicase DbpA [Marinobacter aquaeolei VT8] Length = 457 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 137/356 (38%), Positives = 193/356 (54%), Gaps = 8/356 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + GY T VQ + L KDV+ AQTGSGKT AFG+ + + R Sbjct: 17 LDQLGYQQPTPVQAEAVPLALAGKDVIAMAQTGSGKTAAFGIPIIEAIDPRCFRVQ---- 72 Query: 75 PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +L + PTRELA QV + L E AK V V GGV + + L +GAHIVVGTPG Sbjct: 73 --SLVLCPTRELADQVAKALRELARAKDNVKVLTLCGGVPIGPQIGSLSHGAHIVVGTPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+R L++ LK +VLDEAD MLD+GF + + I+ SP R+ L+FSAT PAI Sbjct: 131 RVDDHLRKGTLSLDGLKVLVLDEADRMLDMGFEEVVTSIVSQSPGGRQTLLFSATWPPAI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ +Q V + S+ + I+ + R A+ +L +++VFC+T Sbjct: 191 RKLSEQFQSKPEDVRVESKAATIT-IEESFYEIQPDQRAAAVAALLSRFQPVSSLVFCTT 249 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L F ++L G+L Q+ER +AL + V +ATDVAARG+D+ L Sbjct: 250 KRDCDELSDELGRLGFSALSLHGDLDQRERDSALVRFANQSCTVLVATDVAARGLDIKGL 309 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 LVI+AE + +PE HR GRTGRAG +G +V + + RL E V+W Sbjct: 310 PLVINAEPARDPEVHTHRVGRTGRAGEQGHAVTLCTPRQGHKITRLEAERGEPVLW 365 >gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273] gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272] gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272] gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273] Length = 530 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTRKE----- 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 70 -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 V AP+++ E QR++ + L +I+ D K++ + +L ++D + A L Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|161521775|ref|YP_001585202.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC 17616] gi|189352063|ref|YP_001947690.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC 17616] gi|221210620|ref|ZP_03583600.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1] gi|160345825|gb|ABX18910.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans ATCC 17616] gi|189336085|dbj|BAG45154.1| ATP-independent RNA helicase [Burkholderia multivorans ATCC 17616] gi|221169576|gb|EEE02043.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1] Length = 464 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 8/358 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + GYV++T +Q A L L D++ A+TGSGKT AF LAL S L A RF Sbjct: 22 LEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDAR--RFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + V + E S I R V ++R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRSPKEVKL-EERHDDSKIRQRFYEVTETERLHAVGMLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 E VI+ +++ +PE +HR GRTGRA + G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIEQAQKRDVEWRP 372 >gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] Length = 655 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 129/395 (32%), Positives = 216/395 (54%), Gaps = 15/395 (3%) Query: 29 AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS----PASAPLALAIAPTR 84 A+L P L+ +D++ A+TG+GKT+AFG+ + L E ++ P L +APTR Sbjct: 38 AVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTR 97 Query: 85 ELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 ELA QV +E++ + VC+ GGVS ++ L G +VVGTPGR+ D I G+ Sbjct: 98 ELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRS 154 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L + ++ +VLDEAD+ML +GF + +E IL++ P KR+ ++FSAT+ + LA+ Y + Sbjct: 155 LKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDN 214 Query: 204 AVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRASVSRF 260 + +++ + + I A+ + + + +++ Y IVF T+ Sbjct: 215 PLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEV 274 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 + L+ + AL G++SQ +R L R G+ V +ATDVA+RG+D+P+++LVIH E Sbjct: 275 SLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYE 333 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380 L ++PE +HRSGRTGRAG++G ++ + + +R L R+ + P+V + E Sbjct: 334 LPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLE 393 Query: 381 RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415 A +++ L+ + D K K EK Sbjct: 394 SSADQVVAT---LNGVHPDSIKFFSATAQKLYEEK 425 >gi|307249783|ref|ZP_07531761.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858198|gb|EFM90276.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 596 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/407 (34%), Positives = 218/407 (53%), Gaps = 10/407 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +Q+ + L +DVL AQTGSGKT AF L L LA+ D P L Sbjct: 2 GFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQID--PTKRHPQML 55 Query: 79 AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 +APTRELA+QV E GV V GG + R L+ G+ +VVGTPGR+ D Sbjct: 56 VMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILD 115 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HIR L++S L+++VLDEADEML +GF DD+E ++ P+ + +FSAT+ I + Sbjct: 116 HIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRIT 175 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + + +D V I + R DI LV +++A++ L AI+F T+ Sbjct: 176 RRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGT 235 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T++ + ++ AL+G+++QQ R L ++ GR + +ATDVAARGID+ + LV+ Sbjct: 236 IDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVV 295 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFREANVSVVWEPAPS 374 + ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L ++ V Sbjct: 296 NFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEVAIPNHEI 355 Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + A R + + L ++ + + D+ A D E++AA + Sbjct: 356 LMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 402 >gi|271499180|ref|YP_003332205.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii Ech586] gi|270342735|gb|ACZ75500.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586] Length = 624 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 168/564 (29%), Positives = 266/564 (47%), Gaps = 48/564 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ALSE GY + +Q + L +DVL AQTGSGKT AF L L + + A+ Sbjct: 17 ILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNIKAD----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV E+ GV V GG + R L+ G +VV Sbjct: 72 -LKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQGPQVVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + D V I S DI V ++ A++ L AI+ Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERIMKLTIPE 370 Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419 P+ E + +R A ++ Q ++ + M LL K P E +AA Sbjct: 371 VELPNAELLGQRRLAKFAAKVQQ------QLESSDLDMYRALLGKLQPQEELDIETLAAA 424 Query: 420 FLRI---HRAGLCAPEEITPVSLVSG--------------RDRF-RDDSRAFKVGGGSRD 461 L++ R + P+ + DR R D R + R Sbjct: 425 LLKMAQGERPLILPPDPVVERRPRREFRDRDERFERRGERNDRAPRGDDRPAR---RERR 481 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517 + + VG E R ++ + I+ + IG I++ + +E+ D Sbjct: 482 EVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGDL 541 Query: 518 VDLLRRTVKLDKGIQLKYLGGEKP 541 + RT L+K + ++ +G +P Sbjct: 542 LSHFTRTRILNKPMNMQLMGEAQP 565 >gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601] gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601] Length = 512 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 148/443 (33%), Positives = 241/443 (54%), Gaps = 32/443 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++++ G+ T +QE + L KD++ AQTG+GKT AFGL + + + +N+ Sbjct: 17 KSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPIINKIDQKNNNIQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL IAPTRELA+QV EL L Y K V+AV GG + R+ R L+ I+VGT Sbjct: 75 ----ALIIAPTRELAIQVSEELYKLSYDKHARVLAVY-GGSDISRQIRSLKKNPQIIVGT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I + L + +++ +VLDEADEML++GF DDIE IL S P +R+ L+FSAT+ Sbjct: 130 PGRMLDLINRRVLKLENVETLVLDEADEMLNMGFIDDIEAILKSVPSERQTLLFSATMPD 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + V I ++ I+ V V ++ + + +L + AI+F Sbjct: 190 PIRRIAERFMHSPELVRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIIFG 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V ++ L + + G+L+Q +R + L+ ++G+ V +ATDVAARG+D+ Sbjct: 250 RTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDIS 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERLF 360 + V + ++ +PE+ +HR GRTGRAG++GM++ FV P+ M ++R E L Sbjct: 310 GVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMEPL- 368 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 W+ A + + R AQ +++ + +++ D LL K+D IAA Sbjct: 369 ----KPPTWDEAFAGQL---RVAQEKIEEAITQENL-ADYAVFAGQLLEKYDATDIAAAM 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443 L++ + + TPV + R Sbjct: 421 LKM----IAKEPDKTPVHITEER 439 >gi|329905038|ref|ZP_08273973.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium IMCC9480] gi|327547774|gb|EGF32547.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium IMCC9480] Length = 461 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 207/376 (55%), Gaps = 24/376 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73 L GY +T +Q L L +D++ A+TGSGKT AFG+ + R +P Sbjct: 21 LDSLGYHEMTPIQAKSLPVILDRRDLIAQAKTGSGKTAAFGIGILQ-------RLNPTWF 73 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL I PTRELA QV EL L +A ++ +C GG + + L++GAHI+VGT Sbjct: 74 AIQALVICPTRELADQVSNELRRLARFADNTKILTLC-GGAPMRPQIASLEHGAHIIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI +++S ++ +VLDEAD M+D+GF ++I I+ + P +R+ L+FSAT Sbjct: 133 PGRLRDHIGRGSIDLSTVQTLVLDEADRMVDMGFYEEISGIVSACPTRRQTLLFSATYPD 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I + + +D + + + QH D I+ R V DR++A+ +L + +A+ Sbjct: 193 DIRKSSAPFLRDPTEITVEA---QHDDNRIEQRFYEVGYDDRNDAVGRLLNNYKPASALA 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ L F +AL GEL Q+ER L + +G V +ATDVAARG+D Sbjct: 250 FCNTKIHCRELADELRAQGFSAMALYGELEQRERDEILVLFANGSCSVLVATDVAARGLD 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + LE+VI+ ++S + E +HR GRTGR +G+++ + N ++ + + + V W Sbjct: 310 IQSLEMVINVDVSKDTEVHIHRVGRTGRGAARGLALSLCAPNEKKWVKLIEDYQHGPVSW 369 Query: 370 --------EPAPSVEA 377 P P++EA Sbjct: 370 FDLADLEVAPGPALEA 385 >gi|322831220|ref|YP_004211247.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] gi|321166421|gb|ADW72120.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] Length = 640 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 150/422 (35%), Positives = 225/422 (53%), Gaps = 25/422 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q + L +DVL AQTGSGKT AF L L + A Sbjct: 21 ALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHNIDAS------LK 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV + ++ GV V GG + R L+ G +VVGTP Sbjct: 75 APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQGPQVVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ LN+S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPEA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + KD V I S DI V ++ A+V L AI+F Sbjct: 195 IRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRFLEAEDFDAAIIFVR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 255 TKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR R + R +++ Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIPEVE 373 Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFL 421 P+ E + ER A ++ Q L+S D+ + LLAK P E +AA L Sbjct: 374 IPTAEVLGERRLAKFAAKVQQQ---LESSDLDQYR---ALLAKLQPAEELDVETLAAALL 427 Query: 422 RI 423 ++ Sbjct: 428 KM 429 >gi|191165035|ref|ZP_03026879.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A] gi|309797091|ref|ZP_07691489.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7] gi|190904807|gb|EDV64512.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A] gi|308119261|gb|EFO56523.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7] Length = 457 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSILPLEAE 381 >gi|187731861|ref|YP_001880183.1| ATP-dependent RNA helicase DbpA [Shigella boydii CDC 3083-94] gi|187428853|gb|ACD08127.1| ATP-independent RNA helicase DbpA [Shigella boydii CDC 3083-94] Length = 457 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAATLPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAVISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 576 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 206/377 (54%), Gaps = 9/377 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P + +AL + GY T +Q + + D+L +AQTG+GKT AF L + + + A Sbjct: 13 NLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDAN 72 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQN 123 N S L +APTRELA+QV + +YA + V GG S + R L+ Sbjct: 73 N------SNTQLLVLAPTRELAIQVAEAFQ-VYASFSRKLNVLPIYGGSSYDNQIRQLRR 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DHI+ L + +LK +VLDEADEML +GF DD+E+IL +P +R+ Sbjct: 126 GAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQTA 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I + K Y D +V I S+ S I R VA + A+ I+ Sbjct: 186 LFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHKLEALTRIMEVEE 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + ++ L+ + V L+G++ Q R ++ ++ G+ + +ATDV Sbjct: 246 FDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 ARG+D+ + VI+ ++ + E+ +HR GRTGRAGR+G ++ I +R + R Sbjct: 306 VARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFSIERAT 365 Query: 364 NVSVVWEPAPSVEAIRE 380 S+ P PS+ + E Sbjct: 366 RQSIDPMPIPSISQLNE 382 >gi|327482576|gb|AEA85886.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 4166] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 129/357 (36%), Positives = 198/357 (55%), Gaps = 8/357 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+AL L N R+ A Sbjct: 19 LEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLDPL---NPRYFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +EL L A + + GGVS+ + L++GAH++VGTPG Sbjct: 76 ---LVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEHGAHVIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H++ L + L +VLDEAD MLD+GF D I I+ +P KR+ L+FSAT +I Sbjct: 133 RVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPAKRQTLLFSATYPASI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA ++ + +V + S + S I+ R + R +A+ +L ++ + FC T Sbjct: 193 EQLAASFMRAPQQVRVESLHTD-SQIEQRFYEIDPEQRLDAVARLLASFRPESCVAFCFT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L AL+G+L Q++R L M + V +ATDVAARG+D+ L Sbjct: 252 KQQCQELVEYLNAKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVATDVAARGLDIDAL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++VI+ EL+ +PE +HR GRTGRAG +G++ ++ RA+ + + + W Sbjct: 312 DMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIEKLQKSPLNWH 368 >gi|300937578|ref|ZP_07152392.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1] gi|300457386|gb|EFK20879.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1] Length = 457 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 IT ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 ITAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|15801822|ref|NP_287840.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 EDL933] gi|15831181|ref|NP_309954.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str. Sakai] gi|168749013|ref|ZP_02774035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4113] gi|168756028|ref|ZP_02781035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4401] gi|168769429|ref|ZP_02794436.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4486] gi|168775172|ref|ZP_02800179.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4196] gi|168782877|ref|ZP_02807884.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4076] gi|168788327|ref|ZP_02813334.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC869] gi|168799657|ref|ZP_02824664.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC508] gi|208811167|ref|ZP_03253000.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4206] gi|208815022|ref|ZP_03256201.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4045] gi|208820345|ref|ZP_03260665.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4042] gi|209399223|ref|YP_002270403.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4115] gi|217329397|ref|ZP_03445477.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. TW14588] gi|254792938|ref|YP_003077775.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str. TW14359] gi|261224337|ref|ZP_05938618.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli O157:H7 str. FRIK2000] gi|261257409|ref|ZP_05949942.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli O157:H7 str. FRIK966] gi|291282438|ref|YP_003499256.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str. CB9615] gi|331652393|ref|ZP_08353412.1| ATP-independent RNA helicase DbpA [Escherichia coli M718] gi|12515409|gb|AAG56454.1|AE005371_10 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933] gi|13361392|dbj|BAB35350.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai] gi|187769343|gb|EDU33187.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4196] gi|188016533|gb|EDU54655.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4113] gi|188999660|gb|EDU68646.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4076] gi|189356796|gb|EDU75215.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4401] gi|189361561|gb|EDU79980.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4486] gi|189371812|gb|EDU90228.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC869] gi|189377976|gb|EDU96392.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC508] gi|208724673|gb|EDZ74381.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4206] gi|208731670|gb|EDZ80358.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4045] gi|208740468|gb|EDZ88150.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4042] gi|209160623|gb|ACI38056.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4115] gi|209771330|gb|ACI83977.1| ATP-dependent RNA helicase [Escherichia coli] gi|209771332|gb|ACI83978.1| ATP-dependent RNA helicase [Escherichia coli] gi|209771334|gb|ACI83979.1| ATP-dependent RNA helicase [Escherichia coli] gi|209771336|gb|ACI83980.1| ATP-dependent RNA helicase [Escherichia coli] gi|217317836|gb|EEC26264.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. TW14588] gi|254592338|gb|ACT71699.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli O157:H7 str. TW14359] gi|290762311|gb|ADD56272.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str. CB9615] gi|320189895|gb|EFW64547.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str. EC1212] gi|320659158|gb|EFX26750.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA 5905] gi|326340988|gb|EGD64781.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str. 1125] gi|326343226|gb|EGD66993.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str. 1044] gi|331050671|gb|EGI22729.1| ATP-independent RNA helicase DbpA [Escherichia coli M718] Length = 457 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVTLEAE 381 >gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba] gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba] Length = 494 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 202/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 35 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 91 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 92 ----ALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 147 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 148 GRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 207 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+++L + +IVF Sbjct: 208 IKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQAPEKSIVFTR 267 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 268 TKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 327 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 328 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 387 Query: 373 PSV 375 P++ Sbjct: 388 PTI 390 >gi|307252129|ref|ZP_07534028.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860429|gb|EFM92443.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 596 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/407 (34%), Positives = 218/407 (53%), Gaps = 10/407 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+V + +Q+ + L +DVL AQTGSGKT AF L L LA+ D P L Sbjct: 2 GFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQID--PTKRHPQML 55 Query: 79 AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 +APTRELA+QV E GV V GG + R L+ G+ +VVGTPGR+ D Sbjct: 56 VMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILD 115 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HIR L++S L+++VLDEADEML +GF DD+E ++ P+ + +FSAT+ I + Sbjct: 116 HIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRIT 175 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + + +D V I + R DI LV +++A++ L AI+F T+ Sbjct: 176 RRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGT 235 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T++ + ++ AL+G+++QQ R L ++ GR + +ATDVAARGID+ + LV+ Sbjct: 236 IDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVV 295 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFREANVSVVWEPAPS 374 + ++ + E+ +HR GRTGRAGR G + +FV P+ + R E L ++ V Sbjct: 296 NFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEVAIPNHEI 355 Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + A R + + L ++ + + D+ A D E++AA + Sbjct: 356 LMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 402 >gi|325474437|gb|EGC77624.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema denticola F0402] Length = 570 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 165/574 (28%), Positives = 268/574 (46%), Gaps = 31/574 (5%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 ++ +A+ +G+ T +Q + P L E +V+ A+TG+GKT AFGL L L + Sbjct: 13 IVLQAVEAKGFEEPTPIQ-VLAIPRLLSGEANVIAKARTGTGKTAAFGLPLVQELRSNTG 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + AL + PTRELAVQV ELE + +A GG ++ + R L+ G I Sbjct: 72 KVR------ALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSLKTGVEI 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DH+ L I ++ +LDEADEML++GF +DIE I + + R+LMFSA Sbjct: 126 VVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEARVLMFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I ++A ++ D V + + S + +V D+ A+V ++ Sbjct: 186 TMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVVREGDKTEALVRLIDTSPNFYG 245 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VFC T+ K L E ++ AL G++ Q +R L+ R + R+ +ATDVAARG Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 ID+ + V++ + + HR GRTGRAG G++V + N +R E L + A + Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRIEYLRKHARGEL 365 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-------MVDVLLAKHDPEKIAAGF 420 PS+E + E RIL++ + E+K + L D + + + Sbjct: 366 KEGKIPSIEQVIEIKRTRILKETAAQIEKRISEEKPEQGFAAFANKLTEYGDAQTVLSFI 425 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 L++ +P + V R + RA R + + S + VG K Sbjct: 426 LQMQYGSFLSPAHYKTIKPV------RSEGRA-------RKSDEDSLRLYIGVGRKDGIT 472 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG--G 538 R L ML R I + + I V + + + + R K +G+ ++ Sbjct: 473 KRKLAEMLSRLLSIPERLVDDIEVMDKFSLATMPKNAANDALRLCKKKRGLPHMHIDVKS 532 Query: 539 EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572 E P G G + + ++G ++ + ASK Sbjct: 533 EAPTNYGSIGKGKRGQKRKNGTQRKKEGLSSASK 566 >gi|218700063|ref|YP_002407692.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI39] gi|218370049|emb|CAR17825.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli IAI39] Length = 457 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 207/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + S I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTDALPS-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|138893877|ref|YP_001124330.1| DEAD-box ATP dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus thermodenitrificans NG80-2] Length = 467 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 146/444 (32%), Positives = 233/444 (52%), Gaps = 38/444 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ G+ T +Q + L+ KDV+ AQTG+GKT AFG+ + + +N Sbjct: 13 VMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVDVKNGVIQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL +APTRELA+QV EL + A V V GG + R+ R L+ H++VG Sbjct: 73 ------ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI L + H++ VVLDEADEML++GF +DIE IL P +R+ L+FSAT+ Sbjct: 127 TPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A+ + D V + ++ +I + V + + + +L + AIVF Sbjct: 187 DPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V + L + + G+LSQ +R + L+ ++G + +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359 + V + ++ +PE+ +HR GRTGRAG+ G+++ FV P+ + +R+ ER+ Sbjct: 307 SGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERM 366 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415 +P EA+ QRI + L L+ + + K+ + LL +HD Sbjct: 367 ----------KPPTLNEAL--EGQQRIAIEKL-LNVAEAENLSFYKRAAEELLEEHDSVT 413 Query: 416 IAAGFLRIHRAGLCAPEEITPVSL 439 I A L++ L + TPV L Sbjct: 414 IVAACLKM----LTREPDTTPVKL 433 >gi|209918588|ref|YP_002292672.1| ATP-dependent RNA helicase DbpA [Escherichia coli SE11] gi|218553903|ref|YP_002386816.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI1] gi|293433706|ref|ZP_06662134.1| ATP-independent RNA helicase DbpA [Escherichia coli B088] gi|209911847|dbj|BAG76921.1| ATP-dependent RNA helicase [Escherichia coli SE11] gi|218360671|emb|CAQ98232.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli IAI1] gi|291324525|gb|EFE63947.1| ATP-independent RNA helicase DbpA [Escherichia coli B088] gi|320199384|gb|EFW73975.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B] gi|323947687|gb|EGB43690.1| DEAD/DEAH box helicase [Escherichia coli H120] Length = 457 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSILPLEAE 381 >gi|8928554|sp|P33906|DEAD_KLEPN RecName: Full=Cold-shock DEAD box protein A; AltName: Full=ATP-dependent RNA helicase deaD Length = 643 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 174/564 (30%), Positives = 274/564 (48%), Gaps = 46/564 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 72 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248 AI + + + K+ V I S DI ++ A R N A+V L AI Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + + AL+G+++Q R AL+ ++DGR + IATDVAARG+ Sbjct: 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 310 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-H--------DPEKIAAG 419 P+ E + +R ++ ++ + LLAK H D E +AA Sbjct: 370 EVELPNAELLSKRRLEKFAAK--VQQQLESSDLDQYRALLAKIHATAEGEELDVETLAAA 427 Query: 420 FLRIHRA--GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---------------- 461 L++ + L P PV+ + R FRD +F G D Sbjct: 428 LLKMAQGERSLIVP----PVAPMRPRREFRDRDDSFDRRGDRNDRGPRGDREDRPKRERR 483 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517 + + + VG E R ++ + I+ + IG I++ + +E+ + Sbjct: 484 DVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 543 Query: 518 VDLLRRTVKLDKGIQLKYLGGEKP 541 + RT L+K + ++ LG +P Sbjct: 544 LQHFTRTRILNKPMNMQLLGDAQP 567 >gi|134292614|ref|YP_001116350.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4] gi|134135771|gb|ABO56885.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4] Length = 465 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 132/332 (39%), Positives = 191/332 (57%), Gaps = 8/332 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV++T +Q A L L D++ A+TGSGKT AF LAL S L A RF Sbjct: 22 LTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDAR--RFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAH+VVGTPG Sbjct: 78 --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHVVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIVKVARMCPATRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V +A E S I R V ++R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEVKLA-ERHDDSKIRQRFYEVTDTERLHAVGQLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 E VI+ +++ +PE +HR GRTGRA ++G ++ Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWAL 346 >gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599] gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599] Length = 546 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 129/350 (36%), Positives = 203/350 (58%), Gaps = 4/350 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AEN 66 P V+ +A++ GY T +Q + + DV+ +AQTG+GKT F L + + L+ + + Sbjct: 27 PDVL-KAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTAGFALPIINVLMPSAS 85 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 SPA P+ AL IAPTRELA Q+ ++ T + A GGV + + L+ G Sbjct: 86 HSASPARHPVRALIIAPTRELADQIHDNVKTYIQFTPLRSAAVFGGVDMQPQTNALRAGV 145 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF DI+ I++ +R+ LMF Sbjct: 146 EILIATPGRLLDHVQQKSVNLSQVQLLVLDEADRMLDMGFLPDIQRIINLLNPRRQNLMF 205 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT S I LAK + + + +A N +++ V D + +A+ ++R G Sbjct: 206 SATFSDEIRKLAKRFLNEPKLIEVARPNTLAENVEQTVYHVPSEDLKRDAVGALIRERGI 265 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF +T+ R + L + F A+ G+ SQQER L + G +V +ATDVA Sbjct: 266 EQVIVFSNTKIGAGRLARHLQKEGFLAEAIHGDKSQQERLKTLDGFKAGEIKVLVATDVA 325 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ARG+D+ +L VI+ +L +PE+ +HR GRTGRAG GM++ ++ + Q+ Sbjct: 326 ARGLDIAELPAVINYDLPHSPEDYVHRIGRTGRAGASGMALSLMVDHDQK 375 >gi|307564611|ref|ZP_07627147.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS 21A-A] gi|307346681|gb|EFN91982.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS 21A-A] Length = 613 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 146/423 (34%), Positives = 223/423 (52%), Gaps = 30/423 (7%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I +A+ E+G+ VQE ++ P L DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVSEDIRKAIEEQGFEYPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + + A+ ++PTREL +Q+ +L ++ + +A GG S+ Sbjct: 60 PLLQRI------DTSRKETQAIVLSPTRELCLQIADDLKDFSKYIPHLHIAAVYGGTSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + ++L+ G I+V TPGRL D + RGK + ++ +VLDEADEML++GF+D I IL Sbjct: 114 AQIKELKRGVQIIVATPGRLIDLMHRGKA-KLENVCNIVLDEADEMLNMGFQDSITEILS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P+ R L+FSAT+S + +AK Y D + + S N +++ +V D+ A Sbjct: 173 GVPEDRNTLLFSATMSKDVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAKDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + ++ ++ AIVFC T+ L + + AL G+LSQQ+R +Q R Sbjct: 233 LKRLVDFYPKIYAIVFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHL 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ +L VI+ L + EN HRSGRTGRAG+KG S+ +I + Sbjct: 293 TQILVATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSIAIIHCREKY 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414 + + R V PS A+ I + LF K M D+L D E Sbjct: 353 KVRNIERVIGKEFVDGTLPS--------AEEICKKQLF--------KTMSDILKTDVDEE 396 Query: 415 KIA 417 +IA Sbjct: 397 QIA 399 >gi|261749520|ref|YP_003257206.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497613|gb|ACX84063.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 542 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 156/511 (30%), Positives = 258/511 (50%), Gaps = 18/511 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I +AL + G T +Q+ ++ L+ KD++ AQTG+GKT AFGL + + E RF Sbjct: 14 IIQALEDLGIKTPTPIQKKVIPYLLKSGKDLIALAQTGTGKTAAFGLPIIQKINLEF-RF 72 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128 P AL + PTREL +Q+ R+L ++ + + GGVS+ + LQ HI+ Sbjct: 73 -----PQALILCPTRELCIQITRDLSRFSRYISLIKIIPLYGGVSIENQILSLQKRTHII 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ D I K L++S +K +VLDEADEML++GF+++++ I+ PKKR+ L+FSAT Sbjct: 128 VGTPGRIIDLIERKKLHLSDIKYLVLDEADEMLNMGFKEELDSIIIKLPKKRQSLLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 +S + +A +Y D + + N D+ + +V+ ++ A+ I+ + I Sbjct: 188 MSKYMNGIAHDYLIDPIEIITGKRNFASDDVRHIYYIVSNQNKYLALKRIVDINPDIYGI 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC TR + L + + AL G+LSQ +R + + R+ + +ATD+AARGI Sbjct: 248 IFCKTRKETREIAESLIQDGYNADALYGDLSQSQRESVMNRFRNRILQFLVATDIAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ D+ VI+ + E +HRSGRTGRAG G+SV +I R ++ S Sbjct: 308 DVNDVTHVINYNIPDESEIYVHRSGRTGRAGNTGISVCIIHSRETRNLREFEKKIGKSFE 367 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAKHDPEKIAAGFLR 422 PS E + E+ ++ + I DE+ M L L D E++ F Sbjct: 368 RIMIPSGEEVCEKKLFHFIEK---VKKIVVDEQSMKTFLPEIQKRLEVFDREELIKRFSW 424 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 I + + +L + ++ + A K R + S L++G K Sbjct: 425 IEFNRFFSYYK-NSKNLNNSIFSYKKNYSAKKKFLSKRVKKESFSKLFLNIGYKDNLTKL 483 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 L+ ++ ++ +R +IG I + + + EV Sbjct: 484 GLINLINQAVNNSRINIGNIEILSNFSLFEV 514 >gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271] gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271] Length = 527 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 70 -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 V AP+++ E QR++ + L +IQ + K++ + +L ++D + A L Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIQNENLSYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18] gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29] gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3] gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3] gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29] gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18] Length = 529 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTRKE----- 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 70 -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 V AP+++ E QR++ + L +I+ D K++ + +L ++D + A L Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|295702900|ref|YP_003595975.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] gi|294800559|gb|ADF37625.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] Length = 481 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 122/373 (32%), Positives = 202/373 (54%), Gaps = 6/373 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +ALS Y + T VQ +L L E+DV+V +QTGSGKT +FG+ L + E ++ Sbjct: 15 VAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCELVNWEENK-- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA QV ++ + + A G +++ +L+ HIVVG Sbjct: 73 ----PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQKTHIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + ++ +V+DEADEML++GF D +E I+ P +R ++FSAT+ Sbjct: 129 TPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTMLFSATLP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L++ Y K V V I + S ID+ + V + + ++ + I+F Sbjct: 189 EDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVISVGNERKFELLKDVTTVENPDSCIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V+ L + + + G + Q++R + + G+ R +ATDVAARGID+ Sbjct: 249 CRTQEQVNTLLDDLDDLGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ VI+ +L E+ +HR+GRTGRAG+KG ++ + +R + S+ Sbjct: 309 DNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEERMLSEIEEYIGFSIPTS 368 Query: 371 PAPSVEAIRERDA 383 PS E +++ ++ Sbjct: 369 TPPSKEEVQQAES 381 >gi|194290281|ref|YP_002006188.1| dead/deah box helicase/ATP-dependent RNA helicase [Cupriavidus taiwanensis LMG 19424] gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus taiwanensis LMG 19424] Length = 624 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 203/372 (54%), Gaps = 24/372 (6%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL----------- 58 I ALS+ Y T VQ + L +D+LVS+QTGSGKT AF L Sbjct: 59 AILRALSDLNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEMPAPQ 118 Query: 59 -----ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGG 111 A + + R +PA P L + PTRELA+QV E Y + +V A +GG Sbjct: 119 RATEPAKRMKGKRPRPAPAQ-PALLVLTPTRELALQV-TEAAAKYGRNLRRIVCASILGG 176 Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171 + ++ L I+V TPGRL DHI +++S L+ +V DEAD MLD+GF DDI+ Sbjct: 177 MPYPKQLAMLAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADDIDA 236 Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSD 230 I++++P R+ LMFSAT+ I LA KD R+ IA+ S I+ R +S Sbjct: 237 IVNATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHFTDDMSH 296 Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 ++ + ++LR K AIVF +T+ + L++ F AL G+++Q R+ L + Sbjct: 297 KERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTAL 356 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 R G RV +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ ++ Sbjct: 357 RRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNH 416 Query: 351 N---MQRRAERL 359 N RR ER Sbjct: 417 NDMFQWRRIERF 428 >gi|157156397|ref|YP_001462652.1| ATP-dependent RNA helicase DbpA [Escherichia coli E24377A] gi|193062707|ref|ZP_03043801.1| ATP-independent RNA helicase DbpA [Escherichia coli E22] gi|194426050|ref|ZP_03058606.1| ATP-independent RNA helicase DbpA [Escherichia coli B171] gi|260843691|ref|YP_003221469.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli O103:H2 str. 12009] gi|260855042|ref|YP_003228933.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli O26:H11 str. 11368] gi|260867791|ref|YP_003234193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli O111:H- str. 11128] gi|300822487|ref|ZP_07102626.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7] gi|300904996|ref|ZP_07122814.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1] gi|301305840|ref|ZP_07211925.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1] gi|331667742|ref|ZP_08368606.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271] gi|331677132|ref|ZP_08377828.1| ATP-independent RNA helicase DbpA [Escherichia coli H591] gi|157078427|gb|ABV18135.1| ATP-independent RNA helicase DbpA [Escherichia coli E24377A] gi|192931829|gb|EDV84429.1| ATP-independent RNA helicase DbpA [Escherichia coli E22] gi|194416105|gb|EDX32371.1| ATP-independent RNA helicase DbpA [Escherichia coli B171] gi|257753691|dbj|BAI25193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli O26:H11 str. 11368] gi|257758838|dbj|BAI30335.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli O103:H2 str. 12009] gi|257764147|dbj|BAI35642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli O111:H- str. 11128] gi|300403145|gb|EFJ86683.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1] gi|300524903|gb|EFK45972.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7] gi|300838930|gb|EFK66690.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1] gi|315254386|gb|EFU34354.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1] gi|323153565|gb|EFZ39816.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14] gi|323162444|gb|EFZ48296.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010] gi|323179693|gb|EFZ65254.1| ATP-independent RNA helicase dbpA [Escherichia coli 1180] gi|324117462|gb|EGC11368.1| DEAD/DEAH box helicase [Escherichia coli E1167] gi|331065327|gb|EGI37222.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271] gi|331075821|gb|EGI47119.1| ATP-independent RNA helicase DbpA [Escherichia coli H591] Length = 457 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888] gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 540 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 188/334 (56%), Gaps = 8/334 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GYVN T +Q A + L +DVL AQTG+GKT +F L + + L R A P +L Sbjct: 23 GYVNPTPIQAAAIPVALTGRDVLGIAQTGTGKTASFVLPMITRLETGRAR---ARMPRSL 79 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA QV + E + VA+ IGGVS+ + + L G +++ TPGRL DH Sbjct: 80 ILAPTRELAAQVAQSFEKYGTNHKLSVALLIGGVSMDDQVKKLDRGVDVLIATPGRLLDH 139 Query: 139 IRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 G+G + + ++ +V+DEAD MLD+GF DIE I P +R+ L FSAT+ P IT L Sbjct: 140 F-GRGRVMLMGVEILVIDEADRMLDMGFIPDIEKICKLLPPRRQTLFFSATMPPEITRLV 198 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVFCSTR 254 + KD R+ +A I R V + + + ++R KNAI+FC+ + Sbjct: 199 DQFLKDPTRIEVAKPATTAKTITQRFVYCQNGEDWAKREMLRELIRDGNVKNAIIFCNRK 258 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V+ K L++H F L G++ Q R+ L R+G + A+DVAARG+D+PD+ Sbjct: 259 RDVAVLYKSLSKHGFNAGELHGDMDQTSRTETLDKFRNGEIMLLAASDVAARGLDIPDVS 318 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V + +L ++ +HR GRTGRAGR+G S ++ Sbjct: 319 HVFNFDLPWAADDYVHRIGRTGRAGREGHSASLV 352 >gi|290473453|ref|YP_003466320.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004] gi|289172753|emb|CBJ79524.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004] Length = 662 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 198/369 (53%), Gaps = 7/369 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY + +Q+ + L +DVL AQTGSGKT AF L L + AE Sbjct: 21 ALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNIDAE------LK 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV E+ V V GG + R L+ G +VVGTP Sbjct: 75 APQILVLAPTRELAVQVAEACSEFSKQMRSVNVVALYGGQRYDVQLRALRQGPQVVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ L++S+LK +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 135 GRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + D V I S DI V ++ A+V L I+F Sbjct: 195 IRRITRRFMNDPQEVRIQSSVTTRPDISQSYWSVHGVRKNEALVRFLETEDFDATIIFVR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L H + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 255 TKNATLEVAETLERHGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 315 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVEL 374 Query: 373 PSVEAIRER 381 P+ E + +R Sbjct: 375 PNAELLSQR 383 >gi|171463843|ref|YP_001797956.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193381|gb|ACB44342.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 482 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 125/339 (36%), Positives = 196/339 (57%), Gaps = 6/339 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 ++E G+ T+VQ ++ L D+LV++QTGSGKT AF L L + L+ +N SP + Sbjct: 34 VAELGFTQATAVQAQVIPAALAGSDLLVNSQTGSGKTAAFLLPLINQLIEDNPNNSPVPS 93 Query: 75 ---PLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L + PTRELA QV + + + G+ +A +GG+ ++ + L+ GA +VV Sbjct: 94 RAQPKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMPYGKQIQALK-GALLVVA 152 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + + +K +V+DEAD MLD+GF DD+E I + + LMFSAT + Sbjct: 153 TPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAIDKRCAGRNQTLMFSATFA 212 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIV 249 P I +LA +A R+ +A +H++I+ + ++S + + +IL A+V Sbjct: 213 PKIMSLANELTTNAKRIELAHAGEKHANIEQKLHWADSMSHKHKLLEHILADADLDQAVV 272 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F ST+ + L + ++ AL G + Q R L+ +R GR ++ +ATDVAARGID Sbjct: 273 FASTQVESEKIADTLRANGYEATALHGAMPQAVRMRRLESLRKGRTKILVATDVAARGID 332 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P + VI+ L PE+ HR GRTGRAGR G+++ ++ Sbjct: 333 VPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLV 371 >gi|146284217|ref|YP_001174370.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501] gi|145572422|gb|ABP81528.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501] Length = 512 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 129/357 (36%), Positives = 198/357 (55%), Gaps = 8/357 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+AL L N R+ A Sbjct: 71 LEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLDPL---NPRYFGCQA 127 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +EL L A + + GGVS+ + L++GAH++VGTPG Sbjct: 128 ---LVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEHGAHVIVGTPG 184 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H++ L + L +VLDEAD MLD+GF D I I+ +P KR+ L+FSAT +I Sbjct: 185 RVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPAKRQTLLFSATYPASI 244 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA ++ + +V + S + S I+ R + R +A+ +L ++ + FC T Sbjct: 245 EQLAASFMRAPQQVRVESLH-TDSQIEQRFYEIDPEQRLDAVARLLASFRPESCVAFCFT 303 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L AL+G+L Q++R L M + V +ATDVAARG+D+ L Sbjct: 304 KQQCQELVEYLNGKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVATDVAARGLDIDAL 363 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++VI+ EL+ +PE +HR GRTGRAG +G++ ++ RA+ + + + W Sbjct: 364 DMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIEKLQKSPLNWH 420 >gi|296136685|ref|YP_003643927.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] gi|295796807|gb|ADG31597.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12] Length = 666 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 137/386 (35%), Positives = 216/386 (55%), Gaps = 13/386 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + +AL + GY + +Q A + P L +DVL AQTG+GKT AF L + + + N Sbjct: 14 LPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAKIDC-N 72 Query: 67 DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R + AL +APTRELA+QV + G V GG S + L+ GA Sbjct: 73 ARHT-----QALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLKRGA 127 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ DH+ L + L +VLDEADEML +GF DD+E IL +P +R++ +F Sbjct: 128 HVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVALF 187 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI +A+ Y +D + I + + I R +V+ + +A+ IL + Sbjct: 188 SATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEPFE 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + + LA F AL+G++ Q R +Q ++DG+ + +ATDVAA Sbjct: 248 GMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE 362 RG+D+ + V++ ++ ++ E+ +HR GRTGRAGR G ++ FV P +++ R ER R+ Sbjct: 308 RGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATRQ 367 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQ 388 + PS EA+ + R ++ Sbjct: 368 PITQMQL---PSTEAVNDSRISRFME 390 >gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621] gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621] Length = 519 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 134/427 (31%), Positives = 231/427 (54%), Gaps = 16/427 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + A + Sbjct: 2 GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE------AVQGI 55 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTPGR+ DH Sbjct: 56 VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDH 115 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ I +A+ Sbjct: 116 INRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAE 175 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + + + + ++ +I + V + + + +L + AI+F T+ V Sbjct: 176 RFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGRTKRRVD 235 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ + V + Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYN 295 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378 ++ +PE+ +HR GRTGRAG+KG+++ + + + + R V AP+++ Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMDAPTLDEA 355 Query: 379 RERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEI 434 E QR++ + L +I+ D K++ + +L ++D + A L++ + + Sbjct: 356 LE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAALKM----MTKEPDT 409 Query: 435 TPVSLVS 441 TP++L S Sbjct: 410 TPIALTS 416 >gi|168185061|ref|ZP_02619725.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf] gi|226949024|ref|YP_002804115.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str. Kyoto] gi|237795191|ref|YP_002862743.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str. 657] gi|182671882|gb|EDT83843.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf] gi|226843804|gb|ACO86470.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str. Kyoto] gi|229262477|gb|ACQ53510.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str. 657] Length = 481 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 126/378 (33%), Positives = 203/378 (53%), Gaps = 10/378 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN + I ++L GY N + VQ+ ++ L++KD++V ++TGSGKT AF + + Sbjct: 6 FENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65 Query: 62 L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + L E D P L + PTRELA+Q+ E+ + + G + ++R+ Sbjct: 66 IELEEKD-------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ H+VVGTPGR DHI + L++ +K VLDEADEML++GF D +E ++ PK R Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++FSATI I L K Y + +NI EN I+ V D+ + + I+ Sbjct: 179 VTMLFSATIPEKIENLCKKYMNNPQNININPENITTGTINQCYYEVEDKDKFSLLQKIIY 238 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 N+I+FC+TR V K + + F + L G + Q++R ++ + G + + Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQFLVC 298 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGI + ++ VI+ E+ E+ +HR GRTGRAG++G+++ I N R + + Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIE 358 Query: 361 REANVSVVWEPAPSVEAI 378 + PS+E + Sbjct: 359 DYIEKEIPKRKEPSLEEV 376 >gi|160888927|ref|ZP_02069930.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492] gi|270293944|ref|ZP_06200146.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20] gi|156861394|gb|EDO54825.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492] gi|270275411|gb|EFA21271.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20] Length = 425 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 129/344 (37%), Positives = 188/344 (54%), Gaps = 6/344 (1%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ + I +AL E GY T +QE + L+ KD+L AQTG+GKT AF + + Sbjct: 3 FENLNLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L ++R S AL + PTRELA+Q+G TG+ AV GGV + +L Sbjct: 63 LYKTDNRKSIK----ALILTPTRELAIQIGESFSAYGKYTGLRHAVIFGGVGQKPQTDEL 118 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I+V TPGRL D + +N+ L+ VLDEAD MLD+GF DI IL P KR+ Sbjct: 119 KRGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQ 178 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ P I TLA + +V + + I V ++ + ++++L+ Sbjct: 179 TLFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKN 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 K+ ++F T+ + + L++ + A+ G SQ R AL ++ RV IAT Sbjct: 239 PAIKSVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLIAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+AARGID+ L VI+ EL + PE +HR GRTGRAG G+++ Sbjct: 299 DIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIAL 342 >gi|126444520|ref|YP_001061297.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 668] gi|126224011|gb|ABN87516.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia pseudomallei 668] Length = 465 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + + A RF Sbjct: 23 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARIDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + RV + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + N R + + V W P Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375 Query: 374 SVEA 377 ++A Sbjct: 376 ELKA 379 >gi|282880561|ref|ZP_06289268.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis CRIS 5C-B1] gi|281305664|gb|EFA97717.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis CRIS 5C-B1] Length = 627 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 142/413 (34%), Positives = 223/413 (53%), Gaps = 15/413 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE + + I A+ E G+V+ VQE ++ L K DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 L L + D S + A+ ++PTREL +Q+ +L+ Y K + V GG S+ Sbjct: 61 L----LQKIDVASKHTQ--AIILSPTRELCLQIADDLKDFAKYIKN-LHVEPVYGGASIV 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + L++GA I+V TPGRL D + + H+ VVLDEADEML++GF + I IL Sbjct: 114 TQIHALKHGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAG 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P R L+FSAT+S I +AK Y +D + + S N ++++ +V D+ A+ Sbjct: 174 VPDDRNTLLFSATMSKEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYMVNARDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ AI+FC T+ L + + AL G+LSQQ+R +Q R Sbjct: 234 KRIVDYYPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVT 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ +L VI+ + + EN HRSGRTGRAG+KG S+ +I + + Sbjct: 294 QLLVATDVAARGLDVDELTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408 + + V P+ + I + + + D ++ I DE+++ ++ Sbjct: 354 VRAVEKIIGKEFVDGTLPTAQEICAKQLYKAMHD---IEKIDVDEEQIAPFMV 403 >gi|238791786|ref|ZP_04635423.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909] gi|238728890|gb|EEQ20407.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909] Length = 460 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 140/394 (35%), Positives = 211/394 (53%), Gaps = 18/394 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 19 LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPV 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ + V + + + I+ R ++++L ++ + +VFC Sbjct: 191 GIERISARVQRQPINVEV-DDGDEVPAIEQVFFETTREKRLPLLISVLSHYQPSSCVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DL LV++ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 310 DLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMS-RAHAIEDYLQIKLKWT 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 PA V R A +L+ + I G K + Sbjct: 369 PAEPV----SRSANAMLEPEMVTLCIDGGRKAKI 398 >gi|167584515|ref|ZP_02376903.1| ATP-dependent RNA helicase DbpA [Burkholderia ubonensis Bu] Length = 464 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 146/397 (36%), Positives = 211/397 (53%), Gaps = 15/397 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 22 LAQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPG Sbjct: 78 --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIVVGTPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 136 RIMDHLDRGTLALDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V +A E S I R V +R +A+ +L ++ + I FC+T Sbjct: 196 AKLSQQFLRNPKEVKLA-ERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + + R + + V W P Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGCIEQALKREVEWHPLA 374 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407 ++A DA L P+ I G K + DVL Sbjct: 375 ELKA----DASEPLLPPMETLQILGGRKDKIRPGDVL 407 >gi|289677204|ref|ZP_06498094.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 379 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 15/368 (4%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLALAIAPTRELAVQVGRELEWL 97 D++ AQTG+GKT AF L + R P+ P AL +APTRELA+QV E Sbjct: 12 DMIGQAQTGTGKTAAFALPILH-------RIDPSKREPQALILAPTRELALQVATAFET- 63 Query: 98 YAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155 YAK GV V GG + + + ++NGA IVV TPGRLCDH+R ++ + +VLD Sbjct: 64 YAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLD 123 Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215 EADEML LGF DD+E I + P+ ++ ++FSAT+ +I +A+ + +D V I ++ + Sbjct: 124 EADEMLKLGFMDDLEVIFKAMPETKQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQT 183 Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275 + I+ +LV + +A++++L I+F T+ + L ++ AL+ Sbjct: 184 VTAIEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALN 243 Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335 G+++Q +R ++ ++DGR + +ATDVAARG+D+P + V + ++ +PE+ +HR GRT Sbjct: 244 GDIAQNQRERVIESLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRT 303 Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFL 393 GRAGR+G ++ ++ +R + + R V P +A+ + +++ PL Sbjct: 304 GRAGREGRALLLVTPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVA 363 Query: 394 D--SIQGD 399 D S GD Sbjct: 364 DAESTHGD 371 >gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12] gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12] Length = 503 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 194/354 (54%), Gaps = 10/354 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K E P+++ +++ G+ T +Q + L KDV+ AQTG+GKT AFGL + Sbjct: 3 FKELELSPELL-KSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML- 60 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 ++ P L L IAPTRELA+Q EL L V V GG + R+ R Sbjct: 61 ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ HIVVGTPGR+ DHI L + ++ +VLDEADEML++GF +DIE I+ P + Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIIFQVPDQ 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ PAI + + K V I ++ ID V ++ + + + Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVF T+ V + L ++ + G+LSQQ+R + L+ + G + + Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348 >gi|227886220|ref|ZP_04004025.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972] gi|227836424|gb|EEJ46890.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972] gi|307553405|gb|ADN46180.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972] Length = 457 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 LPANSSIVPLEAE 381 >gi|82544201|ref|YP_408148.1| ATP-dependent RNA helicase DbpA [Shigella boydii Sb227] gi|81245612|gb|ABB66320.1| ATP-dependent RNA helicase [Shigella boydii Sb227] gi|320174309|gb|EFW49464.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112] gi|332094952|gb|EGI99992.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74] Length = 457 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAVISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001] gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001] Length = 610 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 156/534 (29%), Positives = 270/534 (50%), Gaps = 56/534 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ EAL+ GY + +Q+A + + +D++ AQTG+GKT AF L L + L AE Sbjct: 58 PEIL-EALAAIGYSEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAGLDAEQR 116 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 + P L +APTRELA+QV A+ V V + GG + L+ GA Sbjct: 117 K------PQVLVLAPTRELALQVAESFNSYAAQLPQVRTVAVYGGADFRDQIHHLRRGAQ 170 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+R L++S L+++VLDEADEML +GF DD+E++L P++R++++FS Sbjct: 171 VVVGTPGRVMDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVLGQLPEQRQVVLFS 230 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I +++ Y + I ++ S I R + V + A+ +L ++ Sbjct: 231 ATMPAEIRRISQQYLNGPAEITIRTKAADASRIRQRFLTVPAPLKLAALERVLESETSEG 290 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+A + L H + V L+G++ Q +R ++ +++G+ V +ATDVAAR Sbjct: 291 VIIFARTKAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKNGQVDVLVATDVAAR 350 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ + LVI+ ++ + E +HR GRTGRAGR G ++ + +R L R A Sbjct: 351 GLDVERIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFLTPRERRFLGGLERAAGKP 410 Query: 367 VVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 + PS I + R+ L + L ++ +E+ ++ ++ R+ Sbjct: 411 IEPMEVPSNATINQNRLDRLRQRLTNALHKSAVSPEEQALLSEIVQ------------RV 458 Query: 424 HRAGLCAPEEITPVS----------LVSGRDRF---------RDDSRAFKVGG--GSRDN 462 + C PE++ + L+ G D F R D R + G G+R+ Sbjct: 459 AQEQTCTPEQLALAALELSLGGKPLLLHGNDDFTQVRSQGPNRRDGRESRDGRDFGNREP 518 Query: 463 FKGSSW------------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504 +G S F + +G + + + L+ + +G+ ++IG I++ Sbjct: 519 RRGRSERPVGAPEPDMERFRVELGWRDRIKPGNLVGAIANETGLQGRAIGRIQI 572 >gi|83645104|ref|YP_433539.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396] gi|83633147|gb|ABC29114.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396] Length = 393 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 205/358 (57%), Gaps = 15/358 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LAST 61 N+ + +A+ + + T +Q L L+ D++ AQTG+GKT AF + L S Sbjct: 18 NLHPKLEQAIRDLNFERCTPIQGQTLPHTLQGADLIGQAQTGTGKTAAFLITILQRLVSN 77 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +RFS S P AL +APTRELA+Q+ ++ L + + IGG + R+RR L Sbjct: 78 PILTEERFS--SEPRALVVAPTRELALQIEKDACALAKHLKLNIISVIGGTQLDRQRRKL 135 Query: 122 QNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++ A +++ TPGRL DH+ + + ++ +VLDEAD MLD+GF D++ I+ ++P++R Sbjct: 136 RDEAVDLLIATPGRLLDHLTSADIYLDQVEVLVLDEADRMLDMGFIPDVKRIVRATPRER 195 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT S I LA+ + ++ V V +A ++ +D R +V S + +VN+L+ Sbjct: 196 QTLLFSATFSEDIKNLARRWTEEPVEVMLAVDHLPAKTVDQRVYMVESSAKRKLLVNLLK 255 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + IVFC+ R ++ L H + +SGEL QQ+R L+ R G RV +A Sbjct: 256 DSETRRVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLKTLERFRRGDFRVLVA 315 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350 TDVA RG+ + + V++ L +PE+ +HR GRTGRAG G+S+ F+IP+ Sbjct: 316 TDVAGRGLHIDGVTHVVNYNLPDDPEDYVHRIGRTGRAGATGVSISFACEDDSFLIPE 373 >gi|209771328|gb|ACI83976.1| ATP-dependent RNA helicase [Escherichia coli] gi|320642613|gb|EFX11861.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. 493-89] gi|320647966|gb|EFX16674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H 2687] Length = 457 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVTLEAE 381 >gi|218689333|ref|YP_002397545.1| ATP-dependent RNA helicase DbpA [Escherichia coli ED1a] gi|218426897|emb|CAR07752.2| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli ED1a] Length = 457 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEINSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 LPANSSIVPLEAE 381 >gi|15639757|ref|NP_219207.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str. Nichols] gi|3323078|gb|AAC65738.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str. Nichols] Length = 649 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 199/376 (52%), Gaps = 9/376 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A+ +G+ T +Q A + P L D ++ A+TG+GKT AFGL L L SP Sbjct: 60 AVRLKGFRCPTPIQAAAI-PRLLAGDANIIAKARTGTGKTAAFGLPLIQEL------GSP 112 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL + PTRELA QV EL L + + GGVS+ + R+L+ G I+VGT Sbjct: 113 CEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGEIIVGT 172 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GR+ DHI L +S+L+ +LDEADEML++GF +DIE I + K R+LMFSAT+ Sbjct: 173 TGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPR 232 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++A + V + I+ +V +D+ A+V ++ +VFC Sbjct: 233 QILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFC 292 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A K L E + V AL G++ Q +R L+ R RAR+ +ATDVAARGID+ Sbjct: 293 QTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIE 352 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ + + HR GRTGRAG +G+++ + + RR E L + N + Sbjct: 353 GITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHCNGELKAST 412 Query: 372 APSVEAIRERDAQRIL 387 P VE I + RI Sbjct: 413 VPLVEHILTQKEGRIF 428 >gi|153005404|ref|YP_001379729.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028977|gb|ABS26745.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. Fw109-5] Length = 680 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 188/338 (55%), Gaps = 11/338 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T VQ + P KDV+V ++TG+GKT AF + + + R Sbjct: 34 AIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPILERIADGRRR----- 88 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA+QV +E L + V GG S+ + + L+ GA I+VGTPG Sbjct: 89 -PSALVMCPTRELAIQVAQEFTALAKHRDLSVVAVYGGASMGEQLQKLEAGAEIIVGTPG 147 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHIR + L + LDEADEML++GF +++ ILD+ PK + L+FSAT+ I Sbjct: 148 RIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQLLFSATVPADI 207 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + ++Y D + ++ + +I Y AV R+ ++ ++ + AIVF Sbjct: 208 EQIIRDYLTDPETILLSGDEYSVENIHNVMYPAVDAYPKPRN--LLYMIEMEEPETAIVF 265 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR S VL + + L+G+L Q+ER + ++ G R +ATD+AARGID+ Sbjct: 266 CNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATDIAARGIDI 325 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DL VI+ L +P LHR GRTGR G+KG S+ ++ Sbjct: 326 SDLTHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSIV 363 >gi|168180353|ref|ZP_02615017.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916] gi|182668688|gb|EDT80666.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916] Length = 481 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 126/378 (33%), Positives = 203/378 (53%), Gaps = 10/378 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN + I ++L GY N + VQ+ ++ L++KD++V ++TGSGKT AF + + Sbjct: 6 FENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65 Query: 62 L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + L E D P L + PTRELA+Q+ E+ + + G + ++R+ Sbjct: 66 IELEEKD-------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ H+VVGTPGR DHI + L++ +K VLDEADEML++GF D +E ++ PK R Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++FSATI I L K Y + +NI EN I+ V D+ + + I+ Sbjct: 179 VTMLFSATIPEKIENLCKKYMNNPQNININPENITTGTINQCYYEVEDKDKFSLLQKIIY 238 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 N+I+FC+TR V K + + F + L G + Q++R ++ + G + + Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQFLVC 298 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGI + ++ VI+ E+ E+ +HR GRTGRAG++G+++ I N R + + Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIE 358 Query: 361 REANVSVVWEPAPSVEAI 378 + PS+E + Sbjct: 359 DYIEKEIPKRKEPSLEEV 376 >gi|257457389|ref|ZP_05622560.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580] gi|257445311|gb|EEV20383.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580] Length = 646 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 146/428 (34%), Positives = 220/428 (51%), Gaps = 27/428 (6%) Query: 14 ALSERGYVNLTSVQ----EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 A++ +G+ T +Q +LN D +V+ A+TG+GKT A+GL L L Sbjct: 32 AVAAKGFEEPTPIQVLAIPRLLNGD---ANVIAKARTGTGKTAAYGLPLVQELR------ 82 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P P AL + PTRELA+QV E+E T + GG S+ + R+L+ G IV Sbjct: 83 EPREKPRALVLVPTRELALQVASEIESFKEGTHPRITTVYGGASIVEQLRNLKRGCEIVA 142 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ LN+ ++ +LDEADEML++GF +DIE I + R+LMFSAT+ Sbjct: 143 GTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSRVLMFSATM 202 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +A ++ + V + + +V D+ A+V ++ +V Sbjct: 203 PKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLIDTAENFYGLV 262 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ K L E ++ AL G++ Q +R L R G+ R+ +ATDVAARGID Sbjct: 263 FCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILVATDVAARGID 322 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + V++ + + HR GRTGRAG KG +V I N +RR + L R A ++ Sbjct: 323 IEGITHVVNYSIPYDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRIDYLRRHARGELLE 382 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK----IAAGFLRIHR 425 PS+E + AQ+ QD LF D ++ +D + A+H K +A L ++ Sbjct: 383 GKIPSIEKVL---AQK--QDRLF-----SDLRRQLDTVQAEHTVNKSFIELARELLAGNK 432 Query: 426 AGLCAPEE 433 A L A EE Sbjct: 433 ASLAATEE 440 >gi|306813632|ref|ZP_07447813.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101] gi|222033147|emb|CAP75887.1| ATP-independent RNA helicase dbpA [Escherichia coli LF82] gi|305852906|gb|EFM53351.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101] gi|312945979|gb|ADR26806.1| ATP-dependent RNA helicase DbpA [Escherichia coli O83:H1 str. NRG 857C] Length = 457 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + + F Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DVSLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDALNEVGHSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|26247679|ref|NP_753719.1| ATP-dependent RNA helicase DbpA [Escherichia coli CFT073] gi|26108081|gb|AAN80281.1|AE016760_140 ATP-independent RNA helicase dbpA [Escherichia coli CFT073] Length = 457 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 LPANSSIVPLEAE 381 >gi|86133373|ref|ZP_01051955.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] gi|85820236|gb|EAQ41383.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] Length = 606 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 169/588 (28%), Positives = 291/588 (49%), Gaps = 48/588 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 I +AL++ GY T +QE + P + + D+ AQTG+GKT AF L + L +N+ Sbjct: 13 IIKALTDLGYEKPTVIQEKAI-PQIISSDTDLKAFAQTGTGKTAAFSLPILELLEEDNNN 71 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A+ ++PTRELAVQ+G ++ Y K V V GG S+ + R L+ G+ Sbjct: 72 VQ------AIILSPTRELAVQIGNNIKDFCKYLKN-VKVTTVYGGSSMEDQIRSLKKGSQ 124 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVVGTPGR D I + L + +++ +VLDEADEML++GF+++++ +L+++P+ ++ L+FS Sbjct: 125 IVVGTPGRTVDLINRRALKLGNVRWLVLDEADEMLNMGFKEELDKVLEATPETKQTLLFS 184 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT + +A+NY V V +N ++ + V R A+ I + Sbjct: 185 ATFPREVEAIARNYMTTPVEVTSGEKNSGSENVSHEYYAVTERTRYPALKRIADLNPDIY 244 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+FC TR L + + +L G+LSQ +R + + R ++ +ATDVAAR Sbjct: 245 AIIFCRTRRETQEVADNLIKDGYNADSLHGDLSQAQRDSVMGKFRKKTIQILVATDVAAR 304 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ +L VI+ +L EN HRSGRTGRAG KG+S+ ++ + + + R Sbjct: 305 GLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNKGVSIVLVNNREKGKLRVIERIIKQK 364 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAKHDPEKIAAGF 420 V P+ + I E ++ ++ + +E ++ + L L D E++ F Sbjct: 365 FVEGKVPTGKEIVENQLMNLIDK---VNDTKVNESEIKEFLPSIYDKLKDLDREELIQKF 421 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 + + + A E + D R++SRA + DN + F +++G K Sbjct: 422 VSLEFNTMLAYYENSK----DLNDLGRENSRA----RATADNM---TRFFINIGRKDSLN 470 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV------------SADGVDLLRRTVKLD 528 L+ ++ + ++ IGAI + +F E+ +++ D R+V ++ Sbjct: 471 PAKLIGLINDQNIGDKIEIGAIDILDTFSFFEIDKNFESETLDAFASNQPDFDGRSVNVE 530 Query: 529 KGIQLKYLG---GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573 + + G G+K F G K GF + S +G++ R G +N Sbjct: 531 ITKKERSGGGRRGKKKSF-GKKDGGFGRRRSAEGSSSRRSSDNGGGRN 577 >gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus HTCC2516] gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus HTCC2516] Length = 406 Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 192/346 (55%), Gaps = 6/346 (1%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FEN+ P++ L+E+G T +Q + L +DVL AQTG+GKT AFGL L Sbjct: 3 FENLGLSPRLAAR-LAEQGLTAPTPIQTQAIPHALEGRDVLGLAQTGTGKTAAFGLPLIQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERR 119 L A +P + LAL +APTRELA Q+ L G + + +GG S++ + Sbjct: 62 ALTAAGTHAAPNTV-LALILAPTRELAAQIVDSLRAFAGNGGSPRIGLVVGGKSINAQAN 120 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G I+V TPGRL D + K L + + +VLDEAD+MLDLGF + I PK+ Sbjct: 121 ALRRGTDILVATPGRLIDLLDRKALTLGKARYLVLDEADQMLDLGFIHALRRIAPLLPKE 180 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ ++FSAT+ ++ +A Y D VRV ++ + +D VA + ++++L Sbjct: 181 RQTMLFSATMPKQMSEIAGAYLTDPVRVQVSPPGKPADKVDQSVHFVAKDAKQALLIDLL 240 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 H + A+VF T+ R K L F ++ G SQ +R+ AL R+G+ RV + Sbjct: 241 DAHRDERALVFARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALDGFREGKVRVLV 300 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARGID+P + V + EL + PEN +HR GRT RAG G +V Sbjct: 301 ATDVAARGIDIPGVGYVYNYELPNVPENYVHRIGRTARAGADGRAV 346 >gi|331657397|ref|ZP_08358359.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206] gi|331055645|gb|EGI27654.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206] Length = 457 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +TSVQ A L L KDV V A+TGSGKT AFGL L + + F Sbjct: 18 LNELGYLTMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DVSLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --GLVLCPTRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|304408310|ref|ZP_07389958.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] gi|304342779|gb|EFM08625.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] Length = 482 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 194/348 (55%), Gaps = 7/348 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 IG AL + T VQ ++ L+ +D++V +QTGSGKT A+G+ L + E ++ Sbjct: 15 IGRALEGLAFNEPTEVQREVIPVVLQGRDIVVKSQTGSGKTAAYGIPLCELVSWEENK-- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L + PTRELAVQV +L + V A G H ++ +L+ HIV G Sbjct: 73 ----PQVLILTPTRELAVQVKEDLTNIGRFKRVKAAAIYGKQPFHIQKLELKQKTHIVAG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI +S L +V+DEADEML++GF D +E I+ P +R ++FSAT+ Sbjct: 129 TPGRVLDHIEKGTFPLSKLAYLVIDEADEMLNMGFIDQVEAIIKRLPAERVTMLFSATLP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L +NY +D V V I + I++ + V+ +D+ + +I + I+F Sbjct: 189 EDVDQLRRNYMRDPVSVEIQATGLTTDAIEHAQIKVSEADKLELLQSITIVENPDSCIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V+ + LA + + G ++Q+ER + R G+ R IATDVAARGID+ Sbjct: 249 CRTQEGVNELFRKLARLEYPCDRIHGGMAQEERLEVMGAFRRGQFRYLIATDVAARGIDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357 ++ VI+ + + E +HR+GRTGRAG++G ++ FV P + R AE Sbjct: 309 DNITHVINYDFPLDKEGYVHRTGRTGRAGKRGQAITFVTPSDEGRLAE 356 >gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12J] gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J] Length = 493 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 130/343 (37%), Positives = 194/343 (56%), Gaps = 12/343 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72 AL+E GY T +Q A + DV+ +AQTG+GKT F L + LL + N SPA Sbjct: 27 ALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIHNLLPDANTSASPA 86 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA QV + T + AV GGV ++ + L+ G I+V T Sbjct: 87 RHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVAT 146 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ + +N+S ++ +VLDEAD MLD+GF D++ I++ P R+ L+FSAT SP Sbjct: 147 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSP 206 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHG----AK 245 I LA +Y + + +A N ++ R V+ + D + A+V++LR + Sbjct: 207 EIKRLAASYLRHPQTIEVARSNATAENV--RQVIYTVPDNHKQAALVHLLRQRAEQGLPR 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF +++ SR + L A+ G+ +Q ER L+ + G V +ATDVAA Sbjct: 265 QCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDVAA 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 RG+D+ + VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 325 RGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 367 >gi|251791029|ref|YP_003005750.1| ATP-dependent RNA helicase DeaD [Dickeya zeae Ech1591] gi|247539650|gb|ACT08271.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591] Length = 624 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 144/424 (33%), Positives = 219/424 (51%), Gaps = 23/424 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ALSE GY + +Q + L +DVL AQTGSGKT AF L L + + A+ Sbjct: 17 ILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNIKAD----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV E+ GV V GG + R L+ G +VV Sbjct: 72 -LKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQGPQVVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + D V I S DI V ++ A++ L AI+ Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419 P+ E + +R A ++ Q ++ + M LL K P E +AA Sbjct: 371 VDLPNAELLGQRRLAKFAAKVQQ------QLESSDLDMYRALLGKLQPQEELDIETLAAA 424 Query: 420 FLRI 423 L++ Sbjct: 425 LLKM 428 >gi|153940796|ref|YP_001391035.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str. Langeland] gi|152936692|gb|ABS42190.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str. Langeland] gi|295319091|gb|ADF99468.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str. 230613] Length = 481 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 196/354 (55%), Gaps = 10/354 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN + I ++L + GY N + VQ+ ++ L++KD++V ++TGSGKT AF + + Sbjct: 6 FENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVCEK 65 Query: 62 L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L L E D P L + PTRELA+Q+ E+ + + G + ++R+ Sbjct: 66 LELEEKD-------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ H+VVGTPGR DHI + L++ +K VLDEADEML++GF D +E ++ PK R Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++FSATI I L K Y + +NI EN I+ V D+ + + I+ Sbjct: 179 VTMLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIY 238 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 N+I+FC+TR V K + + V L G + Q++R ++ ++G + + Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLVC 298 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 TDVAARGI + ++ VI+ E+ E+ +HR GRTGRAG++G+++ I N R Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVR 352 >gi|152993022|ref|YP_001358743.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1] gi|151424883|dbj|BAF72386.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp. NBC37-1] Length = 460 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 122/328 (37%), Positives = 182/328 (55%), Gaps = 10/328 (3%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 KD++ A TG+GKT AFGL + D+ + AL I PTRELA QV EL L Sbjct: 39 KDLVGQAHTGTGKTAAFGLPMM-------DKLAKGEIERALVITPTRELATQVADELYHL 91 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 G+ GGV R+ + G IVV TPGRL D R +++ + + VVLDEA Sbjct: 92 GRFAGIRTLTVYGGVGYGRQIALIHKGVQIVVATPGRLKDLYRKGKIDVLNPEIVVLDEA 151 Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQ 215 DEMLD+GF D+I+ I + P+ R+ L+FSAT+ I LA + YQ + + V + E Sbjct: 152 DEMLDMGFLDEIKEIFEYIPQNRQTLLFSATMPEPIKELANHILYQPEFISV-VGDEETT 210 Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275 ++ I+ R ++ + RD AIV +L I+FC + V R T+ L F L Sbjct: 211 NNIIEQRYYVINENQRDEAIVKLLETEDTNKCIIFCRMKREVDRLTEYLQAQGFNASGLH 270 Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335 G+L QQ+R ++ R G ++ +ATDVAARG+D+ D+ V + + +P++ +HR GRT Sbjct: 271 GDLEQQDREVVIKAYRRGETKIMVATDVAARGLDVKDVTHVFNYHIPFDPQSYVHRIGRT 330 Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREA 363 GRAG+ G ++ ++ R +R+ +E Sbjct: 331 GRAGKSGQAITLVTTEEFRELQRIQKEV 358 >gi|189025995|ref|YP_001933767.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum SS14] gi|189018570|gb|ACD71188.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum SS14] Length = 649 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 199/376 (52%), Gaps = 9/376 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A+ +G+ T +Q A + P L D ++ A+TG+GKT AFGL L L SP Sbjct: 60 AVRLKGFRCPTPIQAAAI-PRLLAGDANIIAKARTGTGKTAAFGLPLIQEL------GSP 112 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL + PTRELA QV EL L + + GGVS+ + R+L+ G I+VGT Sbjct: 113 CEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGEIIVGT 172 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GR+ DHI L +S+L+ +LDEADEML++GF +DIE I + K R+LMFSAT+ Sbjct: 173 TGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPR 232 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++A + V + I+ +V +D+ A+V ++ +VFC Sbjct: 233 QILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFC 292 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A K L E + V AL G++ Q +R L+ R RAR+ +ATDVAARGID+ Sbjct: 293 QTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIE 352 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ + + HR GRTGRAG +G+++ + + RR E L + N + Sbjct: 353 GITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHCNGELKAST 412 Query: 372 APSVEAIRERDAQRIL 387 P VE I + RI Sbjct: 413 VPLVEHILTQKEGRIF 428 >gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum Z-7303] Length = 431 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 188/337 (55%), Gaps = 6/337 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +A+ + GY T +Q + ++ +DV+ AQTG+GKT AFG+ L + Sbjct: 10 NLSRDIEKAIEDLGYEEPTPIQARSIPYIMQGRDVIGQAQTGTGKTAAFGIPA----LEK 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 DR S + L PTRELA QV EL L + V GG + R+ + L GA Sbjct: 66 VDRNSKKVQTIVLC--PTRELANQVADELNKLARYKKIKVLPIYGGQPIERQIKALNKGA 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+GTPGR+ DH+ L++ ++K VLDEADEMLD+GFR+DIE IL P KR+ +F Sbjct: 124 QIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLDMGFREDIELILSKLPDKRQTTLF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + K YQ + + + ++ V + A+ + ++ K Sbjct: 184 SATMPGPIMKMTKKYQDNPELIKTVHKKLTVPQVEQTYFEVKERSKPEALCRLTDFYNIK 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++VFC+T+ V + L + L G++ Q++R + ++G +ATDVAA Sbjct: 244 SSLVFCNTKKGVDNLVETLKTRGYLADGLHGDMKQKQRDKVMSNFKNGEIETLVATDVAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 RGID+ ++E+V + ++ + E+ +HR GRTGRAG++G Sbjct: 304 RGIDVENIEVVFNYDVPQDEESYVHRIGRTGRAGKQG 340 >gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16] gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16] Length = 646 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 204/373 (54%), Gaps = 21/373 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------------- 58 ALSE Y T VQ + L +D+LVS+QTGSGKT AF L Sbjct: 72 ALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEMPAPQRATE 131 Query: 59 -ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115 A + + R SPA P L + PTRELA+QV E Y + +V A +GG+ Sbjct: 132 PAKRMKGKRPRPSPAQ-PALLVLTPTRELALQV-TEAAAKYGRNLRRIVCASILGGMPYP 189 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 ++ L I+V TPGRL DHI +++S L+ +V DEAD MLD+GF DDI+ I+++ Sbjct: 190 KQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADDIDAIVNA 249 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNA 234 +P R+ LMFSAT+ I LA +D R+ IA+ S I+ R +S ++ Sbjct: 250 TPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQRLHFTDDMSHKERL 309 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + ++LR K AIVF +T+ + L++ F AL G+++Q R+ L +R G Sbjct: 310 LDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGN 369 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 RV +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G ++ ++ N Sbjct: 370 LRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGTAINLVNHNDMF 429 Query: 355 RAERLFREANVSV 367 + +R+ R N + Sbjct: 430 QWKRIERFTNQRI 442 >gi|160899925|ref|YP_001565507.1| DEAD/DEAH box helicase domain-containing protein [Delftia acidovorans SPH-1] gi|160365509|gb|ABX37122.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1] Length = 481 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 203/360 (56%), Gaps = 12/360 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY+ +T++Q A L P L KDV+ A+TGSGKT AF LAL + L N FS Sbjct: 39 LERLGYLEMTAIQLASLPPALEGKDVIAQAKTGSGKTAAFALALLAKLDTRN--FSVQ-- 94 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV E+ L A+ V V GGV + + L+NGAH++VGTPG Sbjct: 95 --GLVLCPTRELADQVTTEIRRLARAEDNVKVVTLSGGVPLRGQNASLENGAHVIVGTPG 152 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ LN+ L +VLDEAD MLD+GF DDI + P +R+ L+FSAT I Sbjct: 153 RVIDHLDRGNLNLDSLNTLVLDEADRMLDMGFVDDIAKVAKQCPPQRQTLLFSATYPEGI 212 Query: 194 TTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA + +D V V +A+ QHS I+ R V +R ++ +L + ++ + FC Sbjct: 213 AKLAARFMRDPVTVKVAA---QHSGEQIEQRWYEVDKEERLPSVARLLEHFRPESTLAFC 269 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+A ++L + + L G+L Q++R L +G V +ATDVAARG+D+ Sbjct: 270 NTKARCRALAELLQAQGYSALELHGDLEQRDRDQVLVRFVNGSCSVLVATDVAARGLDVT 329 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +L VI+ +++ +PE +HR GRTGRAG+KG+++ + + + + VW P Sbjct: 330 NLGAVINVDITPDPEVHVHRIGRTGRAGQKGLALSLATMDEMGAVGNIEQMQGSPSVWYP 389 >gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12D] gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D] Length = 493 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 129/343 (37%), Positives = 195/343 (56%), Gaps = 12/343 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72 AL+E GY T +Q A + +DV+ +AQTG+GKT F L + LL + N SPA Sbjct: 27 ALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFSLPIIHNLLPDANTSASPA 86 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA QV + T + AV GGV ++ + L+ G I+V T Sbjct: 87 RHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVAT 146 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ + +N+S ++ +VLDEAD MLD+GF D++ I++ P R+ L+FSAT SP Sbjct: 147 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSP 206 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHG----AK 245 I LA +Y + + +A N ++ R V+ + D + A+V++L+ + Sbjct: 207 EIKKLAASYLRHPQTIEVARSNATAENV--RQVIYTVPDNHKQAALVHLLKQRAEQGLPR 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF +++ SR + L A+ G+ +Q ER L+ + G V +ATDVAA Sbjct: 265 QCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDVAA 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 RG+D+ + VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 325 RGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 367 >gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956] gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956] Length = 492 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 12/413 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +QE + L KDV+ AQTG+GKT AFGL + EN Sbjct: 14 KAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEHVDVEN------ 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A L I+PTRELA+Q EL L + V V V GG + R+ R L+ I+VGTP Sbjct: 68 PAIQTLIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNPQILVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R +++S ++ +VLDEADEML++GF +DIE I+ +P +R+ L+FSAT+ P Sbjct: 128 GRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFSATMPPE 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + D V I ++ +D V ++ + + ++ IVF Sbjct: 188 IKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q RS ++ ++G + +ATDVAARG+D+ Sbjct: 248 TKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369 + V + ++ S+P++ +HR GRTGRAG G+S+ FV P M E+L R + + Sbjct: 308 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRARMLPL-- 365 Query: 370 EPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 +P EA R + A D L D + LL K+D ++ A L Sbjct: 366 KPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALL 418 >gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1] gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1] Length = 634 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 201/354 (56%), Gaps = 10/354 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L KD L AQTG+GKT AF L L + L + + Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLNLDQRK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAHIVVGTP Sbjct: 75 -PQAVVLAPTRELAIQVAAEMKNLGQNINGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P Sbjct: 134 GRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPETAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + ++ V++A +N ++ + +V ++D A+ +L +IVF Sbjct: 194 LKKIVDRFLREPEYVDVAGKNHTVDKVEQQFWVVKGVEKDEAMARLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367 >gi|94311500|ref|YP_584710.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans CH34] gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34] Length = 634 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 145/387 (37%), Positives = 210/387 (54%), Gaps = 27/387 (6%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL----------- 58 I AL+E Y T VQ + L +D+LVS+QTGSGKT AF L Sbjct: 59 AILRALAEANYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEKPATH 118 Query: 59 -----ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGG 111 A + + R SPA P L + PTRELA+QV E Y + +V A +GG Sbjct: 119 RPTEPAKRMKGKRPRPSPAQ-PSLLVLTPTRELALQV-TEAAAKYGRHLRRIVCASILGG 176 Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171 + ++ L I+V TPGRL DHI +++S L+ +V DEAD MLD+GF DDI+ Sbjct: 177 MPYPKQLAMLARMPDILVATPGRLLDHIEAGRIDLSALEMLVFDEADRMLDMGFADDIDA 236 Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSD 230 I+ ++P R+ LMFSAT+ I LA +D R+ IA+ HS+I+ R +S Sbjct: 237 IVAATPASRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADHSNIEQRLHFTDDMSH 296 Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 ++ + ++LR K AIVF +T+ + L++ F AL G+++Q R+ L + Sbjct: 297 KERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTAL 356 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 R G RV +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ ++ Sbjct: 357 RRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNH 416 Query: 351 N---MQRRAERLFR---EANVSVVWEP 371 RR ER +A+V +EP Sbjct: 417 GDMFQWRRIERFTNNRIDASVIEGFEP 443 >gi|291060131|gb|ADD72866.1| dead-box ATP-dependent rna helicase ydbr [Treponema pallidum subsp. pallidum str. Chicago] Length = 644 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 199/376 (52%), Gaps = 9/376 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A+ +G+ T +Q A + P L D ++ A+TG+GKT AFGL L L SP Sbjct: 55 AVRLKGFRCPTPIQAAAI-PRLLAGDANIIAKARTGTGKTAAFGLPLIQEL------GSP 107 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL + PTRELA QV EL L + + GGVS+ + R+L+ G I+VGT Sbjct: 108 CEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGEIIVGT 167 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GR+ DHI L +S+L+ +LDEADEML++GF +DIE I + K R+LMFSAT+ Sbjct: 168 TGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPR 227 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++A + V + I+ +V +D+ A+V ++ +VFC Sbjct: 228 QILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFC 287 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A K L E + V AL G++ Q +R L+ R RAR+ +ATDVAARGID+ Sbjct: 288 QTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIE 347 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ + + HR GRTGRAG +G+++ + + RR E L + N + Sbjct: 348 GITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHCNGELKAST 407 Query: 372 APSVEAIRERDAQRIL 387 P VE I + RI Sbjct: 408 VPLVEHILTQKEGRIF 423 >gi|257482474|ref|ZP_05636515.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330984618|gb|EGH82721.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009703|gb|EGH89759.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 459 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 19 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 76 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368 >gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 525 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 213/384 (55%), Gaps = 15/384 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+S+ G+ + +QE + L D++ AQTG+GKT A+ L + + + S Sbjct: 15 IVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIIT-------KMS 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129 +L +APTRELAVQV E++ L +V GG S+ R+ R L+ G IVV Sbjct: 68 DNRGIKSLILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQIRALRKGDVDIVV 127 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D ++ K L++ ++ +VLDEADEML++GF DDI+ IL +P +R+ L+FSAT+ Sbjct: 128 GTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQTLLFSATM 187 Query: 190 SPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 I LAK Y K DA V+I + S I+ ++ R A+ +L +AI Sbjct: 188 PDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNPSSAI 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ V + L + V + G+++Q R L ++G + IATDVAARGI Sbjct: 248 IFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIATDVAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANV 365 D+ + V + +L + E+ +HR GRTGRA + G + V P++ M ++ + + + Sbjct: 308 DVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQIQNVTKS--- 364 Query: 366 SVVWEPAPSVEAIRERDAQRILQD 389 S+ +P P+ E I + + ++ + Sbjct: 365 SITQKPVPTAEEINNKKFKDMMSE 388 >gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512] Length = 499 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 130/345 (37%), Positives = 191/345 (55%), Gaps = 6/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+++ GY T +Q + L +D+ AQTG+GKT +F L + S L Sbjct: 9 LSQKVLSAVADAGYSTPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGR 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P L + PTRELA QV E + VA+ IGGVS + R L+ GA Sbjct: 69 AR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH L +S ++ +V+DEAD MLD+GF DIE I P R+ L FS Sbjct: 126 VLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA 244 AT+ P I LA + ++ RV +A + R V D + V ++R G Sbjct: 186 ATMPPEIQKLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQGE 245 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG ++ +A+DV Sbjct: 246 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQLLVASDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 306 AARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 350 >gi|289624121|ref|ZP_06457075.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647605|ref|ZP_06478948.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi str. 2250] gi|320321939|gb|EFW78035.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea str. B076] gi|320330955|gb|EFW86929.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea str. race 4] gi|330865833|gb|EGH00542.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330872189|gb|EGH06338.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea str. race 4] Length = 459 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 19 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 76 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368 >gi|317495876|ref|ZP_07954239.1| DEAD/DEAH box helicase [Gemella moribillum M424] gi|316914053|gb|EFV35536.1| DEAD/DEAH box helicase [Gemella moribillum M424] Length = 485 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 197/355 (55%), Gaps = 10/355 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE + I E+L+ +V+ T +Q + L D+L AQTGSGKT AFG+ + Sbjct: 1 MTTFEELGVSSKIVESLTNMNFVSPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPI 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 T+ + S L +APTRELA QVG +L + G+ V++ GG S+ R+ Sbjct: 61 VDTVRKTEELQS-------LILAPTRELAQQVGEQLRLMSRVKGLKVSIIFGGTSIERQI 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +DL+ I+VGTPGR+ DHI K + + L +VLDEADEML++GF +D+ FIL Sbjct: 114 QDLKKRPQIIVGTPGRVIDHINRKTIRLETLTHLVLDEADEMLNMGFIEDVRFILSKITS 173 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + + L+FSAT+ I L+K++ KD V S+ + DI A + +++ ++ Sbjct: 174 RHQTLLFSATMPKTIMELSKDFMKDYKLVKTMSDEDLNPDITEFATIARENEKLETLIGF 233 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L AIVF T+ V + L + L G+++Q +R L+ ++ ++ Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARGID+ D+ V + ++ + E+ HR GRTGRAG+ G++V F+ P M Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEM 348 >gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546] gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546] Length = 643 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 203/355 (57%), Gaps = 12/355 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL G+V+ T +Q A + L KD L AQTG+GKT AF L L + L LA+ Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLDLAQR------ 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAHIVVGT Sbjct: 74 -KPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRALKNGAHIVVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P Sbjct: 133 PGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLFSATMPP 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + ++ + + +D +++A +N ++ + +V ++D A+ +L +IVF Sbjct: 193 MLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 253 RTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVP 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367 >gi|170755466|ref|YP_001781330.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum B1 str. Okra] gi|169120678|gb|ACA44514.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B1 str. Okra] Length = 481 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 123/351 (35%), Positives = 195/351 (55%), Gaps = 10/351 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN + I ++L + GY N + VQ+ ++ L++KD++V ++TGSGKT AF + + Sbjct: 6 FENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVCEK 65 Query: 62 L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L L E D P L + PTRELA+Q+ E+ + + G + ++R+ Sbjct: 66 LELEEKD-------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ H+VVGTPGR DHI + L++ +K VLDEADEML++GF D +E ++ PK R Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++FSATI I L K Y + +NI EN I+ V D+ + + I+ Sbjct: 179 VTMLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIY 238 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 N+I+FC+TR V K + + V L G + Q++R ++ ++G + + Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLVC 298 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 TDVAARGI + ++ VI+ E+ E+ +HR GRTGRAG++G+++ I N Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPN 349 >gi|294789302|ref|ZP_06754540.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453] gi|294482727|gb|EFG30416.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453] Length = 455 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 202/367 (55%), Gaps = 14/367 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I AL GY + T +Q + L +KD++ SAQTGSGKT AF L ++ Sbjct: 9 NLDKNILSALQSAGYHSPTPIQMQAIPAALADKDIMASAQTGSGKTAAFLLPSLQKIIKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P L + PTRELA QV + + +YA V +GG S ++ + L Sbjct: 69 SEK--PGKGPRVLVLTPTRELAAQVEKNAQ-IYANNMKWVRTVTLVGGSSFGQQIKMLSR 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL DH+R ++ L+ ++LDEAD MLD+GF DDIE I+ ++P+ R+ L Sbjct: 126 PIDVIVATPGRLMDHMRSGRIDFERLEVLILDEADRMLDMGFIDDIETIVAATPEDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242 +FSAT A+ LA+ K+ + I E++Q I+ + + + N +++ ILR Sbjct: 186 LFSATWDGAVGKLARKLTKNPEIIEIEREDKQ-GKIEEQLLYCDDKNHKNRLLDHILRDA 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATD Sbjct: 245 NIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-------FVIPQNMQRR 355 VAARGID+P + VI+ +L E+ +HR GRTGRAGR GM++ ++ ++R Sbjct: 305 VAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGMAISFAEVNEYIAVHKIERY 364 Query: 356 AERLFRE 362 ER E Sbjct: 365 IERKLPE 371 >gi|303238769|ref|ZP_07325301.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] gi|302593648|gb|EFL63364.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] Length = 544 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 152/519 (29%), Positives = 268/519 (51%), Gaps = 32/519 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+++ G+ T +Q + L+ D++ AQTG+GKT AFG+ L + Sbjct: 10 NLSDEIQKAIADMGFEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIPAIEMLDPQ 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 N+ L ++PTRELA+Q+ EL + K G+ + GG + R+ L+ Sbjct: 70 NEGIQ------VLILSPTRELAIQISEELRDVSKYKEGIKILPVYGGQPIDRQIAALKKR 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I++GTPGR+ DH+R + L ++ LK ++LDEADEML++GFR+DI+ IL+ P++++ ++ Sbjct: 124 PQIIIGTPGRIMDHMRRRTLKLADLKMLILDEADEMLNMGFREDIDTILEKVPEEKQTIL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I L Y K+ + + A + I+ + V+ S + + ++ + Sbjct: 184 FSATMPKEILDLTSKYLKNPLHIKAAHKQMTVPSIEQFYLEVSQSSKLEILSRLIDANNI 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++VFC+T+ V T L + AL G++ Q +R+ + R G+ + IATDVA Sbjct: 244 GLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILIATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREA 363 ARGID+ ++E V + +L S+ E +HR GRTGRAG+ G S FV+ + + + + + R Sbjct: 304 ARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGRAGKTGKSFTFVVGREIHKLKD-IQRYT 362 Query: 364 NVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKK---MVDVLLAKHDPEKIA 417 ++ P+ + ER IL +D L +G+ K V+ +L + + + + Sbjct: 363 KSTIHLIKPPTAMDVEERKIGLILNKVKDTL----AEGNFSKYVSYVEKVLDEANSKDLD 418 Query: 418 AGF---LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474 + L I A L + + +D +D+ GS++ G ++VG Sbjct: 419 TNYVTNLEIAAALLKTIFDQNNDQTSNAQDIIEEDT-------GSKE---GMVRLFINVG 468 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 K + + ++ + + + + IGAI + TFVEV Sbjct: 469 RDSKIQPKHIVESIASCTSLPGKLIGAIDIFDRFTFVEV 507 >gi|302189857|ref|ZP_07266530.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae 642] Length = 459 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 19 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 76 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368 >gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 10876] gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 10876] Length = 528 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 70 -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 V AP+++ E QR++ + L +IQ + K++ + +L ++D + A L Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIQNENLSYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|297620018|ref|YP_003708123.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus voltae A3] gi|297378995|gb|ADI37150.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3] Length = 584 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 136/385 (35%), Positives = 216/385 (56%), Gaps = 17/385 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEA----ILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 NI + I E L E+G+ T +QE +L+ +L DV+ AQTG+GKT+AFG+ + Sbjct: 7 NISESIMERLDEKGFTEATQIQEKAIPIVLDTEL---DVVGQAQTGTGKTLAFGIPIIQK 63 Query: 62 L---LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + + EN R A A+ + PTRELA+QV E++ + + + GG S+ ++ Sbjct: 64 IQEKIEENGR-KNKKAVKAIILTPTRELALQVHDEIDSVNKGNKLRLCTVYGGQSIEKQI 122 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+NG IV+GTPGR+ DH+ + L ++ + +VLDEADEML+LGF DD+E I+ + Sbjct: 123 NKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKCKE 182 Query: 179 KRRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 R L+FSAT+ +I L + + + + +RV + + ++ Y V D+ + Sbjct: 183 DCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYE--VKEHDKFELLR 240 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 I+ +VFC T+A V + + L + + AL G+++Q++R AL + + Sbjct: 241 RIIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKID 300 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR 355 + IATDVAARGID+ +L VI+ ++ NPE +HR GRTGRAG KG ++ FV P+ RR Sbjct: 301 IMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREF-RR 359 Query: 356 AERLFREANVSVVWEPAPSVEAIRE 380 + + + + E P V I E Sbjct: 360 FKYIMKISKSDAKKEKIPDVTEIVE 384 >gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427] gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM 5427] Length = 592 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 204/377 (54%), Gaps = 7/377 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A + G+ T +Q + L+ D++ A TG+GKT AFG+ ++ N++ Sbjct: 20 AAHDMGFEETTPIQGKAIPIILQGNDIIAQAPTGTGKTCAFGIPAIESVDTTNEKVQ--- 76 Query: 74 APLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTREL +Q EL L K G+ GG + R+ L+ I+VGTP Sbjct: 77 ---VLILCPTRELVIQTTEELSALAKYKRGIRTLPIYGGQQIDRQIIALKKRPQIIVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R L + HLK ++LDEADEML++GFR+DI+ IL+S P++R+ ++FSAT++ A Sbjct: 134 GRIMDHLRRGTLKLEHLKMIILDEADEMLNMGFREDIDVILESVPEERQFVLFSATLAKA 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A YQ + + VN+ + + + V S++ + ++ + K ++VFC+ Sbjct: 194 ILDIANKYQNNPITVNVVHKELTVPTVKQYYLEVRDSNKVEVLSRLIDANNFKLSVVFCN 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L + +L G++ Q +R N + R+G + IATDVAARGID+ D Sbjct: 254 TKRRVDDLCRDLQARGYSAESLHGDMKQLQRDNVMSRFRNGLIDILIATDVAARGIDVDD 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 ++ V + ++ S+ E +HR GRTGRA R+G+S + + R + Sbjct: 314 VDAVFNYDVPSDEEYYVHRIGRTGRAQREGVSYTFAAGKELAKLRDIQRYTKSKIKLIKP 373 Query: 373 PSVEAIRERDAQRILQD 389 PS+E I+E I+ D Sbjct: 374 PSIEDIQENKLSGIIDD 390 >gi|332532397|ref|ZP_08408275.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis ANT/505] gi|332038040|gb|EGI74487.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis ANT/505] Length = 592 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 198/366 (54%), Gaps = 12/366 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77 GY + +Q + L KDVL AQTG+GKT AF L L + + P+ P Sbjct: 2 GYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNI-------DPSVKQPQI 54 Query: 78 LAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 L + PTRELA+QV E YAK G+ V GG S + L+ GA ++V TPGRL Sbjct: 55 LVLTPTRELAIQVAEAFEQ-YAKHVRGIEVLALYGGQSYSIQLSALRRGAQVIVATPGRL 113 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 DHI + L+A+VLDEADEML +GF DD+E I++ +P++++ +FSAT+ I Sbjct: 114 IDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLFSATMPKQIQN 173 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 ++ Y + +V+I++ N S ++ + A ++ AIV L + AIVF TR Sbjct: 174 ISSKYMNNPEQVHISARNSTVSSVE-QVFWNASVHKNKAIVRFLEAEQYEGAIVFVRTRN 232 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 + ++L F L+G+++QQ R + ++ G + IATDVAARG+D+ L L Sbjct: 233 DTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNIVIATDVAARGLDVDRLSL 292 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375 VI+ ++ + E +HR GRTGRAGR G ++ + N + + + R + P+ Sbjct: 293 VINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRHTKSEIAQVELPTA 352 Query: 376 EAIRER 381 + + E+ Sbjct: 353 KIVEEK 358 >gi|260591877|ref|ZP_05857335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella veroralis F0319] gi|260536161|gb|EEX18778.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella veroralis F0319] Length = 657 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 144/430 (33%), Positives = 224/430 (52%), Gaps = 28/430 (6%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 +K FE + + I A+SE G+ + VQE ++ P L DV+ AQTG+GKT AFGL Sbjct: 25 LKTFEELGVSEEIRRAISELGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 83 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L + + + + A+ ++PTREL +Q+ +L ++ + +A GG S+ Sbjct: 84 PLLQRID------TSSKSTQAIVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASID 137 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + L++G I+V TPGRL D + + ++ VVLDEADEML++GF++ I IL Sbjct: 138 TQIHQLRHGVQIIVATPGRLIDLMHRGKARLDQVRNVVLDEADEMLNMGFQESITEILTG 197 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P+ R L+FSAT+S + +AK Y D + + S N +++ +V D+ A+ Sbjct: 198 VPEDRNTLLFSATMSRDVEKVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLAL 257 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 ++ ++ AIVFC T+ L + + +L G+LSQQ+R +Q R Sbjct: 258 KRLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLT 317 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 ++ +ATDVAARG+D+ DL VI+ L + EN HRSGRTGRAG+KG S+ +I + + Sbjct: 318 QILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYK 377 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415 + RE + PS E I + LF K M ++L D E+ Sbjct: 378 VRNIEREIGKEFIDGTLPSPE--------EICKKQLF--------KTMDNILKTDVDEEQ 421 Query: 416 IAAGFLRIHR 425 IA I+R Sbjct: 422 IAPYMEDINR 431 >gi|238760236|ref|ZP_04621381.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236] gi|238701559|gb|EEP94131.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236] Length = 660 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 171/567 (30%), Positives = 269/567 (47%), Gaps = 45/567 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72 AL++ GY + +Q + L +DVL AQTGSGKT AFGL L + P Sbjct: 21 ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI-------DPTL 73 Query: 73 SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELA+QV + L ++ +GV V GG + R L+ G +VVGT Sbjct: 74 KAPQVLVLAPTRELAIQVAQALTDFSKHMSGVNVVALYGGQRYDVQLRALRQGPQVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ LN+S+L +VLDEADEML +GF +D+E IL P + + +FSAT+ Sbjct: 134 PGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATMPE 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250 AI + + + K+ V I S DI V ++ A+V L AI+F Sbjct: 194 AIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVRFLESEDFDAAIIF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + AL+G+++Q R L ++DGR + IATDVAARG+D+ Sbjct: 254 VRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDILIATDVAARGLDV 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + + R +++ Sbjct: 314 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNVERTMKLTIPEV 373 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI- 423 P+ E + ER + ++ + M LLAK P E +AA L++ Sbjct: 374 QLPNAELLGERRLAKFAAK--VGQQLESSDLDMYRALLAKLQPEDGFDLETLAAALLKMA 431 Query: 424 --HRAGLCAPE--------------EITPVSLVSGRDRFRDDSRAFKVGGGSRD------ 461 R + PE + R R + RA GG R Sbjct: 432 QGERPLILPPEAPRRPQREFNSRDDRGSDRGRDRDRGDSRREPRADSRDGGERPARRERR 491 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517 + + + VG E R ++ + I+ + IG I++ + +E+ + Sbjct: 492 DVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEM 551 Query: 518 VDLLRRTVKLDKGIQLKYLGGEKPDFR 544 + RT L+K + ++ LG +P R Sbjct: 552 LSHFTRTRILNKPLNMQLLGDAQPHER 578 >gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43] gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43] Length = 509 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 196/345 (56%), Gaps = 10/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + A+++ GY T +Q + P L +D+L AQTG+GKT +F L + + L R Sbjct: 11 QKVLSAVTDAGYTTPTPIQAGAIPPALERRDILGIAQTGTGKTASFVLPMLTMLERGRAR 70 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P L + PTRELA QV E + + + IGGVS + R L+ GA ++ Sbjct: 71 ---ARMPRTLILEPTRELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLERGADVL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT Sbjct: 128 IATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERIVKLIPFTRQTLFFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYH-G 243 + P I LA + ++ R+ +A + + + + LVA S +D + +++R Sbjct: 188 MPPEIQKLADKFLQNPARIEVAPPSSTAATVTQK--LVACSGKDFEKRERLRDLIRSQTD 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 NAI+FC+ + V+ K L +H F V AL G++ Q+ R+N LQ +D + +A+DV Sbjct: 246 LTNAIIFCNRKKDVADLYKSLEKHGFSVGALHGDMDQRSRTNMLQGFKDNEITLLVASDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+P + V + ++ + E+ +HR GRTGRAGR+G + ++ Sbjct: 306 AARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLV 350 >gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii OhILAs] Length = 529 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 157/519 (30%), Positives = 265/519 (51%), Gaps = 41/519 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I + + E GY T +Q + +D++ AQTG+GKT AFG+ + Sbjct: 11 NIKKDILKGILELGYEVPTPIQAQAIPRLYAGEDIIGQAQTGTGKTAAFGIPML------ 64 Query: 66 NDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 ++ +P P L +APTREL++QV E+ ++ I GG + R+ + L+ Sbjct: 65 -EKINPQQKTPQVLILAPTRELSMQVADEIRKFSKYLSGAKSIAIYGGQPIDRQIKALKQ 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +IVVGTPGR+ DHIR K L + + +VLDEAD+MLD+GF DDIE IL +P +R+ + Sbjct: 124 GVNIVVGTPGRILDHIRRKTLRLDQIVGLVLDEADQMLDMGFSDDIEAILQETPSERQTV 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT+ I +AK Y K+ +V + + I V ++ +A+ IL Sbjct: 184 MFSATMPKEIEEIAKKYMKNPKKVKVVHKELTVPKISQYYFEVRPHEKLDALCRILDMEN 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++ I+FC T+ V + L + V + G+L Q +R ++ RDG + IATDV Sbjct: 244 SELGIIFCRTKKGVDELVENLQSRGYSVEGIHGDLKQSQRDRVMKKFRDGTLDLMIATDV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D++LV++ ++ + E +HR GRTGRAGR+G++ ++ R + L Sbjct: 304 AARGIDVDDVDLVVNYDVPEDFEYYVHRIGRTGRAGREGLAYTLVTGKQIRTLKALEAYI 363 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ----GDEKKMVDVLLAKHDPEKIAAG 419 + +P P++ I E+ + I ++ + +I+ + +V+ L ++ +AA Sbjct: 364 KGKIKRKPIPTINDIVEKKKEMIGKE--IIGNIEKGGLSEYAAIVENLSEEYSSIDVAAA 421 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL-----SVG 474 L++ + ++++ AF+ + K S S+ ++G Sbjct: 422 LLKMIMS--------------------QNETDAFETAKNITEK-KAKSEGSMVRMFVNIG 460 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 K A+ ++ + SGI+ +G I + TFVEV Sbjct: 461 KKHGAKPGDILGAISGESGISGDLVGVIEMYDKFTFVEV 499 >gi|42527612|ref|NP_972710.1| DEAD-box ATP dependent DNA helicase [Treponema denticola ATCC 35405] gi|41818440|gb|AAS12629.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Treponema denticola ATCC 35405] Length = 570 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 165/576 (28%), Positives = 266/576 (46%), Gaps = 35/576 (6%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 ++ +A+ +G+ T +Q + P L E +V+ A+TG+GKT AFGL L L + Sbjct: 13 IVLQAVEAKGFEEPTPIQ-VLAIPRLLSGEANVIAKARTGTGKTAAFGLPLVQELRSNTG 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + AL + PTRELAVQV ELE + +A GG ++ + R L+ G I Sbjct: 72 KVR------ALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSLKTGVEI 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DH+ L I ++ +LDEADEML++GF +DIE I + + R+LMFSA Sbjct: 126 VVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEARVLMFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I ++A ++ D V + + S + +V D+ A+V ++ Sbjct: 186 TMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVVREGDKTEALVRLIDTSPNFYG 245 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VFC T+ K L E ++ AL G++ Q +R L+ R + R+ +ATDVAARG Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 ID+ + V++ + + HR GRTGRAG G++V + N +R E L + A + Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRIEYLRKHARGEL 365 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-------MVDVLLAKHDPEKIAAGF 420 PS+E + E RIL++ + E+K + L D + + + Sbjct: 366 KEGKIPSIEQVIEIKRTRILKETAAQIEKRISEEKPEQGFAAFANKLTEYGDAQTVLSFI 425 Query: 421 LRIHRAGLCAPEEITPVSLV--SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 L++ +P + V G+ R DD S + VG K Sbjct: 426 LQMQYGSFLSPAHYKTIKPVRSEGKARKSDDD---------------SLRLYIGVGRKDG 470 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG- 537 R L ML R I + + I V + + + + R K +G+ ++ Sbjct: 471 ITKRKLAEMLSRLLSIPERLVDDIEVMDKFSLATMPKNAANDALRLCKKKRGLPHMHIDV 530 Query: 538 -GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572 E P G G + + ++G ++ + ASK Sbjct: 531 KSEAPTNYGSIGKGKRGQKRKNGTQRKKEGLSSASK 566 >gi|319957241|ref|YP_004168504.1| dead/deah box helicase domain protein [Nitratifractor salsuginis DSM 16511] gi|319419645|gb|ADV46755.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis DSM 16511] Length = 421 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 5/369 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+S GY T +Q + L DVL +AQTG+GKT F L L L+ +N R Sbjct: 17 ILKAVSAEGYTTPTPIQAQAIPAVLEGHDVLAAAQTGTGKTAGFTLPLLERLI-QNPRQM 75 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGV + ++R + G IV+ Sbjct: 76 KARQVRALVLTPTRELAAQVAESVRTYGKNLKIRSTVVYGGVGIEPQKRAIARGCEIVIA 135 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + +++S L+ ++LDEAD MLD+GF DI+ I+ +PK+R+ L+FSAT S Sbjct: 136 TPGRLLDLANQRAIDLSALETLILDEADRMLDMGFIHDIKKIIAQTPKERQTLLFSATFS 195 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA KD V + +A +N + + V + ++ +++ G K +VF Sbjct: 196 PEIKRLAAGMLKDPVLIEVARQNTTAEQVSQKVHHVDRHRKQELLIRMIKEKGWKQVLVF 255 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ +K L + A+ G +Q R AL+ ++ R RV +ATD+AARGID+ Sbjct: 256 TRTKHGANKLSKQLDQAGIPSEAIHGNKTQNARMKALKSFKENRVRVLVATDIAARGIDI 315 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367 L V++ EL + E+ +HR GRTGRAG +G + V V + R ER F +A + Sbjct: 316 AALPHVVNFELPNVAEDYVHRIGRTGRAGSEGEALSLVCVDEHQLLRNIER-FIKAEIPK 374 Query: 368 VWEPAPSVE 376 + P V+ Sbjct: 375 IATPGFEVD 383 >gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681] gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681] Length = 559 Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 210/370 (56%), Gaps = 17/370 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL E+G + T VQ+ + + +DV+ A TG+GKT+AF L + L + Sbjct: 25 EALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDKRH---- 80 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL IAPTRELA+Q+ E L A + + + GG V R+ R L+ GA +++GT Sbjct: 81 --PQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLRKLKGGAQLIIGT 138 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R L++ +K +VLDEAD+ML +GF +D+E IL P +R+ ++FSAT+ Sbjct: 139 PGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQTMLFSATMPA 198 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249 I LA+ Y + V V + S + R V+V +DR A+V++L A++ Sbjct: 199 GIRKLARVYMNEPVDVKVKSASSVPVS-QIRQVVVQTTDRGKQQALVDMLNTDRPYLAVI 257 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ ++ + L E F+ L G+LSQ +R ++ R+ + ++ +ATDVAARG+D Sbjct: 258 FCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLVATDVAARGLD 317 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----IPQ--NMQRRAERLFRE 362 + + V + ++ + E+ +HR GRTGRAG KG++V + +P+ N+QR A F Sbjct: 318 VEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQRVAGVTFTS 377 Query: 363 ANVSVVWEPA 372 + PA Sbjct: 378 SEGGGQRRPA 387 >gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842] gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 200] gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis Bt407] gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842] gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis Bt407] gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 200] gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar chinensis CT-43] Length = 529 Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 70 -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 V AP+++ E QR++ + L +IQ + K++ + +L ++D + A L Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIQNENLSYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 4222] gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis IBL 4222] Length = 521 Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 70 -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 V AP+++ E QR++ + L +IQ + K++ + +L ++D + A L Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIQNENLSYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|295133956|ref|YP_003584632.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia profunda SM-A87] gi|294981971|gb|ADF52436.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia profunda SM-A87] Length = 598 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 209/361 (57%), Gaps = 17/361 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 I +A+ + G+ + + VQE + P L E D++ AQTG+GKT AFG L + Sbjct: 13 ILKAIEDMGFESPSEVQEKTI-PILLDEETDMVALAQTGTGKTAAFGFPLIQ-------K 64 Query: 69 FSPASAPL-ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P S AL ++PTREL +Q+ EL+ Y + VAV GG S+ + + ++ GA Sbjct: 65 IDPKSKHTQALILSPTRELCLQITNELKNYSKYEPSLHPVAV-YGGASITDQAKQIERGA 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGR+ D IR K +IS ++ VLDEADEML++GF +DI IL +PK++ +F Sbjct: 124 QIIVATPGRMQDMIRRKLTDISKIEYCVLDEADEMLNMGFYEDITAILSHTPKEKNTWLF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + T+AK + ++ V V + S+N +++ + LV DR A+ + + Sbjct: 184 SATMPKEVATIAKKFMRNPVEVTVGSKNMGATNVSHEFYLVNARDRYAALKRLADANPDI 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++FC T+ + + L E + AL G+LSQ +R ++ R + ++ +ATDVAA Sbjct: 244 FSVIFCRTKRDTQKVAERLIEDGYSAAALHGDLSQNQRDLVMKSFRTRQIQMLVATDVAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFRE 362 RGID+ D+ VI+ +L E HRSGRTGRAG+ G S+ ++ ++ R+ ER+ ++ Sbjct: 304 RGIDVDDITHVINYQLPDEVETYTHRSGRTGRAGKLGTSMVIVSKSELRKIKSIERIIKQ 363 Query: 363 A 363 + Sbjct: 364 S 364 >gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori HPKX_438_AG0C1] Length = 492 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 33 KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 90 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA + ++DI R ++ +R AI+ +L K +IVF Sbjct: 206 IKRLADKILENPIKIHIAPSDITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + LA ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDIGG 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385 Query: 373 PSV 375 P++ Sbjct: 386 PTI 388 >gi|256018403|ref|ZP_05432268.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9] gi|332279457|ref|ZP_08391870.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9] gi|332101809|gb|EGJ05155.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9] Length = 457 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQVAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAVISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSILPLEAE 381 >gi|320653569|gb|EFX21674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 457 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVMLEAE 381 >gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA] gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA] Length = 498 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 130/343 (37%), Positives = 194/343 (56%), Gaps = 12/343 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72 AL+E GY T +Q A + DV+ +AQTG+GKT F L + LL + N SPA Sbjct: 32 ALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIHNLLPDANTSASPA 91 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA QV + T + AV GGV ++ + L+ G I+V T Sbjct: 92 RHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVAT 151 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ + +N+S ++ +VLDEAD MLD+GF D++ I++ P R+ L+FSAT SP Sbjct: 152 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSP 211 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHG----AK 245 I LA +Y + + +A N ++ R V+ + D + A+V++LR + Sbjct: 212 EIKRLAASYLRHPQTIEVARSNATAENV--RQVIYTVPDNHKQAALVHLLRQRAEQGLPR 269 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF +++ SR + L A+ G+ +Q ER L+ + G V +ATDVAA Sbjct: 270 QCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDVAA 329 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 RG+D+ + VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 330 RGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 372 >gi|323964518|gb|EGB59993.1| DEAD/DEAH box helicase [Escherichia coli M863] Length = 398 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 IT ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 ITAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 583 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/424 (32%), Positives = 226/424 (53%), Gaps = 10/424 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M+ FE+ + Q I +A++E G+ + VQ + L+ D++ AQTG+GKT AFGL Sbjct: 1 MQTFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPT 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 S + A +R L I PTRELA QV EL L G+ GG S R+ Sbjct: 61 MSMIDANQNRVQ------LLVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQI 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 ++ GA ++V TPGR+ D ++ L K VVLDEADEMLD+GF +DIE I PK Sbjct: 115 GLIEKGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPK 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVN 237 +R+ L+FSAT+ I LA + V+I ++ + DI+ ++ +RD+A++ Sbjct: 175 ERQTLLFSATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIR 234 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L + +IVFC T+ V R + L + L G++ Q +R + ++ R + + Sbjct: 235 LLDALEPEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEI 294 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARG+++ D+ V + + +PE+ +HR GRTGRAG+KG ++ ++ + Sbjct: 295 LVATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQ 354 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417 R+ ++ + P++ ++E +I D + + + K++ +L + D +IA Sbjct: 355 RIGKKVGSKIEHRIVPNLRDVKENKLIKIADD-IKNAELNENASKLLAILEEEMDMSQIA 413 Query: 418 AGFL 421 L Sbjct: 414 LKLL 417 >gi|11499835|ref|NP_071079.1| DEAD-box ATP dependent DNA helicase [Archaeoglobus fulgidus DSM 4304] gi|2648271|gb|AAB89003.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus fulgidus DSM 4304] Length = 368 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 135/345 (39%), Positives = 197/345 (57%), Gaps = 24/345 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+ +G+ T +Q I+ EKD++ AQTGSGKT AF L + + ++R Sbjct: 21 AVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPILDLV---DERSKDV 77 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + I PTRELA+QV E+E L V V GG + + L+ G IVVGTP Sbjct: 78 QA---IVITPTRELALQVKDEIESLRGGKKVHVLAVYGGQPIFPQIERLRKGVQIVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ + L++ ++ VLDEAD MLD+GF DDIE IL + +RR+LMFSAT+ P Sbjct: 135 GRVIDHLERRTLSLEKVRFFVLDEADRMLDMGFIDDIERILRHAGAERRVLMFSATMPPE 194 Query: 193 ITTLAKNYQKD--AVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAK 245 + LA+ Y +D VRV+ I EN +++R + V R + IL ++G Sbjct: 195 VLRLARRYMRDYEVVRVHSKITPEN-----VEHRCLKVNPEKRFEHLCRILDENNFYG-- 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ + L ++ AL+G++ Q +R + L+ R G RV +ATDVAA Sbjct: 248 --IVFCQTKKETRELGRRLRARGYKADALNGDIPQHKRESILRNFRKGYTRVLVATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 RGID+ DL V++ + +PE +HR+GRTGR G++G ++ FV P Sbjct: 306 RGIDVKDLTHVVNYSIPQDPEAYIHRTGRTGREGKRGKAITFVAP 350 >gi|66043783|ref|YP_233624.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae B728a] gi|63254490|gb|AAY35586.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 473 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 33 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 89 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 90 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 146 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 147 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 206 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 207 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 264 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 324 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 382 >gi|86142743|ref|ZP_01061182.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis MED217] gi|85830775|gb|EAQ49233.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis MED217] Length = 592 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 122/366 (33%), Positives = 204/366 (55%), Gaps = 8/366 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I +A+++ G+ + VQE + LRE+ DV+ AQTG+GKT AFG L + N Sbjct: 13 ILQAVTDMGFKAPSEVQEKAIPVLLREETDVVALAQTGTGKTAAFGFPLIQRIDVNN--- 69 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIV 128 L ++PTREL +Q+ EL+ + G+ V GG ++ + R + GA I+ Sbjct: 70 ---RNTQGLILSPTRELCLQITNELKNYSSHVKGLNVVAVYGGANIQEQARQISRGAQII 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGR+ D +R ++I+ + VLDEADEML++GF +DI IL +PK ++ +FSAT Sbjct: 127 VATPGRMQDMMRRNMVDITGIDYCVLDEADEMLNMGFYEDITTILADTPKDKKTWLFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + +AK + K + + + ++N ++ + +V DR A+ + + ++ Sbjct: 187 MPKEVARIAKQFMKSPIEITVGTKNMGAENVSHEYYMVNARDRYQALKRLADANPEIFSV 246 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ + + L E + AL G+LSQ +R ++ R+ + ++ +ATDVAARGI Sbjct: 247 IFCRTKRDTQKVAENLIEDGYNASALHGDLSQNQRDLVMKSFRNRQIQMLVATDVAARGI 306 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ D+ VI+ +L E HRSGRTGRAG+ G+S+ ++ ++ R+ L + N Sbjct: 307 DVDDVTHVINYQLPDEIETYTHRSGRTGRAGKTGISMVIVSKSELRKIRTLEKIINKKFT 366 Query: 369 WEPAPS 374 + PS Sbjct: 367 QKEIPS 372 >gi|297569193|ref|YP_003690537.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925108|gb|ADH85918.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 528 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 132/390 (33%), Positives = 208/390 (53%), Gaps = 19/390 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++PQ + A+ G+ T +Q IL P L D AQTG+GK+ AF +++ + LL E Sbjct: 106 DLPQELMRAIHASGFQYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITRLLRE 165 Query: 66 NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QN 123 D A P AL +APTRELA+Q+ R+ E L + + GG ++R+ Q Sbjct: 166 PDTVPRQLALPKALILAPTRELAIQIHRDAEELTQYSELNCVAVFGGTDYEKQRKMFEQA 225 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RR 181 +++ TPGRL D R K +++ ++ +V+DEAD +LD+GF D+ I+ +P+K R+ Sbjct: 226 PVDLLIATPGRLLDFARQKVVSLKEVRVLVIDEADRLLDMGFIPDVRRIIQQTPEKSQRQ 285 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT++ I L+ + KD V V I E ++ R +V ++ + N++ Sbjct: 286 TLFFSATLNSQIANLSAQWTKDPVTVEIEPEQVASDRVEQRVYMVTAKEKMTVLYNLITG 345 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + IVFC+ R R + L H LSGE+SQQ+R L ++G+ RV +AT Sbjct: 346 KQLERVIVFCNRRDVTRRVRERLYRHGISCAMLSGEVSQQQRMKTLDNFKEGKIRVLVAT 405 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIP---Q 350 DVA RG+ + + VI+ L + E+ +HR GRTGRAG G+SV F +P + Sbjct: 406 DVAGRGLHIEGISHVINYNLPEDAEDYVHRIGRTGRAGASGISVSFADEEESFYLPAIEE 465 Query: 351 NMQRRAERLFREANVSVVWEP----APSVE 376 M R+ + ++ E + + P AP V+ Sbjct: 466 YMGRKLDCVYPEDELLIPLPPPVQKAPPVD 495 >gi|42779348|ref|NP_976595.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987] gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|217957807|ref|YP_002336351.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1] gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST26] gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293] gi|81700027|sp|Q73EU1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus ATCC 10987] gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1] gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293] gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST26] gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 525 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R + Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L ++I+ + K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QNTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 530 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 153/517 (29%), Positives = 248/517 (47%), Gaps = 51/517 (9%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + + E+G+ T +Q + + D++ AQTG+GKT +FG+ + +R Sbjct: 17 QMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPIL-------NRVIKG 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELAVQV E+ L + + V GG S+ + R L+ I+VGTP Sbjct: 70 EGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLRSLRRNPEIIVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ +++S LK VVLDEADEMLD+GF DI+ IL P++R+ +FSAT+ Sbjct: 130 GRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFLFSATLPDE 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L + K + I S R +I+ V + + I+ +++FC Sbjct: 190 VRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRIIDAQQPPISLIFCR 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + +VL + AL G++SQ+ER + + R G ++ +ATD+AARG+ D Sbjct: 250 TKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVATDLAARGL---D 306 Query: 313 LELVIHAELSSNPENL---LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 +ELV H PE+L +HR GRTGRAGR G+++ ++ R + R + Sbjct: 307 IELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIERHTGKRIER 366 Query: 370 EPAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDV-------LLAKHDPEKIAAGFL 421 P++ EA+ +R QD L L+ ++ + DV L+ + DPEK+ A L Sbjct: 367 ALLPTLAEAVEKR------QD-LLLERVRQASAEPGDVCLSLAEKLMQQGDPEKMLAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481 ++ D+ F++ + + L G Q Sbjct: 420 KL----------------------LIDEEPDFEMAELPESD-DSMAHLELPAGRLQGIHP 456 Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 R L+ + + ++ Q +G I + + TFVEV D + Sbjct: 457 RQLLEFIATHTSLSPQRVGDIEINRNSTFVEVPMDYI 493 >gi|301311699|ref|ZP_07217624.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 20_3] gi|300830259|gb|EFK60904.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 20_3] Length = 606 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 196/353 (55%), Gaps = 14/353 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + I +A+ E GY + VQE ++ P L + DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEELGVAAPILKAIQEMGYESPMPVQEEVI-PFLLGEDNDVIALAQTGTGKTAAYGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 + + P AL + PTREL +Q+ +L Y+K + V GG S+ Sbjct: 60 PILQKINVSQ------YQPQALILCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + L+ G H+VV TPGRL D + K +++S++K V+LDEADEML++GF D I IL Sbjct: 113 ESQIKTLKRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 + P+ R ML+FSAT+ I ++ K Y KD + I +N + +I +V D+ A Sbjct: 173 AIPENRNMLLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + + Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRLADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 ++ +ATDVAARG+D+ DL VI+ L E+ HR GRTGRAG+ G+++ + Sbjct: 293 IQLLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISI 345 >gi|150009493|ref|YP_001304236.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503] gi|256838225|ref|ZP_05543735.1| ATP-dependent RNA helicase [Parabacteroides sp. D13] gi|149937917|gb|ABR44614.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503] gi|256739144|gb|EEU52468.1| ATP-dependent RNA helicase [Parabacteroides sp. D13] Length = 610 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 196/353 (55%), Gaps = 14/353 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + I +A+ E GY + VQE ++ P L + DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEELGVAAPILKAIQEMGYESPMPVQEEVI-PFLLGEDNDVIALAQTGTGKTAAYGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 + + P AL + PTREL +Q+ +L Y+K + V GG S+ Sbjct: 60 PILQKINVSQ------YQPQALILCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + L+ G H+VV TPGRL D + K +++S++K V+LDEADEML++GF D I IL Sbjct: 113 ESQIKTLKRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 + P+ R ML+FSAT+ I ++ K Y KD + I +N + +I +V D+ A Sbjct: 173 AIPENRNMLLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + + Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRLADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 ++ +ATDVAARG+D+ DL VI+ L E+ HR GRTGRAG+ G+++ + Sbjct: 293 IQLLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISI 345 >gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2] gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2] Length = 484 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 204/367 (55%), Gaps = 16/367 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A++E GY T +Q + P L +DVL AQTG+GKT AF L + + L Sbjct: 11 PKVL-KAVTETGYDTPTPIQAGAIAPALEGRDVLGIAQTGTGKTAAFTLPMITLLGRGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L +APTRELA QV + T + A+ IGG S + + + G + Sbjct: 70 R---ARMPRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQDKIIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH+ L ++ +K +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-------LSDRDNAIVNILR 240 T++P I + + + ++ +A +++I V+ S++ + ++ Sbjct: 187 TMAPEIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPSEKRELLRKLID 246 Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G NAI+FC+ ++ V K L ++ +Q + G+L Q R+ L RD R+ Sbjct: 247 AEGEACTNAIIFCNRKSDVDIVAKSLNKYGYQAAPIHGDLDQSHRTKTLDKFRDNELRIL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQ--RR 355 +A+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++ + Sbjct: 307 VASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGTAIMICVPRDEKNLED 366 Query: 356 AERLFRE 362 ERL +E Sbjct: 367 VERLVKE 373 >gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3] gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3] Length = 530 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 70 -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPDTHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 V AP+++ E QR++ + L +I+ D K++ + +L ++D + A L Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Carnobacterium sp. AT7] gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Carnobacterium sp. AT7] Length = 483 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 143/505 (28%), Positives = 247/505 (48%), Gaps = 68/505 (13%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+ Y + T VQE ++ L KDV+V +QTGSGKTV++G+ L T+ E ++ Sbjct: 16 IVTALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLCETVDWEENK-- 73 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L + PTRELA+QV +L + V G S ++ +L+ +HIVVG Sbjct: 74 ----PQVLVLVPTRELAIQVKEDLMNIGRLKRVKATAVYGKASFDTQKSELKQKSHIVVG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH++ + + +VLDEADEML++GF D +E I++ P +R+ L+FSAT+ Sbjct: 130 TPGRVLDHLQKGTFKVEKIDCLVLDEADEMLNMGFADQVEAIINFLPAERQTLLFSATMP 189 Query: 191 PAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +A Y K D + I + I +V V ++ ++++L A + ++ Sbjct: 190 KEIERIASFYMKQDKQSIVIETTELSKPKIIQSSVKVQEDKKEQQLLDLLTVENADSCMI 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ +V+ L + + + G + Q++R + + R GR R +ATDVAARGID Sbjct: 250 FCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVATDVAARGID 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + ++ V++ ++ E+ +HR+GRTGRAG+ GM++ ++ ++ + A +V+ Sbjct: 310 IENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNEVKAYAGQTVIE 369 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P+ R++Q H+ Sbjct: 370 VSLPTT---------RLVQS----------------------------------HKTSFG 386 Query: 430 AP-EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 +E P+ V ++ RD ++ + F G G K+K A + + Sbjct: 387 KKLQERPPLKQVRSKELNRDITKVY---------FNG--------GKKKKMRAVDFVGTI 429 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513 + GIN IG I +Q ++T++++ Sbjct: 430 AKIPGINADDIGIITIQENVTYIDI 454 >gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str. Zhang] gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str. Zhang] Length = 502 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 7/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ G+ T +Q + L KDV+ AQTG+GKT AFGL + + + DR Sbjct: 14 KAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQNI-DKADR---- 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL I+PTRELA+Q EL L + V GG + R+ R L IVVGTP Sbjct: 69 -SIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLSEHPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L + +LK +VLDEADEMLD+GF DDIE I++ P R+ L+FSATI + Sbjct: 128 GRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATIPAS 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L + + V V I ++ ++ V ++ + + + A++F Sbjct: 188 IMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V T+ L ++ + G+L+QQ+R + L+ + G+ +ATDVAARG+D+ Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + V + ++ +P++ +HR GRTGRAG KG+SV FV P ++ Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIE 349 >gi|146311795|ref|YP_001176869.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638] gi|145318671|gb|ABP60818.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638] Length = 457 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 10/370 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L+E GY+ +T VQ A L L +DV V A+TGSGKT AFGL L + + Sbjct: 10 LPAAQLDNLNELGYLAMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQQI--DA 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 F S L + PTRELA QV EL L + ++ +C GG +R LQ+ Sbjct: 68 GLFQTQS----LVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHP 122 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HI+V TPGRL DH++ +++ L+ +V+DEAD MLD+GF D I+ ++ +P R+ L+ Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPATRQTLL 182 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT AI ++ Q++ + I S + S I+ + + + + +L H Sbjct: 183 FSATWPEAIAAISGRVQQNPATIEIDSVDALPS-IEQQFYETSQKGKIPLLQKLLSQHQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VFC+T+ + L E +AL G+L Q++R L +G ARV +ATDVA Sbjct: 242 ASCVVFCNTKKDCQAVCEALEEAGQSALALHGDLEQRDRDQTLIRFANGSARVLVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ LELV++ EL+ +PE +HR GRT RAG G+++ + +RA L Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISLCAPEEAQRANILSEMLQ 361 Query: 365 VSVVWEPAPS 374 + + W APS Sbjct: 362 LKLNWMSAPS 371 >gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM] gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM] Length = 552 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 191/351 (54%), Gaps = 12/351 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +A+ E GY + T +Q + P L +DVL AQTG+GKT +F L + S L Sbjct: 8 NLNAKVLKAIDEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLSLLARG 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R A P +L + PTRELA QV + + A+ IGGVS + + + G Sbjct: 68 RAR---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQEQIIDKGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH L +S +K +V+DEAD MLD+GF DIE I +P R+ L F Sbjct: 125 DVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNI 238 SAT++P I + + + RV +A + I+ V+ S RD N + + Sbjct: 185 SATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKGSRRDREASEKRNVLRKL 244 Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 + G K NAI+FC+ + V K L ++ + + G+L Q +R+ L+ R G R Sbjct: 245 IDAEGDKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTRTLESFRAGDLR 304 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +A+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G ++ + Sbjct: 305 FLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAMMI 355 >gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum CMR15] Length = 481 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 129/346 (37%), Positives = 197/346 (56%), Gaps = 12/346 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I AL+E GY T +Q A + + +DV+ +AQTG+GKT F L + LL + + Sbjct: 12 ILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQNLLPDASTSA 71 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA QV + T + AV GGV ++ + L+ G ++ Sbjct: 72 SPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTEQLRRGVEVL 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF D++ I++ P R+ L+FSAT Sbjct: 132 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245 SP I LA +Y + + +A N ++ R V+ + D + A+V++LR + Sbjct: 192 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 249 Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVF +++ SR + L A+ G+ +Q ER L+ + G V +ATD Sbjct: 250 LPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGTVDVLVATD 309 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346 VAARG+D+ + VI+ +L N E+ +HR GRTGRAG G +S+F Sbjct: 310 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 355 >gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25] gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25] Length = 644 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 160/515 (31%), Positives = 263/515 (51%), Gaps = 29/515 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L D L AQTG+GKT AF L L + + N R Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKI-DLNQR----- 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GA ++VGTP Sbjct: 74 KPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKSGAQVIVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I + L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P Sbjct: 134 GRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + + + ++ V V++A +N + + +V ++D A+ +L +IVF Sbjct: 194 LKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + + Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQL 373 Query: 370 EPAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 V R E +A++ + LD +K+ L DP +AA L+ Sbjct: 374 PLRDQVAEARLAKLGAELEAEK---EHKALDKFAELVEKLQTSL--DIDPATLAAMLLKR 428 Query: 424 H---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQK 478 R E+ P+ RD+ + + G NF W + L VG +Q Sbjct: 429 QQGKRPLFYIGED--PMVEAIERDK-QRRKERREGGRDGGRNFNNQDWDTYQLQVGREQG 485 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + ++ L G+ + SIGAI++ TFV++ Sbjct: 486 VQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 520 >gi|229035098|ref|ZP_04189045.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271] gi|228728283|gb|EEL79312.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271] Length = 481 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 126/382 (32%), Positives = 204/382 (53%), Gaps = 9/382 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPKDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + +I + I+FC T Sbjct: 192 EKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDITMIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + E AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKELAP 371 Query: 374 SVEAIRERDA---QRILQDPLF 392 S E + + A ++I P+ Sbjct: 372 SKEEVMKGKAIFEEKIYAKPII 393 >gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119] gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus hominis subsp. hominis C80] gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119] gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus hominis subsp. hominis C80] Length = 503 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 192/342 (56%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L E G+ T +Q+ + L KD+L AQTG+GKT AFG+ L ++ + Sbjct: 15 KTLEEMGFKEPTPIQKESIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGK------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S AL +APTRELA+QV +L + V GG+ + R+ + L+ G IVVGTP Sbjct: 68 SGVQALILAPTRELAMQVAEQLREFSRGQNIQVVTVFGGMPIDRQIKALKRGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI TL + + K V + ID +V ++ + N L H + AIVF Sbjct: 188 AIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri 100-23] gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri 100-23] Length = 497 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 186/341 (54%), Gaps = 7/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +QE + L KDV+ AQTG+GKT AFGL + + EN Sbjct: 14 KAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTENPNIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ I+PTRELA+Q EL L V V V GG + R+ + L+ I+VGTP Sbjct: 72 ----AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI + + H+K +VLDEADEML++GF +DIE I+ +P R+ L+FSAT+ P Sbjct: 128 GRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPE 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + D V I ++ +D V ++ + + ++ IVF Sbjct: 188 IKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V +K L + + G+L+Q +RS + ++ + +ATDVAARG+D+ Sbjct: 248 TKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ S+P++ +HR GRTGRAG G+S+ FV P M Sbjct: 308 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 348 >gi|148543481|ref|YP_001270851.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus reuteri DSM 20016] gi|184152890|ref|YP_001841231.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112] gi|227363631|ref|ZP_03847746.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri MM2-3] gi|227544701|ref|ZP_03974750.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri CF48-3A] gi|300909057|ref|ZP_07126520.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112] gi|325681826|ref|ZP_08161345.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A] gi|148530515|gb|ABQ82514.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM 20016] gi|183224234|dbj|BAG24751.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112] gi|227071342|gb|EEI09650.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri MM2-3] gi|227185302|gb|EEI65373.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri CF48-3A] gi|300894464|gb|EFK87822.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112] gi|324978917|gb|EGC15865.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A] Length = 498 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 151/481 (31%), Positives = 233/481 (48%), Gaps = 31/481 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +QE + L KDV+ AQTG+GKT AFGL + + EN Sbjct: 14 KAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTENLNIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ I+PTRELA+Q EL L V V V GG + R+ + L+ I+VGTP Sbjct: 72 ----AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI + + H+K +VLDEADEML++GF +DIE I+ +P R+ L+FSAT+ P Sbjct: 128 GRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPE 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + D V I ++ +D + ++ + + ++ IVF Sbjct: 188 IKRIGVQFMSDPETVRIKAKELTTDLVDQYYIRARDYEKFDIMTRLIDVQDPDLTIVFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V +K L + + G+L+Q +RS + ++ + +ATDVAARG+D+ Sbjct: 248 TKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369 + V + ++ S+P++ +HR GRTGRAG G+S+ FV P M E+L R + + Sbjct: 308 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVRMLPL-- 365 Query: 370 EPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR--IHRA 426 +P + EA + + A D L ++ + LL H+ + A L A Sbjct: 366 KPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETHNATDLVAALLNNMTKEA 425 Query: 427 GLCAPEEITPVSLV-----------------SGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469 P +ITP + G R + R + GGG R++ G S Sbjct: 426 ASEVPVKITPERPLPRRNKRNNRNGNRNNSHGGNHYRRKNFRRHQHGGGHRNDNHGKSHS 485 Query: 470 S 470 S Sbjct: 486 S 486 >gi|317010528|gb|ADU84275.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7] Length = 494 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 202/363 (55%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + + +QE + L+ +DV+ AQTG+GKT AF L + + L N Sbjct: 35 KSVYEAGFTSPSPIQEKAIPAILQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 91 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ E+ L T GG SV ++ ++ +++ TP Sbjct: 92 ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 147 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + ++ K VVLDE+DEMLD+GF DDIE I D P + ++L+FSAT+ Sbjct: 148 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 207 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA ++ ++++IA N ++DI R ++ +R AI+ +L + +IVF Sbjct: 208 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMRLLDTQAPEKSIVFTR 267 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L ++ AL G++ Q++R ++ + A V +ATDVA+RG+D+ Sbjct: 268 TKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 327 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V + L N E+ +HR GRTGRAG+KGM++ ++ + R+ +E + + Sbjct: 328 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 387 Query: 373 PSV 375 P++ Sbjct: 388 PTI 390 >gi|323524408|ref|YP_004226561.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1001] gi|323381410|gb|ADX53501.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001] Length = 467 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 130/332 (39%), Positives = 193/332 (58%), Gaps = 8/332 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GYV +T +Q A L L D++ A+TGSGKT AF LAL + L A +F A Sbjct: 24 LTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--KF----A 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ + V GG + + L++GAHIVVGTPG Sbjct: 78 VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGAHIVVGTPG 137 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI ++ PK+R+ L+FSAT I Sbjct: 138 RIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTLLFSATYPEGI 197 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V +A E + I R V+ +R +A+ +L ++ + + FC+T Sbjct: 198 VKLSQQFLRNPKEVKLA-ERHDDTKIRQRFYEVSEDERLHAVGLLLNHYRPVSTLAFCNT 256 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 257 KQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 316 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 E VI+ +++ +PE +HR GRTGRA ++G ++ Sbjct: 317 EAVINVDVTPDPEVHVHRIGRTGRADQEGWAL 348 >gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC 53608] Length = 497 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 186/341 (54%), Gaps = 7/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +QE + L KDV+ AQTG+GKT AFGL + + EN Sbjct: 14 KAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTENPNIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ I+PTRELA+Q EL L V V V GG + R+ + L+ I+VGTP Sbjct: 72 ----AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI + + H+K +VLDEADEML++GF +DIE I+ +P R+ L+FSAT+ P Sbjct: 128 GRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPE 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + D V I ++ +D V ++ + + ++ IVF Sbjct: 188 IKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V +K L + + G+L+Q +RS + ++ + +ATDVAARG+D+ Sbjct: 248 TKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ S+P++ +HR GRTGRAG G+S+ FV P M Sbjct: 308 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 348 >gi|283779400|ref|YP_003370155.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi DSM 6068] gi|283437853|gb|ADB16295.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068] Length = 458 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 191/350 (54%), Gaps = 8/350 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY T +Q ++ L DV+ A+TG+GKT +F + + L E A Sbjct: 26 ALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILELLDIERG----AP 81 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV E+ L + A GG + + L+ G H+VVGTPG Sbjct: 82 TPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGKPIKSQVDKLKKGCHVVVGTPG 141 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI ++ +H++ VVLDEAD MLD+GFR DIE IL P++R+ L+ SAT+ P I Sbjct: 142 RVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQTLLLSATVPPPI 201 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ Y + +N + + I+ + V + + ++ +L K AIVFC T Sbjct: 202 AKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLLLREEPKQAIVFCRT 261 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + L A+ G+LSQ +R + RDG R +ATDV RGID+ + Sbjct: 262 KRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVATDVIGRGIDVSTV 321 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP---QNMQRRAERL 359 +++ ++ ++ +HR GRTGR GR+G++ FV P + R ER+ Sbjct: 322 SHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEERI 371 >gi|119946353|ref|YP_944033.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37] gi|119864957|gb|ABM04434.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 462 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 131/332 (39%), Positives = 190/332 (57%), Gaps = 9/332 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L KDV+ +TGSGKT AFGL L L + R Sbjct: 19 LESLGYHVMTPIQAQSLPHVLAGKDVIAQGKTGSGKTAAFGLGLLEKLSVKRFRIQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QVG+EL L A+T + V GGV + L++GAHI+VGTP Sbjct: 75 --SLILCPTRELADQVGKELRRL-ARTIHNIKVLTLCGGVPFGPQIGSLEHGAHIIVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R L + L+ +VLDEAD MLD+GF+ I+ I+D +PKKR+ L+FSAT Sbjct: 132 GRIEDHLRKGTLRLDDLEVLVLDEADRMLDMGFQASIDAIIDQAPKKRQTLLFSATFPEK 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +AK D + V S++ + + DR A+ +L+ + ++++VFC+ Sbjct: 192 INNIAKRIMTDPIMVKAESKHDDSVIAQHFYKVENSQDRMIALRLLLQKYQPESSVVFCN 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V LA F +AL G+L Q++R AL + A + +ATDVAARG+D+ + Sbjct: 252 TKKEVQEVADELANRGFSALALHGDLEQKDRDQALIRFANKSASILVATDVAARGLDIDN 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 L V + ++ + E +HR GRTGRAG KG++ Sbjct: 312 LSAVFNYHIAHDQELHVHRIGRTGRAGNKGLA 343 >gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334] gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23] gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334] gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23] gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W] gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II] Length = 502 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 7/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ G+ T +Q + L KDV+ AQTG+GKT AFGL + + + DR Sbjct: 14 KAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQNI-DKADR---- 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL I+PTRELA+Q EL L + V GG + R+ R L IVVGTP Sbjct: 69 -SIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLSEHPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L + +LK +VLDEADEMLD+GF DDIE I++ P R+ L+FSATI + Sbjct: 128 GRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATIPAS 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L + + V V I ++ ++ V ++ + + + A++F Sbjct: 188 IMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V T+ L ++ + G+L+QQ+R + L+ + G+ +ATDVAARG+D+ Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + V + ++ +P++ +HR GRTGRAG KG+SV FV P ++ Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIE 349 >gi|262383201|ref|ZP_06076338.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B] gi|298373901|ref|ZP_06983859.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_19] gi|262296079|gb|EEY84010.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B] gi|298268269|gb|EFI09924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_19] Length = 609 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 196/353 (55%), Gaps = 14/353 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + I +A+ E GY + VQE ++ P L + DV+ AQTG+GKT A+GL Sbjct: 1 MKTFEELGVAAPILKAIQEMGYESPMPVQEEVI-PFLLGEDNDVIALAQTGTGKTAAYGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114 + + P AL + PTREL +Q+ +L Y+K + V GG S+ Sbjct: 60 PILQKINVSQ------YQPQALILCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + L+ G H+VV TPGRL D + K +++S++K V+LDEADEML++GF D I IL Sbjct: 113 ESQIKTLKRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 + P+ R ML+FSAT+ I ++ K Y KD + I +N + +I +V D+ A Sbjct: 173 AIPENRNMLLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + + Y+ I+FC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRLADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 ++ +ATDVAARG+D+ DL VI+ L E+ HR GRTGRAG+ G+++ + Sbjct: 293 IQLLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISI 345 >gi|332703129|ref|ZP_08423217.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 532 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 159/525 (30%), Positives = 255/525 (48%), Gaps = 44/525 (8%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + +Q + + +DV+ AQTG+GKT AFG+ + + P Sbjct: 17 KAIEDMGFEEASPIQALAIPLVMAGRDVVGQAQTGTGKTAAFGIPILEAV-------DPR 69 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 S L AL + PTRELA+QV EL L K + V GG + R+ + L+ G IV+G Sbjct: 70 SHDLQALVLCPTRELAIQVAEELNTLAKYKLNLRVLPVYGGQPIDRQFKALRQGVQIVIG 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ L + ++ VVLDEADEMLD+GFR+DIE ILD P++R+ + FSAT+ Sbjct: 130 TPGRVMDHMERGTLKLGKVRMVVLDEADEMLDMGFREDIERILDDVPEERQTIFFSATMR 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA+ Y V ++ + +++ V R A+ I+ ++ K +VF Sbjct: 190 PEIMRLAEKYLDKPEFVKVSHKVLTVPNVEQIYYEVPRFGRLEAMCRIIDFYNPKLTVVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +T+ V + L + L G+++Q +R + R G + IATDVAARGID+ Sbjct: 250 ANTKKGVDELVEHLQARGYMADGLHGDMNQAQRDRVMAKFRAGSIEILIATDVAARGIDV 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D+E V + ++ S+ E +HR GRTGRAGR G + + + R +V Sbjct: 310 EDIEAVFNYDIPSDVEYYVHRIGRTGRAGRSGRAFTFASGKEFYKLRDIQRFTKAKIVQH 369 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG----FLRIHRA 426 P+V + + ++ FL +++ E IA G +LRI + Sbjct: 370 KVPTVTDVEQARTEK------FLAAVR----------------ETIAEGGIDKYLRIAQE 407 Query: 427 GLCAPEEITPVSLVS-------GRDRFRDDSR-AFKVGGGSRDNFKGSSWFSLSVGSKQK 478 + +E T + L + G + S+ V G G ++VG + K Sbjct: 408 FVEEEQEATTLDLAAALLKMLMGTTEEPEKSKPGTPVKYGDTGAEPGMVRLFMNVGRRLK 467 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDLLR 522 + ++ + +G+ + IG I + TFVEV + D+LR Sbjct: 468 IGVKDVVGAIAGETGMPGRLIGKIEIYDKFTFVEVPEEYAEDVLR 512 >gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar sotto str. T04001] gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar sotto str. T04001] Length = 510 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 140/434 (32%), Positives = 236/434 (54%), Gaps = 30/434 (6%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + A + Sbjct: 2 GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE------AVQGI 55 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTPGR+ DH Sbjct: 56 VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDH 115 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ I +A+ Sbjct: 116 INRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAE 175 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + + + + ++ +I + V + + + +L + AIVF T+ V Sbjct: 176 RFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVD 235 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ + V + Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYN 295 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANVSVVWEP 371 ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R V Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR-------KVDRME 348 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAG 427 AP+++ E QR++ + L +IQ + K++ + +L ++D + A L++ Sbjct: 349 APTLDEALE-GQQRLIAEKL-QSTIQNENLSYYKRIAEEMLEENDSVTVVAAALKM---- 402 Query: 428 LCAPEEITPVSLVS 441 + + TP++L S Sbjct: 403 MTKEPDTTPIALTS 416 >gi|298484971|ref|ZP_07003069.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160525|gb|EFI01548.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 473 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 33 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 89 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 90 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 146 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 147 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 206 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 207 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFC 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 264 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 324 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 382 >gi|330976959|gb|EGH76980.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 459 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 19 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 76 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 192 Query: 194 TTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V+V + Q I Y ++ R A+V +L + + + FC Sbjct: 193 KQLSSKFMRDPQIVKVEALHADSQIEQIFYE---ISPEQRLEAVVKVLGHFRPTSCVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLDQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368 >gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4] gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121] gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4] gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121] Length = 591 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 170/554 (30%), Positives = 281/554 (50%), Gaps = 44/554 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +ALS+ GY + + +Q A + P L KDV+ AQTG+GKT AF + + S + + Sbjct: 24 KALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLSRIDTSIKQTQ-- 81 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV A G+ V GG S + L+ GAH+VVGT Sbjct: 82 ----ALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGLRRGAHVVVGT 137 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++++LK +VLDEADEML +GF++D+E IL +P +++ +FSAT+ Sbjct: 138 PGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILRDTPGDKQVALFSATMPG 197 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 +I ++K Y + V + + S+ S+I R + VA + +A+ +L + I+F Sbjct: 198 SIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVLEVEAFEAMIIFV 257 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L A++G++ Q +R + +++G + +ATDVAARG+D+ Sbjct: 258 RTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVATDVAARGLDVD 317 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVV 368 + V++ ++ + E+ +HR GRTGRAGR+G + +FV P +++ + E+ R+ + Sbjct: 318 RISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSIEKATRQPLAEMQ 377 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPE--KIAA 418 PSV+ + +AQR+ + F DSI +KM++ +HD IAA Sbjct: 378 L---PSVDDV---NAQRVAK---FGDSITESLASENLAMFRKMIEDYDQEHDVPLIDIAA 428 Query: 419 GFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---NFKGSSWFSLSV 473 R G E R R F G R + + + ++V Sbjct: 429 ALALQSRDGEAFLLSPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQELAAYRIAV 488 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDK 529 G + + ++ + G+ R G I ++PD + VE+ AD ++ LRRT Sbjct: 489 GKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEALRRTRISGV 548 Query: 530 GIQLKYLGGEKPDF 543 IQL +PDF Sbjct: 549 LIQL------QPDF 556 >gi|261402374|ref|YP_003246598.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius M7] gi|261369367|gb|ACX72116.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius M7] Length = 404 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 204/366 (55%), Gaps = 20/366 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64 N+ + A+ +G+ T +Q ++ L EK+++ A+TGSGKT +F L L + Sbjct: 12 NLSENTLNAVRNKGFEKPTDIQTKVIPLFLNGEKNIVAQARTGSGKTASFALPLIELI-- 69 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + A+ + PTRELA+QV E+ L + + GG + + + L+N Sbjct: 70 -----NEGEGIKAIILTPTRELAIQVADEINSLKGNKNLKIVKVYGGTPIQPQIKYLKN- 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A+IVVGTPGR+ DHI LN+ ++ +LDEADEML++GF DD+E IL++ K RR+L+ Sbjct: 124 ANIVVGTPGRVLDHINRGTLNLKDVEYFILDEADEMLNMGFIDDVEKILNACNKNRRILL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241 FSAT+ I LAK Y D V ++++DI+ + V + R + ILR + Sbjct: 184 FSATMPVEILNLAKKYMNDYEFVRA----KRNADIEQTFIEVDENKRFETLCRILRDRNF 239 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +G +VFC T+ +L + F+ A+ G+L Q +R +++ + R ++ IAT Sbjct: 240 YG----LVFCKTKKDTKDLANMLRDIGFKAGAIHGDLKQHQREKVVRLFKQKRIKILIAT 295 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DV +RGID+ DL V++ L PE +HR GRTGRAG+KG ++ +I + R+ + + R Sbjct: 296 DVMSRGIDVNDLSHVVNYHLPQTPEAYMHRIGRTGRAGKKGKAISIINRKEYRKLKHIER 355 Query: 362 EANVSV 367 + + Sbjct: 356 TMKLKI 361 >gi|200386509|ref|ZP_03213121.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603607|gb|EDZ02152.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 629 Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ +GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMSGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera] Length = 786 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 137/436 (31%), Positives = 227/436 (52%), Gaps = 59/436 (13%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + E+L +RG +L +Q A+L P L +D++ A+TG+GKT+AFG+ + L ++ Sbjct: 123 LPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDD 182 Query: 67 DRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121 ++ + P L +APTRELA QV +E++ + VC+ GGVS ++ L Sbjct: 183 EKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYITQQNAL 239 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G +VVGTPGR+ D I+G L + ++ +VLDEAD+ML +GF +D+E IL+ P +R+ Sbjct: 240 SRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPSERQ 299 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIAS----------------ENRQH-SDID---- 220 ++FSAT+ + LA+ Y + + +++ + + H D D Sbjct: 300 SMLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTLDHVGDHDEKLA 359 Query: 221 -----YRAVLVALSDR----DNAIVNILR-----------YHGAKNAIVFCSTRASVSRF 260 Y A S R D NI++ Y IVF T+ Sbjct: 360 EGIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIVFTQTKRDADEV 419 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL----- 315 + L + AL G++SQ +R L R G+ V +ATDVAARG+D+P+++L Sbjct: 420 SMALTNSIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLKYVDL 478 Query: 316 ----VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +IH EL ++PE +HRSGRTGRAG++G ++ + + +R + L R+ + Sbjct: 479 LFLQIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGCKFEFIS 538 Query: 372 APSVEAIRERDAQRIL 387 P++E + E A++++ Sbjct: 539 PPAIEEVLESSAEQVV 554 >gi|143636073|gb|ABO93350.1| vasa-like protein [Hydractinia echinata] Length = 680 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 127/331 (38%), Positives = 187/331 (56%), Gaps = 8/331 (2%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF----SPASAP 75 Y+ T VQ+ + L ++D++ AQTGSGKT AF L + ++++ D+ S AP Sbjct: 243 YLKPTPVQKYAIPIILGDRDLMSCAQTGSGKTAAFLLPVLASIMQHKDQLTSQLSEVQAP 302 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 L L IAPTRELA Q+ +E +T V V GGVSV + R +Q+G H++VGTPGRL Sbjct: 303 LGLIIAPTRELANQIYQEARKFSFQTSVRPVVVYGGVSVAYQLRQVQSGCHLLVGTPGRL 362 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISP 191 D I + +++ +LK +VLDEAD MLD+GF D++ I+ + + R LMFSAT Sbjct: 363 KDFIGKRKISLENLKYLVLDEADRMLDMGFMPDVKEIIHGFGMPAKEDRHTLMFSATFPE 422 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + + V + I HSDI+ + V + + + +V +L G +VF Sbjct: 423 EIQKLAGEFLNNYVFLTIGKVGSTHSDIEQTVIEVDNASKRDKLVEMLGQEGGNKNLVFV 482 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L ++ F ++ G+ QQ+R AL+ R G+ V IAT VAARG+D+ Sbjct: 483 QTKRQADFLASYLCQNGFPTTSIHGDRFQQQREEALREFRAGQQTVLIATAVAARGLDIA 542 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 D++ VI+ +L E +HR GRTGR G KG Sbjct: 543 DVKQVINYDLPDEIEEYIHRIGRTGRIGNKG 573 >gi|109896916|ref|YP_660171.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c] gi|109699197|gb|ABG39117.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c] Length = 459 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 134/390 (34%), Positives = 211/390 (54%), Gaps = 16/390 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L G+ +T +Q L L +DV+ A+TGSGKT AFGLAL L + R Sbjct: 18 LQSMGFSQMTEIQAGTLPAILEGRDVVAKAKTGSGKTAAFGLALLHNLDVKRFRVQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV E+ L + V GG + + L++GAHI+VGTPG Sbjct: 74 --ALVMCPTRELAEQVALEIRRLGRGIHNIKVLTLCGGTPMGPQIGSLEHGAHIIVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ + L++S + +VLDEAD MLD+GF D+++ ++ S P++R+ L+FSAT +I Sbjct: 132 RIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPEQRQTLLFSATYPDSI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIVFC 251 ++ QK + V + S H V + D R A+ +L ++ ++AIVFC Sbjct: 192 AAISGQVQKSPLEVTVES---THDTDTIEQVFFEVEDAHRTKAVAALLSHYQPESAIVFC 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q+ER+ L + A V +ATDVA+RG+D+ Sbjct: 249 NTKIACQEVADELQSMGVSVLALHGDLEQRERNQVLVRFANKSASVLVATDVASRGLDIK 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 ++ VI ++ +PE +HR GRTGRA KG+++ ++ + RA + + W Sbjct: 309 EVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEMARANAIEDYQKAKLKW-- 366 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEK 401 ++A+R A R++Q + G +K Sbjct: 367 -TGIQAMRFH-ANRLIQPQYSTLCVDGGKK 394 >gi|170766108|ref|ZP_02900919.1| cold-shock DEAD box protein A [Escherichia albertii TW07627] gi|170125254|gb|EDS94185.1| cold-shock DEAD box protein A [Escherichia albertii TW07627] Length = 627 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLSKR 382 >gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701] gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701] Length = 645 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 202/340 (59%), Gaps = 10/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY + + +Q+A + + +D++ AQTG+GKT AF L L + R P Sbjct: 99 AVADCGYSDPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLA-------RLDPQQ 151 Query: 74 -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 P L + PTRELA+QV AK V + I GG + L+ G IVVGT Sbjct: 152 RTPQVLVLTPTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKRGVQIVVGT 211 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L++S L+ +VLDEADEML +GF DD+E++L+ P++R++++FSAT+ Sbjct: 212 PGRVMDHMRQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQLPQQRQVVLFSATMPS 271 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L++ Y ++ V I + ++S I R ++V + + A+ +L ++ I+F Sbjct: 272 EIRRLSRKYLQNPAEVTIQQKGAENSTIRQRHLVVHGAQKLEALTRVLEAESSEGVIIFA 331 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A ++ L + + V L+G++ Q +R ++ +R G+ V +ATDVAARG+D+ Sbjct: 332 RTKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVATDVAARGLDVD 391 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + LVI+ ++ + E +HR GRTGRAGR+G ++ F+ P+ Sbjct: 392 RITLVINYDIPFDSEAYVHRIGRTGRAGRQGDAILFLTPR 431 >gi|332345119|gb|AEE58453.1| cold-shock DEAD box protein A [Escherichia coli UMNK88] Length = 629 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + +++ K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRHFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|283785363|ref|YP_003365228.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168] gi|282948817|emb|CBG88418.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168] Length = 457 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 141/387 (36%), Positives = 211/387 (54%), Gaps = 12/387 (3%) Query: 3 IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 I +P L E GY+++T VQ A L L +DV V A+TGSGKT AFGL L + Sbjct: 6 ILNVLPAAQLANLRELGYLSMTPVQAAALPAILAGQDVRVQAKTGSGKTAAFGLGLLQHI 65 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY--AKTGVVVAVCIGGVSVHRERRD 120 + F S L + PTRELA QV EL L ++ +C GG +R Sbjct: 66 --DAALFKTQS----LVLCPTRELADQVAGELRRLARSMPNTKILTLC-GGQPFGAQRDS 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 LQ+ HI+V TPGRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R Sbjct: 119 LQHAPHIIVATPGRLLDHLQKGTVSLEGLTTLVMDEADRMLDMGFSDAIDEVIRFAPASR 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT AI ++ Q+D V + I + + + I+ + + + + +L Sbjct: 179 QTLLFSATWPEAIAAISARVQRDPVTIEIDAVDALPA-IEQQFFETSTQGKIPRLQTLLS 237 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H + +VFC+T+ L +AL G+L Q+ER L +G ARV +A Sbjct: 238 LHQPASCVVFCNTKKDCQAVCDALNASGQSALALHGDLEQRERDMTLVRFANGSARVLVA 297 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359 TDVAARG+D+ LELV++ EL+ +PE +HR GRT RAG +G+++ F P Q RA L Sbjct: 298 TDVAARGLDIKALELVVNFELAWDPEVHVHRIGRTARAGNRGLAISFCAPAEAQ-RANIL 356 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI 386 +++ W AP+ AI+ +A+ + Sbjct: 357 AEMLQLTLNWCDAPTNMAIKPLEAEMM 383 >gi|163788491|ref|ZP_02182937.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium ALC-1] gi|159876811|gb|EDP70869.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium ALC-1] Length = 372 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 129/348 (37%), Positives = 195/348 (56%), Gaps = 13/348 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + L E N T +QE ++ P L E D++ AQTG+GKT AFGL + + D+ Sbjct: 15 KGLKELNIKNPTEIQETVI-PILLESNTDLIGLAQTGTGKTAAFGLPVLHAI----DK-- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 S AL IAPTREL Q+ ++L Y + GG + R+ + L HIV Sbjct: 68 NKSEVQALIIAPTRELVQQIQKQLFRFTKYIDGKIFAEGVYGGEKMDRQIKALTRATHIV 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + ++IS++K +VLDEADEML +GF++D+ IL + KKR +FSAT Sbjct: 128 VATPGRLLDLVERGAVDISNVKILVLDEADEMLSMGFKEDLNKILKYNTKKRNTWLFSAT 187 Query: 189 ISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 + I ++ KNY DAVRV + + +I + + + D+ N ++ IL + Sbjct: 188 MPDDIKSIIKNYMSPDAVRVEVNKNALVNENISHHYIQTNIKDKLNMVIRILEKRQDERG 247 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+A + L F V AL G++ Q+ER ++ ++ ++ ++TDV+ARG Sbjct: 248 IIFCRTKAGTKTLAQQLQHEGFAVGALEGDMQQKERDKVMRAFKNESLQILVSTDVSARG 307 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ID+ DL V+H +L + + HRSGRT RAG+ G S+ +IP MQ+ Sbjct: 308 IDVRDLSFVLHHQLPEHLDYYTHRSGRTARAGKTGQSIALIIPGEMQK 355 >gi|150017632|ref|YP_001309886.1| DEAD/DEAH box helicase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904097|gb|ABR34930.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 481 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 119/366 (32%), Positives = 199/366 (54%), Gaps = 6/366 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+S + LT VQE ++ L EKD++V ++TGSGKT ++ + + + E ++ Sbjct: 17 KAISMLNFKELTKVQEQVIPIALEEKDIVVKSKTGSGKTASYAIPICQLVDWEENK---- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL I PTRELA+QV + + + A G S + + ++L+ HIVVGTP Sbjct: 73 --PQALVITPTRELAIQVKEDFFNIGRFKRIKAAAIYGKSSFYDQEKELKQKTHIVVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI ++S +K +++DEADEML++GF + IE I+ S K+R ++ SAT+ Sbjct: 131 GRIIDHIEKGTFDLSKIKYLIIDEADEMLNMGFVEQIETIIKSLSKERVTMLLSATMPKD 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I TL Y KD + + I +N+ +I V ++ + + +I + ++FC+ Sbjct: 191 IETLCNKYMKDPIHIEIEEQNKAADNICQERYNVNELNKIDLLRDITILENPDSCMIFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V K LA+ + + G + Q +R + + G R IATDVAARGID+ + Sbjct: 251 TKQKVDEVYKELAKLQYDCRKIHGGMEQSDRLRVMNNFKLGYFRYLIATDVAARGIDIDN 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ + E+ +HR GRTGRAG+ G ++ + QN + + + + Sbjct: 311 ITHVINYDIPEDKESYVHRIGRTGRAGKMGRAITFVTQNESKFLNDIHEYIGKEIPLKER 370 Query: 373 PSVEAI 378 P VE + Sbjct: 371 PKVETV 376 >gi|300716861|ref|YP_003741664.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661] gi|299062697|emb|CAX59817.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661] Length = 459 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 133/345 (38%), Positives = 196/345 (56%), Gaps = 15/345 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY +T VQ A L L KDV A+TGSGKT AFGL + + + +F S Sbjct: 18 LNELGYHTMTPVQAAALPAILEGKDVRAQAKTGSGKTAAFGLGVLHRI--DVTQFVTQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV +EL L +A ++ +C GG + +R L + HIVVGTP Sbjct: 75 ---LVLCPTRELADQVAKELRRLARFAANIKILTLC-GGQPMGAQRDSLVHAPHIVVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH++ + L + + +VLDEAD ML++GFR+DIE I+ P R+ L+FSAT Sbjct: 131 GRILDHLKRETLKLDQIGTLVLDEADRMLEMGFREDIEEIIKYCPASRQTLLFSATWPQD 190 Query: 193 ITTLAKNYQKD--AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +++N Q++ AV ++ S+ ID R ++ A++ +L + +VF Sbjct: 191 IARISQNIQREPVAVETDVVSD---LPTIDQRFYEAGAREKLTALIGLLSDEKPSSCVVF 247 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ L +AL G+L Q++R L +G RV +ATDVAARG+D+ Sbjct: 248 CNTKRECDDVAYALDSAKISALALHGDLEQRDRDQVLIQFANGSCRVLVATDVAARGLDI 307 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 L +V++ +LS +PE +HR GRT RAG +G ++ FV P M R Sbjct: 308 KSLAMVVNYQLSFDPEVHVHRIGRTARAGAEGCAISFVAPDEMVR 352 >gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1] gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1] gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1] gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1] Length = 496 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 185/334 (55%), Gaps = 3/334 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T +Q+ + P L +DVL AQTG+GKT AF L + L A Sbjct: 15 AVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPILHRLSAGRSPPPAQG 74 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ L + PTRELA Q+ + TG+ AV GGV H + + L+ G +++ TP Sbjct: 75 RPIRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQEQTLRRGVDVLIATP 134 Query: 133 GRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL D + G+GL + L+ VLDEAD MLD+GF D++ I+ + P KR+ L FSAT+ P Sbjct: 135 GRLLD-LMGQGLVSYKALEVFVLDEADRMLDMGFIHDVKRIISALPPKRQTLFFSATMPP 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +LA+ K VRV + E+ ++ + V + + +V++L + A+VF Sbjct: 194 EIQSLAQGILKSPVRVEVTPESTTAETVEQKMFFVEREQKRHLLVHLLGDASIRRALVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R K LA A+ G SQ R AL +DG RV +ATD+AARGID+ Sbjct: 254 RTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSCRVLVATDIAARGIDIE 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ +L + PE+ +HR GRTGRAG G ++ Sbjct: 314 GITHVINFDLPNIPESYVHRIGRTGRAGAVGTAL 347 >gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94] Length = 516 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R + Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ + K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|110641577|ref|YP_669307.1| ATP-dependent RNA helicase DbpA [Escherichia coli 536] gi|110343169|gb|ABG69406.1| ATP-independent RNA helicase DbpA [Escherichia coli 536] Length = 457 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 203/367 (55%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAI 378 P+ +I Sbjct: 369 LPANSSI 375 >gi|254497847|ref|ZP_05110613.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12] gi|254352925|gb|EET11694.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12] Length = 584 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 124/348 (35%), Positives = 194/348 (55%), Gaps = 10/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N I +AL + + + +Q + L +D + AQTG+GKT AF L + Sbjct: 12 NFSDAINQALEDMKFTTPSPIQTQTIPLFLEGRDAIALAQTGTGKTAAFALPILQ----- 66 Query: 66 NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123 + +P AL +APTRELA+QV + E L A+ G VA GG R+ + L+ Sbjct: 67 --KITPNGQGTQALILAPTRELAIQVAEQFELLSARQHGTKVATLCGGQEYGRQLKQLRA 124 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA IVVGTPGR+ DHI L +S+L+ +LDEADEML +GF +DIE I+ P+++++ Sbjct: 125 GAQIVVGTPGRILDHIEKGTLQLSNLRTFILDEADEMLRMGFIEDIETIMAKLPEQKQIG 184 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I +A Y + + I SE I+ R + + + +A+V +L Sbjct: 185 LFSATMPHRIRQIANTYLNNPASIEIRSETATVKSIEQRFLFASGHQKPDALVRVLAVEE 244 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T++S ++L + + +A+ G+++Q R + R G + +ATDV Sbjct: 245 YQGVIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVATDV 304 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+ + VI+ +L + E +HR GRTGRAGR G+++ FV P+ Sbjct: 305 AARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPK 352 >gi|104773512|ref|YP_618492.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 483 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 227/465 (48%), Gaps = 15/465 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ G+ T +Q + L +DV+ AQTG+GKT AFGL + L D Sbjct: 12 ILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPILQKL----DLDK 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A A+ I PTRELA+Q EL L V V GG + R+ RDL+ I+VG Sbjct: 68 QEQAIQAIVIEPTRELAIQTQEELFRLGRDEKAKVQVVYGGADIGRQIRDLKKVPEILVG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K + + +K VVLDEADEMLD+GF DIE IL + + + L+FSAT+ Sbjct: 128 TPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMP 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L + + D V I ++ ID V V +++ + + ++ A+VF Sbjct: 188 KPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVF 247 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V T+ L + + G+L+Q R L+ ++G + +ATDVAARG+D+ Sbjct: 248 GRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI 307 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSV 367 + V + ++ +P++ +HR GRTGRAG+ GMSV FV P + R E L ++ + Sbjct: 308 SGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTIEDLTKKKMSPL 367 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLRIH 424 P +A + Q +L+ D + GD K D LL + E IAA L+ Sbjct: 368 --RPPTDAQAFAGQMKQAVLK---VDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLKEL 422 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469 ITP + R + NFKG F Sbjct: 423 SNDSEVKVTITPENPHPYRGKHSGGRGRGSRSRSGNKNFKGKRNF 467 >gi|325262198|ref|ZP_08128936.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5] gi|324033652|gb|EGB94929.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5] Length = 481 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 124/371 (33%), Positives = 200/371 (53%), Gaps = 6/371 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E+L+ GY TS+Q+ ++ P L K+V+V A TGSGKT AF + + + E + Sbjct: 14 ILESLNGLGYKEPTSIQQEVILPMLAGKNVVVKAPTGSGKTAAFAIPICENICWEEN--- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP AL + PTRELAVQV E+ ++ K + V GG + ++ + L+ +HIV G Sbjct: 71 ---APQALILEPTRELAVQVSEEMFYIGRKKRLKVPALFGGFPIDKQIQTLRQKSHIVTG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ + LN+ ++ +V+DEAD MLD+GF D+++ IL P R+ +FSAT+ Sbjct: 128 TPGRIMDHLGRESLNLEKVRWLVIDEADLMLDMGFIDEVKKILSMVPTDCRISLFSATLK 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I L + D V ++ N Q + I + ++ + + IL ++ ++F Sbjct: 188 PEIQELVDEFIPDMTIVMQSATNEQVAAITEKLYFTDQENKYDTFLEILINENPQSCMIF 247 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TR + + L L GE+ Q+ER + R G R IATDVAARGID Sbjct: 248 CGTREMTNVLFQKLRRRRIFCGMLHGEMEQRERLKTVDAFRRGCFRFLIATDVAARGIDF 307 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + V++ + S E +HR GRTGR G+ G ++ ++ + +R ++ A + + Sbjct: 308 EQITHVVNYDFPSKKETYVHRIGRTGRNGKCGTAISLVTEEDKRMLRQVEEYAGRQLPFT 367 Query: 371 PAPSVEAIRER 381 P ++ +E+ Sbjct: 368 ELPVLDEEKEK 378 >gi|323977024|gb|EGB72111.1| DEAD/DEAH box helicase [Escherichia coli TW10509] Length = 457 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 IT ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 ITAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|163735815|ref|ZP_02143244.1| putative ATP-dependent RNA helicase, putative [Roseobacter litoralis Och 149] gi|161390901|gb|EDQ15241.1| putative ATP-dependent RNA helicase, putative [Roseobacter litoralis Och 149] Length = 433 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 199/355 (56%), Gaps = 4/355 (1%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE N+P + L G + T +Q+ + + +DV+ AQTG+GKT AFG+ L Sbjct: 1 MSDFEMMNLPPELVARLGRMGLNDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + +L + R +P S L +APTRELA Q+ L T V VA+ +GG S++ + Sbjct: 61 VAQMLELDGRPAPKSV-RGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQI 119 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ G ++V TPGRL D + + + + +VLDEAD+MLD+GF D+ I PK Sbjct: 120 KRLERGVDLLVATPGRLLDLMDRRAVRLDETVFLVLDEADQMLDMGFIHDLRKIASVIPK 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT+ + LA +Y + +RV ++ + + +A S++ ++ + Sbjct: 180 ERQTMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAKSEKSALLIEM 239 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L H + A+VF T+ + K L + + ++ G SQ +R A+ + G +V Sbjct: 240 LDKHREERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVL 299 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARG+D+PD++ V + +L + PEN +HR GRT RAG+ G ++ F P M Sbjct: 300 VATDVAARGLDIPDVKHVYNYDLPNVPENYVHRIGRTARAGKDGAAIAFCAPDEM 354 >gi|325268230|ref|ZP_08134863.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella multiformis DSM 16608] gi|324989372|gb|EGC21322.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella multiformis DSM 16608] Length = 668 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 142/400 (35%), Positives = 218/400 (54%), Gaps = 14/400 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 +K FE + + I A+SE G+ + VQE ++ P L DV+ AQTG+GKT AFGL Sbjct: 36 LKTFEELGVSEEIRRAISELGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 94 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 L L D S + A+ ++PTREL +Q+ +L ++ + +A GG S+ Sbjct: 95 PL----LQRIDTGSKDTQ--AVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIE 148 Query: 116 RERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L++G I+V TPGRL D + RGK + + VVLDEADEML++GF++ I IL Sbjct: 149 TQIHQLRHGVQIIVATPGRLIDLMHRGKA-RLDKVTNVVLDEADEMLNMGFQESITEILT 207 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P+ R L+FSAT+S + +AK Y D + + S N ++++ +V D+ A Sbjct: 208 GVPEDRNTLLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNARDKYLA 267 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + ++ ++ AIVFC T+ L + + +L G+LSQQ+R +Q R Sbjct: 268 LKRLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHL 327 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L + EN HRSGRTGRAG+KG S+ +I + Sbjct: 328 TQILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKH 387 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394 + + RE V P+ E I ++ + + D L D Sbjct: 388 KVRNIEREIGKEFVDGTLPTPEEICKKQLFKTMDDILKTD 427 >gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] Length = 683 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 201/339 (59%), Gaps = 9/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL +RG L +Q+A+L P + +DV+ A+TG+GKT+AF L + LL+ Sbjct: 38 QALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPVIEKLLSNGRGSGGR 97 Query: 73 SA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P + +APTRELA QV E+ ++ A T + A GG + ++ L+ G IVVG Sbjct: 98 GYRNPKCIVLAPTRELAKQVENEI-FITAPT-LDTACVYGGTPIGQQESKLRRGVDIVVG 155 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D + + L++S ++ VVLDEAD+ML++GF +D+E IL P R+ +FSAT+ Sbjct: 156 TPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPAGRQTFLFSATMP 215 Query: 191 PAITTLAKNYQK-DAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKN 246 + + K + K V V++ +N+Q ID V+ + R + +++++ Y K Sbjct: 216 QWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVSQTSRTSIVMDLVTVYAKDKK 275 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I F T+ + T L + + V L G+++Q +R LQ RD R V IATDVAAR Sbjct: 276 CICFTQTKRAADELTAALGKRVSCEV-LHGDIAQAQRERTLQRFRDNRFTVLIATDVAAR 334 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+D+ D++LVIH EL ++ E+ +HR GRTGRAG++G ++ Sbjct: 335 GLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQQGAAI 373 >gi|218258510|ref|ZP_03474866.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii DSM 18315] gi|218225386|gb|EEC98036.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii DSM 18315] Length = 610 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 205/387 (52%), Gaps = 14/387 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + I +A+ E GY + VQE ++ P L + DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVAAPILKAIQEMGYESPMPVQEEVI-PFLLGDDNDVIALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 + + P AL + PTREL +Q+ +L Y+K + V GG S+ Sbjct: 60 PILQKIDV------TTYQPQALVLCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + L+ G H+VV TPGRL D + K +N+S +K V++DEADEML++GF D I IL Sbjct: 113 ESQIKTLKRGVHVVVATPGRLLDLMNRKTVNLSLVKNVIMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P+ R ML+FSAT+ I + K Y K+ + I ++N + +I +V D+ A Sbjct: 173 EVPENRNMLLFSATMPKEIAAITKRYMKNPKEIVIGNKNEGNKNIRDIYYMVRAQDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I ++ IVFC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIADFYPNIYGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L E+ HR GRTGRAG+ G+S+ + + Sbjct: 293 IQLLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381 + + R N PS AI E+ Sbjct: 353 KIREIERIINKKFEKGEIPSGSAICEK 379 >gi|220917833|ref|YP_002493137.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955687|gb|ACL66071.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 652 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 189/338 (55%), Gaps = 11/338 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T VQ A P KDV+V ++TG+GKT AF + + + + R P+ Sbjct: 34 AVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILERI--PDGRRKPS- 90 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA+QV E+ L + V GG S+ + L+ GA IVVGTPG Sbjct: 91 ---ALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAGAEIVVGTPG 147 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHIR K L + + LDEADEML++GF +++ ILD P + L+FSAT+ I Sbjct: 148 RIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLLFSATVPADI 207 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVF 250 + +Y D + ++ + + +I+ V+ D N+L G + AI+F Sbjct: 208 EQIIHDYLTDPETILLSGDEYKVENIN--NVMYPTVDAYPKPRNLLYMIGMEEPEAAIIF 265 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR+ S T VL + + L+G+L Q+ER + ++ G R +ATD+AARGID+ Sbjct: 266 CNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATDIAARGIDI 325 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DL VI+ L +P LHR GRTGR G+KG S+ ++ Sbjct: 326 SDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLV 363 >gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942] gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942] Length = 497 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 133/397 (33%), Positives = 219/397 (55%), Gaps = 27/397 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ G+ T +Q + L+ KDV+ AQTG+GKT AFG+ L ++ +P Sbjct: 16 KAINRLGFEEATPIQAETIPLGLQHKDVIGQAQTGTGKTAAFGIPLV-------EKINPE 68 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S + A+ IAPTRELA+QV EL + V GG + R+ R L+ HI+VGT Sbjct: 69 SPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI + L ++++ VV+DEADEML++GF +DIE IL + P + + L+FSAT+ Sbjct: 129 PGRLLDHINRRTLRLNNVNTVVMDEADEMLNMGFIEDIESILSNVPSEHQTLLFSATMPA 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + V + ++ S+I + V + + + +L + AIVF Sbjct: 189 PIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVFG 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V ++ L + + G+L+Q +R AL+ + G V +ATDVAARG+D+ Sbjct: 249 RTKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDIS 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V + ++ +PE+ +HR GRTGRAG+ GM++ F+ P R + + R Sbjct: 309 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKDMLR--------- 354 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 ++E +R R +++P ++I+G ++ VD L Sbjct: 355 ---AIEQTTKRKMDR-MKEPTLDEAIEGQQQVTVDRL 387 >gi|238789022|ref|ZP_04632811.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC 33641] gi|238722786|gb|EEQ14437.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC 33641] Length = 460 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 140/394 (35%), Positives = 209/394 (53%), Gaps = 18/394 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 19 LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 72 VTQALILCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPV 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q+ V V + + + I+ R ++ +L ++ + +VFC Sbjct: 191 GIERISARVQRQPVNVEV-EDGDEEPAIEQVFFETTREKRLPLLIAVLSHYQPASCVVFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 250 NTKKDCQSVFEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DL LV++ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 310 DLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMA-RAHAIEDYLQIKLKWT 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 PA V R +L+ + I G K + Sbjct: 369 PAEQV----SRSTNAMLEPEMVTLCIDGGRKAKI 398 >gi|90413445|ref|ZP_01221437.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK] gi|90325533|gb|EAS42010.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK] Length = 626 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 158/520 (30%), Positives = 262/520 (50%), Gaps = 31/520 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+V+ T +Q A + L D L AQTG+GKT AF L + + + + Sbjct: 20 ALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLNKVDLSQHK----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAHIVVGTP Sbjct: 75 -PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L++ + VLDEADEML +GF DD+ +I++ +P + ++FSAT+ P Sbjct: 134 GRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQRVLFSATMPPI 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IVFC 251 + + + + R+++A ENR S + + +V ++D A++ +L +A IVF Sbjct: 194 VKQIVDRFLRSPERIDVAGENRTVSQVSQQFWIVKGVEKDEAMIRMLETEENIDASIVFV 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR R L+ + AL G++ Q R + ++ G V +ATDV ARG+D+ Sbjct: 254 RTRQDTERLADWLSSRGCKAAALHGDIPQSLRERTVDHIKRGVIDVLVATDVVARGLDVQ 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVV 368 + V + ++ + E+ +HR GRTGRAGR G ++ ++ N M R ER+ + + Sbjct: 314 RITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTIERVTKSRMEEIQ 373 Query: 369 WEPAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 +V A R E ++Q+ + G ++ ++V D +AA L+ Sbjct: 374 LPNRDAVAAARLTRLGQELESQKEQATLEAFVELVGKLQETINV-----DAPTLAAMLLQ 428 Query: 423 IHRAG----LCAPEEITPV---SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSV 473 + P+ + R DD + GG R + + W + L V Sbjct: 429 RQQGNRPLFYKGPDPMIAAIEREQQRRERRGNDDRGSRNERGGERRSNNSADWDTYQLQV 488 Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 G +Q + + ++ + G++++ IGAI++ P TFV++ Sbjct: 489 GREQGIQVKDIVGAIANELGLSKEFIGAIKLAPSHTFVQL 528 >gi|38704144|ref|NP_312070.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. Sakai] gi|161367519|ref|NP_289738.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 EDL933] gi|168749243|ref|ZP_02774265.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4113] gi|168754142|ref|ZP_02779149.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4401] gi|168762127|ref|ZP_02787134.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4501] gi|168769579|ref|ZP_02794586.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4486] gi|168773172|ref|ZP_02798179.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4196] gi|168781305|ref|ZP_02806312.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4076] gi|168786046|ref|ZP_02811053.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869] gi|168797762|ref|ZP_02822769.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508] gi|195938382|ref|ZP_03083764.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. EC4024] gi|208806131|ref|ZP_03248468.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4206] gi|208812019|ref|ZP_03253348.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4045] gi|208818284|ref|ZP_03258604.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4042] gi|209400297|ref|YP_002272633.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4115] gi|217327948|ref|ZP_03444031.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. TW14588] gi|254795113|ref|YP_003079950.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. TW14359] gi|261228174|ref|ZP_05942455.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. FRIK2000] gi|261255030|ref|ZP_05947563.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. FRIK966] gi|291284538|ref|YP_003501356.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615] gi|331684811|ref|ZP_08385403.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299] gi|32171494|sp|Q8XA87|DEAD_ECO57 RecName: Full=Cold-shock DEAD box protein A; AltName: Full=ATP-dependent RNA helicase deaD gi|187770756|gb|EDU34600.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4196] gi|188016396|gb|EDU54518.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4113] gi|189001016|gb|EDU70002.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4076] gi|189358785|gb|EDU77204.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4401] gi|189361392|gb|EDU79811.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4486] gi|189367581|gb|EDU85997.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4501] gi|189374042|gb|EDU92458.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869] gi|189379846|gb|EDU98262.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508] gi|208725932|gb|EDZ75533.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4206] gi|208733296|gb|EDZ81983.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4045] gi|208738407|gb|EDZ86089.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4042] gi|209161697|gb|ACI39130.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC4115] gi|217320315|gb|EEC28740.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. TW14588] gi|254594513|gb|ACT73874.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359] gi|290764411|gb|ADD58372.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615] gi|320189516|gb|EFW64175.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. EC1212] gi|320640234|gb|EFX09806.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. G5101] gi|320645531|gb|EFX14540.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str. 493-89] gi|320650841|gb|EFX19298.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str. H 2687] gi|320656222|gb|EFX24134.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661912|gb|EFX29320.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str. USDA 5905] gi|320666747|gb|EFX33726.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str. LSU-61] gi|326337864|gb|EGD61698.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1125] gi|326347433|gb|EGD71158.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1044] gi|331078426|gb|EGI49632.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299] Length = 629 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|161486782|ref|NP_806876.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161501917|ref|NP_457662.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213052975|ref|ZP_03345853.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425440|ref|ZP_03358190.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646152|ref|ZP_03376205.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850431|ref|ZP_03381329.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289825794|ref|ZP_06544962.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 629 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|12517770|gb|AAG58298.1|AE005544_12 inducible ATP-independent RNA helicase [Escherichia coli O157:H7 str. EDL933] gi|13363516|dbj|BAB37466.1| inducible ATP-independent RNA helicase [Escherichia coli O157:H7 str. Sakai] gi|209758398|gb|ACI77511.1| inducible ATP-independent RNA helicase [Escherichia coli] gi|209758400|gb|ACI77512.1| inducible ATP-independent RNA helicase [Escherichia coli] gi|209758402|gb|ACI77513.1| inducible ATP-independent RNA helicase [Escherichia coli] gi|209758406|gb|ACI77515.1| inducible ATP-independent RNA helicase [Escherichia coli] Length = 646 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|330999043|ref|ZP_08322768.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT 11859] gi|329575785|gb|EGG57311.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT 11859] Length = 586 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 132/351 (37%), Positives = 187/351 (53%), Gaps = 11/351 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 +LS G+ T +Q + L +DVL A TG+GKT AF L L + + Sbjct: 18 SLSSLGFEEPTPIQTKAIPVLLEGRDVLGQAATGTGKTAAFSLPLIQRYCLDTE----PG 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTREL +QV + +GV V GG R+ + L G IVV TPG Sbjct: 74 KPQVLILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKALSRGVQIVVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R DHIR LN++ +KAVVLDEADEMLD+GF +D+E I + P+KR+ +FSAT+ P I Sbjct: 134 RALDHIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKRQTALFSATLPPKI 193 Query: 194 TTLAKNYQKDAVRVNIASE---NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +A+N+ DA + I E + + A +V + + A+ IL + AIVF Sbjct: 194 AKIAENHLHDAFHILIPKEKVPEGEQPKVKQSAYIVGRNHKTAALGRILDIESPRLAIVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR V + L + V L G L Q +R ++ R + V +ATDVAARGID+ Sbjct: 254 ARTRNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDVIVATDVAARGIDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 L VI+ + S+ E +HR GRTGRAGR+G ++ + ++ R RL + Sbjct: 314 DHLTHVINFGIPSSAETYVHRIGRTGRAGREGTAITI----LEPRESRLLK 360 >gi|163738820|ref|ZP_02146234.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis BS107] gi|163741469|ref|ZP_02148860.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10] gi|161385203|gb|EDQ09581.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10] gi|161388148|gb|EDQ12503.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis BS107] Length = 516 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 197/354 (55%), Gaps = 14/354 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY + T +Q + P L +DVL AQTG+GKT +F L + TLLA Sbjct: 11 PKVL-KAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + G + Sbjct: 69 --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L +S +K +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-------IVNILR 240 T++P I + + RV +A + +I VL S RD + +++ Sbjct: 187 TMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRKLLRHLID 246 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAI+FC+ + V K L ++ + + G+L Q +R+ L+ R+G R Sbjct: 247 QEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFREGSLRFL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351 +A+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++ Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICVPKD 360 >gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 584 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 164/548 (29%), Positives = 264/548 (48%), Gaps = 58/548 (10%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-A 72 A++E GY T +Q + L D++ AQTG+GKT AF L +R P A Sbjct: 16 AITELGYEEPTPIQAQSIGLMLSGNDIIAQAQTGTGKTAAFSLPTI-------ERIDPKA 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELAVQV + + GG + R+ R L+ G +IV+GTP Sbjct: 69 MGVQALILTPTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQLRALKRGVNIVIGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ L++S ++ VVLDEADEML++GF DDIE+IL+ +PK R+ ++SAT+ Sbjct: 129 GRLMDHMERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYILERAPKDRQTALYSATMPDE 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ Y + V I E I + D+ + IL +AI+FC Sbjct: 189 IARLARKYLRSPQMVTIEREQLTVPQIRQVYYEIGARDKFEVLTRILDLEMPTSAIIFCR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+A V + L + L G+LSQ R ++ R+ + + +ATDVAARG+D+ Sbjct: 249 TKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVATDVAARGLDIEH 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ +PE +HR GRTGRAGR G++V ++ +R+ + R + Sbjct: 309 VSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRTIERMTGAPIQRLRL 368 Query: 373 PSVEAI--RERDA-QRILQDPLFLDSIQGDEKK---MVDVLLAKHDPEKIAAGFLRIHRA 426 P++ + R R+A + L++ + + QG ++ + + L ++ P +AA ++ Sbjct: 369 PTIADVVARRREAFKDNLRELIEQHNEQGGLEQYLVLAEELAEQYSPTDLAAAAFKMM-- 426 Query: 427 GLCAPEEIT--PVSLVSGRDRF-------------------------------RDDSRAF 453 L P+ P+ +V F R RA Sbjct: 427 -LGEPDLTAEDPLEMVEDEATFDARRGDRRDSRDNGRRGDRRDNGRAGERPGERGGDRAA 485 Query: 454 K--VGGGSRDN----FK--GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505 + GG R+N F+ G + + +G +Q ++ + SG+ ++IGAI + Sbjct: 486 RGPRSGGDRNNGGRSFREEGMTRLFVDIGREQGVRPADIVGAIANESGLPGRAIGAIDIF 545 Query: 506 PDLTFVEV 513 + TFV+V Sbjct: 546 DNFTFVDV 553 >gi|333007298|gb|EGK26780.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-272] gi|333019294|gb|EGK38578.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-227] Length = 457 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTSC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVEQSALSLHGDLDQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVTLEAE 381 >gi|25511900|pir||AB0901 ATP-dependent RNA helicase (dead-box protein) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504348|emb|CAD07800.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica subsp. enterica serovar Typhi] gi|29139168|gb|AAO70736.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 646 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 34 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|332653730|ref|ZP_08419474.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16] gi|332516816|gb|EGJ46421.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16] Length = 391 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 189/337 (56%), Gaps = 9/337 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ ++GYV T VQ + + KDV+ A TG+GKT AFG+ + + P S Sbjct: 26 AIDKKGYVQATPVQGGSIPYFMEYKDVIAKAPTGTGKTFAFGIPMV-------EHIDPES 78 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + L +APTRELA+Q+ EL L A K GV GG + ++ L+ IVV T Sbjct: 79 RDVQGLVLAPTRELAIQIRDELRDLCAFKEGVRTVCLYGGQPIDKQITQLKKDPQIVVAT 138 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ + + + ++ VVLDEAD MLD+GF D+ ILD PK+R + +FSATIS Sbjct: 139 PGRLMDHVKRRTVRLDKVQTVVLDEADRMLDMGFIKDVTRILDLMPKRRNLGLFSATISR 198 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + ++ YQ+D V + + ++ DI + V +++ + +V ++ G I FC Sbjct: 199 EVMDISWVYQRDPVEITVRADEENKPDITQYRLDVERNEKVDTMVRLMEMGGYDRVIAFC 258 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ R +L A+ G++ Q+ R LQ R+G+ RV ATDVAARG+D+ Sbjct: 259 NTKNMTDRLAGLLRMRHITCEAIHGDIQQRVREKTLQKFREGQLRVLAATDVAARGLDID 318 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D++ V + ++ E +HR GRTGRA R G++ ++ Sbjct: 319 DVDAVFNYDVPDENEYYIHRIGRTGRAKRHGVAFSLV 355 >gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16] gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16] Length = 647 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 202/355 (56%), Gaps = 12/355 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL G+V+ T +Q A + L KD L AQTG+GKT AF L L + L L + Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLDLGQR------ 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAHIVVGT Sbjct: 74 -KPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRALKNGAHIVVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P Sbjct: 133 PGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLFSATMPP 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + ++ + + +D +++A +N ++ + +V ++D A+ +L +IVF Sbjct: 193 MLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 253 RTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVP 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367 >gi|194337138|ref|YP_002018932.1| DEAD/DEAH box helicase domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309615|gb|ACF44315.1| DEAD/DEAH box helicase domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 418 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 126/335 (37%), Positives = 186/335 (55%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL E GY T +Q + L+ D+L AQTG+GKT AF + + LL+EN + Sbjct: 12 ILQALQEEGYTTPTPIQAEAIPIILQGTDLLGCAQTGTGKTAAFAIPILQ-LLSENKVYD 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA+Q+G TG+ V GGV+ + + L G IV+ Sbjct: 71 KKRKIRTLIVTPTRELAIQIGESFNAYGRHTGLTNTVIFGGVNQNPQTAALIRGVDIVIA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L++ H++ +VLDEAD MLD+GF DI+ IL PK+++ L FSAT+ Sbjct: 131 TPGRLLDLLNQGFLSLRHVEILVLDEADRMLDMGFIHDIKKILAVVPKQKQSLFFSATMP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + +V++ + I+ V ++++ +V+ILR K A+VF Sbjct: 191 AEIVKLAATILHNPSKVSVTPVSSTVEIINQSIYFVDKGNKNSLLVDILRDQAIKTALVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K+L +H + A+ G +Q R AL + RV +ATD+AARGID+ Sbjct: 251 TRTKHGADKVVKILEKHNIKAEAIHGNKAQNARQRALFNFKAQTTRVLVATDIAARGIDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DLE VI+ E+ + E +HR GRTGRAG KG ++ Sbjct: 311 DDLEYVINFEMPNIAETYVHRIGRTGRAGAKGTAL 345 >gi|293409738|ref|ZP_06653314.1| conserved hypothetical protein [Escherichia coli B354] gi|291470206|gb|EFF12690.1| conserved hypothetical protein [Escherichia coli B354] Length = 457 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella capsiferriformans ES-2] Length = 461 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 193/345 (55%), Gaps = 2/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 N+ I AL E GY T +Q + L D++ AQTG+GKT AF L + L+ Sbjct: 8 NLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPVLQKLMPF 67 Query: 65 ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + SPA A AL + PTRELA+QV ++ + + V GGV + + L+ Sbjct: 68 ASSSPSPARHAVRALILVPTRELAIQVEASVKAYAKYSHLRSLVVFGGVDIKTQTPHLRA 127 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I+V TPGRL DHI K + ++ ++ +VLDEAD MLD+GF D++ IL P++R+ L Sbjct: 128 GIEILVATPGRLLDHIEQKSVQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPRQRQNL 187 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT S I L+ + + + +A N ++ + LV ++ + ++LR G Sbjct: 188 MFSATFSAEIKKLSAEFLVNPKLIEVARSNATSENVTQKVYLVGHEEKHALLAHLLRGTG 247 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A +VF T+ + SR + L F A+ G+ SQ ER AL + G+ V IATDV Sbjct: 248 AVQTLVFTKTKLTASRIARQLQREGFASDAIHGDKSQLERMQALDAFKSGKITVLIATDV 307 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+ L +VI+ E+ S E+ +HR GRTGRAG G+++ ++ Sbjct: 308 AARGLDIDQLPVVINYEIPSAAEDYVHRIGRTGRAGAFGVAISLV 352 >gi|167840691|ref|ZP_02467375.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43] Length = 458 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 199/366 (54%), Gaps = 8/366 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 16 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 71 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 72 --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 129 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 130 RIMDHLDRGTLTLGALNTLVLDEADRMLDMGFFDDIAKVARQCPPARQTLLFSATYPDGI 189 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E S I R V +R +A+ +L ++ + I FC+T Sbjct: 190 AKLSQQFLRNPKEVKL-DERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 249 KQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA + G ++ + + R + + V W P Sbjct: 309 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIEQAQKRDVEWHPLA 368 Query: 374 SVEAIR 379 ++A R Sbjct: 369 ELKADR 374 >gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] Length = 479 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 146/439 (33%), Positives = 237/439 (53%), Gaps = 26/439 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L KD++ AQTG+GKT AFG+ L + D + Sbjct: 2 GFEEATPIQAETIPLSLANKDLIGQAQTGTGKTAAFGVPLIDKIDTSKDVIQ------GI 55 Query: 79 AIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 IAPTRELA+QV EL + Y K V+++ GG ++R+ R L+ HI+VGTPGR+ D Sbjct: 56 IIAPTRELAIQVSEELYKIGYGKRARVLSIY-GGQDINRQIRALKKPPHIIVGTPGRVLD 114 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI+ K L + ++ +LDEADEML++GF +DIE IL S P +R+ L+FSAT+ I +A Sbjct: 115 HIKRKTLRLDNVHTAILDEADEMLNMGFIEDIESILASVPVERQTLLFSATMPAPIQRMA 174 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + + +D + + ++ I+ V V + + + +L + AI+F T+ V Sbjct: 175 ERFMRDPQIIRVKAKEMTVPLIEQFYVEVQERTKFDVLTRLLNIQSPELAIIFGRTKRRV 234 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + L F + G+LSQ +R + L+ ++G V +ATDVAARG+D+ + V Sbjct: 235 DELAEALNLRGFLAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGLDISGVTHVY 294 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREANVSVVWEPAPS 374 + ++ +PE+ +HR GRTGRAG++GM++ F+ P+ A ER + +V P Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKEGMAMTFITPREKSYLAVVERTTKSKMGKMV--PPTL 352 Query: 375 VEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432 EA+ +++ A + + ++++ + K+ D LL +HD + A L++ L Sbjct: 353 AEALEGQQKAAVDKISQAISANNLE-NYKEAADELLEQHDASDVVAAVLKL----LTKEP 407 Query: 433 EITPVSLV------SGRDR 445 + TPV L S RDR Sbjct: 408 DDTPVKLTEEKPLPSKRDR 426 >gi|30260423|ref|NP_842800.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames] gi|47525504|ref|YP_016853.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] gi|49183266|ref|YP_026518.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Sterne] gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis str. A2012] gi|118475995|ref|YP_893146.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus NVH0597-99] gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42] gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201] gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 4342] gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1] gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066] gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055] gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North America USA6153] gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B] gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum] gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus anthracis CI] gi|81696998|sp|Q6HPE6|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|81715465|sp|Q81VG0|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|134039177|sp|A0R8U6|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Ames] gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. 'Ames Ancestor'] gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Sterne] gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus thuringiensis str. Al Hakam] gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus NVH0597-99] gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1] gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC 4342] gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201] gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42] gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI] Length = 528 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R + Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ + K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|313675031|ref|YP_004053027.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM 4126] gi|312941729|gb|ADR20919.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM 4126] Length = 590 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 161/541 (29%), Positives = 274/541 (50%), Gaps = 51/541 (9%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFG 55 M FE + P+++ +A+ E G+V T++Q+ + P L ++D++ AQTGSGKT AFG Sbjct: 1 MLTFEELGLKPEIL-KAILEIGFVEPTAIQQKTI-PHLLNTKQDLIALAQTGSGKTAAFG 58 Query: 56 LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVS 113 L + + + +++ + +L + PTRELA+Q+ + Y+K VV V GG S Sbjct: 59 LPVINQIDSDSKKTQ------SLVLCPTRELAIQIANDFNSYTKYSKKLDVVPVY-GGAS 111 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + + + L G IVVGTPGR+ D I+ K L + ++ VVLDEADEML++GF+DD++FIL Sbjct: 112 IETQIKALNKGVQIVVGTPGRVVDLIKRKKLKLEDIEWVVLDEADEMLNMGFKDDLDFIL 171 Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 +P +R+ L+FSAT+S + ++ NY ++ N+ +++ +V D+ Sbjct: 172 SHTPDQRQTLLFSATMSKEVLRISNNYMNKPEEISSGKRNQGADKVEHFYFVVNGRDKYL 231 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 A+ I + AI+FC T+ + L + L G+LSQ +R + R Sbjct: 232 ALKRIADINPDIYAIIFCRTKRETQEISDQLMADGYNADCLHGDLSQAQRDAVMGRYRKK 291 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 ++ +ATDVAARG+D+ ++ VI+ + + E HRSGRTGRAG+ G+S+ +I Sbjct: 292 NLQMLVATDVAARGLDVNEITHVINYNIPDDLETYTHRSGRTGRAGKAGISMAIIGPRDI 351 Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKH 411 + ++L R + P+ +A+ E+ Q F++ ++ E+K ++ + Sbjct: 352 NKIKQLERILGKTFTKAEVPAGDAVIEK------QLMAFIEKVKATEVEEKQIEPFI--- 402 Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD--DSRAFKVGGGSRDNFKGS--- 466 IAA F + R L ++ + D +++ D G RD+ +G Sbjct: 403 --NNIAAEFEDLSREDLI--KKFVSLEFNKFLDYYKNSADLNQNAKAGRDRDSGRGERSD 458 Query: 467 --------SWFSLSVGSKQKAEA----RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 + L++G K A W+ + +GI G I VQ TF+EV Sbjct: 459 RGRKGGDFTKLFLNIGEKDNLNAGTLLGWINGLQSVPNGI---EFGKIDVQRSFTFMEVE 515 Query: 515 A 515 + Sbjct: 516 S 516 >gi|293414669|ref|ZP_06657318.1| ATP-independent RNA helicase DbpA [Escherichia coli B185] gi|291434727|gb|EFF07700.1| ATP-independent RNA helicase DbpA [Escherichia coli B185] Length = 457 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + ID + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIDQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G A V +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSACVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVTLEAE 381 >gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296] gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296] Length = 565 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 190/347 (54%), Gaps = 7/347 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +AL+ G + +QE L L +D++ A+TG+GKT+ FGL ++ +D Sbjct: 23 QDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVGRDDE 82 Query: 69 ----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 AP AL + PTRELA+QVG +L VA GGV + + L+ G Sbjct: 83 GWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAELLRRG 142 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 + VGTPGR+ D + LN+ +K VVLDEADEMLDLGF+ +E IL P+ R+ ++ Sbjct: 143 LEVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDRQSML 202 Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALS--DRDNAIVNILRY 241 FSAT+ + +A+ Y +R++ A E+ + R V+ D+D I ILR Sbjct: 203 FSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMIGRILRA 262 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G ++F T+ +R + L F L G+L+Q R AL+ R G+ + +AT Sbjct: 263 TGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGKVDILVAT 322 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARGID+ D+ VI+ + + + LHR+GRTGRAG +G +V ++ Sbjct: 323 DVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLV 369 >gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 517 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R + Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ + K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676] gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676] Length = 525 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R + Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ + K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185] gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2] gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W] gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W] gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2] gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185] gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 525 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R + Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ + K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|209758404|gb|ACI77514.1| inducible ATP-independent RNA helicase [Escherichia coli] Length = 646 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVATRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264] gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550] gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264] gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550] gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 533 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R + Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ + K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15] gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-Cer4] gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST24] gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] gi|146291075|sp|Q81IT9|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-ST24] gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BDRD-Cer4] gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15] gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] Length = 533 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R + Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ + K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379] gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379] Length = 486 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 125/355 (35%), Positives = 196/355 (55%), Gaps = 10/355 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE + Q ++L+ +++ T +Q + L D+L AQTGSGKT AFG+ L Sbjct: 1 MTTFEELGVSQETVQSLTNMNFISPTGIQTETIPYVLSGVDILAQAQTGSGKTGAFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 T+ ND+ +L +APTRELA QVG +L + G+ V++ GG S+ R+ Sbjct: 61 VDTV-RRNDQLQ------SLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQI 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +DL+ I+VGTPGR+ DHI + + + L +VLDEADEML++GF +D+ FIL Sbjct: 114 QDLKKRPQIIVGTPGRVIDHINRRTIKLETLTHLVLDEADEMLNMGFIEDVRFILSKITS 173 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + + L+FSAT+ I L+K + KD + S+ DI A + +++ +V Sbjct: 174 RHQTLLFSATMPKTIMELSKEFMKDYKLIKTMSDEDLKPDITEYATIARENEKLETLVGF 233 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L AIVF T+ V L + L G+++Q +R L+ ++ ++ Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELASALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARGID+ D+ V + ++ + E+ HR GRTGRAG+ G+++ F+ P M Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEM 348 >gi|168762636|ref|ZP_02787643.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4501] gi|189367023|gb|EDU85439.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str. EC4501] Length = 457 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA V EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADHVASELRPLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVTLEAE 381 >gi|191168055|ref|ZP_03029855.1| cold-shock DEAD box protein A [Escherichia coli B7A] gi|218555734|ref|YP_002388647.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI1] gi|260857291|ref|YP_003231182.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str. 11368] gi|260869914|ref|YP_003236316.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str. 11128] gi|293449499|ref|ZP_06663920.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088] gi|190901924|gb|EDV61673.1| cold-shock DEAD box protein A [Escherichia coli B7A] gi|218362502|emb|CAR00126.1| ATP-dependent RNA helicase [Escherichia coli IAI1] gi|257755940|dbj|BAI27442.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str. 11368] gi|257766270|dbj|BAI37765.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str. 11128] gi|291322589|gb|EFE62018.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088] gi|323154376|gb|EFZ40577.1| cold-shock DEAD box protein A [Escherichia coli EPECa14] gi|323178875|gb|EFZ64451.1| cold-shock DEAD box protein A [Escherichia coli 1180] gi|323183117|gb|EFZ68515.1| cold-shock DEAD box protein A [Escherichia coli 1357] Length = 629 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|330886294|gb|EGH20195.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. mori str. 301020] Length = 459 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 196/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 19 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 76 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I+ +P++R+ L+FSAT I Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIKQTPQRRQTLLFSATYPVGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368 >gi|300938072|ref|ZP_07152850.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1] gi|300456932|gb|EFK20425.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1] Length = 646 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|71734717|ref|YP_272808.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555270|gb|AAZ34481.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. phaseolicola 1448A] Length = 479 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 129/357 (36%), Positives = 197/357 (55%), Gaps = 8/357 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 39 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 95 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 96 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 152 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 153 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 212 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+ + +D V + + + S ID ++ R A+V +L + + + FC T Sbjct: 213 KQLSSKFMRDPQTVKVEALH-ADSQIDQIFYEISPEQRLEAVVKVLGHFRPASCVAFCFT 271 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V L V L G+L Q++R L M + V +ATDVAARG+D+ L Sbjct: 272 KQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDAL 331 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 332 DMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 388 >gi|302387031|ref|YP_003822853.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1] gi|302197659|gb|ADL05230.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum WM1] Length = 485 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 126/381 (33%), Positives = 205/381 (53%), Gaps = 10/381 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 MK F N I + IG+AL GY T VQ ++ L + D++V AQTGSGKT A+ + + Sbjct: 1 MKSFRNYIISEDIGKALKGLGYDIPTEVQARVIPAALEKNDLMVKAQTGSGKTAAYAIPI 60 Query: 59 ASTL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 + EN P AL + PTRELAVQV + + + A G S E Sbjct: 61 CELIEWLEN-------KPQALILTPTRELAVQVKEDFTNIGRFKRLKAAAIYGRHSFSME 113 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 + +L+ H+VVGTPGR+ DHI+ L ++ + +V+DEAD MLD+GF +E I+ P Sbjct: 114 KAELKQKTHVVVGTPGRVMDHIKKGTLPLTKINYLVIDEADRMLDMGFIKQVEAIMKELP 173 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 +R ++FSAT+ + ++ +Y +D + ++++ N SDID+ V D+ + + Sbjct: 174 MERMTMLFSATMPQEVKNMSLDYMRDPINIDVSEANITTSDIDHFLYYVKEEDKFELLND 233 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ + ++FCST+ V + L + + G + Q +R ++++ + G R Sbjct: 234 VMIVEKPDSCMIFCSTKDRVDIVCERLKNFGYPCNKMHGGMEQADRLSSIKGFKRGEYRY 293 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 IATD+AARGID+ + +VI+ ++ + EN +HR GRTGRAG+KG +V + R Sbjct: 294 LIATDLAARGIDIETISMVINYDIPLDKENYVHRPGRTGRAGQKGKAVSFLDPAQTRYLH 353 Query: 358 RLFREANVSVVWEPAPSVEAI 378 + S+ P P+ E + Sbjct: 354 DIQELIGFSIQELPKPAKEEV 374 >gi|301022016|ref|ZP_07185959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1] gi|300397731|gb|EFJ81269.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1] Length = 646 Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|332307071|ref|YP_004434922.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174400|gb|AEE23654.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 446 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/356 (36%), Positives = 211/356 (59%), Gaps = 12/356 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P +G+AL +G+ T +Q + L KD++ S++TGSGKT+AF L Sbjct: 3 FSDLPLDHRLGKALEIKGFTQATEIQAQAIPYALMGKDLIASSKTGSGKTLAFLLPAVQR 62 Query: 62 LLAENDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 +L + P S P L +APTRELA QV +L+WL AK + A+ +GG + + + + Sbjct: 63 VLTKQ----PLSRKDPRVLILAPTRELAKQVFFQLKWLIAKHQLKAALILGGENFNDQVK 118 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-LDSSPK 178 L++ VVGT GR+ DH+ GK L ++ L+ +++DEAD MLDLGF + ++ I + + Sbjct: 119 ALRHYPQFVVGTAGRIADHLSGKSLYLNGLEMLIMDEADRMLDLGFSEQLKQINAAADHR 178 Query: 179 KRRMLMFSATI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIV 236 KR+ +MFSAT+ + A+ L ++ K R++I + +H DI R L ++ ++ + Sbjct: 179 KRQSMMFSATLDNAALHHLTQSMLKAPQRISIGISSAEHKDIQQRFFLADNVTHKERMLA 238 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +I+ + IVF +TRA R + +L E +ALSG LSQ +R+N + G+ Sbjct: 239 HIINEKDHRQVIVFTATRADTERLSSLLKEQGLYSIALSGNLSQGQRNNIMSEFGRGQQH 298 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 + + TD+A+RG+DL ++ LV++ +L + +HR GRTGRAG KG +V FV P++ Sbjct: 299 ILVTTDIASRGLDLLNVSLVVNFDLPKLADEYVHRVGRTGRAGNKGEAVSFVGPKD 354 >gi|320175526|gb|EFW50622.1| Cold-shock DEAD-box protein A [Shigella dysenteriae CDC 74-1112] Length = 626 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|315224756|ref|ZP_07866579.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga ochracea F0287] gi|314945384|gb|EFS97410.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga ochracea F0287] Length = 584 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 204/357 (57%), Gaps = 14/357 (3%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGL 56 M +FE + + I +A+S+ G+ + +Q+ + P L D++ AQTG+GKT FG Sbjct: 1 MNLFEQLGLNEPILKAISDMGFETPSEIQQKAI-PTLLANGADMVALAQTGTGKTATFGF 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114 L L+ + R + L ++PTREL +Q+ EL YAK T V V GG S+ Sbjct: 60 PLLQ-LIDTDSRVTQG-----LILSPTRELCLQIASELRN-YAKYLTKVNVVAVYGGASI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ GA I+V TPGR+ D IR ++ISH+ VLDEADEML++GF +DI IL Sbjct: 113 EEQARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 +P+++ +FSAT+ + +A+ + + + + + + N+ + + + +V+ R A Sbjct: 173 HTPQEKSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + + + ++VFC T+ + L E + AL G+LSQ +R ++ R + Sbjct: 233 LKRLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQ 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ++ +ATDVAARGID+ D+ VIH +L E HRSGRTGRAG+ G+S+ ++P++ Sbjct: 293 IQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKS 349 >gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547] gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547] Length = 499 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 188/349 (53%), Gaps = 9/349 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66 P ++ AL G + +Q L L +D++ A+TG+GKT+ FG+ + ++ N Sbjct: 13 PDIVA-ALEAGGITHPFPIQSMTLPVALDRQDIIGQAKTGTGKTLGFGVPMVQNVVGPNH 71 Query: 67 ---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 D+ AP ALA+APTRELA+QV +LE A+ GV V GG + + L+ Sbjct: 72 EGYDQLERPGAPQALAVAPTRELALQVATDLERAAARLGVRVLTVYGGRAYEPQIEALER 131 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGRL D L ++H + VVLDEADEMLDLGF D+E +L +P R + Sbjct: 132 GVEIVVGTPGRLIDLAERGHLTLAHARTVVLDEADEMLDLGFLPDVEKLLAMTPAGRHTM 191 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNAIVNIL 239 +FSAT+ A+ +A+ Y + E ID D+ + +L Sbjct: 192 LFSATMPGAVVAMARRYMNQPTHIRAMEEVPGAGATVEAIDQFVYRAHAMDKVEMVARLL 251 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G IVF T+ + ++ + L E F A+ G+L Q R AL+ R G+ V + Sbjct: 252 QSEGRGLTIVFTRTKRTAAKVAEQLVERGFAAAAIHGDLGQGAREQALRAFRTGKVDVLV 311 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ATDVAARGID+ D+ V++ + + + LHR GRTGRAG+ G++V ++ Sbjct: 312 ATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRIGRTGRAGKNGVAVTLV 360 >gi|293406774|ref|ZP_06650700.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412] gi|298382514|ref|ZP_06992111.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302] gi|300897926|ref|ZP_07116305.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1] gi|291426780|gb|EFE99812.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412] gi|298277654|gb|EFI19170.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302] gi|300358356|gb|EFJ74226.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1] Length = 650 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|117625458|ref|YP_858781.1| ATP-dependent RNA helicase DeaD [Escherichia coli APEC O1] gi|209920639|ref|YP_002294723.1| ATP-dependent RNA helicase DeaD [Escherichia coli SE11] gi|227887886|ref|ZP_04005691.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972] gi|300817586|ref|ZP_07097802.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1] gi|300904348|ref|ZP_07122201.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1] gi|300918917|ref|ZP_07135476.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1] gi|300926099|ref|ZP_07141917.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1] gi|300948811|ref|ZP_07162879.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1] gi|300955748|ref|ZP_07168093.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1] gi|300977829|ref|ZP_07174069.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1] gi|300990761|ref|ZP_07179333.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1] gi|301301782|ref|ZP_07207916.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1] gi|301326415|ref|ZP_07219769.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1] gi|301644873|ref|ZP_07244845.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1] gi|606102|gb|AAA57965.1| two frameshifts relative to ECODEAD [Escherichia coli str. K-12 substr. MG1655] gi|30042761|gb|AAP18484.1| inducible ATP-independent RNA helicase [Shigella flexneri 2a str. 2457T] gi|56383827|gb|AAN44670.2| inducible ATP-independent RNA helicase [Shigella flexneri 2a str. 301] gi|73857176|gb|AAZ89883.1| inducible ATP-independent RNA helicase [Shigella sonnei Ss046] gi|81247009|gb|ABB67717.1| inducible ATP-independent RNA helicase [Shigella boydii Sb227] gi|115514582|gb|ABJ02657.1| inducible ATP-independent RNA helicase [Escherichia coli APEC O1] gi|209913898|dbj|BAG78972.1| RNA helicase [Escherichia coli SE11] gi|227835282|gb|EEJ45748.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972] gi|281180206|dbj|BAI56536.1| RNA helicase [Escherichia coli SE15] gi|300308206|gb|EFJ62726.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1] gi|300317381|gb|EFJ67165.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1] gi|300403699|gb|EFJ87237.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1] gi|300407069|gb|EFJ90607.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1] gi|300413943|gb|EFJ97253.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1] gi|300417864|gb|EFK01175.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1] gi|300451700|gb|EFK15320.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1] gi|300529884|gb|EFK50946.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1] gi|300842763|gb|EFK70523.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1] gi|300846904|gb|EFK74664.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1] gi|301076818|gb|EFK91624.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1] gi|315257088|gb|EFU37056.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 85-1] gi|315288936|gb|EFU48334.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 110-3] gi|315294907|gb|EFU54246.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 153-1] gi|315297886|gb|EFU57156.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 16-3] gi|324008761|gb|EGB77980.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 57-2] gi|324012112|gb|EGB81331.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 60-1] gi|324018314|gb|EGB87533.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 117-3] Length = 646 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|301047996|ref|ZP_07195038.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1] gi|300300139|gb|EFJ56524.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1] Length = 646 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 200/372 (53%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPAGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LVI+ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|320202076|gb|EFW76651.1| Cold-shock DEAD-box protein A [Escherichia coli EC4100B] Length = 629 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|254520792|ref|ZP_05132848.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA] gi|226914541|gb|EEH99742.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA] Length = 526 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 155/527 (29%), Positives = 258/527 (48%), Gaps = 40/527 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++++ G+ + +Q + ++ D++ AQTG+GKT AFG + + S Sbjct: 17 KSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGCGII-------NHISKK 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S A+ +APTRELA+QV EL+ L + + GG + + R L+ +IVVGTP Sbjct: 70 SGLSAIILAPTRELAIQVNDELKRLSKYDDLTILPVYGGDPITNQIRALKRNVNIVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI+ + + +K +VLDEADEML++GF DD+E I+ P +R+ L+FSAT+ Sbjct: 130 GRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQTLLFSATMPDQ 189 Query: 193 ITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LAK Y K DA ++I + S I V+ R A+ +L + +AI+FC Sbjct: 190 IRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDFDTPSSAIIFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + + + V + G++SQ R L+ ++G +ATDVAARGID+ Sbjct: 250 RTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATDVAARGIDVE 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + VI+ +L + E+ +HR GRTGRA R+G++ ++ +++ + + Sbjct: 310 GITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQIKSVTKSDISRKN 369 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDV---LLAKHDPEKIAAGFLRIHRAG 427 P+V I ++ IL+D ++I D K + V L K+D +I A + Sbjct: 370 IPTVNDIFNSKSKSILED--VTNTINDSDYSKFIPVATELTQKYDSVEIIAALI------ 421 Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487 +++F DD LS+G + + L+ Sbjct: 422 ---------------KNKFNDDLLETYTSDVLEAPKSEDIRLFLSIGRRDGINPKTLVNF 466 Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534 + ++ I SIG I + + +FV +S D D + LDK I +K Sbjct: 467 IKDTARIRASSIGDIDILENFSFVNISPDVKDKV-----LDKCIGVK 508 >gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I] gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I] Length = 451 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/410 (33%), Positives = 224/410 (54%), Gaps = 27/410 (6%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FEN+ + + +AL+ G+ T +Q++ + L+ KDV+ A TG+GKT AFG+ + Sbjct: 1 MSSFENLKLSEPVMKALASMGFEESTHIQDSTIPLALKGKDVIGQAPTGTGKTAAFGIPM 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + +N SP+ A+ I PTRELA+QV EL + G+ GG + Sbjct: 61 IE--ICDN---SPSIQ--AIVITPTRELAIQVSEELNKIGQFKGIRALPIYGGQEYKWQM 113 Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 + L+ I+V TPGRL DH+ + K + + +K +VLDEADEMLD+GF DDI +++ P Sbjct: 114 KGLKEKPQIIVATPGRLMDHLTKQKSIKGNDVKMLVLDEADEMLDMGFIDDIYAVMEKLP 173 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 +R+ L+FSAT+SP I +A K V S+ + I V V S + A+ Sbjct: 174 AERQTLLFSATMSPEIKKIAVELMKKPHIVGQESKKVKSPAISQHYVEVHESGKFEALCR 233 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL AIVF T+ V + L + V L G++ QQ R++ ++ ++G+ +V Sbjct: 234 ILDTQCPDLAIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQFKNGKTQV 293 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARG+D+ D+ V + ++ +PE+ +HR GRTGRAG+ G+S+ + Sbjct: 294 LVATDVAARGLDISDVSHVFNFDIPRDPESYVHRIGRTGRAGKSGISITFV--------- 344 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 FRE + + +E + R +R ++ P ++I+ ++K++D L Sbjct: 345 -TFREIKLLKL------IEQVSARRMER-MEVPTLEEAIEEQQRKVIDSL 386 >gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435] gi|123660708|sp|Q4L7W0|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956 gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 503 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 191/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L G+ T +Q+ + L KD+L AQTG+GKT AFG+ L ++ + Sbjct: 15 ETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S AL +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 68 SGVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKRGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI TL + + K V + ID +V ++ + N L H + AIVF Sbjct: 188 AIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|331682838|ref|ZP_08383457.1| ATP-independent RNA helicase DbpA [Escherichia coli H299] gi|331080469|gb|EGI51648.1| ATP-independent RNA helicase DbpA [Escherichia coli H299] Length = 457 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPTILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRMLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|149907510|ref|ZP_01896257.1| Helicase [Moritella sp. PE36] gi|149809180|gb|EDM69109.1| Helicase [Moritella sp. PE36] Length = 615 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 199/349 (57%), Gaps = 11/349 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ I + L++ GY T +Q + DVL AQTG+GKT AF L L S + Sbjct: 14 NLPEPILQVLNDLGYEAPTPIQAECIPLLQNGGDVLGMAQTGTGKTAAFALPLLSNI--- 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 + + P L +APTRELA+QV + Y++ G V GG S + + L+ Sbjct: 71 ---DTALTKPQILVLAPTRELAIQVAEAFQT-YSRHMRGFHVLPIYGGQSYPIQLKALKR 126 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++VGTPGR+ DHI L++S +KA+VLDEADEML +GF DD+E IL +P +R+M Sbjct: 127 NPQVIVGTPGRVIDHINRGTLDLSGIKALVLDEADEMLRMGFIDDVESILSKTPAERQMA 186 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYH 242 +FSAT+ I + K + + V IA++ +I+ + +++ L + + + IL Sbjct: 187 LFSATMPEEIRRITKRFMTNPTSVKIANKTSTVENIEQKCLIIGGLQAKLDGLTRILETE 246 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 I+F T+ + L + AL+G+L+Q R + ++ G+ + IATD Sbjct: 247 DYDGVIIFARTKTMTVELAEKLEARGYSAAALNGDLNQAMRERTVSRLKSGQLDIVIATD 306 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 VAARG+D+P ++LVI+ ++ ++ E+ +HR GRTGRAGRKG ++ F P+ Sbjct: 307 VAARGLDVPRIDLVINYDIPTDTESYVHRIGRTGRAGRKGTAILFAAPR 355 >gi|298208330|ref|YP_003716509.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Croceibacter atlanticus HTCC2559] gi|83848251|gb|EAP86121.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Croceibacter atlanticus HTCC2559] Length = 623 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 153/512 (29%), Positives = 256/512 (50%), Gaps = 36/512 (7%) Query: 19 GYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76 G+ + VQE + P L EKD ++ AQTG+GKT AFG L + A Sbjct: 2 GFTEPSEVQEKAI-PILLEKDTDIVALAQTGTGKTAAFGFPLIQKIDA------GYKKTQ 54 Query: 77 ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 L ++PTREL +Q+ EL+ Y+K G+ GG S+ + + ++ GA I+V TPGR Sbjct: 55 GLILSPTRELCLQITNELQN-YSKYVKGLNPVAVYGGASITEQAKQIKRGAQIIVATPGR 113 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + D IR ++IS ++ VLDEADEML++GF DDI IL SP+ + +FSAT+ + Sbjct: 114 MQDMIRRGLVDISEIQYCVLDEADEMLNMGFYDDITEILSHSPEDKFTWLFSATMPKEVA 173 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 +AK++ + V + + S+N+ ++ + LV DR A+ + + +++FC T+ Sbjct: 174 RIAKDFMNNPVEITVGSKNKGTENVSHEYYLVGGRDRYKALKRLCDANPEIFSVIFCRTK 233 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 + + L + + A+ G+LSQ +R ++ R + ++ +ATDVAARGID+ D+ Sbjct: 234 RDTQKVAEQLIQDGYSAGAIHGDLSQNQRDLVMRSFRTRQIQMLVATDVAARGIDVDDIT 293 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 VIH L PE HRSGRTGRAG+ G S+ + ++ R+ + + + + + P Sbjct: 294 HVIHYTLPDEPEVYTHRSGRTGRAGKSGTSMTIATKSEMRKIKAIEKRIQRNFERKDVP- 352 Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEI 434 D + I Q LF + Q + + ++ + K+ P+ G EE+ Sbjct: 353 -------DGEEICQVQLFHLASQIKDTE-INHAIDKYVPQ-------LEEELGDYTKEEL 397 Query: 435 T----PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS---WFSLSVGSKQKAEARWLMPM 487 V + + DS + +V +RD +G S + ++VG K + L Sbjct: 398 IKKFFSVEFTRFHNYYSKDSIS-QVSADNRDYSEGDSDSVRYFINVGGKDGFDWMSLKDF 456 Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 L ++R + + V+ +F AD +D Sbjct: 457 LKEQLDLDRDGVYKVDVKNTFSFFNTDADKLD 488 >gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC 43553] gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC 43553] Length = 493 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 199/344 (57%), Gaps = 2/344 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71 ++++E GY T +Q + + +DV+ +AQTG+GKT AF + + L+ N SP Sbjct: 30 QSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILHRLMPLANASASP 89 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P+ AL + PTRELA QV ++ +T + AV GGV + ++ L+ G I+V Sbjct: 90 ARHPVRALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEILVA 149 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ K +N+S + +VLDEAD MLD+GF D+E I+ P +R+ L+FSAT S Sbjct: 150 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFS 209 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L ++Y V + +A+ N + I A ++ + A+V++++ G K IVF Sbjct: 210 NEIRKLGRSYLNQPVEIEVAARNATATTITQIAYKMSSDAKRAAVVHLVKSRGLKQVIVF 269 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +T+ +R + L + ++ G+ +Q +R AL+ + G V +ATDVAARG+D+ Sbjct: 270 SNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGDLEVLVATDVAARGLDV 329 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ +L N E+ +HR GRTGRAG G ++ + + +R Sbjct: 330 AGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEER 373 >gi|222034881|emb|CAP77624.1| Cold-shock DEad box protein A [Escherichia coli LF82] Length = 645 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 33 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 87 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 88 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 146 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 266 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 267 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 326 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 327 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 386 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 387 VELPNAELLGKR 398 >gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917] gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917] Length = 603 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 192/339 (56%), Gaps = 8/339 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L+ +GY + +Q A + +D++ AQTG+GKT AF L L L E Sbjct: 57 TLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLQPE------GP 110 Query: 74 APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L +APTRELA+QV + + + V GG + L+ G +VVGTP Sbjct: 111 GPQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGGSDFRSQIHSLKRGVDVVVGTP 170 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R LN SHL+++VLDEADEML +GF DD+E+ILD P++R++++FSAT+ Sbjct: 171 GRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPAE 230 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L+K Y ++ + I ++ ++ I R + + S + A+ +L + I+F Sbjct: 231 IRRLSKRYLREPAEITIKTQEKEARRIRQRCITLQNSHKLEALNRVLEAVTGEGVIIFAR 290 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+A ++ L V L+G++ Q +R ++ +R G + +ATDVAARG+D+ Sbjct: 291 TKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAARGLDVER 350 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + LVI+ ++ + E +HR GRTGRAGR G ++ FV P+ Sbjct: 351 IGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPR 389 >gi|291486518|dbj|BAI87593.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. natto BEST195] Length = 479 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 121/347 (34%), Positives = 198/347 (57%), Gaps = 8/347 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F+N I I AL GY T VQ++++ L KD++V +QTGSGKT +FG+ L Sbjct: 1 MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 LA+ D + P AL + PTRELAVQV ++ + + G S +++ Sbjct: 61 CE--LADWDE----NKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +L+ +HIVVGTPGR+ DHI L + L +V+DEADEML++GF + +E I+ P Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R ++FSAT+ I L++ Y ++ + I + +I++ + V ++ + + ++ Sbjct: 175 ERTTMLFSATLPEDIEKLSRQYMQNPEHIEIKAAGLTTRNIEHAVIQVREENKFSLLKDV 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + I+FC T+ V++ T L + + + G + Q++R + + + G R Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARGID+ ++ LVI+ +L E+ +HR+GRTGRAG KG ++ Sbjct: 295 VATDVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAI 341 >gi|229181700|ref|ZP_04309023.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W] gi|228601733|gb|EEK59231.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W] Length = 481 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/370 (32%), Positives = 199/370 (53%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D PKKR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAIRERDA 383 S E + + A Sbjct: 372 SKEEVMKEKA 381 >gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str. Eklund 17B] gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str. Eklund 17B] Length = 526 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 157/510 (30%), Positives = 249/510 (48%), Gaps = 34/510 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + +QE + L D++ AQTG+GKT A+G + S R + Sbjct: 17 KAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILS-------RLNDT 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131 + AL +APTRELAVQV EL+ L V GG S+ R+ R L+ + IVVGT Sbjct: 70 NGIKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRRDNIDIVVGT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I K L ++ + +VLDEADEML++GF +DIE I+ ++P +R+ L+FSAT+ Sbjct: 130 PGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIEDIETIISNTPAERQTLLFSATMPA 189 Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAKNY K DA V I + S I+ ++ R A+ +L +AI+F Sbjct: 190 PIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNPSSAIIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V + L + V + G++SQ R L+ ++G + IATDVAARGID+ Sbjct: 250 CRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVAARGIDV 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + VI+ +L + E+ +HR GRTGRA R G + ++ +++ R ++ + Sbjct: 310 DGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQRVTKSTITEK 369 Query: 371 PAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLRIHRA 426 P+ I R I+ + +DS GD V L +DP I A ++I Sbjct: 370 SVPTANEIHSRKFTNIMNEIKETIDS--GDFSTFVPSAIELNEAYDPISIIASLMKIK-- 425 Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486 F ++ S+++ + SVG K + L+ Sbjct: 426 -------------FENESSFEYNTDTLDAPSASKNDVR----LFFSVGKKDGLTPKILIN 468 Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + + + +IG I + + +FV + D Sbjct: 469 YIKDQTRVRASAIGKIDLMDNFSFVTIDED 498 >gi|170768852|ref|ZP_02903305.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627] gi|170122400|gb|EDS91331.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627] Length = 457 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 203/377 (53%), Gaps = 20/377 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS----TLLAENDRFS 70 L+E GY+ +T VQ A L L +DV V A+TGSGKT AFGL L TL Sbjct: 18 LNELGYLTMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQHVDVTLFQTQ---- 73 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+ Sbjct: 74 ------ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGIQRDSLQHAPHII 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ + + L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT Sbjct: 127 VATPGRLLDHLQKGTVTLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 AI ++ Q++ + + I + I+ + + + + +L H + + Sbjct: 187 WPEAIAAISGRVQRNPLAIEIDT-TEALPPIEQQFYETSAQGKIPLLKRLLSLHQPSSCV 245 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+T+ L E +AL G+L Q+ER L +G ARV +ATDVAARG+ Sbjct: 246 VFCNTKKDCQAVYDALNEAGQSALALHGDLEQRERDQTLVRFSNGSARVLVATDVAARGL 305 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367 D+ LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + Sbjct: 306 DIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANILSDMLQIKL 364 Query: 368 VWEPAPSVEAIRERDAQ 384 W+ P+ A+ +A+ Sbjct: 365 NWQTPPASSAVVPLEAE 381 >gi|162138368|ref|YP_542567.2| ATP-dependent RNA helicase DeaD [Escherichia coli UTI89] Length = 629 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp. IMCC9063] gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp. IMCC9063] Length = 558 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 204/355 (57%), Gaps = 12/355 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +L + + T +Q + L +KD+L SAQTG+GKT AF + + + + Sbjct: 8 NLNKNLNASLVKMKFDTPTPIQIKSIPIILEQKDILASAQTGTGKTAAFCIPMIEMIATK 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNG 124 A+ + PTRELA QV +E L + V+ +VC +GG ++++ R L+ Sbjct: 68 K-------INRAIILVPTRELAKQVNDVIEKLLFQQSVIKSVCLVGGEPMNKQLRRLKTK 120 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVVGTPGR+ DH++ K L ++ + ++LDE D MLD+GF I+ I+ PK+++ LM Sbjct: 121 PQIVVGTPGRVNDHLKRKSLLLNKVDLLILDEMDRMLDMGFSIQIDEIIKFLPKQKQTLM 180 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HG 243 FSATI+P+I L+K Y +A RV++A+ N I + + D+ N +V ++ HG Sbjct: 181 FSATIAPSIERLSKKYLNNAERVSVAAANATLITIKQEVINLRQEDKYNTLVEQVKTKHG 240 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF T+ + + K L + F+ +L G L Q +R+ + R + V +ATD+ Sbjct: 241 S--TLVFVKTKHNAKKLAKNLEKEGFESDSLHGNLRQNKRNQVIAKFRANKIHVLVATDI 298 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357 AARG+D+P +E V++ +L E+ +HR GRTGRAG G + FV P + ++ E Sbjct: 299 AARGLDIPHIEHVVNFDLPQQAEDFIHRMGRTGRAGASGTAWSFVTPSDKRKWHE 353 >gi|83648397|ref|YP_436832.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396] gi|83636440|gb|ABC32407.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396] Length = 593 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 214/376 (56%), Gaps = 20/376 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77 GY + +QE + L+ + +L AQTG+GKT AF L L +R P +P Sbjct: 31 GYEQPSPIQEQSIPLLLQGESILGVAQTGTGKTAAFALPLL-------ERLDPKIQSPQI 83 Query: 78 LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 + +APTRELA+QV + Y V+ + GG + + R L+ G ++VGTPGR+ Sbjct: 84 IVLAPTRELAIQVAEAFKSYSRYLPDFTVLPIY-GGQDMRGQLRSLKRGVQVIVGTPGRV 142 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 DH++ K L++S ++AVVLDEADEML +GF DD+E IL ++P + + +FSAT+ PAI Sbjct: 143 LDHLQRKSLDLSQIRAVVLDEADEMLRMGFIDDVEEILSNAPGECQYALFSATMPPAIKR 202 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 +A+ Y K A V IA++ I ++V S + +A+ +L + I+F T++ Sbjct: 203 VAEKYLKGAKEVRIAAKTSTVERISQHVLMVDNSHKLDALTRVLEVENFEGMIIFVRTKS 262 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 + + + L + AL+G+ +Q+ R + ++ GR + +ATDVAARG+D+ + L Sbjct: 263 ATTELAEKLQARGYAAEALNGDQTQKIREQTIDRLKKGRLDIVVATDVAARGLDVERIGL 322 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV--WEPA 372 V++ ++ + E +HR GRTGRAGR+G ++ F P+ +RR R A + +E A Sbjct: 323 VLNYDIPYDTEAYVHRIGRTGRAGREGKAILFAAPK--ERRLLRAIESATKQPLTPYE-A 379 Query: 373 PSVEAIRERDAQRILQ 388 PS E I E QRI Q Sbjct: 380 PSAEKISE---QRIQQ 392 >gi|331679243|ref|ZP_08379915.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591] gi|331073308|gb|EGI44631.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591] Length = 651 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 39 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 93 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 94 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 273 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 393 VELPNAELLGKR 404 >gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891] gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891] Length = 660 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 202/355 (56%), Gaps = 12/355 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL G+V+ T +Q A + L KD L AQTG+GKT AF L L + L LA+ Sbjct: 20 ALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLDLAQR------ 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L+NGAHIVVGT Sbjct: 74 -KPQAIILAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRALKNGAHIVVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I L++ + VLDEADEML++GF DD+ I++ +P + ++FSAT+ P Sbjct: 133 PGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQRVLFSATMPP 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + ++ + + +D +++A +N ++ + +V ++D A+ +L +IVF Sbjct: 193 MLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+P Sbjct: 253 RTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVP 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367 >gi|161950038|ref|YP_404825.2| ATP-dependent RNA helicase DeaD [Shigella dysenteriae Sd197] gi|309785489|ref|ZP_07680120.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617] gi|308926609|gb|EFP72085.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617] Length = 629 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGQQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|193067315|ref|ZP_03048283.1| cold-shock DEAD box protein A [Escherichia coli E110019] gi|192959272|gb|EDV89707.1| cold-shock DEAD box protein A [Escherichia coli E110019] Length = 629 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|300823875|ref|ZP_07103999.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7] gi|309793740|ref|ZP_07688166.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7] gi|300523643|gb|EFK44712.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7] gi|308122697|gb|EFO59959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7] Length = 646 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118] gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118] Length = 492 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/473 (31%), Positives = 243/473 (51%), Gaps = 35/473 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +Q + L DV+ AQTG+GKT AFGL + L + + Sbjct: 14 KAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131 A+ I+PTRELA+Q EL L + V V GG + R+ + L Q+ HI+VGT Sbjct: 72 ----AVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHTPHILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI+ +N++H+K ++LDEADEMLD+GF DDIE I+ + P +R+ L+FSAT+ Sbjct: 128 PGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + + V I ++ +D V ++ + + ++ + IVF Sbjct: 188 EILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V ++ L + + G+L+QQ R N L+ ++G + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE------ 362 + V + ++ +PE+ +HR GRTGRAG G SV FV P M R E+L ++ Sbjct: 308 GVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLK 367 Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + + + + + +++ I++ L D+ + LL ++D ++ A Sbjct: 368 PPTQDEAFIGQVSSALDDIKD----------LIADTDTERYEAQAQALLEQYDAVEVVAA 417 Query: 420 FLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 FL + P +ITP + R + R + ++ G DNFK S F+ Sbjct: 418 FLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGN-YRRGN---DNFKRSKRFN 466 >gi|120555341|ref|YP_959692.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter aquaeolei VT8] gi|120325190|gb|ABM19505.1| ATP-dependent RNA helicase CsdA [Marinobacter aquaeolei VT8] Length = 528 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 202/374 (54%), Gaps = 8/374 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ EA+S GY + +Q + L +L AQTG+GKT AF L L S + A Sbjct: 33 PAVL-EAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLLSRIDAN-- 89 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126 + P L +APTRELA+QV +K V GG + R L+ GA Sbjct: 90 ----VAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGLKRGAQ 145 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++VGTPGR+ DH+R L + LKA+VLDEADEML +GF DD+E IL +P + +FS Sbjct: 146 VIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQRALFS 205 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I +A+ Y K+A V I SE R I + V + +A+ IL Sbjct: 206 ATMPPQIKKVAQTYLKNATEVRIESETRTVERIAQFVLPVYAERKLDALTRILEVEPFDA 265 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +I+F T+A + + L+ V LSG+L+Q++R ++ ++ G+ + IATDVAAR Sbjct: 266 SIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIATDVAAR 325 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+P + VI+ ++ + E +HR GRTGRAGR G ++ ++ + L R N Sbjct: 326 GLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGRTGKAILLVTPRERSWLRTLERATNSP 385 Query: 367 VVWEPAPSVEAIRE 380 + PS A+++ Sbjct: 386 MEPYQLPSPAALQK 399 >gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma laidlawii PG-8A] gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii PG-8A] Length = 448 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/404 (33%), Positives = 224/404 (55%), Gaps = 7/404 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E NI + I +AL+ GY T++QE + L +D+L SAQTG+GKT AF + + Sbjct: 1 MKFSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118 + + +P AL + PTRELA+Q+ ++ +YAK +++ I GGVS R+ Sbjct: 61 QKIYETKEHKAPRKVQ-ALILTPTRELALQIHENVK-IYAKYLNIISTTIYGGVSQKRQE 118 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ G +V+ TPGRL D + K +++ ++ +VLDEAD+MLD+GF D+ I+D +PK Sbjct: 119 EALKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPK 178 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 KR+ ++FSAT+ I L+K + R+ + + I +V +++ ++++ Sbjct: 179 KRQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDL 238 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + K+ +VF T+ ++ K L + + G SQ R AL + G+ ++ Sbjct: 239 IYTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKIL 298 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATD+AARGID+ L+ VI+ EL PE +HR GRTGRAG GM++ ++ + Q+ + Sbjct: 299 VATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQ 358 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR-ILQDPLFLDSIQGDEK 401 + + N + E I+ + QR ++ D L D+ + EK Sbjct: 359 VEKHINSKI--EAVGHKYQIQSQPKQREVITDKLKTDTSKKQEK 400 >gi|197123043|ref|YP_002134994.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K] gi|196172892|gb|ACG73865.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K] Length = 651 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 189/338 (55%), Gaps = 11/338 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T VQ A P KDV+V ++TG+GKT AF + + + + R P+ Sbjct: 34 AVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILERI--PDGRRKPS- 90 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA+QV E+ L + V GG S+ + L+ GA IVVGTPG Sbjct: 91 ---ALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAGAEIVVGTPG 147 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHIR K L + + LDEADEML++GF +++ ILD P + L+FSAT+ I Sbjct: 148 RIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLLFSATVPADI 207 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVF 250 + +Y D + ++ + + +I+ V+ D N+L G + AI+F Sbjct: 208 EQIIHDYLTDPETILLSGDEYKVENIN--NVMYPTVDAYPKPRNLLYMIGMEEPEAAIIF 265 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR+ S T VL + + L+G+L Q+ER + ++ G R +ATD+AARGID+ Sbjct: 266 CNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATDIAARGIDI 325 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DL VI+ L +P LHR GRTGR G+KG S+ ++ Sbjct: 326 SDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLV 363 >gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Prochlorococcus marinus str. NATL2A] gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. NATL2A] Length = 589 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 161/534 (30%), Positives = 266/534 (49%), Gaps = 40/534 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N + + + +S++GY + T +Q+A + L +D++ AQTG+GKT AF L + L Sbjct: 42 NFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILERLKKN 101 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 P L +APTRELA+QV A V GG + L+ G Sbjct: 102 ------VGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRRG 155 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +VVGTPGR+ DH+R K LN SHL +VLDEADEML +GF DD+E+IL+ P++R++++ Sbjct: 156 VDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLVL 215 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I L+K Y + I + + I R + V + NA+ +L Sbjct: 216 FSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVYKVNALQRVLEAVSE 275 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F T+A + L + + V L+G++ Q +R ++ +R G + +ATDVA Sbjct: 276 EGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVATDVA 335 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARG+D+ + LVI+ ++ + E +HR GRTGRAGR G ++ FV P+ ER F Sbjct: 336 ARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPR------ERSFLSN 389 Query: 364 NVSVVWEP-----APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKH----- 411 V +P P + I +++ + S + D + ++L L K+ Sbjct: 390 LERAVGQPIEKMDIPDNDLINNNRIKKLQAKLIKAASTERDNPEEANILEELIKNVEKEL 449 Query: 412 --DPE-------KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462 DP+ +A GF + G + I + + R+ RD+++ + G DN Sbjct: 450 DIDPKDLTLAALNLAVGFNALLEKG--NEDWIRQSAQRNTRNDRRDNNKFKQRRRGDFDN 507 Query: 463 FKGSSW---FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + F + VG + + + L+ + +G+ +SIG IR+ + + V++ Sbjct: 508 NRLEDEMDRFRVEVGHRDRVKPGNLVGAIANEAGLKGRSIGRIRIFENYSLVDL 561 >gi|315230959|ref|YP_004071395.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP] gi|315183987|gb|ADT84172.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP] Length = 389 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/381 (35%), Positives = 216/381 (56%), Gaps = 22/381 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+ +G+ T +Q ++ LR + D++ +QTG+GKT +F L L ++ E +R Sbjct: 22 AVRRKGFSEPTDIQREVIPLFLRGDADIVGQSQTGTGKTASFALPLVD-VINEYER---- 76 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ + PTRELA+QV E++ L K + V GG + + R L+ GAHIVVGTP Sbjct: 77 -EVQAIILTPTRELALQVADEIKSLRGKKRIKVLSVYGGQPIGPQIRALRKGAHIVVGTP 135 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHIR L + ++ +LDEAD MLD+GF DDI I +P+ +R+LMFSAT+ Sbjct: 136 GRVLDHIRRGTLRLDGIQYFILDEADRMLDMGFIDDIRAIFRETPRDKRVLMFSATMPRE 195 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVF 250 + LAK Y K+ + +S+ + ++ + V + + + + IL ++G IVF Sbjct: 196 VLKLAKRYMKEYELIRTSSDEPVPNLVEQEYIEVVPARKISVLERILNSEFYG----IVF 251 Query: 251 CSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 C T+ R T++LAE L + AL+G++SQ+ R AL + + + +ATDVAAR Sbjct: 252 CQTK----RETRILAEKLARIGYSAEALNGDMSQKSRERALMRFKRRKINILVATDVAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GID+ D+ +++ L N E +HR GRTGRAG+KG ++ I RR + A VS Sbjct: 308 GIDVQDITHIVNYSLPQNAEMYIHRIGRTGRAGKKGKAITFIMPGEYRRLRYIENIAKVS 367 Query: 367 VVWEP-APSVEAIRERDAQRI 386 + S++ + RD+++I Sbjct: 368 IKKSKLQESIDREKRRDSRKI 388 >gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase domain protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 501 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 126/346 (36%), Positives = 196/346 (56%), Gaps = 16/346 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RF 69 AL G + +QE + L D++ A+TG+GKT+AFG+ + ++ + D + Sbjct: 30 ALDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIPILQKVVLKTDEGFDQL 89 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P P AL ++PTRELA QVG +L V GGV + L+ G +VV Sbjct: 90 DPKDKPQALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYDDQLDALKKGVDVVV 149 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL D + L++SH++ VLDEADEMLDLGF D++ +LD +P R+ +MFSAT+ Sbjct: 150 GTPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLPDVQALLDRTPASRQTMMFSATM 209 Query: 190 SPAITTLAKNYQKDAVRVNIASENR-------QHSDIDYRAVLVALSDRDNAIVNILRYH 242 I +LA++ V NI +E R Q + Y+A + D+ I +L+ Sbjct: 210 PAVIMSLARSRLNQPV--NIRAEGRDAQATVPQTTQFIYQAHEL---DKPEMIGKMLQSE 264 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + +VF T+ + R L + F+ +L G+L+Q +R ++ R+ + +V +ATD Sbjct: 265 GMRKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRNDKIQVLVATD 324 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ D+ V++ E+ +PE +HR GRTGRAG +G++V ++ Sbjct: 325 VAARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHEGVAVTLV 370 >gi|237730082|ref|ZP_04560563.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2] gi|226908688|gb|EEH94606.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2] Length = 642 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 142/420 (33%), Positives = 219/420 (52%), Gaps = 15/420 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLRI 423 P+ + + +R ++ ++ + LLAK PE+ +AA L++ Sbjct: 371 VELPNADLLGKRRLEKFAAK--VQQQLESSDLDQYRALLAKMQPEEELDIETLAAALLKM 428 >gi|218704863|ref|YP_002412382.1| ATP-dependent RNA helicase DbpA [Escherichia coli UMN026] gi|293404872|ref|ZP_06648864.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412] gi|298380516|ref|ZP_06990115.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302] gi|300900110|ref|ZP_07118304.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1] gi|331672872|ref|ZP_08373658.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280] gi|218431960|emb|CAR12845.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli UMN026] gi|291427080|gb|EFF00107.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412] gi|298277958|gb|EFI19472.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302] gi|300356389|gb|EFJ72259.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1] gi|331070093|gb|EGI41462.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280] Length = 457 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L] gi|81689748|sp|Q63GX5|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L] Length = 528 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTP Sbjct: 73 ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A+ + + + + ++ +I + V + + + +L + AIVF Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365 + V + ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R + Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421 AP+++ E QR++ + L +I+ + K++ + +L ++D + A L Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419 Query: 422 RIHRAGLCAPEEITPVSLVS 441 ++ + + TP++L S Sbjct: 420 KM----MTKEPDTTPIALTS 435 >gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] Length = 503 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 155/497 (31%), Positives = 254/497 (51%), Gaps = 34/497 (6%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M +F+++ Q + +A+S+ G+ T +Q + L D++ AQTG+GKT AFG+ L Sbjct: 1 MALFQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + D A L IAPTRELAVQV EL + V V GG + R+ Sbjct: 61 IEKVDVNVD------AIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQI 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L+ HI+VGTPGR+ DHI + L + + V+LDEADEML++GF +DIE IL + P+ Sbjct: 115 RALKKHPHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPE 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + L+FSAT+ I +A+ + + V + ++ +I + V + + + + Sbjct: 175 NHQTLLFSATMPTPIRRIAEKFMNEPKVVKVQAKEVTMPNITQYYLEVQEKRKFDILTRL 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + AI+F T+ V ++ L + + G+L+Q +R + L+ ++G V Sbjct: 235 LDMQSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP------QN 351 +ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G ++ FV P N Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHN 354 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLL 408 ++R +R P+++ E QRI D L QG+ K++ + LL Sbjct: 355 IERTTKRKMERLT-------PPTLDEAME-GQQRIAADKLTESVTQGNLSYYKQLAEELL 406 Query: 409 AKHDPEKIAAGFLRIH-RAGLCAPEEIT--PVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465 +HD + A +++ + +P ++T P + G D ++ GG SR N K Sbjct: 407 EEHDSVSLVAAAIKLFTKEPNESPIQLTAEPPVIAKG-----DKNKRGNGGGRSRSNSKN 461 Query: 466 SSWFSLSVGSKQKAEAR 482 S + SK+ + R Sbjct: 462 YSQQNRRGNSKRFGDKR 478 >gi|91074155|gb|ABE09036.1| Cold-shock DEAD-box protein A [Escherichia coli UTI89] Length = 651 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 39 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 93 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 94 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 273 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 393 VELPNAELLGKR 404 >gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] Length = 514 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/434 (31%), Positives = 235/434 (54%), Gaps = 30/434 (6%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L+ KD++ AQTG+GKT AFGL L + + + Sbjct: 2 GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ------GI 55 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 IAPTRELA+QVG EL + V + GG ++R+ R L+ HI+VGTPGR+ DH Sbjct: 56 VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDH 115 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I K L + +++ VVLDEADEML++GF +DIE IL P+ + L+FSAT+ I +A+ Sbjct: 116 INRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAE 175 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + + + + ++ +I + V + + + +L + AIVF T+ V Sbjct: 176 RFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVD 235 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 ++ L + + G+L+Q +R + L+ ++G V +ATDVAARG+D+ + V + Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 295 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANVSVVWEP 371 ++ +PE+ +HR GRTGRAG+KG++ +FV P +N++R +R + Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD------- 348 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAG 427 AP+++ E QR++ + L +I+ + K++ + +L ++D + A L++ Sbjct: 349 APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAALKM---- 402 Query: 428 LCAPEEITPVSLVS 441 + + TP++L S Sbjct: 403 MTKEPDTTPIALTS 416 >gi|36787780|emb|CAE16895.1| inducible ATP-independent RNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 644 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 167/553 (30%), Positives = 267/553 (48%), Gaps = 32/553 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL + GY + +Q+ + L +DVL AQTGSGKT AF L L + AE Sbjct: 23 ILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNINAE----- 77 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV ++ V V GG + R L+ G IVV Sbjct: 78 -LKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRALRQGPQIVV 136 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 137 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 196 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + D V I + DI V ++ A+V L AI+ Sbjct: 197 PEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 256 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 257 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 316 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 317 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 376 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI 423 P+ E + +R +R + ++ + LL+K P E +AA L++ Sbjct: 377 VELPNAELLSQRRLERFAAN--VQQQLESSDLDQYRTLLSKLQPAEDLDIETLAAALLKM 434 Query: 424 HRAGLCAPEEITPVSLVSGRDRF--RDDSR--AFKVGGGSRDNFKGS-------SWFSLS 472 + P + P + R F RDD R F G D + + + Sbjct: 435 AQGE--RPLILPPDPVRRPRREFNERDDRRRNGFDDRGERSDRPRRERRDVGEMELYRIE 492 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLD 528 VG E R ++ + I+ + IG I++ + +E+ D + RT L+ Sbjct: 493 VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLLSHFTRTRILN 552 Query: 529 KGIQLKYLGGEKP 541 K + ++ +G +P Sbjct: 553 KPMNMQLMGDAQP 565 >gi|332998804|gb|EGK18400.1| cold-shock DEAD box protein A [Shigella flexneri VA-6] Length = 629 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|315617245|gb|EFU97854.1| cold-shock DEAD box protein A [Escherichia coli 3431] Length = 632 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|81242624|gb|ABB63334.1| inducible ATP-independent RNA helicase [Shigella dysenteriae Sd197] Length = 646 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGQQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|89109927|ref|AP_003707.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. W3110] gi|90111550|ref|NP_417631.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|110643403|ref|YP_671133.1| ATP-dependent RNA helicase DeaD [Escherichia coli 536] gi|161485815|ref|NP_708963.3| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 301] gi|161486111|ref|NP_755783.2| ATP-dependent RNA helicase DeaD [Escherichia coli CFT073] gi|161486429|ref|NP_838673.2| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 2457T] gi|161984848|ref|YP_409545.2| ATP-dependent RNA helicase DeaD [Shigella boydii Sb227] gi|161986443|ref|YP_312118.2| ATP-dependent RNA helicase DeaD [Shigella sonnei Ss046] gi|170018586|ref|YP_001723540.1| ATP-dependent RNA helicase DeaD [Escherichia coli ATCC 8739] gi|170082699|ref|YP_001732019.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|170684314|ref|YP_001745436.1| ATP-dependent RNA helicase DeaD [Escherichia coli SMS-3-5] gi|191172194|ref|ZP_03033737.1| cold-shock DEAD box protein A [Escherichia coli F11] gi|193062213|ref|ZP_03043309.1| cold-shock DEAD box protein A [Escherichia coli E22] gi|194427708|ref|ZP_03060255.1| cold-shock DEAD box protein A [Escherichia coli B171] gi|194438758|ref|ZP_03070844.1| cold-shock DEAD box protein A [Escherichia coli 101-1] gi|215488480|ref|YP_002330911.1| ATP-dependent RNA helicase DeaD [Escherichia coli O127:H6 str. E2348/69] gi|218550447|ref|YP_002384238.1| ATP-dependent RNA helicase DeaD [Escherichia fergusonii ATCC 35469] gi|218560234|ref|YP_002393147.1| ATP-dependent RNA helicase DeaD [Escherichia coli S88] gi|218691454|ref|YP_002399666.1| ATP-dependent RNA helicase DeaD [Escherichia coli ED1a] gi|218696869|ref|YP_002404536.1| ATP-dependent RNA helicase DeaD [Escherichia coli 55989] gi|238902266|ref|YP_002928062.1| ATP-dependent RNA helicase [Escherichia coli BW2952] gi|253772002|ref|YP_003034833.1| ATP-dependent RNA helicase DeaD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163106|ref|YP_003046214.1| ATP-dependent RNA helicase DeaD [Escherichia coli B str. REL606] gi|256018918|ref|ZP_05432783.1| ATP-dependent RNA helicase DeaD [Shigella sp. D9] gi|256024262|ref|ZP_05438127.1| ATP-dependent RNA helicase DeaD [Escherichia sp. 4_1_40B] gi|260845977|ref|YP_003223755.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str. 12009] gi|293416596|ref|ZP_06659235.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185] gi|301025993|ref|ZP_07189475.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1] gi|306816494|ref|ZP_07450626.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101] gi|307139849|ref|ZP_07499205.1| ATP-dependent RNA helicase DeaD [Escherichia coli H736] gi|312968499|ref|ZP_07782708.1| cold-shock DEAD box protein A [Escherichia coli 2362-75] gi|312972567|ref|ZP_07786740.1| cold-shock DEAD box protein A [Escherichia coli 1827-70] gi|331659451|ref|ZP_08360393.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206] gi|331664776|ref|ZP_08365681.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143] gi|331669991|ref|ZP_08370836.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271] gi|71154182|sp|P0A9P7|DEAD_ECOL6 RecName: Full=Cold-shock DEAD box protein A; AltName: Full=ATP-dependent RNA helicase deaD gi|71154193|sp|P0A9P6|DEAD_ECOLI RecName: Full=Cold-shock DEAD box protein A; AltName: Full=ATP-dependent RNA helicase deaD; AltName: Full=Translation factor W2 gi|71154222|sp|P0A9P8|DEAD_SHIFL RecName: Full=Cold-shock DEAD box protein A; AltName: Full=ATP-dependent RNA helicase deaD gi|85675958|dbj|BAE77208.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr. W3110] gi|87082221|gb|AAC76196.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|110344995|gb|ABG71232.1| probable ATP-dependent RNA helicase DeaD [Escherichia coli 536] gi|169753514|gb|ACA76213.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739] gi|169890534|gb|ACB04241.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|170522032|gb|ACB20210.1| cold-shock DEAD box protein A [Escherichia coli SMS-3-5] gi|190907504|gb|EDV67100.1| cold-shock DEAD box protein A [Escherichia coli F11] gi|192932433|gb|EDV85031.1| cold-shock DEAD box protein A [Escherichia coli E22] gi|194414216|gb|EDX30491.1| cold-shock DEAD box protein A [Escherichia coli B171] gi|194422230|gb|EDX38231.1| cold-shock DEAD box protein A [Escherichia coli 101-1] gi|215266552|emb|CAS10991.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69] gi|218353601|emb|CAU99787.1| ATP-dependent RNA helicase [Escherichia coli 55989] gi|218357988|emb|CAQ90634.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469] gi|218367003|emb|CAR04774.1| ATP-dependent RNA helicase [Escherichia coli S88] gi|218429018|emb|CAR09825.1| ATP-dependent RNA helicase [Escherichia coli ED1a] gi|238860045|gb|ACR62043.1| ATP-dependent RNA helicase [Escherichia coli BW2952] gi|242378707|emb|CAQ33497.1| DeaD, DEAD-box RNA helicase [Escherichia coli BL21(DE3)] gi|253323046|gb|ACT27648.1| DEAD/DEAH box helicase domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975007|gb|ACT40678.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606] gi|253979163|gb|ACT44833.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)] gi|257761124|dbj|BAI32621.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str. 12009] gi|260447809|gb|ACX38231.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1] gi|291431952|gb|EFF04935.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185] gi|299879888|gb|EFI88099.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1] gi|305850059|gb|EFM50518.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101] gi|307555258|gb|ADN48033.1| cold-shock DeaD box ATP-dependent RNA helicase [Escherichia coli ABU 83972] gi|307625237|gb|ADN69541.1| ATP-dependent RNA helicase DeaD [Escherichia coli UM146] gi|309703590|emb|CBJ02930.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli ETEC H10407] gi|310332509|gb|EFP99722.1| cold-shock DEAD box protein A [Escherichia coli 1827-70] gi|312286717|gb|EFR14628.1| cold-shock DEAD box protein A [Escherichia coli 2362-75] gi|313648596|gb|EFS13038.1| cold-shock DEAD box protein A [Shigella flexneri 2a str. 2457T] gi|315137750|dbj|BAJ44909.1| ATP-dependent RNA helicase DeaD [Escherichia coli DH1] gi|320181438|gb|EFW56356.1| Cold-shock DEAD-box protein A [Shigella boydii ATCC 9905] gi|320194648|gb|EFW69278.1| Cold-shock DEAD-box protein A [Escherichia coli WV_060327] gi|323162856|gb|EFZ48691.1| cold-shock DEAD box protein A [Escherichia coli E128010] gi|323165120|gb|EFZ50910.1| cold-shock DEAD box protein A [Shigella sonnei 53G] gi|323173578|gb|EFZ59207.1| cold-shock DEAD box protein A [Escherichia coli LT-68] gi|323189215|gb|EFZ74499.1| cold-shock DEAD box protein A [Escherichia coli RN587/1] gi|323936142|gb|EGB32436.1| DEAD/DEAH box helicase [Escherichia coli E1520] gi|323941736|gb|EGB37915.1| DEAD/DEAH box helicase [Escherichia coli E482] gi|323951318|gb|EGB47193.1| DEAD/DEAH box helicase [Escherichia coli H252] gi|323957689|gb|EGB53403.1| DEAD/DEAH box helicase [Escherichia coli H263] gi|323961066|gb|EGB56681.1| DEAD/DEAH box helicase [Escherichia coli H489] gi|323966344|gb|EGB61778.1| DEAD/DEAH box helicase [Escherichia coli M863] gi|323970273|gb|EGB65544.1| DEAD/DEAH box helicase [Escherichia coli TA007] gi|323979119|gb|EGB74197.1| DEAD/DEAH box helicase [Escherichia coli TW10509] gi|324115232|gb|EGC09196.1| DEAD/DEAH box helicase [Escherichia fergusonii B253] gi|324119529|gb|EGC13411.1| DEAD/DEAH box helicase [Escherichia coli E1167] gi|325498745|gb|EGC96604.1| ATP-dependent RNA helicase [Escherichia fergusonii ECD227] gi|327251943|gb|EGE63629.1| cold-shock DEAD box protein A [Escherichia coli STEC_7v] gi|330909220|gb|EGH37734.1| cold-shock DEAD-box protein A [Escherichia coli AA86] gi|331054033|gb|EGI26062.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206] gi|331058024|gb|EGI30006.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143] gi|331062904|gb|EGI34818.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271] gi|332086106|gb|EGI91268.1| cold-shock DEAD box protein A [Shigella boydii 5216-82] gi|332090717|gb|EGI95811.1| cold-shock DEAD box protein A [Shigella boydii 3594-74] gi|332752322|gb|EGJ82712.1| cold-shock DEAD box protein A [Shigella flexneri 4343-70] gi|332752849|gb|EGJ83234.1| cold-shock DEAD box protein A [Shigella flexneri K-671] gi|332754390|gb|EGJ84756.1| cold-shock DEAD box protein A [Shigella flexneri 2747-71] gi|332765159|gb|EGJ95386.1| csdA, DEAD-box RNA helicase [Shigella flexneri 2930-71] gi|332999241|gb|EGK18827.1| cold-shock DEAD box protein A [Shigella flexneri K-272] gi|333000407|gb|EGK19990.1| cold-shock DEAD box protein A [Shigella flexneri K-218] gi|333014540|gb|EGK33887.1| cold-shock DEAD box protein A [Shigella flexneri K-304] gi|333014963|gb|EGK34307.1| cold-shock DEAD box protein A [Shigella flexneri K-227] Length = 629 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|300929852|ref|ZP_07145298.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1] gi|300462214|gb|EFK25707.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1] Length = 646 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|294139293|ref|YP_003555271.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12] gi|293325762|dbj|BAJ00493.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12] Length = 469 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 194/338 (57%), Gaps = 8/338 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I E L GY ++T++Q L L +DV+ +TGSGKT AFGL L L + Sbjct: 21 PELI-ENLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLDVKRF 79 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R +L + PTRELA QV +E+ L + V GGV + + L++GAH Sbjct: 80 RIQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAH 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ LN+ ++ +VLDEAD ML++GF D+++I+ P++R+ L+FS Sbjct: 134 IIVGTPGRIIDHLSRDLLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQTLLFS 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I +A+ V V +AS + ++ + + + DR A+ +L H + Sbjct: 194 ATFPKQIQKVAEQIMFKPVMVKVASTHDSNTIDQHFYQIDSNKDRQKALRLLLLQHRPDS 253 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VFC+T+ LA F VVAL G+L Q++R L + A + +ATDVAAR Sbjct: 254 AVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAAR 313 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 G+D+ L++VI+ E + + E +HR GRTGRAG KG + Sbjct: 314 GLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGTA 351 >gi|262042721|ref|ZP_06015875.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039946|gb|EEW41063.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 634 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 171/561 (30%), Positives = 273/561 (48%), Gaps = 40/561 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + E Sbjct: 33 ILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 87 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 88 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 146 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248 AI + + + K+ V I S DI ++ A R N A+V L AI Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 265 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 266 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 325 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSV 367 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR R + R +++ Sbjct: 326 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTI 384 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---------EKIAA 418 P+ E + +R ++ ++ + LLAK P E +AA Sbjct: 385 PEVELPNAELLSKRRLEKFAAK--VQQQLESSDLDQYRALLAKIQPTAEGEELDVETLAA 442 Query: 419 GFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--------- 466 L++ R+ + P+ R D R + G R + + Sbjct: 443 ALLKMAQGERSLIVPPDAPMRPRREFRDRDDRFDRRGDRNDRGPRGDREDRPKRERRDVG 502 Query: 467 --SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDL 520 + + VG E R ++ + I+ + IG I++ + +E + + + Sbjct: 503 DMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGIPGEVLQH 562 Query: 521 LRRTVKLDKGIQLKYLGGEKP 541 RT L+K + ++ LG +P Sbjct: 563 FTRTRILNKPMNMQLLGDAQP 583 >gi|229593065|ref|YP_002875184.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens SBW25] gi|229364931|emb|CAY53031.1| ATP-independent RNA helicase [Pseudomonas fluorescens SBW25] Length = 461 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 200/359 (55%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GYV +T +Q L L+ D++ A+TGSGKT AFG+ L + + N R+ A Sbjct: 21 LDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A+ + V GGVS+ + L++GAH++VGTPG Sbjct: 78 ---LVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIASLEHGAHVIVGTPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D IE I+ +P +R+ L+FSAT +I Sbjct: 135 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPRRQTLLFSATYPVSI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA + + +V + HSD I+ R ++ +R A+ +L + + + FC Sbjct: 195 KQLASKFMRAPQQVKAEAF---HSDDQIEQRFYEISPEERMEAVTKVLAHFRPASCVAFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 252 FTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG G+++ ++ + RA+ + + + W+ Sbjct: 312 SLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIEQLQKSPLNWD 370 >gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3] gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3] Length = 500 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/340 (36%), Positives = 197/340 (57%), Gaps = 7/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++++ GY T +Q + L +D++ AQTG+GKT AFGL + L+ + DR PA+ Sbjct: 24 SVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEMLMKQADR--PAN 81 Query: 74 -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTREL Q+G L KT + + +GG S+++++ L+ G ++V TP Sbjct: 82 RTTRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQLQLEKGTDVLVATP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I +++S + +VLDEAD+MLDLGF D+ I P KR+ L+FSAT+ A Sbjct: 142 GRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAKRQTLLFSATMPKA 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I+ LA N+ D ++V + + ++ Y + +D+ + + L + +IVF Sbjct: 202 ISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNENPDGRSIVFL 261 Query: 252 STRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K L EH+ F+V ++ G SQ +R AL+ +DG +V +ATDVAARGID+ Sbjct: 262 RTKHGAEKLYKHL-EHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVATDVAARGIDI 320 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 P + V + +L P+ +HR GRT RAGR G+++ F P Sbjct: 321 PAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAP 360 >gi|330944943|gb|EGH46750.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. pisi str. 1704B] Length = 420 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 48 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 104 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 105 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 161 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 162 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 221 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 222 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 278 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 279 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 338 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 339 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 397 >gi|307313131|ref|ZP_07592757.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|306907042|gb|EFN37550.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|315062470|gb|ADT76797.1| ATP-dependent RNA helicase [Escherichia coli W] gi|323376942|gb|ADX49210.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11] Length = 629 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713] Length = 492 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/473 (31%), Positives = 243/473 (51%), Gaps = 35/473 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +Q + L DV+ AQTG+GKT AFGL + L + + Sbjct: 14 KAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131 A+ I+PTRELA+Q EL L + V V GG + R+ + L Q+ HI+VGT Sbjct: 72 ----AVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHTPHILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI+ +N++H+K ++LDEADEMLD+GF DDIE I+ + P +R+ L+FSAT+ Sbjct: 128 PGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + + V I ++ +D V ++ + + ++ + IVF Sbjct: 188 EILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V ++ L + + G+L+QQ R N L+ ++G + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE------ 362 + V + ++ +PE+ +HR GRTGRAG G SV FV P M R E+L ++ Sbjct: 308 GVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLK 367 Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + + + + + +++ I++ L D+ + LL ++D ++ A Sbjct: 368 PPTQDEAFIGQVSSALDDIKD----------LIADTDTERYEAQAQALLEQYDAVEVVAA 417 Query: 420 FLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 FL + P +ITP + R + R + ++ G DNFK S F+ Sbjct: 418 FLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGN-YRRGN---DNFKRSKRFN 466 >gi|331654768|ref|ZP_08355768.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD) [Escherichia coli M718] gi|331048150|gb|EGI20227.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD) [Escherichia coli M718] Length = 651 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 39 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 93 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 94 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 273 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 393 VELPNAELLGKR 404 >gi|308446500|ref|XP_003087194.1| hypothetical protein CRE_11658 [Caenorhabditis remanei] gi|308260015|gb|EFP03968.1| hypothetical protein CRE_11658 [Caenorhabditis remanei] Length = 526 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 211/379 (55%), Gaps = 15/379 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 12 ESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAGQDTF 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + DR + P L I+PTRELA QV ++ + ++ GV VA +GG+ ++ + L Sbjct: 72 VPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRVAAIMGGMPFGKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + + + + A+++DEAD MLDLGF +D+E I D + +++ Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQIKLDLVDALIVDEADRMLDLGFSEDLEAISDLALNRKQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT +P I LA+ + R+ I + + ++DI + + + L Sbjct: 191 TLMFSATFAPRIINLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLN 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 EEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAER 358 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ + + + RA Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYRERGKIRALE 370 Query: 359 LFREANVSVV----WEPAP 373 + EA +SV EP+P Sbjct: 371 DYLEARLSVSEIEGLEPSP 389 >gi|218706784|ref|YP_002414303.1| ATP-dependent RNA helicase DeaD [Escherichia coli UMN026] gi|218433881|emb|CAR14798.1| ATP-dependent RNA helicase [Escherichia coli UMN026] gi|284923186|emb|CBG36280.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli 042] Length = 655 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 39 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 93 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 94 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 273 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 393 VELPNAELLGKR 404 >gi|110807031|ref|YP_690551.1| ATP-dependent RNA helicase DeaD [Shigella flexneri 5 str. 8401] gi|157154820|ref|YP_001464636.1| ATP-dependent RNA helicase DeaD [Escherichia coli E24377A] gi|157162647|ref|YP_001459965.1| ATP-dependent RNA helicase DeaD [Escherichia coli HS] gi|187731310|ref|YP_001881921.1| ATP-dependent RNA helicase DeaD [Shigella boydii CDC 3083-94] gi|188491860|ref|ZP_02999130.1| cold-shock DEAD box protein A [Escherichia coli 53638] gi|237706085|ref|ZP_04536566.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA] gi|254038328|ref|ZP_04872386.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43] gi|293412537|ref|ZP_06655260.1| conserved hypothetical protein [Escherichia coli B354] gi|331643862|ref|ZP_08344993.1| cold-shock DEAD-box protein A [Escherichia coli H736] gi|331648963|ref|ZP_08350051.1| cold-shock DEAD-box protein A [Escherichia coli M605] gi|331674700|ref|ZP_08375459.1| cold-shock DEAD-box protein A [Escherichia coli TA280] gi|332280007|ref|ZP_08392420.1| cold-shock DEAD-box protein A [Shigella sp. D9] gi|26110171|gb|AAN82357.1|AE016767_117 Cold-shock DEAD-box protein A [Escherichia coli CFT073] gi|110616579|gb|ABF05246.1| inducible ATP-independent RNA helicase [Shigella flexneri 5 str. 8401] gi|157068327|gb|ABV07582.1| cold-shock DEAD box protein A [Escherichia coli HS] gi|157076850|gb|ABV16558.1| cold-shock DEAD box protein A [Escherichia coli E24377A] gi|187428302|gb|ACD07576.1| cold-shock DEAD box protein A [Shigella boydii CDC 3083-94] gi|188487059|gb|EDU62162.1| cold-shock DEAD box protein A [Escherichia coli 53638] gi|226839952|gb|EEH71973.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43] gi|226899125|gb|EEH85384.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA] gi|281602546|gb|ADA75530.1| Cold-shock DEAD-box protein A [Shigella flexneri 2002017] gi|291469308|gb|EFF11799.1| conserved hypothetical protein [Escherichia coli B354] gi|294492243|gb|ADE90999.1| cold-shock DEAD box protein A [Escherichia coli IHE3034] gi|331037333|gb|EGI09557.1| cold-shock DEAD-box protein A [Escherichia coli H736] gi|331042710|gb|EGI14852.1| cold-shock DEAD-box protein A [Escherichia coli M605] gi|331068139|gb|EGI39535.1| cold-shock DEAD-box protein A [Escherichia coli TA280] gi|332102359|gb|EGJ05705.1| cold-shock DEAD-box protein A [Shigella sp. D9] Length = 651 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 39 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 93 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 94 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 273 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 393 VELPNAELLGKR 404 >gi|308048143|ref|YP_003911709.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] gi|307630333|gb|ADN74635.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] Length = 444 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/391 (35%), Positives = 207/391 (52%), Gaps = 35/391 (8%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--PL 76 G+ T +Q+ + + KD+L S++TGSGKT+AF L L+ R P S P Sbjct: 20 GFAEATEIQQKAIPTAIAGKDLLASSRTGSGKTLAFLLPAMQRLI----RSKPLSKRDPR 75 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 L +APTRELA QV +L + A T + +GG +++ + L H VV TPGRL Sbjct: 76 VLILAPTRELAKQVYGQLRLVVANTSYKSLLILGGEDFNQQSKALARDPHFVVATPGRLA 135 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATIS-PAIT 194 DH+ L + L+ ++LDEAD MLDLGF D ++ I ++ +KR+ LMFSAT+ A+ Sbjct: 136 DHLEHGHLYLHGLEMLILDEADRMLDLGFADQLQAIHKAADHRKRQTLMFSATLDHAAVN 195 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCST 253 + R+ I SE HSDI +R + L ++ + +L K I+F +T Sbjct: 196 QFGAQLLNNPTRIRIDSEAEIHSDIHHRMLFSDHLDHKEAQLKALLEKQDFKQLILFTAT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R R +L+E + +ALSGEL+Q RS +Q G+A++ I TDVA+RG+D+P + Sbjct: 256 RGDTDRLAVLLSEWGYSTLALSGELNQTARSQIMQDFAAGKAKILITTDVASRGLDIPQV 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWEPA 372 V++ +L +PE +HR GRTGRAG KG + ++ P++ W Sbjct: 316 SHVVNFDLPKHPEEYVHRVGRTGRAGAKGDAFSLVGPKD-----------------WPSF 358 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403 +EA LQ PL ++I+G E K Sbjct: 359 KKLEA--------FLQQPLAFEAIEGLEAKF 381 >gi|170681328|ref|YP_001743833.1| ATP-dependent RNA helicase DbpA [Escherichia coli SMS-3-5] gi|170519046|gb|ACB17224.1| ATP-independent RNA helicase DbpA [Escherichia coli SMS-3-5] Length = 457 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETFSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|163789144|ref|ZP_02183587.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium ALC-1] gi|159875557|gb|EDP69618.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium ALC-1] Length = 638 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 121/351 (34%), Positives = 201/351 (57%), Gaps = 10/351 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+++ G+ + VQE + L E KD++ AQTG+GKT AFG + + + + Sbjct: 16 AITDLGFEKPSEVQEKAIPLLLEEDKDLVALAQTGTGKTAAFGFPMLQKIDID------S 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L ++PTREL +Q+ EL+ Y K G+ V GG S+ + R ++ GA I+V Sbjct: 70 RTTQGLILSPTRELCLQITNELKQYGKYCK-GLNVTAIYGGASITDQARSVKRGAQIIVA 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D I K ++IS ++ VLDEADEML++GF +DI IL +P + +FSAT+ Sbjct: 129 TPGRMKDMISRKLVDISKIQYSVLDEADEMLNMGFYEDITDILSHTPDDKSTWLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 ++T+AK + D + + + N +++ + LV DR A+ + + +++F Sbjct: 189 KEVSTIAKKFMYDPTEITVGNRNESTNNVSHEYYLVNARDRYQALKRLSDANPDIFSVIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ + + L E + AL G+LSQ +R ++ R+ + ++ +ATDVAARGID+ Sbjct: 249 CRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDIVMKSFRNKQIQMLVATDVAARGIDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 D+ VI+ +L E HRSGRTGRAG+ G+S+ ++ ++ R+ + + R Sbjct: 309 DDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVSKSETRKIKSIER 359 >gi|194433764|ref|ZP_03066039.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012] gi|194418027|gb|EDX34121.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012] gi|332086479|gb|EGI91626.1| cold-shock DEAD box protein A [Shigella dysenteriae 155-74] Length = 603 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2] Length = 457 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 121/332 (36%), Positives = 189/332 (56%), Gaps = 2/332 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ ++GY + +Q+ + L KD+L +AQTG+GKT F L L LL + R + + Sbjct: 14 QAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLHRLL--DGRPAAS 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA QV ++ + AV GGV ++ + + L++G +++ TP Sbjct: 72 NCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKALRSGVDVLIATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + S L+ +VLDEAD MLD+GF DI+ IL P KR+ L+FSAT S Sbjct: 132 GRLLDLYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQTLLFSATFSSE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 ITTLA+ + +V+ A N + V + S + A++++++ +G K +VF Sbjct: 192 ITTLAQTITNNPEKVSTAPANTTVETVQQHLVPIDKSKKTAALISLIKQNGWKQVLVFSR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R L+ A+ G SQ R+ AL + G V +ATD+AARGID+ + Sbjct: 252 TKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEIDVLVATDIAARGIDINE 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 L +VI+ +L + P + +HR GRTGRAG G + Sbjct: 312 LPIVINIDLPNTPADYVHRIGRTGRAGASGQA 343 >gi|323172286|gb|EFZ57923.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68] Length = 457 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLRFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAVISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSILPLEAE 381 >gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741] gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741] Length = 499 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/473 (31%), Positives = 243/473 (51%), Gaps = 35/473 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +Q + L DV+ AQTG+GKT AFGL + L + + Sbjct: 21 KAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQ-- 78 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131 A+ I+PTRELA+Q EL L + V V GG + R+ + L Q+ HI+VGT Sbjct: 79 ----AVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHTPHILVGT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI+ +N++H+K ++LDEADEMLD+GF DDIE I+ + P +R+ L+FSAT+ Sbjct: 135 PGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPK 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + + V I ++ +D V ++ + + ++ + IVF Sbjct: 195 EILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFG 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V ++ L + + G+L+QQ R N L+ ++G + +ATDVAARG+D+ Sbjct: 255 RTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDIS 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE------ 362 + V + ++ +PE+ +HR GRTGRAG G SV FV P M R E+L ++ Sbjct: 315 GVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLK 374 Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + + + + + +++ I++ L D+ + LL ++D ++ A Sbjct: 375 PPTQDEAFIGQVSSALDDIKD----------LIADTDTERYEAQAQALLEQYDAVEVVAA 424 Query: 420 FLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 FL + P +ITP + R + R + ++ G DNFK S F+ Sbjct: 425 FLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGN-YRRGN---DNFKRSKRFN 473 >gi|150025863|ref|YP_001296689.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum JIP02/86] gi|149772404|emb|CAL43884.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacterium psychrophilum JIP02/86] Length = 644 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/351 (35%), Positives = 201/351 (57%), Gaps = 10/351 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDV-LVS-AQTGSGKTVAFGLALASTLLAENDRFSP 71 A+ + G+ N T VQE + P L EKD+ LV+ AQTG+GKT AFG + + A N Sbjct: 16 AIIDLGFENPTEVQEKAI-PMLLEKDIDLVALAQTGTGKTAAFGFPVIQKIDANNRNTQ- 73 Query: 72 ASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL ++PTREL +Q+ EL+ + + G+ V GG S+ + RD++ GA I+V Sbjct: 74 -----ALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIKRGAQIIVA 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D I + ++IS + +LDEADEML++GF +DI IL ++P ++ +FSAT+ Sbjct: 129 TPGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDEKNTWLFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + + K + D + + + ++N + + + LV DR A+ + + ++VF Sbjct: 189 AEVARIGKQFMTDPIEITVGAKNSGSATVSHEYYLVNARDRYEALKRLADANPDIFSVVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ + L E + AL G+LSQ +R ++ R + ++ +ATDVAARGID+ Sbjct: 249 CRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKAFRGRQIQMLVATDVAARGIDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 ++ V++ +L E HRSGRTGRAG+ G S+ ++ ++ R+ + R Sbjct: 309 DNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSEIRKISSIER 359 >gi|218701933|ref|YP_002409562.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI39] gi|218371919|emb|CAR19775.1| ATP-dependent RNA helicase [Escherichia coli IAI39] Length = 629 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|312947721|gb|ADR28548.1| ATP-dependent RNA helicase DeaD [Escherichia coli O83:H1 str. NRG 857C] Length = 629 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|237798217|ref|ZP_04586678.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021069|gb|EGI01126.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 459 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 19 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 76 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTLLFSATYPVGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V ++ + + + FC Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVIGHFRPTSCVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++V++ EL+ + E +HR GRTGRAG KG++V ++ + +RA + + W+ Sbjct: 310 ALDMVLNVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368 >gi|207725326|ref|YP_002255722.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] Length = 633 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/401 (36%), Positives = 211/401 (52%), Gaps = 37/401 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67 I AL E Y T VQ + L +D+LV++QTGSGKT AF L + + + Sbjct: 73 IVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQR 132 Query: 68 -------------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106 R PA A P L + PTRELA+QV GR L +V A Sbjct: 133 PRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 186 Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166 +GG+ ++ L I++ TPGRL DHI +++S L +V DEAD MLD+GF Sbjct: 187 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 246 Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226 DDIE I+ ++P+ R+MLMFSAT+ I LA+ ++ R+ IA+ S+I+ R Sbjct: 247 DDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFT 306 Query: 227 -ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285 +S + + ++LR K AIVF +T+ + L E F AL G++ Q R+ Sbjct: 307 DDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNR 366 Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L +R G R+ +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ Sbjct: 367 TLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 426 Query: 346 FVIPQN---MQRRAERLF-REANVSVV--WEPAPSVEAIRE 380 ++ RR ER R N +VV EP S + RE Sbjct: 427 NLVNHGDTFQWRRIERFVDRRINATVVEGLEPKRSPKPRRE 467 >gi|124026185|ref|YP_001015301.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A] gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A] Length = 589 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 161/534 (30%), Positives = 266/534 (49%), Gaps = 40/534 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N + + + +S++GY + T +Q+A + L +D++ AQTG+GKT AF L + L Sbjct: 42 NFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILERLKKN 101 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 P L +APTRELA+QV A V GG + L+ G Sbjct: 102 ------VGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRRG 155 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +VVGTPGR+ DH+R K LN SHL +VLDEADEML +GF DD+E+IL+ P++R++++ Sbjct: 156 VDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLVL 215 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I L+K Y + I + + I R + V + NA+ +L Sbjct: 216 FSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVYKVNALQRVLEAVSE 275 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F T+A + L + + V L+G++ Q +R ++ +R G + +ATDVA Sbjct: 276 EGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVATDVA 335 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARG+D+ + LVI+ ++ + E +HR GRTGRAGR G ++ FV P+ ER F Sbjct: 336 ARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPR------ERSFLSN 389 Query: 364 NVSVVWEP-----APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKH----- 411 V +P P + I +++ + S + D + ++L L K+ Sbjct: 390 LERAVGQPIEKMDIPDNDLINNNRIKKLQAKLIKAASTERDNPEEANILEELIKNVEKEL 449 Query: 412 --DPE-------KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462 DP+ +A GF + G + I + + R+ RD+++ + G DN Sbjct: 450 DIDPKDLTLAALNLAVGFNALLENG--NEDWIRQSAQRNTRNDRRDNNKFKQRRRGDFDN 507 Query: 463 FKGSSW---FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + F + VG + + + L+ + +G+ +SIG IR+ + + V++ Sbjct: 508 NRLEDEMDRFRVEVGHRDRVKPGNLVGAIANEAGLKGRSIGRIRIFENYSLVDL 561 >gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002] gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002] gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002] Length = 487 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 139/412 (33%), Positives = 222/412 (53%), Gaps = 17/412 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L +DV+ +QTG+GKT A+ L + E L Sbjct: 22 GFEKPTEIQSKAIPAILEGRDVVGLSQTGTGKTAAYSLPFLEKIDLEQKTVQ------GL 75 Query: 79 AIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELAVQV + L E+ + V+ VC GG S+ R+ R LQ G HIVVGTPGR+ D Sbjct: 76 ILTPTRELAVQVTQSLKEFAVDRRLWVLTVC-GGQSMERQIRSLQKGVHIVVGTPGRVID 134 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 + L+ L+ VLDEADEML +GF DD++ IL SPK R+ + FSAT+ PAI L Sbjct: 135 LLERGKLSFEELRWAVLDEADEMLSMGFIDDVKKILRQSPKTRQTVCFSATMPPAIRDLV 194 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRAS 256 +N+ D + + I I ++ + A++ IL ++AI+F T+ + Sbjct: 195 ENFLNDPINITIKQPQVTPDRIAQEVYMIPRGWSKTKALLPILEMANPESAIIFVRTKRT 254 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 S T L E G+L+Q +R ++ +DG+ ++ +ATD+AARG+D+ +L V Sbjct: 255 ASELTNELVEAGQSADEYHGDLNQNQREKLVRRFKDGKIKMIVATDIAARGLDVENLSHV 314 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376 I+ +L N E+ +HR GRTGRAG+ G ++ ++ + +R ++ R S+ PS Sbjct: 315 INFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIERRVKQSLKVSTIPSRT 374 Query: 377 AIRERDAQRILQ-DPLFLDSIQGDEK----KMVDVLLAKHDPEKIAAGFLRI 423 + +AQR+ + + +++ G+ +V L ++DP+ IAA L++ Sbjct: 375 EV---EAQRVTRLETQVREALAGERMASFLPIVKRLGDEYDPQAIAAAVLQM 423 >gi|301025571|ref|ZP_07189094.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1] gi|300395891|gb|EFJ79429.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1] Length = 457 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGLQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|220913250|ref|YP_002488559.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6] gi|219860128|gb|ACL40470.1| DEAD/DEAH box helicase domain protein [Arthrobacter chlorophenolicus A6] Length = 561 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/353 (36%), Positives = 194/353 (54%), Gaps = 13/353 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ Q I ++LS+ G + +Q L L D++ A+TG+GKT+ FG+ ++ Sbjct: 43 NVRQDIVDSLSDAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQRVVGR 102 Query: 66 ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +D + + AP AL I PTRELAVQV +L+ K +A GG + + L Sbjct: 103 DDAGYDKLAVPGAPQALVIVPTRELAVQVASDLQAASTKRNARIATIYGGRAYEPQVEAL 162 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 +NG +VVGTPGRL D R K L++ +++ VVLDEADEMLDLGF D+E I+ +P R+ Sbjct: 163 KNGVEVVVGTPGRLIDLYRQKHLSLKNVRIVVLDEADEMLDLGFLPDVETIIAGTPAVRQ 222 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAI 235 L+FSAT+ + +A+ Y + A + R + YRA + D+ + Sbjct: 223 TLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSM---DKTEVV 279 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 IL+ G I+F T+ + ++ + L + F A+ G+L Q R AL+ R+ + Sbjct: 280 ARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNKV 339 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V +ATDVAARGID+ D+ VI+ + + + LHR GRTGRAG KG +V + Sbjct: 340 DVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFV 392 >gi|86157651|ref|YP_464436.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774162|gb|ABC80999.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C] Length = 628 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 189/338 (55%), Gaps = 11/338 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T VQ A P KDV+V ++TG+GKT AF + + + + R P+ Sbjct: 34 AVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFTIPILERI--PDGRRKPS- 90 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA+QV E+ L + V GG S+ + L+ GA IVVGTPG Sbjct: 91 ---ALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAGAEIVVGTPG 147 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHIR K L + + LDEADEML++GF +++ ILD P + L+FSAT+ I Sbjct: 148 RIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLLFSATVPADI 207 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVF 250 + +Y D + ++ + + +I+ V+ D N+L G + AI+F Sbjct: 208 EQIIHDYLTDPETILLSGDEYKVENIN--NVMYPTVDAYPKPRNLLYMIGMEEPEAAIIF 265 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR+ S T VL + + L+G+L Q+ER + ++ G R +ATD+AARGID+ Sbjct: 266 CNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATDIAARGIDI 325 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DL VI+ L +P LHR GRTGR G+KG S+ ++ Sbjct: 326 SDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLV 363 >gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 492 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/473 (31%), Positives = 243/473 (51%), Gaps = 35/473 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +Q + L DV+ AQTG+GKT AFGL + L + + Sbjct: 14 KAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131 A+ I+PTRELA+Q EL L + V V GG + R+ + L Q+ HI+VGT Sbjct: 72 ----AVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHTPHILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI+ +N++H+K ++LDEADEMLD+GF DDIE I+ + P +R+ L+FSAT+ Sbjct: 128 PGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + + V I ++ +D V ++ + + ++ + IVF Sbjct: 188 EILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V ++ L + + G+L+QQ R N L+ ++G + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE------ 362 + V + ++ +PE+ +HR GRTGRAG G SV FV P M R E+L ++ Sbjct: 308 GVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLK 367 Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419 + + + + + +++ I++ L D+ + LL ++D ++ A Sbjct: 368 PPTQDEAFIGQVSSALDDIKD----------LIADTDTERYEAQAQALLEQYDAVEVVAA 417 Query: 420 FLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 FL + P +ITP + R + R + ++ G DNFK S F+ Sbjct: 418 FLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGN-YRRGN---DNFKRSKRFN 466 >gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551] gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551] gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] Length = 631 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/401 (36%), Positives = 211/401 (52%), Gaps = 37/401 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67 I AL E Y T VQ + L +D+LV++QTGSGKT AF L + + + Sbjct: 73 IVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQR 132 Query: 68 -------------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106 R PA A P L + PTRELA+QV GR L +V A Sbjct: 133 PRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 186 Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166 +GG+ ++ L I++ TPGRL DHI +++S L +V DEAD MLD+GF Sbjct: 187 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 246 Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226 DDIE I+ ++P+ R+MLMFSAT+ I LA+ ++ R+ IA+ S+I+ R Sbjct: 247 DDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFT 306 Query: 227 -ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285 +S + + ++LR K AIVF +T+ + L E F AL G++ Q R+ Sbjct: 307 DDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNR 366 Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L +R G R+ +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ Sbjct: 367 TLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 426 Query: 346 FVIPQN---MQRRAERLF-REANVSVV--WEPAPSVEAIRE 380 ++ RR ER R N +VV EP S + RE Sbjct: 427 NLVNHGDTFQWRRIERFVDRRINATVVEGLEPKRSPKPRRE 467 >gi|257456960|ref|ZP_05622141.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580] gi|257445669|gb|EEV20731.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580] Length = 605 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 194/339 (57%), Gaps = 6/339 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + L E GY+ T VQE + + + D+ V +QTG+GKT A+ + L +LA+ Sbjct: 18 NLDSHLLQGLEEAGYIECTPVQEQVFSAGMDGSDLYVQSQTGTGKTAAYLVTLMQRMLAQ 77 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + P AL + PTRELAVQV E L TG+ A GGV ++ L+NG Sbjct: 78 G---TESRRP-ALILVPTRELAVQVEEEAHKLGKYTGLRAASFYGGVGYQQQEEALKNGV 133 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 +++GTPGR+ D + K + + H+ +V+DEAD M D+GF D+ +L S ++R+ + Sbjct: 134 DLIIGTPGRVIDLEKSKTMKLKHVGFLVIDEADRMFDMGFYPDLRSLLSVLSKAEERQTM 193 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT++ + LA Y DA + I ++N +I+ + VA + + ++ ILR Sbjct: 194 LFSATLNTWVKNLAWEYTIDAKEITIDADNVTVDEINQKLFHVAADQKMSLLLGILRNEK 253 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +N I+FC+T+ + K L + + L G+L Q +R + + + G+ +ATDV Sbjct: 254 PENTIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLTCLVATDV 313 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 AARGID+ DL +VI+ +L + EN +HR GRT RAG+ G Sbjct: 314 AARGIDINDLAMVINYDLPNEAENYVHRIGRTARAGKTG 352 >gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] Length = 447 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 186/340 (54%), Gaps = 16/340 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY T VQE + + D+LVS+ TGSGKT AF L L+ R +P S Sbjct: 15 AVEQSGYTTPTPVQEQAIPAAIAGGDLLVSSHTGSGKTAAFTLPSLHRLVGR--RPAPNS 72 Query: 74 APLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 P L + PTRELA QV GR L WL A +GG + + L Sbjct: 73 GPRVLVLTPTRELAQQVEEAVKTYGRALRWLN------TACLVGGAPFFAQVKQLSRPVD 126 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VV TPGRL DH+ + L +S ++ +VLDEAD MLD+GF +DIE I+ + P R+ L+FS Sbjct: 127 VVVATPGRLLDHLNRRKLKLSDVETLVLDEADRMLDMGFAEDIEAIVGAIPASRQTLLFS 186 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245 AT+ + LA ++ R+ IAS + +I+ R + + + + +L G + Sbjct: 187 ATLDGVVGALANKLTRNPQRIEIASTEAKRGNIEQRLMFADDMGHKSRLLEALLGTDGLQ 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A+VF +T+ S + L E F AL G++ Q R+ LQ +R GR V +ATDVAA Sbjct: 247 QAVVFTATKKSADELSLSLQEKGFSAAALHGDMHQTVRNRTLQRLRQGRIGVLVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ + VI+ + E+ +HR GRTGRAGR G+++ Sbjct: 307 RGIDVAGISHVINFDPPRQVEDYVHRIGRTGRAGRDGIAI 346 >gi|330014982|ref|ZP_08308018.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3] gi|328532472|gb|EGF59268.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3] Length = 457 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 205/366 (56%), Gaps = 10/366 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+++TSVQ A L L KDV V A+TGSGKT AFGL L + + RF S Sbjct: 18 LNELGYLSMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV EL L + + + GG +R LQ+ HI+V TPG Sbjct: 75 ---LVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ +++ L+ +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++ Q++ + I + + + I+ + V+ + + +L H + +VFC+T Sbjct: 192 AAISGRVQRNPQTIEIDTVDALPA-IEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L ++L G+L Q++R L +G RV +ATDVAARG+D+ L Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372 LV++ EL+ +PE +HR GRT RAG +G+++ F P+ Q RA L +S+ W PA Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369 Query: 373 PSVEAI 378 P+ I Sbjct: 370 PTGNTI 375 >gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gi|300075506|gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 510 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 144/397 (36%), Positives = 215/397 (54%), Gaps = 32/397 (8%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA---------- 57 P +I +AL+E GY + T VQE + + +D+LVS+QTGSGKT AF L Sbjct: 10 PSII-KALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSLHQLADLPP 68 Query: 58 ------------LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105 AS E R+ PA P L + PTRELA+QV + A V Sbjct: 69 APQAARTPNQERQASRARGERPRYQPAQ-PKMLVLTPTRELALQVTTATDKYGAYMRRVR 127 Query: 106 AVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164 V I GG+ ++ + L I+V TPGRL DH+ ++ S L+ +VLDEAD MLD+G Sbjct: 128 VVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADRMLDMG 187 Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224 F DDIE I+ ++P R+ ++FSAT+ + +AK + + + IAS + +H +I R Sbjct: 188 FIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHENIMQRVH 247 Query: 225 LV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283 V LS ++ + ++LR A++F +T+ L F AL G++ Q R Sbjct: 248 FVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHGDMHQGAR 307 Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343 + L +R G+ R+ +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR G+ Sbjct: 308 NRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTGRAGRNGV 367 Query: 344 SVFVI--PQNMQ-RRAERLFREA-NVSVV--WEPAPS 374 ++ ++ + MQ +R ER ++ V VV +EP S Sbjct: 368 AISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKS 404 >gi|291514657|emb|CBK63867.1| Superfamily II DNA and RNA helicases [Alistipes shahii WAL 8301] Length = 690 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 154/505 (30%), Positives = 249/505 (49%), Gaps = 32/505 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A+ +G+ TS+Q + P L E D++ +QTG+GKT AFGL + + P Sbjct: 39 AVQAKGFETPTSIQRLTI-PRLLSGENDIIAQSQTGTGKTAAFGLPILQQI-------EP 90 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + + ++ + PTRELAVQ EL + + + GG ++ + R L G IVVG Sbjct: 91 SKEGVQSIILVPTRELAVQAAEELLSYNRERRLSITAIYGGAAMSEQLRRLSRGVDIVVG 150 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHIR L + ++ +VLDEADEML++GF +D+E I+ + + RR+L+FSAT+ Sbjct: 151 TPGRVLDHIRRGTLKLDKVRFLVLDEADEMLNMGFVEDVEEIMGHTGEDRRVLLFSATMP 210 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L++ Y ++ + + S++ + V +D+ +A+ I+ IVF Sbjct: 211 ERIIRLSEAYMRNTEVLRVESQHLTADLTNQIYFEVREADKFDAMTRIIDIEPDFYGIVF 270 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V L + L G++SQ +R L+ RD + +ATDVAARGID+ Sbjct: 271 CRTKIGVDEVATRLVAQGYSAEGLHGDVSQAQREKILRKFRDKAVNILVATDVAARGIDV 330 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 +L VI+ L + E+ +HR GRTGRAG +G ++ I RR + R+ + E Sbjct: 331 SNLSHVINYSLPQDSESYVHRIGRTGRAGNQGTAITFISGAELRRFNWMMRDIKADIKRE 390 Query: 371 PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428 PS + I +I D + + GD + LL + P+ LR L Sbjct: 391 TLPSPQDIVAMKRAKIKDDLQEIVANESYGDYADIAAELLESYAPDVALGALLR-----L 445 Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488 E+ + + R+F V + KG + L++G + AR ++ ML Sbjct: 446 AFRSELDQSNY--------PEIRSFSV------DRKGKARLFLALGGRDGYTARRIVEML 491 Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513 R G+ ++I +RV + + V V Sbjct: 492 KRKCGLRDKNIDDVRVFENYSLVSV 516 >gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM 43183] Length = 565 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 190/340 (55%), Gaps = 8/340 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL G V+ +QE L LR D++ A+TG+GKT+AFG+ L + E+ Sbjct: 37 IADALESEGIVDAFPIQEMALPIGLRGYDIIGQARTGTGKTLAFGIPLLQRI--EHG--- 91 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP L +APTRELA QV +L K G V GG + + + L++G +VVG Sbjct: 92 -GKAPRGLVLAPTRELASQVTDDLLVAGGKLGTRVVAVYGGRAYEPQIQALRDGVDVVVG 150 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D R L++S ++ +VLDEAD MLDLGF DIE I++ P +R+ ++FSAT+ Sbjct: 151 TPGRLLDLARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERIIELVPAERQTMLFSATMP 210 Query: 191 PAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 I L++ Y + VR + +E+ + D+ + +L+ +G + Sbjct: 211 GEIVALSRRYLNRPTNVRAEVHTESEATPQVTQHVFQTHPMDKPEVLARLLQANGRGLTM 270 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ + R L F A+ G+L Q +R AL+ R G+ V +ATDVAARG+ Sbjct: 271 VFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRERALRAFRSGKVDVLVATDVAARGL 330 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ D+ VI+ E + E +HR GRTGRAGR+G +V ++ Sbjct: 331 DVEDVTHVINYECPDSAETHVHRIGRTGRAGREGTAVTLV 370 >gi|194446047|ref|YP_002042538.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404710|gb|ACF64932.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 629 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|78776342|ref|YP_392657.1| ATP-dependent RNA helicase DbpA [Sulfurimonas denitrificans DSM 1251] gi|78496882|gb|ABB43422.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM 1251] Length = 457 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 126/341 (36%), Positives = 197/341 (57%), Gaps = 10/341 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + L+E GY ++ +QE L L KDV+ A+TGSGKT AFG+ L L + Sbjct: 11 NLTKEMLHNLNEIGYTKMSDIQEQSLPFILDGKDVIAQAKTGSGKTAAFGIGLLHKLQVK 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 R AL + PTREL+ QV REL L ++ ++ +C GGV+ + L++ Sbjct: 71 KFRVQ------ALILCPTRELSDQVARELRVLARFSHNIKILTLC-GGVAFGPQLGSLRH 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHI+VGTPGR+ H++ L++ + +VLDEAD MLD+GF ++I +L+ PK R+ L Sbjct: 124 GAHIIVGTPGRILKHLKKDTLSLEDVDTLVLDEADRMLDMGFSEEINEVLEFVPKNRQTL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT + I ++K+ Q A+ V S + I+ R V +D+ +++IL Sbjct: 184 LFSATYTDEILDISKSIQNGAIHVKTTSTEIANK-IEERFYEVNNADKIKTVIDILSNFR 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +N I+F +T+ V K L E +A+ G+L Q +R++ L + V +ATDV Sbjct: 243 PQNVIIFANTKVEVDEIAKRLQESKVDALAIHGDLEQYDRNDVLVQFANKSCPVLVATDV 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 AARG+D+ +L +VI+ +L + E HR GRT RAG +G++ Sbjct: 303 AARGLDIKELSMVINYDLPHSLETYTHRIGRTARAGAEGLA 343 >gi|260596208|ref|YP_003208779.1| ATP-dependent RNA helicase DeaD [Cronobacter turicensis z3032] gi|260215385|emb|CBA27415.1| Cold-shock DEAD box protein A [Cronobacter turicensis z3032] Length = 638 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 143/420 (34%), Positives = 220/420 (52%), Gaps = 15/420 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + +D Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNI---DDTLR 73 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 74 ---APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+LK +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLESEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI 423 P+ E + +R ++ ++ + LLAK P E +AA L++ Sbjct: 371 VELPNAELLGKRRLEKFAAK--VQQQLESSDLDQYRALLAKLQPEGELDVETLAAALLKM 428 >gi|39546364|ref|NP_462193.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415212|ref|YP_152287.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161616286|ref|YP_001590251.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|162139541|ref|YP_218208.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167552072|ref|ZP_02345825.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990155|ref|ZP_02571255.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231889|ref|ZP_02656947.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237981|ref|ZP_02663039.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243114|ref|ZP_02668046.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262709|ref|ZP_02684682.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168819651|ref|ZP_02831651.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194447369|ref|YP_002047310.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470855|ref|ZP_03076839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736232|ref|YP_002116230.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249912|ref|YP_002148207.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265213|ref|ZP_03165287.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364142|ref|YP_002143779.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204928320|ref|ZP_03219520.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238910075|ref|ZP_04653912.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56129469|gb|AAV78975.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161365650|gb|ABX69418.1| hypothetical protein SPAB_04091 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405673|gb|ACF65892.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457219|gb|EDX46058.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711734|gb|ACF90955.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197095619|emb|CAR61187.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213615|gb|ACH51012.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243468|gb|EDY26088.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289140|gb|EDY28509.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322642|gb|EDZ07839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323189|gb|EDZ11028.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331110|gb|EDZ17874.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333912|gb|EDZ20676.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337772|gb|EDZ24536.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343559|gb|EDZ30323.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348425|gb|EDZ35056.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267995476|gb|ACY90361.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312914306|dbj|BAJ38280.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087727|emb|CBY97491.1| Cold-shock DEAD box protein A homolog; ATP-dependent RNA helicase deaD homolog [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225964|gb|EFX51018.1| Cold-shock DEAD-box protein A [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615285|gb|EFY12206.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618356|gb|EFY15247.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622839|gb|EFY19683.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626839|gb|EFY23636.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631408|gb|EFY28168.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635325|gb|EFY32039.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643460|gb|EFY40023.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647104|gb|EFY43605.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648907|gb|EFY45352.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655099|gb|EFY51410.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657702|gb|EFY53970.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664198|gb|EFY60396.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667481|gb|EFY63643.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674729|gb|EFY70821.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675638|gb|EFY71711.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682274|gb|EFY78297.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684877|gb|EFY80875.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716278|gb|EFZ07849.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323191728|gb|EFZ76980.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199035|gb|EFZ84132.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204265|gb|EFZ89274.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207612|gb|EFZ92559.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211335|gb|EFZ96179.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214723|gb|EFZ99472.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323224056|gb|EGA08349.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230295|gb|EGA14414.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233271|gb|EGA17365.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239308|gb|EGA23358.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242441|gb|EGA26467.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246951|gb|EGA30917.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254116|gb|EGA37936.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255233|gb|EGA39010.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262696|gb|EGA46252.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264006|gb|EGA47514.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269392|gb|EGA52847.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 629 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|110680325|ref|YP_683332.1| putative ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh 114] gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh 114] Length = 433 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 199/355 (56%), Gaps = 4/355 (1%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE N+P + L G + T +Q+ + + +DV+ AQTG+GKT AFG+ L Sbjct: 1 MSDFEMMNLPPELVARLGRMGLKDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + +L + R +P S L +APTRELA Q+ L T V VA+ +GG S++ + Sbjct: 61 VAQMLELDGRPAPKSV-RGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQI 119 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ G ++V TPGRL D + + + + +VLDEAD+MLD+GF D+ I PK Sbjct: 120 KRLERGVDLLVATPGRLLDLMDRRAVRLDEAVFLVLDEADQMLDMGFIHDLRKIASVIPK 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT+ + LA +Y + +RV ++ + + +A S++ ++ + Sbjct: 180 ERQTMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAKSEKPGLLIEM 239 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L H + A+VF T+ + K L + + ++ G SQ +R A+ + G +V Sbjct: 240 LDKHRDERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVL 299 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARG+D+PD++ V + +L + P+N +HR GRT RAG+ G ++ F P M Sbjct: 300 VATDVAARGLDIPDVKHVYNYDLPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 354 >gi|331662753|ref|ZP_08363676.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143] gi|331061175|gb|EGI33139.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143] Length = 457 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|313205812|ref|YP_004044989.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM 15868] gi|312445128|gb|ADQ81483.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM 15868] gi|315022792|gb|EFT35816.1| Cold-shock DEAD-box protein A [Riemerella anatipestifer RA-YM] Length = 554 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 126/383 (32%), Positives = 212/383 (55%), Gaps = 12/383 (3%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57 M +F N+ I +A+ E G+ T +Q+ + L + +D++ AQTG+GKT AF L Sbjct: 1 MNLFSESNLSPEILKAVGEMGFETPTEIQKQSIPFILSDVRDLIALAQTGTGKTAAFSLP 60 Query: 58 LASTLLAENDRFSPASAPLAL-AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVH 115 + D S + L + PTREL +Q+ ++++ + +V + GG S+ Sbjct: 61 IL-------DMIDDTSRKIQLLVLCPTRELCLQIAKDIKNYSKYQPNIKSVAVYGGSSIT 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L++ I+VGTPGR+ D I K L+ S + +VLDEADEML +GF+DD+E IL Sbjct: 114 DQIRSLRDKPQIIVGTPGRVIDLINRKALDFSSIHWLVLDEADEMLSMGFKDDLETILSE 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 +P+ ++ L+FSAT++ + ++K+Y + R+++ S N +I + +V + A+ Sbjct: 174 TPETKQTLLFSATMNKEVERISKSYLTNPHRISVGSINAVKKNISHEYYVVNYRQKKEAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 ++ + + +I+FC TR L ++ + AL G+LSQ +R + R Sbjct: 234 KRLIDANPNQYSIIFCRTRMEAKEVADYLMQNGYAADALHGDLSQAQRDTVMLKFRLKNI 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + +ATDVAARG+D+ L VIH L +PE +HRSGRTGRAG+ G+S+ +I R+ Sbjct: 294 DILVATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEETRK 353 Query: 356 AERLFREANVSVVWEPAPSVEAI 378 + + + + + +P P E I Sbjct: 354 LKHIKVQTQIELKEKPIPKGEDI 376 >gi|123966425|ref|YP_001011506.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9515] gi|123200791|gb|ABM72399.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9515] Length = 595 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 154/533 (28%), Positives = 261/533 (48%), Gaps = 38/533 (7%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 ++I +L +GY T +Q+A + + +D+L AQTG+GKT AF L + L EN++ Sbjct: 60 KLILNSLENKGYKIPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPIIEKL--ENNK 117 Query: 69 FSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 S A L + PTRELA QV + + T + GG + L+ + Sbjct: 118 ESNAKV---LVMTPTRELATQVADSFKSYSVESTNLRTLAIYGGTDFRNQISSLKRKTDV 174 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DHIR I+++ +VLDEADEML +GF +DIE+I+D P+ ++M++FSA Sbjct: 175 VVGTPGRIMDHIRQGTFKINNINCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMVLFSA 234 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I +AK Y D + I S ++ I R + V + A+ IL + Sbjct: 235 TMPNEIRNIAKKYLNDPAEILIKSVKKETQLITQRYINVQRHHKLEALKRILEITN-EGV 293 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + + L V L+G++ Q +R N + ++ G + +ATDVAARG Sbjct: 294 IIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARG 353 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ ++LVI+ + + E HR GRTGRAGR G ++ + Q + L + Sbjct: 354 LDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRNKI 413 Query: 368 VWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKK-----MVDVLLAKHDPEK----I 416 P+ + I E+ +++ + + L +EKK ++D+L K+ + + Sbjct: 414 EEIEIPNNKLINEKRMGKLISNLNEISLAQENNEEKKALMIDILDILREKYSMNESNIAM 473 Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG-------------SRDNF 463 AA L I E+ + + + DR +R+ + G G D+F Sbjct: 474 AAINLAIGNKSFFLNEDESWIYKQNNSDR----NRSNRNGSGNNRMRNINRRNNYQNDSF 529 Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + + + G + ++ +C S+ IN +SIG I++ + + V++ D Sbjct: 530 E---TYKFNFGKMDRVRVSNIISSICNSTNINGRSIGKIQIFNEYSLVDLPKD 579 >gi|88854845|ref|ZP_01129511.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] gi|88816006|gb|EAR25862.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] Length = 757 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 197/358 (55%), Gaps = 6/358 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---D 67 I L+ G + +Q A + L KDVL +TGSGKT+AFG L L+ N D Sbjct: 383 ISRQLASMGAESPFPIQAATIPDVLAGKDVLGRGKTGSGKTIAFGAPLVERLMENNGGKD 442 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R P AL +APTRELA Q+ R ++ + G+ +GGV +++ L G + Sbjct: 443 RQM-GRKPRALILAPTRELAQQIDRTIQPIARSVGLFTTTIVGGVPQYKQVAALTRGVDV 501 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGR+ D I L++S +K VLDEAD M DLGF + ++ IL + + + L+FSA Sbjct: 502 IIATPGRVEDLIEQGRLDLSQVKVTVLDEADHMCDLGFLEPVQRILRETSEGGQKLLFSA 561 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ + TL K + D +A E++ S ID++ +L+ D+ AI+ L G Sbjct: 562 TLDKGVATLVKEFLVDPAVHEVAGEDQASSTIDHKVLLIEQRDK-RAIIKQL-SAGTGKT 619 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF TRA + L+ +L G+L+Q R+ LQM+ G+ V +ATDVAARG Sbjct: 620 LVFTRTRAFAEEMAEFLSMGGTPATSLHGDLNQSRRTRNLQMLTSGKVNVLVATDVAARG 679 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 I + D+ LVI A+ + LHR+GRTGRAG+ G V +IP+N +R+ + L A + Sbjct: 680 IHVDDISLVIQADAPEEYKTYLHRAGRTGRAGKAGTVVTLIPRNRRRKMDELLGRAEI 737 >gi|297521217|ref|ZP_06939603.1| ATP-dependent RNA helicase DeaD [Escherichia coli OP50] Length = 569 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|284921218|emb|CBG34284.1| ATP-independent RNA helicase [Escherichia coli 042] Length = 457 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|62129424|gb|AAX67127.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 651 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 39 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 93 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 94 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 273 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 393 VELPNAELLGKR 404 >gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 585 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 195/340 (57%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + GY +++Q A + L +DVL AQTG+GKT AF L + S L Sbjct: 30 KALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSNLDVAQ------ 83 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+QV E + GV V GG + L+ G H+VVGT Sbjct: 84 KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRRGVHVVVGT 143 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S LK +VLDEADEML +GF +D+E IL +PK +++ +FSAT+ Sbjct: 144 PGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIALFSATMPA 203 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Y +D + + ++ ++ R ++V+ + +A+ IL + IVF Sbjct: 204 QIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDALTRILETENFEGMIVFV 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + A+SG+++Q +R ++ +++G+ + +ATDVAARG+D+ Sbjct: 264 RTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDVAARGLDVD 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P+ Sbjct: 324 RISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPR 363 >gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2] gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp. SB155-2] Length = 471 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/405 (31%), Positives = 223/405 (55%), Gaps = 11/405 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQ++ +A+ + G+ + +Q+ + L KD++ A TG+GKT AF L L + L + + Sbjct: 10 PQIM-KAIEQAGFKEPSPIQKEAIPVVLAGKDMVGQAHTGTGKTAAFALPLLNMLELDGE 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AL I PTRELA QV E+ L G+ A GG S R+ + N A + Sbjct: 69 -------VEALVIVPTRELATQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHIANAA-V 120 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGRL D ++ + ++ K VVLDEADEMLD+GF DDI+ I + P R+ L+FSA Sbjct: 121 VVATPGRLLDLLKSGKIELNP-KFVVLDEADEMLDMGFLDDIKAIFNYLPTNRQTLLFSA 179 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ AI LA+ ++I + + +I +V +RD A++ +L Y + Sbjct: 180 TMPQAIKELAQQILHSPEFISITKKEVTNVNIKQFYYVVDEHERDEALIRLLDYKNPTKS 239 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC + V R + L + L G++ Q++R ++ + G + IATDVAARG Sbjct: 240 IIFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEILIATDVAARG 299 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ D+ V + + +PE+ +HR GRTGRAG++G+++ ++ + ++ R+ +E S+ Sbjct: 300 LDISDVSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEFKQLLRIQKEVGSSL 359 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412 + + P+ ++ + Q+ + D + + + ++V++L ++ D Sbjct: 360 INKEIPTSAEVK-NEKQKSMLDMILSQEVSKEAIELVELLESQID 403 >gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 481 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/418 (34%), Positives = 215/418 (51%), Gaps = 15/418 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ G+ T +Q + L +DV+ AQTG+GKT AFGL + L D Sbjct: 12 ILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPILQKL----DLDK 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A A+ I PTRELA+Q EL L V V GG + R+ R L+ I+VG Sbjct: 68 QEQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKKAPEILVG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K + + +K VVLDEADEMLD+GF DIE IL + + + L+FSAT+ Sbjct: 128 TPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMP 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L + + D V I ++ ID V V +++ + + ++ A+VF Sbjct: 188 KPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVF 247 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V T+ L + + G+L+Q R L+ ++G + +ATDVAARG+D+ Sbjct: 248 GRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI 307 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSV 367 + V + ++ +P++ +HR GRTGRAG+ GMSV FV P + R E L ++ + Sbjct: 308 SGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTIEDLIKKKMSPL 367 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLR 422 P +A + Q +L+ D + GD K D LL + E IAA L+ Sbjct: 368 --RPPTDAQAFAGQMKQAVLK---VDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLK 420 >gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565] gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii B565] Length = 416 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/337 (37%), Positives = 188/337 (55%), Gaps = 5/337 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + + L+E GY T +Q + L +D++ AQTG+GKT AF L L LLA+ S Sbjct: 15 LQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQLLAQPQMES 74 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P+ AL + PTRELAVQV + TG+ GGVS+ + L+NG +++ Sbjct: 75 --QRPIRALVLVPTRELAVQVAESVARYGQGTGLTSTQVYGGVSIAAQVDALKNGVDLLI 132 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+R L++ L+ +V DEAD MLD+GF D+I +L P R+ L+FSAT Sbjct: 133 ATPGRLLDHLRQGALSLDSLRHLVFDEADRMLDMGFMDEITALLKQLPVDRQTLLFSATC 192 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248 + L+K +D + +A N ++++ R V SDR A+V ++L+ G A+ Sbjct: 193 DDNLFALSKVLLRDPELIEVAPRNTTAAEVEQRVYTVD-SDRKLALVEHMLKVKGWAPAL 251 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F TR + + L + +A G+LSQ R L R G + +ATDVAARG+ Sbjct: 252 IFSRTRQGADKLAQQLGKSGINALAFHGDLSQSAREKVLLEFRAGTLQALVATDVAARGL 311 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ DL VI+ E E+ +HR GRTGRAG KG+++ Sbjct: 312 DITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAI 348 >gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8] gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8] Length = 493 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 197/344 (57%), Gaps = 2/344 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71 ++++E GY T +Q + + +DV+ +AQTG+GKT AF L + L+ N SP Sbjct: 30 QSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASP 89 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P+ AL + PTRELA QV ++ +T + AV GGV + ++ L+ G ++V Sbjct: 90 ARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEVLVA 149 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ K +N+S + +VLDEAD MLD+GF D+E I+ P +R+ L+FSAT S Sbjct: 150 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFS 209 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L ++Y V + +A+ N + I A + + A+V++++ G IVF Sbjct: 210 NEIRKLGRSYLNHPVEIEVAARNATANTITQIAYKMPSDAKRAAVVHLVKSRGLNQVIVF 269 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +T+ +R + L + ++ G+ +Q +R AL+ + G V +ATDVAARG+D+ Sbjct: 270 SNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVATDVAARGLDV 329 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ +L N E+ +HR GRTGRAG G ++ + + +R Sbjct: 330 AGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEER 373 >gi|308175626|ref|YP_003922331.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens DSM 7] gi|307608490|emb|CBI44861.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens DSM 7] Length = 475 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 189/340 (55%), Gaps = 7/340 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL Y T VQ ++ L++KD++V +QTGSGKT AFG+ + E ++ Sbjct: 13 IARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPICELADWEENK-- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA Q+ ++ + + G S +++ +L+ +H+V G Sbjct: 71 ----PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQKSHVVCG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI L + L VV+DEADEML++GF + +E I+ PK R ++FSAT+ Sbjct: 127 TPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L++ Y KD + + +E DI++ A D+ + + ++L + I+F Sbjct: 187 DDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRAAEEDKSSLLRDVLITENPDSCIIF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V + T L + + G + Q++R + + + G R IATDVAARGID+ Sbjct: 247 CRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGIDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 ++ LVI+ ++ E+ +HR+GRTGRAG +G ++ FV P Sbjct: 307 ENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTP 346 >gi|16421839|gb|AAL22152.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261248446|emb|CBG26283.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|332990138|gb|AEF09121.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 646 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 34 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58] gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58] Length = 502 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 194/339 (57%), Gaps = 5/339 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++++ GY T +Q + L +D++ AQTG+GKT AFGL + L+ + DR PA+ Sbjct: 28 SVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEMLMKQADR--PAN 85 Query: 74 -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTREL Q+G L KT + + +GG S+++++ L+ G I+V TP Sbjct: 86 RTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQLEKGTDILVATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I +++S + +VLDEAD+MLDLGF D+ I P KR+ L+FSAT+ A Sbjct: 146 GRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQTLLFSATMPKA 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I+ LA N+ D ++V + + ++ Y + +D+ + + L + +IVF Sbjct: 206 ISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNENPDGRSIVFL 265 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + K L F+V ++ G SQ +R AL+ +DG +V +ATDVAARGID+P Sbjct: 266 RTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVATDVAARGIDIP 325 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 + V + +L P+ +HR GRT RAGR G+++ F P Sbjct: 326 AVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAP 364 >gi|168463497|ref|ZP_02697414.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633290|gb|EDX51704.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 629 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|328544967|ref|YP_004305076.1| ATP-dependent RNA helicase protein [polymorphum gilvum SL003B-26A1] gi|326414709|gb|ADZ71772.1| ATP-dependent RNA helicase protein [Polymorphum gilvum SL003B-26A1] Length = 503 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 192/341 (56%), Gaps = 2/341 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++++ GY T +Q + L D++ AQTG+GKT AFGL LA+ +LA D +P Sbjct: 33 KSIAALGYEAPTPIQTDAIPHILAGHDLMGLAQTGTGKTAAFGLPLANRMLASADTAAPR 92 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL +APTREL Q+ + L + + VAV +GGVS+ + + L G I+V TP Sbjct: 93 TT-RALILAPTRELVTQIAQNLVAFVKGSPLQVAVVMGGVSIGGQIKRLARGTDILVATP 151 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + L + + +VLDEAD+MLDLGF + I PKKR+ L+FSAT+ Sbjct: 152 GRLLDLVDRNALRLDEVGYLVLDEADQMLDLGFIHALRKIAALVPKKRQTLLFSATMPKQ 211 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ Y KD VRV +A R +D VA +D+ + +++ L ++VF Sbjct: 212 IEDLARAYLKDPVRVEVAPAGRTADKVDQCVHFVAQADKTDLLISCLSERAQDLSLVFAR 271 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ +R A++ ++ G R+ +ATDVAARGID+P Sbjct: 272 TKHGADKVVRKLVAAGLKANAIHGNKSQNQRDRAIKELKTGETRILVATDVAARGIDIPG 331 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + +L PE+ +HR GRT RAG G +V F P+ + Sbjct: 332 VSHVYNFDLPDVPESYVHRIGRTARAGADGDAVAFCAPEEI 372 >gi|283832995|ref|ZP_06352736.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220] gi|291071607|gb|EFE09716.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220] Length = 457 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 210/383 (54%), Gaps = 12/383 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P E L+E GY+ +T VQ A L L +DV V A+TGSGKT AFGL L + A Sbjct: 10 LPAAQLENLNELGYLEMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQHIDAAL 69 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 + +L + PTRELA QV EL L + ++ +C GG +R LQ+ Sbjct: 70 FQMQ------SLVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHA 122 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HI+V TPGRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+ Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLL 182 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT AI ++ Q+D + + I + + + I+ + + + + +L + Sbjct: 183 FSATWPEAIAAISGRVQQDPLTIEIDTVDALPA-IEQQFFETSSHGKIPLLQKLLSQYQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VFC+T+ L ++L G+L Q++R L +G ARV +ATDVA Sbjct: 242 ASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARG+D+ LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHIHRIGRTARAGNSGLAISFCAPEEAQ-RANILSEML 360 Query: 364 NVSVVWEPAPSVEAIRERDAQRI 386 + + W PAP +I +A+ + Sbjct: 361 QLKLNWLPAPGNGSILPLEAEMV 383 >gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii] gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii] Length = 384 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/353 (36%), Positives = 202/353 (57%), Gaps = 20/353 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+ RG +L VQ +L P +DV+ A+TGSGKT+AF L + LL + P Sbjct: 27 DALANRGIFSLFPVQAQVLEPIASGRDVVCRAKTGSGKTLAFALPVVENLLEVSGLRRPR 86 Query: 73 S------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + +P + +APTRELA QV RE E + + V GGVS+ + R L+ G Sbjct: 87 TRPRKGRSPRCVVLAPTRELANQVSREFESVCP--ALKVDSFYGGVSISAQMRSLERGVD 144 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRM 182 +VVGTPGR+ D ++ L + ++ +LDEAD MLD+GF D+E IL + P +R+ Sbjct: 145 VVVGTPGRVIDLMQRGSLKLDAVRYAILDEADSMLDMGFEQDMETILGAMPTAAANERQT 204 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNIL 239 L+FSAT+ + ++AK YQ++ + +++ E D +LV + + +A+ +L Sbjct: 205 LLFSATLPKWVKSVAKRYQQNPLTIDLVGEENTGRLADTIRLLVQQVEGAQKMSALQGVL 264 Query: 240 RYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +G AI+F +T+A + E AL G++SQ +R AL + R+G+ Sbjct: 265 SMYGNTAGGGKAIIFVNTKAKADEVNLAVNE-FAPCDALHGDISQAQREKALSLFREGKY 323 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARG+D+P+++LV+H ++ + E LHRSGRTGRAG+ G +V + Sbjct: 324 AALVATDVAARGLDIPNVDLVVHYDVPQDNEAFLHRSGRTGRAGKTGTAVVLF 376 >gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] Length = 406 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/352 (34%), Positives = 201/352 (57%), Gaps = 9/352 (2%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 M F+++ P ++ A+ E GY T +Q + + +DV+ SAQTG+GKT AF L Sbjct: 1 MTTFKDLGLAPAILS-AVEEAGYTEPTPIQAGAIPHIIDGRDVIGSAQTGTGKTAAFALP 59 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L + +AP L + PTRELA QV + E + A+ GGV R+ Sbjct: 60 ALHRL----GKHQKGAAPRCLVLGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQ 115 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R++L+ GA +V+ TPGRL DH++ + ++ ++ ++LDE D MLD+GF DD++ I+ Sbjct: 116 RQELEAGADVVIATPGRLIDHVQQRTADLRNVDLLILDEVDRMLDMGFIDDVKKIIKFCS 175 Query: 178 KK-RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 K+ R+ L+FSAT+S I L KD V V IA + + + V + + +V Sbjct: 176 KQGRQTLLFSATVSEEIKRLIARSLKDPVEVAIAVKITPAETVKHEVYPVGAMQKFDLLV 235 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 ++ + I+FC + R T+ L +H ++V A+ +L+Q+ R+ ALQ +DG + Sbjct: 236 ALIESMEVDSMIIFCRMKIGADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIK 295 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + +ATD+A+RG+D+ ++ VI+ ++ +PE+ +HR GRTGRA R+G + ++ Sbjct: 296 ILVATDIASRGLDIANVTHVINYDVPEHPEDYVHRIGRTGRAQREGDAATIL 347 >gi|224585078|ref|YP_002638877.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469606|gb|ACN47436.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 626 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|238896669|ref|YP_002921414.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae NTUH-K2044] gi|329997852|ref|ZP_08302922.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3] gi|238548996|dbj|BAH65347.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328538887|gb|EGF64951.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3] Length = 659 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 139/374 (37%), Positives = 208/374 (55%), Gaps = 11/374 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + E Sbjct: 33 ILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 87 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 88 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 146 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248 AI + + + K+ V I S DI ++ A R N A+V L AI Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 265 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 266 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 325 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSV 367 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR R + R +++ Sbjct: 326 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTI 384 Query: 368 VWEPAPSVEAIRER 381 P+ E + +R Sbjct: 385 PEVELPNAELLSKR 398 >gi|152972086|ref|YP_001337232.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956935|gb|ABR78965.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 643 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 9/373 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 72 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248 AI + + + K+ V I S DI ++ A R N A+V L AI Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 310 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369 Query: 369 WEPAPSVEAIRER 381 P+ E + +R Sbjct: 370 EVELPNAELLSKR 382 >gi|317494076|ref|ZP_07952492.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917849|gb|EFV39192.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/352 (37%), Positives = 202/352 (57%), Gaps = 11/352 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P E L+E GY ++T VQ A L L +DV A+TGSGKT AFG+ L + + Sbjct: 9 SLPAAQLENLAELGYASMTPVQAAALPAILEGRDVRAQAKTGSGKTAAFGIGLLQQI--D 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 +F+ AL + PTRELA QV +EL L + + ++ +C GG + + L + Sbjct: 67 VTQFTTQ----ALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPISHQLDSLVH 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 HIVVGTPGR+ +H+R K +++ +K +VLDEAD MLD+GF D I+ ++ +P R+ L Sbjct: 122 APHIVVGTPGRIQEHLRKKSVSLDAMKVLVLDEADRMLDMGFADAIDDVISYTPTARQTL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I ++ Q++ V + + DI+ + + ++ + +L Sbjct: 182 LFSATYPQGIERISARVQREPVTIE-TGDVSALPDIEQQFYETSRGEKLLLLQALLSNLQ 240 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VFC+T+ L+ V+AL G+L Q+ER L + RV +ATDV Sbjct: 241 PASCVVFCNTKRDCQDVYDALSGQDISVLALHGDLEQRERDQVLVRFSNRSCRVLVATDV 300 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 AARG+D+ +LE+V++ ELS +PE +HR GRT RAG+KG++V FV P M R Sbjct: 301 AARGLDIKELEMVVNYELSFDPEVHVHRIGRTARAGQKGLAVSFVAPSEMVR 352 >gi|238023679|ref|YP_002907911.1| ATP-dependent RNA helicase DbpA [Burkholderia glumae BGR1] gi|237878344|gb|ACR30676.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1] Length = 465 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 194/354 (54%), Gaps = 8/354 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY+ +T +Q A L L +D++ A+TGSGKT AF LAL + L A RF A+ Sbjct: 27 GYLEMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDAR--RFEVQ----AM 80 Query: 79 AIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV +E+ L A+ V V GG + + L++GAHIVVGTPGR+ D Sbjct: 81 ILCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGRIMD 140 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+ L + L +VLDEAD MLD+GF DDI ++ P +R ++FSAT IT L+ Sbjct: 141 HLERGSLALGALNTLVLDEADRMLDMGFFDDIATVVRQCPTERLTMLFSATYPEGITKLS 200 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + + ++ + + E I R V R +A+ +L ++ + I FC+T+ Sbjct: 201 RQFLRNPKEIRL-EETHDAGKIRQRFYEVTEDQRLHAVGLLLNHYRPASTIAFCNTKQQC 259 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 VL F +AL GEL Q+ER L + V +ATDVAARG+D+ LE VI Sbjct: 260 RDLLDVLTAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI 319 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + +++ +PE +HR GRTGRA ++G ++ + N R + + + W+P Sbjct: 320 NVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIEQAQGRELEWQP 373 >gi|194433859|ref|ZP_03066133.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012] gi|194417962|gb|EDX34057.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012] gi|320180214|gb|EFW55149.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905] Length = 457 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G RV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + +++ W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQITLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|161579561|ref|NP_931687.2| ATP-dependent RNA helicase DeaD [Photorhabdus luminescens subsp. laumondii TTO1] Length = 639 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 167/553 (30%), Positives = 267/553 (48%), Gaps = 32/553 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL + GY + +Q+ + L +DVL AQTGSGKT AF L L + AE Sbjct: 18 ILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNINAE----- 72 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV ++ V V GG + R L+ G IVV Sbjct: 73 -LKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRALRQGPQIVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 132 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + D V I + DI V ++ A+V L AI+ Sbjct: 192 PEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 252 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 312 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 371 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI 423 P+ E + +R +R + ++ + LL+K P E +AA L++ Sbjct: 372 VELPNAELLSQRRLERFAAN--VQQQLESSDLDQYRTLLSKLQPAEDLDIETLAAALLKM 429 Query: 424 HRAGLCAPEEITPVSLVSGRDRF--RDDSR--AFKVGGGSRDNFKGS-------SWFSLS 472 + P + P + R F RDD R F G D + + + Sbjct: 430 AQGE--RPLILPPDPVRRPRREFNERDDRRRNGFDDRGERSDRPRRERRDVGEMELYRIE 487 Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLD 528 VG E R ++ + I+ + IG I++ + +E+ D + RT L+ Sbjct: 488 VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLLSHFTRTRILN 547 Query: 529 KGIQLKYLGGEKP 541 K + ++ +G +P Sbjct: 548 KPMNMQLMGDAQP 560 >gi|83652036|gb|ABC36100.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264] Length = 562 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/397 (36%), Positives = 210/397 (52%), Gaps = 15/397 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY +T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 120 LAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 175 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 176 --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 233 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 234 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 293 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E S I R V +R +A+ +L+++ + I FC+T Sbjct: 294 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNT 352 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 353 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 412 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA ++G ++ + + R + + V W P Sbjct: 413 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALGRDVEWHPLA 472 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407 ++A D L P+ I G K + DVL Sbjct: 473 ELKA----DGNEPLLPPMETLQILGGRKDKIRPGDVL 505 >gi|311032368|ref|ZP_07710458.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. m3-13] Length = 481 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 203/374 (54%), Gaps = 7/374 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +AL Y+ T+VQE ++ L + D++V +QTGSGKT AF + L + E Sbjct: 9 NLGEDIVKALKSLNYLKPTNVQEEVIPKALAKSDIIVKSQTGSGKTAAFAVPLCDLVHWE 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P AL + PTRELA QV ++ + V G S R++ +L+ + Sbjct: 69 ENK------PQALVLTPTRELAAQVKDDITNIGRYKRVKATAIYGKQSFQRQKLELKQKS 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L++S L+ +V+DEADEML++GF D +E I+ PK R ++F Sbjct: 123 HIVVGTPGRVLDHLEKGTLDVSRLEYLVIDEADEMLNMGFIDQVESIIQMLPKSRVTMLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGA 244 SAT+ I L+ Y + V + I S I++ V ++ ++ +I Sbjct: 183 SATLPEDIKQLSNQYMTNPVFIEIESGGLTTDRIEHIWYEVGEGEKKFLLLKDITVVENP 242 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVFC+T+ V + + L + L G L Q++R + + + G R IATDVA Sbjct: 243 DSCIVFCATQEEVDKVHRNLHRAGYPCGKLHGGLVQEDRFSVMNAFKRGEFRYLIATDVA 302 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 +RGID+ D+ LVI+ ++ S+ E +HR GRT RAG+ G ++ +I + E + Sbjct: 303 SRGIDIEDISLVINYDIPSDKERFVHRIGRTARAGKSGKAITLISTSEHHHLEEIEDFIG 362 Query: 365 VSVVWEPAPSVEAI 378 + + AP EA+ Sbjct: 363 IKISRAEAPKREAV 376 >gi|161506153|ref|YP_001573265.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867500|gb|ABX24123.1| hypothetical protein SARI_04344 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 649 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|296329829|ref|ZP_06872313.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676555|ref|YP_003868227.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii str. W23] gi|296152868|gb|EFG93733.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414799|gb|ADM39918.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii str. W23] Length = 479 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 199/347 (57%), Gaps = 8/347 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F+N I I AL GY T VQ++++ L KD++V +QTGSGKT +FG+ L Sbjct: 1 MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 LA+ D + P AL + PTRELAVQV ++ + + G S +++ Sbjct: 61 CE--LADWDE----NKPQALILTPTRELAVQVKEDITNIGRFKRIKATSVFGKSSFDKQK 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +L+ +H+VVGTPGR+ DHI L + L +V+DEADEML++GF + +E I+ P Sbjct: 115 AELKQKSHMVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R ++FSAT+ I L++ Y ++ + I + +I++ + V ++ + + ++ Sbjct: 175 ERTTMLFSATLPEDIEKLSRQYMQNPQHIEIKAAGLTTKNIEHAVIQVREENKFSLLKDV 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L ++I+FC T+ V++ T L + + + G + Q++R + + + G R Sbjct: 235 LMTENPDSSIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARGID+ ++ LVI+ +L E+ +HR+GRTGRAG KG ++ Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI 341 >gi|326335491|ref|ZP_08201678.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692257|gb|EGD34209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 572 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 213/380 (56%), Gaps = 14/380 (3%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56 M +FE + + EA+ + G+ + VQ+A + P L D++ AQTG+GKT AFG Sbjct: 1 MNLFETLGLSAPLLEAIDDLGFERPSEVQQAAI-PVLLAVPTDMVALAQTGTGKTAAFGF 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L L+ + + L +APTREL +Q+ EL+ YAK V + GG S+ Sbjct: 60 PLLH-LINPTEHITQG-----LILAPTRELCLQIASELKQ-YAKYMPQVHIVAIYGGASI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R+L+ GAHI+V TPGR+ D +R + ++I+H+ +LDEADEML++GF +DI IL Sbjct: 113 EEQARNLKKGAHIIVATPGRMQDMMRREFVSITHINYCILDEADEMLNMGFYEDIRAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 +P+++ +FSAT+ + +AK + + I +N+ ++ + +V R A Sbjct: 173 ETPREKNTWLFSATMPTEVAKIAKEFMHHPKEITIGHKNQASDNVLHECYIVNGRQRYEA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + + + + ++VFC T+ + L E + AL G+LSQ +R ++ R + Sbjct: 233 LKRLADANPSIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQ 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARGID+ D+ VIH +L E HRSGRTGRAG+ G+S+ ++ ++ + Sbjct: 293 IQMLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSETK 352 Query: 355 RAERLFREANVSVVWEPAPS 374 R + + R + ++ PS Sbjct: 353 RIKTIERIIQKTFEYKTIPS 372 >gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. spizizenii str. W23] gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. spizizenii str. W23] Length = 494 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/404 (32%), Positives = 221/404 (54%), Gaps = 27/404 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +A++ G+ T +Q + L KDV+ AQTG+GKT AFG+ L Sbjct: 9 NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV------ 62 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ +P S + A+ IAPTRELA+QV EL + V GG + R+ R L+ Sbjct: 63 -EKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HI+VGTPGRL DHI + + ++++ VV+DEADEML++GF DDIE IL + P + + L+ Sbjct: 122 PHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A+ + + V + ++ S+I + V + + + +L Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF T+ V + L + + G+L+Q +R AL+ ++G V +ATDVA Sbjct: 242 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARG+D+ + V + ++ +PE+ +HR GRTGRAG+ GM++ F+ P R + + R Sbjct: 302 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR-- 354 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 ++E +R R +++P ++++G ++ V+ L Sbjct: 355 ----------AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVERL 387 >gi|242399022|ref|YP_002994446.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM 739] gi|242265415|gb|ACS90097.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM 739] Length = 382 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/374 (36%), Positives = 205/374 (54%), Gaps = 16/374 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+ +G+ T +Q+ ++ LR + D++ +QTG+GKT AF L L + E Sbjct: 15 AVRRKGFEKPTDIQKEVIPRLLRGDNDIIGQSQTGTGKTAAFALPLIELIDEEIKEVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ I PTRELA+QV E+ L K + V GG + + R+L+ G HIVVGTP Sbjct: 73 ----AIVITPTRELAIQVADEIRSLRGKRRINVLPVYGGQPIGPQIRNLRRGVHIVVGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L++ + +LDEAD MLD+GF +DIE IL + +++R+LMFSATI Sbjct: 129 GRVIDHIERGTLSLDGVSYFILDEADRMLDMGFIEDIERILRHTSEEKRVLMFSATIPRE 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAKNAIV 249 I LA+ Y KD + I + ++ V + R + + +IL ++G IV Sbjct: 189 ILRLARRYLKDYEVIRIQDRSLAPELVEQIYFEVRPNKRFSLLCSILDEKDFYG----IV 244 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ L + V AL+G++ Q+ R L+ R G+ RV +ATDVAARGID Sbjct: 245 FCQTKRETRELASKLKTKGYSVEALNGDIPQKGRERILERFRKGKIRVLVATDVAARGID 304 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + DL VI+ + NPE +HR GRTGR G++G ++ FV P + + + R A V + Sbjct: 305 VKDLTHVINYSIPQNPEAYVHRIGRTGREGKRGKAITFVAPWESPKLRD-IERVARVKIK 363 Query: 369 WEPAPSVEAIRERD 382 P+ R+RD Sbjct: 364 EMAYPTEYGRRKRD 377 >gi|85857908|ref|YP_460110.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB] gi|85720999|gb|ABC75942.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB] Length = 525 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 126/385 (32%), Positives = 206/385 (53%), Gaps = 8/385 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E +P I +A + G+ L VQ + L +D+++ ++TGSGKT A+ L + Sbjct: 42 LECLPPTIRDAATRAGWTKLMDVQAKAIPYILARRDLMIQSKTGSGKTGAYLLPILG--- 98 Query: 64 AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 R P A A+ + PTRELA+QV RE L A +G+ AV GGV H + + Sbjct: 99 ----RLDPRKAACQAMILVPTRELALQVSREALLLSADSGIRTAVAYGGVGYHAQLEAFR 154 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 GA +V+GTPGR+ DH+ L++ L +V DEAD ML +GF D++ I + P++ Sbjct: 155 EGAQLVIGTPGRILDHLIRSSLSLKALSILVFDEADRMLSMGFYPDMKRIQEFIPREINA 214 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 + SAT + LA + + ++++ + ++ ++ LV ++ ++V I+ Sbjct: 215 YLLSATFPSHVLRLAGEFLRKPELLSLSRDQIHVTETEHVYYLVPGMGKERSLVRIIEAE 274 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +AI+FC+T+A+V + VL + LS ELSQ+ R + +R G R +ATD Sbjct: 275 NPVSAIIFCNTKATVHFVSVVLKRFGYDADELSSELSQKAREKVMARIRSGLLRFLVATD 334 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+PDL VI E +PE +HR+GRTGR G G+++ ++ Q R + + Sbjct: 335 VAARGIDIPDLSHVIQYEPPEDPEAYIHRAGRTGRKGASGVAISLVAGMEQFRLRDIAKS 394 Query: 363 ANVSVVWEPAPSVEAIRERDAQRIL 387 ++ + P E + +QR++ Sbjct: 395 FSIDIQERSLPKDEEVETTVSQRVI 419 >gi|300926734|ref|ZP_07142509.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1] gi|301326919|ref|ZP_07220211.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1] gi|300417310|gb|EFK00621.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1] gi|300846390|gb|EFK74150.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1] Length = 457 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL H++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSILPLEAE 381 >gi|255589747|ref|XP_002535074.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223524093|gb|EEF27309.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 465 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/329 (40%), Positives = 187/329 (56%), Gaps = 5/329 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T++Q A + LR +DVL +AQTGSGKT AF L L +LL ++R P Sbjct: 17 AIAEIGYDEPTAIQRAAIPAILRGEDVLGAAQTGSGKTAAFALPLLQSLL--DNRDGPRQ 74 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L + PTRELAVQVG + L + V VA+ GGVS++ + L+ GA IVV T Sbjct: 75 LH-GLVLVPTRELAVQVGESIRKLVSHLSMPVKVAIVFGGVSINPQMMALRGGADIVVAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D I L IS +VLDEAD +LDLGF +++ IL PK+R+ L FSAT P Sbjct: 134 PGRLLDLIDHNALKISRAAMLVLDEADRLLDLGFSEELNRILALLPKQRQNLFFSATFPP 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 A+ LA + R+ + SE DI RA+ V + R + ++++ H + +VF Sbjct: 194 AVQKLADSILHQPARIEVLSEPASKPDIVQRAIAVDVPRRTMLLKHLIQEHQWRGVMVFV 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L + + + GELSQ R+ L R GR + +ATDVAARGID+ Sbjct: 254 ATKYAADHVADKLNRNGIRAASFHGELSQGARTETLTDFRSGRLQALVATDVAARGIDIA 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGR 340 L V++ +L + + HR GRTGRA R Sbjct: 314 RLPAVVNYDLPRSAVDYTHRIGRTGRAAR 342 >gi|119502760|ref|ZP_01624845.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080] gi|119461106|gb|EAW42196.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080] Length = 582 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/427 (33%), Positives = 231/427 (54%), Gaps = 24/427 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + E L GY T +Q + L +DV+ AQTG+GKT AF L + + + + Sbjct: 16 LPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILANIDVK- 74 Query: 67 DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P AL + PTRELA QV + G+ + GG + ++ + L+ G Sbjct: 75 -----VRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLREGT 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHI + ++++ + AVVLDEADEML +GF DD++ IL +PK+R++ +F Sbjct: 130 HIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALF 189 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + +A + + +++A+ + +I+ L + + A+ +L + + Sbjct: 190 SATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKLEALKRLLAFEDTE 249 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF TR S + + L + + L+G++ Q+ R + ++ G V +ATDVAA Sbjct: 250 GVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDVAA 309 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFRE 362 RG+D+ + VI+ ++ + E +HR GRTGRAGRKG ++ FV+P+ M R ERL R+ Sbjct: 310 RGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIERLTRQ 369 Query: 363 ANVSVVWEPAPSVEAIRERDAQR--ILQDPL---FLDSIQGDEKKMVDVLLAKHDPEKIA 417 S+ PSV AI DA+R D + D +Q + ++++D L D IA Sbjct: 370 ---SIPEIKLPSVLAI---DAKRREAFADSIRTALADPMQAELEEIIDTLNKDSDYRSIA 423 Query: 418 ---AGFL 421 AG L Sbjct: 424 VALAGML 430 >gi|238755823|ref|ZP_04617154.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473] gi|238705981|gb|EEP98367.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473] Length = 434 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/385 (35%), Positives = 205/385 (53%), Gaps = 16/385 (4%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLALAIA 81 +T VQ A L L+ +DV A+TGSGKT AFG+ L D+ + AL + Sbjct: 1 MTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEFVTQALVLC 53 Query: 82 PTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 PTRELA QV +EL L + + ++ +C GG + + L + HIVVGTPGR+ +H+ Sbjct: 54 PTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGTPGRIQEHL 112 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 R + L + LK +VLDEAD MLD+GF D I ++ +P +R+ L+FSAT I ++ Sbjct: 113 RKRTLVLDDLKVLVLDEADRMLDMGFTDAINDVISYTPPQRQTLLFSATYPAGIERISAK 172 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259 Q++ + V + SE + I R ++++L ++ + +VFC+T+ Sbjct: 173 VQREPLNVEVESEGEDPA-IQQVFFETTREKRLPLLISVLSHYQPASCVVFCNTKKDCQS 231 Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 L V+AL G+L Q++R L + RV +ATDVAARG+D+ DLELV++ Sbjct: 232 VYDTLESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKDLELVVNF 291 Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 EL+ +PE +HR GRTGRAG G++V + + RA + + V W PA V Sbjct: 292 ELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPSEMGRAHAIEDYLQIKVKWTPAEQV---- 347 Query: 380 ERDAQRILQDPLFLDSIQGDEKKMV 404 R IL+ + I G K + Sbjct: 348 SRSTNAILEPEMVTLCIDGGRKAKI 372 >gi|301159830|emb|CBW19349.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131640|gb|ADX19070.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 629 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRVLRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis H37Ra] Length = 563 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 171/539 (31%), Positives = 277/539 (51%), Gaps = 54/539 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ + GY + T++Q A + + DV+ AQTG+GKT AF + + S + + Sbjct: 22 PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79 Query: 68 RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P AL + PTRELA+QV GR +L + + V GG S + L+ Sbjct: 80 -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DH+ L++S + +VLDEADEML +GF DD+E IL +P+ +++ Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ PAI L+ Y D V ++ +I + VA + +A+ +L Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEP 249 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ + + L F A+SG++ Q +R + +RDG + +ATDV Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360 AARG+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ + + E+ Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412 R+ ++ P+VE + + QR+ P F DSI G E +++V+ +HD Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRV---PKFADSITNALAGPGIELFRRLVEEYEREHD 420 Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 IAA R G L AP+ P+S + R R + R + + Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 + ++VG + K ++ + G++R G IR+ PD + VE+ A L R T+K Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526 >gi|312892306|ref|ZP_07751801.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM 18603] gi|311295090|gb|EFQ72264.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM 18603] Length = 428 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 185/344 (53%), Gaps = 2/344 (0%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ + I +AL GY N T +QE + L KD+L AQTG+GKT AF + + Sbjct: 3 FENLKLIEPILKALKHEGYTNPTPIQEQSIPIILERKDLLGCAQTGTGKTAAFAIPILQI 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E + L + PTRELA+Q+ TG+ V GGVS H + L Sbjct: 63 LYQEKVQNRDHKGIKTLILTPTRELAIQIDESFAAYGKHTGLKHLVIFGGVSQHHQVEAL 122 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I+V TPGRL D ++ K +++ LK +VLDEAD MLD+GF +D++ I+ P KR+ Sbjct: 123 KRGVDILVATPGRLLDLVQQKFVHLESLKILVLDEADRMLDMGFVNDVKKIIAKIPVKRQ 182 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ I TLA +V + + I V +D+ + +++IL+ Sbjct: 183 TLFFSATMPKEIQTLADTILNKPEKVEVTPVSSTADTIQQGIYFVDKNDKKSLLIHILKD 242 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + A+VF T+ + K L A+ G SQ R AL ++ R+ +AT Sbjct: 243 KKIETALVFTRTKHGADKVVKDLIRVGITAEAIHGNKSQNARQRALTNFKNRSTRILVAT 302 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+AARGID+ DL VI+ EL + PE +HR GRTGRAG G+++ Sbjct: 303 DIAARGIDVDDLTHVINYELPNVPETYVHRIGRTGRAGASGIAL 346 >gi|221107786|ref|XP_002161873.1| PREDICTED: vasa-related protein CnVAS1 [Hydra magnipapillata] Length = 797 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 190/348 (54%), Gaps = 8/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I E + + Y+ T VQ+ + +D++ AQTGSGKT AF + + +TL+ Sbjct: 359 NIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGKTAAFLIPVLNTLMQF 418 Query: 66 ----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 S APLAL IAPTRELAVQ+ +E T + V GGV V R + Sbjct: 419 RSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGVQVAYHLRQV 478 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPK 178 Q G H++VGTPGRL D + + +++++LK ++LDEAD MLD+GF +I+ I+ D PK Sbjct: 479 QQGCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDFDMPPK 538 Query: 179 K-RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 + R LMFSAT I LA + + V + I HSDI + V S + + ++ Sbjct: 539 EDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEESAKRDKLIE 598 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL G +VF T+ L ++ F ++ G+ QQ+R AL + G V Sbjct: 599 ILDTEGTNRNLVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAEFKAGTQHV 658 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 IAT VAARG+D+ D++ VI+ +L E +HR GRTGR G KG ++ Sbjct: 659 LIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAI 706 >gi|167576699|ref|ZP_02369573.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis TXDOH] Length = 465 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/397 (36%), Positives = 210/397 (52%), Gaps = 15/397 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY +T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 23 LAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E S I R V +R +A+ +L+++ + I FC+T Sbjct: 197 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA ++G ++ + + R + + V W P Sbjct: 316 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALGRDVEWHPLA 375 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407 ++A D L P+ I G K + DVL Sbjct: 376 ELKA----DGNEPLLPPMETLQILGGRKDKIRPGDVL 408 >gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus subsp. fetus 82-40] gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus subsp. fetus 82-40] Length = 624 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 197/347 (56%), Gaps = 9/347 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 ++ I EAL E Y T +Q+ + ++ KD+L A+TG+GKT AF L + L + Sbjct: 7 DLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEKLSSK 66 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 E ++ P + L + PTRELA QV + ++ K GGVS + + + L++G Sbjct: 67 ERNKKRPQTR--VLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQALKSG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVV TPGRL D L++ H+ +V DEAD M D+GF DI+ I+ P+KR+ L+ Sbjct: 125 IDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQNLL 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT + +L + KD +R+ I +N +I R +LV DRD + + G Sbjct: 185 FSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILV---DRDKKMELLNEVFGV 241 Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ A+VF T+ S + + L F V AL G+ SQ RS L+ ++G+ ++ +AT Sbjct: 242 ESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVAT 301 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+AARG+D+ +L VI+ EL + PE+ +HR GRTGRAG G+++ ++ Sbjct: 302 DIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLV 348 >gi|325279879|ref|YP_004252421.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311688|gb|ADY32241.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM 20712] Length = 374 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/339 (38%), Positives = 191/339 (56%), Gaps = 1/339 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI Q I +A+ E+GY T +Q+ + L KD+L AQTG+GKT +F + + LL Sbjct: 7 NIIQPILKAIEEKGYNRPTPIQQQAIPVALSRKDILGCAQTGTGKTASFAIPIIQ-LLQA 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + AL + PTRELA+Q+ L+ T V V GGV+ + LQ G Sbjct: 66 DPIITKRKGVKALILTPTRELALQISECLDEYARYTPVRHGVMFGGVNQRPQVTMLQKGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + L++ +K VLDEAD MLD+GF DI+ IL PK+++ L F Sbjct: 126 DILVATPGRLLDLMSQGFLSLDQVKYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I TLA K+ V++ I E+ I+ V +++ ++++LR + Sbjct: 186 SATMPDSIVTLASALLKNPVKITITPESPTVDAIEQFVYFVEKAEKGRLLISLLRKAENQ 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + R +VL + A+ G SQ R +AL + G+ RV +ATD+AA Sbjct: 246 SVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 RGID+ +L LVI+ +L PE +HR GRTGRAG G + Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGTA 344 >gi|260460697|ref|ZP_05808947.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum WSM2075] gi|259033274|gb|EEW34535.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum WSM2075] Length = 525 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 201/366 (54%), Gaps = 8/366 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+++ GY T +Q + L KDVL AQTG+GKT +F L + + L Sbjct: 10 PKVLS-AVTDAGYTQPTPIQAGAIPHALLGKDVLGIAQTGTGKTASFVLPMLTRLEKGRA 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P L + PTRELA QV + +A+ IGGVS + + L+ GA + Sbjct: 69 R---ARMPRTLILEPTRELAAQVEENFIKYGKNHKLNIALLIGGVSFDEQDKKLERGADV 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I + P R+ L FSA Sbjct: 126 LIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQTLFFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA- 244 T+ P IT L + + VRV ++ ++I R V D+ + N+++ A Sbjct: 186 TMPPEITKLTEKFLHAPVRVEVSKAASAATNIIQRLVKSGSKPWDKRETLRNLIKAEDAE 245 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + VS + L ++ F AL G++ Q+ R L RDG+ R +A+DV Sbjct: 246 LKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYLVASDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G S + ++ + + + R Sbjct: 306 AARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDAIERLI 365 Query: 364 NVSVVW 369 + W Sbjct: 366 GTKIEW 371 >gi|320637247|gb|EFX07073.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str. G5101] Length = 457 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E Y+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELDYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFCETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVTLEAE 381 >gi|291086515|ref|ZP_06356033.2| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220] gi|291067655|gb|EFE05764.1| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220] Length = 658 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|213579752|ref|ZP_03361578.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 556 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|191171034|ref|ZP_03032585.1| ATP-independent RNA helicase DbpA [Escherichia coli F11] gi|190908766|gb|EDV68354.1| ATP-independent RNA helicase DbpA [Escherichia coli F11] Length = 457 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --AFVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAI 378 P+ +I Sbjct: 369 LPANSSI 375 >gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 507 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 192/344 (55%), Gaps = 13/344 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L KDVL AQTG+GKT +F L + + L Sbjct: 11 PRVL-KAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITILGKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L +SA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDRDNAIVNILR 240 T++P I + + AV++ +A + I+ + + + + +D+ + ++R Sbjct: 187 TMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQITPTRKERSFADKRAVLRALIR 246 Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G NAI+FC+ + V K L +H F + G+L Q +R+ L RDG + Sbjct: 247 AEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLDQSQRTKTLDGFRDGTLHLL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 +A+DVAARG+D+P + V + +L ++PE+ +HR GRTGRAGRKG Sbjct: 307 VASDVAARGLDIPAVSHVFNFDLPTHPEDYVHRIGRTGRAGRKG 350 >gi|28872121|ref|NP_794740.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato str. DC3000] gi|301384383|ref|ZP_07232801.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato Max13] gi|302062325|ref|ZP_07253866.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato K40] gi|302132329|ref|ZP_07258319.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855375|gb|AAO58435.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato str. DC3000] gi|331014545|gb|EGH94601.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 202/369 (54%), Gaps = 13/369 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 19 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 76 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTLLFSATYPVGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L++V++ EL+ + E +HR GRTGRAG G++V ++ + +RA + + W+ Sbjct: 310 ALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIEELQKAPLNWQQ 369 Query: 372 APSVEAIRE 380 S+ +I+E Sbjct: 370 YDSL-SIKE 377 >gi|109897939|ref|YP_661194.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c] gi|109700220|gb|ABG40140.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica T6c] Length = 447 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/356 (35%), Positives = 212/356 (59%), Gaps = 12/356 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P +G+AL +G+ T +Q + L KD++ S++TGSGKT+AF L Sbjct: 3 FSDLPLDHRLGKALEIKGFTEATEIQAQAIPYALMGKDLIASSKTGSGKTLAFLLPAVQR 62 Query: 62 LLAENDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 +L + P S P L +APTRELA QV +L+WL AK + A+ +GG + + + + Sbjct: 63 VLTKQ----PLSRKDPRVLILAPTRELAKQVFFQLKWLIAKHQLKAALILGGENFNDQVK 118 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-LDSSPK 178 L++ VVGT GR+ DH+ GK L ++ L+ +++DEAD MLDLGF + ++ I + + Sbjct: 119 ALRHYPQFVVGTAGRIADHLAGKSLYLNGLEMLIMDEADRMLDLGFSEQLKQINAAADHR 178 Query: 179 KRRMLMFSATI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIV 236 KR+ +MFSAT+ + A+ L ++ K R++I + +H DI R L ++ ++ + Sbjct: 179 KRQSMMFSATLDNAALHYLTQSMLKAPHRISIGISSAEHKDIQQRFFLADNVTHKERLLT 238 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +++ + IVF +TRA R + +L E +ALSG+LSQ +R+N + G+ Sbjct: 239 HMINEKDHRQVIVFTATRADTERLSNLLKEQGLYSIALSGDLSQGQRNNIMSEFGRGQQH 298 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 + + TD+A+RG+DL ++ LV++ +L + +HR GRTGRAG KG +V FV P++ Sbjct: 299 ILVTTDIASRGLDLLNVSLVVNFDLPKLADEYVHRVGRTGRAGNKGEAVSFVGPKD 354 >gi|254448048|ref|ZP_05061512.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015] gi|198262474|gb|EDY86755.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015] Length = 586 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 152/506 (30%), Positives = 263/506 (51%), Gaps = 22/506 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + + L+ GY + +Q + P + +D+L +AQTG+GKT AF L L + Sbjct: 13 LPAPLLKTLAHIGYEQPSPIQAESIPPLMEGRDLLGTAQTGTGKTAAFALPLLT------ 66 Query: 67 DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 R A A P L +APTRELA+QV + A + I GG + + + L+ G Sbjct: 67 -RIDTAVAQPQVLVLAPTRELAIQVSEAFKSYAAGMNQFRVLPIYGGADIGGQIKALKRG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 ++VGTPGR+ DH+R K L + L++VVLDEADEML +GF +D+ +IL +P++R++ + Sbjct: 126 PQVIVGTPGRVMDHLRRKTLKLDQLQSVVLDEADEMLRMGFIEDVNWILSHTPEERQIAL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I L+ Y + V + I ++ I+ LV +++ +A+ IL Sbjct: 186 FSATMPAPIKKLSAQYLNNPVEIKIKADTATVDRIEQSYWLVKGTNKLDALTRILEVEDF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F T+ L ++ A++G+++Q+ R ++ ++D + + +ATDVA Sbjct: 246 DGVIMFARTKNMTVELADKLEARGYRSAAINGDMTQKIRERTIKQLKDEKIDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFR 361 ARGID+ + VI+ ++ + E +HR GRTGRAGR G ++ FV P +++ R E+ R Sbjct: 306 ARGIDVARVSHVINFDIPYDTEAYVHRIGRTGRAGRDGKAILFVAPRERHLLRAIEKATR 365 Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKH--DPEKIAA 418 + + +V+ RE +RI++ S + K++V LL ++ D + +A Sbjct: 366 QTIEPMTLPCRETVQKQREEKLVKRIVE--AAEQSPREGSKELVLRLLEENGIDAQHLAV 423 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 L + P + P S + + + +A G R++ F ++VG K K Sbjct: 424 TLLEMVHTEPTLPAQDFPEPRESAAGKGKRERKA-----GRREDPVPMESFHIAVGRKHK 478 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRV 504 + ++ + +GI Q IG I++ Sbjct: 479 VKPGNIVGAIANEAGIESQHIGRIQL 504 >gi|221134107|ref|ZP_03560412.1| DEAD/DEAH box helicase domain-containing protein [Glaciecola sp. HTCC2999] Length = 442 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 192/338 (56%), Gaps = 2/338 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ +A+S++GY + +Q+ + P L +DV+ +AQTG+GKT AF L + + L + Sbjct: 12 PAVL-QAVSDQGYTQPSPIQQQAIGPVLDGQDVMAAAQTGTGKTGAFALPIVNLLSETSK 70 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R SP + AL + PTRELA QV ++ T + V GGVS++ + + L+ G I Sbjct: 71 RPSPNNIK-ALILTPTRELAAQVAESVKACAQHTQLRSMVVFGGVSINPQMQGLRRGCDI 129 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL D + + S L+ +VLDEAD MLD+GF DI+ I+ P KR+ L+FSA Sbjct: 130 LIATPGRLLDLHQQNAVKFSQLEILVLDEADRMLDMGFIHDIKRIMKLIPAKRQTLLFSA 189 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LAK + ++ + +++ +N + V S + ++ +++ + + Sbjct: 190 TFSDPIRELAKQFTQEPIEISVTPKNSTTPLVKQLLVHAEKSSKTTLLIKLIKDNDWQQV 249 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ +R + L A+ G SQ R+ AL + G RV +ATD+AARG Sbjct: 250 LVFTRTKHGANRIAQKLGNKNITAAAIHGNKSQGARTKALADFKSGDVRVLVATDIAARG 309 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ID+ L VI+ +L PE+ +HR GRTGRAG G +V Sbjct: 310 IDIDQLPNVINYDLPHVPEDYVHRIGRTGRAGATGHAV 347 >gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886] gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886] Length = 618 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 203/359 (56%), Gaps = 12/359 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64 ++ + I AL G+V+ T +Q A + + D L AQTG+GKT AF L L + L L Sbjct: 12 DLAENILSALDAIGFVSPTPIQAASIPLLMTGVDALGKAQTGTGKTAAFSLPLLNKLDLG 71 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123 + P A+ +APTRELA+QV E++ L K G+ V GG S+ + R L+ Sbjct: 72 QR-------KPQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYGGASIVDQMRALRA 124 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHIVVGTPGR+ D I + L + + VLDEADEML +GF DD+ +I++ +P+ + + Sbjct: 125 GAHIVVGTPGRVKDLINRERLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQRV 184 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ P + + + ++ R+++A NR ++ + +V ++D A+ +L Sbjct: 185 LFSATMPPMVKEIVDRFLREPARIDVAGSNRTVEKVEQQFWVVKGVEKDEAMSRLLETEE 244 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +IVF TR R L+ F+ AL G++ Q R ++ ++ G + +ATDV Sbjct: 245 TDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDV 304 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERL 359 ARG+D+P + V + ++ + E+ +HR GRTGRAGR G ++ ++ N M R ER+ Sbjct: 305 VARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTIERV 363 >gi|121595996|ref|YP_987892.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp. JS42] gi|120608076|gb|ABM43816.1| ATP-dependent RNA helicase DbpA [Acidovorax sp. JS42] Length = 469 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 190/336 (56%), Gaps = 10/336 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73 L + GY +T +Q A L L+ +D++ A TGSGKT AFGLA+ DR +P Sbjct: 29 LQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMV-------DRLNPRWF 81 Query: 74 APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A L + PTRELA QV E+ L A+ + V GGV + L+NGAHIVVGTP Sbjct: 82 AVQGLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIASLENGAHIVVGTP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L+I++LK +VLDEAD MLD+GF DIE ++ P +R+ L+FSAT Sbjct: 142 GRVMDLMERGKLDIANLKTLVLDEADRMLDMGFLADIETVVRQCPAERQTLLFSATYPDG 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ + + V +A+++ I R V ++ + + +L + ++I FC+ Sbjct: 202 IAGLAQRFMRAPQMVKVAAQH-GAGKIAQRWYEVDAREKVDVVARMLAHFRPASSIAFCN 260 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L F +AL GEL Q+ER L + V +ATDVAARGID+ D Sbjct: 261 TKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAARGIDIAD 320 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L VI+ +++ +PE +HR GRTGR +G+++ ++ Sbjct: 321 LSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLV 356 >gi|145727|gb|AAA23674.1| deaD [Escherichia coli] Length = 571 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L L E Sbjct: 34 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|167614869|ref|ZP_02383504.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis Bt4] Length = 465 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/397 (36%), Positives = 210/397 (52%), Gaps = 15/397 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY +T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 23 LAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E S I R V +R +A+ +L+++ + I FC+T Sbjct: 197 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA ++G ++ + + R + + V W P Sbjct: 316 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALGRDVEWHPLA 375 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407 ++A D L P+ I G K + DVL Sbjct: 376 ELKA----DGNEPLLPPMETLQILGGRKDKIRPGDVL 408 >gi|34498308|ref|NP_902523.1| ATP-dependent RNA helicase DbpA [Chromobacterium violaceum ATCC 12472] gi|34104162|gb|AAQ60521.1| ATP-dependent RNA helicase dbpA [Chromobacterium violaceum ATCC 12472] Length = 460 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 204/364 (56%), Gaps = 8/364 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L GY +T++Q A L L +D++ A+TGSGKT AFGL L S++ N Sbjct: 11 LPAPLLSNLDSLGYHQMTAIQAASLPAILEGRDLIAQAKTGSGKTAAFGLGLLSSI---N 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 R+ A L + PTRELA QV +E+ L A + V GG + + L++GA Sbjct: 68 PRWFGVQA---LVMCPTRELADQVAQEIRRLARAIDNIKVVTLTGGTPMGPQIGSLEHGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGRL DH+ + LN++ +K +VLDEAD M+D+GF ++I I+ + P+ R+ L+F Sbjct: 125 HIVVGTPGRLQDHLFRETLNLTGVKTLVLDEADRMIDMGFIEEIVGIVRACPRTRQTLLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I + + K+ V V + S ++ I+ V R + ILR+ Sbjct: 185 SATYPEDIRKASAQFLKNPVEVKVESLHKA-DHIEQWFYKVKPETRLETVSRILRHLRPT 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +A+ FC+TR + L E F + L G+L Q+ER L + A V +ATDVAA Sbjct: 244 SALAFCNTRERCKELVRELQEQGFHALTLHGDLEQRERDQILLRFANKSATVLVATDVAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ +L++VI+ +++ +PE +HR GRTGR + G+++ + + +R ++ Sbjct: 304 RGLDIKELDVVINVDVTHDPEVHIHRIGRTGRGEQHGLALTLATDSEAKRLVQIENYQQA 363 Query: 366 SVVW 369 + W Sbjct: 364 ELTW 367 >gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus] Length = 435 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/371 (33%), Positives = 209/371 (56%), Gaps = 13/371 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q + L KDV+ A+TGSGKT AF L + LL R+ AL + PT Sbjct: 26 TKIQREAIPLVLEGKDVIGLAETGSGKTAAFALPILQALLENPQRY------FALILTPT 79 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142 RELA Q+ + E L + GV AV +GG+ +H + L+ HI++ TPGRL DH+ K Sbjct: 80 RELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEKKPHIIIATPGRLVDHLENTK 139 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G N+ +K +++DEAD +L++ F ++ IL P++RR L+FSAT++ + L + + Sbjct: 140 GFNLRQIKFLIMDEADRILNMDFEVEVNKILRVMPRERRTLLFSATMTKKVQKLQRASLR 199 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 + V+V ++++ + + + + + +D +V+IL N ++FC T + R Sbjct: 200 NPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNNFMIFCGTCNNTVRTAL 259 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 +L F V L G++SQ +R AL R + I+TDVA+RG+D+P +++VI+ ++ Sbjct: 260 LLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILISTDVASRGLDIPHVDIVINFDIP 319 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAIR 379 ++ ++ +HR GRT RAGR G S+ I Q + +R E+L + + + V ++ Sbjct: 320 THSKDYIHRVGRTARAGRSGRSITFITQYDVELYQRIEQLISK-QLPLYPTEEEEVMLLQ 378 Query: 380 ER--DAQRILQ 388 ER +AQRI++ Sbjct: 379 ERVSEAQRIVK 389 >gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T] gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T] Length = 441 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 126/352 (35%), Positives = 196/352 (55%), Gaps = 18/352 (5%) Query: 4 FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ + + +A++ GY T VQ+ + + +D+LVS+ TGSGKT AF L + Sbjct: 3 FENLGLAEELLKAVASTGYTTPTPVQQRAIPAAIAGRDLLVSSHTGSGKTAAFTLPALNR 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSV 114 ++ + R +P S P L + PTRELA QV G+ L WL A +GG + Sbjct: 63 II--DRRPAPGSGPRVLVLTPTRELAQQVEKAVQTYGKALRWLN------TACLVGGAPM 114 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + LQ +VV TPGRL DH+ + + +S ++ ++LDEAD MLD+GF +DI+ I+ Sbjct: 115 FAQIKQLQRQCDVVVATPGRLLDHLTRRKIKLSDVEVLILDEADRMLDMGFAEDIDAIVA 174 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDN 233 ++P KR+ L+FSAT+ + ++A +DA R+ I I+ R + L + Sbjct: 175 ATPAKRQTLLFSATLDGVVGSMATRMTRDAERIEIEVAQEDRGQIEQRLMFADDLGHKSR 234 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + +L G A+VF +T+ S + L E AL G++ Q +R+ L +R G Sbjct: 235 LLHALLGEDGMNQAVVFTATKRSADELSLALQEKGISAAALHGDMHQTQRNRTLDRLRQG 294 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R V +ATDVAARGID+ + VI+ + E+ +HR GRTGRAGR G+++ Sbjct: 295 RIGVLVATDVAARGIDVAGISHVINFDPPRQAEDYVHRIGRTGRAGRDGIAI 346 >gi|161723115|ref|YP_438416.2| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264] Length = 465 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/397 (36%), Positives = 210/397 (52%), Gaps = 15/397 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY +T +Q A L L D++ A+TGSGKT AF LAL + L A RF Sbjct: 23 LAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E S I R V +R +A+ +L+++ + I FC+T Sbjct: 197 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA ++G ++ + + R + + V W P Sbjct: 316 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALGRDVEWHPLA 375 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407 ++A D L P+ I G K + DVL Sbjct: 376 ELKA----DGNEPLLPPMETLQILGGRKDKIRPGDVL 408 >gi|26991630|ref|NP_747055.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440] gi|24986724|gb|AAN70519.1|AE016694_2 ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440] Length = 461 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 205/365 (56%), Gaps = 12/365 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY ++T +Q L L+ +D++ A+TGSGKT AFG+ L + + N R+ A Sbjct: 21 LEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +EL L A+ + + GGVS+ + L++GAHI+VGTPG Sbjct: 78 ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+ L + L +VLDEAD MLD+GF D I I+ +P +R+ L+FSAT I Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA ++ ++ +V + S H+D I+ R + + R A+ +L ++ ++ + FC Sbjct: 195 KQLAADFMRNPQQVKVES---LHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L AL G+L Q++R L M + + V +ATDVAARG+D+ Sbjct: 252 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ RA+ + N + W+ Sbjct: 312 GLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQNSPLRWDQ 371 Query: 372 APSVE 376 S++ Sbjct: 372 LDSLK 376 >gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1] gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1] Length = 554 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 197/354 (55%), Gaps = 14/354 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A++E GY T +Q + P L KDVL AQTG+GKT +F L + TLLA Sbjct: 31 PKVL-KAINEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMI-TLLARG- 87 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 88 -RARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQDKLIDKGVDV 146 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L +S +K +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 147 LIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLFFSA 206 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-------ILR 240 T++P I + + R+ +A + +I+ ++ S +D ++ Sbjct: 207 TMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKRKVLRALID 266 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAI+FC+ + V K L ++ + + G+L Q +R+ L+ R+G R Sbjct: 267 AEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDLRFL 326 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351 +A+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++ Sbjct: 327 VASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRD 380 >gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium zucineum HLK1] gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium zucineum HLK1] Length = 513 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 185/339 (54%), Gaps = 6/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY T +Q + L+ +DVL AQTG+GKT AF L + L A + A Sbjct: 15 KAVAETGYTTATPIQAEAIPMALQGRDVLGIAQTGTGKTAAFTLPMIDRLAAGRAK---A 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL IAPTRELA QV E + A+ IGGVS + + L G +++ TP Sbjct: 72 RMPRALVIAPTRELADQVSASFEKYAMGQKLTWALLIGGVSFKDQEQKLDRGVDVLIATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF D+E I +P K++ L FSAT+ P Sbjct: 132 GRLLDHFERGKLLMTGVQIMVVDEADRMLDMGFIPDLERIFKLTPAKKQTLFFSATMPPE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249 IT L K + D VR+ + I V + +D + A+ ++ N IV Sbjct: 192 ITRLTKQFLNDPVRIEASRPATTAETITQYLVRIPSADPKAKRTALRELIGRAEINNGIV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+ + V K L +H F A+ G+L Q R L+ R+G ++ A+DVAARG+D Sbjct: 252 FCNRKTEVDIVAKSLKKHGFDAAAIHGDLDQATRMRTLESFRNGELKLLCASDVAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P + V + ++ + ++ +HR GRTGRAGR G + ++ Sbjct: 312 IPAVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAFMIV 350 >gi|300856701|ref|YP_003781685.1| putative RNA helicase [Clostridium ljungdahlii DSM 13528] gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528] Length = 525 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 148/511 (28%), Positives = 248/511 (48%), Gaps = 36/511 (7%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ + G+ + +Q + L DV+ AQTG+GKT+AFG + S + ++ Sbjct: 13 PKVL-QAIDDMGFEEPSQIQAESIPVILDGNDVIGQAQTGTGKTLAFGAPMLSKITTKSK 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 S AL + PTRELA+QV EL + V + GG + R+ R L+ G + Sbjct: 72 HIS------ALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLKRGMDV 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DHI+ K L++S+++ ++LDEADEMLD+GF +DIE I+ ++ R+ L+FSA Sbjct: 126 VVGTPGRILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENIIKATNSDRQTLLFSA 185 Query: 188 TISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 T+ I L+ Y K ++ + IA + DR ++ IL + Sbjct: 186 TMPDQIKKLSSRYMKSNIKSIKIAKNTLTVDKTKQYYYEIKQKDRFESLCRILDVDEPSS 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+FC T+ V + L + V + G++ Q +R N L+ ++G +ATDVAAR Sbjct: 246 AIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GID+ ++ VI+ +L + E+ +HR GRTGRA ++G++ ++ +++ + Sbjct: 306 GIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQIEKFTKSK 365 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGFLR 422 + + P+V+ I E + I + + I D K + + D E +AA ++ Sbjct: 366 IRRKEIPTVDDIYEAKYKNIEEQVKSI--ISEDNYKNFIPIATELDEEYNLVDVAAALMK 423 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 I D +F S + LS+G R Sbjct: 424 I----------------------IFDKELSFDYKENSLTVDEKDVRLFLSIGRMDNLTPR 461 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 L+ + +S + IG I + TF+ V Sbjct: 462 KLLKFISETSSVEAYEIGDIDILNKFTFINV 492 >gi|288958478|ref|YP_003448819.1| ATP-dependent RNA helicase [Azospirillum sp. B510] gi|288910786|dbj|BAI72275.1| ATP-dependent RNA helicase [Azospirillum sp. B510] Length = 521 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 182/329 (55%), Gaps = 3/329 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ ++GY T +QE + L+ +DVL AQTG+GKT +F L + S L + R A Sbjct: 15 AIEDKGYTQPTPIQEQAIPCVLQRRDVLGCAQTGTGKTASFTLPMISILASGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P +L + PTRELA QV E + +A+ IGG + + + L G +++ TPG Sbjct: 72 MPRSLILEPTRELAAQVAESFEVYGKYHKLSMALLIGGETFTEQVKKLDRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + ++ +K V+DEAD MLD+GF DIE I+ PK R+ L FSAT+ P I Sbjct: 132 RLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPKNRQTLFFSATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + D + + +A + LV D+ A+ ++L+ KNA +FC+ Sbjct: 192 RRLADAFLTDPMEITVAPPASPAETVTQALALVHEMDKRRALRHLLQTEDVKNAFIFCNR 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + ++ K L H F V AL G++ Q +R+ L+ + G + + +DVAARGID+ L Sbjct: 252 KRDIAVLQKSLERHGFNVGALHGDMVQSKRTETLERFKQGEITLLVCSDVAARGIDVQGL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG 342 V + ++ P++ +HR GRTGRAG++G Sbjct: 312 SHVFNFDVPLTPDDYVHRIGRTGRAGKQG 340 >gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM 22836] Length = 374 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/340 (36%), Positives = 187/340 (55%), Gaps = 1/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +AL E+GY T +QE + P L +D+L AQTG+GKT AF L + L Sbjct: 7 NIIEPILKALEEKGYTTPTPIQEKAIIPALTNRDILGLAQTGTGKTAAFSLPIIQQLYL- 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N AL + PTRELA+Q+ L TG+ V GGV + +L+ G Sbjct: 66 NKVSGKRREIRALILTPTRELAIQINDSLNDYTQYTGLRHCVIYGGVKQKAQTDELKTGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D I +N+ ++ VLDEAD MLD+GF DI+ +L PK+++ L F Sbjct: 126 DILVATPGRLLDLINQGFINLDSIRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +L+++ +D ++V + + I V ++ + ++N+L+ + Sbjct: 186 SATMPSTIASLSRSILRDPLKVEVTPASSVIDTIKQYLYFVEKQEKKDLLINLLKKDKKQ 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + ++L + A+ G SQ R AL + + RV IATD+AA Sbjct: 246 SVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALTNFKSQKTRVLIATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ LELVI+ +L PE +HR GRTGRAG G ++ Sbjct: 306 RGIDVDQLELVINYDLPDVPETYVHRIGRTGRAGNSGTAL 345 >gi|331005214|ref|ZP_08328607.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989] gi|330420957|gb|EGG95230.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989] Length = 462 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 197/372 (52%), Gaps = 13/372 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L Y +T +Q L P + +DV+ A+TGSGKT AFGLA+ + L + R Sbjct: 17 ENLKSLQYKEMTEIQAQSLPPMIAGQDVIAQAKTGSGKTAAFGLAMLNKLQVKRFRVQ-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +L + PTRELA QV +E+ L + V GG + L++GAHIVVGT Sbjct: 75 ----SLVLCPTRELADQVAKEIRRLGRGIHNIKVLTLCGGAPFGPQIGSLEHGAHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R L + + VLDEAD MLD+GF+ ++ I+D P KR+ L+FSAT Sbjct: 131 PGRIEEHLRKGTLRLDDVTTFVLDEADRMLDMGFQPSLDAIVDYLPAKRQTLLFSATYPE 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAI 248 I +AK + +RV + + H D AL D R A+ +L + +A+ Sbjct: 191 QIQLIAKRIMHEPIRVTVETA---HDDSSIEQHFYALEDGRSRTEALQLLLLTYRPNSAV 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+T+ LA F VAL+G++ Q+ R L + A + +ATDVAARG+ Sbjct: 248 VFCNTKRETQEVADELARMGFAAVALNGDMEQKMRDQTLVRFANNSASILVATDVAARGL 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ DL+ V + +LS + HR GRTGRAG KG + + + + E L ++ + V Sbjct: 308 DIDDLDAVFNYQLSREIDVHTHRIGRTGRAGSKGHAFTLYTSKERYKVEMLEKQLSCVVE 367 Query: 369 WEPAPSVEAIRE 380 P P+V + E Sbjct: 368 PSPLPNVSVLNE 379 >gi|329769092|ref|ZP_08260513.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325] gi|328839438|gb|EGF89015.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325] Length = 486 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 195/355 (54%), Gaps = 10/355 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE + + + E+LS+ + + T +Q + D+L AQTGSGKT AFG+ + Sbjct: 1 MTTFEELGVSREVVESLSKMNFQSPTGIQTETIPYVFSGIDILAQAQTGSGKTGAFGIPI 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + D S L +APTRELA QVG +L + G+ V++ GG S+ R+ Sbjct: 61 VDIVKRSEDLQS-------LVLAPTRELAQQVGEQLRLMARAKGLKVSIIFGGTSIERQI 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +DL+ IVVGTPGR+ DHI + L + L +VLDEADEML++GF +D+ FIL Sbjct: 114 QDLKKRPQIVVGTPGRVIDHINRRTLKLDKLTHLVLDEADEMLNMGFIEDVRFILSKITS 173 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + L+FSAT+ I L+K++ KD + S+ + DI A + +++ +V Sbjct: 174 NHQTLLFSATMPKTIMELSKDFMKDYKLIKTMSDEDLNPDIKEYATIARENEKLETLVGF 233 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L AIVF T+ V + L + L G+++Q +R L+ ++ ++ Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARGID+ D+ V + ++ + E+ HR GRTGRAG+ G++V F+ P M Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEM 348 >gi|281178534|dbj|BAI54864.1| ATP-dependent RNA helicase [Escherichia coli SE15] Length = 457 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNGLGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKECQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSIVPLEAE 381 >gi|227357070|ref|ZP_03841440.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus mirabilis ATCC 29906] gi|227162762|gb|EEI47725.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus mirabilis ATCC 29906] Length = 611 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 200/376 (53%), Gaps = 7/376 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q+ + L DVL AQTGSGKT AF L L L Sbjct: 21 ALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLLHNL------DESLK 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV +E V V + GG + R L+ G +VVGTP Sbjct: 75 APQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRALRQGPQVVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ L++S LK +VLDEADEML +GF +D+E IL P + + +FSAT+ A Sbjct: 135 GRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQTALFSATMPEA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + D V I S DI + + ++ A++ L AI+F Sbjct: 195 IRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARKNEALIRFLEAEDFDAAIIFVR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + + AL+G+++Q R L+ +++GR + IATDVAARG+D+ Sbjct: 255 TKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDILIATDVAARGLDVDR 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +S+ Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNIERTMKMSIPEVEL 374 Query: 373 PSVEAIRERDAQRILQ 388 P+ E I +R ++ Q Sbjct: 375 PNAELISQRRQEKFAQ 390 >gi|146302300|ref|YP_001196891.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium johnsoniae UW101] gi|146156718|gb|ABQ07572.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae UW101] Length = 415 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 195/345 (56%), Gaps = 2/345 (0%) Query: 3 IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FE++ + I +A+ E GY+N T +QE + L +D++ AQTG+GKT AF + + Sbjct: 2 LFEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPIIH 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L A AL + PTRELAVQ+G+ + T + GGVS + + Sbjct: 62 QLHRIVGSSKKAKQIRALIVTPTRELAVQIGQSFDTYSKYTNLTQLTIFGGVSQNPQVDA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+NG ++V TPGRL D + L+++HL +VLDEAD+MLD+GF +D++ I+ +PK R Sbjct: 122 LKNGVDVLVATPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIVKLTPKNR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ AI LA+ + +D +V ++ + +++ R V +++ N + +++ Sbjct: 182 QTLLFSATMPLAIRELAEMFLQDPEKVEVSPVSSTAENVEQRVYFVDKTEKRNLLYRLIK 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 N +VF T+ K L + A+ G+ SQ R L ++ V +A Sbjct: 242 EENLSNVLVFSRTKHGADNVVKALRKKNIPAEAIHGDKSQNARQRVLDAFKNKEVGVLVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TD+AARGID+ L VI+ +L + PE +HR GRTGRAG G+++ Sbjct: 302 TDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAI 346 >gi|312114880|ref|YP_004012476.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100] gi|311220009|gb|ADP71377.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 405 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 200/366 (54%), Gaps = 9/366 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ YV T +QE + L+ +D+L AQTG+GKT AF L L L D P + Sbjct: 18 ALADENYVEPTPIQEKAIPHLLQGRDLLGLAQTGTGKTAAFALPLLQLLSERQDSPKPRT 77 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL + PTREL +Q+ + + V +GGVS+ + + L G +V TPG Sbjct: 78 A-RALILVPTRELGLQIAASFKSYGHHLKLTSTVIMGGVSIGPQAKALSRGVDFLVATPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ +++ V+DEAD MLD+GF D+ ++ P+KR+ ++FSAT+ I Sbjct: 137 RLLDHLGQGTVDLGQTSYFVIDEADRMLDMGFIRDVRKLMKVMPRKRQSILFSATMPKEI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLA++ KD V + I ++ ID R LV ++ + +L IVF T Sbjct: 197 ATLAEDILKDPVHITIPAKTVAVERIDQRVHLVTTGNKPTMLAGLLDQPEFDRVIVFTRT 256 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + S +R + L + A+ G SQ R AL+ +R G+ARV +ATD+ ARGID+ + Sbjct: 257 KRSANRVAERLLQGGVPTEAIHGNKSQAARQKALENLRQGKARVLVATDILARGIDVDSI 316 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFREANVSVV 368 VI+ EL ++PEN +HR GRT RAG G+++ ++ RA ER F +++ V Sbjct: 317 SHVINYELPNDPENYVHRIGRTARAGSDGIAISFC--DLSERASLRNIER-FLGRSLTQV 373 Query: 369 WEPAPS 374 +PAPS Sbjct: 374 NDPAPS 379 >gi|256819312|ref|YP_003140591.1| DEAD/DEAH box helicase domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256580895|gb|ACU92030.1| DEAD/DEAH box helicase domain protein [Capnocytophaga ochracea DSM 7271] Length = 584 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGL 56 M +FE + + I +A+S+ G+ + +Q+ + P L D++ AQTG+GKT AFG Sbjct: 1 MNLFEQLGLNEPILKAISDMGFETPSEIQQKAI-PTLLANGADMVALAQTGTGKTAAFGF 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L L+ + R + L ++PTREL +Q+ EL YAK V V GG S+ Sbjct: 60 PLLQ-LIDTDSRVTQG-----LILSPTRELCLQIASELRN-YAKYLPKVNVVAVYGGASI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ GA I+V TPGR+ D IR ++ISH+ VLDEADEML++GF +DI IL Sbjct: 113 EEQARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 +P+++ +FSAT+ + +A+ + + + + + + N+ + + + +V+ R A Sbjct: 173 HTPQEKSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + + + ++VFC T+ + L E + AL G+LSQ +R ++ R + Sbjct: 233 LKRLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQ 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ++ +ATDVAARGID+ D+ VIH +L E HRSGRTGRAG+ G+S+ ++P+ Sbjct: 293 IQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPK 348 >gi|188533798|ref|YP_001907595.1| ATP-dependent RNA helicase DbpA [Erwinia tasmaniensis Et1/99] gi|188028840|emb|CAO96702.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 208/385 (54%), Gaps = 19/385 (4%) Query: 1 MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 M F + Q+ + L+E GY+ +T VQ A L L +DV A+TGSGKT AFGL Sbjct: 1 MTAFSTLTQLPASQIDNLNELGYLAMTPVQAASLPAILEGRDVRAQAKTGSGKTAAFGLG 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 + + A AL + PTRELA QV +EL L + ++ +C GG V Sbjct: 61 VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTANIKILTLC-GGQPVG 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 +R L + HIVVGTPGR+ DH++ + L + + +VLDEAD ML++GFR+DI+ I+ Sbjct: 114 AQRDSLLHAPHIVVGTPGRILDHLKRETLKLDAITTLVLDEADRMLEMGFREDIDMIISH 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRD 232 SP++R+ L+FSAT AI +++ Q+D + V E SD I+ ++ Sbjct: 174 SPQQRQTLLFSATWPQAIAHISQKIQRDPLTV----ETGDVSDLPAIEQTFYEAGAREKL 229 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 A++ +L + +VFC+T+ L L G+L Q++R L + Sbjct: 230 TALIGLLSERQPASCVVFCNTKRECDDIAYALENAQISAQPLHGDLEQRDRDQMLIRFAN 289 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 G RV +ATDVAARG+D+ L +V++ +LS +PE +HR GRT RAG++G +V ++ + Sbjct: 290 GSCRVLVATDVAARGLDIKALSMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSLVAPDE 349 Query: 353 QRRAERLFREANVSVVWEPAPSVEA 377 RA L + W P ++++ Sbjct: 350 MIRAHALEDYLQQKLAWSPVSTLKS 374 >gi|170758858|ref|YP_001787102.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A3 str. Loch Maree] gi|169405847|gb|ACA54258.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A3 str. Loch Maree] Length = 481 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 202/377 (53%), Gaps = 8/377 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN + I ++L GY N + VQ+ ++ L++KD++V ++TGSGKT AF + + Sbjct: 6 FENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + E P L + PTRELA+Q+ E+ + + G ++ ++RDL Sbjct: 66 IELEE------KEPQVLVLTPTRELALQIKEEISSIALYRRLRCTAIFGKQPMNLQKRDL 119 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + H+VVGTPGR DHI + LN+ +K VLDEADEML++GF D +E ++ PK R Sbjct: 120 KQRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRV 179 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 ++FSATI I L K Y + +NI EN I+ V D+ + I+ Sbjct: 180 TMLFSATIPEKIENLCKKYMNNPENININPENITTGTINQCYYEVEDKDKFFLLQRIIYK 239 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 N+I+FC+TR V K + + F + L G + Q++R ++ ++G + + T Sbjct: 240 EVVDNSIIFCNTRERVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKEGEFQFLVCT 299 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGI + ++ V++ E+ E+ +HR GRTGRAG++G+++ I N R + + Sbjct: 300 DVAARGIHIENISHVVNYEMPYEKESYVHRIGRTGRAGKEGVAITFIESNKVRFLKDIED 359 Query: 362 EANVSVVWEPAPSVEAI 378 + PS+E + Sbjct: 360 YIEKEIPKRKEPSLEEV 376 >gi|227328700|ref|ZP_03832724.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 434 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/356 (37%), Positives = 199/356 (55%), Gaps = 12/356 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ A L L DV A+TGSGKT AFG+ L ++ + F+ AL + P Sbjct: 1 MTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD--FTTQ----ALVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV +EL L +A+ ++ +C GG + ++ L + HIVVGTPGR+ DH+R Sbjct: 55 TRELADQVSKELRRLARFAQNIKILTLC-GGQPMGQQLDSLVHAPHIVVGTPGRIQDHLR 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 + L++ LK +VLDEAD MLD+GF D I+ ++ +P R+ L+FSAT I ++ Sbjct: 114 KQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPTDRQTLLFSATYPEEIEQISARV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+ R +A + + I+ R R ++ IL ++ + +VFC+T+ Sbjct: 174 QRQPQRFEVA-DGVEEPAIEQRFYETTKEQRLPLLIAILGHYQPASCVVFCNTKRDCQSV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 L V AL G+L Q++R L + RV +ATDVAARG+D+ +LELV++ E Sbjct: 233 FDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELELVVNFE 292 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSV 375 L+ +PE +HR GRTGRAG KG++V PQ M RA + + + W P+ + Sbjct: 293 LAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMN-RANLIEDYLGMRIKWTPSDEI 347 >gi|328958182|ref|YP_004375568.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4] gi|328674506|gb|AEB30552.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4] Length = 488 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/515 (28%), Positives = 251/515 (48%), Gaps = 68/515 (13%) Query: 2 KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K FE I I AL+ Y + T VQE ++ L KDV+V +QTGSGKTV++G+ L Sbjct: 10 KTFEEFAISDEIIAALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLC 69 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + E ++ P L + PTRELA+QV +L + V G S ++ Sbjct: 70 EKVDWEENK------PQVLVLVPTRELAIQVKEDLMNVGRLKRVKATAVYGKASFDTQKS 123 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L+ +HIVVGTPGR+ DH++ I ++ +VLDEADEML++GF D +E I++ P + Sbjct: 124 ELKQKSHIVVGTPGRVLDHLQKGTFKIEKIECLVLDEADEMLNMGFADQVEAIINFLPAE 183 Query: 180 RRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ L+FSAT+ I +A Y K D + I + I +V V ++ ++++ Sbjct: 184 RQTLLFSATMPKEIERIASFYMKPDKQSIVIETTELSKPKIIQSSVKVQEDKKEQQLLDL 243 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L A + ++FC+T+ +V+ L + + + G + Q++R + + R GR R Sbjct: 244 LTVENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYL 303 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARGID+ ++ V++ ++ E+ +HR+GRTGRAG+ GM++ ++ ++ Sbjct: 304 VATDVAARGIDIENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNE 363 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418 + A +V+ P+ ++ + EKK+ Sbjct: 364 VKEYAGQTVIEVSLPTTRLVQSHKS--------------AFEKKL--------------- 394 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 +E P+ V ++ R ++ + F G G K+K Sbjct: 395 -------------QERPPLKQVRSKELNRGITKVY---------FNG--------GKKKK 424 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 A + + + GIN IG I +Q ++T++++ Sbjct: 425 MRAVDFVGTIAKIPGINADDIGIITIQENVTYIDI 459 >gi|300721544|ref|YP_003710819.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061] gi|297628036|emb|CBJ88585.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061] Length = 649 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 166/560 (29%), Positives = 266/560 (47%), Gaps = 42/560 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY + +Q+ + L +DVL AQTGSGKT AF L L + AE Sbjct: 21 ALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFTLPLLHNINAE------LK 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV ++ V V GG + R L+ G IVVGTP Sbjct: 75 APQILVLAPTRELAVQVAEACSDFSKHMRSVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ L++S+LK +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 135 GRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEA 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + D V I S DI V ++ A+V L AI+F Sbjct: 195 IRRITRRFMNDPQEVRIQSSVTNRPDISQSYWSVYGVRKNEALVRFLEAEDFDAAIIFVR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + + AL+G+++Q R L+ +++GR + IATDVAARG+D+ Sbjct: 255 TKNATLEVAEALERNGYNSAALNGDMNQTLREQTLERLKNGRLDILIATDVAARGLDVER 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 315 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 374 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HDPEKIAAGFLRIHRA 426 P E + +R ++ + ++ + LLAK + E +AA L++ + Sbjct: 375 PDAELLGQRRLEKFAAN--VQQQLESSDLDQYRALLAKLGTDEELEMETLAAALLKMAQG 432 Query: 427 GLCAPEEITPVSLVSGRDRF--RDDSRAFKVGGGSRDNFKGS------------------ 466 P + P + R F RDD R G G RD Sbjct: 433 --ERPLILPPDPVRRPRREFNDRDDRRRNGNGFGDRDKSDRGDRGDRGDRPRRERRDVGD 490 Query: 467 -SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521 + + VG E R ++ + I+ + IG I++ + +E+ + + Sbjct: 491 MELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGELLSHF 550 Query: 522 RRTVKLDKGIQLKYLGGEKP 541 RT L+K + ++ +G +P Sbjct: 551 TRTRILNKPLNMQLMGDAQP 570 >gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4] gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4] Length = 511 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 197/366 (53%), Gaps = 10/366 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + + I +A+ + GY T +Q + L KD++ AQTG+GKT AFGL + Sbjct: 1 MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + +N A+ ++PTRELA Q E+ L V V GG + R+ Sbjct: 61 QNVDLDNPNIQ------AIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQIN 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ IVVGTPGRL DHI + + H+K +VLDEAD+MLD+GF DIE I++ +P + Sbjct: 115 ALKSHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + D +V + S+ +D + ++ + + I+ Sbjct: 175 RQTLLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRSKEFEKFDMLTRII 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 K A+VF T+ V K L + + G+L+QQ R N L RDG+ + + Sbjct: 235 DVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG G SV FV M R Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354 Query: 357 ERLFRE 362 ERL ++ Sbjct: 355 ERLTKK 360 >gi|197287236|ref|YP_002153108.1| ATP-dependent RNA helicase DeaD [Proteus mirabilis HI4320] gi|194684723|emb|CAR46715.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus mirabilis HI4320] Length = 616 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 200/376 (53%), Gaps = 7/376 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q+ + L DVL AQTGSGKT AF L L L Sbjct: 26 ALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLLHNL------DESLK 79 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV +E V V + GG + R L+ G +VVGTP Sbjct: 80 APQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRALRQGPQVVVGTP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ L++S LK +VLDEADEML +GF +D+E IL P + + +FSAT+ A Sbjct: 140 GRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQTALFSATMPEA 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + D V I S DI + + ++ A++ L AI+F Sbjct: 200 IRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARKNEALIRFLEAEDFDAAIIFVR 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + + AL+G+++Q R L+ +++GR + IATDVAARG+D+ Sbjct: 260 TKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDILIATDVAARGLDVDR 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +S+ Sbjct: 320 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNIERTMKMSIPEVEL 379 Query: 373 PSVEAIRERDAQRILQ 388 P+ E I +R ++ Q Sbjct: 380 PNAELISQRRQEKFAQ 395 >gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta] Length = 410 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/367 (32%), Positives = 208/367 (56%), Gaps = 11/367 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q+ + L+ KDV+ A+TGSGKT AF L + LL + R+ AL + PT Sbjct: 19 TRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLEQPQRY------FALILTPT 72 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142 RELA Q+ + + L + GV V +GG+ +H + L+ HI++ TPGRL DH+ K Sbjct: 73 RELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEKKPHIIIATPGRLVDHLENTK 132 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G N+ LK +V+DEAD +L++ F +++ IL P++RR L+FSAT++ + L + + Sbjct: 133 GFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLR 192 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 + VRV ++++ + + + + + +D +V+IL + ++FC T + R Sbjct: 193 NPVRVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFMIFCGTCNNTVRTAL 252 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 +L F V L G++SQ +R AL + + I+TDVA+RG+D+P +++VI+ ++ Sbjct: 253 LLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIP 312 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAIR 379 ++ ++ +HR GRT RAGR G S+ + Q + +R E+L + + + V ++ Sbjct: 313 THSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISK-QLPLYPTEEEEVMLLQ 371 Query: 380 ERDAQRI 386 ERD + I Sbjct: 372 ERDMKNI 378 >gi|209515859|ref|ZP_03264721.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] gi|209503707|gb|EEA03701.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] Length = 467 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/340 (38%), Positives = 193/340 (56%), Gaps = 8/340 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P L++ GY+ +T +Q A L L +D++ A+TGSGKT AF LAL + L A Sbjct: 16 LPPATLANLTQLGYIEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDAR- 74 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 +F A+ + PTRELA QV +E+ L A+ + V GG + + L++GA Sbjct: 75 -KFDTQ----AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ DH+ L + L +VLDEAD MLD+GF DDI + PK+R+ L+F Sbjct: 130 HVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTLLF 189 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I L++ + ++ V +A E S I R V+ +R +A+ +L ++ Sbjct: 190 SATYPEGIAKLSQQFLRNPKEVKLA-ERHDDSKIRQRFYEVSEDERLHAVGLLLNHYRPV 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + I FC+T+ VL F +AL GEL Q+ER L + V +ATDVAA Sbjct: 249 STIAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+ LE VI+ +++ +PE HR GRTGRA ++G ++ Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWAL 348 >gi|226942043|ref|YP_002797117.1| RhlE3 [Laribacter hongkongensis HLHK9] gi|226716970|gb|ACO76108.1| RhlE3 [Laribacter hongkongensis HLHK9] Length = 582 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 121/335 (36%), Positives = 184/335 (54%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T +Q + P L +D++ +AQTG+GKT F L L L A + PA Sbjct: 18 AITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLLQRLAATHPHPHPAG 77 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QVG + L + V GGV V + L I++ TPG Sbjct: 78 RPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKPQIEALTQRVDILIATPG 137 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + +++S ++ +VLDEAD MLD+GF D+ +L P +R+ L+FSAT + I Sbjct: 138 RLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLPAERQNLLFSATFNDDI 197 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + D V ++ N + + LV + + + +++ + +VF T Sbjct: 198 KALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTHLVESRQWQQVLVFTRT 257 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R +VLA+ A+ G SQ R+ AL +DG RV +ATD+AARGID+ +L Sbjct: 258 KHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLRVLVATDIAARGIDISEL 317 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G +V ++ Sbjct: 318 PQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLV 352 >gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N] gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N] Length = 477 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 195/344 (56%), Gaps = 2/344 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71 ++++E GY + T +Q + +DV+ +AQTG+GKT AF L + L+ N SP Sbjct: 28 KSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANSSASP 87 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P+ AL + PTRELA QV ++ T + AV GGV + ++ L+ G ++V Sbjct: 88 ARHPVRALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQKEALRQGCEVLVA 147 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ K +N+S + +VLDEAD MLD+GF D+E I+ P +R+ L+FSAT S Sbjct: 148 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPPQRQGLLFSATFS 207 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L ++Y V + +A+ N + A + + A+V++++ G K IVF Sbjct: 208 NEIRKLGRSYLNQPVEIEVAARNATADTVTQIAYQMTGEAKRAAVVHLVKSRGLKQVIVF 267 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +T+ +R + L + ++ G+ SQ +R AL+ + G V +ATDVAARG+D+ Sbjct: 268 SNTKIGTARLARQLELDGVKAESIHGDKSQADRMKALEAFKAGELEVLVATDVAARGLDV 327 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ +L N E+ +HR GRTGRAG G ++ + +R Sbjct: 328 AGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEER 371 >gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM 6242] gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242] Length = 463 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 194/343 (56%), Gaps = 3/343 (0%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F+N+ + + AL+E GY + T +QE + L +D++ AQTG+GKT AF L + Sbjct: 3 FDNLNLIFPLQRALTEEGYTSPTPIQELSIPHLLDNRDMIGIAQTGTGKTAAFILPILQN 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + A + + +P P L +APTRELA Q+G T V GGV + R L Sbjct: 63 MSAIHKKATPKK-PRVLVLAPTRELAAQIGESFATYGKYTRYKHTVVFGGVGQTPQVRAL 121 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G +V TPGRL D I+ + +S+++ VLDEAD MLD+GF +D+ I+D PKKR+ Sbjct: 122 SRGVDCLVATPGRLLDLIQQGHIKLSNVEYFVLDEADRMLDMGFLNDVNKIVDMLPKKRQ 181 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+SP I+TLA+ + +V + + I+ V +++ ++++LR Sbjct: 182 SLFFSATMSPEISTLARKMLSNPAQVEVTPQATTVERIEQFIFFVDSDNKNELLLHLLRG 241 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +VF T+ ++ T++L + A+ G SQ R+ LQ + G+ RV +AT Sbjct: 242 EHLDCVLVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRTKTLQNFKSGQLRVLVAT 301 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 D+AARGID+ D+ VI+ +L + PE+ +HR GRT RAG +G + Sbjct: 302 DIAARGIDIEDISHVINYDLPNIPESYVHRIGRTARAGAEGTA 344 >gi|330873852|gb|EGH08001.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963764|gb|EGH64024.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 196/359 (54%), Gaps = 12/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 19 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 76 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTLLFSATYPVGI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L++V++ EL+ + E +HR GRTGRAG G++V ++ + +RA + + W+ Sbjct: 310 ALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIEELQKAPLNWQ 368 >gi|218694919|ref|YP_002402586.1| ATP-dependent RNA helicase DbpA [Escherichia coli 55989] gi|218351651|emb|CAU97366.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli 55989] Length = 457 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL H++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 369 PPANSSILPLEAE 381 >gi|328555607|gb|AEB26099.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens TA208] gi|328913984|gb|AEB65580.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens LL3] Length = 479 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 189/340 (55%), Gaps = 7/340 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL Y T VQ ++ L++KD++V +QTGSGKT AFG+ + E ++ Sbjct: 13 IARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPICELADWEENK-- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA Q+ ++ + + G S +++ +L+ +H+V G Sbjct: 71 ----PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQKSHVVCG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI L + L VV+DEADEML++GF + +E I+ PK R ++FSAT+ Sbjct: 127 TPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L++ Y KD + + +E DI++ A D+ + + ++L + I+F Sbjct: 187 DDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRAAEEDKSSLLRDVLITENPDSCIIF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V + T L + + G + Q++R + + + G R IATDVAARGID+ Sbjct: 247 CRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGIDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 ++ LVI+ ++ E+ +HR+GRTGRAG +G ++ FV P Sbjct: 307 ENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTP 346 >gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC 49242] gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC 49242] Length = 496 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 210/375 (56%), Gaps = 12/375 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + A+ GY T +Q + P L+ +D+L AQTG+GKT AF L + S L R Sbjct: 10 QKVLAAVQASGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPMLSRLEQGRAR 69 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P L + PTRELA QV A + VA+ IGGVS + + GA ++ Sbjct: 70 ---ARVPRTLILEPTRELAAQVEESFAKYGANHKLNVALLIGGVSFGDQEAKIMRGADVL 126 Query: 129 VGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 + TPGRL D RGK L ++ ++ +V+DEAD MLD+GF DIE + P R+ L FSA Sbjct: 127 IATPGRLLDFFDRGK-LLLTGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILR-YHG 243 T+ P IT L + + + +R+ +A + S I R LVA +D+ + N++R Sbjct: 186 TMPPEITRLTEAFLHNPIRIEVARASTTASTI--RQALVASRGHADKRETLRNLIRGAEN 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAIVFC+ + V+ + L +H F AL G++ Q R +L ++G + + +DV Sbjct: 244 LKNAIVFCNRKRDVAILHRSLVKHGFPAGALHGDMDQLARMASLDAFKNGDVAILVCSDV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+PD+ V + ++ ++ E+ +HR GRTGRAGR G+++ ++ ++ + +++ Sbjct: 304 AARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGVAMTIVTEDDTKYIDQIQSLI 363 Query: 364 NVSVVWEPAPSVEAI 378 ++ WE P +A+ Sbjct: 364 GKAIEWE-GPGFDAL 377 >gi|292486843|ref|YP_003529713.1| cold-shock DEAD box protein A [Erwinia amylovora CFBP1430] gi|292900759|ref|YP_003540128.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946] gi|291200607|emb|CBJ47739.1| ATP-dependent RNA helicase (cold-shock dead-box protein) [Erwinia amylovora ATCC 49946] gi|291552260|emb|CBA19297.1| Cold-shock DEAD box protein A [Erwinia amylovora CFBP1430] gi|312170911|emb|CBX79170.1| Cold-shock DEAD box protein A [Erwinia amylovora ATCC BAA-2158] Length = 638 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 202/371 (54%), Gaps = 10/371 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E+L+ GYV + +Q + L +DVL AQTGSGKT AF L L + P Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 71 Query: 73 -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP L +APTRELAVQV + E+ G+ V GG + R L+ G +VVG Sbjct: 72 VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ L++S+L+ +VLDEADEML +GF +D+E I+ P + +FSAT+ Sbjct: 132 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI + K + KD V I S DI ++ A + +A+ L AI+F Sbjct: 192 EAIRRITKRFMKDPQEVRIQSSMTTRPDIS-QSYWTAYGRKTDALTRFLEAEDFDAAIIF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 251 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 370 Query: 371 PAPSVEAIRER 381 P+ E + +R Sbjct: 371 ELPNAELLGQR 381 >gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 481 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 144/418 (34%), Positives = 215/418 (51%), Gaps = 15/418 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ G+ T +Q + L +DV+ AQTG+GKT AFGL + L D Sbjct: 12 ILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPILQKL----DLDK 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A A+ I PTRELA+Q EL L V V GG + R+ R L+ I+VG Sbjct: 68 QEQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKKAPEILVG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K + + +K VVLDEADEMLD+GF DIE IL + + + L+FSAT+ Sbjct: 128 TPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMP 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L + + D V I ++ ID V V +++ + + ++ A+VF Sbjct: 188 KPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVF 247 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V T+ L + + G+L+Q R L+ ++G + +ATDVAARG+D+ Sbjct: 248 GRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI 307 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSV 367 + V + ++ +P++ +HR GRTGRAG+ GMSV FV P + R E L ++ + Sbjct: 308 SGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTIEDLTKKKMSPL 367 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLR 422 P +A + Q +L+ D + GD K D LL + E IAA L+ Sbjct: 368 --RPPTDAQAFAGQMKQAVLK---VDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLK 420 >gi|261339970|ref|ZP_05967828.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC 35316] gi|288317887|gb|EFC56825.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC 35316] Length = 457 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 138/381 (36%), Positives = 209/381 (54%), Gaps = 12/381 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P E L+E GY+ +T VQ A L L +DV V A+TGSGKT AFGL L + + Sbjct: 10 LPAAQLENLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQRI--DA 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 F S L + PTRELA QV EL L + ++ +C GG +R LQ+ Sbjct: 68 GLFQTQS----LVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHA 122 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HI+V TPGRL DH++ +++ L+ +V+DEAD MLD+GF D I+ ++ +P R+ L+ Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLL 182 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT AI ++ Q + + I + + + I+ + V+ + + +L H Sbjct: 183 FSATWPEAIAAISGRVQNAPLTIEIDTVDALPA-IEQQFFEVSQKGKIALLQKVLSQHKP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VFC+T+ L ++L G+L Q++R L +G ARV +ATDVA Sbjct: 242 ASCVVFCNTKKDCQSVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARG+D+ LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANILSEML 360 Query: 364 NVSVVWEPAPSVEAIRERDAQ 384 + + W AP+ +I DA+ Sbjct: 361 QLKLNWVNAPASVSIVPLDAE 381 >gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4] gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4] Length = 516 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 195/345 (56%), Gaps = 10/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + A+++ GY T +Q + P L +D+ AQTG+GKT +F L + + L R Sbjct: 3 QKVLSAVTDAGYTVPTPIQAGAIPPALMRRDICGIAQTGTGKTASFVLPMLTLLEKGRAR 62 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P L + PTRELA QV E + +A+ IGGVS + R L+ GA ++ Sbjct: 63 ---ARMPRTLIMEPTRELAAQVAENFEKYGKNHKLNIALLIGGVSFDEQDRKLERGADVL 119 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FSAT Sbjct: 120 ICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSAT 179 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGA 244 + P I LA + ++ R+ +A + + R LVA ++D + + +I+R Sbjct: 180 MPPEIQKLADKFLQNPERIEVAPPSSTAKTVTQR--LVACQNKDYEKRSTLRDIIRAQDD 237 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+N L +D + + +A+DV Sbjct: 238 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTNMLAGFKDNQITLLVASDV 297 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 298 AARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFTLV 342 >gi|257093622|ref|YP_003167263.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046146|gb|ACV35334.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 491 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 194/338 (57%), Gaps = 4/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 A++++GY T +Q + L +D++ AQTG+GKT AF L L +L + SPA Sbjct: 15 AIADQGYAEPTPIQAQAIPIVLAGQDLMGGAQTGTGKTAAFTLPLLQRILPFASASLSPA 74 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130 P+ L +APTRELA+QV + Y+K + + C+ GGV + + +++ G ++V Sbjct: 75 RHPVRVLMLAPTRELAIQVHESVRG-YSKYVPLRSACVYGGVDIKPQIAEIRLGVEVLVA 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D I + LN ++A+VLDEAD MLD+GF D+ I++ P++R+ L+FSAT S Sbjct: 134 TPGRLLDLIEQRCLNFGSVQALVLDEADRMLDMGFIPDVTRIINLLPQQRQSLLFSATFS 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA K V + +A N I +R VA + +V +LR +VF Sbjct: 194 EEIKKLADRMLKSPVLIEVARRNTVSETITHRVHPVAAEAKRALLVKLLRSSDFNQVLVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ + L ++ G+ SQQER AL+ +DG V +ATDVAARG+D+ Sbjct: 254 TRTKIETNKLARELQRAGIAADSIHGDKSQQERLKALEAFKDGSVLVLVATDVAARGLDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +L VI+ EL PE+ +HR GRTGRAG+ G +V ++ Sbjct: 314 DELPHVINFELPRTPEDYIHRIGRTGRAGKPGTAVSLV 351 >gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus acidilactici DSM 20284] gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus acidilactici DSM 20284] Length = 511 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 197/366 (53%), Gaps = 10/366 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E + + I +A+ + GY T +Q + L KD++ AQTG+GKT AFGL + Sbjct: 1 MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + +N A+ ++PTRELA Q E+ L V V GG + R+ Sbjct: 61 QNVDLDNPNIQ------AIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQIN 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++ IVVGTPGRL DHI + + H+K +VLDEAD+MLD+GF DIE I++ +P + Sbjct: 115 ALKSHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I + + D +V + S+ +D + ++ + + I+ Sbjct: 175 RQTLLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRSKEFEKFDMLTRII 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 K A+VF T+ V K L + + G+L+QQ R N L RDG+ + + Sbjct: 235 DVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG G SV FV M R Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354 Query: 357 ERLFRE 362 ERL ++ Sbjct: 355 ERLTKK 360 >gi|323185489|gb|EFZ70850.1| ATP-independent RNA helicase dbpA [Escherichia coli 1357] Length = 437 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 203/369 (55%), Gaps = 12/369 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + AL Sbjct: 2 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------AL 55 Query: 79 AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL Sbjct: 56 VLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLL 114 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI + Sbjct: 115 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRYAPASRQTLLFSATWPEAIAAI 174 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 + Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 175 SGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 233 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ LELV Sbjct: 234 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 293 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSV 375 ++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ Sbjct: 294 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPAN 352 Query: 376 EAIRERDAQ 384 +I +A+ Sbjct: 353 SSILPLEAE 361 >gi|322379432|ref|ZP_08053802.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1] gi|322380957|ref|ZP_08055023.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis HS5] gi|321146629|gb|EFX41463.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis HS5] gi|321148141|gb|EFX42671.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1] Length = 471 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 122/370 (32%), Positives = 210/370 (56%), Gaps = 9/370 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +++++ G+ + +QE + L KDV+ AQTG+GKT AF L + L +ND+ Sbjct: 31 ILKSIADAGFTGPSPIQEKAIPVILEGKDVIAQAQTGTGKTAAFALPIIQNL--QNDK-- 86 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129 + AL I PTRELA+Q+ E+ + K+ +C+ GG S+ ++ L+ +++ Sbjct: 87 ---SIEALIITPTRELAMQISDEI-FKLGKSSRTRTICVYGGQSIKKQCDLLERNPQVMI 142 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ K L + VVLDE+DEMLD+GF DDIE I + P+ ++L+FSAT+ Sbjct: 143 ATPGRLLDHLKNKRLKRFAPRVVVLDESDEMLDMGFLDDIEEIFNYLPEDAQILLFSATM 202 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LA +D V ++IA + ++DI R ++ +R+ AI+ +L +I+ Sbjct: 203 PAPIKDLANKILQDPVSIHIAPTHVTNADISQRFYVINEHERNEAIMRLLDKENHSKSII 262 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F + V + L+ ++ L G++ Q+ R +++ + A V +ATDVA+RG+D Sbjct: 263 FMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARRESIKAFKSKLADVLVATDVASRGLD 322 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + D+ V + L N E+ +HR GRTGRAG+KG+++ ++ + +R+ ++ S+ Sbjct: 323 ISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKELQRMQKDIGSSIEL 382 Query: 370 EPAPSVEAIR 379 P++ R Sbjct: 383 YEIPNMNEDR 392 >gi|206576701|ref|YP_002238858.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342] gi|206565759|gb|ACI07535.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342] Length = 457 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 205/366 (56%), Gaps = 10/366 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+++T VQ A L L KDV V A+TGSGKT AFGL L + + RF S Sbjct: 18 LNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV EL L + + + GG +R LQ+ HI+V TPG Sbjct: 75 ---LVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ +++ L+ +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++ Q++ + I + + + I+ + V+ + + ++L H + +VFC+T Sbjct: 192 AAISGRVQRNPQTIEIDTVDALPA-IEQQFFEVSRHGKIALLQHLLSQHQPASCVVFCNT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L ++L G+L Q++R L +G RV +ATDVAARG+D+ L Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372 LV++ EL+ +PE +HR GRT RAG +G+++ F P+ Q RA L +S+ W PA Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369 Query: 373 PSVEAI 378 P+ I Sbjct: 370 PTGNTI 375 >gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida GA99-3549] gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549] Length = 569 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 196/343 (57%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + LA D Sbjct: 16 QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + E + CI GG + R L+ G Sbjct: 76 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD++F+L ++ + L+FS Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S T L ++V A++G++ Q +R + R ++ + +ATDV AR Sbjct: 251 VIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353 >gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36] gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36] Length = 559 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 196/354 (55%), Gaps = 14/354 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + P L KDVL AQTG+GKT +F L + TLLA Sbjct: 31 PKVL-KAIDEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMI-TLLARG- 87 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 88 -RARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQDKLIDKGVDV 146 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L +S +K +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 147 LIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLFFSA 206 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-------ILR 240 T++P I + + R+ +A + +I+ ++ S +D ++ Sbjct: 207 TMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKRKVLRALID 266 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAI+FC+ + V K L ++ + + G+L Q +R+ L+ R+G R Sbjct: 267 AEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDLRFL 326 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351 +A+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++ Sbjct: 327 VASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRD 380 >gi|308050678|ref|YP_003914244.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799] gi|307632868|gb|ADN77170.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799] Length = 649 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/352 (37%), Positives = 197/352 (55%), Gaps = 12/352 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65 +P+ + ALS G+ + T +Q + L D+L A TG+GKT AFGL ALA Sbjct: 12 LPESLLSALSAMGFTSPTPIQAQAIPFMLDGHDILGEAATGTGKTAAFGLPALAG----- 66 Query: 66 NDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123 P A L +APTRELA+QV LE G+ V GG + RDL+ Sbjct: 67 ---IDPRQRAAQMLVLAPTRELAIQVATALEEFAVNMKGMRVTTLYGGQPYGPQLRDLER 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VV TPGRL DHIR + + ++ VLDEADEML++GF +DIE+IL+ P + +M Sbjct: 124 GTQVVVATPGRLMDHIRRGSIELDSIQCCVLDEADEMLNMGFLEDIEWILEHLPDQTQMA 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I +A+ + KD V IAS+ Q ++I +A V+ ++ A+ + Sbjct: 184 LFSATMPNQIRRIAERFLKDPKHVKIASDRTQKANIVQKAWKVSGLNKLTALERLSETLD 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF TR L F+ AL+G++SQQ+R + + + G+ + IATDV Sbjct: 244 YDAMIVFVRTRNDTMELANHLNNMGFKAAALNGDMSQQQREHTVAQLHKGKINILIATDV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ARG+D+P + V++ +L + E+ +HR GRTGRAGR G ++ F P+ +++ Sbjct: 304 VARGLDVPRITHVLNFDLPMDSESYVHRIGRTGRAGRSGEAILFARPRELRQ 355 >gi|261345155|ref|ZP_05972799.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541] gi|282566845|gb|EFB72380.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541] Length = 660 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 143/424 (33%), Positives = 220/424 (51%), Gaps = 23/424 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ALS+ GY + +Q+ + L DVL AQTGSGKT AFGL L + + Sbjct: 18 ILNALSDLGYEKPSPIQQQCIPLLLNGNDVLGMAQTGSGKTAAFGLPLLHNIDPD----- 72 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV L ++ V V GG + R L+ G +VV Sbjct: 73 -LKAPQILVLAPTRELAVQVAEALSDFSKHMNRVNVVALYGGQRYDVQLRALRQGPQVVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S LK +VLDEADEML +GF DD+E I+ P + + +FSAT+ Sbjct: 132 GTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIDDVENIMSQIPAQHQTALFSATM 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I + + + KD + I S DI V+ ++ A+V L AI+ Sbjct: 192 PEPIRRITRRFMKDPKEIRIQSSITTRPDIAQSYWTVSGMRKNEALVRFLESEDFDAAII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ +++GR + IATDVAARG+D Sbjct: 252 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 312 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 371 Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419 P+ E + +R A ++ Q ++ + + LLAK P E +AA Sbjct: 372 VDLPNAELLSQRRQAQFAAKVQQ------QLESSDLDLYRSLLAKVSPSEDVDMETLAAA 425 Query: 420 FLRI 423 L++ Sbjct: 426 LLKM 429 >gi|237653132|ref|YP_002889446.1| DEAD/DEAH box helicase [Thauera sp. MZ1T] gi|237624379|gb|ACR01069.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T] Length = 487 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 144/411 (35%), Positives = 216/411 (52%), Gaps = 19/411 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F+ +P + + L + Y +T +Q A L L D++ A+TGSGKT AF L L + Sbjct: 32 FDGLPLSPAMLDTLRQLDYRAMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFALPLLAR 91 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERR 119 L A A+ + PTRELA QV +E+ L + V+A+C GG + +R Sbjct: 92 LDVRK------LAVQAMVLCPTRELADQVTQEIRRLARFEANIKVLALC-GGTPMRPQRD 144 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L++GAH+VVGTPGR+ DH+ L + L +VLDEAD MLD+GF DDI F+ P + Sbjct: 145 SLEHGAHVVVGTPGRIMDHLERGSLVLEALNTLVLDEADRMLDMGFHDDIAFVASRCPSE 204 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT I LA + ++ V + E H I R VA R A+ +L Sbjct: 205 RQTLLFSATYPEGIARLAARFLREPQEVKLL-EQHAHGKIRQRFYEVAHPARLEAVATLL 263 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R+ + + FC+TR ++L F +AL+GE+ Q+ER L + V + Sbjct: 264 RHFRPVSTLAFCNTRQQCRDLVELLRARGFAALALNGEMEQRERDQVLIQFANRSCSVLV 323 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARG+D+ LE VI+ +++ +PE +HR GRTGR +G ++ + +RR + Sbjct: 324 ATDVAARGLDIARLEAVINVDVTPDPEIHIHRIGRTGRGDEEGWALNLCSSADKRRVASI 383 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVL 407 + W +++ + E DA LQ P+ I G D+ + DVL Sbjct: 384 AQRMGFEPEWH---ALDELVE-DANEPLQAPMTTLLILGGRKDKIRPADVL 430 >gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans DS-1] Length = 448 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/332 (39%), Positives = 189/332 (56%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ Y N T +Q + L +D+L AQTG+GKT AF L + L A N++ P Sbjct: 18 ALAANNYTNPTPIQAQAIPALLEGRDLLGLAQTGTGKTAAFALPILQILAAANEKRQPKE 77 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL +APTRELAVQ+ + +E + V GGV+ R+ + + G IVV TPG Sbjct: 78 A-RALILAPTRELAVQISQSIESYGKNFKLRHTVIFGGVNQFRQVKAMTAGVDIVVATPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + K +N+S +VLDEAD MLD+GF D+ I+ + P++R+ L+FSAT+ +I Sbjct: 137 RLLDLMNQKHVNLSRTSLLVLDEADRMLDMGFIRDVRKIIAAMPRQRQSLLFSATMPSSI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA ++ VRV + E ID R + V + + +L IVF T Sbjct: 197 QHLADEILREPVRVEVTPEVVTVDKIDQRVLHVDGKRKRELLAKLLDNSELSRVIVFTRT 256 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R ++ L + A+ G SQ R AL M R+G+ARV +ATD+AARGID+ D+ Sbjct: 257 KHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDMFRNGKARVLVATDIAARGIDVSDI 316 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VI+ EL + PE+ +HR GRT RAG+ G+++ Sbjct: 317 THVINYELPNEPESYVHRIGRTARAGKSGIAL 348 >gi|323357599|ref|YP_004223995.1| superfamily II DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323273970|dbj|BAJ74115.1| superfamily II DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 746 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 198/364 (54%), Gaps = 4/364 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDR 68 I AL+ G + +Q A + P L +DVL +TGSGKT+AFG L +L R Sbjct: 365 IVRALAALGAASPFPIQAATVKPILEGRDVLARGRTGSGKTIAFGAPLVERILRAQAGQR 424 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AP AL +APTRELA+Q+ R ++ + G+ GGV R+ L+ G I+ Sbjct: 425 REFGRAPKALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQARQVGALKKGVDII 484 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 +GTPGR+ D ++ L++S ++ VLDE D M +LGF + ++ IL ++ + L+FSAT Sbjct: 485 IGTPGRIEDLLKQGKLDLSQVQVTVLDEGDHMCELGFLEPVQRILRATADGSQKLLFSAT 544 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + L + + +A E++ I++R +++ D+ + +++ G + Sbjct: 545 LDREVAALVDEFLVEPAVYEVAGEDQDSGTIEHRVLVIEHRDKAQILDSLVDRDG--KTL 602 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF TRA + E VAL G+L+QQ+R+ L+ + GR V +ATDVAARGI Sbjct: 603 VFARTRAYAEMLAEQFDEAGIAAVALHGDLNQQKRTRNLEKLTSGRVNVLVATDVAARGI 662 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 + D++LVI A+ + LHRSGRTGRAGR G V +I + QRR L A + Sbjct: 663 HVDDIDLVIQADAPDEYKTYLHRSGRTGRAGRSGTVVTLITRQRQRRMTELLDRAEIDAP 722 Query: 369 WEPA 372 +E A Sbjct: 723 FESA 726 >gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003] gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003] Length = 448 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 195/356 (54%), Gaps = 6/356 (1%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 M+ FEN+ P ++ + L+ G T +Q + +R +D+L AQTG+GKT AFGL Sbjct: 1 METFENLGLAPMLL-KNLAGLGLTKPTPIQAQGIPHIVRGRDILGLAQTGTGKTAAFGLP 59 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 + + +LA R +P + AL +APTRELA Q+ L V + +GG S++ + Sbjct: 60 MLTRILAYGKRPAPKTV-RALVLAPTRELATQIHDNLAAYAEGAPVRIQRVVGGASLNVQ 118 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 L G +++ TPGRL D I + L +S K +VLDEAD+MLD+GF + I P Sbjct: 119 AEKLSKGCDVLIATPGRLIDLIERRALVLSETKYLVLDEADQMLDIGFIHALRRIAKLIP 178 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 +R+ L+FSAT+ + LA +Y D +RV +A+ + ID ++ + Sbjct: 179 AERQTLLFSATMPKLMEELAASYLSDPIRVEVATPGKAAEKIDQGVHFTTQGEKAALLAE 238 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + H + A+VF T+ + TK+L + F V A+ G SQ +R AL R +V Sbjct: 239 YISRHPGELAVVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQV 298 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARG+D+P + V + +L + PEN +HR GRT RAGR G +V F P M Sbjct: 299 LVATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCGPLEM 354 >gi|212704221|ref|ZP_03312349.1| hypothetical protein DESPIG_02276 [Desulfovibrio piger ATCC 29098] gi|212672425|gb|EEB32908.1| hypothetical protein DESPIG_02276 [Desulfovibrio piger ATCC 29098] Length = 578 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 200/376 (53%), Gaps = 7/376 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E +P+ I A G+ +L VQ L L +D++V ++TGSGKT + L L L Sbjct: 57 LETLPETIAAACGRAGWTSLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPLVPRLD 116 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E A AL + PTRELAVQV E L+ TG+ GGV ++ L++ Sbjct: 117 PE------LHAVQALILVPTRELAVQVEHEARTLFEGTGIRPVAVYGGVGYKKQMDALRD 170 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RM 182 GA +VVGTPGR+ DH+ + L++ L +V DEAD ML +GF D++ + P++R Sbjct: 171 GAQLVVGTPGRVLDHLLRRTLSLEDLDVLVFDEADRMLSIGFYPDMKEVQRYLPRRRIHT 230 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 MFSAT P + LA + + ++++ + +++ + D+D +V +L Sbjct: 231 SMFSATYPPHVLKLAGEFLTEPSMLSLSQKEVHVAEVQHLFCQSRPMDKDRVLVRLLETE 290 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +AI+FC+T+A+V T VL + LS +LSQ R L +R G + +ATD Sbjct: 291 NPASAIIFCNTKANVHYITGVLQGFGYNADELSADLSQARREAVLDKIRQGSLQYLVATD 350 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+P L V E + E+ +HR+GRTGRAG G + ++ + ER+ R Sbjct: 351 VAARGIDIPALSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDIMQRMELERIARH 410 Query: 363 ANVSVVWEPAPSVEAI 378 +++ PAP+ E + Sbjct: 411 YKIALREIPAPTDEDV 426 >gi|78779495|ref|YP_397607.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312] gi|78712994|gb|ABB50171.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. MIT 9312] Length = 593 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 157/540 (29%), Positives = 260/540 (48%), Gaps = 54/540 (10%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +LS +GY N T +Q+A + + +D+L AQTG+GKT AF L L L A+N Sbjct: 60 QSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL-ADNKE 118 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 + L + PTRELA QV + +++ + I GG + L+ + Sbjct: 119 LNAK----VLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKRKVDV 174 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DHIR ++ + +VLDEADEML++GF +DIE+I+D PK ++M++FSA Sbjct: 175 VVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLFSA 234 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I +AK Y D + I S ++ I + + V + +A+ IL + + Sbjct: 235 TMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGV 293 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + + L V L+G++ Q +R N + ++ G + +ATDVAARG Sbjct: 294 IIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARG 353 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ ++LV++ + + E HR GRTGRAGR G ++ + + L + Sbjct: 354 LDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLENSTRTKI 413 Query: 368 VWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDV---LLAKH--DPEKIAA 418 PS + I E+ ++++++ L + + ++ ++DV L KH D IA Sbjct: 414 EEINIPSNKIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKEKHSMDDSNIA- 472 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRF---RDDSRAFKVGGGS---------------- 459 + ++LV G F DDS K Sbjct: 473 ---------------MAAINLVIGNKAFFVNEDDSWIHKQNNTDRNRSNRNGNNRMRNSN 517 Query: 460 -RDNFKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 R+NF+ S+ + G ++ +C S+ IN +SIG I++ D + V++ D Sbjct: 518 RRNNFQNDSFETYKFDFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRD 577 >gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB 8327] Length = 647 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 129/342 (37%), Positives = 190/342 (55%), Gaps = 12/342 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71 +AL GY T +Q + L +DVL AQTG+GKT AF L S + L+ +D Sbjct: 30 QALEAVGYETPTPIQANTIPLLLEGRDVLGQAQTGTGKTAAFALPTLSNIDLSLSD---- 85 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L +APTRELA+QV YA+ V GG + R L+ G H+VV Sbjct: 86 ---PQVLVLAPTRELAIQVAEAFH-TYAEFMPDFHVLPIYGGQDYGVQIRMLKRGVHVVV 141 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+R LN+ LK +VLDEADEML +GF DD+E+ILD +P+ R++ +FSAT+ Sbjct: 142 GTPGRVMDHMRKGTLNLDGLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQVALFSATM 201 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +A+ Y K + I ++ I R +V + +A+ IL I+ Sbjct: 202 PQPILRIARKYLKAPAEITIQAKTTTVETIRQRYWMVGGHHKLDALTRILEVEPFDGIII 261 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + L + AL+G++ Q R ++ ++DG + IATDVAARG+D Sbjct: 262 FVRTKTETVNLAEKLQARGYLAAALNGDMVQSARERTIEQLKDGTLNIVIATDVAARGLD 321 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + + VI+ ++ ++ E+ +HR GRTGRAGR G ++ FV P+ Sbjct: 322 VDRISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPR 363 >gi|294634522|ref|ZP_06713057.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685] gi|291092036|gb|EFE24597.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685] Length = 643 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 146/425 (34%), Positives = 226/425 (53%), Gaps = 25/425 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q A + L +DVL AQTGSGKT AF L L + + Sbjct: 22 IIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNI-------D 74 Query: 71 PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AP L +APTRELAVQV + ++ G+ V GG + R L+ G IV Sbjct: 75 PSLKAPQVLVLAPTRELAVQVAEAMTDFSKHLHGINVVALYGGQRYDVQLRALRQGPQIV 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL DH++ L+++ L+ +VLDEADEML +GF +D+E I+ P + + +FSAT Sbjct: 135 VGTPGRLLDHLKRGTLSLASLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI + + + + V I S DI V ++ A+V L AI Sbjct: 195 MPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFLEAEDFDAAI 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 255 IFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 315 DVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIERTMKLTIP 374 Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAA 418 P+ E + R A R+ Q L+S D+ + LLAK PE+ +AA Sbjct: 375 EVELPNAELLGTRRLAKFAARVQQQ---LESSDLDQYR---ALLAKLQPEEEQDMETLAA 428 Query: 419 GFLRI 423 L++ Sbjct: 429 ALLKM 433 >gi|222109707|ref|YP_002551971.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus TPSY] gi|221729151|gb|ACM31971.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY] Length = 469 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 189/336 (56%), Gaps = 10/336 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73 L + GY +T +Q A L L+ +D++ A TGSGKT AFGLA+ DR +P Sbjct: 29 LQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMV-------DRLNPRWF 81 Query: 74 APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A L + PTRELA QV E+ L A+ + V GGV + L+NGAHIVVGTP Sbjct: 82 AVQGLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIASLENGAHIVVGTP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L+I+ LK +VLDEAD MLD+GF DIE ++ P +R+ L+FSAT Sbjct: 142 GRVMDLMERGKLDIAKLKTLVLDEADRMLDMGFLADIETVVRQCPAERQTLLFSATYPDG 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ + + V +A+++ I R V ++ + + +L + ++I FC+ Sbjct: 202 IAGLAQRFMRAPQMVKVAAQH-GAGKIAQRWYEVDAREKVDVVARMLAHFRPASSIAFCN 260 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L F +AL GEL Q+ER L + V +ATDVAARGID+ D Sbjct: 261 TKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAARGIDIAD 320 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L VI+ +++ +PE +HR GRTGR +G+++ ++ Sbjct: 321 LSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLV 356 >gi|168178014|ref|ZP_02612678.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916] gi|182671239|gb|EDT83213.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916] Length = 425 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 127/346 (36%), Positives = 196/346 (56%), Gaps = 4/346 (1%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I +AL E GY T +QE + L KD++ AQTG+GKT AF + + Sbjct: 2 LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L +++ + + P+ AL +APTRELA+Q+G E + AV GGVS + + + Sbjct: 62 NL-SKDKKANKNPKPIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G I++ TPGR+ D K +++ +++ VLDEAD MLD+G D++ I+ PK Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKI 180 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ IT L + KD +RV + + I V + + + ++L Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLL 240 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++A+VF +T+ + K L E + A+ G SQ R AL ++G+ RV + Sbjct: 241 RDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLV 300 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATD+AARGID+ +L V + L PE +HR GRTGRAG KG+++ Sbjct: 301 ATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346 >gi|149197292|ref|ZP_01874344.1| ATP-dependent RNA helicase, specific for 23S rRNA [Lentisphaera araneosa HTCC2155] gi|149139838|gb|EDM28239.1| ATP-dependent RNA helicase, specific for 23S rRNA [Lentisphaera araneosa HTCC2155] Length = 462 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 205/364 (56%), Gaps = 8/364 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY +T +QE L L KD++ A+TG+GKT AFGL + S L+ ++ R L Sbjct: 23 GYEEMTEIQELSLPAILDGKDLIAQAKTGTGKTAAFGLGVLSKLVLDDYRIQ------VL 76 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR-ERRDLQNGAHIVVGTPGRLCD 137 + PTREL QV + + L + + +GG R + + + +GAHIVVGTPGR+ Sbjct: 77 ILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGMPFRPQMKSVAHGAHIVVGTPGRILK 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+ L++ H++ +VLDEAD MLD+GF+D+I+ I+D + K+R+ L+FSAT I T+A Sbjct: 137 HLNKSSLSLDHVRTLVLDEADRMLDMGFQDEIDAIIDQTNKQRQTLLFSATYPKKIATIA 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 K KD +R+ + S+ + S I+ V + S R + +L +++A+VFC+T+ Sbjct: 197 KRVMKDPLRIELDSQVHEESTIEQHFYKVTSESQRLLGLQLLLDKFKSESAVVFCNTKQE 256 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 K L++ F +AL G+L Q++R L + V +ATDVAARG+D+ ++LV Sbjct: 257 AKDICKDLSKVGFSTLALHGDLEQKDRQENLVRFANKSVAVLVATDVAARGLDIDSIDLV 316 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376 I+ +S + E +HR GRTGRAG+ G++ + Q + L + E P Sbjct: 317 INYHISRDFEVHVHRIGRTGRAGKNGIACSLHSQKEAHKISLLQEFLGQEIESETLPDRS 376 Query: 377 AIRE 380 ++E Sbjct: 377 VLKE 380 >gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus amyloliquefaciens TA208] Length = 494 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/397 (32%), Positives = 218/397 (54%), Gaps = 27/397 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++++ G+ T +Q + L KDV+ AQTG+GKT AFG+ L ++ +P Sbjct: 16 KSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-------EKMNPE 68 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S + A+ IAPTRELA+QV EL + V GG + R+ R L+ HI+VGT Sbjct: 69 SPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI + + ++++ VV+DEADEML++GF DDIE IL + P + + L+FSAT+ Sbjct: 129 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPA 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + V + ++ S+I + V + + + +L + AIVF Sbjct: 189 PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFG 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + L + + G+L+Q +R AL+ ++G V +ATDVAARG+D+ Sbjct: 249 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V + ++ +PE+ +HR GRTGRAG+ GM++ F+ P R + + R Sbjct: 309 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR--------- 354 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 ++E +R R +++P ++++G ++ VD L Sbjct: 355 ---AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVDRL 387 >gi|324113196|gb|EGC07171.1| DEAD/DEAH box helicase [Escherichia fergusonii B253] Length = 463 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 204/367 (55%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KD+ V A+TGSGKT AFGL L + A + Sbjct: 24 LNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHIDATLFQTQ---- 79 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 80 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGIQRDSLQHAPHIIVATP 136 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 137 GRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEA 196 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + ++ + S + + + +L + + +VFC+ Sbjct: 197 IAAISGRVQRDPLTIEIDSTDAL-PPVEQHFYETSSSGKISLLQRLLSVYQPSSCVVFCN 255 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + +AL G+L Q++R L +G R+ +ATDVAARG+D+ Sbjct: 256 TKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARGLDIKS 315 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG+ G+++ F P+ Q RA + + + W+ Sbjct: 316 LELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQ-RANIISDMLQLKLNWQM 374 Query: 372 APSVEAI 378 P+V I Sbjct: 375 PPAVTTI 381 >gi|321313476|ref|YP_004205763.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5] gi|320019750|gb|ADV94736.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5] Length = 479 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 121/347 (34%), Positives = 196/347 (56%), Gaps = 8/347 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F+N I I AL GY T VQ++++ L KD++V +QTGSGKT +FG+ L Sbjct: 1 MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 LA D + P AL + PTRELAVQV ++ + + G S +++ Sbjct: 61 CE--LANWDE----NKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +L+ +HIVVGTPGR+ DHI L + L +V+DEADEML++GF + +E I+ P Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R ++FSAT+ I L++ Y + + I + +I++ + V ++ + + ++ Sbjct: 175 ERTTMLFSATLPQDIEKLSRQYMQKPEHIEIKAAGLTTRNIEHAVIQVREENKFSLLKDV 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + I+FC T+ V++ T L + + + G + Q++R + + + G R Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARGID+ ++ LVI+ +L E+ +HR+GRTGRAG KG ++ Sbjct: 295 VATDVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAI 341 >gi|319783267|ref|YP_004142743.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169155|gb|ADV12693.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 520 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 203/366 (55%), Gaps = 8/366 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+++ GY T +Q + L KD+L AQTG+GKT +F L + + L EN Sbjct: 10 PKVLS-AVTDAGYTQPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPMLTRL--ENG 66 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R + A P L + PTRELA QV + +A+ IGGVS + + L+ G + Sbjct: 67 R-ARARMPRTLILEPTRELAAQVEENFIRYGKNHKLNIALLIGGVSFDEQNKKLERGVDV 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I + P R+ L FSA Sbjct: 126 LIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQTLFFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA- 244 T+ P IT L + + VRV ++ ++I R V D+ + N+++ A Sbjct: 186 TMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIKAEDAE 245 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + VS + L ++ F AL G++ Q+ R L RDG+ R +A+DV Sbjct: 246 LKNAIIFCNRKIEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYLVASDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G S + ++ + + + R Sbjct: 306 AARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDAIERLI 365 Query: 364 NVSVVW 369 + W Sbjct: 366 GNKIEW 371 >gi|238783510|ref|ZP_04627532.1| DEAD/DEAH box helicase domain protein [Yersinia bercovieri ATCC 43970] gi|238715565|gb|EEQ07555.1| DEAD/DEAH box helicase domain protein [Yersinia bercovieri ATCC 43970] Length = 612 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 167/539 (30%), Positives = 257/539 (47%), Gaps = 47/539 (8%) Query: 44 AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TG 102 AQTGSGKT AFGL L + AE AP L +APTRELA+QV L G Sbjct: 2 AQTGSGKTAAFGLPLLHNIKAE------LKAPQVLVLAPTRELAIQVAEALSSFSKDING 55 Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162 V V GG + R L+ G IVVGTPGRL DH++ LN+S+L +VLDEADEML Sbjct: 56 VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLR 115 Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222 +GF +D+E I+ P + + +FSAT+ AI + + + KD V I S DI Sbjct: 116 MGFIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQS 175 Query: 223 AVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281 V ++ A+V L AI+F T+ + + L + AL+G+++Q Sbjct: 176 FWRVGGGYNKKEALVRFLESEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQS 235 Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341 R L ++DGR + IATDVAARG+D+ + LV++ ++ + E+ +HR GRTGRAGR Sbjct: 236 LREQTLDRLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295 Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDE 400 G ++ + +R + + R +++ P+ E + ER R+ Q + ++ + Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVQLPNAELLGER---RLAQFAAKVGQQLESSD 352 Query: 401 KKMVDVLLAKHDPEK------IAAGFLRI---HRAGLCAPEEI-TPVSLVSGRDRFRDD- 449 + LLAK PE+ +AA L++ R + PE P + RD +D Sbjct: 353 LDLYRALLAKLQPEEEFDLETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGNDR 412 Query: 450 --------------SRAFKVGGGSRD------NFKGSSWFSLSVGSKQKAEARWLMPMLC 489 RA GG R + + + VG E R ++ + Sbjct: 413 GNDRGRDRGDSRREPRADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIA 472 Query: 490 RSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 I+ + IG I++ + +E+ + + RT L+K + ++ LG +P R Sbjct: 473 NEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 531 >gi|256831112|ref|YP_003159840.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256580288|gb|ACU91424.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum DSM 4028] Length = 741 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 207/381 (54%), Gaps = 8/381 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++PQ + A + + L VQ + L +DV+V +QTGSGKT AF LL Sbjct: 29 DLPQTLQAAATRLNWAELMPVQVQTIPYMLGGQDVMVQSQTGSGKTGAF-------LLPI 81 Query: 66 NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 DR AP AL + PTRELAVQV R+ E L + G+ GGV + + L++G Sbjct: 82 LDRIETGLGAPQALVLVPTRELAVQVTRDAEELGREAGIKPLSIYGGVGYKGQIQGLEDG 141 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +++GTPGR+ DH+ LN+ LK +V DEAD ML +GF D++ + P+ + M Sbjct: 142 AQLIIGTPGRILDHLLKGNLNLDRLKILVFDEADRMLSMGFYPDMKQLQRYLPRGLQSAM 201 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT + LA+ + KD V V+++ SD+ + V + +V I+ Sbjct: 202 FSATYPGHVKRLAQQFLKDPVFVSLSQSQVHVSDVLHVVYKVPAMQKSRILVKIIEQENP 261 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +AI+FC+T+A V + VL + V +S +L+Q R L+ +R + + +ATDVA Sbjct: 262 ASAIIFCNTKADVHFVSTVLRRFGYDVGEISADLTQAAREEVLEKLRLNKLKFLVATDVA 321 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ +L V + + E +HR+GRTGRAG G+++ + + E++ ++ + Sbjct: 322 ARGIDIHELSHVFQYQPPQDHEAYVHRTGRTGRAGAAGVAISFVSGMEEIELEQIAKKFS 381 Query: 365 VSVVWEPAPSVEAIRERDAQR 385 + +V +P P+ E + +QR Sbjct: 382 IPMVEQPLPADEELETLISQR 402 >gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 505 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/345 (37%), Positives = 189/345 (54%), Gaps = 10/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + A+++ GY T +Q + L +D+ AQTG+GKT +F L + S L R Sbjct: 11 QKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRAR 70 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P L + PTRELA QV E + VA+ IGGVS + R L+ GA ++ Sbjct: 71 ---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGADVL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH L +S ++ +V+DEAD MLD+GF DIE I P R+ L FSAT Sbjct: 128 ICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHG 243 + P I LA + ++ R+ +A + R VA +D +LR Sbjct: 188 MPPEIQKLADRFLQNPERIEVAKPASAAKTVTQR--FVASHSKDYEKRAVLRELVRAQTE 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG ++ +A+DV Sbjct: 246 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G S ++ Sbjct: 306 AARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASFTLV 350 >gi|296104876|ref|YP_003615022.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059335|gb|ADF64073.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 631 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 202/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + + Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPD----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 72 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 AELPNAELLGKR 382 >gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500] Length = 443 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 192/344 (55%), Gaps = 8/344 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQ++ EA + G+ N T +Q + L KD++ AQTGSGKT AF + + LLA+ Sbjct: 22 PQIV-EACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKTAAFSIPMLQALLAK-- 78 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 S L +APTRELAVQ+ ++E L A GV AV +GG+ + L HI Sbjct: 79 ----PSGLFGLVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALAKKPHI 134 Query: 128 VVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VGTPGR+ H+ KG N+ LK V+DEAD +L + F ++I IL PK R +FS Sbjct: 135 IVGTPGRVVYHLENTKGFNLKTLKYFVMDEADRLLGMDFEEEINTILKVIPKDRNTFLFS 194 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT++ + L + D V++ +A++ + + + ++ + IL + Sbjct: 195 ATMTSKVAKLQRASLNDPVKIQVATKYSTVDTLQQEYIFIPYKHKECYLTYILNELAGNS 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F ST A+ ++ +L F+ + ++G++ Q +R ++L + + +ATDVAAR Sbjct: 255 VIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMDILVATDVAAR 314 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 G+D+P ++LVI+ ++ + + +HR GRT RAGR G +V ++ Q Sbjct: 315 GLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQ 358 >gi|227832522|ref|YP_002834229.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|262183610|ref|ZP_06043031.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|227453538|gb|ACP32291.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC 700975] Length = 462 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/343 (37%), Positives = 189/343 (55%), Gaps = 7/343 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL++ G ++QE L L +D++ A+TG GKT FG+ L + + D Sbjct: 25 ICDALADNGITRTFAIQELTLPIALNGQDLIGQARTGMGKTYGFGVPLLDRVFDDADIPE 84 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL IAPTRELA+QV +LE A + V GG + +++GA +VVG Sbjct: 85 LDGTPRALVIAPTRELAIQVSGDLELAAANLPLSVVTLCGGRPYEEQITQIESGADVVVG 144 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRMLMFSA 187 TPGRL D + K L+ H+ +VLDEADEMLDLGF DIE IL +P + ++FSA Sbjct: 145 TPGRLLDLCQKKHLSFDHVSVLVLDEADEMLDLGFLPDIEKILSLLHGNPHQ--TMLFSA 202 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGAK 245 T+ I TLA+ + + V + S + QH+ R V D V L+ G Sbjct: 203 TMPGPIVTLARTFLEKPVHIRAESGDAQHTHSSTRKVTFQAHRMDKIAVLGKALQAEGRG 262 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ S + + LA+ F+V A+ G+L Q+ R +L R+G + +ATDVAA Sbjct: 263 RTIIFTRTKRSAAAVAEELAQRGFRVGAVHGDLDQKARERSLNTFREGTVEILVATDVAA 322 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ D+ VI+ ++ +P +HR GRTGRAG G +V ++ Sbjct: 323 RGIDIEDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLV 365 >gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus amyloliquefaciens LL3] Length = 480 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/397 (32%), Positives = 218/397 (54%), Gaps = 27/397 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++++ G+ T +Q + L KDV+ AQTG+GKT AFG+ L ++ +P Sbjct: 2 KSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-------EKMNPE 54 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S + A+ IAPTRELA+QV EL + V GG + R+ R L+ HI+VGT Sbjct: 55 SPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 114 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI + + ++++ VV+DEADEML++GF DDIE IL + P + + L+FSAT+ Sbjct: 115 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPA 174 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + V + ++ S+I + V + + + +L + AIVF Sbjct: 175 PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFG 234 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + L + + G+L+Q +R AL+ ++G V +ATDVAARG+D+ Sbjct: 235 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 294 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V + ++ +PE+ +HR GRTGRAG+ GM++ F+ P R + + R Sbjct: 295 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR--------- 340 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 ++E +R R +++P ++++G ++ VD L Sbjct: 341 ---AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVDRL 373 >gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp. AL212] gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212] Length = 476 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 121/334 (36%), Positives = 189/334 (56%), Gaps = 2/334 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72 A+SE+GY N T +Q+ + L+ DV+ AQTG+GKT F L + L + N SPA Sbjct: 19 AISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPMLQKLESHANSSTSPA 78 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL + PTRELA+QV + + AV GV++ + +++G I+V T Sbjct: 79 KHPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVNIDVQIAAIRSGVEILVAT 138 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K L +S ++ ++LDEAD MLD+GF DI+ I+ P +R+ LMFSAT S Sbjct: 139 PGRLLDHLQQKNLILSKIEILILDEADRMLDMGFLPDIKQIIQMLPDQRQNLMFSATFSE 198 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA K + + +A +N I + V ++ ++++++ + ++F Sbjct: 199 EIKKLAGKILKSPILIEVAKQNSVSDLISHIVYSVESKNKQEFLIDMIKKKNLQQVLIFT 258 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + G+ +Q +R+ AL + G R+ +ATDVAARG+D+ Sbjct: 259 RTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFKCGLIRILVATDVAARGLDIE 318 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +L VI+ EL +NPE+ +HR GRTGRAG KG ++ Sbjct: 319 ELTHVINFELPNNPEDYVHRIGRTGRAGAKGFAI 352 >gi|665989|dbj|BAA11693.1| deaD [Bacillus subtilis] Length = 479 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 197/347 (56%), Gaps = 8/347 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F+N I I AL GY T VQ++++ L KD++V +QTGSGKT +FG+ L Sbjct: 1 MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 LA D + P AL + PTRELAVQV ++ + + G S +++ Sbjct: 61 CE--LANWDE----NKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +L+ +HIVVGTPGR+ DHI L + L +V+DEADEML++GF + +E I+ P Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R ++FSAT+ I L++ Y ++ + + + +I++ + V ++ + + ++ Sbjct: 175 ERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDV 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + I+FC T+ V++ T L + + + G + Q++R + + + G R Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARGID+ ++ LVI+ +L E+ +HR+GRTGRAG KG ++ Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI 341 >gi|329960847|ref|ZP_08299126.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057] gi|328532133|gb|EGF58937.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057] Length = 423 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 184/344 (53%), Gaps = 6/344 (1%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ + I +AL E GY T +QE + L+ KD+L AQTG+GKT AF + + Sbjct: 3 FENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L ++R AL + PTRELA+Q+G E TG+ V GGV + +L Sbjct: 63 LYKTDNR----KGIKALILTPTRELAIQIGESFEAYGRYTGLRHTVIFGGVGQKPQTDEL 118 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I+V TPGRL D + +N+ L VLDEAD MLD+GF DI IL P KR+ Sbjct: 119 KRGVQILVATPGRLQDLVNQGFINLKALDFFVLDEADRMLDMGFIHDIRRILKFLPAKRQ 178 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ P I TLA + D +V + + I V ++ + ++++L+ Sbjct: 179 TLFFSATMPPEIETLANSMLTDPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKD 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + ++F T+ + + L++ A+ G SQ R AL + RV IAT Sbjct: 239 PSIASVLIFTRTKHGADKLARTLSKSGIPAEAIHGNKSQNARQRALTGFKSHTLRVLIAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+AARGID+ L VI+ EL + PE +HR GRTGRAG G+++ Sbjct: 299 DIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIAL 342 >gi|332091754|gb|EGI96834.1| ATP-independent RNA helicase dbpA [Shigella boydii 5216-82] Length = 457 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQLFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G RV +ATDVAARG+D+ Sbjct: 250 TQKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + +++ W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQITLNWQT 368 Query: 372 APSVEAIRERDAQ 384 P +I +A+ Sbjct: 369 PPVNSSIVPLEAE 381 >gi|218548978|ref|YP_002382769.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ATCC 35469] gi|218356519|emb|CAQ89142.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia fergusonii ATCC 35469] Length = 457 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 204/367 (55%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KD+ V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHIDATLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGIQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + ++ + S + + + +L + + +VFC+ Sbjct: 191 IAAISGRVQRDPLTIEIDSTDAL-PPVEQHFYETSSSGKISLLQRLLSVYQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + +AL G+L Q++R L +G R+ +ATDVAARG+D+ Sbjct: 250 TKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG+ G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQ-RANIISDMLQLKLNWQM 368 Query: 372 APSVEAI 378 P+V I Sbjct: 369 PPAVTTI 375 >gi|213967864|ref|ZP_03396010.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato T1] gi|213927207|gb|EEB60756.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato T1] Length = 473 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 202/369 (54%), Gaps = 13/369 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ D++ A+TGSGKT AFG+ L + + N RF A Sbjct: 33 LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 89 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L ++ + V GGVS + L++GAHI+VGTPG Sbjct: 90 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 146 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+R L + L ++LDEAD MLD+GF D I I++ +P++R+ L+FSAT I Sbjct: 147 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTLLFSATYPVGI 206 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251 L+ + +D V + + H+D + +S R A+V +L + + + FC Sbjct: 207 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V L V L G+L Q++R L M + V +ATDVAARG+D+ Sbjct: 264 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L++V++ EL+ + E +HR GRTGRAG G++V ++ + +RA + + W+ Sbjct: 324 ALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIEELQKAPLNWQQ 383 Query: 372 APSVEAIRE 380 S+ +I+E Sbjct: 384 YDSL-SIKE 391 >gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1] gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1] Length = 580 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 143/420 (34%), Positives = 224/420 (53%), Gaps = 12/420 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +++ E GY + +Q + L +DV+ AQTG+GKT AFG+ + + + ++ Sbjct: 16 ILKSVEEMGYTQPSQIQSQAIPFVLDGRDVIGQAQTGTGKTAAFGIPIIDLVDPDFNKVQ 75 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129 A+ + PTRELAVQV E++ L + +V I GG S+ R+ R L+ G IVV Sbjct: 76 ------AVILCPTRELAVQVEGEIQKLAKYHRKINSVAIYGGESIDRQIRVLRKGVQIVV 129 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DHI L + + +VLDEADEMLD+GFRDDIE IL P+KR+ + FSAT+ Sbjct: 130 GTPGRVQDHINRGTLKLENTGIIVLDEADEMLDMGFRDDIEAILQEMPEKRQTVFFSATM 189 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + I L + YQ + + +A + I+ V S + + ++ + ++V Sbjct: 190 AKPILDLTRKYQNNPEIIKVAKKELTVDRIEQVFYEVKPSLKLELMARLMNVNNYALSVV 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ T+ L AL G+LSQ +R + R G V +ATDVAARGID Sbjct: 250 FCNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLCTVLVATDVAARGID 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + ++E V + +L + E+ +HR GRTGRAG+ G ++ FV + + L R S+ Sbjct: 310 VDNVEAVFNFDLPLDDESYVHRIGRTGRAGKSGKAINFVTGRRDFGKIRDLERFTKASIA 369 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDPEKIAAGFLRIH 424 PSV + E + ++D + S + D E+ + +L E+IA G +++ Sbjct: 370 KMDPPSVSDLIELKKAQFVKDVHTVISKEEDNQIFEETVGQLLTEGLSIEQIALGLMKLQ 429 >gi|15965498|ref|NP_385851.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti 1021] gi|307302618|ref|ZP_07582374.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti BL225C] gi|307318465|ref|ZP_07597899.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83] gi|15074679|emb|CAC46324.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021] gi|306895805|gb|EFN26557.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83] gi|306902982|gb|EFN33573.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti BL225C] Length = 499 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 208/389 (53%), Gaps = 19/389 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+++ GY T +Q + P L+ +D+L AQTG+GKT +F L + + L Sbjct: 9 LSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGR 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P L + PTRELA QV + + +A+ IGGVS + R L+ GA Sbjct: 69 AR---ARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FS Sbjct: 126 VLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----Y 241 AT+ P I LA + ++ R+ +A R + I VA +D +LR Sbjct: 186 ATMPPEIQKLADRFLQNPERLEVA--RRSSTAITVTQRFVAAHGKDYEKRAVLRELIRSQ 243 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 KNAI+FC+ + V+ + L H F V AL G++ Q+ R L +DG ++ +A+ Sbjct: 244 EDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVAS 303 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ + + ++ + + Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSDAIEK 363 Query: 362 EANVSVVW---------EPAPSVEAIRER 381 V W EP S ++ R+R Sbjct: 364 LIGQKVEWFNGDLSELPEPMESHDSRRDR 392 >gi|311277865|ref|YP_003940096.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter cloacae SCF1] gi|308747060|gb|ADO46812.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1] Length = 643 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 193/346 (55%), Gaps = 8/346 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLRMGFIEDVETIMAEIPDGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR Sbjct: 311 VERISLVVNYDIPMDTESYVHRIGRTGRAGRAGRALLFV-ENRERR 355 >gi|157145669|ref|YP_001452988.1| ATP-dependent RNA helicase DbpA [Citrobacter koseri ATCC BAA-895] gi|157082874|gb|ABV12552.1| hypothetical protein CKO_01417 [Citrobacter koseri ATCC BAA-895] Length = 457 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 204/370 (55%), Gaps = 12/370 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P E L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + + Sbjct: 10 LPAAQLENLNELGYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DA 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 F S L + PTRELA QV EL L + ++ +C GG +R LQ+ Sbjct: 68 SLFQTQS----LVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHA 122 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HI+V TPGRL DH++ +++ L+ +V+DEAD MLD+GF D I+ ++ +P +R+ L+ Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPSRRQTLL 182 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT AI ++ Q++ + + I S + S I+ + + + + +L H Sbjct: 183 FSATWPEAIAAISGRVQQNPLTIEIDSVDALPS-IEQQFFETSSQGKIPLLQKLLSQHQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VFC+T+ L ++L G+L Q++R L +G ARV +ATDVA Sbjct: 242 ASCVVFCNTKKDCQSVCDALNSVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARG+D+ LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANILSEML 360 Query: 364 NVSVVWEPAP 373 + + W P Sbjct: 361 QLKLNWLTPP 370 >gi|167770986|ref|ZP_02443039.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM 17241] gi|167667026|gb|EDS11156.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM 17241] Length = 397 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 193/335 (57%), Gaps = 11/335 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ LT +QE + L ++++ A TG+GKT AFG+ + ++ P+ Sbjct: 29 KAVERMGFTELTEIQEKAIPVMLEGREIIAKAPTGTGKTCAFGVPIM-------EKIDPS 81 Query: 73 S-APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + A A+ + PTREL Q+ EL E + + V VA GG + R+ L+ GA IVV Sbjct: 82 ALAVQAVVLCPTRELCTQIVDELRELAHFRPQVRVAAVYGGQQIDRQINALKRGAQIVVA 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ + +N+S + VLDEADEMLD+GF D+ ILD PK+R+M+MFSATIS Sbjct: 142 TPGRMLDHMHRRTINLSKVSIAVLDEADEMLDMGFYKDVCKILDRLPKERQMVMFSATIS 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-IVNILRYHGAKNAIV 249 + + YQ+D V + + I ++ +L ++ + A + IL + ++ Sbjct: 202 REVMDIGWLYQRDTVELTVEPVKESQPKI-HQYMLESVGRQKLADLCYILEANDFHKVMI 260 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ S + + +L E F L+G++ Q ER+ + R G V +ATDVAARGID Sbjct: 261 FCNTKYSTASLSNLLRERGFNADCLNGDMRQSERNQIMARFRSGEISVLVATDVAARGID 320 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 + D++ V + E+ E LHR GRTGRA ++G+S Sbjct: 321 VLDVDAVFNYEIPLENEYYLHRIGRTGRAKKEGVS 355 >gi|295675110|ref|YP_003603634.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] gi|295434953|gb|ADG14123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] Length = 467 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/340 (38%), Positives = 192/340 (56%), Gaps = 8/340 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L++ GYV +T +Q A L L D++ A+TGSGKT AF LAL + L A Sbjct: 16 LPPAMLANLTQLGYVEMTPIQAASLPIALGGHDLIAQAKTGSGKTAAFSLALLARLDAR- 74 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125 +F A+ + PTRELA QV +E+ L A+ + V GG + + L++GA Sbjct: 75 -KFDTQ----AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ DH+ L + L +VLDEAD MLD+GF DDI + PK+R+ L+F Sbjct: 130 HVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTLLF 189 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I L++ + ++ V +A E S I R V +R +A+ +L ++ Sbjct: 190 SATYPEGIAKLSQQFLRNPKEVKLA-ERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPV 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + I FC+T+ VL F +AL GEL Q+ER L + V +ATDVAA Sbjct: 249 STIAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+ LE VI+ +++ +PE HR GRTGRA ++G ++ Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWAL 348 >gi|154490038|ref|ZP_02030299.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC 43184] gi|154089480|gb|EDN88524.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC 43184] Length = 607 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 138/387 (35%), Positives = 205/387 (52%), Gaps = 14/387 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + I +A+ E GY + VQE ++ P L + DV+ AQTG+GKT AFGL Sbjct: 1 MKTFEELGVAAPILKAIQEMGYESPMPVQEEVI-PFLLGDDNDVIALAQTGTGKTAAFGL 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 + + P AL + PTREL +Q+ +L Y+K + V GG S+ Sbjct: 60 PILQKIDV------TTYHPQALVLCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + L+ G H+VV TPGRL D + K +++S +K V++DEADEML++GF D I IL Sbjct: 113 ESQIKTLKRGVHVVVATPGRLLDLMNRKTVDLSLVKNVIMDEADEMLNMGFTDSINAILA 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P+ R ML+FSAT+ I + K Y K+ + I ++N + +I +V D+ A Sbjct: 173 EVPENRNMLLFSATMPKEIANITKKYMKNPKEIVIGNKNEGNKNIRDIYYMVQARDKYLA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + I ++ IVFC TR L + + +L GELSQ +R +Q R Sbjct: 233 LKRIADFYPNIYGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKN 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARG+D+ DL VI+ L E+ HR GRTGRAG+ G+S+ + + Sbjct: 293 IQLLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKG 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381 + + R N P+ AI E+ Sbjct: 353 KIREIERIINKKFEKGEMPTGHAICEK 379 >gi|325497405|gb|EGC95264.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ECD227] Length = 457 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 204/367 (55%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KD+ V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHIDATLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGIQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + ++ + S + + + +L + + +VFC+ Sbjct: 191 IAAISGRVQRDPLTIEIDSTDAL-PPVEQHFYETSSSGKISLLQRLLSVYQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + +AL G+L Q++R L +G R+ +ATDVAARG+D+ Sbjct: 250 TKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG+ G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQ-RANIISDMLQLKLNWQM 368 Query: 372 APSVEAI 378 P+V I Sbjct: 369 PPAVTTI 375 >gi|158520071|ref|YP_001527941.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158508897|gb|ABW65864.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans Hxd3] Length = 464 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 203/347 (58%), Gaps = 10/347 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + A+ + G+ T +Q IL L +D AQTG+GKT AF +++ + + Sbjct: 60 DLPDALMHAIYDLGFTYCTPIQAEILPSTLAGRDAFGRAQTGTGKTAAFLISILTHM--H 117 Query: 66 NDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDL 121 N+ + A P AL +APTREL +Q+G E + L V + GG+ +++ R Sbjct: 118 NNPITAARKPGTPRALVLAPTRELVIQIGEEAQQLARHLPVNIVSVFGGMDFKQQQDRLT 177 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 + I+V TPGRL D R + + + ++ +V+DEAD MLD+GF D+ I+ ++P+K Sbjct: 178 REPVDIIVATPGRLLDFSRRRAVMLKQVEILVIDEADRMLDMGFIPDVRKIIYATPQKGN 237 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NI 238 R+ L+FSAT++ AIT LA + +D V+V I E+ +D + V + SDR A++ NI Sbjct: 238 RQTLLFSATLTEAITRLASAWTRDPVQVAIEPEHVAVDSVD-QVVYIVTSDRKLALLYNI 296 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + +VFC+ + +VSR L + + L+G++ QQ+RS L+ + G+ RV Sbjct: 297 IVQQNLSRVLVFCNRKDAVSRLADRLTRYGIKCEILTGDVPQQKRSRRLEDFKSGKIRVL 356 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDV ARGI + D++ V++ +L +PE+ +HR GRTGRAG G S+ Sbjct: 357 VATDVMARGIHVEDMDHVVNFDLPHDPEDYVHRIGRTGRAGAVGTSI 403 >gi|295097653|emb|CBK86743.1| ATP-dependent RNA helicase CsdA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 631 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + + Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPD----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 72 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 AELPNAELLGKR 382 >gi|239993440|ref|ZP_04713964.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126] Length = 459 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/344 (36%), Positives = 194/344 (56%), Gaps = 8/344 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I I +AL +G L+ +Q L L+ KDV+ AQTGSGKT+ F + + E Sbjct: 10 DINPAITKALDSQGIYQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCF--VIPALQHVE 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124 + F+ A+ + PTRELA QV ++ G + V GG + + + L++ Sbjct: 68 VNDFTTQ----AIILCPTRELADQVAQQCRSAAKNIGNIKVTTLCGGQPMGPQIQSLKHS 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HI+VGTPGR+ DH+ + +++S++K VLDEAD MLD+GF DD+ I +PK+ + L+ Sbjct: 124 PHIIVGTPGRVMDHVEKRRIDLSNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT + I +AK Y + V + S++ + + I V R A+ +L ++ Sbjct: 184 FSATFTEQIERVAKQYLHNPVTCKVESQDSKPA-ITQLGYNVLPHTRTQALKAVLTHYQP 242 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 KNAIVFC+ + V+ + L E F L G+L Q +R++ L +V +ATDVA Sbjct: 243 KNAIVFCNRKVQVNEVVEELIEDGFSAAGLQGDLEQHQRTSVLMQFASDALQVLVATDVA 302 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARG+D+ D+ VI+ +S PE +HR GRT RAG +GM+V ++ Sbjct: 303 ARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAQGMAVTLV 346 >gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas reinhardtii] gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas reinhardtii] Length = 571 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 192/358 (53%), Gaps = 19/358 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ +A+ + GY + +Q A + L+++DV+ A+TGSGKT AF L + + ++ + Sbjct: 159 LPSLLLKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPMLAYIMRQP 218 Query: 67 --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + + A P A+ +APTRELA Q+ E L TG V +GG S+ + L+ G Sbjct: 219 PMNEENEADGPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQGTKLRKG 278 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----- 179 IV+ TPGRL D I ++ VVLDEAD M+DLGF + +LD+ PK Sbjct: 279 CEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPKSTLKPD 338 Query: 180 ------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227 R MFSAT+ PA+ LAK Y + V V I S R ++ R +V Sbjct: 339 EEGAVLEENRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGRVTDNVTQRVFVVK 398 Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 +++ + L K IVF +T+ + + E + L G +Q +R + Sbjct: 399 ENEKGRLLEQELNNVDEKRVIVFVNTQRQCDNVHRHMDELGYHCTILHGGKTQDQREAGI 458 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + RDG V IATDVA RGID+PD+ LV++ ++ +N EN HR GRTGRAGRKG++V Sbjct: 459 KGFRDGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRIGRTGRAGRKGIAV 516 >gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille] gi|151281157|gb|ABR89567.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 478 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 138/391 (35%), Positives = 207/391 (52%), Gaps = 18/391 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73 L GY +T +Q L L +D++ A+TGSGKT AFG+ L L +P Sbjct: 34 LDSLGYREMTPIQAQSLPVILELRDLIAQAKTGSGKTAAFGIGLLQKL-------NPTWF 86 Query: 74 APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL I PTRELA QV EL L A + V GG + + L++GAHIVVGTP Sbjct: 87 AVQALVICPTRELADQVSNELRRLARATENIKVLTLCGGAPMRPQIASLEHGAHIVVGTP 146 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI + +N+S ++ +VLDEAD M+D+GF ++I I+ + P +R+ L+FSAT Sbjct: 147 GRIRDHISRETINLSKVQTLVLDEADRMVDMGFYEEIAGIVSACPTRRQTLLFSATYPDD 206 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I + + +D V + + + QH D I+ R V DR+ A+ +L+++ + + F Sbjct: 207 IRRASAEFLRDPVEIKVEA---QHDDSQIEQRFYAVDYDDRNAAVATLLKHYRPVSTLAF 263 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ L F +AL GEL Q+ER L + + V +ATDVAARG+D+ Sbjct: 264 CNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVATDVAARGLDI 323 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L VI+ ++S + E +HR GRTGR KG+++ + N ++ + + N V W Sbjct: 324 QSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIEEYQNKPVQWF 383 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 +E D L P+ I G +K Sbjct: 384 DLKDLEVAEGGD----LHAPMVTLCIMGGKK 410 >gi|221311883|ref|ZP_03593730.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|221316207|ref|ZP_03598012.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321119|ref|ZP_03602413.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. JH642] gi|221325403|ref|ZP_03606697.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. SMY] gi|255767828|ref|NP_391790.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|254763269|sp|P42305|DBPA_BACSU RecName: Full=ATP-dependent RNA helicase dbpA gi|225185456|emb|CAB15947.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 479 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 197/347 (56%), Gaps = 8/347 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F+N I I AL GY T VQ++++ L KD++V +QTGSGKT +FG+ L Sbjct: 1 MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 LA D + P AL + PTRELAVQV ++ + + G S +++ Sbjct: 61 CE--LANWDE----NKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +L+ +HIVVGTPGR+ DHI L + L +V+DEADEML++GF + +E I+ P Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R ++FSAT+ I L++ Y ++ + + + +I++ + V ++ + + ++ Sbjct: 175 ERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDV 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + I+FC T+ V++ T L + + + G + Q++R + + + G R Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARGID+ ++ LVI+ +L E+ +HR+GRTGRAG KG ++ Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI 341 >gi|300779372|ref|ZP_07089230.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium gleum ATCC 35910] gi|300504882|gb|EFK36022.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium gleum ATCC 35910] Length = 562 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 208/377 (55%), Gaps = 12/377 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64 N+ I +A+ E GY + T +Q+ + L + +D++ AQTG+GKT AF L + Sbjct: 8 NLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLPIL----- 62 Query: 65 ENDRFSPASAPLAL-AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121 D S + L + PTREL +Q+ ++++ Y K AV GG S+ + R L Sbjct: 63 --DMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVY-GGSSIVEQMRSL 119 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 ++ I+VGTPGR+ D I K L+ S + +VLDEADEML +GF+D++E IL +P+ ++ Sbjct: 120 KDKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQ 179 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT++ + ++KNY R+++ S N +I + +V + A+ ++ Sbjct: 180 TFLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDA 239 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + + +I+FC TR L ++ + AL G+LSQ +R ++ R + +AT Sbjct: 240 NPNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVAT 299 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+D+ L VIH L +PE +HRSGRTGRAG+ G+S+ +I R+ +++ Sbjct: 300 DVAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKS 359 Query: 362 EANVSVVWEPAPSVEAI 378 + + P+ + I Sbjct: 360 ATKIEIHERTIPTGDDI 376 >gi|77464394|ref|YP_353898.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1] gi|77388812|gb|ABA79997.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1] Length = 461 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/353 (36%), Positives = 190/353 (53%), Gaps = 4/353 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L++ + T +Q + ++ +D++ AQTG+GKT+AFGL L LL P Sbjct: 23 QGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLHRLLGVGHPPPPR 82 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL +APTREL Q+ LE T V V GG S++R+ L GA I+V TP Sbjct: 83 TI-RALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERLARGADIMVATP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + + H +VLDEAD+MLD+GF + I P KR+ L+FSAT+ Sbjct: 142 GRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQTLLFSATMPKL 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA Y ++ V+V +A + I D+ + + L+ H + A+VF Sbjct: 202 IEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQKHPGEQALVFGR 261 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + K+L F+ ++ G SQ +R L RDG V +ATDVAARGID+P Sbjct: 262 TKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVLVATDVAARGIDIPG 321 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362 + V + ++ + PEN +HR GRT RAG +G +V FV P M+ R E+L ++ Sbjct: 322 VRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRAVEKLLKQ 374 >gi|221640283|ref|YP_002526545.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides KD131] gi|332559285|ref|ZP_08413607.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides WS8N] gi|221161064|gb|ACM02044.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides KD131] gi|332276997|gb|EGJ22312.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides WS8N] Length = 453 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/353 (36%), Positives = 190/353 (53%), Gaps = 4/353 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L++ + T +Q + ++ +D++ AQTG+GKT+AFGL L LL P Sbjct: 15 QGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLHRLLGVGHPPPPR 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL +APTREL Q+ LE T V V GG S++R+ L GA I+V TP Sbjct: 75 TI-RALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERLARGADIMVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + + H +VLDEAD+MLD+GF + I P KR+ L+FSAT+ Sbjct: 134 GRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQTLLFSATMPKL 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA Y ++ V+V +A + I D+ + + L+ H + A+VF Sbjct: 194 IEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQKHPGEQALVFGR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + K+L F+ ++ G SQ +R L RDG V +ATDVAARGID+P Sbjct: 254 TKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVLVATDVAARGIDIPG 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362 + V + ++ + PEN +HR GRT RAG +G +V FV P M+ R E+L ++ Sbjct: 314 VRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRAVEKLLKQ 366 >gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53] gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53] Length = 498 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 205/378 (54%), Gaps = 18/378 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A++E GY T +Q+ + P L +DVL AQTG+GKT AF L + + L Sbjct: 11 PKVL-KAVAETGYDTPTPIQDGAIPPALEGRDVLGIAQTGTGKTAAFTLPMITLLGRGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L +APTRELA QV + T + A+ IGG S + + + G + Sbjct: 70 R---ARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQDKLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH+ L ++ +K +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR------DNAIVNIL-- 239 T++P I + + + +V +A + +I V+ S + A++ L Sbjct: 187 TMAPEIERITNTFLSNPAKVEVARAATTNVNIKQGVVMFRASAKLREATEKRALLRALIN 246 Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 NAI+FC+ +A V K L ++ + + G+L Q R+ L+ RD + R Sbjct: 247 AEGDACSNAIIFCNRKADVDVVAKSLNKYGYDAAPIHGDLEQSHRTRTLESFRDNKLRFL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +A+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G+++ + ++ E Sbjct: 307 VASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGVAIMICSGRDEKNLED 366 Query: 359 LFREANVSVVWEPAPSVE 376 + R +V P P ++ Sbjct: 367 VER-----LVQNPIPRLD 379 >gi|308172326|ref|YP_003919031.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus amyloliquefaciens DSM 7] gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus amyloliquefaciens DSM 7] Length = 511 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 131/397 (32%), Positives = 218/397 (54%), Gaps = 27/397 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++++ G+ T +Q + L KDV+ AQTG+GKT AFG+ L ++ +P Sbjct: 33 KSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-------EKMNPE 85 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S + A+ IAPTRELA+QV EL + V GG + R+ R L+ HI+VGT Sbjct: 86 SPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 145 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI + + ++++ VV+DEADEML++GF DDIE IL + P + + L+FSAT+ Sbjct: 146 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPA 205 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + V + ++ S+I + V + + + +L + AIVF Sbjct: 206 PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFG 265 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + L + + G+L+Q +R AL+ ++G V +ATDVAARG+D+ Sbjct: 266 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 325 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V + ++ +PE+ +HR GRTGRAG+ GM++ F+ P R + + R Sbjct: 326 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR--------- 371 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 ++E +R R +++P ++++G ++ VD L Sbjct: 372 ---AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVDRL 404 >gi|228924198|ref|ZP_04087469.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835416|gb|EEM80786.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 481 Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/370 (32%), Positives = 198/370 (53%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL +APTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLAPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAIRERDA 383 S E + + A Sbjct: 372 SKEEVMKEKA 381 >gi|311693479|gb|ADP96352.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15] Length = 507 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 128/342 (37%), Positives = 193/342 (56%), Gaps = 8/342 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ EA+S GY + +Q + L +L AQTG+GKT AF L L S + A Sbjct: 13 PAVL-EAVSAVGYETPSPIQAQAIPALLAGNHLLGVAQTGTGKTAAFALPLLSRIDAS-- 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126 + P L +APTRELA+QV +K V GG + + + L+ GA Sbjct: 70 ----VTDPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFYPQIKGLRRGAQ 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++VGTPGR+ DH+R L + LKA+VLDEADEML +GF DD+E IL +P+ + +FS Sbjct: 126 VIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPENCQRALFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I +A+ Y ++A V I SE R I + V + +A+ IL Sbjct: 186 ATMPPQIKKVAQTYLRNATEVRIESETRTVERISQFVLPVYAERKLDALTRILEVEPIDA 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+F T+A + + L+ V LSG+L+Q++R ++ ++ G+ + IATDVAAR Sbjct: 246 AIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ + VI+ ++ + E +HR GRTGRAGR+G ++ ++ Sbjct: 306 GLDVSRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLV 347 >gi|189346086|ref|YP_001942615.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245] gi|189340233|gb|ACD89636.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245] Length = 418 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/341 (37%), Positives = 191/341 (56%), Gaps = 5/341 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64 I + I +A+ E GY T +Q + L D+L AQTG+GKT AF + + L A Sbjct: 8 IIEPILQAIEEEGYQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAAFAIPVLQLLNAVK 67 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 N++ + L I PTRELA+Q+G + TG+ V GGV+ + + LQ G Sbjct: 68 TNEKKRKIRS---LIITPTRELAIQIGESFKAYGRHTGLTSTVIFGGVNQNPQTASLQKG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I++ TPGRL D + L++ +++ VLDEAD MLD+GF DI IL PKK++ L Sbjct: 125 IDILIATPGRLLDLMNQGHLHLRNIEFFVLDEADRMLDMGFIHDIRKILAELPKKKQSLF 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ P IT LA + + V V++ + I+ + V +++N +V++L+ Sbjct: 185 FSATMPPEITRLAASILHNPVEVSVTPVSSTVEIINQQIFFVDKGNKNNLLVHLLKNQDI 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K A+VF T+ + K L +H A+ G +Q R AL ++ RV +ATD+A Sbjct: 245 KTALVFTRTKHGADKVVKYLLKHDITAAAIHGNKAQNARQRALTNFKEQTMRVLVATDIA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ +LE VI+ ++S+ E +HR GRTGRAG KG ++ Sbjct: 305 ARGIDVDELEYVINFDMSNIAETYVHRIGRTGRAGAKGTAI 345 >gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957] gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant RNA helicase(C-terminal) (rhlE-like) [Ralstonia solanacearum CFBP2957] Length = 603 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 210/398 (52%), Gaps = 37/398 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND------ 67 AL E Y T VQ + L +D+LV++QTGSGKT AF L + + + Sbjct: 44 ALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQRPRM 103 Query: 68 ----------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCI 109 R PA A P L + PTRELA+QV GR L +V A + Sbjct: 104 DGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCASIL 157 Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169 GG+ ++ L I++ TPGRL DHI +++S L +V DEAD MLD+GF DDI Sbjct: 158 GGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADDI 217 Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-AL 228 E I+ ++P+ R+MLMFSAT+ I LA+ ++ R+ IA+ S+I+ R + Sbjct: 218 EAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFTDDM 277 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 S + + ++LR K AIVF +T+ + L E F AL G++ Q R+ L Sbjct: 278 SHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLT 337 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +R G R+ +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ ++ Sbjct: 338 ALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLV 397 Query: 349 PQN---MQRRAERLF-REANVSVV--WEPAPSVEAIRE 380 RR ER R N +VV EP + + RE Sbjct: 398 NHGDTFQWRRIERFVDRRINATVVEGLEPKRAPKPRRE 435 >gi|167748599|ref|ZP_02420726.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662] gi|167651913|gb|EDR96042.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662] Length = 478 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 195/345 (56%), Gaps = 8/345 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL+ GY T++Q+ ++ P L K+++ A TGSGKT AF + + + E + Sbjct: 14 ILEALNGLGYKKPTNIQQEVIPPMLAGKNIVAKAPTGSGKTAAFAIPICQNVRWEEN--- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP AL + P RELAVQV +E+ + K + V GG + ++ R L+ +HIV G Sbjct: 71 ---APQALVLEPARELAVQVSQEMFHIGRKKRLKVPAVFGGFPIDKQIRTLKQKSHIVAG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHIR + L +S+++ +V+DEAD MLD+GF D+++ IL P R+ +FSAT+ Sbjct: 128 TPGRVMDHIRRETLKLSNVQWLVIDEADLMLDMGFIDEMKQILSLVPADCRISLFSATLK 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA + +AV V + Q I + + + + ++IL ++ ++F Sbjct: 188 PEIRELADEFIPEAVLVMQEAGEEQAPAITEKLYFASQERKYDTFLDILMDENPQSCMIF 247 Query: 251 CSTRASVS-RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 C TR + F K+ + +F L G++ Q+ER + R G R IATDVAARGID Sbjct: 248 CGTREMTNVLFQKLRRKRIF-CGMLHGDMEQKERLKTVNAFRRGGFRFLIATDVAARGID 306 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ V++ + + E +HR GRTGR G G +V ++ ++ QR Sbjct: 307 FEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGTAVSLVTEDDQR 351 >gi|88803270|ref|ZP_01118796.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P] gi|88780836|gb|EAR12015.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P] Length = 609 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 161/555 (29%), Positives = 276/555 (49%), Gaps = 54/555 (9%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65 + + I +AL++ GY T +QE + + + D+ AQTG+GKT AF L + LL Sbjct: 9 LKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLPILE-LLDS 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 N + A+ ++PTRELAVQ+G + ++ V V GG S+ + R L+ G Sbjct: 68 N-----SGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSLKRG 122 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 + IVVGTPGR D I+ + L + ++K +VLDEADEML++GF+D+++ +L+++P ++ L+ Sbjct: 123 SQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQTLL 182 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT + ++AKNY V + +N+ + + V R A+ I + Sbjct: 183 FSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRYPALKRIADLNPD 242 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+FC TR L + + AL G+LSQ +R + + R ++ +ATDVA Sbjct: 243 IYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILVATDVA 302 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAE 357 ARG+D+ +L VI+ +L EN HRSGRTGRAG G+S+ ++ + +++ + Sbjct: 303 ARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPIEKIIQ 362 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAKH 411 + F EA V PS + I + ++ + +I+ +E ++ D L L Sbjct: 363 KKFTEAKV-------PSGKDICQNQLMSLIDKVV---NIEVNETQINDFLPSIYEKLEGL 412 Query: 412 DPEKIAAGFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470 D E++ F+ + L E ++ +S +D+SRA R + + F Sbjct: 413 DREQLIQKFVSLEFNTMLAYYENAKDLNDLSS----KDNSRA-------RTENENMTRFF 461 Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530 +++G K L+ ++ + ++ IG+I + +F E+ + D Sbjct: 462 INIGRKDNLNPGKLIGLINEQNIGDKVEIGSIDILDTFSFFEIDKNFEDKT--------- 512 Query: 531 IQLKYLGGEKPDFRG 545 L+ +PDF G Sbjct: 513 --LEAFSSNQPDFDG 525 >gi|299768643|ref|YP_003730669.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1] gi|298698731|gb|ADI89296.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1] Length = 644 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 212/379 (55%), Gaps = 15/379 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ T VQE + L KD+LVS+QTGSGKT AF LA T+ Sbjct: 12 ETLQQALEGLGFTAPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAGQETV 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + DR + P L I+PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 72 VPFKDRMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFAKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + + + + A+++DEAD MLDLGF +D+E I + + +++ Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISELAANRKQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA KD +R+ I + + ++DI + + + L Sbjct: 191 TLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLS 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 DENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAER 358 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ + + + RA Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRERGKIRALE 370 Query: 359 LFREANVSVV----WEPAP 373 + EA +SV EP+P Sbjct: 371 EYLEARLSVSEIEGLEPSP 389 >gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273] gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272] gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272] gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273] Length = 481 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L+++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ ++ + + ++ + I+FC T Sbjct: 192 EKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V K L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG KG ++ I R E + + AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEIEEYIGFEIPKALAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56] Length = 420 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 130/345 (37%), Positives = 193/345 (55%), Gaps = 6/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+++ GY T +Q + L +D+ AQTG+GKT +F L + S L E Sbjct: 9 LSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLL--EK 66 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R + A P L + PTRELA QV E + VA+ IGGVS + R L+ GA Sbjct: 67 GR-ARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH L +S ++ +V+DEAD MLD+GF DIE I P R+ L FS Sbjct: 126 VLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA 244 AT+ P I LA + ++ R+ +A + R V D + V ++R G Sbjct: 186 ATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQGE 245 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG ++ +A+DV Sbjct: 246 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQLLVASDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 306 AARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 350 >gi|329767883|ref|ZP_08259397.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341] gi|328838671|gb|EGF88270.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341] Length = 486 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 198/355 (55%), Gaps = 10/355 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE + Q ++L +++ T +Q + L D+L AQTGSGKT AFG+ L Sbjct: 1 MTTFEELGVSQETVQSLRNMNFISPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 T+ ++D+ +L +APTRELA QVG +L + G+ V++ GG S+ R+ Sbjct: 61 VDTV-RKSDQLQ------SLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQI 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +DL+ I+VGTPGR+ DHI + + + L +VLDEADEML++GF +D+ FIL Sbjct: 114 QDLKKRPQIIVGTPGRVIDHINRRTIKLDSLTHLVLDEADEMLNMGFIEDVRFILSKITS 173 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + + L+FSAT+ I L+K++ KD + S+ DI A + +++ ++ Sbjct: 174 RHQTLLFSATMPKTIMELSKDFMKDYKLIKTISDEDLKPDITEYATIARENEKLETLIGF 233 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L AIVF T+ V + L + L G+++Q +R L+ ++ ++ Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARGID+ D+ V + ++ + E+ HR GRTGRAG+ G+++ F+ P M Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEM 348 >gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73] gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73] Length = 454 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 131/343 (38%), Positives = 193/343 (56%), Gaps = 9/343 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +Q A + L++KDVL AQTG+GKT +F L + + L E R + A Sbjct: 19 KAIKSVGYTTPTPIQSATIPHILQKKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARA 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV + + VA+ IGGVS + R L+ GA I++ TP Sbjct: 76 RIPRTLILEPTRELAAQVKENYDKYGIHHNLNVALLIGGVSFEHQDRKLERGADILIATP 135 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH RGK L + ++ +V+DEAD MLD+GF +IE I +P R+ L FSAT++P Sbjct: 136 GRLLDHFERGKLLLVG-VEILVIDEADRMLDMGFIPNIERICKLTPFTRQTLFFSATMAP 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGA---KNA 247 IT L K + + V I I R V D AI+ L + KNA Sbjct: 195 EITQLTKKFLHSPIYVEITKTFSTAKTITQRLVKSGSKPWDKRAILRELIHKEGDELKNA 254 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+ + +S + L +H F V AL G++ Q R+N L +D + + +A+DVAARG Sbjct: 255 IIFCNRKKDISELFRSLVKHNFSVGALHGDMDQHSRTNTLANFKDNKLTLLVASDVAARG 314 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +D+P + V + ++ ++ E+ +HR GRTGRA R G + ++ + Sbjct: 315 LDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRNGKAFTIVTK 357 >gi|319427184|gb|ADV55258.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 413 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 189/340 (55%), Gaps = 4/340 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFSP 71 ++E GY T +Q + L ++DV+ AQTG+GKT AF L + L+A+N + Sbjct: 15 TITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPILHLLMAKNVEQKAER 74 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELAVQV + T + + + GGVS+ + + G +++ T Sbjct: 75 VKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQVDVFKTGIDVLIAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R LN++ L +V DEAD MLD+GF D+I +L PK R+ L+FSAT+ Sbjct: 135 PGRLLDHLRQGVLNLNQLTTLVFDEADRMLDMGFMDEINAVLKQVPKDRQTLLFSATLDD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250 AI L+K+ ++ + + N + ++ R + SDR V +++R + ++F Sbjct: 195 AIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAID-SDRKTEFVSHLIRSNHWHQVLIF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V R + L + A G+LSQ R LQ + G +V +ATDVAARG+D+ Sbjct: 254 SRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGNIQVLVATDVAARGLDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +L+ VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 314 VELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 353 >gi|33598065|ref|NP_885708.1| putative ATP-dependent RNA helicase [Bordetella parapertussis 12822] gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis] Length = 477 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 197/344 (57%), Gaps = 2/344 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71 +++++ GY N T +Q + + +DV+ +AQTG+GKT AF L + L+ N SP Sbjct: 30 KSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASP 89 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P+ AL + PTRELA QV ++ T + AV GGV + ++ L+ G ++V Sbjct: 90 ARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVA 149 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ K +N+S + +VLDEAD MLD+GF D+E I+ P +R+ L+FSAT S Sbjct: 150 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFS 209 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L ++Y V + +A+ N + A + + A+V++++ G K IVF Sbjct: 210 NEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHLVKSRGLKQVIVF 269 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +T+ +R + L + ++ G+ +Q +R AL+ + G V +ATDVAARG+D+ Sbjct: 270 SNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVATDVAARGLDV 329 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ +L N E+ +HR GRTGRAG G ++ + + +R Sbjct: 330 AGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEER 373 >gi|283788210|ref|YP_003368075.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter rodentium ICC168] gi|282951664|emb|CBG91364.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter rodentium ICC168] Length = 626 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 200/370 (54%), Gaps = 7/370 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 19 EALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE------L 72 Query: 73 SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVVGT Sbjct: 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 133 PGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPE 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI + + + K+ V I S DI V ++ A+V L AI+F Sbjct: 193 AIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 253 RTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 313 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 Query: 372 APSVEAIRER 381 P+ E + +R Sbjct: 373 LPNAELLGKR 382 >gi|306821248|ref|ZP_07454862.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550760|gb|EFM38737.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 517 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 139/424 (32%), Positives = 229/424 (54%), Gaps = 14/424 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I + I +A+ G+ ++T +QE I+ + + DV+ +QTG+GKTVAFG+ L L + Sbjct: 8 DINENILKAIDAMGFEDMTQIQEKIVPVAVNKCDVIGQSQTGTGKTVAFGIPLIQNLDFD 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ ++ + PTRELA+QV E+ L GG + R+ + L++ Sbjct: 68 EEKIQ------SVIMTPTRELAIQVTAEINRLLRFLPTKAVALYGGEEITRQIKRLKDRP 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DHIR + + ++ VVLDEADEML +GF +DIE IL+ P + ++F Sbjct: 122 AIIVATPGRLMDHIRRRTVKTEYINTVVLDEADEMLSMGFVEDIEEILEQMPNRSITMLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +++ + KD + V + + ID + + + SD+ +A+ +L + Sbjct: 182 SATMPDRIKKISEKFLKDPLFVKVERKTLTVDSIDQKYIQIQESDKFDALCRLLDIYQPP 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ V L ++V + G++ Q R L+ + G R+ +ATDVAA Sbjct: 242 LCIIFGRTKRRVDELISGLQLRDYKVEGIHGDMKQDRREKVLERFKKGNIRILVATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-RLFREA 363 RG+D+ + VI+ +L E +HR GRTGRAG+ G+S FV P+ M+ E ++ Sbjct: 302 RGLDISGVTHVINFDLPQEIEGYVHRIGRTGRAGKSGVSFTFVHPKEMEFLQEIEHHTKS 361 Query: 364 NVSVVWEPAPS--VEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAAG 419 + P S EAI R +I+ D + LD+ + +EK K+ LL ++D I + Sbjct: 362 KMEKFKNPTVSQAKEAIYLRATDKIV-DLMDLDN-EKEEKLEKIAQSLLERYDAVDIISA 419 Query: 420 FLRI 423 LR+ Sbjct: 420 ALRV 423 >gi|120598117|ref|YP_962691.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|146293812|ref|YP_001184236.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|120558210|gb|ABM24137.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145565502|gb|ABP76437.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 413 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 189/340 (55%), Gaps = 4/340 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFSP 71 ++E GY T +Q + L ++DV+ AQTG+GKT AF L + L+A+N + Sbjct: 15 TITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPILHLLMAKNVEQKAER 74 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELAVQV + T + + + GGVS+ + + G +++ T Sbjct: 75 VKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQVDVFKTGIDVLIAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R LN++ L +V DEAD MLD+GF D+I +L PK R+ L+FSAT+ Sbjct: 135 PGRLLDHLRQGVLNLNQLSTLVFDEADRMLDMGFMDEINAVLKQVPKDRQTLLFSATLDD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250 AI L+K+ ++ + + N + ++ R + SDR V +++R + ++F Sbjct: 195 AIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAID-SDRKTEFVSHLIRSNYWHQVLIF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V R + L + A G+LSQ R LQ + G +V +ATDVAARG+D+ Sbjct: 254 SRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGNIQVLVATDVAARGLDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +L+ VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 314 VELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 353 >gi|152969927|ref|YP_001335036.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954776|gb|ABR76806.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 457 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 206/372 (55%), Gaps = 10/372 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+++T VQ A L L KDV V A+TGSGKT AFGL L + + RF S Sbjct: 18 LNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV EL L + + + GG +R LQ+ HI+V TPG Sbjct: 75 ---LVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ +++ L+ +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++ Q++ + I + + + I+ + V+ + + +L H + +VFC+T Sbjct: 192 AAISGRVQRNPQTIEINTVDALPA-IEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L ++L G+L Q++R L +G RV +ATDVAARG+D+ L Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372 LV++ EL+ +PE +HR GRT RAG +G+++ F P+ Q RA L +S+ W PA Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369 Query: 373 PSVEAIRERDAQ 384 P+ I A+ Sbjct: 370 PTGNTIAPLTAE 381 >gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 712 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 206/376 (54%), Gaps = 16/376 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + A+++ G+ +++Q + L +D+ AQTG+GKT AFGL L +++ A Sbjct: 55 GLPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLPLLASVEAH 114 Query: 66 NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122 + P AL + PTRELA+QV +E + V V GG ++R L+ Sbjct: 115 R-----GTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALR 169 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 +G H+VVGTPGR+ DH+ GL + + +VLDEADEML +GF +D+E I +P +R++ Sbjct: 170 DGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQV 229 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ PAI +A + D V + +A ++ + + +V + A+ IL Sbjct: 230 ALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRILATS 289 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A +IVF TR++ L E +SG+++Q+ER ++ +R G V +ATD Sbjct: 290 DADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVATD 349 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361 VAARG+D+ + LV++ ++ E +HR GRTGRAGR G +V FV P R + F Sbjct: 350 VAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHE---RGKLKFI 406 Query: 362 EANVSVVWE----PAP 373 E + V E P+P Sbjct: 407 ENTIKVSLEEIDIPSP 422 >gi|149914601|ref|ZP_01903131.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b] gi|149811394|gb|EDM71229.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b] Length = 511 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/349 (34%), Positives = 192/349 (55%), Gaps = 13/349 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY + T +Q + P L +D+L AQTG+GKT +F L + S L Sbjct: 11 PKVL-KAVEEAGYTDPTPIQAGAIPPALEGRDILGIAQTGTGKTASFTLPMLSLLARGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDTYSKNLKLTKALLIGGVSFKEQDKLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ FSA Sbjct: 127 LICTPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTFFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR---DNAIVNILRY--- 241 T++P I + + ++ VR+ +A + I+ V+ S R D+ +ILR Sbjct: 187 TMAPEIERITNTFLQNPVRIEVARQATASETIEQGVVMFKPSRRERADSEKRDILRAIID 246 Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 NAIVFC+ + V +K L +H + + G+L Q +R+ L R G ++ Sbjct: 247 AEGEACTNAIVFCNRKVDVDIVSKSLKKHGYDAAPIHGDLDQSQRTRTLDGFRAGDLKIL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +A+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGR G ++ + Sbjct: 307 VASDVAARGLDVPSVSHVFNYDVPGHAEDYVHRIGRTGRAGRSGKAMMI 355 >gi|319902651|ref|YP_004162379.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] gi|319417682|gb|ADV44793.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P 36-108] Length = 422 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 185/344 (53%), Gaps = 6/344 (1%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ + I +AL E GY T +QE + L+ KD+L AQTG+GKT AF + + Sbjct: 3 FENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L ++R AL + PTRELA+Q+G E TG+ V GGV + DL Sbjct: 63 LYKTDNR----KGIKALILTPTRELAIQIGESFEAYGKYTGLKHTVIFGGVGQKPQTDDL 118 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I++ TPGRL D + +N+ L VLDEAD MLD+GF DI IL P +R+ Sbjct: 119 KRGTQILIATPGRLQDLVNQGFINLKTLDFFVLDEADRMLDMGFIHDIRRILKMLPTQRQ 178 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ I TLA + + +V + + I V ++ + ++++L+ Sbjct: 179 TLFFSATMPSEIETLANSMLSNPAKVEVTPVSSTVDTISQSVYFVEKKEKKDLLIHLLKN 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ +VF T+ + ++L++ A+ G SQ R AL + RV IAT Sbjct: 239 TAIESVLVFTRTKYGADKLARILSKSGISAEAIHGNKSQNARQRALTGFKSHTIRVLIAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+AARGID+ L VI+ EL + PE +HR GRTGRAG +G ++ Sbjct: 299 DIAARGIDVEQLSHVINYELPNVPETYVHRIGRTGRAGHEGTAL 342 >gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii] gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii] Length = 641 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 125/380 (32%), Positives = 214/380 (56%), Gaps = 12/380 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 + Q I L++RG +L +Q A+ P ++ D++ A+TG+GKT+AFG+ + + Sbjct: 27 GVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIMDRIYRS 86 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + P AL +APTRELA QV E E++ + + GGVS+ ++R L Sbjct: 87 RSKSQRRSFRGPAALVLAPTRELAKQV--ETEFMESGKELATVCVYGGVSIMSQKRLLSR 144 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G + VGTPGR+ D + L++S ++ +VLDEAD+ML +GF +D+E I++ P+KR+ + Sbjct: 145 GVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLPEKRQNM 204 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT+ + L++ + + +++ E+ + I AV + + + + +++ Sbjct: 205 LFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRKILSDVITV 264 Query: 242 HG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +G IVF T+ + + L AL G+++Q +R L R+GR + +A Sbjct: 265 YGKGGKTIVFTQTKRDAEEVSMAMNRTL-GCEALHGDIAQFQREKTLAAFREGRFLILVA 323 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359 TDVAARG+D+ D++L+IH +L + E +HRSGRTGRAG+ G + VF PQ +RR + Sbjct: 324 TDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQ--ERRILKH 381 Query: 360 F-REANVSVVWEPAPSVEAI 378 F R+ S ++ P + + Sbjct: 382 FERQVGCSFQFKSMPHFDEV 401 >gi|300692069|ref|YP_003753064.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant RNA helicase(C-terminal) (rhlE-like) [Ralstonia solanacearum PSI07] gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant RNA helicase(C-terminal) (rhlE-like) [Ralstonia solanacearum PSI07] Length = 614 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 144/385 (37%), Positives = 203/385 (52%), Gaps = 37/385 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND------ 67 AL E Y T VQ + L D+LV++QTGSGKT AF L + + + Sbjct: 44 ALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISEQPEPQRPRA 103 Query: 68 ------------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108 R SPA P L + PTRELA+QV GR L +V A Sbjct: 104 DGPPQRVKGRRPRPSPAK-PSLLVLTPTRELALQVTTAASQYGRHLRR------IVCASI 156 Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 +GG+ ++ L I++ TPGRL DHI +++S L +V DEAD MLD+GF DD Sbjct: 157 LGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADD 216 Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-A 227 IE I+ ++P R+MLMFSAT+ I LA+ +D R+ IA+ S+I+ R Sbjct: 217 IEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIAAAKIDQSNIEERLHFTDD 276 Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 LS + + ++LR K AIVF +T+ + L E F AL G++ Q R+ L Sbjct: 277 LSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTL 336 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +R G+ RV +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ + Sbjct: 337 TALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINL 396 Query: 348 IPQN---MQRRAERLF-REANVSVV 368 + RR ER R + +VV Sbjct: 397 VNHGDTFQWRRIERFVDRRIDATVV 421 >gi|58584965|ref|YP_198538.1| superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419281|gb|AAW71296.1| Superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 408 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 128/350 (36%), Positives = 196/350 (56%), Gaps = 9/350 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ +AL + + T VQ + L+ KD+L SAQTG+GKT+AF + L + LL E Sbjct: 9 LPLLLAQALDKNSFSVPTPVQAQAIPLALKGKDILGSAQTGTGKTLAFAIPLIAKLLGE- 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125 +A AL I PTRELA QV E+ L K V+ +A+ IGG + R+ LQ Sbjct: 68 -----PNASTALVIVPTRELAQQVTNEIGKLLLKNSVLKIALLIGGEPIFRQLNQLQRRP 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+GTPGR+ DHI K L +++ +VLDE D M D+GF IE I+ PK R+ LMF Sbjct: 123 RIVIGTPGRIIDHIERKTLITNNVSTLVLDEVDRMFDMGFGIQIEGIMKYLPKMRQNLMF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA+ Y RV++ +E I + + S++ +V L Y Sbjct: 183 SATLPGDIVKLAEKYSNQPERVSVENEATTSVKIKQEIIYASESEKYGKLVTQL-YQRKG 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + IVF T+ + L + +A+ G+L Q++R + R G ++ +ATDVA+ Sbjct: 242 SIIVFVRTKQRADQLAYKLRKDNHSALAIHGDLKQRKRKRVINSFRRGHNQIMVATDVAS 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 RG+D+P ++ VI+ + + N +HR+GRT RAG +G ++ F+ Q+ +R Sbjct: 302 RGLDIPHIQHVINYDAPESQANYIHRTGRTARAGAEGYALSFITSQDKKR 351 >gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1] gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1] Length = 482 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/344 (36%), Positives = 189/344 (54%), Gaps = 7/344 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I L +G ++QE L+ L+ D++ A+TGSGKT+AFG+ + ++ DR Sbjct: 5 ICAPLERKGITTPFAIQEMTLSVALQGTDLIGQARTGSGKTLAFGIPVVQRSVSPKDRDY 64 Query: 71 ---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P P AL +APTRELA+QV E+ + G+ V GG + L+ G I Sbjct: 65 IDLPQGKPQALIVAPTRELAMQVSAEISMISEDRGLRVLTVYGGAGYEPQIEALEKGVDI 124 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGRL D K L++SH+ A+VLDEADEMLDLGF D+E ++ +P+ R+ L+FSA Sbjct: 125 VVGTPGRLIDLANRKVLDLSHVHALVLDEADEMLDLGFLPDVEKLVTLTPETRQTLLFSA 184 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGA 244 T+ AI LA++Y + + + S + + + A V + D+ I +L+ Sbjct: 185 TMPGAIVALARSYMRHPMNIRAESAAERET-VPATAQFVYQAHDLDKPEMIGRLLQCEDH 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ R LAE F L G++ Q R +Q RDG+ V +ATDVA Sbjct: 244 DKVVVFARTKRQAQRVADDLAERGFPASPLHGDMQQAARERVMQKFRDGKVEVLVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + V++ + + +HR GRTGRAG G++V ++ Sbjct: 304 ARGIDVTGVSHVVNYTTPDDEKTYVHRIGRTGRAGASGVAVTLV 347 >gi|188532510|ref|YP_001906307.1| ATP-dependent RNA helicase DeaD [Erwinia tasmaniensis Et1/99] gi|188027552|emb|CAO95399.1| Cold-shock DEAD-box protein A [Erwinia tasmaniensis Et1/99] Length = 636 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 206/372 (55%), Gaps = 12/372 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E+L+ GYV + +Q + L +DVL AQTGSGKT AF L L + P Sbjct: 22 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 74 Query: 73 -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP L +APTRELAVQV + ++ G+ V GG + R L+ G +VVG Sbjct: 75 VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 134 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ L++S+L+ +VLDEADEML +GF +D+E I+ P + +FSAT+ Sbjct: 135 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALFSATMP 194 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI + K + KD V I S DI ++ A + +A+ L AI+F Sbjct: 195 EAIRRITKRFMKDPQEVRIQSSLTTRPDIS-QSYWTAYGRKTDALTRFLEAEDFDAAIIF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 254 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVW 369 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR R + R +++ Sbjct: 314 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIPE 372 Query: 370 EPAPSVEAIRER 381 P+ E + ER Sbjct: 373 VELPNAELLGER 384 >gi|121486020|gb|ABM54889.1| ATP-independent RNA helicase [Escherichia coli] Length = 437 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 203/369 (55%), Gaps = 12/369 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + AL Sbjct: 2 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------AL 55 Query: 79 AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL Sbjct: 56 VLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLL 114 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI + Sbjct: 115 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 174 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 + Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 175 SGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLRRLLSLHQPSSCVVFCNTKKD 233 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ LELV Sbjct: 234 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 293 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSV 375 ++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ Sbjct: 294 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPAN 352 Query: 376 EAIRERDAQ 384 +I +A+ Sbjct: 353 SSIVTLEAE 361 >gi|212633675|ref|YP_002310200.1| DEAD box helicase [Shewanella piezotolerans WP3] gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3] Length = 482 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 189/360 (52%), Gaps = 17/360 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++ +GY + +Q + L KDV+ +AQTG+GKT F L L L N + Sbjct: 12 ILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSKGNK--A 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PA AL + PTRELA QVG +E + AV GGV + + L G I+V Sbjct: 70 PAKQVRALVLTPTRELAAQVGESVEIYGKNLPLKSAVIFGGVGIGPQISKLSRGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + +N S L+ +VLDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 130 TPGRLLDLYNQRAVNFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V + + +V +++ H + +VF Sbjct: 190 DDIRKLAKGLVNNPVEISVTPRNATANTVKQWICPVDKGQKASVLVKLIKQHDWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 250 SRTKHGANRLAKNLDAKGITAAAIHGNKSQGARTKALAEFKSGDVRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRR 355 L V++ +L + PE+ +HR GRTGRAG G +V +I QN++RR Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDEEIKLLRDIELLIKQNLERR 369 >gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123643052|sp|Q49Z29|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802 gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 506 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 119/344 (34%), Positives = 193/344 (56%), Gaps = 9/344 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + E L G+ T +Q+ + L KDVL AQTG+GKT AFG+ L ++ + Sbjct: 13 MAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLI-------EKVA 65 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +L +APTRELA+QV L+ + V GG+ + R+ + L+ G IVVG Sbjct: 66 DQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQIVVG 125 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATI 189 TPGR+ DH+ + L + + ++LDEADEM+++GF DD++FI+D P ++R+ ++FSAT+ Sbjct: 126 TPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTMLFSATM 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI TL + + K V V + I+ +V ++ + + L H + AIV Sbjct: 186 PKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTSFLDVHQPELAIV 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D Sbjct: 246 FGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLD 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + + V + ++ + E+ HR GRTGRAG+KG+++ FV P M Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEM 349 >gi|325001026|ref|ZP_08122138.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1] Length = 416 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 197/360 (54%), Gaps = 5/360 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + ++L+ +G+ VQ A L L +D+L QTGSGKT+AFGLAL + + + Sbjct: 10 GLPEALVKSLAAQGFTAPFPVQAATLPDTLAGRDLLGRGQTGSGKTLAFGLALLARIAGD 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R ++APL L + PTRELA QV L L A + V +GG+S++++ +L+ G Sbjct: 70 RAR---STAPLGLVLVPTRELAGQVVDVLTPLAAAVNLRVTAVVGGLSMNKQVAELRRGI 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH++ ++S + LDEAD M D+GF + ILD +P + L+F Sbjct: 127 DLLVATPGRLTDHLQQGTCDLSEVTITALDEADRMADMGFLPQVRGILDRTPSDGQRLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + TL + + D V ++A +++ ++V DR I I G Sbjct: 187 SATLDGEVDTLVRRHLTDPVTRSVAPPTASVDTMEHHVLVVGKDDRSRVIAEIAAREG-- 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ R +VL L G SQ +R+ AL R G V IATDVAA Sbjct: 245 RTIMFVRTKHGADRMVRVLRRQGVAAGPLHGGRSQNQRNRALDEFRTGEVPVLIATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LV+H + ++P+ LHR+GRT RAG +G+ V + + + L ++A V Sbjct: 305 RGIHIDDVGLVVHVDPPADPKAYLHRAGRTARAGEEGVVVTLSAPEQRAEVDLLTKQAGV 364 >gi|260204506|ref|ZP_05771997.1| hypothetical protein MtubK8_09388 [Mycobacterium tuberculosis K85] gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85] gi|289538344|gb|EFD42922.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85] Length = 563 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 171/539 (31%), Positives = 277/539 (51%), Gaps = 54/539 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ + GY + T++Q A + + DV+ AQTG+GKT AF + + S + + Sbjct: 22 PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79 Query: 68 RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P AL + PTRELA+QV GR +L + + V GG S + L+ Sbjct: 80 -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DH+ L++S + +VLDEADEML +GF DD+E IL +PK +++ Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPKYKQVA 191 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ PAI L+ Y D V ++ +I + VA + +A+ +L Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEP 249 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ + + L F A+SG++ Q +R + +RDG + +ATDV Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360 AARG+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ + + E+ Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412 R+ ++ P+VE + + QR+ + F DSI G E +++V+ +HD Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRVAK---FADSITNALGGPGIELFRRLVEEYEREHD 420 Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 IAA R G L AP+ P+S + R R + R + + Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 + ++VG + K ++ + G++R G IR+ PD + VE+ A L R T+K Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526 >gi|310767698|gb|ADP12648.1| ATP-dependent RNA helicase DbpA [Erwinia sp. Ejp617] Length = 459 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 141/390 (36%), Positives = 211/390 (54%), Gaps = 21/390 (5%) Query: 1 MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 M F + Q+ + L+E GY+ +T VQ L L +DV A+TGSGKT AFGL Sbjct: 1 MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 + + A AL + PTRELA QV +EL L + ++ +C GG V Sbjct: 61 VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLC-GGQPVG 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 +R L + HIVVGTPGR+ DH++ + L + + +VLDEAD ML++GFR+DI+ I+ Sbjct: 114 AQRDSLLHAPHIVVGTPGRILDHLKRETLKLGAINTLVLDEADRMLEMGFREDIDTIISH 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRD 232 SP+ R+ L+FSAT AI ++++ Q+D + + E SD I+ ++ Sbjct: 174 SPQARQTLLFSATWPQAIAQISQSIQRDPLTI----ETGDVSDLPAIEQTFYEAGAREKL 229 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 A++ +L + +VFC+T+ L + L G+L Q+ER L + Sbjct: 230 TALIGLLSERQPSSCVVFCNTKRECDEIAYALDKAQISAQPLHGDLEQRERDQMLIRFAN 289 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 G RV +ATDVAARG+D+ L LV++ +LS +PE +HR GRT RAG++G +V FV P Sbjct: 290 GSCRVLVATDVAARGLDIKALALVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDE 349 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRER 381 M RA L +VW +++A+ R Sbjct: 350 M-IRAHALEDYLQQKLVWCNLSALKAVAAR 378 >gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32] gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32] Length = 443 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 6/337 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N +I A+ E GYV T +Q + P + KDV+ AQTG+GKT AF L + L+ Sbjct: 7 NFHPLISAAVKEAGYVTPTPIQTQAIPPVMDGKDVMGLAQTGTGKTAAFVLPILQRLME- 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AL IAPTRELA Q+ + L +T + A GGV+++ + + L+NG Sbjct: 66 ----GPRGRVRALIIAPTRELAEQIHEAITVLGQQTRLKSATVYGGVNINPQIQKLRNGV 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL DH+ + +++SHL+ +VLDEAD+M D+GF DI IL PKKR+ L+F Sbjct: 122 EIVVACPGRLLDHMGQRTIDLSHLEVLVLDEADQMFDMGFLPDIRRILGQLPKKRQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P I LA + V V + S +++ V+ + ++ +LR+ + Sbjct: 182 SATMPPDIKRLAGEILHNPVTVQVGS-TAPPVTVNHAIYPVSQHLKTPLLLELLRHTDKQ 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ R + L + ++ +L G LSQ R AL RDG ++ +ATD+AA Sbjct: 241 SVLVFTKTKHRAKRVGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGSFQILVATDIAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 RGID+ + V++ +++ E +HR GRTGRA R G Sbjct: 301 RGIDVTQISHVVNYDITDKAETYIHRIGRTGRASRSG 337 >gi|159045255|ref|YP_001534049.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12] gi|157913015|gb|ABV94448.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12] Length = 434 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 188/339 (55%), Gaps = 2/339 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ + + T +Q + L +DVL AQTG+GKT AFGL L L+ + +P + Sbjct: 12 LAAQNITDPTPIQTRAIPHGLNGRDVLGIAQTGTGKTAAFGLPLLDALMKAGTKPAPRTC 71 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 L +APTREL Q+ L + + + V +GGV++ + + + GA ++V TPGR Sbjct: 72 -RGLILAPTRELVSQICESLRAFTEGSHLKLQVIVGGVAIGPQIKRAERGADLIVATPGR 130 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D + K L +S + +VLDEAD+MLDLGF + I P +R+ ++FSAT+ + Sbjct: 131 LIDLLDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTMLFSATMPKQME 190 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 L++ Y D RV +A + I V + ++++L H + A+VF T+ Sbjct: 191 ELSRAYLTDPARVEVAPPGKIADKITQSVHFVEQGAKTQLLIDLLGNHRDELALVFSRTK 250 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 R + L+ F+ A+ G SQ +R AL+ R+G +V +ATDVAARGID+PD+ Sbjct: 251 HGADRLARKLSNAGFETAAIHGNRSQGQRERALKAFREGTLKVLVATDVAARGIDIPDVR 310 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + +L + PEN +HR GRT RAGR G +V F P+ M Sbjct: 311 FVYNFDLPNVPENFVHRIGRTARAGRDGQAVAFCAPEEM 349 >gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium intracellulare ATCC 13950] Length = 567 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 162/521 (31%), Positives = 269/521 (51%), Gaps = 34/521 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ A+++ GY + T +Q A + + DV+ AQTG+GKT AF + + L++ D Sbjct: 22 PSVL-RAVADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPI----LSKID 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 S A+ AL +APTRELA+QV A + + I GG S + L+ GAH Sbjct: 77 VTSTATQ--ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYSVQLAGLRRGAH 134 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L++SH+ +VLDEADEML +GF ++++ IL +P+ +++ +FS Sbjct: 135 VVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFS 194 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ PAI L Y D + V+ ++ +I R + VA + +A+ +L + Sbjct: 195 ATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEA 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + + L F A++G++ Q +R + ++DG + +ATDVAAR Sbjct: 255 MIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKDGSIDILVATDVAAR 314 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANV 365 G+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ +R + +A Sbjct: 315 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPR--ERHLLKAIEKATR 372 Query: 366 SVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPE-- 414 + E A P+VE + +AQR+ + F DSI +K+V +HD Sbjct: 373 QTLTETALPTVEDV---NAQRVAK---FADSITTALGAPGIDLFRKLVQDYEREHDTPMA 426 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474 IAA R G EE ++ +R + R + + + ++VG Sbjct: 427 DIAAALALQSRDG----EEFL-MAPEPPPERRERRTERRDRPEKPRST-RPFATYRIAVG 480 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + K ++ + G++R G I + PD + VE+ A Sbjct: 481 KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPA 521 >gi|254172736|ref|ZP_04879410.1| cold-shock deAd box protein a [Thermococcus sp. AM4] gi|214032892|gb|EEB73720.1| cold-shock deAd box protein a [Thermococcus sp. AM4] Length = 392 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 201/360 (55%), Gaps = 17/360 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLV--SAQTGSGKTVAFGLALASTLLAENDRFS 70 EA+ +G+ T +Q ++ P L E DV + +QTG+GKT AF L + + Sbjct: 14 EAVKRKGFETPTDIQREVI-PRLLEGDVDIIGQSQTGTGKTAAFALPIIEAI-------D 65 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P + A+ + PTRELA+QV E++ L K V V GG + + R L+ G H+VV Sbjct: 66 PKEKTVQAIILTPTRELALQVADEIKSLRGKKRVYVYAIYGGQPIGPQIRALERGVHVVV 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++S ++ VLDEAD MLD+GF DDIE I+ +P+++R+LMFSAT+ Sbjct: 126 GTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPEEKRILMFSATM 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNA 247 I LAK Y ++ V ++ + +D V V + + + +L ++G Sbjct: 186 PMGILLLAKKYMRNPEVVLVSRDEIVPEMVDQEYVEVLPARKYEKLKEVLEEGFYG---- 241 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ ++ L F+ AL+G++SQ R ++G+ V +ATDVAARG Sbjct: 242 IIFCHTKRETRELSERLRRDGFRADALNGDMSQAARERTFNRFKEGKINVLVATDVAARG 301 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ ++ VI+ L NPE +HR GRTGR G++G ++ + R + R+A V V Sbjct: 302 LDVREISHVINYSLPMNPEQYIHRIGRTGRMGKRGKAITFLEPGEIGRFRGIARKARVEV 361 >gi|118497286|ref|YP_898336.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis subsp. novicida U112] gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella tularensis subsp. novicida FTE] gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida U112] gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis subsp. novicida FTE] Length = 569 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + LA D Sbjct: 16 QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + E + CI GG + R L+ G Sbjct: 76 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD++F+L + + L+FS Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S T L ++V A++G++ Q +R + R ++ + +ATDV AR Sbjct: 251 VIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353 >gi|225011497|ref|ZP_03701935.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium MS024-2A] gi|225004000|gb|EEG41972.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium MS024-2A] Length = 415 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 183/335 (54%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL ++GY T +QE + L+ D+L AQTG+GKT AFG+ + + LL EN+ Sbjct: 12 ILKALEKQGYTQPTPIQEQAIPILLKGHDLLGVAQTGTGKTAAFGIPILNHLLKENNSGQ 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA+Q+ T + V GGV ++ LQ G I+V Sbjct: 72 GKRKIKALVVTPTRELAIQIAENFTDYSQFTHLRNTVIFGGVKQSKQVASLQQGVDILVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + LK VVLDEAD+MLD+GF D++ I+ P R+ L FSAT+ Sbjct: 132 TPGRLLDLMNQGYITFRDLKYVVLDEADQMLDMGFIHDVKKIIAKLPPNRQSLFFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L++ D RV I E + V+ +++ N ++++L + +VF Sbjct: 192 KTIVELSQKMLGDFERVTIKPEQATAEKVKQGVYFVSKNNKPNLLIHLLDQRPQDSVLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ K L + + A+ G SQ +R AL +DG +V IATD+AARGID+ Sbjct: 252 SRTKHGANKIVKTLDKAKIKSAAIHGNKSQAQRQKALGEFKDGSLKVLIATDIAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DL LVI+ +L + E +HR GRTGRA G+++ Sbjct: 312 DDLALVINYDLPNVSETYVHRIGRTGRASASGIAL 346 >gi|290511539|ref|ZP_06550908.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55] gi|289776532|gb|EFD84531.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55] Length = 659 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 203/373 (54%), Gaps = 9/373 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + E Sbjct: 33 ILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 87 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 88 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 146 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248 AI + + + K+ V I S DI ++ A R N A+V L AI Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 265 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 266 IFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 325 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 326 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 385 Query: 369 WEPAPSVEAIRER 381 P+ E + +R Sbjct: 386 EVELPNAELLGKR 398 >gi|288935786|ref|YP_003439845.1| DEAD/DEAH box helicase [Klebsiella variicola At-22] gi|290509812|ref|ZP_06549183.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55] gi|288890495|gb|ADC58813.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22] gi|289779206|gb|EFD87203.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55] Length = 457 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 10/366 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+++T VQ A L L KDV V A+TGSGKT AFGL L + + RF S Sbjct: 18 LNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV EL L + + + GG +R LQ+ HI+V TPG Sbjct: 75 ---LVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ +++ L+ +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++ Q++ + I + + + I+ + V+ + + +L H + +VFC+T Sbjct: 192 AAISGRVQRNPQTIEIDTVDALPA-IEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L ++L G+L Q++R L +G RV +ATDVAARG+D+ L Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372 LV++ EL+ +PE +HR GRT RAG +G+++ F P+ Q RA L +S+ W PA Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369 Query: 373 PSVEAI 378 P+ I Sbjct: 370 PTGNTI 375 >gi|238758478|ref|ZP_04619655.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236] gi|238703382|gb|EEP95922.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236] Length = 457 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 201/365 (55%), Gaps = 14/365 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L+E GY +T VQ A L L +DV A+TGSGKT AFG+ L D+ + Sbjct: 16 LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 68 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA QV +EL L + + ++ +C GG + + L + HIVVGT Sbjct: 69 VTQALILCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R K L + LK +VLDEAD MLD+GF D I+ ++ +P +R+ L+FSAT Sbjct: 128 PGRIQEHLRKKTLVLDELKILVLDEADRMLDMGFTDAIDDVIAYTPVQRQTLLFSATYPA 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++ Q++ + V + + + I+ R ++++L ++ + +VFC Sbjct: 188 GIERISARVQREPLNVEV-DDGDEEPAIEQVLFETTREKRLPLLISVLSHYQPDSCVVFC 246 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q++R L + RV +ATDVAARG+D+ Sbjct: 247 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANHSCRVLVATDVAARGLDIK 306 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 DL LV++ EL+ +PE +HR GRTGRAG G++V PQ M RA + + + W Sbjct: 307 DLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQIKLKWT 365 Query: 371 PAPSV 375 A + Sbjct: 366 SAEQI 370 >gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG] gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548] gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548] gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG] Length = 569 Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + LA D Sbjct: 16 QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + E + CI GG + R L+ G Sbjct: 76 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD++F+L + + L+FS Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S T L ++V A++G++ Q +R + R ++ + +ATDV AR Sbjct: 251 VIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353 >gi|229072918|ref|ZP_04206114.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185] gi|228710164|gb|EEL62142.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185] Length = 481 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 198/370 (53%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAIRERDA 383 S E + + A Sbjct: 372 SKEEVMKEKA 381 >gi|320664062|gb|EFX31249.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str. LSU-61] Length = 457 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 202/372 (54%), Gaps = 10/372 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGK AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKMAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 LELV++ EL+ +PE +HR GRT RAG G+++ +RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCATEEAQRANIISDMLQIKLNWQTP 369 Query: 373 PSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 370 PANSSIVTLEAE 381 >gi|320451062|ref|YP_004203158.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01] gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01] Length = 521 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 126/330 (38%), Positives = 184/330 (55%), Gaps = 12/330 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F++ P I EAL RG T +Q A L L KD++ A+TG+GKT+AF L +A Sbjct: 3 FKDFPLKDEIKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQG 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L A +R P AL + PTRELA+QV EL+ + VV GG +++ +L Sbjct: 63 LEASKER---GRLPRALVLTPTRELALQVSGELQAVAPHLKVV--TVYGGTGYGKQKEEL 117 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G +VV TPGR D++R L++S ++ VLDEADEML +GF +++E IL ++PK+R+ Sbjct: 118 TRGCDVVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLSMGFEEEVEAILSATPKERQ 177 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILR 240 L+FSAT+ LA+ Y K V +N+ E I Y+ + A DR + + ++L Sbjct: 178 TLLFSATLPSWARKLAERYMKSPVVINVVREE----GITYQEEAIPAPGDRLSLLSDVLF 233 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 K AIVF T+A L A+ G+LSQ +R ++ R+G RV +A Sbjct: 234 VKAPKRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAFREGEVRVLVA 293 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLH 330 TDVAARG+D+P+++LV+H PE H Sbjct: 294 TDVAARGLDIPEVDLVVHYRFPDKPETYQH 323 >gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13] gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13] Length = 465 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 139/399 (34%), Positives = 217/399 (54%), Gaps = 33/399 (8%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAE 65 +I +AL++ Y T VQE + + KD+LVS+QTGSGKT AF L AS + Sbjct: 11 LIQKALADIHYDKPTPVQEKAIPAGIEGKDLLVSSQTGSGKTAAFMLPALHRFASVPFEK 70 Query: 66 ND------------------RFSPASAPLALAIAPTRELAVQVGRELE--WLYAKTGVVV 105 +D R+ PA P L + PTRELA+Q+ + E Y K V Sbjct: 71 SDKKTFNQKRQAARAKGEKVRYEPAH-PKMLVLTPTRELAMQIVQSSEDYSAYLKHFRTV 129 Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165 A+ +GG+ ++ + L I+V TPGRL DH+ + L+ +VLDEAD MLD+GF Sbjct: 130 AI-LGGMPYPKQMQLLAKNPEILVATPGRLIDHMHSGKIRFDQLEILVLDEADRMLDMGF 188 Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225 DDIE I+ ++P+ R+ ++FSAT+ + +A+ +D ++I S +H +ID Sbjct: 189 IDDIETIIAATPETRQTMLFSATLDGIVGNMARKITRDPELIHIHSVASRHENIDQMIHF 248 Query: 226 VA-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284 V L ++ + ++L A+VF +T+ LA F AL G++ Q R+ Sbjct: 249 VDDLPHKNRLLDHLLHDRSLDQALVFTATKRDADIVADRLAIAGFSAAALHGDMPQGARN 308 Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 L +R G+ ++ +ATDVAARGID+P++ V++ +L PE+ +HR GRTGRAGR G++ Sbjct: 309 RTLTKLRRGQVKILVATDVAARGIDIPNITHVVNYDLPKFPEDYVHRIGRTGRAGRHGLA 368 Query: 345 VFVIPQNMQ---RRAERLFREA---NVSVVWEPAPSVEA 377 + ++ N R+ ER +++ NV +EP S +A Sbjct: 369 ISLVNHNDNNNVRKIERFTKQSIPVNVIEGFEPKLSFKA 407 >gi|332305039|ref|YP_004432890.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172368|gb|AEE21622.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 459 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 197/358 (55%), Gaps = 12/358 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L G+ +T +Q L L +DV+ A+TGSGKT AFGLAL L + R Sbjct: 18 LQSMGFSQMTDIQADTLPAILSGRDVVAKAKTGSGKTAAFGLALLHNLDVKRFRVQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV E+ L A + V GG + + L++GAHI+VGTPG Sbjct: 74 --ALVMCPTRELAEQVALEIRRLGRAIHNIKVLTLCGGTPMGPQIGSLEHGAHIIVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ + L++S + +VLDEAD MLD+GF D+++ ++ S P +R+ L+FSAT +I Sbjct: 132 RIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPAQRQTLLFSATYPESI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIVFC 251 ++ QKD + V + S H + V + D R A +L ++ ++AIVFC Sbjct: 192 AAISGQVQKDPLEVTVES---THDTDSIQQVFFEVDDAHRTKATAALLSHYQPESAIVFC 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L V+AL G+L Q+ER+ L + V +ATDVA+RG+D+ Sbjct: 249 NTKIACQEVADSLQSLGVSVLALHGDLEQRERNQVLVRFANKSVSVLVATDVASRGLDIK 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 ++ VI ++ +PE +HR GRTGRA KG+++ ++ + RA + + W Sbjct: 309 EVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEVARANAIEDYQKAKLKW 366 >gi|253991496|ref|YP_003042852.1| ATP-dependent RNA helicase DeaD [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638374|emb|CAR66996.1| cold-shock dead box protein a (ec 3.6.1.-) (atp-dependent rna helicas dead) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782946|emb|CAQ86111.1| cold-shock dead box protein A [Photorhabdus asymbiotica] Length = 635 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 165/550 (30%), Positives = 266/550 (48%), Gaps = 32/550 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY + +Q+ + L +DVL AQTGSGKT AF L L + AE Sbjct: 26 ALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNINAE------LK 79 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV ++ V V GG + R L+ G IVVGTP Sbjct: 80 APQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRALRQGPQIVVGTP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + + +FSAT+ A Sbjct: 140 GRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEA 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + D V I + DI V ++ A+V L AI+F Sbjct: 200 IRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVR 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 260 TKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 320 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVEL 379 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRIHRA 426 P+ E + +R ++ + ++ + LL+K P E +AA L++ + Sbjct: 380 PNAELLSQRRLEKFAAN--VQQQLESSDLDQYRALLSKLQPAEDLDIETLAAALLKMAQG 437 Query: 427 GLCAPEEITPVSLVSGRDRF--RDDSR--AFKVGGGSRDNFKGS-------SWFSLSVGS 475 P + P + R F RDD R F G D + + + VG Sbjct: 438 E--RPLILPPDPVRRPRREFNERDDRRRNGFDDRGERGDRPRRERRDVGEMELYRIEVGR 495 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGI 531 E R ++ + I+ + IG I++ + +E+ D + RT L+K + Sbjct: 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLLSHFTRTRILNKPM 555 Query: 532 QLKYLGGEKP 541 ++ +G +P Sbjct: 556 NMQLMGDAQP 565 >gi|206579682|ref|YP_002236428.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342] gi|288933410|ref|YP_003437469.1| DEAD/DEAH box helicase [Klebsiella variicola At-22] gi|206568740|gb|ACI10516.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342] gi|288888139|gb|ADC56457.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22] Length = 643 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 203/373 (54%), Gaps = 9/373 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + E Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 72 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248 AI + + + K+ V I S DI ++ A R N A+V L AI Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+ Sbjct: 250 IFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 310 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369 Query: 369 WEPAPSVEAIRER 381 P+ E + +R Sbjct: 370 EVELPNAELLGKR 382 >gi|54301892|ref|YP_131885.1| ATP-dependent RNA helicase DbpA [Photobacterium profundum SS9] gi|46915312|emb|CAG22085.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum SS9] Length = 462 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 213/379 (56%), Gaps = 12/379 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY ++T +Q L L +DV+ +TGSGKT AFGL L L + R Sbjct: 19 LTSLGYESMTPIQALSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEKLNVKRFRVQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QV +E+ L A+T + V GG+ + L++GAHI+VGTP Sbjct: 75 --SLVLCPTRELADQVAKEIRKL-ARTIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ +H+R LN+ L+ ++LDEAD ML++GF+D ++ I+D++P++R+ L+FSAT P Sbjct: 132 GRIEEHVRKGTLNLDDLEILILDEADRMLEMGFQDSLDEIIDAAPQRRQTLLFSATYPPQ 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++A V + S + + + + + R A+ +L H ++ +VFC+ Sbjct: 192 IKSVADRIMHKPVMAKVESTHDESTIQQHFYKVDGNEQRLTALRLLLLKHRPESTVVFCN 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L ++ F +AL G+L Q+ER AL + + V +ATDVAARG+D+ Sbjct: 252 TKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVLFANKSTSVLVATDVAARGLDIDS 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+ VI+ L+ + E +HR GRTGRAG KG++ +I + L + ++ EP Sbjct: 312 LDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLISDKEHYKVAMLEDYLDRAISGEPL 371 Query: 373 PSVEAIRE---RDAQRILQ 388 PS++ + + R A LQ Sbjct: 372 PSMDLLDQPTFRPAMTTLQ 390 >gi|229176129|ref|ZP_04303622.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3] gi|228607364|gb|EEK64693.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3] Length = 481 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTMIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + E P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFITPYENRFLEEIEEYIGFEIPKELTP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|33594279|ref|NP_881923.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS] Length = 477 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 123/342 (35%), Positives = 195/342 (57%), Gaps = 2/342 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPAS 73 +++ GY N T +Q + + +DV+ +AQTG+GKT AF L + L+ N SPA Sbjct: 32 IADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASPAR 91 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QV ++ T + AV GGV + ++ L+ G ++V TP Sbjct: 92 HPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATP 151 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K +N+S + +VLDEAD MLD+GF D+E I+ P +R+ L+FSAT S Sbjct: 152 GRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNE 211 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L ++Y V + +A+ N + A + + A+V++++ G K IVF + Sbjct: 212 IRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHLVKSRGLKQVIVFSN 271 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L + ++ G+ +Q +R AL+ + G V +ATDVAARG+D+ Sbjct: 272 TKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVATDVAARGLDVAG 331 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ +L N E+ +HR GRTGRAG G ++ + + +R Sbjct: 332 VPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEER 373 >gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii] gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii] Length = 640 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 125/380 (32%), Positives = 214/380 (56%), Gaps = 12/380 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 + Q I L++RG +L +Q A+ P ++ D++ A+TG+GKT+AFG+ + + Sbjct: 9 GVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIMDRIYRS 68 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + P AL +APTRELA QV E E++ + + GGVS+ ++R L Sbjct: 69 RSKSQRRSFRGPAALVLAPTRELAKQV--ETEFMESGKELATVCVYGGVSIMSQKRLLSR 126 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G + VGTPGR+ D + L++S ++ +VLDEAD+ML +GF +D+E I++ P+KR+ + Sbjct: 127 GVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLPEKRQNM 186 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT+ + L++ + + +++ E+ + I AV + + + + +++ Sbjct: 187 LFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRKILSDVITV 246 Query: 242 HG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +G IVF T+ + + L AL G+++Q +R L R+GR + +A Sbjct: 247 YGKGGKTIVFTQTKRDAEEVSMAMNRTL-GCEALHGDIAQFQREKTLAAFREGRFLILVA 305 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359 TDVAARG+D+ D++L+IH +L + E +HRSGRTGRAG+ G + VF PQ +RR + Sbjct: 306 TDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQ--ERRILKH 363 Query: 360 F-REANVSVVWEPAPSVEAI 378 F R+ S ++ P + + Sbjct: 364 FERQVGCSFQFKSMPHFDEV 383 >gi|322614908|gb|EFY11833.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619348|gb|EFY16228.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623160|gb|EFY20002.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628449|gb|EFY25237.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634857|gb|EFY31588.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638578|gb|EFY35273.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640887|gb|EFY37535.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645384|gb|EFY41912.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651731|gb|EFY48103.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654369|gb|EFY50691.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661210|gb|EFY57436.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662662|gb|EFY58869.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667727|gb|EFY63887.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671861|gb|EFY67982.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677094|gb|EFY73158.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680244|gb|EFY76283.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685327|gb|EFY81323.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194310|gb|EFZ79506.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199386|gb|EFZ84480.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205860|gb|EFZ90823.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217187|gb|EGA01908.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323227265|gb|EGA11435.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232049|gb|EGA16156.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234576|gb|EGA18663.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238029|gb|EGA22088.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243370|gb|EGA27389.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246177|gb|EGA30162.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253678|gb|EGA37505.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259111|gb|EGA42757.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260421|gb|EGA44034.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266491|gb|EGA49978.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271215|gb|EGA54642.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 457 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 205/363 (56%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P+ R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + ++ ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSVHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|310779133|ref|YP_003967466.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM 2926] gi|309748456|gb|ADO83118.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM 2926] Length = 526 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 152/513 (29%), Positives = 250/513 (48%), Gaps = 50/513 (9%) Query: 15 LSERGYVNLTSVQ----EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 L E+G+ + +Q +LN D KDV+ AQTG+GKT AF L + ++ Sbjct: 20 LLEKGFEKPSPIQALTIPVLLNGD---KDVIGQAQTGTGKTAAFSLPIL-------EKIE 69 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 ++ + A+ +APTRELAVQV E+ L + +A GG S+ + + L+ G +VV Sbjct: 70 KSTGSIQAIVLAPTRELAVQVAEEMNSLSHGRNLRIAPVYGGQSIEFQIKQLRRGIDVVV 129 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D + K L + + +LDEADEML++GF +D+E IL ++ K +RML FSAT+ Sbjct: 130 GTPGRVIDLMNRKILKLDKIDYFILDEADEMLNMGFLEDVEMILQNTSKDKRMLFFSATM 189 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +AK + + + + + D V D+ A+ I+ IV Sbjct: 190 PKEILRVAKKHMGEHEVLAVKKTELTTNLTDQIYFEVKEKDKFEALCRIMDLELDFYGIV 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+ L + + L G++SQ R L+ ++ + V IATDVAARGID Sbjct: 250 FCRTKNDVNVLVGKLQDRGYDSEGLHGDISQNHREITLKRFKEKKINVLIATDVAARGID 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + DL VI+ + +PE+ +HR GRTGRAG++G ++ I + R+ ++ R + Sbjct: 310 VNDLSHVINYAIPQDPESYVHRIGRTGRAGKEGTAITFITPSEYRKILQIQRIVKTEIRK 369 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGFLRIH 424 E P V+ + + R+ ++ L+ I + K +M + LL P + A L Sbjct: 370 EKVPGVKEVIQAKKNRMREE---LNEILDERKYEGFQEMAEELLEGESPADVVAALLTHS 426 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----GSSWFSLSVGSKQKAE 480 L + +RD DN + G S +++G K K Sbjct: 427 YQDLL------------DENNYRD-----------IDNVQVDKTGKSRLFIALGKKDKIT 463 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + ++ M+ + + I+ I + V + +F+ V Sbjct: 464 PKKIVDMIKKKTTISEHKIKKVEVYENFSFMTV 496 >gi|215486637|ref|YP_002329068.1| ATP-dependent RNA helicase DbpA [Escherichia coli O127:H6 str. E2348/69] gi|312966726|ref|ZP_07780944.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75] gi|215264709|emb|CAS09083.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli O127:H6 str. E2348/69] gi|312288190|gb|EFR16092.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75] Length = 457 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + + F Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DVSLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --GLVLCPTRELADQVAGELRRLARFLLNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAI 378 P+ +I Sbjct: 369 PPANSSI 375 >gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c] gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c] Length = 614 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 212/374 (56%), Gaps = 13/374 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+++ GY + +Q A + L +DVL AQTG+GKT AF L L + + + Sbjct: 26 VMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK-- 83 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L +APTRELA+QV + A +G V GG S ++ L+ G H++V Sbjct: 84 ----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIV 139 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++S LK +VLDEADEML +GF +D+E +L P R++ +FSAT+ Sbjct: 140 GTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATM 199 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I +A+ Y +D + V IA++ ++I R V+ + +A+ IL I+ Sbjct: 200 PPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMII 259 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+A+ + L A++G++ Q +R + ++DG+ + +ATDVAARG+D Sbjct: 260 FVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGLD 319 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366 + + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R+ ER + + Sbjct: 320 VERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPIEA 379 Query: 367 VVWEPAPSVEAIRE 380 + PSV+A+ + Sbjct: 380 MQL---PSVDAVND 390 >gi|260549866|ref|ZP_05824082.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Acinetobacter sp. RUH2624] gi|260407116|gb|EEX00593.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Acinetobacter sp. RUH2624] Length = 486 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 211/379 (55%), Gaps = 15/379 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 35 ETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNNLAGQETF 94 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +R + P L I+PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 95 VPFKERMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFAKQIQQL 154 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + + + + A+++DEAD MLDLGF +D+E I + + +++ Sbjct: 155 K-GAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISELAANRKQ 213 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA KD +R+ I + + ++DI + + + L Sbjct: 214 TLMFSATFADRIIRLAACMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLS 273 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 274 DENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 333 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAER 358 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ + + + RA Sbjct: 334 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRERGKIRALE 393 Query: 359 LFREANVSVV----WEPAP 373 + EA +SV EP+P Sbjct: 394 EYLEARLSVSEIEGLEPSP 412 >gi|238797547|ref|ZP_04641044.1| DEAD/DEAH box helicase domain protein [Yersinia mollaretii ATCC 43969] gi|238718544|gb|EEQ10363.1| DEAD/DEAH box helicase domain protein [Yersinia mollaretii ATCC 43969] Length = 612 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 168/539 (31%), Positives = 258/539 (47%), Gaps = 47/539 (8%) Query: 44 AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TG 102 AQTGSGKT AFGL L + AE AP L +APTRELA+QV L G Sbjct: 2 AQTGSGKTAAFGLPLLHNIKAE------LKAPQVLVLAPTRELAIQVAEALSSFSKDING 55 Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162 V V GG + R L+ G IVVGTPGRL DH++ LN+S+L +VLDEADEML Sbjct: 56 VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLR 115 Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222 +GF +D+E I+ P + + +FSAT+ AI + + + KD V I S DI Sbjct: 116 MGFIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQS 175 Query: 223 AVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281 V ++ A+V L AI+F T+ + + L + AL+G+++Q Sbjct: 176 FWRVGGGYNKKEALVRFLESEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQS 235 Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341 R L ++DGR + IATDVAARG+D+ + LV++ ++ + E+ +HR GRTGRAGR Sbjct: 236 LREQTLDRLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295 Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDE 400 G ++ + +R + + R +++ P+ E + ER R+ Q + ++ + Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVQLPNAELLGER---RLAQFAAKVGQQLESSD 352 Query: 401 KKMVDVLLAKHDPEK------IAAGFLRI---HRAGLCAPEEI-TPVSLVSGR-DRFRD- 448 + LLAK PE+ +AA L++ R + PE P + R DR D Sbjct: 353 LDLYRALLAKLQPEEEFDLETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDR 412 Query: 449 -------------DSRAFKVGGGSRD------NFKGSSWFSLSVGSKQKAEARWLMPMLC 489 + RA GG R + + + VG E R ++ + Sbjct: 413 GNDRGRDRGDSRREPRADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIA 472 Query: 490 RSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544 I+ + IG I++ + +E+ + + RT L+K + ++ LG +P R Sbjct: 473 NEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 531 >gi|325271305|ref|ZP_08137840.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51] gi|324103564|gb|EGC00876.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51] Length = 461 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 205/366 (56%), Gaps = 12/366 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T +Q L L+ +D++ A+TGSGKT AFG+ L + + N R+ A Sbjct: 21 LDALGYAAMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +EL L A+ + + GGVS+ + L++GAHI+VGTPG Sbjct: 78 ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+ L + L +VLDEAD MLD+GF D I I+ +P +R+ L+FSAT I Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA ++ ++ +V + S H+D I+ R + + R A+ +L ++ ++ + FC Sbjct: 195 KQLAADFMRNPQQVKVES---LHTDNQIEQRFIEIDPEQRLEAVTRVLGHYRPQSCVAFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L AL G+L Q++R L M + + V +ATDVAARG+D+ Sbjct: 252 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ RA+ + + + W+ Sbjct: 312 GLDMVINVELARDAEIHVHRVGRTGRAGEKGLAVSLVAPAEGHRAQAIEQLQKSPLRWDQ 371 Query: 372 APSVEA 377 S+++ Sbjct: 372 LDSLKS 377 >gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697] gi|217985744|gb|EEC52085.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697] Length = 392 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 125/340 (36%), Positives = 194/340 (57%), Gaps = 3/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GYVN T +Q + L KD+L AQTG+GKT AF + + L A+ Sbjct: 27 NITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQQLQAD 86 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S ++ AL + PTRELA+Q+ ++ T V V GGV+ + L G Sbjct: 87 K---SLNNSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRTQVNMLHKGV 143 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + + +++++ VLDEAD MLD+GF DI+ +L PK+++ L+F Sbjct: 144 DILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLLF 203 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +L + K V+++I ++ I+ V ++ +++IL + Sbjct: 204 SATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVYFVEKKEKSKLLISILHKTQGQ 263 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + R +VL + A+ G SQ R +AL+ + G+ RV IATD+AA Sbjct: 264 SVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATDIAA 323 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L LVI+ +L PE +HR GRTGRAG G ++ Sbjct: 324 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTAL 363 >gi|156935688|ref|YP_001439604.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ATCC BAA-894] gi|156533942|gb|ABU78768.1| hypothetical protein ESA_03554 [Cronobacter sakazakii ATCC BAA-894] Length = 635 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 203/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + E R Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNI-DETLR-- 73 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 74 ---APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+LK +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase domain-containing protein [Xylella fastidiosa M23] gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23] gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 609 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 212/374 (56%), Gaps = 13/374 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+++ GY + +Q A + L +DVL AQTG+GKT AF L L + + + Sbjct: 20 VMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK-- 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L +APTRELA+QV + A +G V GG S ++ L+ G H++V Sbjct: 78 ----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIV 133 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++S LK +VLDEADEML +GF +D+E +L P R++ +FSAT+ Sbjct: 134 GTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATM 193 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I +A+ Y +D + V IA++ ++I R V+ + +A+ IL I+ Sbjct: 194 PPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMII 253 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+A+ + L A++G++ Q +R + ++DG+ + +ATDVAARG+D Sbjct: 254 FVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGLD 313 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366 + + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R+ ER + + Sbjct: 314 VERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPIEA 373 Query: 367 VVWEPAPSVEAIRE 380 + PSV+A+ + Sbjct: 374 MQL---PSVDAVND 384 >gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601] gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601] Length = 502 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 195/354 (55%), Gaps = 14/354 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L KDVL AQTG+GKT +F L + ++L Sbjct: 11 PKVL-KAIEEAGYETPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMITSLARGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ +K +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + + R+ +A + I+ AV S +D + ++ Sbjct: 187 TMAPEIERITNTFLSNPERIEVARQATASETIEQGAVFFKGSRKDREGSEKRTVLRQLID 246 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAIVFC+ + V K L ++ + + G+L Q +R+ L+ R+G R+ Sbjct: 247 REGEKCTNAIVFCNRKVDVDIVAKSLKKYGYNAEPIHGDLDQSQRTRTLEGFREGSIRLL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351 IA+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGR+G + V+P++ Sbjct: 307 IASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVVPRD 360 >gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831] gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831] Length = 495 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 192/343 (55%), Gaps = 7/343 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL + G+ T +Q + L DV+ AQTG+GKT AFG+ L + + A+ + Sbjct: 13 IMKALEKMGFEEATPIQAETIPHALEGHDVIGQAQTGTGKTAAFGIPLINKINAKLRKVQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L +APTRELA+QV E+ L V GG + R+ R L++G IVV Sbjct: 73 ------GLIVAPTRELAIQVAEEINRLAKFKSVRALAIYGGQPMDRQIRALKDGPQIVVA 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+R K + I + VLDEADEML++GF DDI IL P++R+ L+FSAT+ Sbjct: 127 TPGRLLDHMRRKTIRIDQVHTAVLDEADEMLNMGFIDDIREILKGIPEERQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A K+ V + ++ +ID + + + + + N L + + AI+F Sbjct: 187 KEIRNIATTLMKEPKEVKVKAKEMTVENIDQYFIEIPEKYKFDTLNNHLDINSPELAIIF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V + L ++ + G+L+Q +R + L+ + GR V +ATDVAARG+D+ Sbjct: 247 ARTKKRVDEVAEGLQARGYRSEGIHGDLTQGKRMSVLKKFKQGRVDVLVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +PE+ +HR GRTGRAG+ G ++ F+ P+ M Sbjct: 307 SGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGEAISFITPREM 349 >gi|261342608|ref|ZP_05970466.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC 35316] gi|288315255|gb|EFC54193.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC 35316] Length = 629 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 9/373 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + + Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHNIDPD----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + E+ GV V GG + R L+ G IVV Sbjct: 72 -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVV 368 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +N +RR R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIP 369 Query: 369 WEPAPSVEAIRER 381 P+ E + +R Sbjct: 370 EAELPNAELLGKR 382 >gi|212709939|ref|ZP_03318067.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM 30120] gi|212687451|gb|EEB46979.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM 30120] Length = 657 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 168/565 (29%), Positives = 270/565 (47%), Gaps = 46/565 (8%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ALS+ GY + +Q+ + L DVL AQTGSGKT AF L L + A+ Sbjct: 18 ILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAAFSLPLLHNIDAD----- 72 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ V V GG + R L+ G +VV Sbjct: 73 -LKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRALRQGPQVVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+LK +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 132 GTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I + + + KD + I + DI V ++ A+V L AI+ Sbjct: 192 PEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRFLEAEDFDAAII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 252 FVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 312 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 371 Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419 P + + +R A++I Q L+S D+ + LLAK P E +AA Sbjct: 372 VELPDADLLSQRRQAKFAEQIQQQ---LESSDLDQYR---SLLAKMSPSEDVDMETLAAA 425 Query: 420 FLRI---HRAGLC----------------APEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460 L++ RA + S + F R + R Sbjct: 426 LLKMAQGERALILPPDAPRRPRREFNDRDDRRGNDRRDRNSNGNGFDRAERGDRGARRER 485 Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516 + + + VG E R ++ + + I+ + IG I++ + +E+ AD Sbjct: 486 RDVGDMEMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLYGTHSTIELPKGMPAD 545 Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKP 541 + L R L+K Q++ +G +P Sbjct: 546 VLTHLSRARILNKPTQMQLIGDAQP 570 >gi|71898665|ref|ZP_00680835.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] Length = 609 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 212/374 (56%), Gaps = 13/374 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+++ GY + +Q A + L +DVL AQTG+GKT AF L L + + + Sbjct: 20 VMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK-- 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L +APTRELA+QV + A +G V GG S ++ L+ G H++V Sbjct: 78 ----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIV 133 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++S LK +VLDEADEML +GF +D+E +L P R++ +FSAT+ Sbjct: 134 GTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATM 193 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I +A+ Y +D + V IA++ ++I R V+ + +A+ IL I+ Sbjct: 194 PPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMII 253 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+A+ + L A++G++ Q +R + ++DG+ + +ATDVAARG+D Sbjct: 254 FVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGLD 313 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366 + + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R+ ER + + Sbjct: 314 VERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPIEA 373 Query: 367 VVWEPAPSVEAIRE 380 + PSV+A+ + Sbjct: 374 MQL---PSVDAVND 384 >gi|333004456|gb|EGK23986.1| ATP-independent RNA helicase dbpA [Shigella flexneri VA-6] Length = 455 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 137/373 (36%), Positives = 205/373 (54%), Gaps = 14/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + + F Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DASLFQT--- 72 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 LAL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 73 -LALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVEQSALSLHGDLEQ--RDQTLVRFANGSARVLVATDVAARGLDIKS 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 308 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 366 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 367 PPANSSIVTLEAE 379 >gi|198242882|ref|YP_002217254.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937398|gb|ACH74731.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326625031|gb|EGE31376.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 629 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 200/372 (53%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 17 ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + ATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILTATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 371 VELPNAELLGKR 382 >gi|123968740|ref|YP_001009598.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. AS9601] gi|123198850|gb|ABM70491.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. AS9601] Length = 593 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 161/551 (29%), Positives = 265/551 (48%), Gaps = 43/551 (7%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +L +GY N T +Q+A + + +D+L AQTG+GKT AF L L L +N Sbjct: 60 QSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL-TDNKE 118 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 + L + PTRELA QV + +++ V I GG + L+ + Sbjct: 119 LNAK----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDV 174 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DHIR I + +VLDEADEML++GF +DIE+I+D P+ ++M++FSA Sbjct: 175 VVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSA 234 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I +AK Y D + I S ++ I + + V + +A+ IL + + Sbjct: 235 TMPSEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGV 293 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + + L V L+G++ Q +R N + ++ G + +ATDVAARG Sbjct: 294 IIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARG 353 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ ++LV++ + + E HR GRTGRAGR G ++ + Q + L + Sbjct: 354 LDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRTKI 413 Query: 368 VWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 PS + I E+ ++++ + FL + +E K + + + + EK + I Sbjct: 414 EEINIPSNKIINEKRMEKLIDNVNESFLAKDENEENKALIIDVLDNLKEKYSMDESNIAM 473 Query: 426 AGLCAPEEITPVSLVSGRDRF---RDDSRAFKVGGGS-----------------RDNFKG 465 A ++LV G F DDS K R+N++ Sbjct: 474 AA---------INLVIGNKSFFVDEDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNNYQN 524 Query: 466 SSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523 S+ + + G ++ +C S+ IN +SIG I++ D + V++ DL R Sbjct: 525 DSFETYKFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPR---DLHRE 581 Query: 524 TVKLDKGIQLK 534 T K I+L+ Sbjct: 582 TKNKLKKIKLR 592 >gi|242240743|ref|YP_002988924.1| ATP-dependent RNA helicase DeaD [Dickeya dadantii Ech703] gi|242132800|gb|ACS87102.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703] Length = 621 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 146/424 (34%), Positives = 220/424 (51%), Gaps = 23/424 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ALS+ GY + +Q + L +DVL AQTGSGKT AF L L + + E Sbjct: 17 ILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNVNPE----- 71 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV E+ GV V GG + R L+ G +VV Sbjct: 72 -LKAPQILVLAPTRELAVQVAEACGEFSKHMHGVNVVALYGGQRYDVQLRALRQGPQVVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S+L +VLDEADEML +GF +D+E I+ P + +FSAT+ Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPDGHQTALFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + D V I S DI V ++ A++ L AI+ Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 VDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 370 Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419 P+ E + +R A ++ Q L+S D+ + LLAK P E +AA Sbjct: 371 VELPNAELLGQRRLAKFAAKVQQQ---LESSDLDQYR---ALLAKLQPSAELDVETLAAA 424 Query: 420 FLRI 423 L++ Sbjct: 425 LLKM 428 >gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000] gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum GMI1000] Length = 608 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 144/387 (37%), Positives = 204/387 (52%), Gaps = 35/387 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67 I AL E Y T VQ + L +D+LV++QTGSGKT AF L + + + Sbjct: 41 IARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISEQPEPQR 100 Query: 68 -------------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106 R PA A P L + PTRELA+QV GR L +V A Sbjct: 101 PRADGPQQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 154 Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166 +GG+ ++ L I++ TPGRL DHI +++S L +V DEAD MLD+GF Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214 Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226 DDIE I+ ++P R+MLMFSAT+ I LA+ ++ R+ IA+ S I+ R Sbjct: 215 DDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARIDQSHIEERLHFT 274 Query: 227 A-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285 LS + + ++LR K AIVF +T+ + L E F AL G++ Q R+ Sbjct: 275 DDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNR 334 Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L +R G+ RV +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ Sbjct: 335 TLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 394 Query: 346 FVIPQN---MQRRAERLF-REANVSVV 368 ++ RR ER R + +VV Sbjct: 395 NLVNHGDTFQWRRIERFVDRRIDATVV 421 >gi|192362407|ref|YP_001982121.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107] gi|190688572|gb|ACE86250.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus Ueda107] Length = 477 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 187/330 (56%), Gaps = 1/330 (0%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ LT VQE + P R +D+LV+AQTG+GKT AFG L LL E R + AL Sbjct: 48 GFQQLTPVQEQAIPPARRGRDLLVTAQTGTGKTAAFGFPLLQQLL-EKPRATQPGHTRAL 106 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTREL QV L+ T + +A GGV + LQ G ++V TPGRL +H Sbjct: 107 VLAPTRELVEQVADNLQQYAHFTSLTIAAVYGGVKHSSQANKLQAGLDVLVATPGRLLEH 166 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 + +N+ ++ +VLDEAD MLD+GF +I +L+ KK ++L FSAT++ ++TTLAK Sbjct: 167 VELGNINLQQVEFLVLDEADRMLDMGFVGEISKLLNGMGKKPQILFFSATLTQSVTTLAK 226 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + V ++ N +++ V + + + +LR H +VF STR Sbjct: 227 EILARPLSVAVSKRNAVADTVEHLLYPVDQARKYELFMELLRTHNWFQVMVFSSTREEAD 286 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L E + + E +Q R AL+ ++G+ +V +AT+VAARG+D+ L+ V++ Sbjct: 287 KLINALKEDNVEGAVIHSEKTQGARRRALKEFKEGKLQVLVATEVAARGLDIQGLDYVVN 346 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +L E+ +HR GRTGRAG KG+++ ++ Sbjct: 347 LDLPFFIEDYVHRVGRTGRAGSKGIAISLV 376 >gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1] gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1] Length = 615 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 212/374 (56%), Gaps = 13/374 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+++ GY + +Q A + L +DVL AQTG+GKT AF L L + + + Sbjct: 26 VMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK-- 83 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L +APTRELA+QV + A +G V GG S ++ L+ G H++V Sbjct: 84 ----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIV 139 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++S LK +VLDEADEML +GF +D+E +L P R++ +FSAT+ Sbjct: 140 GTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATM 199 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I +A+ Y +D + V IA++ ++I R V+ + +A+ IL I+ Sbjct: 200 PPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMII 259 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+A+ + L A++G++ Q +R + ++DG+ + +ATDVAARG+D Sbjct: 260 FVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGLD 319 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366 + + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R+ ER + + Sbjct: 320 VERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPIEA 379 Query: 367 VVWEPAPSVEAIRE 380 + PSV+A+ + Sbjct: 380 MQL---PSVDAVND 390 >gi|319778865|ref|YP_004129778.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9] gi|317108889|gb|ADU91635.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9] Length = 457 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 141/404 (34%), Positives = 221/404 (54%), Gaps = 20/404 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LS G++ + VQ L L DV A+TGSGKT+AFGL + + N F A Sbjct: 17 LSSLGFIQMRPVQARSLPHILEGSDVRTLAKTGSGKTLAFGLGIIQKI---NPSFF---A 70 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PT ELA QV +E+ L A + V GGV++ + L++GAHI+VGTPG Sbjct: 71 CQGLVLTPTHELADQVAQEIRKLARALPNIKVLTLCGGVALRPQIESLKHGAHIIVGTPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D I+ L++S +K VLDE D MLD+GF DDI I ++P +++ L+FSAT I Sbjct: 131 RILDLIQRGDLDLSKVKVFVLDECDRMLDMGFFDDIGEISKATPLRKQTLLFSATFPEHI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +++ +Q++ V + + E + +++D+ + S+R V IL+++ + + FC+T Sbjct: 191 KKISEGFQRNPVHIELIEEEKVPTNLDHIFFKTSDSERFAHSVQILKHYQPISTLAFCNT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R + + L E L GE+ ++ER + L + V +ATDVAARG+D+ L Sbjct: 251 RTQCEKLSSFLNEQNISSKFLHGEMEKREREDVLLQFSNKSLSVLVATDVAARGLDIEGL 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372 + V++ ELS N +HR GRTGR +G+ V P+ M R +R+ + + WE Sbjct: 311 DAVLNIELSPNVPTHIHRIGRTGRHSDRGLVFNLVTPEEMY-RFDRIDAQIPLESKWEKI 369 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVL--LAKH 411 PS R+R+ L P+ SI+G D+ + VD++ + KH Sbjct: 370 PS--NTRKRN----LVAPMRTISIKGGKKDKLRKVDLIGAMTKH 407 >gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3] gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3] Length = 471 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 195/354 (55%), Gaps = 14/354 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + P L +DVL AQTG+GKT +F L + TLLA Sbjct: 11 PKVL-KAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + G + Sbjct: 69 --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-------AIVNILR 240 T++P I + + R+ +A + I+ VL S RD + ++ Sbjct: 187 TMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRALID 246 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAI+FC+ + V K L ++ + + G+L Q +R+ L R+G+ R+ Sbjct: 247 AEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRLL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 +A+DVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR G ++ IP++ Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRD 360 >gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Dixon] gi|71901364|ref|ZP_00683458.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12] gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Dixon] gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12] Length = 609 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 212/374 (56%), Gaps = 13/374 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+++ GY + +Q A + L +DVL AQTG+GKT AF L L + + + Sbjct: 20 VMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK-- 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L +APTRELA+QV + A +G V GG S ++ L+ G H++V Sbjct: 78 ----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIV 133 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++S LK +VLDEADEML +GF +D+E +L P R++ +FSAT+ Sbjct: 134 GTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATM 193 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I +A+ Y +D + V IA++ ++I R V+ + +A+ IL I+ Sbjct: 194 PPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMII 253 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+A+ + L A++G++ Q +R + ++DG+ + +ATDVAARG+D Sbjct: 254 FVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGLD 313 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366 + + V++ ++ + E+ +HR GRTGRAGR G ++ FV P + M R+ ER + + Sbjct: 314 VERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPIEA 373 Query: 367 VVWEPAPSVEAIRE 380 + PSV+A+ + Sbjct: 374 MQL---PSVDAVND 384 >gi|206970279|ref|ZP_03231232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] gi|206734856|gb|EDZ52025.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] Length = 481 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 123/382 (32%), Positives = 202/382 (52%), Gaps = 9/382 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L +KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYNHPTEVQGEVIPVALEKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAIRERDA---QRILQDPLF 392 S E + + A ++I P+ Sbjct: 372 SKEEVMKEKAAFEEKIHAKPII 393 >gi|85860953|ref|YP_463155.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB] gi|85724044|gb|ABC78987.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB] Length = 572 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/353 (38%), Positives = 193/353 (54%), Gaps = 12/353 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57 MK F I I + L G+ +T VQE I+ L R+ D++ AQTG+GKT AFG+ Sbjct: 1 MKTFAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 L R AL + PTREL VQV +L + Y + +V V GG S+ Sbjct: 61 LIQLTDTRLKRTQ------ALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPV-YGGASIV 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + +L+ GA +VV TPGRL D IR +++S + VVLDEADEML +GF+D++ IL Sbjct: 114 SQTEELRKGAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAV 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 +P + L+FSAT+ + +A NY KD + + + N ++D+ +V+ R A+ Sbjct: 174 TPDSKNTLLFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I + AI+FC TR L E + AL G+LSQ +R + + R Sbjct: 234 RRIADMNPELYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNI 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 R+ +ATDVAARG+D+ DL VI+ L HRSGRTGRAG+KG+S+ +I Sbjct: 294 RMLVATDVAARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALI 346 >gi|262370602|ref|ZP_06063927.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262314402|gb|EEY95444.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 640 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 198/354 (55%), Gaps = 11/354 (3%) Query: 2 KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF----- 54 K F + P + + +AL G+ T VQE + L KD+LVS+QTGSGKT AF Sbjct: 3 KTFADFPLHESLQQALQSLGFTAPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62 Query: 55 -GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGV 112 LA T + +R + P L + PTRELA QV ++ + ++ G +A +GG+ Sbjct: 63 NALAAQETFVPFKERMKAITQPNILVLCPTRELAQQVSQDAIGFVRHMKGARIAAIMGGM 122 Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172 ++ + L+ GA +VV TPGRL D + + + + + A+++DEAD MLDLGF +D+E I Sbjct: 123 PFGKQIQQLK-GAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAI 181 Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDR 231 D + +++ LMFSAT + I TLA+ D R+ I + + ++DI + Sbjct: 182 SDLAANRKQTLMFSATFAGRIITLAERMMNDPQRIAIETGHSTNTDITQTLHWTDGFEHK 241 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 + + L A+VF ST+ + LAE VVAL G + Q R+ L+ +R Sbjct: 242 KKLLTHWLSAEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIR 301 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +GRA++ +ATDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAI 355 >gi|255038837|ref|YP_003089458.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951593|gb|ACT96293.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM 18053] Length = 383 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 130/337 (38%), Positives = 187/337 (55%), Gaps = 4/337 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--R 68 I +AL E GY T +Q + L KD+L AQTG+GKT AF + + LL EN + Sbjct: 12 IKKALQEEGYTTPTPIQSKAIPVILETKDLLGCAQTGTGKTAAFAIPMLQ-LLHENPVGK 70 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 F S AL + PTRELA+Q+G T V V GGV + L G ++ Sbjct: 71 FE-RSRIRALILTPTRELAIQIGESFAAYGRYTRVRHTVIFGGVGQKPQTDALAKGVDVL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D I + ++ L+ VLDEAD MLD+GF D++ ++ P KR+ L FSAT Sbjct: 130 IATPGRLLDLINQGFIKLNQLEFFVLDEADRMLDMGFVHDVKKVIKLLPGKRQSLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + PAI TLA ++ V+V + + I V S++++ +++IL+ A+ Sbjct: 190 MPPAIVTLAGTILRNPVKVEVTPVSSTADTIRQSVFFVDKSNKNSLLLHILQDESIATAL 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ + KVL + A+ G SQ R NAL+ ++ RV +ATD+AARGI Sbjct: 250 VFTRTKHGADKVVKVLRKAGVTSEAIHGNKSQTARQNALKNFKNQTTRVLVATDIAARGI 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ DL VI+ E+ + PE +HR GRTGRAG KG+++ Sbjct: 310 DVDDLTHVINYEIPNIPETYVHRIGRTGRAGAKGIAL 346 >gi|213963177|ref|ZP_03391435.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga sputigena Capno] gi|213954261|gb|EEB65585.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga sputigena Capno] Length = 584 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 204/357 (57%), Gaps = 14/357 (3%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGL 56 M +FE + + I +A+S+ G+ + +Q+ + P L D++ AQTG+GKT AFG Sbjct: 1 MNLFEQLGLDEPILKAISDMGFEIPSEIQQKAI-PTLLANGADMVALAQTGTGKTAAFGF 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114 L L+ + R + L ++PTREL +Q+ EL YAK V V GG S+ Sbjct: 60 PLLQ-LIDTDSRVTQG-----LILSPTRELCLQIASELRN-YAKYLPKVNVVAVYGGASI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R L+ GA I+V TPGR+ D IR ++ISH+ VLDEADEML++GF +DI IL Sbjct: 113 EEQARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 +P+++ +FSAT+ + +A+ + + + + + + N+ + + + +V+ R A Sbjct: 173 HTPQEKSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + + + ++VFC T+ + L E + AL G+LSQ +R ++ R + Sbjct: 233 LKRLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQ 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ++ +ATDVAARGID+ D+ VIH +L E HRSGRTGRAG+ G+S+ ++P++ Sbjct: 293 IQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKS 349 >gi|167041390|gb|ABZ06143.1| putative DEAD/DEAH box helicase [uncultured marine microorganism HF4000_005K23] Length = 427 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 125/332 (37%), Positives = 187/332 (56%), Gaps = 10/332 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q + P L KD+L +AQTG+GKT+ +G+A + LL NDR S A L I PT Sbjct: 26 TPIQAQAIPPALLGKDILGTAQTGTGKTLCYGIACINKLL--NDRGSNA-----LIICPT 78 Query: 84 RELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142 RELAVQVG L L T + AV IGG S+ ++ R LQ +++GTPGRL DH++ K Sbjct: 79 RELAVQVGDVLNGLIENTMNIKSAVLIGGESMQKQLRQLQKRPRLIIGTPGRLNDHLKRK 138 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 L + +VLDE D MLD+GF +E IL PKK + L+FSAT+ I + + Y Sbjct: 139 SLKLHQSYFLVLDETDRMLDMGFIPQVEQILKFVPKKHQTLLFSATLPQNILKITERYLN 198 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 D +R+ + S S I + V+ D+ N + L Y + ++F T+ + + Sbjct: 199 DPIRIRVGSTTTPISKIKQEVIQVSEGDKYNKLQEEL-YKRKGSILLFVKTKRNADKMAD 257 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 L + + + G L Q +R L R G+ R+ I+T++A+RG+D+P ++ VI+ L Sbjct: 258 RLHDDGHRCDCMHGNLRQSKRQRTLIAFRSGKIRILISTELASRGLDVPSIQHVINYHLP 317 Query: 323 SNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 PE+ +HR GRT RAG +G ++ F+ P + Q Sbjct: 318 QVPEDFIHRIGRTARAGAEGCALTFITPNDRQ 349 >gi|193222330|emb|CAL61847.2| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 464 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 138/392 (35%), Positives = 209/392 (53%), Gaps = 20/392 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73 L GY +TS+Q L L+ +D++ A+TGSGKT AFG+ + L +P Sbjct: 19 LDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQKL-------NPTWF 71 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A L I PTRELA QV EL L +A ++ +C GG + + L++GAHIVVGT Sbjct: 72 AIQGLVICPTRELADQVSNELRRLARFADNIKILTLC-GGAPMRPQIASLEHGAHIVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI +N+S ++ +VLDEAD M+D+GF ++I I+ + P++R+ L+FSAT Sbjct: 131 PGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQTLLFSATYPD 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I + + +D V V + + QH D I+ R V DR+ A+ +L+++ + + Sbjct: 191 DIRKASAEFLRDPVEVKVEA---QHDDSQIEQRFYEVGYDDRNAAVATLLKHYRPVSTLA 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ L F +AL GEL Q+ER L + + V +ATDVAARG+D Sbjct: 248 FCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVATDVAARGLD 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + L VI+ ++S + E +HR GRTGR KG+++ + N ++ + + W Sbjct: 308 IQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIEEYQQKPAQW 367 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 S E D L P+ I G +K Sbjct: 368 FDLKSAEPAEGGD----LHAPMVTLCIMGGKK 395 >gi|262042929|ref|ZP_06016074.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039769|gb|EEW40895.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 457 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 206/372 (55%), Gaps = 10/372 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+++T VQ A L L KDV V A+TGSGKT AFGL L + + RF S Sbjct: 18 LNELGYLSITPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV EL L + + + GG +R LQ+ HI+V TPG Sbjct: 75 ---LVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ +++ L+ +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++ Q++ + I + + + I+ + V+ + + +L H + +VFC+T Sbjct: 192 AAISGRVQRNPQTIEIDTVDALPA-IEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L ++L G+L Q++R L +G RV +ATDVAARG+D+ L Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372 LV++ EL+ +PE +HR GRT RAG +G+++ F P+ Q RA L +S+ W PA Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369 Query: 373 PSVEAIRERDAQ 384 P+ I A+ Sbjct: 370 PTGNTIAPLTAE 381 >gi|157148730|ref|YP_001456049.1| ATP-dependent RNA helicase DeaD [Citrobacter koseri ATCC BAA-895] gi|157085935|gb|ABV15613.1| hypothetical protein CKO_04559 [Citrobacter koseri ATCC BAA-895] Length = 649 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 201/372 (54%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL++ GY + +Q + L +DVL AQTGSGKT AF L L + L E Sbjct: 34 ILDALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 88 Query: 71 PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP L +APTRELAVQV + ++ GV V GG + R L+ G IVV Sbjct: 89 -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DH++ L++S L +VLDEADEML +GF +D+E I+ P+ + +FSAT+ Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI + + + K+ V I S DI V ++ A+V L AI+ Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + AL+G+++Q R L+ ++DGR + IATDVAARG+D Sbjct: 268 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387 Query: 370 EPAPSVEAIRER 381 P+ E + +R Sbjct: 388 VELPNAELLGKR 399 >gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus epidermidis VCU121] Length = 509 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L D+L AQTG+GKT AFG+ L ++ E Sbjct: 15 QTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIEKVVGE------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L+ V V GG+ + R+ + L+ G IVVGTP Sbjct: 68 QGVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI TL + + K + + ID +V ++ + N L H + AIVF Sbjct: 188 AIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251] gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM 1251] Length = 398 Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 199/373 (53%), Gaps = 8/373 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ ++GY T +Q+ + L +KD+L AQTG+GKT F L L L D+ S Sbjct: 12 ILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLLELL--SRDKSS 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA QVG + + GGVS++ + L+ G IV+ Sbjct: 70 TKKRIRALILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLSALRKGVDIVIA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ K +++ ++ +VLDEAD MLD+GF +DI+ +L PK ++ L+FSAT S Sbjct: 130 TPGRLLDHLSQKSIDLKDVEFLVLDEADRMLDMGFINDIKKVLAVLPKNKQTLLFSATYS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L+ V + + N+ I V + +V++++ + +VF Sbjct: 190 DEIKKLSDRLLNSPVLIEVERPNKTAQSIKQIVYPVDKERKRELLVHLIKEGKWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ + L + A+ G SQ R ALQ +DG RV +ATD+AARGID+ Sbjct: 250 TRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDGDIRVLVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQRRAERLFREANVSVV 368 L VI+ EL + PE+ +HR GRTGRAG G +S+ I ++ + + ++ V Sbjct: 310 DQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYLSSIEKLIKTDIQKV 369 Query: 369 W----EPAPSVEA 377 W +P PS++A Sbjct: 370 WLKDFKPDPSIKA 382 >gi|228911292|ref|ZP_04075096.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200] gi|228848310|gb|EEM93160.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200] Length = 481 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 198/370 (53%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVTEEEKLSLLKDVTIIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAIRERDA 383 S E + + A Sbjct: 372 SKEEVMKEKA 381 >gi|154684961|ref|YP_001420122.1| YdbR [Bacillus amyloliquefaciens FZB42] gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42] Length = 511 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 131/397 (32%), Positives = 217/397 (54%), Gaps = 27/397 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++++ G+ T +Q + L KDV+ AQTG+GKT AFG+ L ++ +P Sbjct: 33 KSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-------EKMNPE 85 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S + A+ IAPTRELA+QV EL + V GG + R+ R L+ HI+VGT Sbjct: 86 SPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 145 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI + + ++++ VV+DEADEML++GF DDIE IL + P + L+FSAT+ Sbjct: 146 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSDHQTLLFSATMPA 205 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + + V + ++ S+I + V + + + +L + AIVF Sbjct: 206 PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFG 265 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + L + + G+L+Q +R AL+ ++G V +ATDVAARG+D+ Sbjct: 266 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 325 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V + ++ +PE+ +HR GRTGRAG+ GM++ F+ P R + + R Sbjct: 326 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR--------- 371 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 ++E +R R +++P ++++G ++ VD L Sbjct: 372 ---AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVDRL 404 >gi|323203477|gb|EFZ88501.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 380 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 204/367 (55%), Gaps = 20/367 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS----TLLAENDRFS 70 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L TL Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRIDVTLFQTQ---- 73 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+ Sbjct: 74 ------ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHII 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P+ R+ L+FSAT Sbjct: 127 VATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 AI ++ Q+ +R+ I + + + I+ + ++ ++ + + +L H + + Sbjct: 187 WPDAIAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSVHEKISLLQTLLSQHQPASCV 245 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+ Sbjct: 246 VFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGL 305 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367 D+ LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + Sbjct: 306 DIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKL 364 Query: 368 VWEPAPS 374 W AP+ Sbjct: 365 NWLNAPA 371 >gi|257141454|ref|ZP_05589716.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264] Length = 465 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 143/397 (36%), Positives = 210/397 (52%), Gaps = 15/397 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY +T +Q A L L D++ A++GSGKT AF LAL + L A RF Sbjct: 23 LAQLGYTVMTPIQAASLPIALAGHDLITHAKSGSGKTAAFSLALLARLDAR--RFDVQ-- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPG Sbjct: 79 --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + ++ V + E S I R V +R +A+ +L+++ + I FC+T Sbjct: 197 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL F +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 E VI+ +++ +PE +HR GRTGRA ++G ++ + + R + + V W P Sbjct: 316 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALGRDVEWHPLA 375 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407 ++A D L P+ I G K + DVL Sbjct: 376 ELKA----DGNEPLLPPMETLQILGGRKDKIRPGDVL 408 >gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 516 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 191/344 (55%), Gaps = 13/344 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L KDVL AQTG+GKT +F L + + L Sbjct: 11 PRVL-KAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITILGKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L +SA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDRDNAIVNILR 240 T++P I + + AV++ +A + I+ + + V + +D+ + ++R Sbjct: 187 TMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALIR 246 Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G NAI+FC+ + V K L +H F + G+L Q +R L RDG + Sbjct: 247 AEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHLL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 +A+DVAARG+D+P + V + ++ ++PE+ +HR GRTGRAGRKG Sbjct: 307 VASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKG 350 >gi|313202644|ref|YP_004041301.1| dead/deah box helicase domain protein [Paludibacter propionicigenes WB4] gi|312441960|gb|ADQ78316.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes WB4] Length = 621 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 161/538 (29%), Positives = 266/538 (49%), Gaps = 49/538 (9%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLL 63 N+ I A+ E GY VQE + P + E+ D++ AQTG+GKT AFGL + + + Sbjct: 7 NLKDDILSAIEELGYAQPMPVQEKTI-PFMLEQTADLVALAQTGTGKTAAFGLPVLNMID 65 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDL 121 A + AL +APTREL +Q+ +L+ Y+K G+ + GG + + R L Sbjct: 66 AGRKQVQ------ALVLAPTRELCIQIANDLKG-YSKNMRGMRIVPVYGGEDIRTQLRQL 118 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 I+V TPGRL D I + + + +VLDEADEML++GF++DIE IL+ +P+ RR Sbjct: 119 DTAPQIIVATPGRLIDLIERGKIELGAIDFLVLDEADEMLNMGFKEDIETILERTPETRR 178 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 ++FSAT+ I +AK Y K+ + + ++N ++++ + R + I+ Sbjct: 179 TMLFSATMPKEIANIAKRYMKNYEEITVGTKNAGSENVEHIYYVSQARQRYLVLKRIVDL 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + IVFC TR L + AL G+LSQ +R N +Q R ++ +AT Sbjct: 239 NPDIYGIVFCRTRQETKEVADKLMHDGYNADALHGDLSQAQRDNVMQKFRIRNIQLLVAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+D+ DL VI+ L + E HRSGRTGRA +KG++V +I + + + + R Sbjct: 299 DVAARGLDVSDLTHVINYNLPDDVEVYTHRSGRTGRANKKGIAVSIIHSKERFKIKDIER 358 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLF-----LDSIQGDEKKMVDVL--------- 407 + + E P + + + LF +++++ E+++ + Sbjct: 359 MLRKTFIQEQIP--------NGLEVCKKQLFYMIDRMENVEVSEEQIETYMPQIMKQLEY 410 Query: 408 LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGGGSRD 461 L+K + K ++ F R A + P G R+ R+D R K GG R Sbjct: 411 LSKEELLKRFVSLEFNRFLSYYKNAEDLNLPERSERGERGERNGDRND-RGSKSGGKVR- 468 Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 ++VG ++ + + + ++ +G SIG+I V TF +V +D V+ Sbjct: 469 -------LKMNVGEREGIDPKRFLGIINDVTGDKSISIGSIEVTNKFTFFDVFSDQVE 519 >gi|298207628|ref|YP_003715807.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559] gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559] Length = 424 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 131/395 (33%), Positives = 208/395 (52%), Gaps = 11/395 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I ++L E+GY TS+Q + L+ +DVL SAQTG+GKT AF + + L + Sbjct: 7 NIISPILKSLDEQGYEKPTSIQARSIPLILKGEDVLGSAQTGTGKTGAFAIPIIQHLAND 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L+L + PTRELA+Q+G T + V GGV + L++G Sbjct: 67 LENAKGKRKILSLIVTPTRELAIQIGENFSAYGKYTSLKSTVIFGGVPQRAQTNKLKSGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL D + +++ +K VLDEAD MLD+GF DI+ +L PK R+ L F Sbjct: 127 DVLIATPGRLLDLMDQGYISLKDVKYFVLDEADRMLDMGFIHDIKKLLTKLPKNRQSLFF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I TL+ K+ +V + + I +++ + +++IL Sbjct: 187 SATMPKNILTLSNQILKNPKKVEVNPVSSTAETIQQYLYTTNKTNKGDLLLHILEDPKID 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ R + L + + A+ G SQ +R AL+ +DG RV +ATD+AA Sbjct: 247 QVLVFSKTKHGADRTVRKLLKKKIKSAAIHGNKSQNQRQKALKAFKDGNIRVMVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQ--RRAERLFRE 362 RGID+ LE VI+ ++ + PE +HR GR GRAG G+++ + P+ +Q + E+L ++ Sbjct: 307 RGIDIDKLEYVINYDIPNEPETYVHRIGRCGRAGEDGIAISIGEPEEIQFIKDIEKLIKQ 366 Query: 363 ANVSVVWEPAP--------SVEAIRERDAQRILQD 389 + P P S + E++ QRI Q+ Sbjct: 367 KITVIKDNPFPQTDKPMTTSEKKAAEKEKQRIKQE 401 >gi|126463236|ref|YP_001044350.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126104900|gb|ABN77578.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 461 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 128/353 (36%), Positives = 190/353 (53%), Gaps = 4/353 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L++ + T +Q + ++ +D++ AQTG+GKT+AFGL L LL P Sbjct: 23 QGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLHRLLGVGHPPPPR 82 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL +APTREL Q+ LE T V V GG S++R+ L GA I+V TP Sbjct: 83 TI-RALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERLARGADIMVATP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + + H +VLDEAD+MLD+GF + I P KR+ L+FSAT+ Sbjct: 142 GRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQTLLFSATMPKL 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA Y ++ V+V +A + I D+ + + L+ H + A+VF Sbjct: 202 IEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQKHPREQALVFGR 261 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + K+L F+ ++ G SQ +R L RDG V +ATDVAARGID+P Sbjct: 262 TKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVLVATDVAARGIDIPG 321 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362 + V + ++ + PEN +HR GRT RAG +G +V FV P M+ R E+L ++ Sbjct: 322 VRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRAVEKLLKQ 374 >gi|95930488|ref|ZP_01313224.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] gi|95133528|gb|EAT15191.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] Length = 433 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 118/350 (33%), Positives = 200/350 (57%), Gaps = 5/350 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+++ + + + G+ LT VQE + L +D+ AQTG+GKT AF +AL + LL Sbjct: 7 NLPELVQQGVVQLGFSELTPVQEQAIPLALNGRDIAAQAQTGTGKTAAFLIALYTRLL-- 64 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N+ + P AL +APTREL VQ+ + + L + + + GGV R+R+ G Sbjct: 65 NNPQPTSENPRALIMAPTRELVVQICEDAKGLVPDSPLTIHPVYGGVDYDRQRQAFGKGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183 IVV TPGRL D+ + K + ++ +V+DEAD M D+GF D+ FIL P KR+ + Sbjct: 125 DIVVATPGRLIDYAKQKVFSFKRIEVLVIDEADRMFDMGFISDLRFILRRLPSYDKRQTM 184 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+SP + LA ++ +A +V I E ++ V ++ ++ +L Sbjct: 185 LFSATLSPRVMELAYDFMNEAEKVQIEPEQVTAERVEQIVYHVGAKEKIPLLLGLLNGRM 244 Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A +VF +T+ T+VL + + +SG++SQ +R L ++G+ +V +ATD Sbjct: 245 ADGRVMVFANTKRDTDYVTRVLQANDVKAAQISGDISQVKRMRILSEFKEGKVQVLVATD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 VA+RGI + D+ V++ ++ +PE+ +HR GRT RAG G+++ + +++ Sbjct: 305 VASRGIHIEDVTHVVNYDVPQDPEDYVHRIGRTARAGASGLAIMMADEDL 354 >gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479] gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479] Length = 432 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 123/333 (36%), Positives = 184/333 (55%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL E+GY + +QE + L KDVL AQTG+GKT AF L + L+ +D+ Sbjct: 14 KALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPIIQNLMRPSDKKHSK 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA+Q+ + + T V AV GGVS + ++LQ G I+V TP Sbjct: 74 RVIRSLILTPTRELALQIAENFKEYGSHTPVRCAVIFGGVSAVPQIKELQRGIDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I +++SH++ VLDEAD MLD+GF D++ I+ P K++ L+FSAT+ P Sbjct: 134 GRLNDLIHQGEISLSHVEMFVLDEADRMLDMGFIHDVKKIISLLPVKKQTLLFSATMPPE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L + + V + + I+ V ++ +V++L+ + +VF Sbjct: 194 IQALTEKLLHNPAVVEVTPVSSIVDLIEDSLYYVDKENKRALLVHLLKREAITSTLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R K L ++ A+ G+ SQ R AL + G RV ATD+AARGID+ + Sbjct: 254 TKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQFKAGTVRVLAATDIAARGIDIEE 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L VI+ +L + PE +HR GRTGRAG G ++ Sbjct: 314 LSCVINFDLPNVPETYVHRIGRTGRAGLGGRAI 346 >gi|323187577|gb|EFZ72886.1| ATP-independent RNA helicase dbpA [Escherichia coli RN587/1] Length = 457 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + + F Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVRAKTGSGKTAAFGLGLLQQI--DVSLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --GLVLCPTRELADQVAGELRRLARFLLNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368 Query: 372 APSVEAI 378 P+ +I Sbjct: 369 PPANSSI 375 >gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131] gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131] Length = 524 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 191/344 (55%), Gaps = 13/344 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L KDVL AQTG+GKT +F L + + L Sbjct: 11 PRVL-KAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITILGKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L +SA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDRDNAIVNILR 240 T++P I + + AV++ +A + I+ + + V + +D+ + ++R Sbjct: 187 TMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALIR 246 Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G NAI+FC+ + V K L +H F + G+L Q +R L RDG + Sbjct: 247 AEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHLL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 +A+DVAARG+D+P + V + ++ ++PE+ +HR GRTGRAGRKG Sbjct: 307 VASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKG 350 >gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis WY96-3418] Length = 569 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + LA D Sbjct: 16 QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + E + CI GG + R L+ G Sbjct: 76 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD++F+L ++ + L+FS Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQSQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S L ++V A++G++ Q +R + R ++ + +ATDV AR Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353 >gi|241767104|ref|ZP_04764875.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] gi|241362321|gb|EER58319.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] Length = 469 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 134/334 (40%), Positives = 194/334 (58%), Gaps = 12/334 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + GY +T +Q A L P L KD++ A TGSGKT AF LAL + L RF A Sbjct: 25 LQQLGYTRMTPIQAASLPPALLGKDLIAQASTGSGKTAAFALALLANLNPR--RF----A 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV E+ L A+ + V GGV + + L++GAHIVVGTPG Sbjct: 79 VQALVLCPTRELADQVTAEIRRLARAEENIKVVTLCGGVPLRGQMLSLEHGAHIVVGTPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ + L + L +VLDEAD MLD+GF DDI + PK+R+ L+FSAT I Sbjct: 139 RVMDHLERQHLTLEALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPEGI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 L+ + K V++ + + QH++ I+ R V S+R +A+ +L + +++I FC Sbjct: 199 AKLSAQFMKTPVQITVQA---QHAEGKIEQRWYEVKNSERLHAVSQLLNHFRPESSIAFC 255 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ VL F +AL GEL Q+ER L + V +ATDVAARG+D+ Sbjct: 256 NTKQQCRDLVAVLQAQGFSALALYGELEQRERDQVLVQFANKSCSVLVATDVAARGLDIA 315 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +L VI+ +++ +PE +HR GRTGR +G+++ Sbjct: 316 NLAAVINVDVTPDPEVHIHRIGRTGRGDAEGLAL 349 >gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N] gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N] Length = 516 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 191/344 (55%), Gaps = 13/344 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L KDVL AQTG+GKT +F L + + L Sbjct: 11 PRVL-KAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITILGKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L +SA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDRDNAIVNILR 240 T++P I + + AV++ +A + I+ + + V + +D+ + ++R Sbjct: 187 TMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALIR 246 Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G NAI+FC+ + V K L +H F + G+L Q +R L RDG + Sbjct: 247 AEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHLL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 +A+DVAARG+D+P + V + ++ ++PE+ +HR GRTGRAGRKG Sbjct: 307 VASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKG 350 >gi|148379740|ref|YP_001254281.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC 3502] gi|153931372|ref|YP_001384037.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC 19397] gi|153936334|ref|YP_001387579.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. Hall] gi|148289224|emb|CAL83319.1| ATP-dependent RNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927416|gb|ABS32916.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. ATCC 19397] gi|152932248|gb|ABS37747.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. Hall] Length = 481 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 195/354 (55%), Gaps = 10/354 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN + I ++L + GY N + VQ+ ++ L++KD++V ++TGSGKT AF + + Sbjct: 6 FENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65 Query: 62 L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L L E D P L + PTRELA+Q+ E+ + + G + ++R+ Sbjct: 66 LELEEKD-------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ H+VVGTPGR DHI + LN+ +K VLDEADEML++GF D +E ++ PK R Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++FSATI + L K Y + +NI EN I+ V D+ + I+ Sbjct: 179 VTMLFSATIPEKVENLCKKYMNNPENININPENITTGTINQCYYEVEDKDKFYLLQKIIY 238 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 N+I+FC+TR V K + + + L G + Q++R ++ ++G + + Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKHMKKKGLNAIGLHGGMEQKDRLETMKKFKEGEFQFLVC 298 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 TDVAARGI + ++ VI+ E+ E+ +HR GRTGRAG++G+++ I N R Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVR 352 >gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45] gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45] Length = 473 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 127/350 (36%), Positives = 191/350 (54%), Gaps = 13/350 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L KDVL AQTG+GKT +F L + + L Sbjct: 11 PKVL-KAIEEAGYETPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFTLPMITALARGR- 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 69 --ARARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ +K +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + + RV +A + I+ AV S RD + + I+ Sbjct: 187 TMAPEIERITNTFLSNPERVEVARQATASETIEQGAVFFKGSRRDREATEKRDVLRQIID 246 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAIVFC+ + V K L +H + + G+L Q +R+ L RDG R+ Sbjct: 247 REGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQRTRTLDGFRDGSIRLL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 IA+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGR+G + ++ Sbjct: 307 IASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIV 356 >gi|332826518|gb|EGJ99347.1| hypothetical protein HMPREF9455_00380 [Dysgonomonas gadei ATCC BAA-286] Length = 371 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 189/340 (55%), Gaps = 1/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I AL E+GY N T +QE + L+ +D+L AQTG+GKT AF + + L + Sbjct: 7 NIIEPILRALQEKGYTNPTPIQEDAIPVVLKNQDMLGLAQTGTGKTAAFSIPIIQHLY-Q 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N AL I PTRELA+Q+ + TG+ V GGV + +L G Sbjct: 66 NKISGRKREIRALIITPTRELAIQINDCIREYTLYTGLRHCVIFGGVKQKAQTDELHKGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + ++++ + VLDEAD MLD+GF DI+ +L PK ++ L F Sbjct: 126 DILVATPGRLLDLMNQGFVSLNAITHFVLDEADRMLDMGFIHDIKRLLPKLPKDKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ PAI L+++ ++ VRV +A + I+ V D+ + ++N+L+ + Sbjct: 186 SATMPPAIAALSRSILRNPVRVEVAPVSSVVDVIEQSVYFVEKQDKKDLLINLLKKDKKQ 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + ++L + A+ G SQ R AL + + RV IATD+AA Sbjct: 246 SVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALANFKSHKTRVLIATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ LELVI+ +L PE +HR GRTGRAG G ++ Sbjct: 306 RGIDVNQLELVINYDLPDVPETYVHRIGRTGRAGHSGTAL 345 >gi|254526904|ref|ZP_05138956.1| DbpA RNA binding domain family protein [Prochlorococcus marinus str. MIT 9202] gi|221538328|gb|EEE40781.1| DbpA RNA binding domain family protein [Prochlorococcus marinus str. MIT 9202] Length = 593 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 159/536 (29%), Positives = 260/536 (48%), Gaps = 46/536 (8%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +L +GY N T +Q+A + + +D+L AQTG+GKT AF L L L +N Sbjct: 60 QSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL-TDNKE 118 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 + L + PTRELA QV + +++ V I GG + L+ + Sbjct: 119 LNAK----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDV 174 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DHIR I H+ +VLDEADEML++GF +DIE+I+D P+ ++M++FSA Sbjct: 175 VVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSA 234 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I +AK Y D + I S ++ I + + V + +A+ IL + + Sbjct: 235 TMPSEIKNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGV 293 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + + L V L+G++ Q +R N + ++ G + +ATDVAARG Sbjct: 294 IIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARG 353 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ ++LV++ + + E HR GRTGRAGR G ++ + Q + L + Sbjct: 354 LDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRTKI 413 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIAAGFLR 422 PS + I E+ ++++ D + S+ DE + ++DVL + EK + Sbjct: 414 EEINIPSNKIINEKRMEKLI-DNVNESSLAKDENEENKSLIIDVL--DNLKEKYSMDDSN 470 Query: 423 IHRAGLCAPEEITPVSLVSGRDRF---RDDSRAFK-----------------VGGGSRDN 462 I A ++LV G F DDS K R+N Sbjct: 471 IAMAA---------INLVIGNKSFFVNDDDSWINKQNNTDRNRSNRNNNNRMRNSNRRNN 521 Query: 463 FKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ S+ + + G ++ +C S+ IN +SIG I++ D + V++ D Sbjct: 522 YQNDSFETYKFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRD 577 >gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter lacuscaerulensis ITI-1157] gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter lacuscaerulensis ITI-1157] Length = 476 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 193/347 (55%), Gaps = 13/347 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +QE + P L +DVL AQTG+GKT +F L + TLLA Sbjct: 11 PKVL-KAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFVLPMI-TLLARGR 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + G + Sbjct: 69 --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + R+ +A + I+ V++ RD + ++ Sbjct: 187 TMAPEIERITDTFLSAPARIEVARQATASETIEQGVVMIKGGRRDREGSTKRKVLRALID 246 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAI+FC+ + V K L ++ + A+ G+L Q R+ L+ R+G R Sbjct: 247 AEGDKCTNAIIFCNRKTDVDITAKSLKKYGYDAAAIHGDLDQSVRTRTLEGFREGSLRFL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +A+DVAARG+D+P + V + ++ S+PE+ +HR GRTGRAGR+G ++ Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPSHPEDYVHRIGRTGRAGREGKAI 353 >gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11] gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11] Length = 501 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 202/378 (53%), Gaps = 18/378 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY + T +Q + P L +DVL AQTG+GKT +F L + TLLA Sbjct: 11 PKVL-KAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + G + Sbjct: 69 --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFKEQDALIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L +S +K +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + R+ +A + +I VL S RD + +++ Sbjct: 187 TMAPEIERITNTFLSAPERIEVARQATTSENITQGVVLFKASRRDREGSEKRKLLRHLID 246 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAI+FC+ + V K L ++ + + G+L Q +R L R+G R Sbjct: 247 QEGEKCTNAIIFCNRKTDVDICAKSLKKYGYNAAPIHGDLDQSQRMKTLDEFREGNLRFL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +A+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G ++ + ++ E Sbjct: 307 VASDVAARGLDVPTVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGTAMMICVPKDEKNLED 366 Query: 359 LFREANVSVVWEPAPSVE 376 + R +V + P +E Sbjct: 367 IER-----LVQQEIPRIE 379 >gi|163839948|ref|YP_001624353.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] gi|162953424|gb|ABY22939.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 565 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 129/353 (36%), Positives = 193/353 (54%), Gaps = 13/353 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I EAL++ G V+ +Q L L D++ A+TG+GKT+ FG+ + + A Sbjct: 42 NVRADIVEALADAGIVHPFPIQSMTLPVALGGHDIIGQAKTGTGKTLGFGVPVLQRVTAP 101 Query: 66 NDRFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 D A AP AL + PTRELAVQV +L+ K G + GG + + L Sbjct: 102 KDEGYDALPVPGAPQALIVVPTRELAVQVANDLQTAARKRGARITTIYGGRAFEPQIESL 161 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G +VVGTPGRL D + + LN+ +++ VVLDEADEMLDLGF D+E ++ ++P R+ Sbjct: 162 TKGVEVVVGTPGRLIDLFKQRHLNLKNVRMVVLDEADEMLDLGFLPDVETLMAATPAVRQ 221 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAI 235 ++FSAT+ I +A+ Y + A + R + YRA + D+ + Sbjct: 222 TMLFSATMPGPIVAMARRYMTQPTHIRAADPDDEGLTKRDIRQLVYRAHSM---DKIEVV 278 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 IL+ G I+F T+ + ++ + LAE F A+ G+L Q R AL+ R+ + Sbjct: 279 ARILQARGRGRTIIFTKTKRTAAKVAEELAERGFASAAIHGDLGQGAREQALRAFRNNKV 338 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V +ATDVAARGID+ D+ VI+ + + + LHR GRTGRAG KG +V + Sbjct: 339 DVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFV 391 >gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603] gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603] Length = 509 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L D+L AQTG+GKT AFG+ L ++ E Sbjct: 15 QTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIEKVVGE------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L+ V V GG+ + R+ + L+ G IVVGTP Sbjct: 68 QGVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI TL + + K + + ID +V ++ + N L H + AIVF Sbjct: 188 AIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|307245436|ref|ZP_07527524.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247549|ref|ZP_07529593.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254390|ref|ZP_07536228.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256597|ref|ZP_07538378.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258849|ref|ZP_07540581.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261031|ref|ZP_07542713.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263212|ref|ZP_07544832.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306853777|gb|EFM85994.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855914|gb|EFM88073.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862689|gb|EFM94645.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865007|gb|EFM96909.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867200|gb|EFM99056.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869333|gb|EFN01128.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871429|gb|EFN03153.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 593 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 138/402 (34%), Positives = 215/402 (53%), Gaps = 10/402 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 + +Q+ + L +DVL AQTGSGKT AF L L LA+ D P L +APT Sbjct: 4 SPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQID--PTKRHPQMLVMAPT 57 Query: 84 RELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142 RELA+QV E GV V GG + R L+ G+ +VVGTPGR+ DHIR Sbjct: 58 RELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRG 117 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 L++S L+++VLDEADEML +GF DD+E ++ P+ + +FSAT+ I + + + + Sbjct: 118 TLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRFMQ 177 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 D V I + R DI LV +++A++ L AI+F T+ T+ Sbjct: 178 DPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITE 237 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 + + ++ AL+G+++QQ R L ++ GR + +ATDVAARGID+ + LV++ ++ Sbjct: 238 LCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVVNFDIP 297 Query: 323 SNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFREANVSVVWEPAPSVEAIR 379 + E+ +HR GRTGRAGR G + +FV P+ + R E L ++ V + A R Sbjct: 298 LDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEVAIPNHEILMAKR 357 Query: 380 ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 + + L ++ + + D+ A D E++AA + Sbjct: 358 REKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 399 >gi|251778643|ref|ZP_04821563.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082958|gb|EES48848.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 480 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 197/366 (53%), Gaps = 6/366 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY + VQE + LR KD++V +QTGSGKT +FG+ L + + ++ Sbjct: 16 KAIDNLGYKTPSEVQEKAIPEVLRNKDLVVKSQTGSGKTASFGIPLCEKIDWDENK---- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L +APTRELAVQ+ ++ + + G S+ + R L+ HIVVGTP Sbjct: 72 --PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQKTHIVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L++S + V+DEADEML++GF +E I+ PKKR L+FSATI Sbjct: 130 GRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTLLFSATIPDE 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L + + + I S+N ++ + A V + + +++ NIL + ++VFC Sbjct: 190 IKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDSLNNILISEMPETSVVFCR 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +V + L + + + G + Q++R + ++ R G R+ +ATD+A+RGID+ Sbjct: 250 TKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVATDIASRGIDIEG 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ E +HR GRTGRAG KG+++ + R + + + Sbjct: 310 ITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIEEYIGFKLEVKNL 369 Query: 373 PSVEAI 378 PS E I Sbjct: 370 PSKEEI 375 >gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652] gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652] Length = 527 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 189/345 (54%), Gaps = 10/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + A+++ GY T +Q + L +D+ AQTG+GKT +F L + S L R Sbjct: 33 QKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRAR 92 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P L + PTRELA QV E + VA+ IGGVS + R L+ GA ++ Sbjct: 93 ---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGADVL 149 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH L +S ++ +V+DEAD MLD+GF DIE I P R+ L FSAT Sbjct: 150 ICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSAT 209 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHG 243 + P I LA + ++ R+ +A + R VA +D +LR Sbjct: 210 MPPEIQKLADRFLQNPERIEVAKPASTAKTVTQR--FVASHSKDYEKRAVLRELVRAQTE 267 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG ++ +A+DV Sbjct: 268 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQLLVASDV 327 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 328 AARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 372 >gi|134094897|ref|YP_001099972.1| ATP-dependent RNA helicase DbpA [Herminiimonas arsenicoxydans] Length = 506 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 138/392 (35%), Positives = 209/392 (53%), Gaps = 20/392 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73 L GY +TS+Q L L+ +D++ A+TGSGKT AFG+ + L +P Sbjct: 61 LDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQKL-------NPTWF 113 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A L I PTRELA QV EL L +A ++ +C GG + + L++GAHIVVGT Sbjct: 114 AIQGLVICPTRELADQVSNELRRLARFADNIKILTLC-GGAPMRPQIASLEHGAHIVVGT 172 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI +N+S ++ +VLDEAD M+D+GF ++I I+ + P++R+ L+FSAT Sbjct: 173 PGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQTLLFSATYPD 232 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I + + +D V V + + QH D I+ R V DR+ A+ +L+++ + + Sbjct: 233 DIRKASAEFLRDPVEVKVEA---QHDDSQIEQRFYEVGYDDRNAAVATLLKHYRPVSTLA 289 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ L F +AL GEL Q+ER L + + V +ATDVAARG+D Sbjct: 290 FCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVATDVAARGLD 349 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + L VI+ ++S + E +HR GRTGR KG+++ + N ++ + + W Sbjct: 350 IQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIEEYQQKPAQW 409 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 S E D L P+ I G +K Sbjct: 410 FDLKSAEPAEGGD----LHAPMVTLCIMGGKK 437 >gi|86133600|ref|ZP_01052182.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] gi|85820463|gb|EAQ41610.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] Length = 373 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 197/359 (54%), Gaps = 13/359 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +++ E G T +QE + L+ D + AQTG+GKT AFGL + + A +D Sbjct: 15 KSIKEIGITKPTDIQEKAIPVLLKSPTDFIGLAQTGTGKTAAFGLPVLHHIDANSDHIQ- 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL ++PTREL Q+ ++L Y + + GG + R+ +L+ HIV+ Sbjct: 74 -----ALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGGEKIDRQMNNLKRTTHIVI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSAT 188 TPGRL D I ++ISH+K V+LDEADEML +GF+ D+ IL + K R+ +FSAT Sbjct: 129 ATPGRLIDLIERGAVDISHVKTVILDEADEMLSMGFKQDLNRILKFTTKSDRKTWLFSAT 188 Query: 189 ISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 + I + K Y +A R+ I +++I ++ L ++ IV L A+ Sbjct: 189 MPDEIKRIVKTYMDANAPRIEINKNTLVNANIRHQFAKTTLKEKVADIVTFLEKRQAQRG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+A K L + F AL G++ Q+ER ++ ++ + I+TDV+ARG Sbjct: 249 IIFCRTKAGAQNLAKQLVDEGFSAAALEGDMQQKERDKVMRAFKNESLQYLISTDVSARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANV 365 ID+ +LE VIH +L E HRSGRT RAG+ G S+ F++P ++ + +L +E N+ Sbjct: 309 IDVRELEFVIHHQLPEQLEYYTHRSGRTARAGKTGTSLAFILPSELE-KIHQLQKELNI 366 >gi|333030556|ref|ZP_08458617.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] gi|332741153|gb|EGJ71635.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM 18011] Length = 378 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 193/345 (55%), Gaps = 5/345 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS----- 60 NI + I +AL+E+GY T +QE + P + +D+L AQTG+GKT AF + + Sbjct: 7 NIIEPILQALTEKGYSTPTPIQEQAILPAIDHQDILGLAQTGTGKTAAFSIPIIQHLHLD 66 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 +L E + A AL + PTRELA+Q+G L+ T + V GGV + Sbjct: 67 SLQKEGEEKIAKRAIRALILTPTRELAIQIGESLKDYTRYTDLQYTVIFGGVKQGSQVNR 126 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G I+V TPGRL D + + I+ ++ VLDEAD MLD+GF DI+ +L PK R Sbjct: 127 LKAGVDILVATPGRLLDLMHQGHIKINKVQHFVLDEADRMLDMGFIHDIKRLLPRLPKNR 186 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L FSAT+ +I +L+++ K+ +R+ + + I+ V +D+ + +V +L Sbjct: 187 QTLFFSATMPRSIASLSRSILKNPIRIEVTPASSVVDTIEQEVYFVEQNDKKDLLVKLLH 246 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 K+ +VF T+ ++ K + + + G SQ R AL+ + + RV +A Sbjct: 247 EGDMKSVLVFSRTKHGANKIVKAITKAGITSEPIHGNKSQNARQRALENFKAHKTRVLVA 306 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TD+AARGID+ +LELV++ +L + PE +HR GRTGRAG G ++ Sbjct: 307 TDIAARGIDIENLELVVNYDLPNIPETYVHRIGRTGRAGNVGKAL 351 >gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA] Length = 392 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 192/340 (56%), Gaps = 3/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GYVN T +Q + L KD+L AQTG+GKT AF + + L A+ Sbjct: 27 NITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQQLQAD 86 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + A L + PTRELA+Q+ ++ T V V GGV+ + L G Sbjct: 87 RNLNKSIKA---LILTPTRELALQISECIDDYARYTQVCHGVIFGGVNQRTQVNMLHKGV 143 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + + +++++ VLDEAD MLD+GF DI+ +L PK+++ L+F Sbjct: 144 DILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLLF 203 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +L + K V+++I ++ I+ V ++ +++IL + Sbjct: 204 SATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVYFVEKKEKSKLLISILHKTQGQ 263 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + R +VL + A+ G SQ R +AL+ + G+ RV IATD+AA Sbjct: 264 SVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATDIAA 323 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L LVI+ +L PE +HR GRTGRAG G ++ Sbjct: 324 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTAL 363 >gi|161613874|ref|YP_001587839.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168230079|ref|ZP_02655137.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471340|ref|ZP_03077324.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|161363238|gb|ABX67006.1| hypothetical protein SPAB_01610 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194457704|gb|EDX46543.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335550|gb|EDZ22314.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 457 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 207/367 (56%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P+ R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APSVEAI 378 AP+ +++ Sbjct: 369 APARQSL 375 >gi|17545341|ref|NP_518743.1| ATP-dependent RNA helicase DbpA [Ralstonia solanacearum GMI1000] gi|17427633|emb|CAD14152.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum GMI1000] Length = 465 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 192/339 (56%), Gaps = 9/339 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L + Sbjct: 17 PAVLAN-LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTR 73 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF A+ + PTRELA QV +E+ L A+ V V GG + + L++GAH Sbjct: 74 RFDVQ----AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAH 129 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L + LK +VLDEAD MLD+GF DDI ++ P +R+ L+FS Sbjct: 130 VVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLFS 189 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I L++ ++ V + E S I R V +R +A+ +L+++ + Sbjct: 190 ATYPDGIAKLSRQILRNPKEVKL-EERHDDSKIRQRFYEVTDDERLHAVGLLLKHYRPVS 248 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 + FC+T+ VL F +AL GEL Q+ER L + V +ATDVAAR Sbjct: 249 TLAFCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAAR 308 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+D+ LE VI+ +++ +PE +HR GRTGRA + G ++ Sbjct: 309 GLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWAL 347 >gi|239623931|ref|ZP_04666962.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium 1_7_47_FAA] gi|239521962|gb|EEQ61828.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium 1_7_47FAA] Length = 481 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 203/378 (53%), Gaps = 8/378 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ Q I +AL+ GY T +QEA++ L +D+ +QTG+GKT+AF + + + E Sbjct: 9 NLSQPILDALTLLGYTTPTPIQEAVIPKALNGQDIAARSQTGTGKTLAFAVPICEQAVWE 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P AL + PTRELAVQV RE+ + K + V GG + ++ + L+ + Sbjct: 69 EN------LPQALVLEPTRELAVQVSREIFLVGRKKRLKVPAVFGGFPIDKQIQTLRQKS 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIV GTPGR+ DH+R L +S ++ +V+DEAD MLD+GF D++ IL PK R +F Sbjct: 123 HIVTGTPGRVMDHLRRGSLCLSKVRFLVIDEADLMLDMGFLDEVRQILSLLPKDRSTFLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L +AV +++ E + V ++ NA NIL Sbjct: 183 SATLDRQVRELMGEAVSEAVFISMEDEVKVPPATQQSVYQVLQENKYNAFKNILIKENPD 242 Query: 246 NAIVFCSTRASVS-RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + ++FC TR V+ F K+ + +F + GE+ Q ER + R G R IATDVA Sbjct: 243 SCMIFCGTREMVNVLFQKLRRDRIF-CGMIHGEMEQAERLKHVDAFRRGGFRYLIATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D + LV++ + + E +HR GRTGR G+ G +V ++ ++ R +++ Sbjct: 302 ARGVDFEGISLVVNYDFPTGRETYVHRIGRTGRNGQSGRAVSLVTEDELRMLKKVEEYME 361 Query: 365 VSVVWEPAPSVEAIRERD 382 ++ P P + E++ Sbjct: 362 TTLPVNPLPEPDQAEEKE 379 >gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521] gi|74699927|sp|Q4P3U9|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3 gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521] Length = 551 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 120/345 (34%), Positives = 197/345 (57%), Gaps = 8/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IPQ++ EA + G+ + T +Q + L+ +DV+ AQTGSGKT AF + + L Sbjct: 112 IPQIV-EACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNP 170 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F A +APTRELA Q+ +++E L + GV A +GG+ + + L H Sbjct: 171 KPF------FACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPH 224 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH+ KG ++ L+ +V+DEAD +LD+ F I+ +L S P++RR ++F Sbjct: 225 VIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTMLF 284 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ VRV + ++ S + + + + +D +V++ Sbjct: 285 SATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYMFMPFAHKDTYLVHLANEQAGH 344 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + IVF T R + +L F + L G+LSQQ R AL + G + +ATDVA+ Sbjct: 345 SIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVAS 404 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P ++LV++ ++ +N ++ +HR GRT RAGR G SV ++ Q Sbjct: 405 RGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQ 449 >gi|313682309|ref|YP_004060047.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM 16994] gi|313155169|gb|ADR33847.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM 16994] Length = 450 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 202/354 (57%), Gaps = 18/354 (5%) Query: 1 MKIFEN----IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56 M FE IP + EAL + +TS+Q L L++KD + A TGSGKT+AFGL Sbjct: 1 MSTFETLALRIP--LKEALKRLEFTQMTSIQSQALPVILQKKDCIAQAATGSGKTLAFGL 58 Query: 57 ALASTLLAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSV 114 + +R +P S +L + PTRELA QV + + L ++ G + V GGV + Sbjct: 59 GVL-------ERINPKSFGTQSLILCPTRELAEQVAKVIRSLASEIGNIKVLTLCGGVPM 111 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L++GAHI+VGTPGR+ ++ + + + ++ VVLDEAD+M+D+GF +DI IL Sbjct: 112 KGQIHSLKHGAHIIVGTPGRVLKLLQMETFDPAQIQTVVLDEADQMIDMGFIEDITSILG 171 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 +P R+ L+FSAT +I T+ ++ KD V V A + I+ A L +D+ A Sbjct: 172 FTPPSRQSLLFSATFPESIQTITSDFMKDPVMVT-AEHSLSKPKIEEIAYLC--NDKLPA 228 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 I +L+ HG N I+FC+T+ + + L + L G++ Q +R+ A+ R+ Sbjct: 229 ISMVLQLHGITNTIIFCNTKVDANALCEDLNRIGVHALTLHGDMEQFDRNEAIIQFRNLS 288 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A + +ATDVA RGID+ L+ +I+ E+ E HR GRTGRAG+ G+++ ++ Sbjct: 289 APILVATDVAGRGIDIEGLDAIINYEVPIQNERYTHRIGRTGRAGKNGIAITLV 342 >gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu003] gi|308331209|gb|EFP20060.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu003] Length = 563 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 170/539 (31%), Positives = 277/539 (51%), Gaps = 54/539 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ + GY + T++Q A + + DV+ AQTG+GKT AF + + S + + Sbjct: 22 PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79 Query: 68 RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P AL + PTRELA+QV GR +L + + V GG S + L+ Sbjct: 80 -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DH+ L++S + +VLDEADEML +GF DD+E IL +P+ +++ Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ PAI L+ Y D V ++ +I + VA + +A+ +L Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVDENISQSYIQVA--RKMDALTRVLEVEP 249 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ + + L F A+SG++ Q +R + +RDG + +ATDV Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360 AARG+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ + + E+ Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412 R+ ++ P+VE + + QR+ + F DSI G E +++V+ +HD Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRVAK---FADSITNALGGPGIELFRRLVEEYEREHD 420 Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 IAA R G L AP+ P+S + R R + R + + Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 + ++VG + K ++ + G++R G IR+ PD + VE+ A L R T+K Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526 >gi|168235783|ref|ZP_02660841.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168819458|ref|ZP_02831458.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194736572|ref|YP_002114683.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712074|gb|ACF91295.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291228|gb|EDY30581.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205343740|gb|EDZ30504.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085851|emb|CBY95627.1| ATP-dependent RNA helicase DBP2 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 457 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 207/367 (56%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P+ R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APSVEAI 378 AP+ +++ Sbjct: 369 APARQSL 375 >gi|308071529|ref|YP_003873134.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681] gi|305860808|gb|ADM72596.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681] Length = 481 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 203/371 (54%), Gaps = 6/371 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ALS GY T +Q ++ L +KD++ +QTGSGKT A+G+ + L+ N+ Sbjct: 15 IVRALSSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPICE-LVDWNE--- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P AL + PTRELA+QV ++ + + G H ++ +L+ H+ VG Sbjct: 71 --NKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELKQRTHVAVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI L++ + +V+DEADEML++GF + ++ I+ + P R ++FSAT Sbjct: 129 TPGRVLDHIERGTLSLDRIAYLVIDEADEMLNMGFIEQVQSIIQALPSDRVTMLFSATFP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + TL++ Y D V++ I + + ID+ + V SD+ + ++L + I+F Sbjct: 189 EDVATLSRKYMNDPVKIEIKATGITTATIDHSLIQVKESDKLALLQDLLIVENPDSCIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ +V + LA+ + + G + Q ER + R G+ R IATDVAARGID+ Sbjct: 249 CRTQENVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIATDVAARGIDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ VI+ ++ E+ +HR+GRTGRAG+ G ++ +I RR + ++ Sbjct: 309 TNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAISLITPKDGRRLADIEAYIGFAIPQV 368 Query: 371 PAPSVEAIRER 381 APS EA+ R Sbjct: 369 KAPSEEAVDLR 379 >gi|229065102|ref|ZP_04200395.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603] gi|228716131|gb|EEL67850.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603] Length = 481 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D PKKR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPKDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ + ++ + + +I + I+FC T Sbjct: 192 EKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREEEKLSLLKDITTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFQQLKRINYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ + R E + + AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|163943135|ref|YP_001648019.1| DEAD/DEAH box helicase domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|163865332|gb|ABY46391.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis KBAB4] Length = 481 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 120/365 (32%), Positives = 197/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D PKKR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPKDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ + ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMKEEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ + R E + + AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|296102188|ref|YP_003612334.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056647|gb|ADF61385.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 457 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 135/374 (36%), Positives = 205/374 (54%), Gaps = 20/374 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA----STL 62 +P + L+E GY+ +T VQ A L L +DV V A+TGSGKT AFGL L +TL Sbjct: 10 LPAAQLDNLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQHIDATL 69 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRD 120 L +L + PTRELA QV EL L + ++ +C GG +R Sbjct: 70 LQTQ----------SLVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDS 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 LQ+ HI+V TPGRL DH++ +++ L+ +V+DEAD MLD+GF D I+ ++ +P+ R Sbjct: 119 LQHAPHIIVATPGRLLDHLQKSTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPEDR 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT AI ++ QK+ + + I S + + I+ + + + + +L Sbjct: 179 QTLLFSATWPDAIAAISGRVQKNPLTIEIDSVDALPA-IEQQFFETSQQGKIPLLQKLLS 237 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H + +VFC+T+ L ++L G+L Q++R L +G ARV +A Sbjct: 238 QHQPASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359 TDVAARG+D+ LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L Sbjct: 298 TDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIL 356 Query: 360 FREANVSVVWEPAP 373 + + W P Sbjct: 357 SEMLQIKLNWVNTP 370 >gi|262280249|ref|ZP_06058033.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Acinetobacter calcoaceticus RUH2202] gi|262258027|gb|EEY76761.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) [Acinetobacter calcoaceticus RUH2202] Length = 640 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 212/379 (55%), Gaps = 15/379 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ T+VQE + L KD+LVS+QTGSGKT AF LA ++ Sbjct: 12 ETLQQALEGLGFTTPTTVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAGQESV 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + DR + P L I+PTRELA QV ++ + + GV +A +GG+ ++ + L Sbjct: 72 VPFKDRMKAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGMPFAKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + + + + A+++DEAD MLDLGF +D+E I + + +++ Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISELAANRKQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA KD +R+ I + + ++DI + + + L Sbjct: 191 TLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLS 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 DENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAER 358 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ + + + RA Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRERGKIRALE 370 Query: 359 LFREANVSVV----WEPAP 373 + EA +SV EP+P Sbjct: 371 EYLEARLSVSEIEGLEPSP 389 >gi|256831947|ref|YP_003160674.1| DEAD/DEAH box helicase domain-containing protein [Jonesia denitrificans DSM 20603] gi|256685478|gb|ACV08371.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM 20603] Length = 544 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 192/345 (55%), Gaps = 13/345 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN----DRF 69 AL+ G V+ +Q L L D++ A+TG+GKT+ FGL L + ++A D+ Sbjct: 37 ALASAGIVSPFPIQSLTLPVALSGHDIIGQAKTGTGKTLGFGLPLLNRVVAPGEEGFDQL 96 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P A+ I PTRELAVQV ++LE + V + GG + + L G +VV Sbjct: 97 PAPGKPQAVVIVPTRELAVQVAKDLELASSTRSVRIVQLYGGRAYEPQIAALNRGVEVVV 156 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D ++ K L + +VLDEADEMLDLGF D+E IL +P R+M++FSAT+ Sbjct: 157 GTPGRMIDMLKQKHLTLLRAGVIVLDEADEMLDLGFLPDVEKILAQTPAVRQMMLFSATM 216 Query: 190 SPAITTLAKNYQKDAVRV------NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 A+ +A+ Y + ++ S + + + YRA + D+ I IL+ G Sbjct: 217 PGAVVAMARRYMNQPTHIRAQDPEDLGSTVKNITQVVYRAHPL---DKVEMIARILQARG 273 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +++F T+ + ++ L E F AL G+L Q R AL+ R+G+ V +ATDV Sbjct: 274 RGLSVIFTRTKRNAAKVADELTERGFAAGALHGDLGQGAREQALRAFRNGKVDVLVATDV 333 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ ++ VI+ ++ + + LHR+GRTGRAG KG +V + Sbjct: 334 AARGIDVENVTHVINYQVPEDDKVYLHRTGRTGRAGNKGTAVTFV 378 >gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916] gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916] Length = 599 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 196/340 (57%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+E+GY + +Q A + +D++ AQTG+GKT AF L L L + A Sbjct: 56 KTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLQKD------A 109 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + P AL +APTRELA+QV + A + V GG + L+ G +VVGT Sbjct: 110 TKPQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGGSDFRSQIHALKRGVDVVVGT 169 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L+ + L+++VLDEADEML +GF DD+E+ILD P++R++++FSAT+ Sbjct: 170 PGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPS 229 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+K Y ++ + I ++ ++ I R + + S + A+ +L + I+F Sbjct: 230 EIRRLSKRYLREPAEITIKTKEKEARRIRQRCITLQNSHKLEALNRVLEAVTGEGVIIFA 289 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A ++ L V L+G++ Q +R ++ +R G + +ATDVAARG+D+ Sbjct: 290 RTKAITLNVSESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAARGLDVD 349 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + LVI+ ++ + E +HR GRTGRAGR G ++ FV P+ Sbjct: 350 RIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPR 389 >gi|13470499|ref|NP_102068.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099] gi|14021241|dbj|BAB47854.1| probable ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099] Length = 527 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 201/366 (54%), Gaps = 8/366 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+++ GY T +Q + L KD+L AQTG+GKT +F L + + L Sbjct: 21 PKVLS-AVTDAGYTVPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPMLTRLEKGRA 79 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P L + PTRELA QV + +A+ IGGVS + + L+ GA + Sbjct: 80 R---ARMPRTLILEPTRELAAQVEENFVKYGKNHKLNIALLIGGVSFDEQDKKLERGADV 136 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I + P R+ L FSA Sbjct: 137 LIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQTLFFSA 196 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA- 244 T+ P IT L + + VRV ++ ++I R V D+ + N+++ A Sbjct: 197 TMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIKAEDAE 256 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + VS + L ++ F AL G++ Q+ R L RDG+ R +A+DV Sbjct: 257 LKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYLVASDV 316 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G S + ++ + + + R Sbjct: 317 AARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDAIERLI 376 Query: 364 NVSVVW 369 + W Sbjct: 377 GNKIEW 382 >gi|167035990|ref|YP_001671221.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida GB-1] gi|166862478|gb|ABZ00886.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1] Length = 461 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 211/376 (56%), Gaps = 15/376 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY ++T +Q L L+ +D++ A+TGSGKT AFG+ L + + N R+ A Sbjct: 21 LDALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +EL L A+ + + GGVS+ + L++GAHI+VGTPG Sbjct: 78 ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+ L + L +VLDEAD MLD+GF D I I+ +P +R+ L+FSAT I Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPARRQTLLFSATYPAGI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA ++ ++ +V + S H+D I+ R + + R A+ +L ++ ++ + FC Sbjct: 195 KQLAADFMRNPQQVKVES---LHTDNQIEQRFIEIDPQHRLEAVTRVLGHYRPQSCVAFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L AL G+L Q++R L M + + V +ATDVAARG+D+ Sbjct: 252 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ RA+ + + W+ Sbjct: 312 GLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAIEDLQKSPLRWD- 370 Query: 372 APSVEAIRERDAQRIL 387 S+++++ + + +L Sbjct: 371 --SLDSLKNKGGEPLL 384 >gi|126726299|ref|ZP_01742140.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150] gi|126704162|gb|EBA03254.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150] Length = 438 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 121/346 (34%), Positives = 194/346 (56%), Gaps = 3/346 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + LS +G+ + T +Q + L +D++ AQTG+GKT AFGL + L Sbjct: 5 PRIL-DRLSSKGFTDPTPIQSQAIPHILNGRDIMGLAQTGTGKTAAFGLPILHHLWHVGT 63 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + SA AL +APTRELA Q+ L T + VA+ +GGVS++ + + LQ G + Sbjct: 64 KPEDRSA-RALILAPTRELASQITENLLIFSRDTHLKVALVVGGVSINTQIKRLQKGTDV 122 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + + + +S + +VLDEAD+MLD+GF D+ I P++R+ +MFSA Sbjct: 123 LVATPGRLLDLLNRRAITLSDARYLVLDEADQMLDMGFIHDLRKISTHLPEERQTMMFSA 182 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ + LA+ Y +RV ++ + + + D+ + +L H + A Sbjct: 183 TMPKLMGELAETYLNSPLRVQVSPPGKAADKVTQEVHFMLQGDKGQHLKKLLGNHREERA 242 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ + K L F ++ G SQ +R+ AL+ + G ++ +ATDVAARG Sbjct: 243 LVFSRTKHGAEKLKKGLVAVGFAAASIHGNKSQGQRTRALEEFKSGEVKILVATDVAARG 302 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ID+P + V + +L + PEN +HR GRT RAG +G ++ F P M Sbjct: 303 IDIPQVMYVYNYDLPNVPENYVHRIGRTARAGAEGTAIAFCSPDEM 348 >gi|78776809|ref|YP_393124.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251] gi|78497349|gb|ABB43889.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM 1251] Length = 432 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 189/335 (56%), Gaps = 3/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY T++Q + L + DV +AQTG+GKT AFGL + L +D Sbjct: 15 AIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGMLQRLRKTSD--DKQR 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A L IAPTREL++Q+ +L+ G+ +AV +GG + +++ L+ G IV+ TPG Sbjct: 73 ALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKILKEGVDIVIATPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+ KGL++SH++ VLDEAD MLD+GF +I I PK+ + L+FSAT S + Sbjct: 133 RVLEHV-DKGLSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRHQTLLFSATFSDKV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+K + + +N I+ A LV + + I+ + +VF T Sbjct: 192 RKLSKLILTKPAFIETSKKNSTVDTINQVAYLVDTEKKAPLLAYIIGSRNFRQVLVFTRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 +AS L + + + G+ +Q R L ++G+ +V +ATD+A+RG+D+ +L Sbjct: 252 KASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVLVATDIASRGLDIEEL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VI+ EL S PE+ +HR GRTGRAGR GM++ +I Sbjct: 312 PFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLI 346 >gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1] gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1] Length = 518 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 191/344 (55%), Gaps = 13/344 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L KDVL AQTG+GKT +F L + + L Sbjct: 13 PRVL-KAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITILGKGRA 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + + A+ IGGVS + + + G + Sbjct: 72 R---ARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDV 128 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L +SA Sbjct: 129 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSA 188 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDRDNAIVNILR 240 T++P I + + AV++ +A + I+ + + V + +D+ + ++R Sbjct: 189 TMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALIR 248 Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G NAI+FC+ + V K L +H F + G+L Q +R L RDG + Sbjct: 249 AEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHLL 308 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 +A+DVAARG+D+P + V + ++ ++PE+ +HR GRTGRAGRKG Sbjct: 309 VASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKG 352 >gi|325274041|ref|ZP_08140194.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp. TJI-51] gi|324100824|gb|EGB98517.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp. TJI-51] Length = 504 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 154/505 (30%), Positives = 257/505 (50%), Gaps = 28/505 (5%) Query: 50 KTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAV 107 KT AF L + + + P AL +APTRELA+QV E YAK GV V Sbjct: 1 KTAAFALPILNKIDVSK------REPQALILAPTRELALQVATAFET-YAKQMPGVNVVA 53 Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167 GG + + R ++NGA IVV TPGRLCDH+R +S ++ +VLDEADEML LGF D Sbjct: 54 VYGGAPMGPQLRAIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMD 113 Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227 D+E I D+ P R+ ++FSAT+ +I ++A+ + ++ V I S+ + + ID ++V Sbjct: 114 DLEVIFDAIPATRQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVH 173 Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 + A++ +L I F T+ + L ++ AL+G+++Q +R + Sbjct: 174 ADQKIPAVLRLLEVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVI 233 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 ++DGR + +ATDVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ + Sbjct: 234 DSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLL 293 Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVD 405 + +R + + R V P+ +A+ + +++ PL ++ + + D Sbjct: 294 VTPRERRMLQVIERVTGQKVAEARLPNAQAVLDARIKKLTNSLAPLVAEA-EATHGDLFD 352 Query: 406 VLLAK--HDPEKIAAGFLRIHRAG----LCAPEEITPV--SLVSGRDRFRDDSRAFKVGG 457 L +A+ LR G L A E P+ S +R R+ + Sbjct: 353 RLTNDLGCSARALASALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERSERPDR 412 Query: 458 GSRDN------FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511 G R+ +G ++G++ A+ L+ + G+ R +IG I+V+ + V Sbjct: 413 GDRERRAPLPLAEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLV 472 Query: 512 EVSADGVDLLRRTVKLDK--GIQLK 534 E+ DG++ L +K + G QLK Sbjct: 473 ELPEDGLEKLLSKLKDTRVAGKQLK 497 >gi|13399860|pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii gi|13399861|pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 202/347 (58%), Gaps = 20/347 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64 N+ I A+ +G+ T +Q ++ L E +++ A+TGSGKT +F + L L+ Sbjct: 12 NLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE-LVN 70 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 EN+ A+ + PTRELA+QV E+E L + +A GG +++ + + L+N Sbjct: 71 ENNGIE------AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN- 123 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A+IVVGTPGR+ DHI LN+ ++K +LDEADE L+ GF D+E IL++ K +R+L+ Sbjct: 124 ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILL 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241 FSAT I LAK Y D + + + +++I+ V V ++R A+ +L+ + Sbjct: 184 FSATXPREILNLAKKYXGDYSFI----KAKINANIEQSYVEVNENERFEALCRLLKNKEF 239 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +G +VFC T+ L + F+ A+ G+LSQ +R +++ + + R+ IAT Sbjct: 240 YG----LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT 295 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DV +RGID+ DL VI+ L NPE+ HR GRTGRAG+KG ++ +I Sbjct: 296 DVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISII 342 >gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis H37Rv] gi|15840699|ref|NP_335736.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis CDC1551] gi|148661040|ref|YP_001282563.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra] gi|148822470|ref|YP_001287224.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis F11] gi|215403092|ref|ZP_03415273.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis 02_1987] gi|215410888|ref|ZP_03419696.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis 94_M4241A] gi|215445431|ref|ZP_03432183.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis T85] gi|218752952|ref|ZP_03531748.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis GM 1503] gi|253799702|ref|YP_003032703.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 1435] gi|254231510|ref|ZP_04924837.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis C] gi|254550260|ref|ZP_05140707.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554958|ref|ZP_06444168.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 605] gi|289744998|ref|ZP_06504376.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis 02_1987] gi|289757351|ref|ZP_06516729.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85] gi|289761405|ref|ZP_06520783.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis GM 1503] gi|297633802|ref|ZP_06951582.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 4207] gi|297730788|ref|ZP_06959906.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN R506] gi|298524756|ref|ZP_07012165.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306775422|ref|ZP_07413759.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu001] gi|306781666|ref|ZP_07420003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu002] gi|306788337|ref|ZP_07426659.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu004] gi|306792663|ref|ZP_07430965.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu005] gi|306797070|ref|ZP_07435372.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu006] gi|306802950|ref|ZP_07439618.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu008] gi|306807140|ref|ZP_07443808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu007] gi|306967339|ref|ZP_07480000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu009] gi|306971531|ref|ZP_07484192.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu010] gi|307079244|ref|ZP_07488414.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu011] gi|307083813|ref|ZP_07492926.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu012] gi|313658120|ref|ZP_07815000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN V2475] gi|1706338|sp|Q11039|DEAD_MYCTU RecName: Full=Cold-shock DEAD box protein A homolog; AltName: Full=ATP-dependent RNA helicase deaD homolog gi|1480333|emb|CAB00899.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent RNA helicase deaD homolog) [Mycobacterium tuberculosis H37Rv] gi|13880887|gb|AAK45550.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis CDC1551] gi|124600569|gb|EAY59579.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis C] gi|148505192|gb|ABQ73001.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra] gi|148720997|gb|ABR05622.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis F11] gi|253321205|gb|ACT25808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 1435] gi|289439590|gb|EFD22083.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 605] gi|289685526|gb|EFD53014.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis 02_1987] gi|289708911|gb|EFD72927.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis GM 1503] gi|289712915|gb|EFD76927.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85] gi|298494550|gb|EFI29844.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216042|gb|EFO75441.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu001] gi|308325627|gb|EFP14478.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu002] gi|308335025|gb|EFP23876.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu004] gi|308338833|gb|EFP27684.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu005] gi|308342518|gb|EFP31369.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu006] gi|308346383|gb|EFP35234.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu007] gi|308350324|gb|EFP39175.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu008] gi|308354954|gb|EFP43805.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu009] gi|308358901|gb|EFP47752.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu010] gi|308362864|gb|EFP51715.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu011] gi|308366530|gb|EFP55381.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu012] gi|323720210|gb|EGB29309.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis CDC1551A] gi|326902876|gb|EGE49809.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis W-148] gi|328459448|gb|AEB04871.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN 4207] Length = 563 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 170/539 (31%), Positives = 277/539 (51%), Gaps = 54/539 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ + GY + T++Q A + + DV+ AQTG+GKT AF + + S + + Sbjct: 22 PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79 Query: 68 RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P AL + PTRELA+QV GR +L + + V GG S + L+ Sbjct: 80 -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DH+ L++S + +VLDEADEML +GF DD+E IL +P+ +++ Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ PAI L+ Y D V ++ +I + VA + +A+ +L Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEP 249 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ + + L F A+SG++ Q +R + +RDG + +ATDV Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360 AARG+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ + + E+ Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412 R+ ++ P+VE + + QR+ + F DSI G E +++V+ +HD Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRVAK---FADSITNALGGPGIELFRRLVEEYEREHD 420 Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 IAA R G L AP+ P+S + R R + R + + Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 + ++VG + K ++ + G++R G IR+ PD + VE+ A L R T+K Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526 >gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei] gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei] Length = 402 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 192/342 (56%), Gaps = 7/342 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P KDV+ AQ+G+GKT F +++ + E+ AL Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQ------AL 101 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V + CIGG SV ++R L+NG H+VVGTPGR+ D Sbjct: 102 VMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLENGIHVVVGTPGRVGDM 161 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I L+ S +K VLDEADEML GF+D I + S P+ ++++ SAT+ + + Sbjct: 162 INRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVVLLSATMPSEVLDVTD 221 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + ++ +R+ + + I + V + + + + ++ A++FC+TR V Sbjct: 222 RFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKV 281 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + T+ + F V L G++ Q ER ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 282 DQLTEQMTNKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVI 341 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 + +L SN EN +HR GR+GR GRKG+++ + +N R+ + + Sbjct: 342 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEI 383 >gi|296272832|ref|YP_003655463.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097006|gb|ADG92956.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM 7299] Length = 452 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 124/366 (33%), Positives = 200/366 (54%), Gaps = 14/366 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + + E L GY LT +QE L L KDV+ A+TGSGKT AFG+ L + L + Sbjct: 8 NIDEKLKENLISLGYETLTKIQEESLPLILEGKDVIAKAKTGSGKTAAFGIGLLNKL--D 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 +F L + PTRELA QV EL + Y ++ +C GGV R+ L + Sbjct: 66 VKKFKTQ----CLVLCPTRELADQVAVELRRIARYKHNIKILTLC-GGVPSSRQTHSLTH 120 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAH++VGTPGR+ H+R + LN + +VLDEAD MLD+GF +DIE ++ PK+R+ L Sbjct: 121 GAHVIVGTPGRVLFHLREQNLNPESIDTLVLDEADRMLDMGFLEDIEKVISFIPKQRQTL 180 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I L+K D + S + H++ R + S +D+ ++ + + Sbjct: 181 LFSATYDENIKELSKGILVDPI---FKSVDTVHTESTIREEFIKTSRKDSVLLKLFSTYK 237 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + I+FC+T+ L + + + L + Q+ R + + + + IATDV Sbjct: 238 PSSVIIFCNTKIKCDELDTYLYDMGYDPLVLHSDFEQKTRDEIITLFSNKSYPILIATDV 297 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 A+RG+D+ D+E+VI+ +++++ HR GRT RAG+ G+++ + + + E L + Sbjct: 298 ASRGLDIDDVEMVINYDMANDTNVYTHRIGRTARAGKSGVALTLYNDYDEDKVEEL--QV 355 Query: 364 NVSVVW 369 N +V+ Sbjct: 356 NKELVY 361 >gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium yellowstonense SS-5] gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium yellowstonense SS-5] Length = 405 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 131/379 (34%), Positives = 211/379 (55%), Gaps = 30/379 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + ++L E GY T +QE + + KD++ AQTG+GKT AFG+ + Sbjct: 12 NLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIV------ 65 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ +P + AL + PTRELA+QV +E++ L V GG S+ + L+ G Sbjct: 66 -EKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKKG 124 Query: 125 AHIVV-GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 + +VV GTPGR+ D + LN+ ++K VLDEAD ML++GF DDIE I+ P+ R++L Sbjct: 125 SDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQIL 184 Query: 184 MFSATISPAITTLAK-----NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +FSAT+ I LA+ NY+ V+ + + + I YR V D+ + + Sbjct: 185 LFSATMPKEILELAEEFLNENYETIKVKPDEVTVEK-IKQIIYR---VNPRDKFKKLTEV 240 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + A+ I+F T+ + L E F A+ G+ SQ++R L R G+ ++ Sbjct: 241 LSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKIL 300 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QN 351 +ATDVAARG+D+ ++LVI+ L + E+ +HR GRTGRAGR+G ++ ++ QN Sbjct: 301 VATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTSSEDKQLQN 360 Query: 352 MQRRAERLFREANVSVVWE 370 +Q++ +AN+ V+ E Sbjct: 361 IQKKT-----KANIEVINE 374 >gi|229099881|ref|ZP_04230804.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29] gi|228683496|gb|EEL37451.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29] Length = 481 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALKKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG KG ++ I R E + + AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEIEAYIGFEIPKAYAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] Length = 439 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 129/348 (37%), Positives = 191/348 (54%), Gaps = 16/348 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 I I AL GY N T+VQ + + +D+LVSAQTGSGKT AF L A T L+E Sbjct: 7 GIAPTILRALQAAGYENPTAVQAEAVPAAIAGRDLLVSAQTGSGKTAAF-LLPALTKLSE 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRER 118 + P L + PTRELA QV G++L W+ A +GG S + Sbjct: 66 RS-TAKGQGPRVLVLTPTRELAQQVEKNALEYGKDLRWMR------TACLVGGSSFGYQI 118 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L ++V TPGRL DH+R ++ S L+ +VLDEAD MLD+GF DDIE I+ ++P+ Sbjct: 119 RALSRPIDLIVATPGRLMDHMRSGRIDFSRLEMLVLDEADRMLDMGFIDDIEAIVKATPE 178 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237 R+ ++FSAT+ + +A+ +D R+ IA I+ + L+ + + Sbjct: 179 TRQTVLFSATLDGIVGRMAEKMTRDPQRIEIARTETSGGTIEEHLLYADDLNHKHRLLDY 238 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL+ G ++F +T+A L++ + L G++ Q R+ L +R GR +V Sbjct: 239 ILKESGFDQCVIFSATKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIKV 298 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARGID+P + V++ +L E+ +HR GRTGRAGR G ++ Sbjct: 299 LVATDVAARGIDVPTITHVVNFDLPKQAEDYVHRIGRTGRAGRDGTAI 346 >gi|47568574|ref|ZP_00239273.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] gi|47554816|gb|EAL13168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] Length = 481 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 198/365 (54%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMNDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I +R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLEEIEAYIGFAIPKANAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant RNA helicase(C-terminal) (rhlE-like) [Ralstonia solanacearum CMR15] Length = 613 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 141/387 (36%), Positives = 203/387 (52%), Gaps = 35/387 (9%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL E Y T VQ + L +D+LV++QTGSGKT AF L + + + Sbjct: 41 IARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISEQPEPQR 100 Query: 71 P-----------------ASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106 P + P L + PTRELA+QV GR L +V A Sbjct: 101 PRADGPQQRVKGRRPRPEPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 154 Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166 +GG+ ++ L I++ TPGRL DHI +++S L +V DEAD MLD+GF Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214 Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226 DDIE I+ ++P R+MLMFSAT+ I LA+ ++ R+ IA+ S+I+ R Sbjct: 215 DDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFT 274 Query: 227 A-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285 LS + + ++LR K AIVF +T+ + L E F AL G++ Q R+ Sbjct: 275 DDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNR 334 Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L +R G+ RV +ATDVAARGID+PD+ V++ +L E+ +HR GRTGRAGR G+++ Sbjct: 335 TLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 394 Query: 346 FVIPQN---MQRRAERLF-REANVSVV 368 ++ RR ER R + +VV Sbjct: 395 NLVNHGDTFQWRRIERFVDRRIDATVV 421 >gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580] gi|52784366|ref|YP_090195.1| YdbR [Bacillus licheniformis ATCC 14580] gi|81691189|sp|Q65N62|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580] gi|52346868|gb|AAU39502.1| YdbR [Bacillus licheniformis ATCC 14580] Length = 487 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 133/397 (33%), Positives = 214/397 (53%), Gaps = 27/397 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ G+ T +Q + L KDV+ AQTG+GKT AFG+ L ++ + Sbjct: 14 LTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLV-------EKIN 66 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P S + A+ IAPTRELA+QV EL + V GG + R+ R L+ HI+V Sbjct: 67 PESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIV 126 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL DHI + + + + VVLDEADEML++GF +DIE IL + P + + L+FSAT+ Sbjct: 127 GTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATM 186 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +A+ + + V + ++ S+I + V + + + +L + AIV Sbjct: 187 PAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIV 246 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V T+ L + + G+L+Q +R AL+ + G V +ATDVAARG+D Sbjct: 247 FGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLD 306 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + + V + ++ +PE+ +HR GRTGRAG+ GM++ F+ P R + + R Sbjct: 307 ISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKDMLR------- 354 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405 ++E +R R ++ P ++I+G ++ VD Sbjct: 355 -----AIEQTTKRKMDR-MKAPTLDEAIEGQQQVTVD 385 >gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM 16294] gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM 16294] Length = 452 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 194/339 (57%), Gaps = 11/339 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQ++ + + GY +T +Q L L +D++ A+TGSGKT AFG+ L L + Sbjct: 10 PQML-QTIESLGYKEMTPIQAQSLPSILEGRDIIAQAKTGSGKTAAFGIGLLHHLNVKKF 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R +L + PTRELA QV +EL L + + + + GG S R+ L + AH Sbjct: 69 RVQ------SLVLCPTRELADQVAKELRRLARFQHNIKILMLSGGESFGRQLGSLAHQAH 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ H+ + L +S+L +V DEAD MLD+GF ++IE +L PK+R+ L+FS Sbjct: 123 IIVGTPGRVLKHLNKESLELSNLNTLVFDEADRMLDMGFIEEIESVLAFVPKERQTLLFS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I ++K Q +A+ V A++ Q+ + +D+ + ++ IL + +N Sbjct: 183 ATYDDEILQISKRIQNNALHVKTAAQEVQNKIVQE---FYETNDKVDTLIKILANYKPEN 239 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF +T+ + L ++ +A+ G+L Q ER++ L + V +ATDVAAR Sbjct: 240 VIVFTNTKLEAKELAESLVQNKIDALAIHGDLEQYERNDVLVQFANKSCPVLVATDVAAR 299 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+D+ DL +V++ +L + E HR GRTGRAG +G++V Sbjct: 300 GLDIKDLSMVVNYDLPHSMETYTHRIGRTGRAGAEGIAV 338 >gi|157413572|ref|YP_001484438.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9215] gi|157388147|gb|ABV50852.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9215] Length = 593 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 159/536 (29%), Positives = 259/536 (48%), Gaps = 46/536 (8%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +L +GY N T +Q+A + + +D+L AQTG+GKT AF L L L N Sbjct: 60 QSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL-TNNKE 118 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 + L + PTRELA QV + +++ V I GG + L+ + Sbjct: 119 LNAK----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDV 174 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DHIR I H+ +VLDEADEML++GF +DIE+I+D P+ ++M++FSA Sbjct: 175 VVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSA 234 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I +AK Y D + I S ++ I + + V + +A+ IL + + Sbjct: 235 TMPSEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGV 293 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + + L V L+G++ Q +R N + ++ G + +ATDVAARG Sbjct: 294 IIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARG 353 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ ++LV++ + + E HR GRTGRAGR G ++ + Q + L + Sbjct: 354 LDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRTKI 413 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIAAGFLR 422 PS + I E+ ++++ D + S+ DE + ++DVL + EK + Sbjct: 414 EEINIPSNKIINEKRMEKLI-DNVNESSLAKDENEENKALIIDVL--DNLKEKYSMDDSN 470 Query: 423 IHRAGLCAPEEITPVSLVSGRDRF---RDDSRAFKVGGGS-----------------RDN 462 I A ++LV G F DDS K R+N Sbjct: 471 IAMAA---------INLVIGNKSFFVNDDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNN 521 Query: 463 FKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ S+ + + G ++ +C S+ IN +SIG I++ D + V++ D Sbjct: 522 YQNDSFETYKFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRD 577 >gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3] gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3] Length = 545 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 126/340 (37%), Positives = 188/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ GY T +QE + L +DVL AQTG+GKT AF L L L + R A Sbjct: 15 QAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPLVERLASGRAR---A 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA QV T + + IGGVS+ + L G +++ TP Sbjct: 72 RMPRAIVLAPTRELADQVAESFAKYAKGTKLTWVLLIGGVSMGDQVAALNKGVDVLIATP 131 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL D RGK L ++ ++ +V+DEAD MLD+GF DIE I +P +R+ L FSAT+ P Sbjct: 132 GRLLDLFERGKML-LTGVEIMVVDEADRMLDMGFIPDIERIFKLTPPRRQTLFFSATMPP 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAI 248 IT L + KD R+ + I V + SD + A+ ++ +N I Sbjct: 191 EITRLTAAFLKDPTRIEASRPAMTADTITQYIVRIPTSDPKAKRAALRALMSRTDVRNGI 250 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+ ++ V K L H F A+ G+L Q R+ L R G ++ +A+DVAARG+ Sbjct: 251 VFCNRKSEVDIVAKSLKTHGFDAAAIHGDLDQSHRTKTLADFRSGALKILVASDVAARGL 310 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+PD+ V + ++S + ++ +HR GRTGRAG+ G + ++ Sbjct: 311 DIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIV 350 >gi|170719699|ref|YP_001747387.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida W619] gi|169757702|gb|ACA71018.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619] Length = 461 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 203/365 (55%), Gaps = 12/365 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY ++T +Q L LR +D++ A+TGSGKT AFG+ L + + N R+ A Sbjct: 21 LDALGYASMTPIQAQSLPVILRGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +EL L A+ + + GGVS+ + L++GAHI+VGTPG Sbjct: 78 ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+ L + L +VLDEAD MLD+GF D I I+ +P +R+ L+FSAT I Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA ++ + +V + S H+D I+ R + + R A+ +L ++ ++ + FC Sbjct: 195 EQLAADFMRKPQQVKVES---LHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L AL G+L Q++R L M + + V +ATDVAARG+D+ Sbjct: 252 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ RA+ + + W+ Sbjct: 312 GLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAIEALQKSPLRWDQ 371 Query: 372 APSVE 376 S++ Sbjct: 372 LDSLK 376 >gi|187924463|ref|YP_001896105.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN] gi|187715657|gb|ACD16881.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans PsJN] Length = 542 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 146/396 (36%), Positives = 212/396 (53%), Gaps = 41/396 (10%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----------ALASTL 62 AL+ GY N T VQ+ + + +D++VS+ TGSGKT AF L A AS Sbjct: 62 ALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIERFSQLQKAQASQP 121 Query: 63 L-------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108 A R P + P L + PTRELA+QV G+ L+ L + Sbjct: 122 REPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 175 Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 +GGV+ ++ L I+V TPGRL DH+ +++S L+ +VLDEAD MLD+GF +D Sbjct: 176 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIED 235 Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 IE I+ ++P R+ ++FSAT+ IT+L KD R+ I Q ++I V Sbjct: 236 IETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYVDD 295 Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 D +D + ++LR G AIVF +T+ + LA+ F+ AL G+L Q R+ + Sbjct: 296 RDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTI 355 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 + +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR G++V + Sbjct: 356 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 415 Query: 348 I---PQNMQRRAERLFR---EANVSVVWEP---APS 374 + Q +R ER R NV +EP APS Sbjct: 416 VHHAEQGALKRIERFVRTPLPVNVVEGFEPRKSAPS 451 >gi|88803174|ref|ZP_01118700.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Polaribacter irgensii 23-P] gi|88780740|gb|EAR11919.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Polaribacter irgensii 23-P] Length = 373 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 189/348 (54%), Gaps = 12/348 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +++ E G T +QE + L+ K D + AQTG+GKT AFGL + + ++ Sbjct: 15 KSIQELGISTPTEIQEQTIPILLKSKTDFIGLAQTGTGKTAAFGLPILHHIDTSSEHIQ- 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 L ++PTREL Q+ ++L Y + + + GG + R+ +L+ H+VV Sbjct: 74 -----TLVLSPTRELVQQIKKQLFKFTKYNEEKIFIEAVFGGEKIDRQIGNLKRTTHVVV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSAT 188 TPGRL D I ++ISH+K VVLDEADEML +GF+ D+ IL SS R +FSAT Sbjct: 129 ATPGRLIDLIERGDIDISHVKTVVLDEADEMLSMGFKQDLNRILKFSSQSDRNTWLFSAT 188 Query: 189 ISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 + I + K Y +A RV + +++I ++ V L + N I+ L G + Sbjct: 189 MPEEIKRIIKTYMDSNAPRVEVNKNALVNANIRHQFVKTTLKTKANDIITFLEKRGTQRG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+A +L E F AL G++ Q+ER ++ + + ++TDV+ARG Sbjct: 249 IIFCRTKAGAQNLANLLIEEGFSTAALEGDMQQKERDKVMRAFKKENLQYLVSTDVSARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ID+ LE VIH +L E HRSGRT RAG+ G S+ F++P +++ Sbjct: 309 IDVSGLEFVIHHQLPEQLEYYTHRSGRTARAGKTGTSLAFILPNELEK 356 >gi|228997517|ref|ZP_04157133.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17] gi|228762256|gb|EEM11186.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17] Length = 433 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 198/348 (56%), Gaps = 10/348 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 9 ISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL------- 61 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E+E L + + V GG V ++ R L+ Sbjct: 62 EKIDPESSDVQALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLKGN 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DH+R + + +S++ +VLDEAD+ML GF DIE IL+ +P+ ++ ++ Sbjct: 122 THIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTML 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y K+ + I S ++I R + + +A+ +++ Sbjct: 182 FSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQRVIETTDRAKQDALRHVMDRDQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + + L G+LSQ +R ++ RD + + IATDVA Sbjct: 242 FLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ FV P++ Sbjct: 302 ARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGESGLAITFVAPKD 349 >gi|154688021|ref|YP_001423182.1| DbpA [Bacillus amyloliquefaciens FZB42] gi|154353872|gb|ABS75951.1| DbpA [Bacillus amyloliquefaciens FZB42] Length = 479 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 191/340 (56%), Gaps = 7/340 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+ Y T VQ ++ L++KD++V +QTGSGKT AFG+ + LAE + Sbjct: 13 IRRALNGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPICE--LAEWEE-- 68 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P AL + PTRELA Q+ ++ + + G S +++ +L+ +H+V G Sbjct: 69 --NKPQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQKSHVVAG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI L + L VV+DEADEML++GF + +E I+ PK R ++FSAT+ Sbjct: 127 TPGRVLDHIEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L++ Y KD + + +E DI++ D+ + + ++L + I+F Sbjct: 187 DDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRTEEEDKTSLLRDVLITENPDSCIIF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V + T L + + G + Q++R + + + G R IATDVAARGID+ Sbjct: 247 CRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGIDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 ++ LVI+ ++ E+ +HR+GRTGRAG +G ++ FV P Sbjct: 307 ENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTP 346 >gi|160874449|ref|YP_001553765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|160859971|gb|ABX48505.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|315266685|gb|ADT93538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 411 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 192/344 (55%), Gaps = 12/344 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--- 71 L+ GY + T +Q + L ++DV+ AQTG+GKT AF L + LLA SP Sbjct: 16 LASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLA----LSPLQE 71 Query: 72 --ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P+ AL + PTRELAVQV + T + V + GGVS+ + G ++ Sbjct: 72 LTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNAGIDVL 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH+R L++ L +V DEAD MLD+GF D+I+ +L P R+ L+FSAT Sbjct: 132 IATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTLLFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247 + AI +L+K +D + +A N ++I+ + V +DR +V +++R Sbjct: 192 LDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIE-QVVYAVDADRKTELVSHLVRSKNWHQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++F T+ V + + L + A G+LSQ R LQ + G+ +V +ATDVAARG Sbjct: 251 LIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +D+ +L+ VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 311 LDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQE 354 >gi|30023480|ref|NP_835111.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|229130700|ref|ZP_04259653.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4] gi|29899041|gb|AAP12312.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|228652717|gb|EEL08602.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4] Length = 481 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAIRERDA 383 S E + + A Sbjct: 372 SKEEVMKEKA 381 >gi|229112867|ref|ZP_04242398.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15] gi|296505875|ref|YP_003667575.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] gi|228670546|gb|EEL25859.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15] gi|296326927|gb|ADH09855.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] Length = 481 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAIRERDA 383 S E + + A Sbjct: 372 SKEEVMKEKA 381 >gi|310766260|gb|ADP11210.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617] Length = 638 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 202/371 (54%), Gaps = 10/371 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E+L+ GYV + +Q + L +DVL AQTGSGKT AF L L + P Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 71 Query: 73 -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP L +APTRELAVQV + ++ G+ V GG + R L+ G +VVG Sbjct: 72 VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ L++S+L+ +VLDEADEML +GF +D+E I+ P + +FSAT+ Sbjct: 132 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI + K + KD V I S DI ++ A + +A+ L AI+F Sbjct: 192 EAIRRITKRFMKDPQEVRIQSSLTTRPDIS-QSYWTAYGRKTDALTRFLEAEDFDAAIIF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 251 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 370 Query: 371 PAPSVEAIRER 381 P+ E + +R Sbjct: 371 ELPNAELLGQR 381 >gi|228473039|ref|ZP_04057796.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga gingivalis ATCC 33624] gi|228275621|gb|EEK14398.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga gingivalis ATCC 33624] Length = 588 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 204/366 (55%), Gaps = 12/366 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 EA+ + G+ + VQ+A + P L E D++ AQTG+GKT AFG L L+ R + Sbjct: 22 EAIDDLGFERPSEVQQAAI-PVLLEAPTDMVALAQTGTGKTAAFGFPLLQ-LIDPTQRMT 79 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIV 128 L +APTREL +Q+ EL+ YAK V + GG S+ + R L+ GAHI+ Sbjct: 80 QG-----LILAPTRELCLQIASELKQ-YAKYMPQVHIVAIYGGASIEEQARSLKKGAHII 133 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGR+ D +R + +I+ + VLDEADEML++GF +DI IL +P + +FSAT Sbjct: 134 VATPGRMQDMMRREFTSIAQISYCVLDEADEMLNMGFYEDIRSILSETPDDKNTWLFSAT 193 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + +AK + + I +N+ +++ + +V R A+ + + + ++ Sbjct: 194 MPAEVAKIAKEFMHHPKEITIGHKNQASNNVLHECYIVNGRQRYEALKRLADANPSIFSV 253 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ + L E + AL G+LSQ +R ++ R + ++ +ATDVAARGI Sbjct: 254 VFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQMLVATDVAARGI 313 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ D+ VIH +L E HRSGRTGRAG+ G+S+ ++ ++ +R + + + + Sbjct: 314 DVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSEAKRIKTIEKIIQKTFE 373 Query: 369 WEPAPS 374 ++ PS Sbjct: 374 YKSIPS 379 >gi|237731652|ref|ZP_04562133.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2] gi|226907191|gb|EEH93109.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2] Length = 457 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 138/381 (36%), Positives = 209/381 (54%), Gaps = 12/381 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P E L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A Sbjct: 10 LPAAQLENLNELGYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHIDAA- 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 F S L + PTRELA QV EL L + ++ +C GG +R LQ+ Sbjct: 69 -LFQTQS----LVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHA 122 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HI+V TPGRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+ Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT AI ++ Q++ + + I + + + I+ + + + + +L H Sbjct: 183 FSATWPEAIAAISGRVQQNPLTIEIDTVDALPA-IEQQFFETSSHGKIPLLQKLLSQHQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VFC+T+ L ++L G+L Q++R L +G ARV +ATDVA Sbjct: 242 ASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARG+D+ LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANILSEML 360 Query: 364 NVSVVWEPAPSVEAIRERDAQ 384 + + W AP+ +I +A+ Sbjct: 361 QLKLNWLTAPANGSILPLEAE 381 >gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp. holarctica LVS] gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp. holarctica OSU18] gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010493|ref|ZP_02275424.1| hypothetical protein Ftulh_07207 [Francisella tularensis subsp. holarctica FSC200] gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp. holarctica 257] gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella tularensis subsp. holarctica URFT1] gi|295312305|ref|ZP_06803094.1| DEAD/DEAH box helicase domain-containing protein [Francisella tularensis subsp. holarctica URFT1] gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp. holarctica LVS] gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp. holarctica OSU18] gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp. holarctica 257] gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 569 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + LA D Sbjct: 16 QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + E + CI GG + R L+ G Sbjct: 76 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD++F+L ++ + L+FS Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVQFVLSHVSEQCQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S L ++V A++G++ Q +R + R ++ + +ATDV AR Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353 >gi|229148341|ref|ZP_04276624.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24] gi|228635135|gb|EEK91682.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24] Length = 481 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAIRERDA 383 S E + + A Sbjct: 372 SKEEVMKEKA 381 >gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23] gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23] Length = 513 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/330 (38%), Positives = 184/330 (55%), Gaps = 12/330 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F++ P I EAL RG T +Q A L L KD++ A+TG+GKT+AF L +A Sbjct: 3 FKDFPLKDEIKEALYGRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQR 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L A R P AL + PTRELA+QV E+ L VV GG +++ +L Sbjct: 63 LEASRQR---GRKPRALVLTPTRELALQVASEVAALAPHLKVV--PVYGGTGYGKQKEEL 117 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 Q GA +VV TPGR D++R L++S ++ VLDEADEML +GF +++E IL ++P R+ Sbjct: 118 QKGADVVVATPGRALDYLRQGVLDLSEVEIAVLDEADEMLSMGFEEEVEAILAATPPSRQ 177 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILR 240 L+FSAT+ LA+ Y K V +N+ E + Y+ ++A +DR + ++L Sbjct: 178 TLLFSATLPTWARRLAERYMKSPVVINVVKEE----GVTYQEEAILAPTDRLALLSDLLY 233 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 K AIVF T+A L A+ G+LSQ +R ++ R+G RV +A Sbjct: 234 VKAPKRAIVFTKTKAETEEVATGLLRLGHAARAIHGDLSQADRERVMRAFREGEVRVLVA 293 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLH 330 TDVAARG+D+P+++LV+H L PE H Sbjct: 294 TDVAARGLDIPEVDLVVHYRLPDKPETYQH 323 >gi|116671331|ref|YP_832264.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp. FB24] gi|116611440|gb|ABK04164.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24] Length = 585 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 197/360 (54%), Gaps = 14/360 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I E+L++ G + +Q L L D++ A+TG+GKT+ FG+ ++ Sbjct: 43 NVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGIPALQRVVGR 102 Query: 66 ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +D + + AP AL I PTRELAVQV ++LE K +A GG + + L Sbjct: 103 DDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAARKRNARIATIYGGRAYEPQVDSL 162 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 Q G IVVGTPGRL D + K L++ ++K V+LDEADEMLDLGF D+E ++ +P R+ Sbjct: 163 QKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIAGTPAVRQ 222 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAI 235 L+FSAT+ + +A+ Y + A + R + YRA + D+ + Sbjct: 223 TLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSM---DKIEVV 279 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 IL+ G I+F T+ + ++ + L + F A+ G+L Q R AL+ R+ + Sbjct: 280 ARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNKV 339 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 V +ATDVAARGID+ D+ VI+ + + + LHR GRTGRAG KG +V FV +M R Sbjct: 340 DVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDMPR 399 >gi|218233461|ref|YP_002370229.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus B4264] gi|229153612|ref|ZP_04281789.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550] gi|218161418|gb|ACK61410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus B4264] gi|228629841|gb|EEK86493.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550] Length = 481 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAIRERDA 383 S E + + A Sbjct: 372 SKEEVMKEKA 381 >gi|323359563|ref|YP_004225959.1| superfamily II DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323275934|dbj|BAJ76079.1| superfamily II DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 482 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 189/344 (54%), Gaps = 7/344 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q I +AL+ +G V+ +QE + L +D++ A+TG+GKT FG+ + L Sbjct: 9 VDQDIVDALASKGIVDAFPIQEQTIPLGLPGQDIIGQAKTGTGKTFGFGIPVVQRL---- 64 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +P AL + PTRELAVQV +++ L + V GG + + L+ GA Sbjct: 65 -GLNPEPGVKALIVVPTRELAVQVYEDMDMLTSNRPTSVVAIYGGKAYEGQIDQLKAGAQ 123 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVVGTPGRL D + L++S+ VVLDEAD+MLDLGF DIE I P R +FS Sbjct: 124 IVVGTPGRLIDLANQRLLDLSNATEVVLDEADKMLDLGFLADIEKIFSKVPPVRHTQLFS 183 Query: 187 ATISPAITTLAKNYQKDAV--RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 AT+ I LA+ + + + R N E ++I + D+D I IL+ G Sbjct: 184 ATMPGPIVALARRFMSNPIHMRANDPDEGLTQANIKHLVYRAHSLDKDEVIARILQSEGR 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + A++F T+ + + L + F A+ G++SQ+ R ++ + G+ V IATDVA Sbjct: 244 EKAVIFTRTKRAAQKLVDELGDRGFNAAAVHGDMSQEARERSMAAFKAGKKDVLIATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ D+ VI+ + + + LHR+GRTGRAG+ G++V + Sbjct: 304 ARGIDVNDVTHVINHTIPDDEKTYLHRAGRTGRAGKTGIAVTFV 347 >gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 567 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 210/380 (55%), Gaps = 8/380 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE+ + + I L + G T +QE + L +D++ AQTG+GKT AFGL L Sbjct: 1 MTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 LLA+ R + L +APTREL Q+ L+ K+ + + V +GGVS+++++ Sbjct: 61 IEKLLADERRPDNRTT-RTLILAPTRELVNQIAETLKKFIRKSHLRINVVVGGVSINKQQ 119 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ G ++V TPGRL D I + ++++ ++ +VLDEAD+MLDLGF D+ I PK Sbjct: 120 LQLEKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPK 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237 KR+ ++FSAT+ AI LA +Y D V+V + + ++ Y + +D+ + Sbjct: 180 KRQTMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRK 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L + AIVF T+ + K L + V ++ G SQ +R AL+ RDG + Sbjct: 240 SLTENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--R 354 IATDVAARGID+P + V + +L P+ +HR GRT RAGR G+++ F P + R Sbjct: 300 LIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLR 359 Query: 355 RAERLFREANVSVVWEPAPS 374 ERL +++V AP+ Sbjct: 360 DIERLM-GIDIAVASGEAPA 378 >gi|91214661|ref|ZP_01251634.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC 700755] gi|91187088|gb|EAS73458.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC 700755] Length = 586 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 162/541 (29%), Positives = 278/541 (51%), Gaps = 54/541 (9%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56 M FE++ P+++ A+ + G+ + + VQE + L E D++ AQTG+GKT AFG Sbjct: 1 MTTFESLGLSPEIL-RAIEDLGFESPSEVQEQTIPVLLEESTDMVALAQTGTGKTAAFGF 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSV 114 L + + + L ++PTREL +Q+ EL+ Y + VAV GG S+ Sbjct: 60 PLIQNIDLNSKK------TQGLILSPTRELCMQITNELKQYSKYYQNLSTVAVY-GGASI 112 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + R ++ GA I+V TPGR+ D I+ ++IS++ +LDEADEML++GF +DI+ IL Sbjct: 113 TDQARQIKKGAQIIVATPGRMKDMIQRNIIDISNISICILDEADEMLNMGFFEDIKEILS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 S ++ +FSAT+ ++ +AK + K+ + + +N + + +V DR +A Sbjct: 173 HSSDQKNTWLFSATMPKEVSIIAKKFMKNPKEITVGQKNISTKSVSHEYFIVGGRDRYSA 232 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + ++ + A+VFC T+ + + L E + AL G+LSQ +R + R + Sbjct: 233 VKRVVDANPDIYAVVFCRTKRDAQKVAEKLIEDGYSASALHGDLSQAQRDMVMNSFRRKQ 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ++ +ATDVAARGID+ D+ VI+ +L E HRSGRTGRAG++G S+ ++ ++ R Sbjct: 293 IQMLVATDVAARGIDVDDITHVINYQLPDEIEIYTHRSGRTGRAGKEGKSLVIVTKSEVR 352 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERD----AQRILQ-------DPLFLDSIQGDEKKM 403 + +++ R E PS + I +R A I + DP F+ +++ + ++ Sbjct: 353 KIKQVERMIGQKFTQEELPSGDEICKRQLFHLADEIKKTEINHAIDP-FIPNLEAEFEE- 410 Query: 404 VDVLLAKHDPEK--IAAGFLRIHRAGLCAPEEI---TPVSLVSGRDRFRDDSRAFKVGGG 458 L+K D K + F R H AP+ + S SG+D + D++R F + G Sbjct: 411 ----LSKEDIIKKFFSVEFSRFHNYYKNAPKVVQHSADESYSSGKD-YGDETRFF-INIG 464 Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518 +D F W S+ K + E ++R + + V+ +F V+ D V Sbjct: 465 EKDGF---DWMSMKDFLKDQLE-------------LDRDGVAKVDVKNTFSFFNVATDDV 508 Query: 519 D 519 + Sbjct: 509 E 509 >gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] Length = 503 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 155/497 (31%), Positives = 254/497 (51%), Gaps = 34/497 (6%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M +F+++ Q + +A+S+ G+ T +Q + L D++ AQTG+GKT AFG+ L Sbjct: 1 MALFQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + D A L IAPTRELAVQV EL + V V GG + R+ Sbjct: 61 IEKVDVNVD------AIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQI 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L+ HI+VGTPGR+ DHI + L + + V+LDEADEML++GF +DIE IL + P+ Sbjct: 115 RALKKHPHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPE 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + L+FSAT+ I +A+ + + V + ++ +I + V + + + + Sbjct: 175 NHQTLLFSATMPTPIRRIAEKFMNEPKVVKVKAKEVTMPNITQYYLEVQEKRKFDILTRL 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + AI+F T+ V ++ L + + G+L+Q +R + L+ ++G V Sbjct: 235 LDMQSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP------QN 351 +ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG+ G ++ FV P N Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHN 354 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLL 408 ++R +R P+++ E QRI D L QG+ K++ + LL Sbjct: 355 IERTTKRKMERLT-------PPTLDEAME-GQQRIAADKLTESVTQGNLSYYKQLAEELL 406 Query: 409 AKHDPEKIAAGFLRIH-RAGLCAPEEIT--PVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465 +HD + A +++ + +P ++T P + G D ++ GG SR N K Sbjct: 407 EEHDSVSLVAAAIKLFTKEPNESPIQLTAEPPVIAKG-----DKNKRGNGGGRSRSNSKN 461 Query: 466 SSWFSLSVGSKQKAEAR 482 S + SK+ + R Sbjct: 462 YSQQNRRGNSKRFGDKR 478 >gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303] gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303] Length = 636 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 190/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+E+GY + +Q+A + + +D++ AQTG+GKT AF L L L R Sbjct: 96 KTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLQDHGSR---- 151 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELA+QV + + V GG + L+ G +VVGT Sbjct: 152 --PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLKRGVDVVVGT 209 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R L+ S L+ +VLDEADEML +GF DD+E+IL+ PK+R+M++FSAT+ Sbjct: 210 PGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPKERQMVLFSATMPS 269 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+K Y + + I S +++ I R + + S + A+ +L + I+F Sbjct: 270 EIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITLQNSHKLEALRRVLEAFTGEGVIIFA 329 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L V L+G++ Q +R ++ +R G + +ATDVAARG+D+ Sbjct: 330 RTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKGSVNILVATDVAARGLDVD 389 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + LVI+ ++ + E +HR GRTGRAGR G ++ FV P+ Sbjct: 390 RISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPR 429 >gi|170725054|ref|YP_001759080.1| ATP-dependent RNA helicase DbpA [Shewanella woodyi ATCC 51908] gi|169810401|gb|ACA84985.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 469 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/336 (36%), Positives = 193/336 (57%), Gaps = 8/336 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + L GY ++T +Q L L +DV+ +TGSGKT AFGL L L + Sbjct: 21 PELL-DNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLNVKRF 79 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R +L + PTRELA QV +E+ L + V GGV + + L++GAH Sbjct: 80 RIQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAH 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ + L++ + +VLDEAD ML++GF D+++I+ P++R+ L+FS Sbjct: 134 IIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQTLLFS 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I +A+ + V V + S + ++ + L + DR A+ +L H ++ Sbjct: 194 ATFPKQIQKIAEEIMYEPVMVKVTSTHDSNTIDQHFYELESNKDRQKALRLLLLQHRPES 253 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VFC+T+ LA F VVAL G+L Q++R L + A + +ATDVAAR Sbjct: 254 AVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAAR 313 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 G+D+ L++V++ E + + E +HR GRTGRAG KG Sbjct: 314 GLDIEALDMVVNYEFAYDTEVHIHRIGRTGRAGSKG 349 >gi|332669674|ref|YP_004452682.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338712|gb|AEE45295.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484] Length = 590 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 200/363 (55%), Gaps = 16/363 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ +AL++ G + +Q L L D++ A+TG+GKT+ FG+ L + ++ Sbjct: 51 FDVRPEIV-QALADAGISHPFPIQAMTLPVALSRHDIIGQAKTGTGKTLGFGVPLLNAVV 109 Query: 64 AEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 A D P AL + PTRELAVQV +L A+ V V GG + + Sbjct: 110 APGEDGYDALPAPGKPQALVVVPTRELAVQVAGDLATASARRSVRVVQVYGGRAYEPQID 169 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L G +VVGTPGR+ D ++ + L+++ ++ VVLDEADEMLDLGF D+E +L ++P Sbjct: 170 ALNKGVDVVVGTPGRMIDLLKQRHLDLTRVRTVVLDEADEMLDLGFLPDVETLLAATPAS 229 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS-------DIDYRAVLVALSDRD 232 R ++FSAT+ A+ +A+ Y + A + S + YRA + D+ Sbjct: 230 RHTMLFSATMPGAVVAMARRYMTQPTHIRAADPDDDGSQTVKNIKQVVYRAHAL---DKV 286 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 + +L+ +G IVF T+ + ++ L E F AL G+L Q R AL+ R Sbjct: 287 ELLARMLQANGRGLTIVFARTKRTAAKVADELVERGFAAGALHGDLGQGAREQALRAFRH 346 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 G+ V +ATDVAARGID+ D+ V++ + + + LHR+GRTGRAG KG +V FV + Sbjct: 347 GKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFVDWDD 406 Query: 352 MQR 354 M R Sbjct: 407 MPR 409 >gi|304409413|ref|ZP_07391033.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307303771|ref|ZP_07583524.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304351931|gb|EFM16329.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306912669|gb|EFN43092.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 411 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 192/344 (55%), Gaps = 12/344 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--- 71 L+ GY + T +Q + L ++DV+ AQTG+GKT AF L + LLA SP Sbjct: 16 LASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLA----LSPLQE 71 Query: 72 --ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P+ AL + PTRELAVQV + T + V + GGVS+ + G ++ Sbjct: 72 LTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNAGIDVL 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH+R L++ L +V DEAD MLD+GF D+I+ +L P R+ L+FSAT Sbjct: 132 IATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTLLFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247 + AI +L+K +D + +A N ++I+ + V +DR +V +++R Sbjct: 192 LDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIE-QVVYAVDADRKTELVSHLVRSKNWHQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++F T+ V + + L + A G+LSQ R LQ + G+ +V +ATDVAARG Sbjct: 251 LIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +D+ +L+ VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 311 LDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQE 354 >gi|118480482|ref|YP_897633.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|196045537|ref|ZP_03112768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|225867435|ref|YP_002752813.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|229187683|ref|ZP_04314819.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1] gi|118419707|gb|ABK88126.1| ATP-dependent RNA helicase DbpA [Bacillus thuringiensis str. Al Hakam] gi|196023744|gb|EDX62420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|225790635|gb|ACO30852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|228595751|gb|EEK53435.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1] Length = 481 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 198/365 (54%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R ++ R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMEDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|217974215|ref|YP_002358966.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|217499350|gb|ACK47543.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 412 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 192/344 (55%), Gaps = 12/344 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--- 71 L+ GY + T +Q + L ++DV+ AQTG+GKT AF L + LLA SP Sbjct: 16 LASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLA----LSPLQE 71 Query: 72 --ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P+ AL + PTRELAVQV + T + V + GGVS+ + G ++ Sbjct: 72 LTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNAGIDVL 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH+R L++ L +V DEAD MLD+GF D+I+ +L P R+ L+FSAT Sbjct: 132 IATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTLLFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247 + AI +L+K +D + +A N ++I+ + V +DR +V +++R Sbjct: 192 LDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIE-QVVYAVDADRKTELVSHLVRSKNWHQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++F T+ V + + L + A G+LSQ R LQ + G+ +V +ATDVAARG Sbjct: 251 LIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +D+ +L+ VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 311 LDIVELKYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQE 354 >gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct] Length = 604 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + LA D Sbjct: 42 QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 101 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + E + CI GG + R L+ G Sbjct: 102 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 156 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD++F+L ++ + L+FS Sbjct: 157 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQRLLFS 216 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 217 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 276 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S L ++V A++G++ Q +R + R ++ + +ATDV AR Sbjct: 277 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 336 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 337 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 379 >gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003] gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003] Length = 548 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 185/343 (53%), Gaps = 12/343 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + P L +DVL AQTG+GKT +F L + + L + R A Sbjct: 16 AIADAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMVTMLSSGRAR---AR 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P +L + PTRELA QV + T + A+ IGGVS + + + G +++ TPG Sbjct: 73 MPRSLVLCPTRELAAQVAENFDTYAKYTRLTKALLIGGVSFGEQDKLIDRGVDVLIATPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSAT++P I Sbjct: 133 RLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQLTPFTRQTLFFSATMAPEI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-------IVNILRYHG--A 244 + + R+ +A + I + + + RD + + I++ G Sbjct: 193 ERITNTFLHAPARIEVARQATTSETITQKLIQITPPRRDQSAKAKRELLRAIIKSEGEAC 252 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 NAI+FC+ + V K L H F + G+L Q R+ L RDG ++ IA+DVA Sbjct: 253 TNAIIFCNRKTDVDIVAKSLKTHGFNAAPIHGDLDQSLRTKTLDAFRDGSLQLLIASDVA 312 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 ARG+D+P + V + +L S+ E+ +HR GRTGRAGR G + + Sbjct: 313 ARGLDIPAVSHVFNYDLPSHAEDYVHRIGRTGRAGRLGTAYSI 355 >gi|259907048|ref|YP_002647404.1| ATP-dependent RNA helicase DeaD [Erwinia pyrifoliae Ep1/96] gi|224962670|emb|CAX54125.1| Cold-shock DEAD-box protein A [Erwinia pyrifoliae Ep1/96] gi|283476844|emb|CAY72682.1| Cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163] Length = 638 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 202/371 (54%), Gaps = 10/371 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E+L+ GYV + +Q + L +DVL AQTGSGKT AF L L + P Sbjct: 19 ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 71 Query: 73 -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP L +APTRELAVQV + ++ G+ V GG + R L+ G +VVG Sbjct: 72 VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ L++S+L+ +VLDEADEML +GF +D+E I+ P + +FSAT+ Sbjct: 132 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI + K + KD V I S DI ++ A + +A+ L AI+F Sbjct: 192 EAIRRITKRFMKDPQEVRIQSSLTTRPDIS-QSYWTAYGRKTDALTRFLEAEDFDAAIIF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 251 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 311 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 370 Query: 371 PAPSVEAIRER 381 P+ E + +R Sbjct: 371 ELPNAELLGQR 381 >gi|119715705|ref|YP_922670.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp. JS614] gi|119536366|gb|ABL80983.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614] Length = 479 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/344 (38%), Positives = 191/344 (55%), Gaps = 7/344 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL V ++QE L+ L D++ A+TG+GKT+AFG+ + +A D Sbjct: 5 ICDALERVNIVTPFAIQEMTLSVALMGTDLIGQARTGTGKTLAFGIPVLQRSVAPKDPDY 64 Query: 71 ---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P P AL +APTRELA+QV +L A G+ V GGV + LQ G I Sbjct: 65 AELPQGKPQALIVAPTRELALQVSGDLALAGADRGLRVLTVYGGVGYEPQLDALQEGVDI 124 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGRL D + L+ISH+ A+VLDEADEMLDLGF D+E IL +P+ R+ ++FSA Sbjct: 125 VVGTPGRLIDLANRRALDISHVHALVLDEADEMLDLGFLPDVERILAMTPETRQTMLFSA 184 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGA 244 T+ AI LA+ + + + + A + +++ + A + + D+ I +L+ A Sbjct: 185 TMPAAIVALARTHMRHPMNIR-AESSYENATVPATAQFIYQAHDLDKPEIIGRVLQAEDA 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVF T+ R LAE F L G+++Q R AL R+ + RV +ATDVA Sbjct: 244 GKVIVFTRTKRQAQRVADDLAERGFSASPLHGDMAQVAREKALTKFREDKLRVLVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ + + +HR GRTGRAG G+++ + Sbjct: 304 ARGIDVAGVSHVINYSCPEDDKTYVHRIGRTGRAGASGIAITFV 347 >gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 490 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 192/340 (56%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA Y T +QE + L+ +D++ A+TGSGKT AF L + LL D+ P Sbjct: 78 EACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALL---DKPQPL 134 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+G+ E L + + AV +GG+ + + L HI+V TP Sbjct: 135 ---FGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIIVATP 191 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ + KG ++ LK +++DEAD +LD+ F I+ IL P++RR +FSAT+S Sbjct: 192 GRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRTYLFSATLSS 251 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +L + +D VRV+I+S Q S + + + +D +V ++ H K+ IVF Sbjct: 252 KIESLQRASLRDPVRVSISSNKYQTVSTLIQHYMFIPFPQKDTYLVYLVNEHTGKSTIVF 311 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 312 TRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGTRDILVATDVAARGLDI 371 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ ++ + + +HR GRT RAG+ G+++ ++ Q Sbjct: 372 PKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQ 411 >gi|313500928|gb|ADR62294.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida BIRD-1] Length = 461 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 204/365 (55%), Gaps = 12/365 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY ++T +Q L L+ +D++ A+TGSGKT AFG+ L + + N R+ A Sbjct: 21 LEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +EL L A+ + + GGVS+ + L++GAHI+VGTPG Sbjct: 78 ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+ L + L +VLDEAD MLD+GF D I I+ +P +R+ L+FSAT I Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA ++ ++ +V + S H+D I+ R + + R A+ +L ++ ++ + FC Sbjct: 195 KQLAADFMRNPQQVKVES---LHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFC 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L AL G+L Q++R L M + + V +ATDVAARG+D+ Sbjct: 252 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ RA+ + + W+ Sbjct: 312 GLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQKSPLRWDQ 371 Query: 372 APSVE 376 S++ Sbjct: 372 LDSLK 376 >gi|325963995|ref|YP_004241901.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans Sphe3] gi|323470082|gb|ADX73767.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans Sphe3] Length = 564 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 198/360 (55%), Gaps = 14/360 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I E+L++ G + +Q L L D++ A+TG+GKT+ FG+ ++ Sbjct: 43 NVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQRVVGR 102 Query: 66 ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +D + + AP AL I PTRELAVQV +L+ K +A GG + + L Sbjct: 103 DDAGYEKLAVPGAPQALVIVPTRELAVQVANDLQTASRKRNARIATIYGGRAYEPQVEAL 162 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 +NG +VVGTPGRL D + K L++ ++K V+LDEADEMLDLGF D+E ++ ++P R+ Sbjct: 163 KNGVEVVVGTPGRLIDLYKQKHLSLKNVKVVILDEADEMLDLGFLPDVETLIAATPAVRQ 222 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAI 235 L+FSAT+ + +A+ Y + A + R + YRA + D+ + Sbjct: 223 TLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSM---DKIEVV 279 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 IL+ G I+F T+ + ++ + L + F A+ G+L Q R AL+ R+ + Sbjct: 280 ARILQAKGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNKV 339 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 V +ATDVAARGID+ D+ VI+ + + + LHR GRTGRAG KG +V FV +M R Sbjct: 340 DVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDMPR 399 >gi|313683287|ref|YP_004061025.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM 16994] gi|313156147|gb|ADR34825.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM 16994] Length = 526 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/426 (30%), Positives = 224/426 (52%), Gaps = 10/426 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++++ G+ + +Q+ ++ + +DV+ A TG+GKT AFGL ++ Sbjct: 25 IMQSINFAGFKTPSPIQQMVIPVIMEGRDVVGQAHTGTGKTAAFGLPAL-------NKMH 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L I PTRELA QV E+ GV GG S +R+ ++ GA +++ Sbjct: 78 LKGGIETLIITPTRELANQVSDEIFKYGKHLGVRTVTIYGGSSYNRQMDLIERGAQVIIA 137 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L V+LDEADEMLD+GF DDI I P +R+ L+FSAT+ Sbjct: 138 TPGRLLDMLSRNMLKGFTPSTVILDEADEMLDMGFLDDINEIFTYLPTERQTLLFSATMP 197 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ + +I ++DI + ++ S+RD+AI+ ++ AK +VF Sbjct: 198 APIKQLAERILVNPFFASITKSETTNTDITQQYYVIEESERDDAIIRLMDSEDAKKTVVF 257 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V R + VL+ + L G++ Q++R + ++ ++ V IATDVAARG+ + Sbjct: 258 CRTKKEVDRLSNVLSAAGYMAKGLHGDMEQRQRESVIKGLKTDAVDVLIATDVAARGLHI 317 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D+ V + + +PE+ +HR GRTGRAG+KG+++ ++ + +R+ + ++ Sbjct: 318 DDVTHVFNYHIPFDPESYVHRIGRTGRAGKKGVAITLVTPLEFKELQRIRAKVGTTMEHA 377 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI--HRAGL 428 PS ++E R++++ + + + K++D+L +D E+IA + + R + Sbjct: 378 YIPSKLDVKEAQVSRLVRE-IEKQHVYDEAHKVLDLLKQDYDQEQIAYKLISVLMERNTV 436 Query: 429 CAPEEI 434 P I Sbjct: 437 QGPNNI 442 >gi|302879765|ref|YP_003848329.1| DEAD/DEAH box helicase domain-containing protein [Gallionella capsiferriformans ES-2] gi|302582554|gb|ADL56565.1| DEAD/DEAH box helicase domain protein [Gallionella capsiferriformans ES-2] Length = 484 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/350 (35%), Positives = 196/350 (56%), Gaps = 10/350 (2%) Query: 2 KIFENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 + F +P G L + GY+ +T +Q L L D++ A+TGSGKT AF L L Sbjct: 29 RTFNELPLSPGLLSTLQQLGYLTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLL 88 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRER 118 + L RF A A+ + PTRELA QV +E+ L ++ + + GG ++ + Sbjct: 89 TRL--NPRRF----AIQAMVLCPTRELADQVTQEIRRLARSEDNIKILTLCGGSTMRPQI 142 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L++GAHIVVGTPGR+ DH+ L +S L +VLDEAD MLD+GF D + +++ PK Sbjct: 143 ASLEHGAHIVVGTPGRIMDHLDRNTLELSALNTLVLDEADRMLDMGFYDSLAYVVKHCPK 202 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ LMFSAT + LA+ + + +V + E + S I R V+ +R A+ + Sbjct: 203 DRQTLMFSATYPDGVMRLARQFMRQPQQVKL-EEQHEESKIRQRFYEVSNEERLAAVGTL 261 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 LR++ + + FC+T+ +VL + L+G++ Q++R L + V Sbjct: 262 LRHYRPVSTLAFCNTKQQCRSLLEVLHAQGIVALTLNGDMEQRDRDQVLIQFANRSCSVL 321 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARG+D+ LE VI+ +++ +PE +HR GRTGRAG G ++ ++ Sbjct: 322 VATDVAARGLDITQLEAVINVDVTPDPEVHVHRIGRTGRAGEDGWALSLV 371 >gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus marisnigri JR1] gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri JR1] Length = 527 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 148/514 (28%), Positives = 252/514 (49%), Gaps = 42/514 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + G+ T +Q + + L +DV AQTG+GKT AFG+ +R S Sbjct: 19 AIEDMGFEEPTPIQVSTIPAILDGRDVTGQAQTGTGKTAAFGVPAI-------ERVDTGS 71 Query: 74 -APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L ++PTRELA+Q E L G+ + GG + R+ R LQ G IVVGT Sbjct: 72 RETQVLVLSPTRELAIQTAEEFSRLAKHHQGINILPIYGGQPIDRQFRALQRGVQIVVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L+ +K VVLDEAD+MLD+GFR+DIE ILD +P+ R+ ++FSAT+ Sbjct: 132 PGRVLDHLDRGTLSFGAVKVVVLDEADQMLDMGFREDIEKILDDTPRDRQTILFSATLPK 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++K +QK+ +++A + I+ + V DR + +L + ++F Sbjct: 192 PILEISKKFQKNPEFISVARKEVTVPQIEQLYLEVRSRDRLEILTRLLDMYDPDLTLIFS 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V T L + L G++ Q R + R G + +ATDVAARGID+ Sbjct: 252 NTKRGVDDLTTHLQARGYFAEGLHGDMKQTLRDRVMAKFRAGSIDILVATDVAARGIDVE 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 D++LVI+ ++ + E +HR GRT RAGR G +V + + + + + P Sbjct: 312 DVDLVINYDVPQDIEYYIHRIGRTARAGRTGRAVTFVGPKEYFKLRTIQNYTKIKIARIP 371 Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKK---MVDVLLAK-HDPEKIAAGFLRIHRAG 427 P+ + E ++++ D + +G+ + +V+ ++A+ + ++AA L++ G Sbjct: 372 LPTQGDVEESRTRKLI-DRVHQTIDEGNLDQYANLVERIIAEDYTSLEVAAALLKLELGG 430 Query: 428 L--CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485 + P++I P +G + + VG + + + ++ Sbjct: 431 VGQGQPQDIRPA--------------------------QGQALLRIPVGREHQIRPKDIV 464 Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 L +GI +IGAI + + V+V D + Sbjct: 465 GALAGETGIPGSAIGAINIYDTYSTVDVPLDAAE 498 >gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16] gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16] Length = 493 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/380 (33%), Positives = 211/380 (55%), Gaps = 11/380 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ G+ T +Q+ + L KDV+ AQTG+GKT AFG+ L + + + N Sbjct: 15 QAVTNIGFTEATPIQQETIELVLAGKDVIGQAQTGTGKTGAFGIPLVNRIDSSN------ 68 Query: 73 SAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PL L +APTRELA QV + L GV V GG ++ R L+ HI+V Sbjct: 69 --PLVQGLVLAPTRELANQVEQALRQFGRVKGVRTTVVYGGEDFGKQIRSLKQRPHIIVA 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATI 189 TPGRL DH+R K + + ++ VVLDEADEML++GF +DIE IL +P++ R+ L+FSAT+ Sbjct: 127 TPGRLLDHMRRKTIRLESIETVVLDEADEMLNMGFIEDIETILAETPQETRQTLLFSATM 186 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + +LA + K+ R+ + ++ +I + + V ++ + + ++ +IV Sbjct: 187 PKRMESLASKFMKNPTRIAVKAKEVTMENIAQQFIEVHEREKFDVLCRLIDLETPDLSIV 246 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V + L + ++ L G+L+Q +R++ L+ ++G V +ATDVAARG+D Sbjct: 247 FGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDVLVATDVAARGLD 306 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + V + +L +PE+ +HR GRTGRAGR G+++ + + + + + + + Sbjct: 307 ISGVTHVFNFDLPQDPESYVHRIGRTGRAGRSGIAITLATKPEREHVKLIESVSKRRMTQ 366 Query: 370 EPAPSVEAIRERDAQRILQD 389 P P+ E E Q L + Sbjct: 367 RPKPTYEEALEGQKQSTLNE 386 >gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis SCHU S4] gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis FSC198] gi|224457676|ref|ZP_03666149.1| cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis MA00-2987] gi|254371138|ref|ZP_04987140.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp. tularensis MA00-2987] gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis SCHU S4] gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis FSC198] gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp. tularensis FSC033] gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp. tularensis MA00-2987] gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp. tularensis NE061598] Length = 569 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + LA D Sbjct: 16 QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + E + CI GG + R L+ G Sbjct: 76 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD++F+L ++ + L+FS Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S L ++V A++G++ Q +R + R ++ + +ATDV AR Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353 >gi|317479221|ref|ZP_07938356.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] gi|316904509|gb|EFV26328.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36] Length = 425 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/344 (36%), Positives = 188/344 (54%), Gaps = 6/344 (1%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ + I +AL + GY T +QE + L+ KD+L AQTG+GKT AF + + Sbjct: 3 FENLNLIEPILKALQKEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L ++R S AL + PTRELA+Q+G TG+ AV GGV + +L Sbjct: 63 LYKTDNRKSIK----ALILTPTRELAIQIGECFSAYGKYTGLRHAVIFGGVGQKPQTDEL 118 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I+V TPGRL D + +N+ L+ VLDEAD MLD+GF DI IL P KR+ Sbjct: 119 KRGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQ 178 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ P I TLA + +V + + I V ++ + ++++L+ Sbjct: 179 TLFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKN 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ ++F T+ + + L++ + A+ G SQ R AL ++ RV IAT Sbjct: 239 PAIESVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLIAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+AARGID+ L VI+ EL + PE +HR GRTGRAG G+++ Sbjct: 299 DIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIAL 342 >gi|94314203|ref|YP_587412.1| 23S rRNA ATP-dependent RNA helicase [Cupriavidus metallidurans CH34] gi|93358055|gb|ABF12143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Cupriavidus metallidurans CH34] Length = 467 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 141/406 (34%), Positives = 209/406 (51%), Gaps = 19/406 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F +P + L + GY +T +Q A L L D++ A+TGSGKT AF L+L Sbjct: 9 FATLPLSAAMQATLVQLGYDAMTPIQAASLPLALAGHDLIAQARTGSGKTAAFALSLLH- 67 Query: 62 LLAENDRFSPASAPL---ALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRE 117 R P PL AL + PTRELA QV +E+ L A+ V V GG + + Sbjct: 68 ------RLDPR--PLDVQALVLCPTRELADQVTQEIRRLARAEDNVKVLTLSGGTPIRPQ 119 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 L +GAH+VVGTPGR+ DH+ LNI + +VLDEAD MLD+GF DDI FI +P Sbjct: 120 VESLVHGAHVVVGTPGRIIDHLDRGSLNIDAINTLVLDEADRMLDMGFHDDIAFIASHAP 179 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 K R+ L+FSAT AI LA + + V + E + I R V DR NA+ Sbjct: 180 KDRQTLLFSATYPAAIDKLAHRFLRQPKTVKV-EEAHDAATITQRFYEVEEGDRLNAVGR 238 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L + + FC+T+A +L + + L G+L Q++R L + V Sbjct: 239 LLDHFRPATTLAFCNTKARCRDLADLLRAQGYAALELHGDLDQRDRDQVLVQFANRSCSV 298 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARG+D+ LE VI+ +++ +PE +HR GRTGRAG G + ++ + R Sbjct: 299 LVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRVGRTGRAGEAGSAFSLVSLDEMGRVG 358 Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403 + + W +++ ++ R+L + L + G ++K+ Sbjct: 359 NIEQHQGGEFEWH---ALDELKPSGGGRLLPPMVTLQMLGGRKEKI 401 >gi|91784149|ref|YP_559355.1| putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400] gi|91688103|gb|ABE31303.1| Putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400] Length = 537 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 145/396 (36%), Positives = 211/396 (53%), Gaps = 41/396 (10%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-------LASTLL--- 63 AL+ GY N T VQ+ + + +D++VS+ TGSGKT AF L L T Sbjct: 62 ALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIERFSQLQKTQAGQP 121 Query: 64 --------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108 A R P + P L + PTRELA+QV G+ L+ L + Sbjct: 122 REPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 175 Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 +GGV+ ++ L I+V TPGRL DH+ +++S L+ +VLDEAD MLD+GF +D Sbjct: 176 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIED 235 Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 IE I+ ++P R+ ++FSAT+ IT+L KD R+ I Q ++I V Sbjct: 236 IETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVDD 295 Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 D +D + ++LR G AIVF +T+ + LA+ F+ AL G+L Q R+ + Sbjct: 296 RDHKDRLLDHLLRDSGLDQAIVFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTI 355 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 + +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR G++V + Sbjct: 356 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 415 Query: 348 I---PQNMQRRAERLFRE---ANVSVVWEP---APS 374 + Q +R ER R NV +EP APS Sbjct: 416 VHHAEQGALKRIERFVRTPLAVNVVEGFEPRKSAPS 451 >gi|167896715|ref|ZP_02484117.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 7894] Length = 435 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 193/356 (54%), Gaps = 8/356 (2%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T +Q A L L D++ A+TGSGKT AF LAL + L A RF AL + P Sbjct: 1 MTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ----ALVLCP 54 Query: 83 TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 TRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPGR+ DH+ Sbjct: 55 TRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPGRIMDHLDR 114 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201 L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I L++ + Sbjct: 115 GHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFL 174 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 + RV + E S I R V +R +A+ +L ++ + I FC+T+ Sbjct: 175 RHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLL 233 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 VL F V+AL GEL Q+ER L + V +ATDVAARG+D+ LE VI+ ++ Sbjct: 234 DVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293 Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 + +PE +HR GRTGRA + G ++ + N R + + V W P ++A Sbjct: 294 TPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLAELKA 349 >gi|85705347|ref|ZP_01036446.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217] gi|85670220|gb|EAQ25082.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217] Length = 438 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 200/355 (56%), Gaps = 4/355 (1%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M +F+ +P + L+ G T +Q + L DVL AQTG+GKT+AFGL L Sbjct: 1 MNLFDEMGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + L+ E + +P + +L +APTRELA Q+ L L + + + + +GG S++ + Sbjct: 61 ITRLMEEPGKPAPKTI-RSLILAPTRELAGQIRDSLLPLVKDSPIKIGLVVGGASINPQI 119 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ G I+V TPGRL D I + + + + +VLDE D+MLDLGF + I Sbjct: 120 KRLEQGIDILVATPGRLLDLIDRRAVRLDAARFLVLDEGDQMLDLGFIHALRRIAGLLAA 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ +MFSAT+ + LA +Y ++ RV ++ + + +A + + + ++ + Sbjct: 180 ERQTMMFSATMPKQMEELAGSYLRNPKRVQVSPPGKAADKVTQEVHFIAKASKPDLLIEL 239 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L H ++ A+VF T+ + K L + F V + G SQ +R AL+ RDG+ ++ Sbjct: 240 LGKHKSELALVFGRTKHGSDKLAKRLEQAGFAVATIHGNKSQGQRERALKAFRDGQVKIL 299 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++ F P M Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 354 >gi|163855229|ref|YP_001629527.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804] gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii] Length = 476 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 193/340 (56%), Gaps = 3/340 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66 PQ++ +++++ GY T +Q L + +DV+ +AQTG+GKT AF L + L+ N Sbjct: 26 PQLL-QSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPILHRLMPLAN 84 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 SPA P+ L + PTRELA QV ++ T + AV GGV + ++ L+ G Sbjct: 85 TSASPARHPVRTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGPQKEALRRGC 144 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+ K +N+S + +VLDEAD MLD+GF D++ I+ P +R+ L+F Sbjct: 145 EILVATPGRLLDHVEQKTVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPAQRQGLLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I L + Y V + +A+ N + A + + A+V++++ G K Sbjct: 205 SATFSNEIRKLGRTYLNQPVEIEVAARNATADTVSQIAYQMPSDAKRAAVVHLVKSRGLK 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF +T+ +R + L + ++ G+ SQ +R AL + G V +ATDVAA Sbjct: 265 QVIVFSNTKIGTARLARELERDGVRAESIHGDKSQADRMKALDAFKAGELEVLVATDVAA 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+ + VI+ +L N E+ +HR GRTGRAG G ++ Sbjct: 325 RGLDVAGVPCVINYDLPHNAEDYVHRIGRTGRAGASGEAI 364 >gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC 15579] gi|187774670|gb|EDU38472.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC 15579] Length = 425 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 190/345 (55%), Gaps = 2/345 (0%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I +AL E GY T +QE + L KD++ AQTG+GKT AF + + Sbjct: 2 LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L + AL +APTRELA+Q+G E + AV GGVS + + + Sbjct: 62 NLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G I++ TPGR+ D K +++ +++ VLDEAD MLD+G D++ I+ PK R Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKVR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ IT L + KD +RV + + I V + + + ++L+ Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLLK 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++A+VF +T+ + K L E + A+ G SQ R AL ++G+ RV +A Sbjct: 242 DESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TD+AARGID+ +L V + L PE +HR GRTGRAG KG+++ Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346 >gi|212550405|ref|YP_002308722.1| ATP-dependent RNA helicase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548643|dbj|BAG83311.1| putative ATP-dependent RNA helicase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 548 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 162/540 (30%), Positives = 277/540 (51%), Gaps = 47/540 (8%) Query: 1 MKIFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFG 55 MK FE IP ++ +A++E GY N +QE ++ P L K +V+ A+TG+GKT AFG Sbjct: 1 MKTFEELGIIPDIL-KAITEIGYENPMPIQEKVI-PYLLGKGNEVIALAETGTGKTAAFG 58 Query: 56 LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVS 113 L + + ++ P A+ + PTREL +Q+ ++ Y K ++ + GG + Sbjct: 59 LPILQQIQIHHEH------PQAVVLCPTRELCLQIANDINNYSKYLKKLKILPIY-GGSN 111 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + + + L+ G HIVV T GRL D I+ +++ +++ VVLDEADEML +GF + I+ IL Sbjct: 112 IESQIKALRGGVHIVVATSGRLIDLIKRGAVDLQYVRNVVLDEADEMLSVGFSESIDEIL 171 Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 P+ R ML+FSAT+ I+ + K Y ++ + I +N + + +V++SDR Sbjct: 172 RHIPEDRNMLLFSATMPLEISWITKKYMRNPHEIVIGKKNSGGRTVRHVYYMVSVSDRYF 231 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + ++ YH IVFC T+ L + V AL G+LSQ +R +Q R Sbjct: 232 LLKRLVDYHPNIYGIVFCRTKNETQEIANFLIRDGYNVDALHGDLSQSQRDYIMQKFRLH 291 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 ++ +ATDVA+RG+D+ L +I+ L S+ E+ +HRSGRTGRAG+ G S+ +I + Sbjct: 292 NIQLLVATDVASRGLDVDGLSHIINYGLPSDIESYIHRSGRTGRAGKTGTSIAIIHLKEK 351 Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVL--- 407 + + R N + PS + I ++ R+ F+D ++G +E ++ D+ Sbjct: 352 FKIRAIERCINKTFEKGIIPSGKEICKK---RLFH---FIDKLEGVEVNEGEIKDIFPSI 405 Query: 408 ------LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGG 457 L+K D K I+ F R+ + +++ + + +D R+ R A + Sbjct: 406 YYKLDWLSKEDIVKRIISNEFNRL----IDYYQDVNEIKIPKEKD-IRNKRRLEAKTICT 460 Query: 458 GSRDN----FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 +DN +G W +++G L+ +L + + ++G I + TF EV Sbjct: 461 FKKDNRNLPSEGYMWLFINLGRVDGLIPSKLIGLLNDNISGRKVNVGKIDLMRKFTFFEV 520 >gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235] gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235] Length = 603 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 140/428 (32%), Positives = 227/428 (53%), Gaps = 12/428 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ Q + +AL E GY + +Q + L +D++ AQTG+GKT AF L L S L Sbjct: 18 SLSQPVQDALVEIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAFALPLLSMLDPN 77 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124 D P A+ +APTRELA+QV + K + V GG R+ R L Sbjct: 78 ED------GPKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTDFTRQFRALDRK 131 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVVGTPGR+ DHIR L++S + VVLDEADEML +GF +D+E+IL+ +P +R+ + Sbjct: 132 PAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWILEHTPSERQTAL 191 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHG 243 FSAT+ P I +AK K+ V V I + S + R + + + + N+L Sbjct: 192 FSATMPPRIAAIAKKQLKEPVTVAIKNTTATVSTVRQRFIKCNGMRHKIEVLGNLLETEE 251 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AIVF T+++ S + LA V A+ G+++Q +R A+ ++++G+ + +ATDV Sbjct: 252 RDAAIVFTRTKSAASMIAEELAASGHAVEAIHGDITQNKREKAVSLLKEGKIDILVATDV 311 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ + V + ++ + E +HR GR GRAGR G ++ ++ + R+ + Sbjct: 312 AARGLDVDRISHVFNFDIPDDAEPYIHRIGRAGRAGRSGEAILLLTRRDFRKLRDIEDAT 371 Query: 364 NVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL-AKHDPEKIAAG 419 + P PS + IR+ ++ + + + I + + D L + D E +AA Sbjct: 372 RQQMQPMPPPSRALIAEIRQAKLEKKIGEIITEGRINRERTAVTDALANLETDAETLAAA 431 Query: 420 FLRIHRAG 427 L++ + G Sbjct: 432 LLKMLQTG 439 >gi|259908378|ref|YP_002648734.1| ATP-dependent RNA helicase DbpA [Erwinia pyrifoliae Ep1/96] gi|224964000|emb|CAX55505.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96] gi|283478319|emb|CAY74235.1| ATP-dependent RNA helicase dbpA [Erwinia pyrifoliae DSM 12163] Length = 459 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 140/390 (35%), Positives = 211/390 (54%), Gaps = 21/390 (5%) Query: 1 MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 M F + Q+ + L+E GY+ +T VQ L L +DV A+TGSGKT AFGL Sbjct: 1 MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 + + A AL + PTRELA QV +EL L + ++ +C GG V Sbjct: 61 VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLC-GGQPVG 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 +R L + HIVVGTPGR+ DH++ + L + + +VLDEAD ML++GFR+DI+ I+ Sbjct: 114 AQRDSLLHAPHIVVGTPGRILDHLKRETLKLDAISTLVLDEADRMLEMGFREDIDTIISH 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRD 232 SP+ R+ L+FSAT AI ++++ Q+D + + E SD I+ ++ Sbjct: 174 SPQARQTLLFSATWPQAIAQISQSIQRDPLTI----ETGDVSDLPAIEQTFYEAGAREKL 229 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 A++ +L + +VFC+T+ L + L G+L Q+ER L + Sbjct: 230 TALIGLLSERQPSSCVVFCNTKRECDEIAYALDKAQISAQPLHGDLEQRERDRMLIRFAN 289 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 G RV +ATDVAARG+D+ L +V++ +LS +PE +HR GRT RAG++G +V FV P Sbjct: 290 GSCRVLVATDVAARGLDIKALAMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDE 349 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRER 381 M RA L +VW +++A+ R Sbjct: 350 MI-RAHALEDYLQQKLVWCNLSALKAVAAR 378 >gi|168462889|ref|ZP_02696820.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634348|gb|EDX52700.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 457 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 206/367 (56%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APSVEAI 378 AP+ +++ Sbjct: 369 APARQSL 375 >gi|204927708|ref|ZP_03218909.1| ATP-dependent rna helicase, dead/deah box family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323050|gb|EDZ08246.1| ATP-dependent rna helicase, dead/deah box family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 457 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIHFAPATRQTLLFSATWPDA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|62180220|ref|YP_216637.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583853|ref|YP_002637651.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911959|ref|ZP_04655796.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|62127853|gb|AAX65556.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468380|gb|ACN46210.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714692|gb|EFZ06263.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 457 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 206/367 (56%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APSVEAI 378 AP+ +++ Sbjct: 369 APARQSL 375 >gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] Length = 501 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 184/335 (54%), Gaps = 10/335 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+S GY T +Q + L +DVL AQTG+GKT AF L + + L R A Sbjct: 14 QAVSAAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGRAR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV E + VA+ IGGVS + L G +++ TP Sbjct: 71 RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT+ P Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNA 247 I LA + + RV +A + + I+ R LVA + ILR+ +N Sbjct: 191 IERLADMFLHNPQRVEVARPSSTATTIEQR--LVATGAEGHEKRKILRHLIRSADELQNG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+ + V+ K LA H F V AL G++ Q+ R+ AL R G + +A+DVAARG Sbjct: 249 IIFCNRKRDVALLQKSLASHGFNVAALHGDMDQRARTAALDGFRSGEVPLLVASDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 +D+P + V + ++ +PE+ +HR GRTGRAGR G Sbjct: 309 LDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRAG 343 >gi|110004511|emb|CAK98848.1| putative atp-dependent rna helicase protein [Spiroplasma citri] Length = 443 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 109/344 (31%), Positives = 200/344 (58%), Gaps = 8/344 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +++ GY NLT +QE + L +D++ + TG+GKTVAF + + L Sbjct: 7 NLYPALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPILQNLNTH 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 P A+ + PT ELA Q+ ++ ++ GV + GG + R+ L+ Sbjct: 67 ------LKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALR-K 119 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 ++I+VGTPGR+ DHI K L + +K +VLDEADEML +GF+ D++ + ++P K + L+ Sbjct: 120 SNIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLL 179 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ + +A NYQ + V + + + ++I V +++ ++ + ++ Sbjct: 180 FSATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAISYHKEDVLIALYKHLQP 239 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K +I+F +T+ ++ ++L + ++G+ S+ ER A+++ RDG+ RV +ATDVA Sbjct: 240 KRSIIFSNTKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRDGKVRVMVATDVA 299 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ +++ VI+ ++ + E+ +HR GRT RAG G+++ ++ Sbjct: 300 ARGIDIDNIDYVINYDIPTERESYIHRIGRTARAGATGVAISIV 343 >gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008] gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM 2008] Length = 515 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 191/341 (56%), Gaps = 7/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ G+ T +Q+ + + KD++ AQTG+GKT AFGL + + N+R Sbjct: 17 ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDG-NERHVQV- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + ++PTRELA+QV EL + T + GG ++R+ R L+ I+V TPG Sbjct: 75 ----VILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQIIVATPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ ++ H+K VVLDEADEML++GF DDI IL + P+ + L+FSAT+ AI Sbjct: 131 RLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ Y + + + I+ + V + + + + + AI+F T Sbjct: 191 QQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELAIIFTRT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T+ L + + + G+LSQQ+R + ++ R+G + +ATDVAARG+D+ + Sbjct: 251 KRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 V + ++ +PE+ HR GRTGRAG+ G + FVIP+ M+ Sbjct: 311 SHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREME 351 >gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] Length = 525 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L+ KDV+ +AQTG+GKT F L + LL++ +R Sbjct: 23 ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNRAQ 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV +E + AV GGV ++ + L++G ++V Sbjct: 82 -AGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 140 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + S L+ +VLDEAD MLD+GF DI IL PK+R+ LMFSAT S Sbjct: 141 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 200 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V S + ++ +++ + + +VF Sbjct: 201 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 260 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + + A+ G SQ R+ AL ++G+ARV +ATD+AARG+D+ Sbjct: 261 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 320 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 321 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 358 >gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] Length = 525 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L+ KDV+ +AQTG+GKT F L + LL++ +R Sbjct: 23 ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNRAQ 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV +E + AV GGV ++ + L++G ++V Sbjct: 82 -AGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 140 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + S L+ +VLDEAD MLD+GF DI IL PK+R+ LMFSAT S Sbjct: 141 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 200 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V S + ++ +++ + + +VF Sbjct: 201 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 260 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + + A+ G SQ R+ AL ++G+ARV +ATD+AARG+D+ Sbjct: 261 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 320 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 321 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 358 >gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 542 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 161/515 (31%), Positives = 265/515 (51%), Gaps = 33/515 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q A + + DV+ AQTG+GKT AF + + S + D S A+ Sbjct: 3 AIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSNI----DVASTAT 58 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELA+QV A + + I GG S + L+ GAH+VVGTP Sbjct: 59 Q--ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAHVVVGTP 116 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ LN+SH+ +VLDEADEML +GF ++++ IL +P+ +++ +FSAT+ PA Sbjct: 117 GRVIDHLERGTLNLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPA 176 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L Y D + V+ ++ +I R + VA + +A+ +L + IVF Sbjct: 177 IRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVR 236 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L F A++G++ Q +R + ++DG + +ATDVAARG+D+ Sbjct: 237 TKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGLDVER 296 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P+ +R + +A + E Sbjct: 297 ISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPR--ERHLLKAIEKATRQPLTEA 354 Query: 372 A-PSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPE--KIAAGF 420 P+VE + +AQR+ + F DSI +K+V +HD IAA Sbjct: 355 ELPTVEDV---NAQRVAK---FADSITAALGAPGIDLFRKLVQDYEREHDVPMADIAAAL 408 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 R G EE ++ R+R + + R + + + ++VG + K Sbjct: 409 AVQSRDG----EEFL-MAPEPPRERRERHTERRERTEKPRST-RPLATYRIAVGKRHKIG 462 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 ++ + G++R G I + PD + VE+ A Sbjct: 463 PGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPA 497 >gi|146163668|ref|XP_001012102.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila] gi|146145909|gb|EAR91857.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila SB210] Length = 533 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 116/339 (34%), Positives = 189/339 (55%), Gaps = 7/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA + YV T++Q L L+++D++ A+TGSGKT+AF L + LL F Sbjct: 109 EACNRLKYVKPTAIQRESLVYTLKQRDIIALAETGSGKTLAFALPVIQNLLDAPQPF--- 165 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL ++PTREL +Q+ E L + V +GG+ + L HI++GTP Sbjct: 166 ---YALVLSPTRELCMQIAEHFEALGVGISLKTTVIVGGLDPMAQAIALSKKPHIIIGTP 222 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GR+ H++ KG N LK +VLDEAD++L++ F DI ILD PKKR +FSAT++ Sbjct: 223 GRILYHMQNTKGFNFKALKFLVLDEADKLLNMDFEKDINQILDIIPKKRNTFLFSATMTN 282 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + KD V++ ++S+ + S + + + +D +V L +I+F Sbjct: 283 KVHKLQRASLKDPVKIEVSSKYQMVSTLVAQYAFIPAKYKDCYLVYSLNEFAGNTSIIFV 342 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T + + T +L F V + G++SQ +R A+ + G ++ +ATDVA+RG+D+P Sbjct: 343 QTCLNAIKLTLMLRNLGFSAVTIHGQMSQVKRLGAINKFKSGEKKILVATDVASRGLDIP 402 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ++LVI+ ++ +N + +HR GRT RAGR G ++ + Q Sbjct: 403 SVDLVINYDIPTNAKEYVHRVGRTARAGRAGKAISFVTQ 441 >gi|50954624|ref|YP_061912.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951106|gb|AAT88807.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 491 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 197/354 (55%), Gaps = 8/354 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI Q + +AL+ +G +Q + L +D++ A+TG+GKT FGL + L A+ Sbjct: 7 NIDQDMVDALAAKGITEPFPIQTQTIPLALTGQDIIGQAKTGTGKTFGFGLPIIQRLGAD 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AL + PTRELAVQV +LE + +A GG + + L+ GA Sbjct: 67 -----PEPGVQALVVVPTRELAVQVYEDLEQAASNRPTSIAAIYGGKAYEGQIAQLKAGA 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D + LN+S ++ +VLDEAD+MLDLGF DIE + +P R ++F Sbjct: 122 QVVVGTPGRLLDLAGQRLLNLSTVREMVLDEADKMLDLGFLSDIEKLFAQTPATRHTMLF 181 Query: 186 SATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 SAT+ I LA+ + +R E + ++I + D+D + IL+ G Sbjct: 182 SATMPGPIVALARRFMTRPIHIRATDPDEGQIQANIKHLVYRAHSLDKDEVVARILQSEG 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F T+ S ++ + L + F A+ G+L+Q++R A+ + G+ V IATDV Sbjct: 242 RGKTVIFTRTKRSAAKLMEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDVLIATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356 AARGID+ D+ VI+ + + + LHR+GRTGRAG+ G++V FV +++ + A Sbjct: 302 AARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAGKSGIAVTFVDWEDLHKWA 355 >gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359] gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359] Length = 522 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 207/369 (56%), Gaps = 15/369 (4%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 ++ F+N I VI AL++ G+ T +QE + L D++ AQTG+GKT A+G+ + Sbjct: 6 LEKFKNLQISDVIINALNDMGFEEPTPIQEGSIPVALEGHDMIGQAQTGTGKTAAYGIPV 65 Query: 59 ASTLLAENDRFSPASAPLALA---IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 +LA A AP L ++PTRELA+QV E+ L T V GG + Sbjct: 66 LEKILA-------AGAPKELQSVILSPTRELAIQVAEEINHLAQYTPVQALPIYGGQDME 118 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 R+ R L+ I+V TPGRL DH++ + +S + +VLDEADEML++GF DDI I+ + Sbjct: 119 RQLRRLRKSPQIIVATPGRLIDHMKRGTVKLSSISTIVLDEADEMLNMGFIDDINLIMSA 178 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 +P+ R+ L+FSAT+ I LA+ + KD + + ++ ++ + VA + + + Sbjct: 179 TPETRQTLLFSATMPAPIQKLAETFLKDPQIIRMKAKEVTIDLVEQSYIEVADRQKFDVL 238 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +L AI+F T+ V ++ L + + + G+L+Q +R + ++ R+ Sbjct: 239 CRLLDLQEPDLAIIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREKTI 298 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ- 353 + +ATDVAARG+D+ + V + +L +PE+ +HR GRTGRAG+ G + FVIP+ + Sbjct: 299 DILVATDVAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREIDH 358 Query: 354 -RRAERLFR 361 R E+L + Sbjct: 359 LRTIEKLIK 367 >gi|198243415|ref|YP_002215491.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937931|gb|ACH75264.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623237|gb|EGE29582.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 457 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVSLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae] gi|187026294|emb|CAP34430.1| CBR-INF-1 protein [Caenorhabditis briggsae AF16] Length = 402 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 192/342 (56%), Gaps = 7/342 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P KDV+ AQ+G+GKT F +++ L D P AL Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI----LQRIDHSDPHVQ--AL 101 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V + CIGG SV ++R L+NG H+VVGTPGR+ D Sbjct: 102 VMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLENGIHVVVGTPGRVGDM 161 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I L+ S +K VLDEADEML GF+D I + S P+ ++++ SAT+ + + Sbjct: 162 INRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVVLLSATMPAEVLDVTD 221 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + ++ +R+ + + I + V + + + + ++ A++FC+TR V Sbjct: 222 RFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKV 281 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + T+ + F V L G++ Q ER ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 282 DQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVI 341 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 + +L SN EN +HR GR+GR GRKG+++ + +N R+ + + Sbjct: 342 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEI 383 >gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral taxon 158 str. F0412] gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral taxon 158 str. F0412] Length = 523 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 191/341 (56%), Gaps = 7/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ G+ T +Q+ + + KD++ AQTG+GKT AFGL + + N+R Sbjct: 17 ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDG-NERHVQV- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + ++PTRELA+QV EL + T + GG ++R+ R L+ I+V TPG Sbjct: 75 ----VILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQIIVATPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ ++ H+K VVLDEADEML++GF DDI IL + P+ + L+FSAT+ AI Sbjct: 131 RLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ Y + + + I+ + V + + + + + AI+F T Sbjct: 191 QQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELAIIFTRT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T+ L + + + G+LSQQ+R + ++ R+G + +ATDVAARG+D+ + Sbjct: 251 KRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 V + ++ +PE+ HR GRTGRAG+ G + FVIP+ M+ Sbjct: 311 SHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREME 351 >gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748] gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748] Length = 521 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 191/341 (56%), Gaps = 7/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ G+ T +Q+ + + KD++ AQTG+GKT AFGL + + N+R Sbjct: 17 ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDG-NERHVQV- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + ++PTRELA+QV EL + T + GG ++R+ R L+ I+V TPG Sbjct: 75 ----VILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQIIVATPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ ++ H+K VVLDEADEML++GF DDI IL + P+ + L+FSAT+ AI Sbjct: 131 RLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ Y + + + I+ + V + + + + + AI+F T Sbjct: 191 QQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELAIIFTRT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T+ L + + + G+LSQQ+R + ++ R+G + +ATDVAARG+D+ + Sbjct: 251 KRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 V + ++ +PE+ HR GRTGRAG+ G + FVIP+ M+ Sbjct: 311 SHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREME 351 >gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis subsp. holarctica FSC022] gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis subsp. holarctica FSC022] Length = 569 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + LA D Sbjct: 16 QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + E + CI GG + R L+ G Sbjct: 76 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD++F+L ++ + L+FS Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S L ++V A++G++ Q +R + R ++ + +ATDV AR Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353 >gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 514 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L+ KDV+ +AQTG+GKT F L + LL++ +R Sbjct: 12 ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNRAQ 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV +E + AV GGV ++ + L++G ++V Sbjct: 71 -AGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + S L+ +VLDEAD MLD+GF DI IL PK+R+ LMFSAT S Sbjct: 130 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V S + ++ +++ + + +VF Sbjct: 190 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + + A+ G SQ R+ AL ++G+ARV +ATD+AARG+D+ Sbjct: 250 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 347 >gi|168333928|ref|ZP_02692160.1| ATP-dependent RNA helicase [Epulopiscium sp. 'N.t. morphotype B'] Length = 472 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/459 (30%), Positives = 230/459 (50%), Gaps = 30/459 (6%) Query: 80 IAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELAVQ+ E++ + A K + + GG S+ ++ L+ IVVGTPGR+ DH Sbjct: 2 LCPTRELAVQIATEMKKICAHKKDIGILAVYGGESIEKQLAGLRRRPQIVVGTPGRVMDH 61 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R K L + LK +VLDEADEML++GFR+DI+ IL+S P+ R+ L+FSAT+ AI +A Sbjct: 62 MRRKTLKLGALKMLVLDEADEMLNMGFREDIDTILESIPENRQFLLFSATLPKAIMEIAN 121 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 YQ +AV++N + I + V + + ++ + K +VFC+T+ V Sbjct: 122 KYQTNAVKINTTKKQVTVKTISQHYLDVNEKKKSEVLARLIDSNNFKLMLVFCNTKKRVD 181 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 K L ++ AL G++ Q R + + R G + IATDVAARGID+ D++ V + Sbjct: 182 DLCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVDAVFN 241 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378 +L + E +HR GRTGRA RKG S + + ++ R N + P+++ I Sbjct: 242 YDLPIDDEYYVHRIGRTGRANRKGTSYSFVCGKEIYKLRQIERYTNSKITKITIPTMDDI 301 Query: 379 RERDAQRILQDP-------------LFLDSIQGD---EKKMVDVLLAKHDPEKIAAGFLR 422 + IL + F+ I + E + +D+ ++AA FL Sbjct: 302 KGNKVNSILDEIKEEIKEGKITTNLAFITQIAQELNAECEELDIT-----STEVAAAFLN 356 Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482 + + V D +D + G N KG +++G+K K E+ Sbjct: 357 VAMKKMVTGSN----PRVKLADLEHEDKKTTTYGY----NEKGYKRLFINLGNKDKLESS 408 Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 L+ + ++ ++ + IG I + +F+EV A VD L Sbjct: 409 QLVKFVASNTSVSGKEIGKIDMLDKFSFLEVPAKYVDEL 447 >gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84] gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84] Length = 506 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 6/366 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+++ GY T +Q + L+ +D+ AQTG+GKT +F L + + L Sbjct: 9 LSQKVLSAVTDAGYTTPTPIQAGAIPFALQRRDICGIAQTGTGKTASFVLPMLTLLEKGR 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P L + PTRELA QV E + +A+ IGGVS + R L+ GA Sbjct: 69 AR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQDRKLERGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH L +S ++ V+DEAD MLD+GF DIE I P R+ L FS Sbjct: 126 VLICTPGRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYH-G 243 AT+ I LA + ++ RV +++ + R V D + A+ +++R Sbjct: 186 ATMPAEIQKLADRFLQNPERVEVSAPASTAKTVTQRFVASHGKDYEKRAALRDLIRAQTD 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG+ ++ +A+DV Sbjct: 246 LKNAIIFCNRKVDVADLFRSLQRHGFSVGALHGDMDQRSRTTMLQNFRDGQIQLLVASDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+DLPD+ V + ++ + E+ +HR GRTGRAGR G + ++ + + + + + Sbjct: 306 AARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKHIDAIEKLI 365 Query: 364 NVSVVW 369 V W Sbjct: 366 GEDVQW 371 >gi|78485292|ref|YP_391217.1| ATP-dependent RNA helicase DbpA [Thiomicrospira crunogena XCL-2] gi|78363578|gb|ABB41543.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2] Length = 468 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/390 (34%), Positives = 205/390 (52%), Gaps = 23/390 (5%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 Y LT +Q L P L KDV+ +TGSGKT AFGL + L +N AL Sbjct: 30 YHFLTDIQAQSLPPILEGKDVIAQGKTGSGKTAAFGLGVLQKLDVKNFNVQ------ALV 83 Query: 80 IAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELA QV E+ L + + V GG+ + + LQ GAHIVVGTPGR+ DH Sbjct: 84 LCPTRELADQVANEIRRLARQLQNIKVLTLCGGMPMGPQISSLQQGAHIVVGTPGRIEDH 143 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ L ++ +K +VLDEAD ML++GF+ ++ I+D P++R+ L+FSAT I +++ Sbjct: 144 LKKARLTLAEVKILVLDEADRMLEMGFQPSLDTIIDQLPQQRQTLLFSATFPKQIEHISQ 203 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 VRV +AS + + + + + R A+ +L ++++VFC+T+ V Sbjct: 204 RIMHQPVRVEVASRHDDSTITQHFYQVDSTEQRLQALRLVLLQAKPESSVVFCNTKKEVQ 263 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 L + F +AL G+L Q++R L + + +ATDVAARG+D+ L+ V++ Sbjct: 264 MVADTLRDAGFSALALHGDLEQRDRDQTLIQFANKSISILVATDVAARGLDIEALDAVVN 323 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378 L+ +PE +HR GRTGRAG +G++ I + L + EP P Sbjct: 324 FHLAHDPEVHVHRIGRTGRAGSQGVACSFISDKESYKVATLAEYLGQDIQTEPLP----- 378 Query: 379 RERDAQRILQDPLFLDSIQGDEKKMVDVLL 408 DA + Q PL + KMV +L+ Sbjct: 379 ---DASLLNQPPL--------QAKMVTLLI 397 >gi|229136279|ref|ZP_04265026.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196] gi|228647151|gb|EEL03239.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196] Length = 481 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 120/365 (32%), Positives = 197/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D PKKR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLDCLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPKDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ + ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ + R E + + AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|304411082|ref|ZP_07392698.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307301795|ref|ZP_07581553.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304350617|gb|EFM15019.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306913833|gb|EFN44254.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 515 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L+ KDV+ +AQTG+GKT F L + LL++ +R Sbjct: 12 ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNRAQ 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV +E + AV GGV ++ + L++G ++V Sbjct: 71 -AGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + S L+ +VLDEAD MLD+GF DI IL PK+R+ LMFSAT S Sbjct: 130 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V S + ++ +++ + + +VF Sbjct: 190 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + + A+ G SQ R+ AL ++G+ARV +ATD+AARG+D+ Sbjct: 250 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 347 >gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895181|gb|EFG74896.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 566 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 160/520 (30%), Positives = 267/520 (51%), Gaps = 32/520 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ A+++ GY + T +Q A + + DV+ AQTG+GKT AF + + S + D Sbjct: 22 PSVL-RAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSKI----D 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 S A+ AL +APTRELA+QV A V + I GG S + L+ GA Sbjct: 77 VASKATQ--ALVLAPTRELALQVAEAFSRYGAHLPKVNVLPIYGGSSYTVQLAGLRRGAQ 134 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L++SH+ +VLDEADEML +GF ++++ IL +P+ +++ +FS Sbjct: 135 VVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFS 194 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ PAI L Y D + V+ ++ +I R + VA + +A+ +L + Sbjct: 195 ATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEA 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + + L F A++G++ Q +R + ++DG + +ATDVAAR Sbjct: 255 MIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAAR 314 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREA 363 G+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P +++ R E+ R+ Sbjct: 315 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAIEKATRQ- 373 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHDPEK 415 +++ P+VE + +AQR+ + F DSI G E +K+V+ +HD Sbjct: 374 --TLIEAELPTVEDV---NAQRVAK---FADSITAALGRPGIELFRKLVEDYEREHDVPL 425 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475 ++ E + R DD R F + + ++VG Sbjct: 426 ADIAAALALQS-RDGEEFLMAPEPPRERRERHDDHRERAEKPRQSRPF---TTYRIAVGK 481 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + K ++ + G++R G I + PD + VE+ A Sbjct: 482 RHKVGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPA 521 >gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326] gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326] Length = 646 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/356 (35%), Positives = 204/356 (57%), Gaps = 14/356 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71 AL G+V+ T +Q A + P L E D L AQTG+GKT AF L L + L L + Sbjct: 20 ALEGMGFVSPTPIQAASI-PHLMEGVDALGKAQTGTGKTAAFSLPLLNKLDLGQR----- 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A+ +APTRELA+QV E++ L +G+ V GG S+ + R L++GAHIVVG Sbjct: 74 --KPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALKHGAHIVVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D I L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ Sbjct: 132 TPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P + + + + ++ V +++A +N ++ + +V ++D A+ +L +IVF Sbjct: 192 PMLKNIVERFLREPVTIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR R L F+ AL G++ Q R + ++ G + +ATDV ARG+D+ Sbjct: 252 VRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363 P + V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + Sbjct: 312 PRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367 >gi|200389990|ref|ZP_03216601.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602435|gb|EDZ00981.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 457 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 206/367 (56%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCEAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APSVEAI 378 AP+ +++ Sbjct: 369 APARQSL 375 >gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 526 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L+ KDV+ +AQTG+GKT F L + LL++ +R Sbjct: 23 ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNRAQ 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV +E + AV GGV ++ + L++G ++V Sbjct: 82 -AGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 140 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + S L+ +VLDEAD MLD+GF DI IL PK+R+ LMFSAT S Sbjct: 141 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 200 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V S + ++ +++ + + +VF Sbjct: 201 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 260 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + + A+ G SQ R+ AL ++G+ARV +ATD+AARG+D+ Sbjct: 261 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 320 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 321 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 358 >gi|238854499|ref|ZP_04644837.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3] gi|260664817|ref|ZP_05865668.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii SJ-7A-US] gi|282934107|ref|ZP_06339386.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii 208-1] gi|313472627|ref|ZP_07813116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus jensenii 1153] gi|238832852|gb|EEQ25151.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3] gi|239529420|gb|EEQ68421.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus jensenii 1153] gi|260561300|gb|EEX27273.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii SJ-7A-US] gi|281301854|gb|EFA94119.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii 208-1] Length = 484 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 188/341 (55%), Gaps = 7/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + + + Sbjct: 14 KAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPILQKIDNKEHFIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q EL L V V GG + R+ R L+ I+VGTP Sbjct: 72 ----ALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALKQTPAILVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH++ K + + +K VVLDEADEMLD+GF DIE ILD + + L+FSAT+ Sbjct: 128 GRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAKNREHTLLFSATMPKP 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + K+ V I S+ ID V +++ + + ++ A+VF Sbjct: 188 ILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLIDVQAPDLAVVFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V T+ L + + G+LSQ +R + L+ ++G+ + +ATDVAARG+D+ Sbjct: 248 TKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEI 348 >gi|172058976|ref|YP_001815436.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991497|gb|ACB62419.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum 255-15] Length = 481 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 155/528 (29%), Positives = 251/528 (47%), Gaps = 72/528 (13%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EA+ + GY T VQ+A++ L EKD++V ++TGSGKT +FG+ L + E ++ Sbjct: 15 ILEAIEQLGYHTPTDVQQAVIPVALSEKDIIVKSRTGSGKTASFGIPLCELVEWEENK-- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA+QV ++ + + G + +L+ HIVVG Sbjct: 73 ----PQALILTPTRELALQVTEDVMNIGRYKRIKATAVFGKQPFRGQVAELKQKTHIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ L++ +K +VLDEADEML++GF D ++ IL PK+R ++FSAT Sbjct: 129 TPGRVLDHLERGTLSLEKVKYLVLDEADEMLNMGFLDQVDTILKQLPKQRTTMLFSATFP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L+ Y + +V I ++ + ++I++ + V + + ++ ++F Sbjct: 189 QDIHQLSDRYMQSPKQVEITTKATEIAEIEHSYIKVTDKTKFAVLKDVTVVENPDRCMIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V + LA + V + G + Q ER ++ R G R +ATDVAARGID+ Sbjct: 249 CRTKEHVDFVAQGLASMDYPVEKIHGGMEQDERLAVMKAFRAGEFRYLVATDVAARGIDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ VI ++ E+ +HR+GRTGRAG G ++ ++ ++ RR + + ++ Sbjct: 309 ENITHVIQYDMPVEKESYVHRTGRTGRAGALGKAISLVTESDMRRLREVEQYRGEAIERR 368 Query: 371 PAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 AP+ E IR DA EKI +R Sbjct: 369 QAPTERELIRTADAFE----------------------------EKITTADVR------- 393 Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489 S ++ D GG + + + VG+ K E Sbjct: 394 ----------ASKTEQLNADIMKLYFNGGKKKKLRAVDF----VGTIAKIE--------- 430 Query: 490 RSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLR--RTVKLDKGIQLK 534 G+ Q IG I +Q +T+VE+ + G +LR +T K+ KG QLK Sbjct: 431 ---GMTAQDIGIITIQDTVTYVEILNGKGPLVLRAMKTTKV-KGKQLK 474 >gi|207856830|ref|YP_002243481.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708633|emb|CAR32955.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 457 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp. subtilis str. 168] gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp. subtilis str. SMY] gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5] gi|134039178|sp|P96614|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto BEST195] gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5] Length = 494 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/404 (32%), Positives = 221/404 (54%), Gaps = 27/404 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +A++ G+ T +Q + L KDV+ AQTG+GKT AFG+ L Sbjct: 9 NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV------ 62 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ +P S + A+ IAPTRELA+QV EL + V GG + R+ R L+ Sbjct: 63 -EKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +I+VGTPGRL DHI + + ++++ VV+DEADEML++GF DDIE IL + P + + L+ Sbjct: 122 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A+ + + V + ++ S+I + V + + + +L Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF T+ V + L + + G+L+Q +R AL+ ++G V +ATDVA Sbjct: 242 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARG+D+ + V + ++ +PE+ +HR GRTGRAG+ GM++ F+ P R + + R Sbjct: 302 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR-- 354 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 ++E +R R +++P ++++G ++ V+ L Sbjct: 355 ----------AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVERL 387 >gi|194445037|ref|YP_002040904.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403700|gb|ACF63922.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 457 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVSLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHKPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|157377241|ref|YP_001475841.1| ATP-dependent RNA helicase RhlB [Shewanella sediminis HAW-EB3] gi|189040083|sp|A8G0U0|RHLB_SHESH RecName: Full=ATP-dependent RNA helicase rhlB gi|157319615|gb|ABV38713.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 435 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 199/341 (58%), Gaps = 9/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66 I AL+E G+ T +Q L L++KD+ AQTG+GKT+AF +A L +T + E Sbjct: 20 IKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPEG 79 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + P A+ +APTRELA+Q+ ++ + L TG+ V + GG S +R+ L G Sbjct: 80 RQLN---QPRAIIMAPTRELAIQIAKDADLLAKHTGLKVGIVYGGESYEVQRKVLDKGVD 136 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184 I++GT GR+ D++R +N+S ++AVVLDEAD M DLGF DI F+ P K R ++ Sbjct: 137 ILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNML 196 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + LA ++ + +V IA + +I ++ ++ ++ +L Sbjct: 197 FSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMDEKMRLLLTLLEEDWP 256 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AIVF +T+ S + L +V L+G++ Q++R L++ +G+ V +ATDVA Sbjct: 257 DKAIVFSNTKHSCEKLWSWLEGDGHRVGLLTGDVPQKKRIRILELFTEGKLDVLVATDVA 316 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ + D+ V + +L + E+ +HR GRTGRAG+KG+SV Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSV 357 >gi|332532553|ref|ZP_08408430.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505] gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505] Length = 434 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 188/345 (54%), Gaps = 3/345 (0%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K F P++I +AL E Y LT +Q A + + KDVL SAQTG+GKT AF L + Sbjct: 3 FKSFSFAPEII-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L+ S +AP AL +APTRELA Q+ T + V GGVS + Sbjct: 62 KLV--ESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G IVV TPGRL DHIR L+++ +K +VLDEAD MLD+GF +D++ ++ S ++R Sbjct: 120 LKEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEER 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++L+FSAT AI A K A V + N S +++ V + + ++ Sbjct: 180 QILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIG 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + +VF + + + K L G+ SQ R AL+ ++G+ RV +A Sbjct: 240 KKNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 T+VAARGID+ L VI+ +L E+ +HR GRTGRAGR+G ++ Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAI 344 >gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 515 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 194/338 (57%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L+ KDV+ +AQTG+GKT F L + LL++ +R + Sbjct: 12 ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNR-A 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV +E + AV GGV ++ + L++G ++V Sbjct: 70 QAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + S L+ +VLDEAD MLD+GF DI IL PK+R+ LMFSAT S Sbjct: 130 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V S + ++ +++ + + +VF Sbjct: 190 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + + A+ G SQ R+ AL ++G+ARV +ATD+AARG+D+ Sbjct: 250 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 347 >gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542] gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542] Length = 593 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/351 (36%), Positives = 196/351 (55%), Gaps = 14/351 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66 P+++ +AL++ G V +Q L + D++ A+TG+GKT+ FG+ L ++A Sbjct: 23 PEIV-QALADAGIVAPFPIQAMTLPVAMAGHDIIGQAKTGTGKTLGFGVPLLHRVVAPGE 81 Query: 67 ---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 D P AL I PTRELAVQV ++LE K V + GG + + + L+ Sbjct: 82 PGYDELPAPGKPQALVIVPTRELAVQVAKDLEAASTKRSVRIVQLYGGRAYEPQVKALEQ 141 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGR+ D ++ L+++ + VVLDEADEMLDLGF D+E +L +P R + Sbjct: 142 GVEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLARTPAVRHTM 201 Query: 184 MFSATISPAITTLAKNYQKDA--VRVNIASENRQH----SDIDYRAVLVALSDRDNAIVN 237 +FSAT+ A+ +A+ Y K +R N + Q + YRA + D+ + Sbjct: 202 LFSATMPGAVVAMARRYMKQPTHIRANDPDDGGQTVKNIKQVVYRAHAL---DKVEVLAR 258 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL+ G +IVF T+ + ++ LA+ F A+ G+L Q R AL+ R G+ V Sbjct: 259 ILQSEGRGLSIVFARTKRTAAKVADELADRGFASGAIHGDLGQGAREQALRAFRSGKIDV 318 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARGID+ ++ V++ + + + LHR+GRTGRAG KG +V + Sbjct: 319 LVATDVAARGIDVDEVTHVVNYQCPEDEKTYLHRTGRTGRAGHKGTAVTFV 369 >gi|16764999|ref|NP_460614.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992838|ref|ZP_02573934.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262502|ref|ZP_03162576.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16420182|gb|AAL20573.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240757|gb|EDY23377.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329063|gb|EDZ15827.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246847|emb|CBG24663.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993587|gb|ACY88472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158183|emb|CBW17681.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912646|dbj|BAJ36620.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224281|gb|EFX49344.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129924|gb|ADX17354.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988542|gb|AEF07525.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 457 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Mycobacterium bovis AF2122/97] gi|121637182|ref|YP_977405.1| putative cold-shock dead-box protein a homolog deaD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215430135|ref|ZP_03428054.1| hypothetical protein MtubE_05528 [Mycobacterium tuberculosis EAS054] gi|224989657|ref|YP_002644344.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis BCG str. Tokyo 172] gi|260186187|ref|ZP_05763661.1| hypothetical protein MtubCP_09173 [Mycobacterium tuberculosis CPHL_A] gi|289446844|ref|ZP_06436588.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis CPHL_A] gi|289753325|ref|ZP_06512703.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054] gi|31618035|emb|CAD94146.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent RNA helicase deaD homolog) [Mycobacterium bovis AF2122/97] gi|121492829|emb|CAL71300.1| Probable cold-shock dead-box protein a homolog deaD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772770|dbj|BAH25576.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis BCG str. Tokyo 172] gi|289419802|gb|EFD17003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis CPHL_A] gi|289693912|gb|EFD61341.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054] Length = 563 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 170/539 (31%), Positives = 277/539 (51%), Gaps = 54/539 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ + GY + T++Q A + + DV+ AQTG+GKT AF + + S + + Sbjct: 22 PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79 Query: 68 RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P AL + PTRELA+QV GR +L + + V GG S + L+ Sbjct: 80 -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DH+ L++S + +VLDEADEML +GF DD+E IL +P+ +++ Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ PAI L+ Y D V ++ +I + VA + +A+ +L Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEP 249 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ + + L F A+SG++ Q +R + +RDG + +ATDV Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360 AARG+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ + + E+ Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412 R+ ++ P+VE + + QR+ + F DSI G E +++V+ +HD Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRVAK---FADSITNALGGPGIELFRRLVEEYEREHD 420 Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 IAA R G L AP+ P+S + R R + R + + Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 + ++VG + K ++ + G++R G IR+ PD + VE+ A L R T+K Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526 >gi|323343824|ref|ZP_08084051.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis ATCC 33269] gi|323095643|gb|EFZ38217.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis ATCC 33269] Length = 626 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/353 (35%), Positives = 193/353 (54%), Gaps = 12/353 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK FE + + I A++E G+ VQ+ ++ P L DV+ AQTG+GKT A+G+ Sbjct: 1 MKTFEELGVSEEIRRAITELGFETPMPVQQEVI-PYLLGNGNDVVALAQTGTGKTAAYGI 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 + + + AL ++PTREL +Q+ +L ++ G+ V GG S+ Sbjct: 60 PILQKID------TSKKETQALVLSPTRELCLQIADDLNDFSKYINGLHVVAVYGGTSIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R ++ G I+V TPGRL D + + + VVLDEADEML++GF + I I + Sbjct: 114 AQIRTIKRGVQIIVATPGRLIDLMHRGVAKLDSVANVVLDEADEMLNMGFSESINEIFEG 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P+ R L+FSAT+S I +A+NY DA + + S N +++ +V D+ A+ Sbjct: 174 IPQDRNTLLFSATMSKEIEKIAQNYLHDAKEIVVGSRNEGAESVNHIYYMVNAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 I+ Y+ AI+FC T+ L + AL G+LSQQ+R +Q R Sbjct: 234 KRIVDYYPHIFAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRQHMT 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGRAG+KG S+ +I Sbjct: 294 QFLVATDVAARGLDVEDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISII 346 >gi|311070440|ref|YP_003975363.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942] gi|310870957|gb|ADP34432.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942] Length = 481 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 210/387 (54%), Gaps = 15/387 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL GY++ T VQ+ ++ L +KD++V +QTGSGKT AFG+ + +A+ D Sbjct: 15 IVRALEGLGYMSPTEVQQKVMPQALEKKDLVVKSQTGSGKTAAFGIPICE--MADWDE-- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P AL + PTRELAVQV ++ + + A G +++ +L+ HIVVG Sbjct: 71 --NKPQALILTPTRELAVQVKEDITNIGRFKRMKAAAVFGKSPFDKQKAELKQKTHIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + LK +V+DEADEML++GF + +E I+ P+ R ++FSAT+ Sbjct: 129 TPGRVLDHIEKGTFPLERLKYLVIDEADEMLNMGFIEQVEAIIKHLPRDRMTMLFSATLP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L++ Y K+ + I + I++ + V + + + ++L + I+F Sbjct: 189 EDVEQLSRKYMKNPEHIEIKAAGLTTKHIEHSVIEVREDHKFSLLKDVLVTENPDSCIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ +V + ++ L + + G + Q++R + + + G R ATDVAARGID+ Sbjct: 249 CRTKENVDKLSEELDALDYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLAATDVAARGIDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369 ++ VI+ +L E+ +HR+GRTGRAG +G ++ FV P +R E + + Sbjct: 309 ENITHVINYDLPLEKESYVHRTGRTGRAGNQGKAITFVTPYE-----KRFLAEIEAYIGF 363 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSI 396 E P EA + R + P FL+ + Sbjct: 364 E-IPQAEAPSREEVSR--KKPAFLEKL 387 >gi|256852006|ref|ZP_05557393.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260661425|ref|ZP_05862338.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii 115-3-CHN] gi|282931887|ref|ZP_06337366.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii 208-1] gi|297205122|ref|ZP_06922518.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus jensenii JV-V16] gi|256615418|gb|EEU20608.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260547880|gb|EEX23857.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii 115-3-CHN] gi|281303998|gb|EFA96121.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii 208-1] gi|297149700|gb|EFH29997.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus jensenii JV-V16] Length = 484 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 189/341 (55%), Gaps = 7/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + + + F A Sbjct: 14 KAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPILQKI-NNKEHFIQA 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L I PTRELA+Q EL L V V GG + R+ R L+ I+VGTP Sbjct: 73 -----LVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALKQTPAILVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH++ K + + +K VVLDEADEMLD+GF DIE ILD + + L+FSAT+ Sbjct: 128 GRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAQNREHTLLFSATMPKP 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + K+ V I S+ ID V +++ + + ++ A+VF Sbjct: 188 ILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLIDVQAPDLAVVFGR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V T+ L + + G+LSQ +R + L+ ++G+ + +ATDVAARG+D+ Sbjct: 248 TKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVAARGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEI 348 >gi|188587876|ref|YP_001920681.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str. Alaska E43] gi|188498157|gb|ACD51293.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str. Alaska E43] Length = 480 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 116/333 (34%), Positives = 187/333 (56%), Gaps = 6/333 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY + VQE + LR KD++V +QTGSGKT +FG+ L + + ++ Sbjct: 16 KAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCEKIDWDENK---- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L +APTRELAVQ+ ++ + + G S+ + R L+ HIVVGTP Sbjct: 72 --PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQKTHIVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L++S + V+DEADEML++GF +E I+ PKKR L+FSATI Sbjct: 130 GRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTLLFSATIPDE 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L + + + I S+N ++ + A V + + + + NIL + ++VFC Sbjct: 190 IKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNNILISEMPETSVVFCR 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +V + L + + + G + Q++R + ++ R G R+ +ATD+A+RGID+ Sbjct: 250 TKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVATDIASRGIDIEG 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ ++ E +HR GRTGRAG KG+++ Sbjct: 310 ITHVINYDIPVEKEAYVHRIGRTGRAGAKGVAL 342 >gi|187931511|ref|YP_001891495.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis subsp. mediasiatica FSC147] Length = 569 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + LA D Sbjct: 16 QDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + E + CI GG + R L+ G Sbjct: 76 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD++F+L ++ + L+FS Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S L ++V A++G++ Q +R + R ++ + +ATDV AR Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353 >gi|148550027|ref|YP_001270129.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida F1] gi|148514085|gb|ABQ80945.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1] Length = 494 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 204/365 (55%), Gaps = 12/365 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY ++T +Q L L+ +D++ A+TGSGKT AFG+ L + + N R+ A Sbjct: 54 LEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 110 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +EL L A+ + + GGVS+ + L++GAHI+VGTPG Sbjct: 111 ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 167 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+ L + L +VLDEAD MLD+GF D I I+ +P +R+ L+FSAT I Sbjct: 168 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 227 Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA ++ ++ +V + S H+D I+ R + + R A+ +L ++ ++ + FC Sbjct: 228 KQLAADFMRNPQQVKVES---LHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFC 284 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L AL G+L Q++R L M + + V +ATDVAARG+D+ Sbjct: 285 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 344 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L++VI+ EL+ + E +HR GRTGRAG KG++V ++ RA+ + + W+ Sbjct: 345 GLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQKSPLRWDQ 404 Query: 372 APSVE 376 S++ Sbjct: 405 LDSLK 409 >gi|229085402|ref|ZP_04217643.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44] gi|228697878|gb|EEL50622.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44] Length = 433 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 199/348 (57%), Gaps = 10/348 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 9 ISETFNHTLRENGIAEATPIQEQAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL------- 61 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E+E L K + V GG V ++ R L+ Sbjct: 62 EKIDPESSDVQALIVAPTRELALQITTEIEKMLVHKEDINVLAIYGGQDVAQQMRKLKGN 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DH+R + + +S++ +VLDEAD+ML GF DIE IL+ +P+ ++ ++ Sbjct: 122 THIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTML 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y K+ + I SE ++I R + + +A+ +++ Sbjct: 182 FSATMPKDIKKLAKRYMKEPEMIRIQSEEVTVNNIKQRVIETTDRAKQDALRHVMDRDQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + + L G+LSQ +R ++ R+ + + IATDVA Sbjct: 242 FLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFREAKIQYLIATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ FV P++ Sbjct: 302 ARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKD 349 >gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6] gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6] Length = 506 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/349 (35%), Positives = 191/349 (54%), Gaps = 13/349 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + P L +DVL AQTG+GKT +F L + TLLA Sbjct: 45 PKVL-KAIYEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 102 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 103 --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKGVDV 160 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 161 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 220 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + RV +A + +I+ V+ S +D + ++ Sbjct: 221 TMAPEIERITNTFLSAPERVEVARQATTSENIEQSVVMFKASRKDREGSEKRRVLRTLIE 280 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K N I+FC+ + V K L ++ F + G+L Q +R+ L RDG R+ Sbjct: 281 QEGDKLTNGIIFCNRKTDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFRDGSLRIL 340 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +A+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGR G ++ + Sbjct: 341 VASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITI 389 >gi|157962823|ref|YP_001502857.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847823|gb|ABV88322.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 445 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 203/366 (55%), Gaps = 18/366 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ +A+S RGY LT VQ +L + KD++ AQTG+GKT AF L L +TL+ Sbjct: 6 FDLHPKIL-DAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLLNTLI 64 Query: 64 AENDRFSPASAPLA-------LAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGV 112 E F+ + A L L + PTRELA+QV + ++L KT V GG Sbjct: 65 KEYSLFTDSEAELTHQSSVKVLVLTPTRELAIQVADNITAYAQFLPFKTTAV----YGGS 120 Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172 +++ +R+ LQ G I+V TPGRL DHI GL++S++ +V+DEAD MLDLGF DIE + Sbjct: 121 NMNPQRKALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDIEKV 180 Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 + L FSAT S A+ TLA+ +N+A+ + S I LV + Sbjct: 181 KKLVAPAHQTLFFSATYSDAVKTLAEKMLIAPEWINVAT-SATASLITQEIYLVDTRRKA 239 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 + ++ + + +VF STR S L + GE +Q R+ AL+ + Sbjct: 240 ELLSELIGRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALEEFKS 299 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 G+ RV +ATDVAARG+D+ L LVI+ EL E+ +HR GRTGRAG G ++ FV PQ+ Sbjct: 300 GKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVSPQD 359 Query: 352 MQRRAE 357 + E Sbjct: 360 REMMQE 365 >gi|51245828|ref|YP_065712.1| ATP-dependent RNA helicase DbpA [Desulfotalea psychrophila LSv54] gi|50876865|emb|CAG36705.1| probable ATP-independent RNA helicase (DbpA) [Desulfotalea psychrophila LSv54] Length = 469 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 196/345 (56%), Gaps = 10/345 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY +T +Q L L +D+L A+TGSGKT AFG+ L L R L Sbjct: 21 GYHEMTPIQAESLPHVLEGEDLLAQAKTGSGKTAAFGIGLLHNLDVSLFRVQ------TL 74 Query: 79 AIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV EL + K + + GG+ + + L++ AHIVVGTPGR+ Sbjct: 75 VMCPTRELAEQVAGELRRIARFKHNIKITTLCGGMPIKPQLASLEHQAHIVVGTPGRIEQ 134 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H++ + LN+ H+ +VLDEAD MLD+GF D ++ I+ P++R+ L+FSAT I L+ Sbjct: 135 HLKRESLNLDHVTTLVLDEADRMLDIGFADTLDAIISYLPRRRQTLLFSATFPDEILRLS 194 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRAS 256 + +Q A RV + E+ ++S + D+ AIV+ IL H ++ ++FC+T+A+ Sbjct: 195 EQFQYKAQRVIVDVEHEENS--IQQEFFECKWDKKAAIVSRILATHKPESTLIFCNTKAN 252 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 + L F +A+ G+L Q+ER+ L +G + + +ATDVAARG+D+ L V Sbjct: 253 CRDIAEALEAKGFSALAIHGDLDQRERTEVLVRFSNGSSPIMVATDVAARGLDINGLSAV 312 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 I+ +L E +HR GRTGRAG++G++ ++ + R E + R Sbjct: 313 INVDLPFESEVYIHRIGRTGRAGKEGLAFSLMEPGEEFRLEEINR 357 >gi|160880145|ref|YP_001559113.1| DEAD/DEAH box helicase domain-containing protein [Clostridium phytofermentans ISDg] gi|160428811|gb|ABX42374.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans ISDg] Length = 483 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 191/370 (51%), Gaps = 6/370 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +ALS Y+ T +QE ++ L KD++ ++TGSGKT AF + + +++ E + Sbjct: 15 IIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICESIVWEEN--- 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA QV E+ + V V V GG ++ L+ +HIVVG Sbjct: 72 ---LPQALVLEPTRELAYQVKDEIFNVGRMKRVKVPVVFGGFPFDKQALTLKQKSHIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH L S++K V++DEAD MLD+GF DD++ IL P+ +++FSAT+ Sbjct: 129 TPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIMLFSATMG 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 A+ L + V V + I+ V D+ + +L + NA++F Sbjct: 189 EALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLYKNNPTNAMIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C TR V L + L G + Q++R + + R G R IATDVAARG+D Sbjct: 249 CGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATDVAARGVDF 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D+ VI+ +L + E +HR GRTGR G+ G ++ I + ++ + + + Sbjct: 309 DDITHVINYDLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLIEKFTGTPIEIV 368 Query: 371 PAPSVEAIRE 380 PS E +RE Sbjct: 369 TPPSEEEVRE 378 >gi|281422387|ref|ZP_06253386.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri DSM 18205] gi|281403550|gb|EFB34230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri DSM 18205] Length = 657 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/399 (33%), Positives = 217/399 (54%), Gaps = 12/399 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK FE + + I A+ E G+ N VQE ++ L K DV+ AQTG+GKT ++G+ Sbjct: 1 MKTFEELGVSEEIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTASYGIP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115 + + + D S + A+ ++PTREL +Q+ +L +AK G+ +A GG + Sbjct: 61 V----IQKTDASSKQTQ--AVILSPTRELCLQIADDLNS-FAKYIDGLHIAAVYGGTDIG 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L++G I+V TPGRL D I + ++ VVLDEADEML++GF + I I ++ Sbjct: 114 SQIRTLKHGVQIIVATPGRLLDLINRGVAQLENVNNVVLDEADEMLNMGFSESINAIFEN 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P+ R L+FSAT+S I +A NY D + + S N +++ LV D+ A+ Sbjct: 174 VPEDRNTLLFSATMSKDIEKIALNYLHDHKEIVVGSRNEGAEHVNHIYYLVNAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 ++ ++ AI+FC T+ L + + AL G+LSQQ+R +Q R+ Sbjct: 234 KRVVDFYPRIFAIIFCRTKLETQDIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHTV 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + +ATDVAARG+D+ DL VI+ L + + HRSGRTGRAG+KG S+ +I + + Sbjct: 294 QFLVATDVAARGLDVDDLTHVINYGLPDDVASYTHRSGRTGRAGKKGTSISIIHTREKFK 353 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394 ++ ++ V P+ E I ++ + + D + D Sbjct: 354 VRQIEKQIGKEFVDGVLPTPEEICKKQLFKTMDDIMKTD 392 >gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5] Length = 398 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 190/347 (54%), Gaps = 10/347 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+++ GY T +Q + L +D+ AQTG+GKT +F L + S L Sbjct: 9 LSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGR 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P L + PTRELA QV E + VA+ IGGVS + R L+ GA Sbjct: 69 AR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH L +S ++ +V+DEAD MLD+GF DIE I P R+ L FS Sbjct: 126 VLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----Y 241 AT+ P I LA + ++ R+ +A + R VA +D +LR Sbjct: 186 ATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQR--FVASHSKDYEKRAVLRELVRAQ 243 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG ++ +A+ Sbjct: 244 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQLLVAS 303 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 350 >gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P] gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P] Length = 432 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/367 (34%), Positives = 193/367 (52%), Gaps = 10/367 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E+GY + +QE + L KD+L SAQTG+GKT F L + L+ P Sbjct: 14 KAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVLQYLVETK---HPK 70 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 PL AL + PTRELA QV + + V GGV+ + L++G I+V T Sbjct: 71 YRPLRALVLTPTRELAAQVHDNVREYSKYVDIKSTVVFGGVNAKPQIATLRSGVDILVAT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D K L+ ++ ++LDEAD MLD+GF DI I+ P KR+ LMFSAT S Sbjct: 131 PGRLLDLHDQKALSFKRVEVLILDEADRMLDMGFVRDINKIISFMPAKRQNLMFSATFSN 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA +D V V A +N + ++ V + + + +++ +VF Sbjct: 191 DIKKLASGILRDPVSVETAPQNSTAKKVTHKVYKVDKNKKTEFTIKLIKEGNWNQVLVFT 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ ++ T+ L + A+ G SQ R+ AL+ +DG ++ +ATD+AARG+D+P Sbjct: 251 RTKHGANKLTEKLIKADISAAAIHGNKSQGARTKALKNFKDGSIKILVATDIAARGLDIP 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV 368 L V++ EL + PE+ +HR GRTGRAG G ++ ++ Q E+L E S + Sbjct: 311 LLPHVVNFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEESEYQSEIEKLLNEKLKSTI 370 Query: 369 ---WEPA 372 +EP Sbjct: 371 VAGFEPT 377 >gi|114561648|ref|YP_749161.1| ATP-dependent RNA helicase RhlB [Shewanella frigidimarina NCIMB 400] gi|122300890|sp|Q088J2|RHLB_SHEFN RecName: Full=ATP-dependent RNA helicase rhlB gi|114332941|gb|ABI70323.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 434 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/343 (36%), Positives = 198/343 (57%), Gaps = 8/343 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64 P+++ AL+E G+ T +Q L L KD+ AQTG+GKT+AF +A + LL A Sbjct: 18 PEILA-ALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAA 76 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 R A+ P A+ +APTRELA+Q+ ++ + L A TG+ V + GG S +R L G Sbjct: 77 PESR--KATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRAVLDKG 134 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182 I++GT GR+ D++R +++SH++AVVLDEAD M DLGF DI F+ P K R Sbjct: 135 VDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLN 194 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT+S + LA ++ D +V I + +I ++ D+ +++++ Sbjct: 195 MLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLLSLIEED 254 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 AIVF +T+ S + L +V L+G++ Q++R L+ G V +ATD Sbjct: 255 WPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEIDVLVATD 314 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+ + D+ V + +L + E+ +HR GRTGRAG+KG+S+ Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISI 357 >gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1] gi|91207782|sp|Q4IFI0|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3 Length = 486 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 194/340 (57%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA + Y T +QE + L+ +D++ A+TGSGKT AF L + LL D+ P Sbjct: 73 EACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALL---DKPQPL 129 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+G+ E L + + AV +GG+ + + L HIVV TP Sbjct: 130 ---FGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIVVATP 186 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ + KG ++ LK +++DEAD +LD+ F I+ IL P++RR +FSATIS Sbjct: 187 GRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYLFSATISS 246 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +L + +D V+V+I+S Q S + + + +D ++ ++ H ++ IVF Sbjct: 247 KIESLQRASLRDPVKVSISSNKYQTVSTLLQNYLFIPHPQKDVHLIYLINEHAGQSTIVF 306 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R + +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 307 TRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDI 366 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ +L + + +HR GRT RAG+ G+++ ++ Q Sbjct: 367 PSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQ 406 >gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178 str. F0338] gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178 str. F0338] Length = 575 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/349 (35%), Positives = 193/349 (55%), Gaps = 15/349 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---- 66 I +AL ++G + +Q L P L D++ A+TG+GKT+ FG+ + ++A + Sbjct: 89 IVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEPGF 148 Query: 67 -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D +P S P AL + PTREL+ QV +L + GGV+ + L+ GA Sbjct: 149 DDLLNPNS-PQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFEPQISALKKGA 207 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D +R L++S ++ VVLDEADEMLDLGF D+E +L P R ++F Sbjct: 208 DVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVPSHRHTMLF 267 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239 SAT+ + LA+ + + + + QH ++ YR V ++ + IL Sbjct: 268 SATMPGPVVALARKFMEHPTHIRAQDPDDQHQTVNTVKQVVYR---VHSLNKVEVLARIL 324 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G A++FC T+ + +R + LA F V +L G+L Q R AL+ R+G+ V + Sbjct: 325 QSKGRGRAVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNGKVDVLV 384 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ATDVAARGID+ D+ V++ + + + +HR GRTGRAG G +V + Sbjct: 385 ATDVAARGIDVDDVTHVVNYQCPEDEKIYIHRIGRTGRAGNSGTAVTFV 433 >gi|197251196|ref|YP_002146376.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214899|gb|ACH52296.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 457 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 206/367 (56%), Gaps = 12/367 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPMRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APSVEAI 378 AP+ +++ Sbjct: 369 APARQSL 375 >gi|10039329|dbj|BAB13307.1| vasa-related protein CnVAS1 [Hydra vulgaris] Length = 797 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 189/348 (54%), Gaps = 8/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I E + + Y+ T VQ+ + +D++ AQTGSGKT AF + + +TL+ Sbjct: 359 NIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGKTAAFLIPVLNTLMQF 418 Query: 66 ----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 S APLAL IAPTRELAVQ+ +E T + V GGV V R + Sbjct: 419 RSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGVQVAYHLRQV 478 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPK 178 Q H++VGTPGRL D + + +++++LK ++LDEAD MLD+GF +I+ I+ D PK Sbjct: 479 QQDCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDFDMPPK 538 Query: 179 K-RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 + R LMFSAT I LA + + V + I HSDI + V S + + ++ Sbjct: 539 EDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEESAKRDKLIE 598 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL G +VF T+ L ++ F ++ G+ QQ+R AL + G V Sbjct: 599 ILDTEGTNRNLVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAEFKAGTQHV 658 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 IAT VAARG+D+ D++ VI+ +L E +HR GRTGR G KG ++ Sbjct: 659 LIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAI 706 >gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44] gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44] Length = 515 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 190/341 (55%), Gaps = 7/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ G+ T +Q+ + + KD++ AQTG+GKT AFGL + + N+R Sbjct: 17 ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDG-NERHVQV- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + ++PTRELA+QV EL + T + GG ++R+ R L+ I+V TPG Sbjct: 75 ----VILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQIIVATPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + H+K VVLDEADEML++GF DDI IL + P+ + L+FSAT+ AI Sbjct: 131 RLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ Y + + + I+ + V + + + + + AI+F T Sbjct: 191 QQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELAIIFTRT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T+ L + + + G+LSQQ+R + ++ R+G + +ATDVAARG+D+ + Sbjct: 251 KRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 V + ++ +PE+ HR GRTGRAG+ G + FVIP+ M+ Sbjct: 311 SHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREME 351 >gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745] gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27] gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745] gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27] Length = 515 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 190/341 (55%), Gaps = 7/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ G+ T +Q+ + + KD++ AQTG+GKT AFGL + + N+R Sbjct: 17 ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDG-NERHVQV- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + ++PTRELA+QV EL + T + GG ++R+ R L+ I+V TPG Sbjct: 75 ----VILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQIIVATPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + H+K VVLDEADEML++GF DDI IL + P+ + L+FSAT+ AI Sbjct: 131 RLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ Y + + + I+ + V + + + + + AI+F T Sbjct: 191 QQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELAIIFTRT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T+ L + + + G+LSQQ+R + ++ R+G + +ATDVAARG+D+ + Sbjct: 251 KRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 V + ++ +PE+ HR GRTGRAG+ G + FVIP+ M+ Sbjct: 311 SHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREME 351 >gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 575 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 204/368 (55%), Gaps = 12/368 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F++ P + I +A ++ G+ TS+Q L+ KD++ A+TGSGKT F L + Sbjct: 140 FKDAPFQERIQQAFAQAGFARPTSIQGQAWPIALQNKDMICVAKTGSGKTCGFLLPVFHQ 199 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + R + P+ L +APTREL+VQ+ E + G+ C GG S H + L Sbjct: 200 HLVKQTRIQGFTKPILLVLAPTRELSVQILEEAQKFGRPLGIRSVCCYGGASKHPQIAAL 259 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKR 180 Q G V+ TPGRL D I + ++S ++ +VLDEAD MLD+GF I IL+ P+ R Sbjct: 260 QRGVECVIATPGRLNDLIEMRKADLSKVQYLVLDEADRMLDMGFEPQIRSIILNIPPENR 319 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI 238 + L+FSAT I LA ++ K+ +++N+ N + DI V+ + S++ + + I Sbjct: 320 QTLLFSATWPKEIQALAHDFLKNPIQINVGEVNALVANKDIQQTIVMCSESEKLDKLEQI 379 Query: 239 LR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 LR HG IVF + + S + L E F V +L G+ Q ER+ +Q + G+ R Sbjct: 380 LRDLMHG--KIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQLR 437 Query: 297 VCIATDVAARGIDLPDLELVIHAELSS---NPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 V IATDVAARG+D+ D+ +V++ ++ S E+ +HR GRTGRAG KG + Q + Sbjct: 438 VLIATDVAARGLDVKDVGVVVNYDMPSGVNGVEDYVHRIGRTGRAGNKGKAYTFFTQGDR 497 Query: 354 RRAERLFR 361 + A +L + Sbjct: 498 KNATQLVQ 505 >gi|118575685|ref|YP_875428.1| superfamily II helicase [Cenarchaeum symbiosum A] gi|118194206|gb|ABK77124.1| superfamily II helicase [Cenarchaeum symbiosum A] Length = 434 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 206/371 (55%), Gaps = 9/371 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE I Q + +AL + G+ +QEA + L +DV+ A TG+GKT A+ +++ Sbjct: 1 MTKFEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTGRDVVGQAHTGTGKTGAYSISM 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + L +APTRELAVQ+ E++ T V GG S+ + Sbjct: 61 LQEI-------KEGGGIQGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQSMGVQL 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ GA I+V TPGRL DHI+ ++I + +VLDEAD MLD+GF DDI+FILD +P Sbjct: 114 DALKRGAEILVATPGRLIDHIKRGSISIDRVTHLVLDEADTMLDMGFIDDIQFILDLTPD 173 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 ++ M +FSAT+ I L++ Y K+ + + +++ ID +++ ++ + +V+ Sbjct: 174 EKVMSLFSATMPIEILRLSEEYLKNPKQFLLDADDLSGEGIDQSYLVIRDREKMDYLVDF 233 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 ++ +G IVFCST+ ++L + + VA+ G++SQ R ++ R +A++ Sbjct: 234 IKENGKGQTIVFCSTKYRTRDVARMLHKRNYGAVAIEGDMSQHRREQSMSRFRTAKAQIL 293 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARGID+P + LV++ ++ + HR GRT RAG KG ++ ++ + + Sbjct: 294 VATDVAARGIDVPRVALVVNYDVPNQEMIYFHRIGRTARAGAKGRAITLVSYSSVSEFDV 353 Query: 359 LFREANVSVVW 369 + R+ V + Sbjct: 354 IKRQIKAKVTY 364 >gi|126173490|ref|YP_001049639.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|125996695|gb|ABN60770.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 411 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/344 (36%), Positives = 192/344 (55%), Gaps = 12/344 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--- 71 L+ G+ + T +Q + L ++DV+ AQTG+GKT AF L + LLA SP Sbjct: 16 LASLGFESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLA----LSPLQE 71 Query: 72 --ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P+ AL + PTRELAVQV + T + V + GGVS+ + G ++ Sbjct: 72 LTAVKPIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNAGIDVL 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH+R L++ L +V DEAD MLD+GF D+I+ +L P R+ L+FSAT Sbjct: 132 IATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTLLFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247 + AI +L+K +D + +A N ++I+ + V +DR +V +++R Sbjct: 192 LDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIE-QVVYAVDADRKTELVSHLVRSKNWHQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++F T+ V + + L + A G+LSQ R LQ + G+ +V +ATDVAARG Sbjct: 251 LIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +D+ +L+ VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 311 LDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQE 354 >gi|77917943|ref|YP_355758.1| cold-shock inducible ATP-independent RNA helicase [Pelobacter carbinolicus DSM 2380] gi|77544026|gb|ABA87588.1| ATP-dependent RNA helicase CsdA [Pelobacter carbinolicus DSM 2380] Length = 583 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 158/517 (30%), Positives = 257/517 (49%), Gaps = 29/517 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + E GY + +Q + P L +D+L AQTG+GKT AF L L S L Sbjct: 18 INRVIEEIGYETPSPIQARSIPPLLEGRDLLGQAQTGTGKTAAFALPLLSRLDLS----- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 +P L + PTRELA+QV ++ YA+ G V GG ++ ++ R LQ GAH+V Sbjct: 73 -LRSPQVLVLTPTRELALQVAEAVQT-YARHLQGFHVLPVYGGQNMGQQLRQLQRGAHVV 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+R L + L VV+DEADEML +GF DD+E IL+ +P++R+ +FSAT Sbjct: 131 VGTPGRIQDHLRRGTLKLDRLSCVVVDEADEMLKMGFIDDVEQILEHAPEQRQTALFSAT 190 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + +A+ + ++ V V I ++ I R V + +A+ IL I Sbjct: 191 MPNEVLKVARRHLREPVEVRIKAKTSTVETISQRFWQVRGVRKLDALTRILEAEDIDAMI 250 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ + + L F AL+G+++Q R ++ ++ G + +ATDVAARG+ Sbjct: 251 VFVRTKIATVELAEKLEARGFSSAALNGDMTQALREKTVERLKSGSLDIVVATDVAARGL 310 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + V++ ++ + E+ +HR GRTGRAGR+G ++ + +R + + + Sbjct: 311 DVQRISHVVNYDIPYDTESYVHRIGRTGRAGREGSAILFVAPRERRMLAAIEQATRQKIA 370 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD--PEKIAAG--- 419 PS + I R + LD++Q + + ++D + + D P +AA Sbjct: 371 PMKLPSRQDITNRRVALFKEQ--ILDAMQSQDLEFFEDLIDGIQQEFDTEPRTVAAALTY 428 Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479 L+ R L E V SG RF GGG +G + + VG Sbjct: 429 LLQKDRPLLPDEEAFEEVLPASG-GRFD--------GGGRSHADEGLQRYRIEVGRVHGV 479 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ + + I+ + IG I++ D + V++ AD Sbjct: 480 VPGHIVGAIANEAKISSRDIGQIKIYHDFSLVDLPAD 516 >gi|326526777|dbj|BAK00777.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 731 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/351 (36%), Positives = 190/351 (54%), Gaps = 19/351 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71 A+ + GY + +Q A + L+++DV+ A+TGSGKT AF L + S T L + Sbjct: 324 AIEKVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNE 383 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G +V+ T Sbjct: 384 AEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIAT 443 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179 PGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 444 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEEEELD 503 Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 R MFSAT+ PA+ LA+ Y ++ V V I + + I ++V S++ + Sbjct: 504 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESEKMSR 563 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + IL G K AIVFC+T+ S K L + F+V AL G SQ +R +L R+ R Sbjct: 564 LQKILTDLGDKTAIVFCNTKKSADNRAKDLDKAGFRVTALHGGKSQDQREISLDGFRNRR 623 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V +ATDVA RGID+PD+ VI+ E+ S+ + HR GRTGRAG+KG++ Sbjct: 624 FNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAGKKGLAT 674 >gi|168260141|ref|ZP_02682114.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350697|gb|EDZ37328.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 457 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|30062866|ref|NP_837037.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 2457T] gi|56479969|ref|NP_707684.2| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 301] gi|110805760|ref|YP_689280.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 5 str. 8401] gi|30041114|gb|AAP16844.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T] gi|56383520|gb|AAN43391.2| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301] gi|110615308|gb|ABF03975.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401] gi|281601230|gb|ADA74214.1| ATP-dependent RNA helicase [Shigella flexneri 2002017] gi|313650581|gb|EFS14984.1| ATP-independent RNA helicase dbpA [Shigella flexneri 2a str. 2457T] gi|332757684|gb|EGJ88015.1| ATP-independent RNA helicase dbpA [Shigella flexneri 4343-70] gi|333004752|gb|EGK24274.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-218] gi|333018569|gb|EGK37863.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-304] Length = 455 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 14/373 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+D + + I S + I+ + + + + +L H + +VFC+ Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L E ++L G+L Q R L +G ARV +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNEVEQSALSLHGDLEQ--RDQTLVRFANGSARVLVATDVAARGLDIKS 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ Sbjct: 308 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 366 Query: 372 APSVEAIRERDAQ 384 P+ +I +A+ Sbjct: 367 PPANSSIVTLEAE 379 >gi|296158936|ref|ZP_06841764.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] gi|295890811|gb|EFG70601.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] Length = 539 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 143/396 (36%), Positives = 209/396 (52%), Gaps = 41/396 (10%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------- 63 AL+ GY N T VQ+ + + +D++VS+ TGSGKT AF L Sbjct: 65 ALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIERFSQLQKAQAGQP 124 Query: 64 --------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108 A R P + P L + PTRELA+QV G+ L+ L + Sbjct: 125 REPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 178 Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 +GGV+ ++ L I+V TPGRL DH+ +++S L+ +VLDEAD MLD+GF +D Sbjct: 179 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIED 238 Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 IE I+ ++P R+ ++FSAT+ IT+L KD R+ I Q ++I V Sbjct: 239 IETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYVDD 298 Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 D +D + ++LR G AIVF +T+ + LA+ F+ AL G+L Q R+ + Sbjct: 299 RDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTI 358 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 + +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR G++V + Sbjct: 359 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 418 Query: 348 I---PQNMQRRAERLFR---EANVSVVWEP---APS 374 + Q +R ER R NV +EP APS Sbjct: 419 VHHAEQGALKRIERFVRAPLAVNVVEGFEPRKSAPS 454 >gi|297562761|ref|YP_003681735.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847209|gb|ADH69229.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 516 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 195/354 (55%), Gaps = 17/354 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +AL G + +QE L L D++ A+TG+GKT+AFGL L A+ D + Sbjct: 5 LADALEAEGIIEPFLIQELALPIALGGSDIIGQARTGTGKTLAFGLPLLQR--AQKDPGT 62 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P P AL + PTRELA+QV +L ++G + GG S + L+ G +VVG Sbjct: 63 PKR-PRALVVVPTRELAIQVAADLTTASKRSGTRILTVYGGRSYEPQVNGLKEGTDVVVG 121 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + K L + + AVVLDEAD+MLDLGF DIE IL +P R+ ++FSAT+ Sbjct: 122 TPGRLLDLEKQKHLRLDGVSAVVLDEADKMLDLGFLPDIERILTRTPDDRQTMLFSATMP 181 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---------DRDNAIVNILRY 241 I +L++ Y + V + ++ +ID A+ ++ D+ + +L+ Sbjct: 182 SEIVSLSRKYLRRPTHVRASDDD----EIDGSAITGQITQHAFRTHQMDKIEMLARLLQA 237 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++VFC T+ + R L F V A+ G+L Q +R AL+ R+G+ + +AT Sbjct: 238 SDHGQSMVFCQTKRACDRVAGDLEARGFAVAAVHGDLGQSQRERALRAFRNGKINILVAT 297 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 DVAARG+D+ D+ V++ E + + HR GRTGRAGR G +V FV Q M R Sbjct: 298 DVAARGLDVDDVTHVVNYETPEDEKTYTHRIGRTGRAGRSGTAVTFVDWQEMPR 351 >gi|84499824|ref|ZP_00998112.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597] gi|84392968|gb|EAQ05179.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597] Length = 451 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 199/372 (53%), Gaps = 7/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E L+E G T +Q + + +D+L AQTG+GKT AFGL L + + E + Sbjct: 12 ITENLAELGLTRPTPIQTKAIPHAMEGRDILGLAQTGTGKTAAFGLPLLTAIAREQGKPE 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P + L +APTRELA Q+ L+ T + V + +GG S++ + L G ++V Sbjct: 72 PKTV-RGLVLAPTRELAKQIVENLQAYAKGTHMRVGLVVGGASINAQVNRLARGTDVLVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + + +S + +VLDEAD+MLDLGF + I P+ R+ ++FSAT+ Sbjct: 131 TPGRLIDLLDRRAVTLSQTRFLVLDEADQMLDLGFIHALRRIATLLPQTRQTMLFSATMP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +A +Y D VRV A + I+ +A ++ ++ L H A AIVF Sbjct: 191 KLMAEIAGSYLTDPVRVETAPPGKPADKIEQSVHFIAQGEKTALLIEHLDAHRADPAIVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ R K L + VA+ G SQ +R A++ R+G A V +ATDVAARGID+ Sbjct: 251 ARTKHGSERLMKNLLAAGYAAVAVHGNKSQGQRDRAIREFREGEAMVLVATDVAARGIDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF-REANVS 366 P + V + +L + +N +HR GRT RAGR G ++ + P M R ++L +E VS Sbjct: 311 PGIRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCAPAEMGELRDIQKLLGKELPVS 370 Query: 367 --VVWEPAPSVE 376 VW S E Sbjct: 371 GGTVWSGGASAE 382 >gi|226947893|ref|YP_002802984.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str. Kyoto] gi|226840806|gb|ACO83472.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str. Kyoto] Length = 425 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 190/345 (55%), Gaps = 2/345 (0%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I +AL E GY T +QE + L KD++ AQTG+GKT AF + + Sbjct: 2 LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPILQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L + AL +APTRELA+Q+G E + AV GGVS + + + Sbjct: 62 NLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G I++ TPGR+ D K +++ +++ VLDEAD MLD+G D++ I+ P+ R Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPRGR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ IT L + KD +RV + + I V + + + ++L+ Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLLK 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++A+VF +T+ + K L E + A+ G SQ R AL ++G+ RV +A Sbjct: 242 DESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TD+AARGID+ +L V + L PE +HR GRTGRAG KG+++ Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346 >gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1] Length = 569 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 194/343 (56%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + L D Sbjct: 16 QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNIDLKSRD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + E + CI GG + R L+ G Sbjct: 76 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD++F+L + + L+FS Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S T L ++V A++G++ Q +R + R ++ + +ATDV AR Sbjct: 251 VIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353 >gi|168241214|ref|ZP_02666146.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447332|ref|YP_002045697.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194405636|gb|ACF65855.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339660|gb|EDZ26424.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 457 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGVQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicaulis alexandrii HTCC2633] gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicaulis alexandrii HTCC2633] Length = 480 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/341 (37%), Positives = 196/341 (57%), Gaps = 12/341 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +QE + L +DVL AQTG+GKT +F L + L R A Sbjct: 15 AIADAGYEKPTPIQEGAIPVALTGRDVLGIAQTGTGKTASFTLPMIERLSRGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L +APTRELA QV ++ LYAK + +A+ IGGVS +++ L GA I++ TP Sbjct: 72 MPRSLVLAPTRELAAQVADNVK-LYAKNHKLNMALLIGGVSFEPQKKILDQGADILIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH GL ++ ++ +V+DEAD MLD+GF DIE IL P +R+ L FSAT+ Sbjct: 131 GRLLDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERILKLLPPRRQTLFFSATMPGE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-----RDNAIVNILRYHGAKNA 247 I L + +D RV + + Q +D + +L +SD + A+ + G KN Sbjct: 191 IKHLVDTFLRDPERVEV-TRPAQTADTITQFIL-RVSDNQARTKREALRAAINRDGVKNG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+ + V + L H F + G+L Q +R+ L + G R+ +A+DVAARG Sbjct: 249 IIFCNRKRDVDIVARSLQRHGFSAAPIHGDLDQSQRTKTLAEFKSGELRLLVASDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+P + V + ++ N ++ +HR GRTGRAG+KG +V ++ Sbjct: 309 LDIPAVSHVFNVDIPRNADDYVHRIGRTGRAGQKGEAVTLV 349 >gi|146276411|ref|YP_001166570.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554652|gb|ABP69265.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 453 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 190/355 (53%), Gaps = 4/355 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L++ + T +Q + ++ +D++ AQTG+GKT+AFGL L LL Sbjct: 21 ILQGLAKAQFTKATPIQVEAIPHVMQGRDLMGLAQTGTGKTLAFGLPLLHRLLGVGHPPP 80 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P + AL +APTREL Q+ LE T V V GG S++R+ L GA I+V Sbjct: 81 PRTI-RALILAPTRELVSQIAANLELFTKGTPVKVVTITGGASINRQTERLARGADIMVA 139 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + + H +VLDEAD+MLD+GF + I P KR+ L+FSAT+ Sbjct: 140 TPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQTLLFSATMP 199 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + ++ VRV +A + I + D+ + + L H + A+VF Sbjct: 200 KLIEELAHTFLREPVRVQVAPPGKPVEKIAQGVHFIPQGDKAKLLESYLLKHPGEQALVF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K+L F+ ++ G SQ +R L RDG V +ATDVAARGID+ Sbjct: 260 GRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGTLDVLVATDVAARGIDI 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362 P + V + ++ + PEN +HR GRT RAG +G +V FV P M R E+L ++ Sbjct: 320 PGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMDEFRAVEKLLKQ 374 >gi|119962035|ref|YP_948481.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1] gi|119948894|gb|ABM07805.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1] Length = 566 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 195/360 (54%), Gaps = 14/360 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I E+L++ G + +Q L L D++ A+TG+GKT+ FG+ + Sbjct: 43 NVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQRVAGR 102 Query: 66 ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +D + + AP AL I PTRELAVQV +L+ K +A GG + + L Sbjct: 103 DDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAASRKRNARIATIYGGRAYEPQIDAL 162 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 Q G IVVGTPGRL D + K L++ ++K V+LDEADEMLDLGF D+E ++ +P R+ Sbjct: 163 QKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEADEMLDLGFLPDVETLIAGTPAVRQ 222 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAI 235 L+FSAT+ + +A+ Y + A N R + YRA + D+ + Sbjct: 223 TLLFSATMPGPVIAMARRYMTQPTHIRAADPNDEGLTKRDIRQLIYRAHSM---DKTEVV 279 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 IL+ G I+F T+ + ++ + L + F A+ G+L Q R AL+ R+ + Sbjct: 280 ARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNKV 339 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 V +ATDVAARGID+ D+ VI+ + + + LHR GRTGRAG KG +V FV +M R Sbjct: 340 DVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDMPR 399 >gi|254442828|ref|ZP_05056304.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] gi|198257136|gb|EDY81444.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] Length = 406 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/372 (34%), Positives = 204/372 (54%), Gaps = 15/372 (4%) Query: 1 MKIFENIPQV--IGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57 MK F+ + V + + E+G + T +QE + L+ E D + AQTG+GKT AFGL Sbjct: 36 MKTFKELGVVADLIRGIEEKGILEPTEIQELAIPLLLKNEGDFVGQAQTGTGKTAAFGLP 95 Query: 58 LASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114 L R P + AL ++PTRELA Q+ ++L + Y K + GG + Sbjct: 96 LLQ-------RIDPTQKRVQALVLSPTRELAKQIAKQL-FHYTKYTAKIFTEAVAGGEKI 147 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L HIVV TPGRL D ++ K +++S + +VLDEADEML +GF+D++ IL+ Sbjct: 148 EGQIAALSRTTHIVVATPGRLIDLLKVKAVDLSTIDTLVLDEADEMLSMGFQDELNKILE 207 Query: 175 SSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 + +R +FSAT+ +T + + Y DA V + +N + +I++ + + ++ + Sbjct: 208 FTRGAKRTWLFSATMPKGVTRMIERYLSPDAKHVTVDRKNPVNKNIEHWYTVCTIEEKPD 267 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 I ++ + +VFC ++A V L E F+V L G+LSQ++R ++ R Sbjct: 268 EIARFIKAQKGRRGVVFCRSKAGVQNIANELTERGFEVATLQGDLSQKDRDKVMRGFRKE 327 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 R+ V ++TDV+ARGID+ L V+H +L E HRSGRT RAGRKG+S+ I + Sbjct: 328 RSEVLVSTDVSARGIDVEGLAYVVHHQLPDQIEYYTHRSGRTARAGRKGISMAFITRGDV 387 Query: 354 RRAERLFREANV 365 +R L E ++ Sbjct: 388 KRIRELQTELHI 399 >gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1 [Anolis carolinensis] Length = 445 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 114/345 (33%), Positives = 194/345 (56%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + +V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + LL Sbjct: 23 VTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPILQALLETP 82 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF AL + PTRELA Q+ + E L + GV AV +GG+ + + L H Sbjct: 83 QRF------FALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAKKPH 136 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 137 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 196 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + KD V+ ++S+ + + V + +D+ +V IL Sbjct: 197 SATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYVFIPSKFKDSYLVYILNELAGN 256 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G+++Q +R +L + V +ATDVA+ Sbjct: 257 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKARSVLLATDVAS 316 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+ + Q Sbjct: 317 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 361 >gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185] gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185] Length = 537 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/350 (35%), Positives = 193/350 (55%), Gaps = 10/350 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++ AL E+G V+ +Q L L D++ A+TG+GKT+ FG+ L S + A + Sbjct: 41 PDIVA-ALEEKGIVHPFPIQAMTLPVALSGHDIIGQARTGTGKTLGFGVPLLSRVTAPGE 99 Query: 68 RF-----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +P P A+ + PTRELAVQV +LE K G+ +A GG + + L+ Sbjct: 100 TSKAAVPAPEGKPQAMVVVPTRELAVQVASDLEAAAKKRGIRIAQIYGGRAFEPQVERLE 159 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G ++VGTPGR+ D L+++++ +VLDEADEMLDLGF D+E IL +P R+ Sbjct: 160 KGVEVIVGTPGRIIDLATRGHLDLAYVGCLVLDEADEMLDLGFLPDVEKILAMTPGGRQT 219 Query: 183 LMFSATISPAITTLAKNYQKDAVRV----NIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 ++FSAT+ A+ TLA+ Y + + ASE S+I+ D+ + I Sbjct: 220 MLFSATMPGAVVTLARRYMTQPTHIRAMQDDASEAETASNIEQFVYRAHAMDKVEMLARI 279 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ I+F T+ + ++ + L F L G+L Q R AL+ R G+ V Sbjct: 280 LQAKDRGLTIIFSRTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAFRSGKVDVL 339 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARGID+ D+ VI+ + + + +HR GRTGRAG+ G++V ++ Sbjct: 340 VATDVAARGIDVEDVTHVINYQCPEDEKTYVHRIGRTGRAGKTGIAVTLV 389 >gi|229094565|ref|ZP_04225632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42] gi|228688812|gb|EEL42643.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42] Length = 481 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|91788228|ref|YP_549180.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] gi|91697453|gb|ABE44282.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] Length = 422 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/337 (38%), Positives = 189/337 (56%), Gaps = 10/337 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ ++GY T++Q + L +DV+ SAQTGSGKT AF L + L +P Sbjct: 19 AIGDKGYRAPTAIQSQAIPAILLGRDVVGSAQTGSGKTAAFALPMLQQLAN-----APTG 73 Query: 74 APL---ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P L + PTRELA QVG + Y V VAV GGVS++ + +L+ GA IV Sbjct: 74 TPRPTRGLILVPTRELAAQVGEAIAGFAKYLPQRVKVAVVFGGVSINPQMMNLRGGADIV 133 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + L IS + +VLDEAD +LDLGF +++ IL+ P +R+ L FSAT Sbjct: 134 VATPGRLLDLLEHNALKISEVSTLVLDEADRLLDLGFGEELGRILELLPPRRQNLFFSAT 193 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 PAI LA++ D +R+ + + DI RA+ V S R + ++++ + A+ Sbjct: 194 FPPAIEVLAESMLHDPLRIEVQAVPETKPDIAQRAIQVDASRRTQLLRHLVQTEKWERAL 253 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF +T+ + L + + GELSQ +R+ LQ R +V +ATDVAARGI Sbjct: 254 VFVATKHAAEIVADKLRKVHIEAEPFHGELSQGKRTQVLQDFRIKAVQVVVATDVAARGI 313 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ + +V++ +L + + HR GRTGRAG G++V Sbjct: 314 DIAQMPVVVNYDLPRSAVDYTHRIGRTGRAGESGLAV 350 >gi|71987143|ref|NP_001022623.1| INitiation Factor family member (inf-1) [Caenorhabditis elegans] gi|124217|sp|P27639|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase eIF4A; AltName: Full=Initiation factor 1 gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans] gi|532818|gb|AAA21170.1| Initiation factor protein 1, isoform a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 402 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 119/356 (33%), Positives = 197/356 (55%), Gaps = 9/356 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P KDV+ AQ+G+GKT F +++ + E+ AL Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQ------AL 101 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V + CIGG SV ++R L+ G H+VVGTPGR+ D Sbjct: 102 VMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDM 161 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I L+ S +K VLDEADEML GF+D I + S P+ ++++ SAT+ + + Sbjct: 162 INRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTN 221 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + ++ +R+ + + I + V + + + + ++ A++FC+TR V Sbjct: 222 RFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKV 281 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E+ F V L G++ Q ER ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 282 DTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVI 341 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 + +L SN EN +HR GR+GR GRKG+++ + +N R+ + + E+ + E P Sbjct: 342 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEI--ESYYTTQIEEMP 395 >gi|320536466|ref|ZP_08036500.1| DEAD/DEAH box helicase [Treponema phagedenis F0421] gi|320146675|gb|EFW38257.1| DEAD/DEAH box helicase [Treponema phagedenis F0421] Length = 618 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 198/382 (51%), Gaps = 9/382 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 ++ +A+ +G+ T +Q + P L E +++ A+TG+GKT AFGL L L A+ Sbjct: 13 IVLQAIEAKGFETPTPIQ-ILAIPRLLSGETNIIAKARTGTGKTGAFGLPLIQELRAD-- 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + PTRELA+QV E+E +T +AV GG S+ + R L+ GA I Sbjct: 70 ----LGHPRALVLVPTRELAMQVAAEIESFRIETYPRIAVVYGGSSMSEQLRALKKGAEI 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +VGTPGR+ DHI L+++ ++ +LDEADEML++GF DIE I + R+LMFSA Sbjct: 126 IVGTPGRIIDHIERGSLDLTQIEYFILDEADEMLNMGFISDIETIFSKANSNARILMFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I ++A ++ D V S + V D+ A++ ++ Sbjct: 186 TMPKPILSIASDFMGDYEIVAEELSEEPVSLTEQFYWFVREEDKIEALIRLIDITPDFYG 245 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VFC T+ K L E ++ AL G++ Q +R L R + R +ATDVAARG Sbjct: 246 LVFCQTKLDADSVAKELEERGYEAAALHGDIPQNQREKILSRFRSKKIRTLVATDVAARG 305 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 ID+ + V++ + + HR GRTGRAG G +V I N R+ + L R A Sbjct: 306 IDIEGITHVVNYAIPYDGPTYTHRIGRTGRAGSTGTAVSFIRPNESRKIDYLARHARGEF 365 Query: 368 VWEPAPSVEAIRERDAQRILQD 389 PS+E + RIL + Sbjct: 366 KEGKIPSIEKVLAYKETRILSE 387 >gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB] Length = 606 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 198/355 (55%), Gaps = 13/355 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L++ GY + +Q + L D++ AQTG+GKT AF L L + + Sbjct: 19 QTLTQIGYETPSPIQAQCIPVLLEGHDLIGMAQTGTGKTAAFALPLMEQIDVK------L 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P AL + PTRELA+QV L+ YAK G V GG S + + L GAH++VG Sbjct: 73 TKPQALILTPTRELAIQVAEALQ-TYAKNLPGFHVLPIYGGQSYTIQLKQLSRGAHVIVG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ K LN+ HLK +VLDEADEML +GF DD+E+IL+ +P + + +FSAT+ Sbjct: 132 TPGRVMDHLERKTLNLDHLKTMVLDEADEMLRMGFIDDVEWILERTPAQHQTALFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIV 249 I +A+ Y + + I S + I V+ + +A+ IL + AI+ Sbjct: 192 EQIRRVAQKYLVEPREIKIKSATATVAAIRQVYWQVSGMHKLDALTRILEVEEDFDAAII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + L+ + AL+G+L+QQ R ++ ++ G + IATDVAARGID Sbjct: 252 FVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLKSGALDIVIATDVAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFR 361 +P + V++ ++ + E +HR GRTGRAGR G ++ FV P+ M R ER R Sbjct: 312 VPRVSHVVNYDIPYDTEAYVHRIGRTGRAGRTGNAILFVAPREIRMLRTIERATR 366 >gi|300118846|ref|ZP_07056566.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus cereus SJ1] gi|298723814|gb|EFI64536.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus cereus SJ1] Length = 481 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|83953760|ref|ZP_00962481.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1] gi|83841705|gb|EAP80874.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1] Length = 444 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/355 (32%), Positives = 200/355 (56%), Gaps = 4/355 (1%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE +P+ + +AL+ G + T +Q+ + + +DV+ AQTG+GKT AFG+ L Sbjct: 12 MSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPL 71 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + +L R P + L +APTRELA Q+ L+ T + + +GG S++ + Sbjct: 72 VAQMLEREARPEPRTV-RGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQI 130 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + ++ G ++V TPGRL D + + + + +VLDEAD+MLD+GF D+ I PK Sbjct: 131 KRMERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPK 190 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT+ + +A +Y +R+ ++ + I +A +++ + ++ + Sbjct: 191 ERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIEL 250 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L H + A+VF T+ + K L + F+ ++ G SQ +R A++ + G V Sbjct: 251 LGKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVL 310 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++ F P M Sbjct: 311 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 365 >gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044] gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044] Length = 439 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/335 (37%), Positives = 197/335 (58%), Gaps = 4/335 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+ GY + T +Q + ++ D+ SAQTGSGKT AF L +A N R P Sbjct: 14 KALNAAGYKSPTEIQCKAIPKAVKGFDLRASAQTGSGKTAAFLLPALHHCVA-NPR-KPT 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 P L ++PTRELA+Q+ + + V +VCI GGV H ++R L+ I++ T Sbjct: 72 VGPRVLILSPTRELAMQIATQADKYSKFLNRVKSVCISGGVPYHVQQRKLRRPYEILIAT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D+I K +N+S ++ +VLDEAD MLD+GF + +E I ++P R+ L+FSAT+ Sbjct: 132 PGRLIDYINQKAINLSAIEILVLDEADRMLDMGFIEPVEKIAAATPSSRQTLLFSATMQG 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250 ++ L+ + + + I SE +H +I + V L ++ + +IL K+AIVF Sbjct: 192 SVLNLSNRLLNEPMDIVIHSEKTKHENITQKLHYVDGLQHKNQLLEHILNDDVVKHAIVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 ST+ S+ L + AL G++SQ++RS + +R G+ +V +ATDVAARGID+ Sbjct: 252 TSTKRHASQLVFELHDKGLLAGALHGDMSQRQRSRTIAQLRTGKIKVLVATDVAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++ VI+ +L N E+ +HR GRTGRAG G ++ Sbjct: 312 QNITHVINFDLPRNVEDYVHRIGRTGRAGAAGTAL 346 >gi|167549858|ref|ZP_02343616.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325031|gb|EDZ12870.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 457 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGVQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 513 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 193/355 (54%), Gaps = 5/355 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++++GY + +Q + L KDV+ +AQTG+GKT F L L LL +R + Sbjct: 34 ILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLTRGNR-A 91 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV +E + AV GGV + + L G I+V Sbjct: 92 QAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVVFGGVGIGPQISKLGKGVDILVA 151 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + LN + L+ ++LDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 152 TPGRLLDLFNQRALNFNQLEVLILDEADRMLDMGFIHDIKKILKVLPAKRQNLMFSATFS 211 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N ++ V + A++++++ + K +VF Sbjct: 212 DDIRKLAKGLVNNPVEISVTPRNATAKTVEQYIYQVDQKQKTAALIHLIKQNDWKQVLVF 271 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + A+ G SQ R+ AL + G RV +ATD+AARGID+ Sbjct: 272 SRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEVRVLVATDIAARGIDI 331 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362 L V++ +L + PE+ +HR GRTGRAG G +V ++ + R ERL ++ Sbjct: 332 DQLPNVVNFDLPNVPEDYVHRIGRTGRAGADGQAVSLVSGDESKLLRDIERLIKQ 386 >gi|42521946|ref|NP_967326.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] gi|39574476|emb|CAE77980.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] Length = 412 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/332 (37%), Positives = 182/332 (54%), Gaps = 2/332 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ G+ T +Q + L+ +DVL AQTG+GKT AF + + + + E A Sbjct: 16 LTDNGFFRTTDIQYKAIPSILKGEDVLAIAQTGTGKTAAFAIPIINMIHTEKSS-KRAIG 74 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 L + PTRELA Q+G L T V GGV + + LQ+G I++ TPGR Sbjct: 75 IKCLILVPTRELAQQIGEVFNKLSKHTKVKPFALFGGVEQDAQIQKLQDGIDILISTPGR 134 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + D I ++IS ++ +VLDEAD MLDLGF DDI + K+ + L FSATI+P I Sbjct: 135 MFDLIAQGHVDISRIETLVLDEADHMLDLGFIDDITSVKRKLTKRHQTLFFSATINPEIK 194 Query: 195 TLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + A+R+ I+ E+ +I + + V + D+ + LR + I+F T Sbjct: 195 KLAFSQVRSSAIRIQISPEDPVSKNITHFVMHVEMDDKRFFLAEYLRQNPDGKFIIFVRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R R K LA Q + L GE Q +R+ ++ R G ++ IATD++ARGID+PD+ Sbjct: 255 RVRAERVAKALARVEVQSLTLHGEKDQTDRAEVMKTFRKGDCKILIATDLSARGIDIPDV 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VI+ +L PEN +HR GRTGR KG++V Sbjct: 315 THVINYDLPEKPENYVHRIGRTGRGFNKGVAV 346 >gi|228936735|ref|ZP_04099526.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822944|gb|EEM68785.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 481 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY N T VQ ++ L+++D++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYENPTEVQGEVIPVALKKRDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMDLPTYIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG KG ++ I R E + + AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYEDRFLEEIESYIGFEIPKAYAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|325285240|ref|YP_004261030.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga lytica DSM 7489] gi|324320694|gb|ADY28159.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM 7489] Length = 602 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 149/516 (28%), Positives = 259/516 (50%), Gaps = 28/516 (5%) Query: 13 EALSERGYVNLTSVQEA----ILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 +A+ + G+ + + VQE +LN D D++ AQTG+GKT AFG L + Sbjct: 15 DAIVDLGFESPSEVQEKAIPILLNEDT---DLVALAQTGTGKTAAFGFPLIQKID----- 66 Query: 69 FSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 S + L ++PTREL +Q+ EL+ + + G+ V GG S+ + ++ GA I Sbjct: 67 -SSSRTTQGLILSPTRELCLQITNELKAYSKYEKGLNVVAIYGGASITDQANQIRRGAQI 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGR+ D I +NIS L VLDEADEML++GF +DI+ IL ++P ++ +FSA Sbjct: 126 VVATPGRIKDMISRGMVNISKLDYCVLDEADEMLNMGFYEDIKDILSNTPDEKFTWLFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ ++T+AK + + + + S+N + + + +V DR A+ + + + Sbjct: 186 TMPREVSTIAKKFMHNPQEITVGSKNAGATTVQHEYYVVGGRDRYPALKRLADTNPDIFS 245 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VFC T+ R + L E + AL G+LSQ +R + R + ++ +ATDVAARG Sbjct: 246 VVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQMLVATDVAARG 305 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 ID+ D+ VI+ +L E HRSGRTGRAG+ G+S+ ++ ++ R+ + L R+ Sbjct: 306 IDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVTRSELRKIKALERKLQTEF 365 Query: 368 VWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVL--LAKHDPEK--IAAGF 420 + + P+ I E + ++D D ++ + ++L + K D K ++ F Sbjct: 366 LSKKIPTGMEICEIQLHHLANKIKDTEINDEVESYLPAINEILEGVDKEDLIKKIVSVEF 425 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 R + ++G DR R + + GS + ++VG + + Sbjct: 426 TRFF-------DYYNKTRDLNGSDRGERGDREERGKNKAEIPTSGSVRYFINVGERDDYD 478 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 L L + G+ ++ + + V+ +F A+ Sbjct: 479 WMTLKDFLRNTVGLGKEDVFKVDVKESFSFFNTDAE 514 >gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42] gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42] Length = 527 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 189/345 (54%), Gaps = 10/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + A+++ GY T +Q + L +D+ AQTG+GKT +F L + S L R Sbjct: 33 QKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRAR 92 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P L + PTRELA QV E + VA+ IGGVS + R L+ GA ++ Sbjct: 93 ---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGADVL 149 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH L +S ++ +V+DEAD MLD+GF DIE I P R+ L FSAT Sbjct: 150 ICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSAT 209 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHG 243 + P I LA + ++ R+ +A + R VA +D +LR Sbjct: 210 MPPEIQKLADRFLQNPERIEVARPASAAKTVTQR--FVASHSKDYEKRAVLRELVRAQTE 267 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG ++ +A+DV Sbjct: 268 LKNAIIFCNRKKDVADLFRSLERHGFNVGALHGDMDQRSRTMMLQNFRDGNLQLLVASDV 327 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 328 AARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 372 >gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans ORS 2060] Length = 465 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 197/369 (53%), Gaps = 15/369 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+S GY T +Q + L +DVL AQTG+GKT AF L + + L R A Sbjct: 14 QAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPMLTRLEQGRAR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV E + VA+ IGGVS + + G +++ TP Sbjct: 71 RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALLIGGVSFADQDAKITRGVDVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT+ P Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQTLFFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA---KNA 247 I LA ++ + VR+ +A S I+ R LVA + LR GA KN Sbjct: 191 IQRLADDFLHNPVRIEVARPASTASTIEQR--LVATGGEGHQKRKTLRRLIRGAEELKNG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+ + V++ K LA H F V AL G++ Q+ R AL R G + +A+DVAARG Sbjct: 249 IIFCNRKRDVAQLQKSLANHGFTVAALHGDMDQRARMAALDAFRSGEIPLLVASDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+P + V + ++ + E+ +HR GRTGRAGR G + ++ R + A S+ Sbjct: 309 LDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRNGSAFTLV-----ARGDEKALAAIESL 363 Query: 368 VWEPAPSVE 376 + +P P E Sbjct: 364 IGQPIPWAE 372 >gi|110598174|ref|ZP_01386451.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans DSM 13031] gi|110340188|gb|EAT58686.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans DSM 13031] Length = 418 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/339 (37%), Positives = 188/339 (55%), Gaps = 1/339 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I + I ++L E GY T +Q + L+ D+L AQTG+GKT AF + + LL+E Sbjct: 7 DIIEPILKSLQEEGYTTPTPIQAEAIPIVLQGNDLLGCAQTGTGKTAAFAIPILQ-LLSE 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + +L + PTRELA+Q+G TG+ V GGV+ + + L+NG Sbjct: 66 SHSNEKKRKIRSLILTPTRELAIQIGESFRAYGRHTGLNNTVIFGGVNQNPQISALRNGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL D + LN+ ++ VLDEAD MLD+GF DI+ +L PKK++ L F Sbjct: 126 DIVIATPGRLLDLMNQGFLNLRDVEIFVLDEADRMLDMGFIHDIKKVLAVLPKKKQSLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P I LA + V++ + I V ++++ +V+IL+ K Sbjct: 186 SATLPPEIVRLAGTILHNPSEVSVTPISSTVDIIQQHIYFVDKGNKNSLLVDILKDQSIK 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A+VF T+ + K L+ H + A+ G +Q R AL ++ RV +ATD+AA Sbjct: 246 TALVFTRTKHGADKVVKFLSHHNIRAEAIHGNKAQNARQRALSNFKNQTTRVLVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 RGID+ +LE VI+ E+S+ E +HR GRTGRAG KG + Sbjct: 306 RGIDVDELEYVINFEISNIAETYVHRIGRTGRAGAKGTA 344 >gi|157376984|ref|YP_001475584.1| ATP-dependent RNA helicase DbpA [Shewanella sediminis HAW-EB3] gi|157319358|gb|ABV38456.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 458 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/336 (37%), Positives = 192/336 (57%), Gaps = 8/336 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + L GY ++T +Q L L +DV+ +TGSGKT AFGL L L + Sbjct: 10 PELL-DNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLNVKRF 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R +L + PTRELA QV +E+ L + V GGV + + L++GAH Sbjct: 69 RIQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAH 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ + L++ + +VLDEAD ML++GF D+++I+ P++R+ L+FS Sbjct: 123 IIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQTLLFS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I +A+ + V V + S + S + + + DR A+ +L H ++ Sbjct: 183 ATFPKQIQKIAEEIMYEPVMVKVTSTHDSSSIDQHFYQIDSNKDRQKALRLLLLQHRPES 242 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VFC+T+ LA F VVAL G+L Q++R L + A + +ATDVAAR Sbjct: 243 AVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAAR 302 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 G+D+ L++VI+ E + + E +HR GRTGRAG KG Sbjct: 303 GLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKG 338 >gi|303238460|ref|ZP_07324994.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] gi|302593858|gb|EFL63572.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] Length = 481 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/385 (31%), Positives = 202/385 (52%), Gaps = 8/385 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN + + +A+ Y + T VQE ++ L KDV+V +QTGSGKT AF + + Sbjct: 6 FENYKLSSELLKAIDMLNYKSPTKVQEMVIPAVLEHKDVIVKSQTGSGKTAAFAIPICDL 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + + ++ P L I PTRELA+QV ++ L + V+ G S + + ++L Sbjct: 66 VDWDENK------PQVLVITPTRELAIQVKEDIFNLGRFKRLKVSAIYGRSSFYNQEKEL 119 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + H+VVGTPGR+ DH+ + S +K +++DEADEML +GF + IE I+ P +R Sbjct: 120 KQKTHVVVGTPGRIIDHLERGTFDTSKIKYLIIDEADEMLSMGFVEQIEDIIGKLPDERT 179 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 ++ SAT+ I L Y K+ V I EN+ I V +D+ N + +I Sbjct: 180 TILLSATLPKDIAVLCDKYMKNPVYAEIEEENKAIDRIVQERYEVDENDKLNLLRDITTL 239 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + I+FCST+ LA+ + + G + Q +R + + G R +AT Sbjct: 240 ENPDSCIIFCSTKIKTDELFDELAKLNYTCEKIHGGMEQSDRLRVMNDFKQGYFRYLVAT 299 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGID+ D+ LVI+ ++ + E+ +HR GRTGR R G ++ + + + + + + Sbjct: 300 DVAARGIDIDDISLVINYDIPQDKESYVHRIGRTGRVDRNGKAITFVTPDESKYLDDIHK 359 Query: 362 EANVSVVWEPAPSVEAIRERDAQRI 386 + + P EA+++++ + I Sbjct: 360 YIGKEIELKERPDKEAVKDKEQEFI 384 >gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 214/387 (55%), Gaps = 17/387 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A+SE+GY + T +Q + L D+L AQTG+GKT F L L L A + Sbjct: 12 IVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQRLSAMPRQKI 71 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128 P+ AL +APTRELA QV + Y K + + CI GGV ++ + L+ G I+ Sbjct: 72 NGHVPIRALILAPTRELAAQVEESVRQ-YGKYLPLTSACIFGGVGINPQITLLKRGVDIL 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ +N+ H++ +VLDEAD MLD+GF DI +L + P KR+ L+FSAT Sbjct: 131 VATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPPKRQNLLFSAT 190 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRYHGAK 245 + I LA + + + +A R++S ++ A + DRD + ++++ H K Sbjct: 191 FADEIKKLADSLLNNPALIEVA---RRNSTVEVIAQKIHPVDRDKKHPMLAHLIKTHQWK 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ ++ + L +A+ G SQ R+ AL +DG+ IATD+AA Sbjct: 248 QVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTALIATDIAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-R 361 RGID+ L V++ +L + PE+ +HR GRTGRAG G +V ++ +++ ER R Sbjct: 308 RGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDLLHDIERFIKR 367 Query: 362 EANVSVV--WEPAPSV--EAIRERDAQ 384 E V V+ +EP P+ + I+ R Q Sbjct: 368 EIPVEVIAGFEPDPTAKPQPIQLRSGQ 394 >gi|302335558|ref|YP_003800765.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084] gi|301319398|gb|ADK67885.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084] Length = 510 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 188/341 (55%), Gaps = 10/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY T VQ + P LR +DV+ +AQTG+GKT AF LL D A Sbjct: 57 AVRDMGYEVPTPVQARSIPPALRGRDVIAAAQTGTGKTAAF-------LLPSLDGLPHAQ 109 Query: 74 A---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A PL L + PTRELA Q+ + A+TG A +GGV +RR L+ G ++V Sbjct: 110 AGQGPLMLVVTPTRELAQQIDEVARAICARTGHTAATVVGGVGYEPQRRALRRGCDLLVA 169 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ ++ +VLDEAD MLD+GF + I+ +P+ R+ L+FSAT+ Sbjct: 170 TPGRLIDLMDQGDAHLGEVQVLVLDEADRMLDMGFLPAMRKIVGRTPEGRQTLLFSATLD 229 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +T+ ++ KD VRV IA + I+ + V+ + A+ ++L GA+ IVF Sbjct: 230 GHVTSNTESLVKDPVRVEIAHKGTAAETIEQFVLGVSPEAKHAALTHVLENEGAERVIVF 289 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C + + L F + G SQ +R AL+ R+G V +ATDV ARGID+ Sbjct: 290 CRGKHRADGICRRLRRKGFSAAPIHGNRSQNQRERALRGFREGSVGVLVATDVLARGIDI 349 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 PD+ V++ ++ + E+ +HR GRTGRAG G ++ + ++ Sbjct: 350 PDVAYVVNFDVPGDAEDYIHRIGRTGRAGESGWALTFVTED 390 >gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium HTCC2083] gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium HTCC2083] Length = 495 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 199/355 (56%), Gaps = 15/355 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ + GY + T +QE + P L +DVL AQTG+GKT +F L + + L Sbjct: 11 PKVL-KAIDDAGYESPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMITMLGKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P +L + PTRELA QV + + + A+ IGGVS + R + G Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFKEQDRLIDKGVD 126 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH+ L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FS Sbjct: 127 VLIATPGRLLDHVERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFS 186 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNIL 239 AT++P I + + + RV +A + +I+ ++ S +D A+ ++ Sbjct: 187 ATMAPEIERITNTFLSNPARVEVARQATASENIEQVVMMFKGSRKDREGTEKRKALRKLI 246 Query: 240 RYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 G NAI+FC+ + V K L ++ + + G+L Q +R+ L R+G R Sbjct: 247 DAEGDACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFREGGLRF 306 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351 +A+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G +V + +P++ Sbjct: 307 LVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAVMICVPRD 361 >gi|229005142|ref|ZP_04162865.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4] gi|228756117|gb|EEM05439.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4] Length = 433 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 198/348 (56%), Gaps = 10/348 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 9 ISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL------- 61 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E+E L + + V GG V ++ R L+ Sbjct: 62 EKIDPESSDVQALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLKGN 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DH+R + + +S++ +VLDEAD+ML GF DIE IL+ +P+ ++ ++ Sbjct: 122 THIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTML 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y K+ + I S ++I R + + +A+ +++ Sbjct: 182 FSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQRVIETTDRAKQDALRHVMDRDQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + + L G+LSQ +R ++ RD + + IATDVA Sbjct: 242 FLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ FV P++ Sbjct: 302 ARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKD 349 >gi|30265472|ref|NP_847849.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames] gi|47531039|ref|YP_022388.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|49188291|ref|YP_031544.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Sterne] gi|65317435|ref|ZP_00390394.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis str. A2012] gi|165872531|ref|ZP_02217164.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167636244|ref|ZP_02394547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|167641411|ref|ZP_02399661.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|170689199|ref|ZP_02880396.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|170708677|ref|ZP_02899116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|177651890|ref|ZP_02934473.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190568924|ref|ZP_03021826.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|218906634|ref|YP_002454468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|228930460|ref|ZP_04093460.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228949176|ref|ZP_04111444.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124957|ref|ZP_04254131.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201] gi|229600530|ref|YP_002869663.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] gi|254687105|ref|ZP_05150963.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. CNEVA-9066] gi|254724112|ref|ZP_05185897.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. A1055] gi|254733618|ref|ZP_05191335.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. Western North America USA6153] gi|254742162|ref|ZP_05199849.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. Kruger B] gi|254755928|ref|ZP_05207960.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. Vollum] gi|254761640|ref|ZP_05213660.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus anthracis str. Australia 94] gi|30260150|gb|AAP29335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Ames] gi|47506187|gb|AAT34863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. 'Ames Ancestor'] gi|49182218|gb|AAT57594.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Sterne] gi|164711754|gb|EDR17298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167510586|gb|EDR85982.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|167528359|gb|EDR91130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|170126459|gb|EDS95347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|170666842|gb|EDT17608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|172082594|gb|EDT67658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190559991|gb|EDV13974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|218536757|gb|ACK89155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|228658458|gb|EEL14124.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201] gi|228810459|gb|EEM56812.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829179|gb|EEM74816.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229264938|gb|ACQ46575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] Length = 481 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|291616471|ref|YP_003519213.1| DbpA [Pantoea ananatis LMG 20103] gi|291151501|gb|ADD76085.1| DbpA [Pantoea ananatis LMG 20103] Length = 459 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 209/375 (55%), Gaps = 10/375 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 ++P + L E GY ++T VQ A L L +DV A+TGSGKT AFG+ L + Sbjct: 7 LNSLPDSQLDNLREMGYTSMTPVQAATLPAILDGRDVRAQAKTGSGKTAAFGIGLLQHI- 65 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121 ++ F AL + PTRELA QV L L + + ++ +C GG + +R L Sbjct: 66 -DSAHFQTQ----ALILCPTRELADQVSNVLRQLARFTRNIKILTLC-GGQPMSAQRDSL 119 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + HIVVGTPGR+ DHI+ + L + L+ +VLDEAD ML++GFRDD+E I+ ++P R+ Sbjct: 120 VHAPHIVVGTPGRILDHIKRETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQ 179 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSAT I L++ +Q++A+ V + E + I+ + + + ++ + ++++L Sbjct: 180 TLLFSATWPEGIAALSQRFQREALSV-VTEEVSELPAIEQQFIEASHGEKLSLLISLLSE 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + +VFC+T+ L + L G+L Q++R L +G RV +AT Sbjct: 239 RQPSSCVVFCNTKRECDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+D+ L LV++ +L+ +PE LHR GRT RAG +G +V + + RA L Sbjct: 299 DVAARGLDIKLLSLVVNYQLAWDPEVHLHRIGRTARAGEQGAAVSFVAADEMARAHALED 358 Query: 362 EANVSVVWEPAPSVE 376 + W A S++ Sbjct: 359 FLQQKLPWVAASSLK 373 >gi|238787599|ref|ZP_04631397.1| DEAD/DEAH box helicase domain protein [Yersinia frederiksenii ATCC 33641] gi|238724386|gb|EEQ16028.1| DEAD/DEAH box helicase domain protein [Yersinia frederiksenii ATCC 33641] Length = 609 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 140/400 (35%), Positives = 207/400 (51%), Gaps = 19/400 (4%) Query: 44 AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TG 102 AQTGSGKT AFGL L + E AP L +APTRELA+QV L G Sbjct: 2 AQTGSGKTAAFGLPLLHNIDPE------LKAPQVLVLAPTRELAIQVAEALTSFSKDIKG 55 Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162 V V GG + R L+ G +VVGTPGRL DH++ LN+S+LK +VLDEADEML Sbjct: 56 VNVVALYGGQRYDVQLRALRQGPQVVVGTPGRLLDHLKRGTLNLSNLKGLVLDEADEMLR 115 Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222 +GF +D+E IL P + + +FSAT+ AI + + + K+ V I S DI Sbjct: 116 MGFIEDVENILAQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQV 175 Query: 223 AVLVALSDRDN-AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281 V R N A+V L AI+F T+ + + L + AL+G+++Q Sbjct: 176 YWKVGGGYRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQA 235 Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341 R L+ ++DGR + IATDVAARG+D+ + LV++ ++ + E+ +HR GRTGRAGR Sbjct: 236 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295 Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 G ++ + +R + + R +++ P+ + + ER + ++ + Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVELPNAQLLSERRLAKFAAK--VSQQLESSDL 353 Query: 402 KMVDVLLAKHDPEK------IAAGFLRI---HRAGLCAPE 432 M LLAK PE+ +AA L++ R + PE Sbjct: 354 DMYRALLAKLQPEEEFDIETLAAALLKMAQGERPLILPPE 393 >gi|300692366|ref|YP_003753361.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia solanacearum PSI07] gi|299079426|emb|CBJ52099.2| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia solanacearum PSI07] Length = 471 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 191/339 (56%), Gaps = 9/339 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ L + GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A Sbjct: 23 PAVLAN-LVQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR-- 79 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF A+ + PTRELA QV +E+ L A+ V V GG + + L++GAH Sbjct: 80 RFDVQ----AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAH 135 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L + LK +VLDEAD MLD+GF DDI ++ P +R+ L+FS Sbjct: 136 VVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLFS 195 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I L++ ++ V + E S I R V +R +A+ +L+++ + Sbjct: 196 ATYPDGIAKLSRQILRNPKEVKL-EERHDDSKIRQRFYEVTDDERLHAVGLLLKHYRPVS 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 + FC+T+ VL F +AL GEL Q+ER L + V +ATDVAAR Sbjct: 255 TLAFCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAAR 314 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+D+ LE VI+ +++ +PE +HR GRTGRA + G ++ Sbjct: 315 GLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWAL 353 >gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense Az-Fu1] Length = 397 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 209/370 (56%), Gaps = 10/370 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q ++L + GY T +QE + L KD++ AQTG+GKT AFG+ + ++ + Sbjct: 11 ISQETLKSLEDLGYSKPTEIQEKAIPAVLSGKDLVAQAQTGTGKTAAFGIPIVESVNTKQ 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL + PTRELA+QV +E++ L V V GG S+ + L+ G Sbjct: 71 KKIQ------ALVLVPTRELAIQVAKEIKDLGKNKKVFVLSVYGGKSMKHQIDFLKKGND 124 Query: 127 IV-VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V VGTPGR+ D + L + ++K VLDEAD ML++GF +DIE I+ P+ R+ L+F Sbjct: 125 VVIVGTPGRVKDLLERGFLKLDNVKMFVLDEADRMLEMGFIEDIEDIMSYLPEDRQNLLF 184 Query: 186 SATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT+ I LA+ + +D + + + I V ++ N ++ +L + A Sbjct: 185 SATMPKEILELAQEFLNEDYQTIKVKPDEITVEKIKQIIYRVDPKNKFNKLIEVLSQNQA 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F T+ + ++ L++ F V A+ G+ SQ++R L R G+ ++ +ATDVA Sbjct: 245 EKTIIFTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRETVLHNFRTGKLKILVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--E 362 ARG+D+ +ELVI+ L N E+ +HR GRTGRAG++G ++ + + + +++ + + Sbjct: 305 ARGLDIKGVELVINYGLPKNAESYVHRIGRTGRAGKEGTAISIPTPSEDKYLQQILQKTK 364 Query: 363 ANVSVVWEPA 372 AN+ V+ E + Sbjct: 365 ANIEVINEAS 374 >gi|228942602|ref|ZP_04105134.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228982168|ref|ZP_04142457.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407] gi|228777520|gb|EEM25798.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407] gi|228817028|gb|EEM63121.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943251|gb|AEA19147.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar chinensis CT-43] Length = 481 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPIKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLNRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAIRERDA 383 S E + + A Sbjct: 372 SKEEVMKEKA 381 >gi|149179168|ref|ZP_01857736.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797] gi|148841986|gb|EDL56381.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797] Length = 445 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 190/347 (54%), Gaps = 3/347 (0%) Query: 1 MKIFENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F+ + + + +AL E Y T +Q + L +DVL AQTG+GKT A L + Sbjct: 1 MNTFQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPI 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + L +N R S PLAL +APTRELA+Q+G + + + GGV + Sbjct: 61 LNQL-GKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIYGGVGQGNQV 119 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ GAHI+V TPGRL D + + ++ L+ VLDEAD MLD+GF D++ I+ P Sbjct: 120 KALKRGAHILVATPGRLLDLMNQGHIKLNQLEVFVLDEADRMLDMGFLPDLKRIITQLPT 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L FSAT++P IT LA + V VN+ + I + + V + + + I Sbjct: 180 QRQSLFFSATLAPKITELAHSLLSKPVTVNVTPKTTSVEKIQQQLMFVERNFKQPLLQKI 239 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + A+VF T+ + + ++ L F+ A+ G SQ R AL+ R + +V Sbjct: 240 LGGDEVERALVFTKTKRTANTLSQRLVRSGFKATAIHGNKSQGARQQALEAFRRKQVQVL 299 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARGID+ + VI+ +L PE +HR GRTGRAG G+++ Sbjct: 300 VATDVAARGIDIDGITHVINFDLPVEPEAYVHRIGRTGRAGANGIAI 346 >gi|304314413|ref|YP_003849560.1| ATP-dependent RNA helicase [Methanothermobacter marburgensis str. Marburg] gi|302587872|gb|ADL58247.1| predicted ATP-dependent RNA helicase [Methanothermobacter marburgensis str. Marburg] Length = 425 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 195/370 (52%), Gaps = 11/370 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL + G+ T +Q L L DV+ AQTG+GKT AF + L L Sbjct: 15 INRALDDMGFEGTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFTIPLLENL-------E 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P P AL I PTREL +QV E+ + V V GG + + +L+ G H++V Sbjct: 68 PERVPQALVICPTRELCLQVTDEIRRIGKYLNVRVLAVYGGQGIGGQIAELRRGVHVIVA 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI +++ + VVLDEADEML++GF DDIE IL P++R+ ++FSATIS Sbjct: 128 TPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFSATIS 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + +A+ Y + I ++HS ID D+ + IL + + ++ Sbjct: 188 KPVLRIAERYMRSP---QILRVEKKHSPRIDEFYFKTREEDKVELLDWILTSNDIRMGLI 244 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V R K L+ + V + G+LSQ +R ++ R GR + IATDVAARGI Sbjct: 245 FCNTKRRVQRLRKQLSRMGYSVDEIHGDLSQSKRERVMERFRKGRFNLLIATDVAARGIH 304 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 +PD+E+V++ +L E +HR GRTGRAG G S ++ R R+ + Sbjct: 305 VPDVEVVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGREVHRLRRIQSFTGKRIKK 364 Query: 370 EPAPSVEAIR 379 PS + IR Sbjct: 365 SNMPSPQEIR 374 >gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11] gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11] Length = 480 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 192/359 (53%), Gaps = 6/359 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY + T++Q + L +DVL AQTG+GKT +F L + + L R A Sbjct: 15 AVDAAGYKDPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPMLTLLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV E + VA+ IGGVS + + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVQENFERYGTNHKLNVALLIGGVSFAEQDKKLDRGTDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L + ++ +V+DEAD MLD+GF DIE I P R+ L FSAT+ P I Sbjct: 132 RLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---KNAIVF 250 L + + ++ R+ +A + ++ + D D + GA +NAIVF Sbjct: 192 QRLTETFLQNPARIEVAPTSSTAENVTQQLKAAGGKDYDKRVALRELLEGAEDLQNAIVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + +S + L H + V AL G++ Q+ R L+ R G ++ +A+DVAARG+D+ Sbjct: 252 CNRKRDISTLFRSLERHEYNVGALHGDMDQRTRMMMLENFRKGAIKLLVASDVAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 P++ V + ++ N E+ +HR GRTGRAGR G + ++ ++ Q+ + N S+ W Sbjct: 312 PEVSHVFNYDVPINAEDYVHRIGRTGRAGRSGTAYTLVTESDQKYLRAIEELTNQSIEW 370 >gi|254428186|ref|ZP_05041893.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881] gi|196194355|gb|EDX89314.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881] Length = 457 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 184/339 (54%), Gaps = 10/339 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDRF 69 A++ERGY + +Q + L +DV+ +AQTG+GKT F L L L A N++ Sbjct: 15 AVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLERLRTGTPARNNQV 74 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA QV + + +V GGV ++ + + L+ G ++V Sbjct: 75 R------ALVLTPTRELAAQVAESVSTYGKNLPLTSSVVFGGVKINPQMQRLRGGCDVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + + HL+ ++LDEAD MLD+GF DI IL P KR+ LMFSAT Sbjct: 129 ATPGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILSKLPPKRQNLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 SP I LAK D V V+I+ N + V + + ++++ HG +V Sbjct: 189 SPEIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPVDKKRKPALLTHLIQEHGWFQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ K L + + A+ G SQ R+ AL ++G+ R +ATD+AARG+D Sbjct: 249 FSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKNGKVRALVATDIAARGLD 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L V++ +L + PE+ +HR GRTGRAG G ++ ++ Sbjct: 309 IEQLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLV 347 >gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2] gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2] Length = 516 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 210/389 (53%), Gaps = 27/389 (6%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77 G+ T +Q + L KDV+ AQTG+GKT AFG+ L ++ +P S + A Sbjct: 2 GFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLV-------EKINPESPNIQA 54 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + IAPTRELA+QV EL + V GG + R+ R L+ HI+VGTPGRL D Sbjct: 55 IVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLD 114 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI + + + + VVLDEADEML++GF +DIE IL + P + + L+FSAT+ I +A Sbjct: 115 HINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIA 174 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + + + V + ++ S+I + V + + + +L + AIVF T+ V Sbjct: 175 ERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRV 234 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ L + + G+L+Q +R AL+ + G V +ATDVAARG+D+ + V Sbjct: 235 DELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVY 294 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVE 376 + ++ +PE+ +HR GRTGRAG+ GM++ F+ P R + + R ++E Sbjct: 295 NFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKDMLR------------AIE 337 Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVD 405 +R R ++ P ++I+G ++ VD Sbjct: 338 QTTKRKMDR-MKAPTLDEAIEGQQQVTVD 365 >gi|52145260|ref|YP_086717.1| ATP-dependent RNA helicase [Bacillus cereus E33L] gi|51978729|gb|AAU20279.1| ATP-dependent RNA helicase [Bacillus cereus E33L] Length = 481 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|215426565|ref|ZP_03424484.1| hypothetical protein MtubT9_09292 [Mycobacterium tuberculosis T92] gi|219557147|ref|ZP_03536223.1| hypothetical protein MtubT1_07530 [Mycobacterium tuberculosis T17] gi|260200303|ref|ZP_05767794.1| hypothetical protein MtubT4_09273 [Mycobacterium tuberculosis T46] gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46] gi|289569259|ref|ZP_06449486.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17] gi|289749796|ref|ZP_06509174.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92] gi|289415608|gb|EFD12848.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46] gi|289543013|gb|EFD46661.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17] gi|289690383|gb|EFD57812.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92] Length = 563 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 170/539 (31%), Positives = 276/539 (51%), Gaps = 54/539 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ + GY + T++Q A + + DV+ AQTG+GKT AF + + S + + Sbjct: 22 PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79 Query: 68 RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P AL + PTRELA+QV GR +L + + V GG S + L+ Sbjct: 80 -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ DH+ L++S + +VLDEADEML +GF DD+E IL +P+ +++ Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ PAI L+ Y D V ++ +I + VA + +A+ +L Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEP 249 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ + + L F A+SG++ Q +R + +RDG + +ATDV Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360 AARG+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ + + E+ Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412 R+ ++ P+VE + + QR+ + F DSI G E +++V +HD Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRVAK---FADSITNALGGPGIELFRRLVKEYEREHD 420 Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 IAA R G L AP+ P+S + R R + R + + Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526 + ++VG + K ++ + G++R G IR+ PD + VE+ A L R T+K Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526 >gi|160940589|ref|ZP_02087933.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC BAA-613] gi|158436549|gb|EDP14316.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC BAA-613] Length = 490 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 198/364 (54%), Gaps = 8/364 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E L+ GY + T VQE +L L ++V+V +QTG+GKT AF + + ++ E + Sbjct: 22 ITETLALLGYEHPTRVQEEVLPHVLAGRNVVVRSQTGTGKTAAFAIPVCEQIVWEEN--- 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + P+RELAVQV +E+ + K + V GG + ++ + L+ HIVVG Sbjct: 79 ---LPQALVLEPSRELAVQVSQEIFRIGRKKRLKVPAVFGGFPIDKQIQTLRQKTHIVVG 135 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R L ++ ++ +V+DEAD MLD+GF D++ I+ P+KR+ L+FSAT+ Sbjct: 136 TPGRVMDHVRRGSLKLTGVRYLVIDEADLMLDMGFMDEVRQIVGLLPEKRQTLLFSATLD 195 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + LA+ KDAV V + E I VA + A +L + A++F Sbjct: 196 EDVKNLAEETVKDAVSVFLEQEGETPLPIRQSVYGVAQDQKYTAFKRVLMKENPERAMIF 255 Query: 251 CSTRASVS-RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 C TR V F K+ + +F + G++ Q+ER + R G R IATDVAARGID Sbjct: 256 CGTREMVQVLFQKLRRDRIF-CGMIHGDMEQKERLKNVDAFRRGGFRYLIATDVAARGID 314 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 D+ LV++ + E +HR GRTGR G+ G + ++ ++ R + V + Sbjct: 315 FEDVGLVVNYDFPMGRETYVHRIGRTGRNGKAGRAASLVTEDEIRTLHKAEAYVGVPLPV 374 Query: 370 EPAP 373 P P Sbjct: 375 LPCP 378 >gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. subtilis str. 168] gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis] gi|2632758|emb|CAB12265.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp. subtilis str. 168] Length = 511 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/404 (32%), Positives = 221/404 (54%), Gaps = 27/404 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +A++ G+ T +Q + L KDV+ AQTG+GKT AFG+ L Sbjct: 26 NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV------ 79 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ +P S + A+ IAPTRELA+QV EL + V GG + R+ R L+ Sbjct: 80 -EKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 138 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +I+VGTPGRL DHI + + ++++ VV+DEADEML++GF DDIE IL + P + + L+ Sbjct: 139 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 198 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A+ + + V + ++ S+I + V + + + +L Sbjct: 199 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 258 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF T+ V + L + + G+L+Q +R AL+ ++G V +ATDVA Sbjct: 259 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVA 318 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARG+D+ + V + ++ +PE+ +HR GRTGRAG+ GM++ F+ P R + + R Sbjct: 319 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR-- 371 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 ++E +R R +++P ++++G ++ V+ L Sbjct: 372 ----------AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVERL 404 >gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM 15868] gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM 15868] gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer RA-YM] gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer RA-GD] Length = 371 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/336 (37%), Positives = 190/336 (56%), Gaps = 5/336 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+S+ GY T++QE + L +D++ AQTG+GKT AF + L +L+E + Sbjct: 12 ILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLLQ-ILSETPK-- 68 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129 + AL + PTRELA+Q+ +E Y+K + + I GGV ++ R L G I++ Sbjct: 69 KGKSVRALILTPTRELAIQIQENIEQ-YSKFLNIKHLSIFGGVPQGKQERALNQGVDILI 127 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D ++ L++S ++ +VLDEAD MLD+GF +D++ IL PKKR+ L FSAT+ Sbjct: 128 ATPGRLLDLMQQGLLSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQTLFFSATM 187 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 +I A+ + V + + I+ V +D+ N ++NIL+ +++ Sbjct: 188 PNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTNLLINILKDTSELRSLI 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ R K L A+ G SQ R AL+ +D R V IATD+AARGID Sbjct: 248 FTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLIATDIAARGID 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L VI+ EL + PE +HR GRTGRAG G ++ Sbjct: 308 IDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAI 343 >gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968] gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A) [Legionella longbeachae NSW150] gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968] gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A) [Legionella longbeachae NSW150] Length = 569 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/347 (34%), Positives = 192/347 (55%), Gaps = 8/347 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N + AL + + + +Q + L +D + AQTG+GKT AF L + L Sbjct: 12 NFSDALNRALEDMKFTTPSPIQAQTIPLLLEGRDAIALAQTGTGKTAAFALPILQNL--- 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124 S AL +APTRELA+QV + E L A + + VAV GG R+ + L+ G Sbjct: 69 ---SSSVHGTQALILAPTRELAIQVAEQFELLSANQRSITVAVLCGGQEYGRQLKQLRAG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A IVVGTPGR+ DH+ L + +L+ +LDEADEML +GF +DIE I+ P+K+++ + Sbjct: 126 AQIVVGTPGRILDHLDKGTLLLDNLRTFILDEADEMLRMGFIEDIETIMSKLPEKKQIGL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A Y + + I +E I+ R + + + +A++ +L Sbjct: 186 FSATMPHRIRQIANTYLHNPAAIEIRAETATVKSIEQRFLFASGHQKYDALLRVLAVEDY 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T++S ++L + + +A+ G+++Q R + R G + +ATDVA Sbjct: 246 QGVIVFVRTKSSTEEVAEILQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 ARG+D+ + VI+ +L + E +HR GRTGRAGR G+++ FV P+ Sbjct: 306 ARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPK 352 >gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia] Length = 451 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/391 (31%), Positives = 216/391 (55%), Gaps = 19/391 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + A + GY T +Q+ L L++KD++ A+TGSGKT+AFGL + LLA + Sbjct: 23 LSSACEKLGYKIPTPIQQQSLPYTLQKKDIIGLAETGSGKTLAFGLPILQHLLANPQPY- 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL ++PTREL VQ+ + + A + V +GG+ + + L HI++G Sbjct: 82 -----YALILSPTRELCVQIQEHFQAIGASIALKSVVILGGMDPLAQAKALAQKPHIIIG 136 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPG++ H+ KG N+ LK +VLDEAD++L++ F +I ILD PK+R +FSAT+ Sbjct: 137 TPGKILYHLENTKGFNLKQLKFLVLDEADKLLNMDFEREINAILDIIPKERNTYLFSATM 196 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + ++ L + KD V++ ++S+ + S + + V ++ +V +L +IV Sbjct: 197 TNKVSKLQRASLKDPVKIEVSSKYQTVSTLQQNYLFVPDKYKETYLVYLLNELAGLTSIV 256 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +T + T +L FQ +A+ G++SQ +R ++ + + + IATDVA+RG+D Sbjct: 257 FVATCQMAIKITLLLRNLGFQAIAIHGQMSQAKRLSSFNKFKSKESNLLIATDVASRGLD 316 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERL------- 359 +P ++LV++ ++ N + +HR GRT RAG+ G ++ ++ Q M ++ E+L Sbjct: 317 IPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQYDVEMYQKIEQLIEKELSQ 376 Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQ 388 E++V V +E I ++ + +L+ Sbjct: 377 YPLEESDVMVFYERVQEANRIATQELKDLLE 407 >gi|322804966|emb|CBZ02525.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065] Length = 425 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 190/345 (55%), Gaps = 2/345 (0%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I +AL E GY T +QE + L KD++ AQTG+GKT AF + + Sbjct: 2 LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L + + AL +APTRELA+Q+G E + AV GGVS + + + Sbjct: 62 NLSKDKKANKNPRSIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKV 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G I++ TPGR+ D K +++ +++ VLDEAD MLD+G D++ I+ PK R Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKIR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ IT L + KD +RV + + I V + + ++L+ Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++A+VF +T+ + K L E + A+ G SQ R AL ++G+ RV +A Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TD+AARGID+ +L V + L PE +HR GRTGRAG KG+++ Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346 >gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium dendrobatidis JAM81] Length = 445 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 191/345 (55%), Gaps = 8/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP++I EA + G+ + +Q A + L +D++ AQTGSGKT AF L + TL A Sbjct: 19 IPELI-EACTTLGFKKPSDIQCASIPVALTGRDIIGLAQTGSGKTAAFALPILQTLFANP 77 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A IAPTRELA Q+ + E L + GV AV +GG+ + + L H Sbjct: 78 QHL------YACVIAPTRELAFQISEQFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPH 131 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH+ KG N+ HLK +V+DEAD +LDL F +IE +L P++R +F Sbjct: 132 VIICTPGRLVDHLENTKGFNLKHLKYLVMDEADRLLDLDFGAEIEKVLKVIPRERNTYLF 191 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + + V+V +A++ + ++ + +L + Sbjct: 192 SATMTSKVEKLQRASLVNPVKVEVATKYSTVDTLLQYYTFFPYKQKECYLTYLLNELSGQ 251 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF T AS + +L F+ V L G+L+Q +R AL + G + IATDVA+ Sbjct: 252 TCIVFTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILIATDVAS 311 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++VI+ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 312 RGLDIPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQ 356 >gi|90022676|ref|YP_528503.1| ATP-dependent RNA helicase DeaD [Saccharophagus degradans 2-40] gi|89952276|gb|ABD82291.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40] Length = 595 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 194/346 (56%), Gaps = 10/346 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 I +AL++ GY + +Q + L +D+L AQTG+GKT AF L + + L L++ Sbjct: 17 ILKALTDVGYETPSPIQAKSIPELLAGRDILGQAQTGTGKTAAFALPILNNLDLSQK--- 73 Query: 70 SPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AP L +APTRELA+QV + + + G + GG ++ R L+ G H++ Sbjct: 74 ----APQVLVLAPTRELAIQVAEAFQSYAHHLPGFHILPIYGGQGYDQQIRALKRGVHVI 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+R L + LK +VLDEADEML +GF DD+E++L +P R++ +FSAT Sbjct: 130 VGTPGRVMDHMRKGTLKLDQLKVLVLDEADEMLRMGFIDDVEWVLTQTPPTRQIALFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I +A Y D + I + + I R V+ + +A IL I Sbjct: 190 MPKEIAKVANKYLNDPALIKIEVKTQTADTIRQRYWGVSGHHKLDATTRILEAEEFDAMI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + LA + AL+G++SQ R ++ ++ G+ + +ATDVAARG+ Sbjct: 250 IFVRTKTTTIELAEKLAARGYSSAALNGDISQNLRERTVEKLKKGQIDILVATDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 D+ + V++ ++ + E +HR GRTGRAGR G ++ FV P+ M+ Sbjct: 310 DVDRISHVLNYDIPYDSEAYVHRIGRTGRAGRSGEAILFVAPREMR 355 >gi|300783976|ref|YP_003764267.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] gi|299793490|gb|ADJ43865.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] Length = 534 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 196/362 (54%), Gaps = 9/362 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + ALSE G + +Q A + L +DVL AQTGSGKT+AFGLA+ + L Sbjct: 50 GLPEPLLRALSEAGINSPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAMLARLADG 109 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P AL + PTRELA+QV L L G+ +GG++ R+ L G Sbjct: 110 KAR---PKRPRALILVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMAFARQADALSRGV 166 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH+R ++ + LDEAD+M D+GF + I+D +P+ + L+F Sbjct: 167 DLLIATPGRLSDHVRQGTAHLGDCNFIALDEADQMADMGFMPQVREIMDLTPQGGQRLLF 226 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L K Y D V ++A + +D+ + V+ D+ + I I GA+ Sbjct: 227 SATLDGDVNRLVKQYLSDPVTHSVAPSTASVTTMDHHVLQVSHQDKQDVITQI----GAR 282 Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + I+F T+ V R + L E AL G +Q +R+ L ++G V +ATDV Sbjct: 283 DGRTIMFVRTKHHVDRLAERLREQGVNAAALHGGKTQGQRNRVLADFKEGHTPVLVATDV 342 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGI + D+ LV+H + +++ ++ LHR+GRT RAG G+ V V + +R RL A Sbjct: 343 AARGIHVDDISLVLHVDPAADHKDYLHRAGRTARAGASGVVVTVATHDQRRMVRRLTDRA 402 Query: 364 NV 365 V Sbjct: 403 GV 404 >gi|186683738|ref|YP_001866934.1| DEAD/DEAH box helicase domain-containing protein [Nostoc punctiforme PCC 73102] gi|186466190|gb|ACC81991.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC 73102] Length = 443 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/341 (37%), Positives = 188/341 (55%), Gaps = 3/341 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I A++ERGY T +Q + L D+L AQTG+GKT +F L L L +E + Sbjct: 12 IIRAVTERGYTEPTPIQRQAIPAVLSGSDLLAGAQTGTGKTASFTLPLLHRLSSEKNVKV 71 Query: 69 FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 S P+ AL + PTRELA QV + + V GGV ++ +++ L+N I Sbjct: 72 TSNGYRPIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVGINLQKQRLKNRVDI 131 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL DH++ LN+SH++ +VLDEAD MLD+GF DI IL PK+R+ L+F A Sbjct: 132 LVATPGRLLDHVQQGTLNLSHIEVLVLDEADRMLDMGFIHDIRRILAILPKQRQNLLFFA 191 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LA + + +A N I + V + + +++R Sbjct: 192 TFSDKIKALAAGLLNNPKMIEVARRNVTAETIAQKIYQVDRDKKRQLLAHLIRRDNWYQV 251 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ R K L E Q +A+ G SQ R+NAL ++G +V +ATD+AARG Sbjct: 252 LVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPVRTNALAKFKNGSLQVLVATDIAARG 311 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+ +L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 312 LDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLV 352 >gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805] gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805] Length = 607 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 203/374 (54%), Gaps = 7/374 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L E+GY + +Q+A + +D++ AQTG+GKT AF L L L +S Sbjct: 71 TLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLEGR------SS 124 Query: 74 APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L +APTRELA+QV + + + V GG + L+ G +VVGTP Sbjct: 125 KPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHTLKRGVDVVVGTP 184 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R L+ + L+++VLDEADEML +GF DD+E+ILD P++R++++FSAT+ Sbjct: 185 GRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPNE 244 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L+K Y ++ + I +++R+ I R++ + S + A+ +L + I+F Sbjct: 245 IRRLSKRYLQEPAEITIKTKDREAKRIRQRSITMQNSHKIEALNRVLEAVTGEGVIIFAR 304 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+A + L V L+G++ Q +R + +R G + +ATDVAARG+D+ Sbjct: 305 TKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVATDVAARGLDVDR 364 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LVI+ ++ + E +HR GRTGRAGR G ++ + +R L R N S+ Sbjct: 365 IGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLERAVNQSIEPMDI 424 Query: 373 PSVEAIRERDAQRI 386 PS I + R+ Sbjct: 425 PSNAEINQSRLDRL 438 >gi|255319837|ref|ZP_05361042.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82] gi|262380369|ref|ZP_06073523.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255303156|gb|EET82368.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82] gi|262297815|gb|EEY85730.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 618 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 199/345 (57%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL++ G+ T+VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 12 ESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALADQDTF 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L +R + P L I+PTRELA QV ++ + + GV +A +GG+ ++ + L Sbjct: 72 LPFKERMRAVTQPNILVISPTRELAQQVCQDAIALVRHMKGVRIAAIMGGMPFGKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + + + + A+++DEAD MLDLGF +D+E I + + +++ Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAISELALNRKQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ KD +R+ I + + ++DI + + + L Sbjct: 191 TLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLE 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGKAI 355 >gi|332521202|ref|ZP_08397660.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043295|gb|EGI79492.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 411 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 117/331 (35%), Positives = 187/331 (56%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY N T +QE + L +KDV+ SAQTG+GKT AF L + L + D Sbjct: 15 AIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPILQLLYDKQDAAKNQK 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL I+PTRELA+Q+ + T + V GG S+ ++ L+ G I++ TPG Sbjct: 75 KVRALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKDVLRKGVDILIATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + +N+ +++ +VLDEAD MLD+GF DD++ I P ++++L+FSAT+ + Sbjct: 135 RLLDLHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPAEKQILLFSATMPYKV 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK + RV ++ + ++I+ V + +++LR I+F T Sbjct: 195 EQLAKTILNNPKRVEVSQNSSTSTNINQALYYVPKPKKIELCLHLLRNTVKGKIIIFRRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + K L + ++ ++ G+ SQ R AL + + IATDVAARGID+ ++ Sbjct: 255 KYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEVNILIATDVAARGIDIENV 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 + VI+ ++ + PE +HR GRTGRAG GM+ Sbjct: 315 DAVINFDMPNVPETYVHRIGRTGRAGNTGMA 345 >gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp. PCC 7822] gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822] Length = 482 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 234/463 (50%), Gaps = 24/463 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ N T +Q+ + L DV+ +QTG+GKT A+ L L L DR S + Sbjct: 16 QHLESIGFTNPTDIQQKAIPLLLEGHDVVGQSQTGTGKTAAYSLPL----LERIDRHSRS 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV + ++ + + GG S+ R+ R L+ G IVVGTP Sbjct: 72 VQ--ALILTPTRELAQQVAQAIKDFVDDRRLFILTVYGGQSIDRQIRSLERGVQIVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + K L++ L+ VLDEADEML +GF DD++ IL +P R+ FSAT+ P Sbjct: 130 GRVIDLLERKKLSLDELQMAVLDEADEMLSMGFIDDVKKILQQTPSTRQTACFSATMPPE 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251 I L + K V V+ ID +V + A+ IL ++AI+F Sbjct: 190 IKRLIDQFLKSPVVVSATQHEATPERIDQHIYMVPRGWSKLKALQPILEIEDPESAIIFV 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + T L E V G LSQ +R +Q R+G+ ++ +ATD+AARG+D+ Sbjct: 250 RTKQTATELTGKLQESGHHVDEYHGNLSQAQRERLVQRFREGKIKLVVATDIAARGLDVE 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAE-RLFREANVSV 367 DL VI+ +L N E +HR GRTGRAG+ G ++ +I + M R+ E R+ +VS Sbjct: 310 DLSHVINFDLPDNTETYIHRIGRTGRAGKTGTAISLIEPIDRRMLRQIEHRVGHRLDVSQ 369 Query: 368 VWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426 + P S VEA R Q +++ L + + +V L A++DP IAA L++ Sbjct: 370 L--PDRSLVEAKRLSKLQTQVKETLAGERM-ASFLPLVRELSAEYDPLAIAAAALQMVYD 426 Query: 427 GLC---------APEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460 C P+E P ++ + R+ + K R Sbjct: 427 QDCPNWMKTDWEVPKETAPKPMLKQQRRYNKSGKPSKFEKSGR 469 >gi|323706324|ref|ZP_08117890.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534376|gb|EGB24161.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 513 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 207/371 (55%), Gaps = 7/371 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ + G+ + +Q ++ L DV+ A+TG+GKT+A+G + + + ND Sbjct: 12 ILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPIINNF-SSND--- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA+QV EL + + V + GGV + R+ + ++ G IVVG Sbjct: 68 --GKVFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVG 125 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D I+ L++ ++ +V+DEADEM+D+GF DDI+ I++ + K+R+ +MFSAT+ Sbjct: 126 TPGRVLDLIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKERQTMMFSATMP 185 Query: 191 PAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LAK Y K DA ++I + S + + V +R ++ IL + I+ Sbjct: 186 DEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEPSSTII 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V T+ + + V + G++SQ +R N L+ ++G +ATDVAARGID Sbjct: 246 FCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVATDVAARGID 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + ++ VI+ L + E+ +HR GRTGRA R G++ ++ +R+ + + Sbjct: 306 IENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIEKATRCKIKR 365 Query: 370 EPAPSVEAIRE 380 + P+V+ I E Sbjct: 366 KELPTVDDILE 376 >gi|260574781|ref|ZP_05842784.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] gi|259023198|gb|EEW26491.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] Length = 537 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 122/349 (34%), Positives = 195/349 (55%), Gaps = 13/349 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L +DVL AQTG+GKT +F L + TLL + Sbjct: 11 PRVL-QAVLEAGYETPTPIQAQAIPHALAGRDVLGIAQTGTGKTASFVLPMI-TLLGQGR 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV E + + A+ IGGVS + + + G + Sbjct: 69 --AKARMPRSLVLCPTRELAAQVAENFETYAKYSKLTKALLIGGVSFGEQDKLIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ +SA Sbjct: 127 LIATPGRLLDHHERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTFFYSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-------ILR 240 T++P I + + +AV++ +A + I+ + + + +D + + ++R Sbjct: 187 TMAPEIERITNTFLSNAVKIEVARQATSSETIEQALIQITPTRKDRSFADKRAVLRALIR 246 Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G NAI+FC+ + V +K L +H F + G+L Q R+ L RDG + Sbjct: 247 AEGEACTNAIIFCNRKMDVDVVSKSLKQHGFNASPIHGDLDQSVRTRTLDGFRDGTVHLL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +A+DVAARG+D+P + V + ++ S+PE+ +HR GRTGRAGRKG + + Sbjct: 307 VASDVAARGLDIPAVSHVFNFDVPSHPEDYVHRIGRTGRAGRKGKAFTI 355 >gi|50086240|ref|YP_047750.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1] gi|49532216|emb|CAG69928.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1] Length = 640 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/379 (35%), Positives = 213/379 (56%), Gaps = 15/379 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL + G+ + T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 16 ESLQQALQDLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLHSLAGQDTF 75 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L +R + P L I+PTRELA QV ++ + + GV +A +GG+ ++ + L Sbjct: 76 LPFKERMRAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGMPFAKQIQQL 135 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + + + + A+++DEAD MLDLGF +D+E I + + +++ Sbjct: 136 K-GAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAISELAANRKQ 194 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ +D +R+ I + + ++DI + + + L Sbjct: 195 TLMFSATFADRIIRLAECMMQDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLS 254 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+G+A++ +A Sbjct: 255 DESMDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGKAKILVA 314 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAER 358 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ + + + RA Sbjct: 315 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRERGKIRALE 374 Query: 359 LFREANVSVV----WEPAP 373 + EA +SV EP+P Sbjct: 375 DYLEARLSVSEIEGLEPSP 393 >gi|150391088|ref|YP_001321137.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950950|gb|ABR49478.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens QYMF] Length = 549 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 191/344 (55%), Gaps = 10/344 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I L++ T VQ + P L ++DV+ AQTG+GKT+AF L + + E Sbjct: 10 ISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILERVNVEK 69 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 AL I PTRELA+Q+ E + L G+ + GG V ++ R L+ H Sbjct: 70 PTIQ------ALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKLKGSIH 123 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++GTPGRL DH+R K +N+ L +VLDEAD+ML +GF D+E I+ PK+R+ + FS Sbjct: 124 IIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNMFFS 183 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGA 244 AT+ + TLA+ Y KD V++ + S+ +I R V++ +DR + + + + Sbjct: 184 ATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEI--RQVVIETTDRGKQDLLCQLFDEYNP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+FC T+ + L + L G+L+Q +R ++ + + + +ATDVA Sbjct: 242 FMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARG+D+ + + + ++ + E+ +HR GRTGRAG GM++ + Sbjct: 302 ARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFM 345 >gi|262401852|ref|ZP_06078417.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586] gi|262351824|gb|EEZ00955.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586] Length = 460 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 213/367 (58%), Gaps = 12/367 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ ++T +Q L L +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 R AL + PTRELA QV ++ L +T + V GG+ + + L++GA Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTL-GRTIHNIKVLTLCGGMPMGPQIGSLEHGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+F Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT +I +A++ ++A+ + +A+ + S Y + + RD A+ +L +H Sbjct: 185 SATYPASIEQVAQSVTRNAMMIKVAATHDTSSIRQYFYNVDGSTARDEALETLLLHHQPT 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAA Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ ++ Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364 Query: 366 SVVWEPA 372 ++ EP+ Sbjct: 365 AI--EPS 369 >gi|261211120|ref|ZP_05925409.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341] gi|260839621|gb|EEX66232.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341] Length = 460 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/372 (34%), Positives = 211/372 (56%), Gaps = 10/372 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ ++T +Q L L +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 R AL + PTRELA QV ++ L +T + V GG+ + + L++GA Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTL-GRTIHNIKVLTLCGGMPMGPQIGSLEHGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+F Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT +I +A++ ++A+ + + + + S Y + + RD A+ +L +H Sbjct: 185 SATYPASIEQIAQSVTRNAMMIKVEATHDTSSIRQYFYKVDGSAARDEALETLLLHHQPT 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAA Sbjct: 245 SSVVFCNTKREVKNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ ++ Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364 Query: 366 SVVWEPAPSVEA 377 +V P A Sbjct: 365 EIVPSSLPQPAA 376 >gi|296130315|ref|YP_003637565.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] gi|296022130|gb|ADG75366.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] Length = 598 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 190/355 (53%), Gaps = 14/355 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ AL+ G +Q L L D++ A+TG+GKT+ FG+ L ++ Sbjct: 53 FDVRPEIVA-ALAAAGITQPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLHRVI 111 Query: 64 AEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 A DR P AL + PTRELAVQV +L V + GG + + Sbjct: 112 APGEDGYDRLPAPGEPQALVVVPTRELAVQVAGDLAMASTGRKVRIVQVYGGRAYEPQVE 171 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 LQ GA +VVGTPGR+ D + + L + H VVLDEADEMLDLGF D+E +L ++P Sbjct: 172 ALQRGADVVVGTPGRMIDLLNQRHLRLKHATEVVLDEADEMLDLGFLPDVEKLLAATPPN 231 Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQH----SDIDYRAVLVALSDRDN 233 R ++FSAT+ A+ +A+ Y Q +R + + Q + YRA + D+ Sbjct: 232 RHTMLFSATMPGAVVAMARRYMSQPTHIRASAPDDEGQTVKNIKQVAYRAHAL---DKVE 288 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + IL+ G IVF T+ + ++ L E F A+ G+L Q R AL+ R G Sbjct: 289 LLARILQARGRGLTIVFARTKRTAAKVADELVERGFAAGAIHGDLGQGAREQALRAFRHG 348 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V +ATDVAARGID+ D+ V++ + + + LHR+GRTGRAG KG +V + Sbjct: 349 KVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFV 403 >gi|149372587|ref|ZP_01891699.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [unidentified eubacterium SCB49] gi|149354630|gb|EDM43194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [unidentified eubacterium SCB49] Length = 626 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 150/518 (28%), Positives = 262/518 (50%), Gaps = 32/518 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDV-LVS-AQTGSGKTVAFGLALASTLLAENDRFS 70 +A+++ G+ + VQE + P L E+D LV+ AQTG+GKT AFG + L + D S Sbjct: 15 QAITDMGFETPSEVQEQAI-PILLEEDTDLVALAQTGTGKTAAFGFPM----LQKIDVAS 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + L L+ PTREL +Q+ E++ Y K G+ V GG S+ + R ++ GA I+ Sbjct: 70 RTTQGLILS--PTRELCMQITNEMKS-YGKHMKGLNVVAIYGGASISDQARQIKKGAQII 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGR+ D I + ++IS ++ VLDEADEML++GF +DI IL SP+++ +FSAT Sbjct: 127 VATPGRMKDMISRRMIDISKIEYCVLDEADEMLNMGFHEDITEILSHSPQEKSTWLFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + ++AK + + + S+N ++ + LV DR A+ + + ++ Sbjct: 187 MPREVASIAKEFMYQPQEITVGSKNTGSENVTHEYYLVNARDRYQALKRLADANPEIFSV 246 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ + + L + + A+ G+LSQ +R ++ R + ++ +ATDVAARGI Sbjct: 247 VFCRTKRDTQKVAEQLIQDGYSAGAIHGDLSQNQRDIVMKQFRSRQIQMMVATDVAARGI 306 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ ++ VI+ +L E HRSGRTGRAG +G+S+ ++ ++ R+ + ++ Sbjct: 307 DVDNITHVINYQLPDEVETYTHRSGRTGRAGNQGISIVIVSKSEVRKIRSIEKKIQKKFE 366 Query: 369 WEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425 + PS I E+ + ++D D I+ ++ L E++ F + Sbjct: 367 VKEVPSGMEICEKQLMHLANNIKDTEINDDIEA-YLPAINESLEDFSKEELIKKFFSVEF 425 Query: 426 AGLC-APEEITPVSLVSGRDR-FRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483 + +++ G ++ +RDD+ GS+ F L+VG K Sbjct: 426 TRFYNYYNKAKDINVKPGHEKDYRDDT--------------GSTRFFLNVGEKDDFNWMS 471 Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 L +L + + + + V+ +F V DL+ Sbjct: 472 LKDLLKEVLNLGKDDVYKVDVKDSFSFFNVDEKHKDLV 509 >gi|119475471|ref|ZP_01615824.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] gi|119451674|gb|EAW32907.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] Length = 459 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 192/333 (57%), Gaps = 12/333 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPAS 73 L + GY +T +Q+ L L D++ A+TGSGKT AFG+ L + + N R F + Sbjct: 18 LQQLGYEKMTPIQQQSLPLVLAGSDIIAKAKTGSGKTAAFGIGLLTKI---NPRDFGTQT 74 Query: 74 APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + I PTREL+ QV E+ L Y + VV +C GG S+ + L++GAHIVVGT Sbjct: 75 ----MVICPTRELSTQVATEIRRLARYQQNIKVVVLC-GGQSIGPQIGSLEHGAHIVVGT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R K L++S L +VLDEAD MLD+GF DIE I+ P R+ L+FSAT Sbjct: 130 PGRIKDHLRKKTLSLSRLGILVLDEADRMLDMGFYSDIETIIHEMPDDRQTLLFSATYPD 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I TL+ ++Q+ V +++ S R + I + + +R + +L + ++A++FC Sbjct: 190 KIKTLSSSFQRSPVEISVESV-RGNEKIHQQLFICDKRERLAGLQRLLMNYPIESAVIFC 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T V L + A+ G+L Q++R L + + +ATDVAARG+D+ Sbjct: 249 NTIKLVKEVCDYLVDIGISAKAIHGDLEQRDRDQVLIQFANHSCSLLVATDVAARGLDIE 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 DL VI+ EL + +HR GRTGRAG++G++ Sbjct: 309 DLPAVINFELPREADVYIHRIGRTGRAGKEGLA 341 >gi|83942539|ref|ZP_00955000.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36] gi|83846632|gb|EAP84508.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36] Length = 433 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 116/355 (32%), Positives = 200/355 (56%), Gaps = 4/355 (1%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE +P+ + +AL+ G + T +Q+ + + +DV+ AQTG+GKT AFG+ L Sbjct: 1 MSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + +L R P + L +APTRELA Q+ L+ T + + +GG S++ + Sbjct: 61 VAQMLEREARPEPRTV-RGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQI 119 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + ++ G ++V TPGRL D + + + + +VLDEAD+MLD+GF D+ I PK Sbjct: 120 KRMERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPK 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT+ + +A +Y +R+ ++ + I +A +++ + ++ + Sbjct: 180 ERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIEL 239 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L H + A+VF T+ + K L + F+ ++ G SQ +R A++ + G V Sbjct: 240 LGKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVL 299 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++ F P M Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 354 >gi|304437212|ref|ZP_07397172.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369704|gb|EFM23369.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 426 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/393 (32%), Positives = 206/393 (52%), Gaps = 18/393 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 I + + L ++G T VQE + P +DV+ AQTG+GKT+A+ L L + Sbjct: 8 GISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLA----- 62 Query: 66 NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 R P +A AL IAPTRELA+Q+ R E L G+ V GG + R++ L+ Sbjct: 63 --RIKPQGAAAQALVIAPTRELAIQIERVAEPLAQPLGIGTVVIYGGADIERQKEKLRRS 120 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +V+GTPGRL DH+R L + + VVLDEADEML +GF +D+E +L ++ + ++ + Sbjct: 121 PQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLAL 180 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I L K + + + +A E + I+ + V+ D+ + + + Sbjct: 181 FSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCASINEEAP 240 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A+VFC+T+ LA+ + V ALSG+L+Q +RS L+ R + ++ ATD+A Sbjct: 241 YLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATDIA 300 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----- 359 ARG+D+ + V + +L + +HR GRTGRAG +G ++ ++ + + ++ Sbjct: 301 ARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRKMEAALK 360 Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQDP 390 R V PAP E DAQ+ P Sbjct: 361 ACLRRDVVKKKKRPAPPAG---EGDAQKKAHPP 390 >gi|75906865|ref|YP_321161.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC 29413] gi|75700590|gb|ABA20266.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC 29413] Length = 513 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 195/360 (54%), Gaps = 11/360 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L + G+ T++Q + L +DV+ +QTG+GKT AF L + +R P Sbjct: 16 EHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL-------ERLDPQ 68 Query: 73 S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A A+ + PTRELA+QV + +G+ GG S+ R+ L+ G HIVVGT Sbjct: 69 QKAVQAIVLTPTRELAIQVHDAMAQFIGNSGLRTLAIYGGQSIDRQMLQLKRGVHIVVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D + L + +K VLDEADEML +GF DD+E IL +P++R+ +FSAT+ P Sbjct: 129 PGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQERQTALFSATMPP 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250 +I L + + V V + + I+ A L+ + A+ IL + A++F Sbjct: 189 SIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMEDPETALIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR + + T L V G+LSQQ R L R + R +ATD+AARG+D+ Sbjct: 249 VRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAARGLDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L VI+ +L + E +HR GRTGRAG++G ++ ++ Q +RR +++F E +V W+ Sbjct: 309 DQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLV-QPFERRKQQIF-ERHVRQNWQ 366 >gi|114329100|ref|YP_746256.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1] gi|114317274|gb|ABI63334.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1] Length = 402 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 186/335 (55%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL + T +Q + P L +D+L AQTG+GKT AF L L L+ + +R Sbjct: 15 ILQALQAASFHKPTPIQAGAIPPLLEGRDLLGIAQTGTGKTAAFSLPLLQHLMQKRER-P 73 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A + AL +APTRELAVQ+ L L + + + +GGV + + +Q GA IV+G Sbjct: 74 RAFSTRALILAPTRELAVQIDDNLRMLGGELPIRRVLILGGVGRKPQVQRMQRGADIVIG 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+CD + L + + VLDEAD MLDLGF DI +L S P+KR+ L+FSAT+ Sbjct: 134 TPGRICDLMSTNELLLDQVSHFVLDEADRMLDLGFMRDIRKVLASLPEKRQSLLFSATMP 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ ++ RV IA E I + + + + +L + IVF Sbjct: 194 GEIGRLAEGLLRNPARVRIAVEEPTPDRIAQHVHFIESTGKRVLLTRLLADRALEKVIVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L E A+ G SQ R AL+ R G ARV +ATD+AARGID+ Sbjct: 254 TRTKHGANRVAEHLEESGIPADAIHGNKSQNARQRALERFRSGEARVLVATDIAARGIDV 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + V++ EL + PE+ +HR GRT RAG++G+++ Sbjct: 314 AGVSHVVNFELPNEPESYVHRIGRTARAGQRGIAI 348 >gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563] gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563] Length = 509 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/352 (34%), Positives = 192/352 (54%), Gaps = 8/352 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + + A+ E G+ T +Q + L KDV AQTG+GKT AFGL L Sbjct: 1 MKFNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMALEGKDVFGQAQTGTGKTAAFGLPLL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 ++ AL I PTRELAVQ G EL L G+ GG S+ + + Sbjct: 61 -------EKVHETGGVQALIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIK 113 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ +V+GTPGR+ D I+ L +++++ +VLDEADEML +GF +DIE I+ P + Sbjct: 114 LLKKNPPVVIGTPGRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRELPTE 173 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ I +A N+ D V++ ++ ID ++ + + + Sbjct: 174 RQTLLFSATVPQEIKRIADNFMNDPATVHVKTKQMTADLIDQYYSRCKDYEKFDLLTRFI 233 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + +IVF T+ V + L E + + G+LSQ +R L+ ++G+ + + Sbjct: 234 DVQNPELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDILV 293 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG++GMSV + N Sbjct: 294 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVTFVTSN 345 >gi|89075877|ref|ZP_01162256.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34] gi|89048406|gb|EAR53983.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34] Length = 461 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 201/379 (53%), Gaps = 16/379 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q L L KDV+ +TGSGKT AFGL L L + R Sbjct: 19 LTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQNLKVKRFRVQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A + V GG + L++GAHI+VGTPG Sbjct: 75 --TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + L +VLDEAD ML++GF+D ++ I+D +P R+ L+FSAT I Sbjct: 133 RVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIDVAPSDRQTLLFSATYPTQI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++AK ++ V V + S + S + + + DR A+ +L H ++ ++FC+T Sbjct: 193 ASIAKRIMRNPVEVKVESNHDNSSISQHFYKVESNDDRLRAVRLLLSQHRPESCVIFCNT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L ++ F +AL G+L Q+ER L + + + +ATDVAARG+D+ +L Sbjct: 253 KREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 + VI+ L+ + E +HR GRTGRAG KG++ + + L + + E P Sbjct: 313 DAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLEDYLDRPISGEALP 372 Query: 374 SVEAIRERDAQRILQDPLF 392 A+ +L P F Sbjct: 373 ---------AEHLLDQPTF 382 >gi|229014620|ref|ZP_04171734.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048] gi|228746631|gb|EEL96520.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048] Length = 464 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/365 (32%), Positives = 196/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L+ KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQRKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D PKKR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPKDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ + ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMDSPTHIEIKATGITTDKIEHILFEMREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ + R E + + AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium KLH11] gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium KLH11] Length = 455 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 13/349 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY + T +QE + L +DVL AQTG+GKT +F L + TLLA Sbjct: 16 PKVL-KAIEEAGYESPTPIQEGAIPAALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 73 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + G + Sbjct: 74 --ARARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVSFKEQDALIDRGVDV 131 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 132 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 191 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + RV +A + I+ V+ RD + ++ Sbjct: 192 TMAPEIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRDREASQKRKTLRALID 251 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAI+FC+ + V K L ++ + A+ G+L Q +R L RDG R+ Sbjct: 252 AEGDKCTNAIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRMKTLDGFRDGTLRLL 311 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +A+DVAARG+D+P + V + ++ +PE+ +HR GRTGRAGR+G ++ + Sbjct: 312 VASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITI 360 >gi|170696489|ref|ZP_02887614.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] gi|170138592|gb|EDT06795.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] Length = 537 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 144/404 (35%), Positives = 212/404 (52%), Gaps = 56/404 (13%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS--- 70 AL+ GY N T VQ+ + + +D++VS+ TGSGKT AF +L +RFS Sbjct: 64 ALTAAGYQNPTPVQQRAVPAAIAGRDLMVSSPTGSGKTAAF-------MLPAIERFSQLQ 116 Query: 71 -----------------------PASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 P + P L + PTRELA+QV G+ L+ L Sbjct: 117 KAQASQPREPRPADGARNTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTV 176 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S L+ +VLDEAD M Sbjct: 177 S------ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRM 230 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF +DIE I+ ++P R+ ++FSAT+ I +L KD R+ I Q ++I Sbjct: 231 LDMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRLEQRTNIA 290 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR G AIVF +T+ + LA+ F+ AL G+L Sbjct: 291 QTVHYVDDRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLP 350 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 351 QGARNRTIKALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 410 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP---APS 374 R G++V ++ Q +R ER R NV V +EP APS Sbjct: 411 RSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVVGFEPRKSAPS 454 >gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300] Length = 507 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 122/343 (35%), Positives = 187/343 (54%), Gaps = 9/343 (2%) Query: 12 GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 E L G+ T +Q + L D+L AQTG+GKT AFG+ L ++ + Sbjct: 14 AETLGNMGFEEPTPIQTDSIPYALHGLDILGQAQTGTGKTGAFGIPLIEKVVDK------ 67 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL +APTRELA+QV +L V VA GG+ + R+ + L+ G IVVGT Sbjct: 68 -EGVQALILAPTRELAMQVAEQLRAFSRGQRVQVATVFGGMPIGRQIKALKKGPQIVVGT 126 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190 PGR+ DH+ + L +K +++DEADEM+++GF DD+ FI+D P + R+ ++FSAT+ Sbjct: 127 PGRVIDHLNRRTLKTDDIKTLIIDEADEMMNMGFIDDMRFIMDHLPSEDRQTMLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI TL + + K V + ID +V ++ N L H + AIVF Sbjct: 187 KAIQTLVQQFMKSPKIVKTMNNEMSDPQIDEYYTIVKELEKFETFTNFLDVHQPELAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG+KG++V FV P M Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEM 349 >gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879] gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879] Length = 518 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 201/370 (54%), Gaps = 17/370 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + + E G+ + +QE + P L +DV+ AQTG+GKT AF L + +L +ND Sbjct: 33 KGIKEAGFTTPSPIQEKAIPPILERRDVIAQAQTGTGKTAAFALPILHSL--KND----- 85 Query: 73 SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 S+ AL I PTRELA+Q+ E+ ++L KT VC+ GG SV ++ ++ + Sbjct: 86 SSIEALVITPTRELAMQISDEVFKLGKFLKTKT-----VCVYGGQSVKKQLELIEKKPQV 140 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH++ + L VVLDE+DEMLD+GF DDIE I P + L+FSA Sbjct: 141 LIATPGRLLDHLKNERLKNFAPNVVVLDESDEMLDMGFIDDIEEIFQYIPNNAQTLLFSA 200 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I LA D V + I S + ++DI R ++ ++R+ A+ ++ + Sbjct: 201 TMPARIKQLADKILYDPVHIKIQSSSTTNADIAQRYYIINENERNEALTRLIDTESPSKS 260 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ L ++ AL G++ Q+ R +++Q + A + +ATDVAARG Sbjct: 261 IIFIRTKKEADEVNSYLQNKGYKSTALHGDMDQRMRRDSVQAFKGKEADILVATDVAARG 320 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ ++ V + + N E+ +HR GRTGRAG KG+++ + + +++ E N Sbjct: 321 LDIRNVSHVFNYHIPLNIESYVHRIGRTGRAGSKGVAITLATPLEYKDLKKIQNETNAKF 380 Query: 368 VWEPAPSVEA 377 PSV + Sbjct: 381 ELYEVPSVSS 390 >gi|262170498|ref|ZP_06038176.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451] gi|261891574|gb|EEY37560.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 212/367 (57%), Gaps = 12/367 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ +T +Q L L +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 R AL + PTRELA QV ++ L +T + V GG+ + + L++GA Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTL-GRTIHNIKVLTLCGGMPMGPQIGSLEHGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+F Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT +I +A++ ++A+ + +A+ + S Y + + RD A+ +L +H Sbjct: 185 SATYPASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALETLLLHHQPT 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAA Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ ++ Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364 Query: 366 SVVWEPA 372 ++ EP+ Sbjct: 365 AI--EPS 369 >gi|324329406|gb|ADY24666.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 481 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/365 (32%), Positives = 195/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPTHIEIKAAGVTTDKIEHVLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QDNVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|270158633|ref|ZP_06187290.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968] gi|289166549|ref|YP_003456687.1| ATP-dependent RNA helicase [Legionella longbeachae NSW150] gi|269990658|gb|EEZ96912.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968] gi|288859722|emb|CBJ13695.1| putative ATP-dependent RNA helicase [Legionella longbeachae NSW150] Length = 470 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 207/355 (58%), Gaps = 10/355 (2%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P Q + ++L+ Y N+T +Q L L+ +D++ AQTGSGKT AF L+L + Sbjct: 13 FSSLPLRQELIKSLASANYENMTPIQTQSLPIILKNQDIIAQAQTGSGKTAAFALSLLNN 72 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 L + S A L + PTRELA QV + + L V + + GG+ + + Sbjct: 73 L-----KIS-FFAVQGLVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMKPQLDS 126 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++GAH++VGTPGR+ H++ L++S LKA+VLDEAD MLD+GF DD++ I+ PK+R Sbjct: 127 LRHGAHLIVGTPGRILKHLKNGSLDLSQLKALVLDEADRMLDMGFFDDMKSIISVCPKQR 186 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT I ++K + + + + S + + +Y + + + + ++L Sbjct: 187 QTLLFSATYPEEIKQISKQFMNNPQEIRVESPAEEINIEEYFYEVTKQAQKFPLLKSLLL 246 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ + ++FC+TR T +L E F +AL+G++ Q +R A+ + + +A Sbjct: 247 HYRPVSTLIFCNTRQQTVEVTDLLIEEGFSAIALNGDMEQVDRDLAVLRFANHSCSILVA 306 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+ +L VI+ +L+ + E +HR GRTGRAG KG+++ P + QR Sbjct: 307 TDVAARGLDIKELSTVINFDLAFDHEVHIHRIGRTGRAGCKGIALSITTPADAQR 361 >gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Crocosphaera watsonii WH 8501] gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Crocosphaera watsonii WH 8501] Length = 480 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 147/463 (31%), Positives = 230/463 (49%), Gaps = 21/463 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L G+ + T +QE + L D+L +QTG+GKT A+ L + + +N Sbjct: 18 LQRLGFESPTEIQEKAIPLILESNDILGQSQTGTGKTAAYSLPILEQIDTKNPNVQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 L + PTRELA QV L+ + + + GG S+ R+ R L+ G IVVGTPGR Sbjct: 74 --TLILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLERGVQIVVGTPGR 131 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + D + K L + L+ VLDEADEML +GF DD++ IL +P+ R FSAT+ I Sbjct: 132 VIDLLERKKLVLDCLRWAVLDEADEMLSMGFIDDVKTILRKTPETRNTACFSATMPREIR 191 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCST 253 L + K V V++ + + ID V + A+ IL ++AI+F T Sbjct: 192 DLVNQFLKSPVTVSVERKQAAPTHIDQHLYYVPRGWSKRKALQPILEMEDPESAIIFVRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + S T L E V G LSQ +R + RDG+ ++ +ATD+AARG+D+ +L Sbjct: 252 KQTASELTTRLQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIKLVVATDIAARGLDVENL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSVVWE 370 VI+ +L N E +HR GRTGRAG+ G ++ +I + M R+ ER R+ + Sbjct: 312 SHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPVDRRMVRQIERKLRQKLETCKIP 371 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC- 429 VEA R Q +++ L + + +V L ++DP+ IAA L++ C Sbjct: 372 SRSQVEAKRIEKLQNEIKESLAGERM-ASFLPLVRELSDEYDPQAIAAAALQMIYDQDCP 430 Query: 430 --------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464 PE P ++ + ++ + + + + G +R N K Sbjct: 431 EWMKTDWEVPESAVPKPVIKRKGKY-NPNNSKRHGNSNRGNRK 472 >gi|146300157|ref|YP_001194748.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium johnsoniae UW101] gi|146154575|gb|ABQ05429.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae UW101] Length = 634 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 121/352 (34%), Positives = 200/352 (56%), Gaps = 10/352 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +A+ + G+ N + VQE + P L EKD ++ AQTG+GKT AFG L + A+N Sbjct: 15 KAILDLGFENPSEVQEKAI-PLLLEKDTDMVALAQTGTGKTAAFGFPLIQKIDADN---- 69 Query: 71 PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL ++PTREL +Q+ EL+ + + G+ V GG S+ + R+++ GA I+V Sbjct: 70 --RNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIKRGAQIIV 127 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGR+ D I +NI ++ +LDEADEML++GF +DI IL +P ++ +FSAT+ Sbjct: 128 ATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKNTWLFSATM 187 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + +AK + + V + + ++N + + + LV DR A+ + + ++V Sbjct: 188 PQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADANPDIFSVV 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ + L E + AL G+LSQ +R ++ R + ++ +ATDVAARGID Sbjct: 248 FCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDVAARGID 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 + ++ V++ +L E HRSGRTGRAG+ G S+ ++ ++ R+ + R Sbjct: 308 VDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIER 359 >gi|258625772|ref|ZP_05720651.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] gi|258582010|gb|EEW06880.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 212/367 (57%), Gaps = 12/367 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ +T +Q L L +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125 R AL + PTRELA QV ++ L +T + V GG+ + + L++GA Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTL-GRTIHNIKVLTLCGGMPMGPQIGSLEHGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+F Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT +I +A++ ++A+ + +A+ + S Y + + RD A+ +L +H Sbjct: 185 SATYPASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALETLLLHHQPT 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAA Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ ++ Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364 Query: 366 SVVWEPA 372 ++ EP+ Sbjct: 365 AI--EPS 369 >gi|196036086|ref|ZP_03103486.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|195991253|gb|EDX55221.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] Length = 481 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFVRQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans DS-1] Length = 504 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 200/368 (54%), Gaps = 11/368 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+SE GY T +Q + L +DVL AQTG+GKT +F L + L Sbjct: 10 PEVL-KAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMIDKLSRGRA 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV E + +A+ IGGVS + + L G + Sbjct: 69 R---ARMPRSLILEPTRELAAQVAENFETYGKYNKLSMALLIGGVSFGDQEKKLDRGVDV 125 Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++ TPGRL DH RGK L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FS Sbjct: 126 LIATPGRLLDHCNRGKVL-LTGVQILVIDEADRMLDMGFIPDIEEICKKLPFTRQTLFFS 184 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I L + + R+ +A + ++I + + + + ++ KN Sbjct: 185 ATMPPEIQRLTDTFLHNPERIEVARASSTSANIKQVLLKTTRDGKRDVLQRMIEEDNVKN 244 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+FC+ + VS + L++ A+ G+L Q R+ L R+G R+ +A+DVAAR Sbjct: 245 AIIFCNRKRDVSVLERALSKSGLSAGAIHGDLDQSTRTRTLDGFRNGTIRLLVASDVAAR 304 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+PD+ V + ++ S+ E+ +HR GRTGRAG+ G +V + R + + A Sbjct: 305 GLDIPDVSHVFNYDVPSHAEDYVHRIGRTGRAGKSGTAV-----TLSTREDGKYLAAIEK 359 Query: 367 VVWEPAPS 374 ++ P PS Sbjct: 360 LIGNPIPS 367 >gi|187935259|ref|YP_001885538.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str. Eklund 17B] gi|187723412|gb|ACD24633.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str. Eklund 17B] Length = 480 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 195/366 (53%), Gaps = 6/366 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY + VQE + LR KD++V +QTGSGKT +FG+ L + + ++ Sbjct: 16 KAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCEKIDWDENK---- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L +APTRELAVQ+ ++ + + G S+ + R L+ HIVVGTP Sbjct: 72 --PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQKTHIVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L++S V+DEADEML++GF +E I+ PKKR L+FSATI Sbjct: 130 GRVLDHIDRGSLDVSKTNYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTLLFSATIPEE 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L + + + I S+N ++ + A V + + + + NIL + ++VFC Sbjct: 190 IKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNNILISEMPETSVVFCR 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +V + L + + + G + Q++R + ++ R G R+ +ATD+A+RGID+ Sbjct: 250 TKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVATDIASRGIDIEG 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ E +HR GRTGRAG KG+++ + R + + + Sbjct: 310 ITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIEEYIGFKLEVKNL 369 Query: 373 PSVEAI 378 PS E I Sbjct: 370 PSKEEI 375 >gi|288929803|ref|ZP_06423646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp. oral taxon 317 str. F0108] gi|288328904|gb|EFC67492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp. oral taxon 317 str. F0108] Length = 636 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/353 (35%), Positives = 194/353 (54%), Gaps = 12/353 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56 MK F+ + + I A+ E G+ VQE ++ P L DV+ AQTG+GKT A+G+ Sbjct: 1 MKTFKELGVSEPICRAIEELGFEQPMPVQEEVI-PYLLGNGNDVIALAQTGTGKTAAYGI 59 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115 + + E AL ++PTREL +Q+ +L ++ G+ V GG S+ Sbjct: 60 PVLQKVNPEEKHTQ------ALILSPTRELCLQIADDLADFSKYVQGLHVVPVYGGASIE 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + R L+ GA I+V TPGRL D ++ + ++ VVLDEADEML++GF + I I + Sbjct: 114 MQIRQLRKGAQIIVATPGRLIDLMKRGVAQLDNVNNVVLDEADEMLNMGFTESINAIFEG 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 P R L+FSAT+S I +AKNY D + + S N +++ +V D+ A+ Sbjct: 174 VPADRNTLLFSATMSREIEKIAKNYLNDYKEIVVGSRNEGAEKVNHIYYMVNAKDKYLAL 233 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 ++ ++ AI+FC T+ L + AL G+LSQQ+R +Q R+ Sbjct: 234 KRLVDFYPRIFAIIFCRTKLETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRNHNV 293 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + +ATDVAARG+D+ DL V++ L + E+ HRSGRTGRAG+KG S+ +I Sbjct: 294 QFLVATDVAARGLDVDDLTHVVNYGLPDDIESYTHRSGRTGRAGKKGTSISII 346 >gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649] gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649] Length = 540 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 11/361 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P ++ AL+ G +Q L L D++ A+TG+GKT+ FG+ L + ++ Sbjct: 38 FAIHPDIV-SALAAHGITTPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPLLNKVI 96 Query: 64 AENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 A D F P ALA+APTRELAVQV +LE G+ V GG + + Sbjct: 97 ARGDDKWDGFVHKGKPQALAVAPTRELAVQVSADLERAGKARGIRVLTVYGGRAYEPQID 156 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L G +VVGTPGRL D + L++SH K VVLDEADEMLDLGF D+E +L + Sbjct: 157 ALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADEMLDLGFLPDVEKLLAMTSPG 216 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-----DRDNA 234 R+ ++FSAT+ A+ LA+ Y + E + +A+ + D+ Sbjct: 217 RQTMLFSATMPGAVVALARRYMTQPTHIRAMQEGEGDTSQTVKAITQHVYRAHAMDKVEM 276 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L+ +G IVF T+ + ++ LAE F A+ G+L Q R AL+ R G+ Sbjct: 277 LARMLQANGRGLTIVFSRTKRTAAKVADDLAERGFAAAAIHGDLGQGAREQALRAFRSGK 336 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 V +ATDVAARGID+ ++ VI+ + + + +HR GRTGRAG+ G++V FV ++ Sbjct: 337 VDVLVATDVAARGIDVENVTHVINYQCPEDEKTYVHRIGRTGRAGQTGIAVTFVDWDDLH 396 Query: 354 R 354 R Sbjct: 397 R 397 >gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] Length = 538 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 184/346 (53%), Gaps = 14/346 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR----F 69 +LSE G +Q L L D++ A+TG+GKT+ FG+ ++ E D+ Sbjct: 40 SLSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPALQRVVREGDKGYEDL 99 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP AL +APTRELA+QVG +L + + + GG + L+ G ++V Sbjct: 100 EFPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYEEQINALKAGTDVIV 159 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL D R + LN+ +K VVLDEADEMLDLGF D+E IL + P R+ ++FSAT+ Sbjct: 160 GTPGRLIDLNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAALPPVRQAMLFSATM 219 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHS-------DIDYRAVLVALSDRDNAIVNILRYH 242 A+ T+A+ Y + S + YRA + D+D + +L+ Sbjct: 220 PGAVITMARRYMTRPTHIRAQDPGDDDSLTKRNIRQLIYRAHNM---DKDEMVARLLQAE 276 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G I+F T+ S +R + L + F +L G+L Q R AL+ R G+ + +ATD Sbjct: 277 GRGKTIIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKAFRSGKVEILVATD 336 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ D+ V++ + + LHR GRTGRAG G +V + Sbjct: 337 VAARGIDVDDVTHVVNLQCPDDENTYLHRVGRTGRAGNTGTAVTFV 382 >gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R] Length = 427 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 189/344 (54%), Gaps = 6/344 (1%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ + I +AL + GY + T +QE + L+ KD+L AQTG+GKT AF + + Sbjct: 3 FENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + R AL + PTRELA+Q+G E TG+ AV GGV + L Sbjct: 63 LYKTDHR----KGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDAL 118 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 ++G I+V TPGRL D I +++S L VLDEAD MLD+GF DI+ IL P +R+ Sbjct: 119 RSGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQ 178 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ P I TLA + +V + + I + V ++ + ++++L+ Sbjct: 179 TLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKD 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ ++F T+ + +VL + A+ G +Q R AL ++ R IAT Sbjct: 239 TSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+AARGID+ L VI+ EL + PE +HR GRTGRAG +G+++ Sbjct: 299 DIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAI 342 >gi|156548270|ref|XP_001601432.1| PREDICTED: similar to GA21647-PA [Nasonia vitripennis] Length = 460 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 210/371 (56%), Gaps = 13/371 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q + ++ KDV+ A+TGSGKT AF L + LL R+ AL + PT Sbjct: 48 TKIQREAIPLTIQGKDVIGLAETGSGKTAAFALPILQALLENPQRY------FALILTPT 101 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142 RELA Q+ + E L A GV V +GG+ + + L HI++ TPGRL DH+ K Sbjct: 102 RELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLAKKPHIIIATPGRLVDHLENTK 161 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G N+ LK +V+DEAD +L++ F +++ IL P++RR L+FSAT++ + L + + Sbjct: 162 GFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLQ 221 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 + V+V ++++ + + V + + +D +V+IL + ++FCST + R Sbjct: 222 NPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILNELSGNSFMIFCSTCNNTMRTAL 281 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 +L F V L G++SQ +R AL + + I+TDVA+RG+D+P +++VI+ ++ Sbjct: 282 LLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDVVINFDIP 341 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAIR 379 ++ ++ +HR GRT RAGR G+SV + Q + +R E+L + + + V ++ Sbjct: 342 THSKDYIHRVGRTARAGRSGISVTFVTQYDVELYQRIEQLIGK-QLPIYKTEEQEVMVLQ 400 Query: 380 ER--DAQRILQ 388 ER +AQR+++ Sbjct: 401 ERVAEAQRMVK 411 >gi|229170156|ref|ZP_04297843.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621] gi|228613301|gb|EEK70439.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621] Length = 481 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/365 (32%), Positives = 196/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L+++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ ++ + + ++ + I+FC T Sbjct: 192 EKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTTENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V K L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ + R E + + AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|91794299|ref|YP_563950.1| ATP-dependent RNA helicase DbpA [Shewanella denitrificans OS217] gi|91716301|gb|ABE56227.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 470 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/372 (35%), Positives = 200/372 (53%), Gaps = 13/372 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L GY ++T +Q L P L DV+ +TGSGKT AFGL L + L + R Sbjct: 27 ENLKTMGYESMTQIQAQSLPPILAGDDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQ-- 84 Query: 73 SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L + PTRELA QV +E+ L + V GGV + + L++GAHI+VGT Sbjct: 85 ----TLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQVGSLEHGAHIIVGT 140 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S++ +VLDEAD ML++GF+D I+ I++ +P++R+ L+FSAT Sbjct: 141 PGRIIDHLDRNRLDLSNVNMLVLDEADRMLEMGFQDHIDAIIEQTPRERQTLLFSATFPD 200 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---KNAI 248 I ++A V V + S H I L D + + + + ++A+ Sbjct: 201 QIKSIADEIMYKPVMVKVES---THDAISIEQHFYQLEDNKSRLEALRLLLLSEQPESAV 257 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+T+ + LAE F V+AL G+L Q++R L + AR+ +ATDVAARG+ Sbjct: 258 VFCNTKRETQQVADELAEFGFSVLALHGDLEQRDRDQMLLQFANQSARILVATDVAARGL 317 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ L+ V + L+ + E LHR GRTGRAG G + I + + + N+ +V Sbjct: 318 DIDALDAVFNFHLAYDAEVHLHRIGRTGRAGSTGAAYSFIGHDDGYKVAMIEEMLNIEIV 377 Query: 369 WEPAPSVEAIRE 380 E P + + + Sbjct: 378 TEALPGLNVLNK 389 >gi|327439299|dbj|BAK15664.1| superfamily II DNA and RNA helicase [Solibacillus silvestris StLB046] Length = 481 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 181/338 (53%), Gaps = 10/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL + Y T VQ+ +L L+E+D++V AQTGSGKT AF + + + EN Sbjct: 17 ALKDLDYSTPTEVQQKVLPHALKEQDLIVKAQTGSGKTAAFAIPICENIEWIEN------ 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTRELAVQV E + + G ++ +L+ HI VGTP Sbjct: 71 -KPQALVLTPTRELAVQVKEEFTNIGRYKRIKATALYGKQPFRYQQDELKQKTHIAVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L + ++ VVLDEADEML++GF + +E IL + M++FSAT+ + Sbjct: 130 GRVLDHIEKGTLKLDKIRYVVLDEADEMLNMGFIEQVEAILAHVEHREVMMLFSATVPES 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA NY D V + + SE I++ + V ++ A+ I I+FC Sbjct: 190 IKKLASNYLNDPVDIEVQSEEAA-PKIEHAVIEVQDEEKTAAVEKIAVVENPDTCIIFCR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V L + + V L G + Q R + + G R +ATDVAARGID+ + Sbjct: 249 TKDRVDALHDYLYDREYSVDKLHGGMDQSTRLLVMNDYKRGDFRYLVATDVAARGIDIEN 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 + LVI+ +L E +HR+GRTGRAG++G +V FV P Sbjct: 309 ISLVINYDLPMEKEAYVHRTGRTGRAGKEGKAVTFVTP 346 >gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043] gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043] Length = 605 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/374 (34%), Positives = 208/374 (55%), Gaps = 13/374 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A + GY + + +Q A + L +DV+ AQTG+GKT AF L + + L + Sbjct: 37 ILKATRDLGYEHPSPIQAATIPAMLEGRDVVGLAQTGTGKTAAFALPILARLDLKQ---- 92 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL +APTRELA+QV E A GV V GG + L+ G H+VV Sbjct: 93 --KTPQALVLAPTRELALQVCEAFERYAANLRGVHVLPVYGGQGYGVQLSALRRGVHVVV 150 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++S L+ +VLDEADEML +GF +D+E IL +P +++ +FSAT+ Sbjct: 151 GTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPADKQVALFSATM 210 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I ++K + D V + + ++ +I R ++V+ + +A+ IL + IV Sbjct: 211 PAQIRRISKQHLTDPVEITVKAKTTTAPNITQRYLIVSYPQKVDALTRILEVENFEGMIV 270 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + L F A++G++ Q +R + +R G+ + +ATDVAARG+D Sbjct: 271 FVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILVATDVAARGLD 330 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366 + + V++ ++ ++ E+ +HR GRTGRAGR G ++ FV P +++ + E+ R+ Sbjct: 331 VERISHVVNFDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERHLLKAIEKATRQGLTE 390 Query: 367 VVWEPAPSVEAIRE 380 + P+VE I E Sbjct: 391 MR---PPTVEDINE 401 >gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684] gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM 14684] Length = 481 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 195/368 (52%), Gaps = 7/368 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL + GY N + +QE + P L D++ AQTGSGKT AFGL L + + Sbjct: 15 EALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLMEYVDPSDRDVQ-- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTREL +QV + L A+ G+ V GG + ++ L+ G IVVGT Sbjct: 73 ----ALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQLRAGGQIVVGTV 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I L + + VVLDEADEMLDLGF +D+E IL +P R+ +FSAT+ P Sbjct: 129 GRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQTALFSATMPPE 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L++ Y + V V + + ++ ++ ++ D+ + + +L AIVF Sbjct: 189 IRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLESEKPDQAIVFVR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + V AL G++SQ +R + + GR + +ATDVAARG+D+ Sbjct: 249 TKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVATDVAARGLDISS 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV-WEP 371 + V++ ++ ++P+ +HR GRTGR GR G ++ +R E + R + W Sbjct: 309 VTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIERHTRTPMAPWTA 368 Query: 372 APSVEAIR 379 V A+R Sbjct: 369 GARVAALR 376 >gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725] gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725] Length = 452 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 130/342 (38%), Positives = 189/342 (55%), Gaps = 5/342 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L++RG ++QE L L +D++ A+TG GKT FG+ L + + D Sbjct: 20 ICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDRVFDDADIAP 79 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P P AL + PTRELA QV +L+ A V +A GG + + LQ G +V+G Sbjct: 80 PDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLAAIYGGRPYEEQIKLLQRGVDVVIG 139 Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSAT 188 TPGRL D H RG L + H+ VVLDEADEMLDLGF IE IL++ + ++FSAT Sbjct: 140 TPGRLLDLHERGD-LVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAHQTMLFSAT 198 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKN 246 + AI L++ + V + SE + + R V D+ I +IL+ G Sbjct: 199 MPGAILNLSRQFMHKPVHIRAESEADEVTHETTRKVTFQAHRMDKVAVIAHILQAQGRGR 258 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +I+F T+ S ++ LAE F V A+ G+L Q+ R +LQ R G + +ATD+AAR Sbjct: 259 SIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDILVATDIAAR 318 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ D+ VI+ ++ +P +HR GRTGRAG G +V ++ Sbjct: 319 GIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLV 360 >gi|54297986|ref|YP_124355.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Paris] gi|53751771|emb|CAH13194.1| hypothetical protein lpp2042 [Legionella pneumophila str. Paris] Length = 468 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 207/356 (58%), Gaps = 12/356 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F P Q + ++L+ Y N+T +Q L LR +D++ A+TGSGKT AF L L + Sbjct: 13 FSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLLNN 72 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 L + S A AL + PTRELA QV + + L V + + GG+ + + Sbjct: 73 L-----KIS-FFAVQALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDS 126 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++GAHI+VGTPGR+ H++ L++S +KA+VLDEAD MLD+GF DDI+ I+ PK+R Sbjct: 127 LRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQR 186 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239 + L+FSAT I L+K + KD V++ + + DI+ V+ + ++ ++L Sbjct: 187 QTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEE-IDIEQHFYEVSRHAQKFPLLKSLL 245 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 ++ + ++FC+T+ T L F +AL+G++ Q ER A+ + + + Sbjct: 246 LHYRPVSVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQVERDLAVLRFANQSCSILV 305 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ATDVAARG+D+ +L VI+ +L+ + + +HR GRTGRAG KG+++ V P + QR Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQR 361 >gi|150025749|ref|YP_001296575.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum JIP02/86] gi|149772290|emb|CAL43768.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacterium psychrophilum JIP02/86] Length = 414 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 190/345 (55%), Gaps = 2/345 (0%) Query: 3 IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FE++ + I A+ E GY++ T +QE + L +D++ AQTG+GKT AF + + Sbjct: 2 LFEDLSLSKSIQRAVFEEGYLSATPIQEQSIPIILAGQDLIGCAQTGTGKTAAFAIPIIH 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L L + PTRELAVQ+G + T + GGVS + + Sbjct: 62 NLHRIVGSSKKEKLIRTLVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVEQ 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++G I++ TPGRL D + +N+ H+ +VLDEAD+MLD+GF +D++ I+ +PK R Sbjct: 122 LKSGIDILIATPGRLLDLHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKNR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ AI LA+ + D V +A + +D R V +D+ + +I++ Sbjct: 182 QTLLFSATMPIAIRELAEMFLTDPATVQVAPVSSTIETVDQRLYYVDKADKRQLLYHIIK 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 N +VF T+ K L + A+ G+ SQ R AL ++ + +A Sbjct: 242 EEKLSNILVFSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACDILVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TD+AARGID+ L VI+ +L + PE +HR GRTGRAGR+GM++ Sbjct: 302 TDIAARGIDIEFLPYVINFDLPNIPETYVHRIGRTGRAGREGMAI 346 >gi|149919487|ref|ZP_01907967.1| DEAD/DEAH box helicase [Plesiocystis pacifica SIR-1] gi|149819612|gb|EDM79039.1| DEAD/DEAH box helicase [Plesiocystis pacifica SIR-1] Length = 1390 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 127/346 (36%), Positives = 195/346 (56%), Gaps = 10/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + A+ G+ T VQ ++ DVLV +QTGSGKT AF L + Sbjct: 163 LPEHVRNAVDAAGWTAPTKVQARTYETMIQGTDVLVQSQTGSGKTGAFCLPWLA------ 216 Query: 67 DRFSPASAPLA----LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +RF P A + + PTRELA QV EL L +T V V GG +++ + L Sbjct: 217 NRFQPGDAAETGVQLIVLLPTRELAKQVCNELVRLAIETPVDVLPVYGGTAMNPQLDALA 276 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G H VVGTPGR+ DHIR K L++S ++ VVLDE DEML +GF +DI IL + PK+R+ Sbjct: 277 RGVHAVVGTPGRVLDHIRRKSLDLSKVRTVVLDECDEMLSMGFLEDIRAILRACPKERQT 336 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I +A+ ++ + ++ ++ ++I + S + +V+++ Sbjct: 337 CLFSATVPRDIARIARRDMREPEHIVLSGDDIAAAEIYHGFYSTGGSIKTRDLVDMIIVE 396 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A+VFC+TR VL ++ + ALS +L+Q R + + + RD + R +ATD Sbjct: 397 DPAAAMVFCNTREETRLVASVLQKNGYSAHALSSDLTQAAREHVMGLFRDRKLRFLVATD 456 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI+ N EN +HR+GRTGRAGR G+++ ++ Sbjct: 457 VAARGIDVSHVSHVINYSFPENAENYVHRTGRTGRAGRPGVALSIV 502 >gi|332520832|ref|ZP_08397292.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043362|gb|EGI79558.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 622 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 207/365 (56%), Gaps = 10/365 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + +++ G+ + VQE + L+ E D++ AQTG+GKT AFG + + N R + Sbjct: 15 KGITDLGFETPSEVQEKAIPILLQDEGDLVALAQTGTGKTAAFGFPMLQKIDV-NSRTTQ 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 L ++PTREL +Q+ E++ Y K G+ V GG S+ + R+++ GA I+V Sbjct: 74 G-----LILSPTRELCLQIANEMKAYGKYCK-GLNVVAIYGGSSITDQAREVKRGAQIIV 127 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGR+ D I K ++I+ ++ VLDEADEML++GF++DI IL +PK + +FSAT+ Sbjct: 128 ATPGRMKDMISRKLVDITKIQYSVLDEADEMLNMGFKEDITDILSGTPKDKSTWLFSATM 187 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + +AK++ + + + +N S++ + LV DR A+ + + +++ Sbjct: 188 PKEVARIAKDFMHEPQEITVGHKNESTSNVSHEYYLVNARDRYQALKRLADANPDIFSVI 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ + + L E + AL G+LSQ +R ++ R + ++ +ATDVAARGID Sbjct: 248 FCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDIVMKQFRTRQIQMLVATDVAARGID 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + D+ VI+ +LS E HRSGRTGRAG+ G+S+ ++ ++ RR + R N Sbjct: 308 VDDVTHVINYQLSDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRRLRSIERIINKKFEK 367 Query: 370 EPAPS 374 + P+ Sbjct: 368 KDIPN 372 >gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster bacterium] Length = 614 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 158/565 (27%), Positives = 277/565 (49%), Gaps = 34/565 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 I + L GY + +QE + L +D++ AQTG+GKT AF L L + L+ N Sbjct: 23 ILKVLDSIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFALPLLDNIDLSLN--- 79 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHI 127 AP L +APTRELA+QV ++ +YA+ G V GG S + R L+ G H Sbjct: 80 ----APQLLILAPTRELAIQVSEAVQ-VYARGLKGFHVLPIYGGQSYDIQLRPLKRGVHC 134 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DHI+ L + LK+ VLDEADEML +GF DDI+++++ P++R++ +FSA Sbjct: 135 VVGTPGRVMDHIKKGTLKLDQLKSFVLDEADEMLKMGFIDDIKWVMERIPEQRQIALFSA 194 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKN 246 T+ I +A+ + + V + ++ I + LV LS + +A+ IL Sbjct: 195 TMPNIIKRVAEKFLNNPKIVKVKTKTETAPTIGQKYCLVGGLSQKLDALTRILEVTEFDA 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ ++ L+ F A++G++ Q +R + + G + +ATDVAAR Sbjct: 255 MIIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGIDILVATDVAAR 314 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+P + V++ ++ + E +HR GRTGRAGR+G ++ + +R + R Sbjct: 315 GLDVPRISHVVNYDIPQDAETYVHRIGRTGRAGREGEAILFVSHRERRMLNNIERVTRQK 374 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI--- 423 + P+ + I E+ + ++I + + + L+ + L++ Sbjct: 375 IEPLELPTAKIINEKRIDTFKKR--ITETINNQDLSVFEKLVTEFQEANEEIAHLKVAAA 432 Query: 424 --HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS-RDNFK-GSSWFSLSVGSKQKA 479 H A P ++ GRD+ + + V S +D+ K + L VG+ Sbjct: 433 LAHIAQGNEPLLLSEKEPSFGRDQKPGEEKVVPVEANSLKDHPKIPMRRYKLEVGNNNNI 492 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQLKY 535 + ++ + + ++ + IG+I++ + + V E+ + + +L++TV K + + Sbjct: 493 KPGNILGAIANEADMDSEYIGSIQIFDNFSTVDLPDEMPEEVLKVLQKTVVNGKRLNIVE 552 Query: 536 L---------GGEKPDFRGYKSSGF 551 L GG KP R + F Sbjct: 553 LTEKNNKATVGGSKPGKRNFGRGKF 577 >gi|332297229|ref|YP_004439151.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM 12168] gi|332180332|gb|AEE16020.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM 12168] Length = 632 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 126/346 (36%), Positives = 190/346 (54%), Gaps = 10/346 (2%) Query: 37 EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 E +V+ A+TG+GKT AFGL L T+ + AL +APTRELA+QV +E++ Sbjct: 43 EANVIAKARTGTGKTAAFGLPLVQTIREDKGHVR------ALILAPTRELALQVCKEIDS 96 Query: 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156 L T +A GG S+ + R L+ G IVVGTPGR+ DHI K L++S + +LDE Sbjct: 97 LTTGTYPRLAAVYGGQSMGEQLRALKRGVEIVVGTPGRVQDHIERKSLDLSQIDYFILDE 156 Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 ADEMLD+GF DDIE I + + R+L+FSAT+ I +A + D V + + Sbjct: 157 ADEMLDMGFIDDIEAIFAKANPESRILLFSATMPQPILKIASRFMGDYEIVEEETSPEEP 216 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 + + +V SD+ A+V ++ +VF T+A T+ L E ++ AL G Sbjct: 217 VLTEQKYWIVRESDKIEALVRLIDISPDFYGLVFTQTKADADMITRQLDERGYEAAALHG 276 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 ++ Q +R L R+ + R+ +ATDVAARGID+ L V++ L + +HR GRTG Sbjct: 277 DIPQAQREKILYRFRNKKTRILVATDVAARGIDIEGLTHVVNYALPFDGPTYVHRIGRTG 336 Query: 337 RAGRKGMSVFVIPQNMQRRAERLF----REANVSVVWEPAPSVEAI 378 RAG KG++ ++ +R+ E L + A ++ P P V + Sbjct: 337 RAGAKGLAFTLVRPEERRKLEYLKAAVRKSAKGTMTEAPVPPVSDV 382 >gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 471 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 193/338 (57%), Gaps = 3/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E GY T +Q + L D+L AQTG+GKT AF L + L++ + + Sbjct: 17 IQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIHNLISTRAKPN 76 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P P +L + PTRELA+QV E LY K T + AV GGV + + + + +G +++ Sbjct: 77 PKQ-PRSLVLVPTRELAIQV-HESFVLYGKYTQIRTAVIFGGVGQNPQAKAIASGLDVLI 134 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + +++ +L+ VLDEAD MLD+GF DI I+ PK+R+ L FSAT+ Sbjct: 135 ATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKRRQNLFFSATM 194 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I LA + + +R+++ + I + L+D+ N ++++ + K I+ Sbjct: 195 PPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNLLLHLFKDKNFKKTII 254 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ +++L + + + G SQ R AL+ R G+ R +ATD+AARGID Sbjct: 255 FTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRALVATDLAARGID 314 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 + D+ VI+ E+ PE +HR GRT RAG+ G+++ + Sbjct: 315 IDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAI 352 >gi|302525261|ref|ZP_07277603.1| ATP-dependent RNA helicase [Streptomyces sp. AA4] gi|302434156|gb|EFL05972.1| ATP-dependent RNA helicase [Streptomyces sp. AA4] Length = 613 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 195/360 (54%), Gaps = 5/360 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + AL+E G +Q A + L +DVL AQTGSGKT+AFGLA+ + L Sbjct: 87 GLPEPLLRALAEAGIDAPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAILARLDGG 146 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P AL + PTRELA+QV L L G+ +GG+S R+ L G Sbjct: 147 KAR---PKRPRALVLVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMSFGRQAESLARGV 203 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH+R ++ + LDEAD+M D+GF + I+D +P + L+F Sbjct: 204 DLLIATPGRLSDHVRQGTASLGDCNFIALDEADQMADMGFMPQVREIMDLTPPGGQRLLF 263 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + Y D V ++A + +D+ V+ SD+ + I I G Sbjct: 264 SATLDGDVDKLVRQYLADPVTHSVAPSTASVTTMDHHLFQVSHSDKQDIITRIGAREG-- 321 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ V R T+ L E VAL G +Q +R+ L ++G A V +ATDVAA Sbjct: 322 RTIMFVRTKHHVDRLTERLRESGVHAVALHGGKTQGQRNRVLADFKEGHAAVLVATDVAA 381 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + ++ LV+H + +++ ++ LHR+GRT RAG G+ V ++ + +R R+ A V Sbjct: 382 RGIHVDNISLVLHVDPAADHKDYLHRAGRTARAGASGIVVTLVTHDQRRTVRRMTDRAGV 441 >gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46] gi|60681162|ref|YP_211306.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343] gi|253563072|ref|ZP_04840529.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5] gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16] gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46] gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343] gi|251946848|gb|EES87130.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5] gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16] Length = 427 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 189/344 (54%), Gaps = 6/344 (1%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ + I +AL + GY + T +QE + L+ KD+L AQTG+GKT AF + + Sbjct: 3 FENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + R AL + PTRELA+Q+G E TG+ AV GGV + L Sbjct: 63 LYKTDHR----KGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDAL 118 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 ++G I+V TPGRL D I +++S L VLDEAD MLD+GF DI+ IL P +R+ Sbjct: 119 RSGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQ 178 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ P I TLA + +V + + I + V ++ + ++++L+ Sbjct: 179 TLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKD 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ ++F T+ + +VL + A+ G +Q R AL ++ R IAT Sbjct: 239 TSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+AARGID+ L VI+ EL + PE +HR GRTGRAG +G+++ Sbjct: 299 DIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAI 342 >gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 405 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 132/380 (34%), Positives = 210/380 (55%), Gaps = 32/380 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + ++L E GY T +QE + + KD++ AQTG+GKT AFG+ + Sbjct: 12 NLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIV------ 65 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ +P + AL + PTRELA+QV +E++ L V GG S+ + L+ G Sbjct: 66 -EKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKKG 124 Query: 125 AHIVV-GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 + +VV GTPGR+ D + LN+ ++K VLDEAD ML++GF DDIE I+ P+ R+ L Sbjct: 125 SDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQNL 184 Query: 184 MFSATISPAITTLAK---NYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVN 237 +FSAT+ I LA+ N + +RV + E + I YR V D+ + Sbjct: 185 LFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQ--IIYR---VNPRDKFKKLTE 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L + A+ I+F T+ + L E F A+ G+ SQ++R L R G+ ++ Sbjct: 240 VLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------Q 350 +ATDVAARG+D+ ++LVI+ L + E+ +HR GRTGRAGR+G ++ ++ Q Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQ 359 Query: 351 NMQRRAERLFREANVSVVWE 370 N+Q++ +AN+ V+ E Sbjct: 360 NIQKKT-----KANIEVINE 374 >gi|170759986|ref|YP_001785987.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch Maree] gi|169406975|gb|ACA55386.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch Maree] Length = 425 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 189/345 (54%), Gaps = 2/345 (0%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I +AL E GY T +QE + L +D++ AQTG+GKT AF + + Sbjct: 2 LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVLQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L + AL +APTRELA+Q+G E + AV GGVS + + + Sbjct: 62 NLSKDKKVNKDPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G I++ TPGR+ D K +++ +++ VLDEAD MLD+G D++ I+ PK R Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKAR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ IT L + KD +RV + + I V + + ++L+ Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++A+VF +T+ + K L E + A+ G SQ R AL ++G+ RV +A Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TD+AARGID+ +L V + L PE +HR GRTGRAG KG+++ Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAI 346 >gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior] Length = 448 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 120/371 (32%), Positives = 211/371 (56%), Gaps = 13/371 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q+ + L+ KDV+ A+TGSGKT AF L + LL R+ AL + PT Sbjct: 42 TRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLENPQRY------FALILTPT 95 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142 RELA Q+ + + L + GV V +GG+ +H + L+ HI++ TPGRL DH+ K Sbjct: 96 RELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEKKPHIIIATPGRLVDHLENTK 155 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G N+ LK +V+DEAD +L++ F +++ IL P++RR L+FSAT++ + L + + Sbjct: 156 GFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLR 215 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 + V+V ++++ + + + + + +D +V+IL + ++FC T + R Sbjct: 216 NPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFMIFCGTCNNTVRTAL 275 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 +L F V L G+++Q +R AL + + I+TDVA+RG+D+P +++VI+ ++ Sbjct: 276 LLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIP 335 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAIR 379 ++ ++ +HR GRT RAGR G S+ + Q + +R E+L + + + V ++ Sbjct: 336 THSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISK-QLPLFPTEEEEVMLLQ 394 Query: 380 ER--DAQRILQ 388 ER +AQRI++ Sbjct: 395 ERVSEAQRIVK 405 >gi|167908511|ref|ZP_02495716.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei NCTC 13177] Length = 435 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 134/356 (37%), Positives = 192/356 (53%), Gaps = 8/356 (2%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T +Q A L L D++ A+TGSGKT AF LAL + L A RF AL + P Sbjct: 1 MTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ----ALVLCP 54 Query: 83 TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 TRELA QV +E+ L A+ V V GG + + + L++GAHI+VGTPGR+ DH+ Sbjct: 55 TRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPGRIMDHLDR 114 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201 L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I L++ + Sbjct: 115 GHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFL 174 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 + RV + E S I R V +R +A+ +L ++ + I FC+T+ Sbjct: 175 RHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLL 233 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 VL F +AL GEL Q+ER L + V +ATDVAARG+D+ LE VI+ ++ Sbjct: 234 DVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293 Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 + +PE +HR GRTGRA + G ++ + N R + + V W P ++A Sbjct: 294 TPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLAELKA 349 >gi|325104041|ref|YP_004273695.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] gi|324972889|gb|ADY51873.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] Length = 451 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 190/347 (54%), Gaps = 2/347 (0%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE N+ Q I +AL Y T +Q + L+ KD+L AQTG+GKT AF + + Sbjct: 1 MTSFETLNLIQPIQKALKALNYQTPTPIQAQAIPLILQRKDLLGCAQTGTGKTAAFAIPI 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 L + + + AL + PTRELA+Q+G + AV GGV+ + Sbjct: 61 LQLLDEDLKKNHQKNTIKALIVTPTRELAIQIGDSFSDYGKNLRLKHAVIFGGVNQKSQV 120 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 LQ G I+V TPGRL D + K L++ H+ VLDEAD MLD+GF +D++ I+ P+ Sbjct: 121 DALQKGVDILVATPGRLLDLMHQKHLSLKHINLFVLDEADRMLDMGFINDVKKIIAVLPQ 180 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ L FSAT+ P I L++ K V+V + + I+ V +++++ +++I Sbjct: 181 HRQSLFFSATMPPVIQKLSEEILKSPVKVEVTPVSSTADTINQTVFFVDKNNKNDLLLHI 240 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ + +VF T+ R K LA+ + A+ G SQ R AL + RV Sbjct: 241 LKDQLLDSVLVFTRTKHGADRVVKTLAKQHIKSAAIHGNKSQNARQRALDDFKTKAIRVL 300 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATD+AARGID+ L+ VI+ E+ + PE +HR GR+GRAG +G+++ Sbjct: 301 VATDIAARGIDIDSLKYVINYEIPNIPETYVHRIGRSGRAGAEGIAI 347 >gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 515 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 140/415 (33%), Positives = 211/415 (50%), Gaps = 17/415 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL E G+ + +Q+ + L DV+ A TG+GKT AFGL A L+ +N Sbjct: 22 ILQALQEAGFKIASPIQKQAIPVVLAGHDVVAQAHTGTGKTAAFGLP-ALHLIHDN---- 76 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P S L L PTRELA QV EL L G+ A GG S + LQ G ++V Sbjct: 77 PGSQLLVLT--PTRELASQVSDELFRLGRHLGIRTATICGGKSFRPQIEALQRGVQVIVA 134 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L VVLDEADEMLD+GF + I+ I P KR+ L+FSAT+ Sbjct: 135 TPGRLQDLLESDSLPDFRPAIVVLDEADEMLDMGFLEAIQRIFTFLPAKRQTLLFSATMP 194 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 AI LA K + +++ + + DI ++ +RD+AI+ +L +I+F Sbjct: 195 SAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAILRLLDSEEPAKSIIF 254 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V R + L + + L G++ Q +R ++ R + RV +ATDVAARG+ + Sbjct: 255 CRTKKDVDRLSTTLVANGYHARGLHGDMEQPQREEVIRHFRSEQIRVLVATDVAARGLSV 314 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D+ V + L +P + +HR GRTGRAG KG++ + R +R + + E Sbjct: 315 SDVSHVFNYHLPFDPASYVHRIGRTGRAGNKGVASTFVTLREWREFQRYEKVTGAPINRE 374 Query: 371 PAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421 P++E + R++ RI PL E ++V L+ + D + + F+ Sbjct: 375 IIPTLEDVKKLKRQKLVSRIQNQPLH------QETELVLELMKEVDHSTLVSKFI 423 >gi|294139294|ref|YP_003555272.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea DSS12] gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea DSS12] Length = 478 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 194/355 (54%), Gaps = 5/355 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++ +GY + +Q + L KDV+ +AQTG+GKT F L L LL+ +R + Sbjct: 12 ILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLSRGNR-A 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV +E + AV GGV + + L G I+V Sbjct: 70 QAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKLGKGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D +N + L+ ++LDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 130 TPGRLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N ++ +V + A++++++ + K +VF Sbjct: 190 DDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQKTAALIHLIKQNDWKQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + A+ G SQ R+ AL ++G RV +ATD+AARGID+ Sbjct: 250 SRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRVLVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362 L V++ +L + PE+ +HR GRTGRAG G +V ++ + R ERL ++ Sbjct: 310 DQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRDIERLIKQ 364 >gi|224825377|ref|ZP_03698482.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] gi|224602298|gb|EEG08476.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] Length = 460 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 130/344 (37%), Positives = 193/344 (56%), Gaps = 12/344 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73 L+ GY +T +Q L L +D++ A+TGSGKT AFGL L D+ +P Sbjct: 19 LASLGYTRMTPIQAQSLPVILNRQDLIAQAKTGSGKTAAFGLGLL-------DKINPRWF 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV +E+ L VV +C GG + + L++GAH+VVGT Sbjct: 72 AVQALVLCPTRELADQVAKEIRRLARSVDNIKVVTLC-GGTPMGPQIGSLEHGAHVVVGT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+ L++S ++ +VLDEAD M+D+GF ++I I+ + P+KR+ L+FSAT Sbjct: 131 PGRLHDHLSRNTLDLSTVETLVLDEADRMVDMGFYEEIVGIVAACPRKRQTLLFSATYPD 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + K+ V V + S + I+ + R + +L + + I FC Sbjct: 191 TIRKQSARFLKNPVEVKVESLH-DAGHIEQHFYKIQPERRVATVAALLGHFRPVSTIAFC 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ V L + F +AL GEL Q+ER L + V +ATDVAARG+D+ Sbjct: 250 NTKQQVRELANELQQQGFSALALYGELEQRERDEILVQFANRSCSVLVATDVAARGLDIS 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 LE VI+ +LS +PE +HR GRTGR G KG+++ ++ N +R Sbjct: 310 TLEAVINVDLSHDPEIHIHRIGRTGRGGEKGLALSLVGPNDSKR 353 >gi|205352662|ref|YP_002226463.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272443|emb|CAR37330.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627728|gb|EGE34071.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 457 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALLA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LEL+++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELLVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|163755350|ref|ZP_02162470.1| putative RNA helicase dead-box protein [Kordia algicida OT-1] gi|161324770|gb|EDP96099.1| putative RNA helicase dead-box protein [Kordia algicida OT-1] Length = 591 Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 197/363 (54%), Gaps = 9/363 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A+ + G+ + VQE + P L E D++ AQTG+GKT AFG L + A+ Sbjct: 16 AIQDMGFETPSEVQEKAI-PILLNEETDIVALAQTGTGKTAAFGFPLIQKINAD------ 68 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + L ++PTREL +Q+ EL+ + V GG S+ + R ++ GA IVV T Sbjct: 69 SRTTQGLILSPTRELCLQITNELKNYSKYENINVVAIYGGASITDQARQVKKGAQIVVAT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I + ++IS ++ VLDEADEML++GF +DI IL +P + +FSAT+ Sbjct: 129 PGRMQDMINRRMVDISKIEYCVLDEADEMLNMGFYEDITSILSHTPDDKSTWLFSATMPR 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + T+AK + + + S N + + V+ DR A+ + + ++VFC Sbjct: 189 EVATIAKKFMHTPQEITVGSRNSGSDSVRHEFYAVSGRDRYLALKRLADANPDIFSVVFC 248 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L E + A+ G+LSQ +R ++ R + ++ +ATDVAARGID+ Sbjct: 249 RTKRDTQNVAEKLIEDGYNAAAIHGDLSQNQRDLVMKSFRTRQIQMLVATDVAARGIDVD 308 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 D+ VI+ +L E HRSGRTGRAG+ G+S+ ++ ++ R+ + + R+ +P Sbjct: 309 DITHVINYQLPDEIETYTHRSGRTGRAGKNGVSMVIVTKSEMRKIKSIERKIQKKFEQKP 368 Query: 372 APS 374 P+ Sbjct: 369 IPT 371 >gi|315289076|gb|EFU48474.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3] Length = 432 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/365 (36%), Positives = 202/365 (55%), Gaps = 12/365 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ+A L L KDV V A+TGSGKT AFGL L + A + AL + P Sbjct: 1 MTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL DH++ Sbjct: 55 TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI ++ Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 VL E ++L G+L Q++R L +G ARV +ATDVAARG+D+ LELV++ E Sbjct: 233 CDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 L+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ +I Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTLPANSSIV 351 Query: 380 ERDAQ 384 +A+ Sbjct: 352 PLEAE 356 >gi|228918066|ref|ZP_04081594.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841546|gb|EEM86662.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 481 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYERPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEVYIGFAIPKANAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 419 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 183/337 (54%), Gaps = 6/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL------LAENDR 68 LSE GY + T +Q + L +D++ AQTG+GKT AF L + L L++ + Sbjct: 16 LSELGYSSPTPIQAHAIPVILAGQDIMAGAQTGTGKTAAFALPILQKLSECDVELSDTKQ 75 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL + PTRELA+QV + +G+ A+ GGVS+ + L+ G I+ Sbjct: 76 TVSLKPVRALVLTPTRELALQVNQSFAKYGKDSGLNTAIVYGGVSIDAQADALKAGVDIL 135 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+R L + L +V DEAD MLD+GF+D+I IL P KR+ L+FSAT Sbjct: 136 VATPGRLLDHLRRGSLTLKQLNFLVFDEADRMLDMGFKDEINAILKQVPSKRQTLLFSAT 195 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 P++ L+K Q+D + + N + ++ V + I ++++ + + Sbjct: 196 FDPSVFALSKRLQQDPKLIEVDKRNTLAAKVEQVVYAVDADRKSELICHLVKSKLWQQVL 255 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F + + + + A G+LSQ R ALQ + G +V +ATDVAARG+ Sbjct: 256 IFSRKKQGADNIAAKMVKAGIKAQAFHGDLSQAVREKALQQFKQGEIQVLVATDVAARGL 315 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ +L++V++ EL E+ +HR GRTGRAG G+++ Sbjct: 316 DVEELKVVVNYELPFIAEDYIHRIGRTGRAGNAGLAI 352 >gi|330830109|ref|YP_004393061.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565] gi|328805245|gb|AEB50444.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii B565] Length = 431 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 200/354 (56%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ A+S+ GY +T VQ+ + R +DVL SAQTG+GKT AF L + L+ Sbjct: 6 FDFAPEIL-RAVSDCGYQEMTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQRLV 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P++A + L + PTRELA QV + + +GG + + L+ Sbjct: 65 DNPAPVQPSNARV-LILTPTRELAAQVASNINDFAKYLDITTITIVGGGKQDVQAKKLKA 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHI+V TPGRL +H+ L++S ++ +V+DEAD +LD+GF D++ IL + K R+ L Sbjct: 124 GAHIIVATPGRLLEHLTACNLSLSGVECLVMDEADRILDMGFSADVQKILQAVNKTRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240 +FSAT S A+ LA N D R I S N+Q+S D + V + + ++ Sbjct: 184 LFSATFSDAVKKLA-NLMLD--RPQIVSVNKQNSTADTVSHTVYPVEQKRKRELLSELIG 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + +VF STR S + L + + GE +Q R AL+ +G+ RV +A Sbjct: 241 KQNWQQVLVFASTRESCDVLVEELNLDGIKSAVVHGEKAQGNRRRALREFMEGKVRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+PDLE V++ +L E+ +HR GRTGRAG++GM++ + + +R Sbjct: 301 TEVAARGLDIPDLEYVVNYDLPFLAEDYVHRIGRTGRAGKRGMAISFVSREEER 354 >gi|148378643|ref|YP_001253184.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC 3502] gi|153933936|ref|YP_001383027.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC 19397] gi|153937665|ref|YP_001386574.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall] gi|148288127|emb|CAL82195.1| putative ATP-dependent RNA helicase rhle [Clostridium botulinum A str. ATCC 3502] gi|152929980|gb|ABS35480.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC 19397] gi|152933579|gb|ABS39078.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall] Length = 425 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 189/345 (54%), Gaps = 2/345 (0%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I +AL E GY T +QE + L +D++ AQTG+GKT AF + + Sbjct: 2 LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVLQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L + AL +APTRELA+Q+G E + AV GGVS + + + Sbjct: 62 NLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G I++ TPGR+ D K +++ +++ VLDEAD MLD+G D++ I+ PK R Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKAR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ IT L + KD +RV + + I V + + ++L+ Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++A+VF +T+ + K L E + A+ G SQ R AL ++G+ RV +A Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TD+AARGID+ +L V + L PE +HR GRTGRAG KG+++ Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAI 346 >gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 580 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 199/360 (55%), Gaps = 6/360 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G T +QE + L +D++ AQTG+GKT AFGL L LLA+ R + L Sbjct: 42 GIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTT-RTL 100 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTREL Q+ L+ K+ + + V +GGVS+++++ L+ G I+V TPGRL D Sbjct: 101 ILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQLEKGTDILVATPGRLLDL 160 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I + + ++ ++ +VLDEAD+MLDLGF D+ I PKKR+ ++FSAT+ AI LA Sbjct: 161 INRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQTMLFSATMPKAIADLAG 220 Query: 199 NYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 Y D V+V + + ++ Y + +D+ + L + A+VF T+ Sbjct: 221 EYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLTENPDGRAMVFLRTKHGA 280 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + K L + V ++ G SQ +R AL+ RDG + IATDVAARGID+P + V Sbjct: 281 EKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVY 340 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWEPAPS 374 + +L P+ +HR GRT RAGR G+++ F P + R ERL +++V AP+ Sbjct: 341 NYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLM-GIDITVASGEAPA 399 >gi|157737778|ref|YP_001490462.1| ATP-dependent RNA helicase DbpA [Arcobacter butzleri RM4018] gi|157699632|gb|ABV67792.1| ATP-dependent RNA helicase DbpA [Arcobacter butzleri RM4018] Length = 454 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 206/368 (55%), Gaps = 11/368 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + L Y LT +QE + L+ KD++ A+TGSGKTVAF L + + L A+ Sbjct: 7 NLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIVNKLKAK 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + AL +APTRELA Q+ + L L + V+ +C GGV + LQ+ Sbjct: 67 EFKIQ------ALILAPTRELANQIAQNLRNLSRHIHNVKVLTLC-GGVPFKPQVVSLQH 119 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 AHIVV TPGR+ HI+ K +N+ ++ VLDEAD+MLD+GF DDI I+++ PK R+ + Sbjct: 120 NAHIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMGFYDDIMEIIENLPKNRQTM 179 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I T A N K+ + I+ E + I+ + V S++ I ++ ++ Sbjct: 180 LFSATYEKNIETFASNILKNPIYKEISDE--KEILINQKFYEVTPSEKTALIPALISHNQ 237 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AK ++FC+ + + + L + ++ L +L Q++R + + + + IATDV Sbjct: 238 AKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPILIATDV 297 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 A+RG+ + D++LVI+ +LS + + HR GRT RAG+ G+++ + +N + E + + Sbjct: 298 ASRGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEIIKEKF 357 Query: 364 NVSVVWEP 371 N + P Sbjct: 358 NNIKIENP 365 >gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella succinogenes DSM 1740] gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella succinogenes] Length = 505 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 130/418 (31%), Positives = 219/418 (52%), Gaps = 14/418 (3%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 D++ AQTG+GKT AFGL + L +ND + AL I PTRELAVQ+ E+ L Sbjct: 53 DLIAQAQTGTGKTAAFGLPIIQNL--KND-----GSIEALIITPTRELAVQISDEIFKLG 105 Query: 99 AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 GG ++ R+ L+ +++ TPGRL DH+R L + +VLDE+D Sbjct: 106 RNCRTKTVSVYGGQAIRRQVELLEKAPQVIIATPGRLLDHLRNDRLKNFNPTTIVLDESD 165 Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218 EMLD+GF DDIE I P R+ L+FSAT+ I LA+ + V + + +SD Sbjct: 166 EMLDMGFLDDIEEIFTYLPASRQTLLFSATMPAPIKNLAQKILHNPKMVKVTTNETTNSD 225 Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278 I R ++ +R++AIV ++ I+F + + L +Q AL G++ Sbjct: 226 ISQRYYIINEYEREDAIVRLIDSEAPSKTIIFTRMKKEADDLSNRLIAKGYQAGALHGDM 285 Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338 Q+ER A+ + G + +ATDVAARG+D+ ++ V + + NPE+ +HR GRTGRA Sbjct: 286 EQRERQAAVNAFKQGAIDILVATDVAARGLDISNVSHVFNYHIPLNPESYVHRIGRTGRA 345 Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQ 397 G+KG+++ + + R+ ++ P++ E +++ D+ +++Q+ L SI Sbjct: 346 GKKGIAITLATPLEFKEIRRISETTKATIELYEIPTIAETLKQTDS-KLIQN-LLNHSIT 403 Query: 398 GDEKKMVDVLLAKHDPEKIAAGFLR--IHRAGLCAPEEI--TPVSLVSGRDRFRDDSR 451 D ++ + + + D ++A L + ++ + P +I + L+ ++R D R Sbjct: 404 DDALRIYEQIRGEIDTTQLACKLLSMLMKKSSIMGPNKIGLSKEDLMQLKNRLSGDDR 461 >gi|240850330|ref|YP_002971723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella grahamii as4aup] gi|240267453|gb|ACS51041.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella grahamii as4aup] Length = 467 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 194/360 (53%), Gaps = 7/360 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T +Q + L+ KDVL AQTG+GKT +F L + + L E R + A Sbjct: 20 AVKSAGYTTPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARAR 76 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRE+A QV + + VA+ IGGVS + R L+ GA +++ TPG Sbjct: 77 MPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFELQDRKLERGADVLIATPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L + ++ +V+DEAD MLD+GF DIE I +P R+ L FSAT++P I Sbjct: 137 RLLDHCERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPEI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA--KNAIV 249 T L K + V V + + + I R V D V ++ GA +NAI+ Sbjct: 197 TKLTKQFLHSPVSVEVTKASSTATTITQRLVKSGSKSWDKRAVLRELIHNEGAELQNAII 256 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+ + +S + L H F V AL G++ Q R + L +D + + +A+DVAARG+D Sbjct: 257 FCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLTLLVASDVAARGLD 316 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 +P + V + ++ ++ E+ +HR GRTGRA R G + ++ + Q+ + +N + W Sbjct: 317 IPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQKYINAIEEMSNEKIEW 376 >gi|218900583|ref|YP_002448994.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9842] gi|218541686|gb|ACK94080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9842] Length = 481 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 122/371 (32%), Positives = 199/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCS 252 L++ Y + I + I++ + A+ D +++ ++ + I+FC Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEH-TLFEAIEDEKFSLLKDVTMIENPDSCIIFCR 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +V + L + + G + Q++R + R G+ R +ATDVAARGID+ + Sbjct: 251 TQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDN 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + Sbjct: 311 ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEDYIGFEIPKAIG 370 Query: 373 PSVEAIRERDA 383 PS E + + A Sbjct: 371 PSKEEVMKEKA 381 >gi|83647394|ref|YP_435829.1| ATP-dependent RNA helicase DbpA [Hahella chejuensis KCTC 2396] gi|83635437|gb|ABC31404.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396] Length = 493 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 202/366 (55%), Gaps = 7/366 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LS GY ++T +Q L L KDV+ +TGSGKT AFGL L + L + RF Sbjct: 50 LSTLGYHSMTPIQAQSLPSILAGKDVIAQGKTGSGKTAAFGLGLLNKL--DIKRFCVQ-- 105 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV +E+ L A + V GG+ + L++GAHIVVGTPG Sbjct: 106 --ALVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGAHIVVGTPG 163 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + L +VLDEAD ML++GF+ ++ I++ P +R+ L+FSAT I Sbjct: 164 RVEEHLRKGTLVLDQLHTLVLDEADRMLEMGFQAALDAIVEKMPAQRQTLLFSATYPNQI 223 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++A+ + V V + S + S Y + + R + +L + ++ +VFC+T Sbjct: 224 QSIAERVMLNPVMVKVESSHDNASIQQYYYKVEGDTHRLEVLRLLLLQYKPESTVVFCNT 283 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +L H F VAL G+L Q++R L + A + +ATDVAARG+D+ L Sbjct: 284 KRETQEVADMLVSHGFSAVALHGDLEQRDRDQTLVCFANKSASILVATDVAARGLDIDAL 343 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 + VI+ ++ +PE +HR GRTGRAG G++ + ++ + RL + V EPAP Sbjct: 344 DAVINFHIARDPEVHVHRIGRTGRAGASGVACTLFSESEMYKIGRLEEYQEIIVSAEPAP 403 Query: 374 SVEAIR 379 + ++ Sbjct: 404 ATSLLK 409 >gi|21219042|ref|NP_624821.1| DEAD-box RNA-helicase [Streptomyces coelicolor A3(2)] gi|5763955|emb|CAB53334.1| putative DEAD-box RNA-helicase [Streptomyces coelicolor A3(2)] Length = 439 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 201/371 (54%), Gaps = 5/371 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P V+ E ++ G +Q A L L +DVL A+TGSGKT+AFGLAL L Sbjct: 13 GLPPVLVETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLAL---LAGT 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R + PLAL + TRELA QV L GV + +GG+S++R+ + L++GA Sbjct: 70 AGRRAEPKRPLALVLVSTRELAQQVSDALAPYARALGVRLTTVVGGLSINRQTQALRDGA 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VV TPGRL D + + +++ ++ VLDEAD+M DLGF + ILD P + L+F Sbjct: 130 EVVVATPGRLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRLLF 189 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L +++ D V V++ + S +++ + V +D+ I G Sbjct: 190 SATLDGDVDQLVRDHLHDPVPVSVDPASASVSTMEHHVLTVHPADKYATATEIAARDG-- 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+A V RFT+ L AL SQ +R++ L +G V +AT+VAA Sbjct: 248 RVLMFLDTKAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVATNVAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + DL+LV++ + ++ ++ LHR GRT RAGR G V ++ + +R R+ EA + Sbjct: 308 RGIHVDDLDLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVNRMMSEAGI 367 Query: 366 SVVWEPAPSVE 376 P S E Sbjct: 368 RPTVTPVRSGE 378 >gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62] gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62] Length = 446 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 206/370 (55%), Gaps = 8/370 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+++ + L+++G + T +Q + + +DV+ AQTG+GKT AFGL + L+ Sbjct: 9 MPRLV-KKLADQGITDPTPIQAQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMIDALMRAG 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P + L +APTRELA Q+ L + + VA+ +GG + + + L+ G Sbjct: 68 VKPEPKTV-RGLILAPTRELAKQISDNLRDYTQGSHLKVALVVGGAGIVAQMKRLERGVD 126 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL D + K L++S +VLDEAD+MLDLGF + I R+ ++FS Sbjct: 127 LLVATPGRLIDLLDRKALSLSETHYLVLDEADQMLDLGFIHALRKIAPLLADDRQTMLFS 186 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + LA Y + VRV + + I+ +A S++ ++ +L H + Sbjct: 187 ATMPKQMNELAAAYLRSPVRVEVNPPGKAADKIEQSLHYIAKSEKPKLLIELLGKHKGER 246 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF T+ + K L + F V++ G SQ +R A+ R+G+ V +ATDVAAR Sbjct: 247 AIVFGRTKHGCEKLYKTLEKAGFDAVSIHGNKSQGQRERAIVAFREGKVTVLVATDVAAR 306 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM-QRRAERLFREAN 364 G+D+PD++ V + +L + PEN +HR GRT RAG +GM++ F P M + R+ + + + Sbjct: 307 GLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGAEGMAIAFCAPDEMSELRSIQKVMKMD 366 Query: 365 VSV----VWE 370 + V VWE Sbjct: 367 IPVASGRVWE 376 >gi|54294961|ref|YP_127376.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Lens] gi|53754793|emb|CAH16280.1| hypothetical protein lpl2040 [Legionella pneumophila str. Lens] Length = 468 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/356 (36%), Positives = 208/356 (58%), Gaps = 12/356 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F P Q + ++L+ Y N+T +Q L LR +D++ A+TGSGKT AF L+L + Sbjct: 13 FSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLLNN 72 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 L + S A AL + PTRELA QV + + L V + + GG+ + + Sbjct: 73 L-----KIS-FFAVQALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDS 126 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++GAHI+VGTPGR+ H++ L++S +KA++LDEAD MLD+GF DDI+ I+ PK+R Sbjct: 127 LRHGAHIIVGTPGRILKHLKNTSLDLSQVKALILDEADRMLDMGFFDDIKNIISVCPKQR 186 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239 + L+FSAT I L+K + KD V++ + + DI+ V+ + ++ ++L Sbjct: 187 QTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEE-IDIEQHFYEVSRHAQKFPLLKSLL 245 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 ++ + ++FC+T+ T L F +AL+G++ Q ER A+ + + + Sbjct: 246 LHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANKSCSILV 305 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ATDVAARG+D+ +L VI+ +L+ + + +HR GRTGRAG KG+++ V P + QR Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQR 361 >gi|289548721|ref|YP_003473709.1| DEAD/DEAH box helicase [Thermocrinis albus DSM 14484] gi|289182338|gb|ADC89582.1| DEAD/DEAH box helicase domain protein [Thermocrinis albus DSM 14484] Length = 365 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/352 (36%), Positives = 202/352 (57%), Gaps = 12/352 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + + + ++++E G+ + T +Q + L D+L A TG+GKT AFG+ + L Sbjct: 5 FSQLSEPLRKSITEMGFQHPTPIQREAIPLALAGYDLLGQAATGTGKTAAFGIPILEKL- 63 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + D AL + PTRELA+QV +L L G+ V GG SV ++ + L Sbjct: 64 GKEDLLG------ALILTPTRELALQVKDQLFQLARYKGLRVFAFYGGTSVAKDIQVLST 117 Query: 124 -GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 H+VVGTPGR+ D I G+G +++ ++ VLDEAD MLD+GF +DIE+I+ P +R+ Sbjct: 118 VPPHVVVGTPGRIKDLI-GRGYISLEKVRFFVLDEADLMLDMGFIEDIEYIVSHLPNRRQ 176 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILR 240 MFSAT+ + LAK Y ++ RV I+ R + L + + + + + ILR Sbjct: 177 TFMFSATLPRQVEELAKRYLREHYRVVKVYTPELRPKIEERLIRLSSSAQKLSELEKILR 236 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H + IVF T+ +VL F VAL G+++Q++R +AL++ RDG+ ++ +A Sbjct: 237 EHLLEKVIVFVKTKKDAKDLHEVLRRKGFNAVALHGDMTQRQRESALKLFRDGKVKIVVA 296 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 TDVA+RG+D+ + LVI+ L +PE +HR GRTGR G G + FV P++ Sbjct: 297 TDVASRGLDIKGVGLVINYHLPEDPEIYIHRIGRTGRIGSYGKAYSFVTPED 348 >gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516] gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516] Length = 477 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 122/354 (34%), Positives = 194/354 (54%), Gaps = 14/354 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +QE + P L +DVL AQTG+GKT +F L + + L Sbjct: 11 PKVL-KAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLHRGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + T + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDQLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD------NAIVNIL-- 239 T++P I + + + RV +A + I V+ S +D A++ + Sbjct: 187 TMAPEIERITNTFLSNPERVEVARQASASETIAQHVVVFRPSRKDREGSEKRAVLRAMIE 246 Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 +N I+FC+ + V K + ++ + + G+L Q R L RDG R Sbjct: 247 SEGENCRNGIIFCNRKVDVDVVAKSMKKNGYDAAPIHGDLDQSTRMRTLDGFRDGTLRFL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351 +A+DVAARG+D+P++ V + ++ S+ E+ +HR GRTGRAGR+G ++ + +P++ Sbjct: 307 VASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGREGRAMMISVPRD 360 >gi|152999828|ref|YP_001365509.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|151364446|gb|ABS07446.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] Length = 411 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 125/344 (36%), Positives = 191/344 (55%), Gaps = 12/344 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--- 71 L+ GY + T +Q + L ++DV+ A TG+GKT AF L + LLA SP Sbjct: 16 LASLGYESPTPIQLEAIPTILAKRDVMAGAHTGTGKTAAFALPILHHLLA----LSPLQE 71 Query: 72 --ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P+ AL + PTRELAVQV + T + V + GGVS+ + G ++ Sbjct: 72 LTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNAGIDVL 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH+R L++ L +V DEAD MLD+GF D+I+ +L P R+ L+FSAT Sbjct: 132 IATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTLLFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247 + AI +L+K +D + +A N ++I+ + V +DR +V +++R Sbjct: 192 LDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIE-QVVYAVDADRKTELVSHLVRSKNWHQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++F T+ V + + L + A G+LSQ R LQ + G+ +V +ATDVAARG Sbjct: 251 LIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +D+ +L+ VI+ EL E+ +HR GRTGRAG G+++ + Q Sbjct: 311 LDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQE 354 >gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] Length = 527 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 154/521 (29%), Positives = 256/521 (49%), Gaps = 40/521 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ G+ + +Q + L D++ AQTG+GKT+AFG + S + Sbjct: 10 NLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVLSQI-ES 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +D+ S AL + PTRELA+QV EL + + GG + R+ + L+ G Sbjct: 69 SDKIS------ALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRRGV 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHI+ L++S + +VLDE+DEML++GF DDIE I+ S K R+ L+F Sbjct: 123 DVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTLLF 182 Query: 186 SATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT+ I LA Y K+ V+ + I + I V DR ++ IL Sbjct: 183 SATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRILDIDEP 242 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +AI+FC T+ V + + + V + G++ Q +R N L+ ++G +ATDVA Sbjct: 243 SSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATDVA 302 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ D+ VI+ +L + E+ +HR GRTGRA ++G++ ++ ++L + Sbjct: 303 ARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQLEKFTK 362 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDVLLAKHDPEK---IAAGF 420 + + P+++ I E +L+D +++ Q D K + V D +AA Sbjct: 363 SKIKRKEIPTLDEIFEAKYNSMLKD--VKNTLEQNDYKDFIPVATGLDDDYNLVDVAAAL 420 Query: 421 LRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478 +++ R E +PV + K F LSVG K Sbjct: 421 MKMLFDREFNFDYNEDSPVK-----------------------STKPVRLF-LSVGRIDK 456 Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519 ++ L +S I+ +G I + TF+++ D +D Sbjct: 457 VTPVKILNFLEETSDIDVNEVGDIDIFDKFTFIDLPEDLLD 497 >gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens] gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens] Length = 633 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 152/457 (33%), Positives = 241/457 (52%), Gaps = 32/457 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65 I I ++L ERG L +Q + +DV+ A+TG+GKT++F L + L+ + Sbjct: 59 ISSAIADSLKERGITYLFPIQAQTFDYVYDGQDVIGQARTGTGKTLSFALPITEKLIKKK 118 Query: 66 --NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122 +D+ P P L +APTRELA+Q+ E + L +G + VCI GGV + L+ Sbjct: 119 RSDDKIRP---PKVLVLAPTRELAIQITSEFKAL---SGSLKVVCIYGGVPYAEQENHLR 172 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR- 181 NG IV+GTPGR+ DHI K L +S LK VVLDE D MLD+GF D +E IL + K R Sbjct: 173 NGIDIVIGTPGRIKDHIDRKNLVLSKLKHVVLDEVDRMLDMGFCDIVEEILSHAYVKDRH 232 Query: 182 --MLMFSATISP-AITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236 L+FSAT+ A+ T+ K + D V++ ++ R + ++++ + +R I Sbjct: 233 PQTLLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKVISCPYHERAATIG 292 Query: 237 NILRYHGAKNA--IVFCSTRASVSRF--TKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 ++++ +G +A I+F T+ + + VL + +V L G++ Q +R L+ R+ Sbjct: 293 DLVKVYGGDHARTIIFSPTKKEANELALSSVLKQ---EVQVLHGDIQQAQREVTLKGFRE 349 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 G +ATDVAARG+D+P+++LVI E + + +HRSGRTGRA R G+ + Sbjct: 350 GNFPCLVATDVAARGLDIPEVDLVIQCEPPKDADTYIHRSGRTGRANRTGICITFYKPTH 409 Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLA 409 Q R + + EA ++ AP + I + RDA + LDS+ + + + + Sbjct: 410 QDRIKSIESEAGINFCRIGAPQLGDIIQATSRDAAK------SLDSVPAEVLVHFESIAS 463 Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF 446 + K A L A + IT SL+S R+ F Sbjct: 464 EIIETKGAVKALSAALAHISGYTSITNRSLLSSREGF 500 >gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4] gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4] Length = 499 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/352 (36%), Positives = 190/352 (53%), Gaps = 12/352 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL+ERG + ++QE L L D++ A+TG GKT FG+ L + Sbjct: 26 PEIV-TALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRISTGEA 84 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELE----WLYAKTG-----VVVAVCIGGVSVHRER 118 P AL I PTREL +QV ++L+ L A TG + V GG ++ Sbjct: 85 TRELDGTPRALVIVPTRELCLQVTQDLKIAATGLTASTGSGTRPLKVLAIYGGTPYEQQT 144 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ G +VVGTPGRL D L + ++A+VLDEADEMLDLGF DIE +L P+ Sbjct: 145 EALEKGVDVVVGTPGRLLDLANQSKLVLGKVEALVLDEADEMLDLGFHPDIEKLLRMVPE 204 Query: 179 KRRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 KR+ ++FSAT+ I TLA+ + + +R A H + D+ + Sbjct: 205 KRQTMLFSATMPGPIITLARTFLTKPTHIRAEAADSGATHENTTQHVYRAHSLDKPEVVA 264 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 IL+ G ++FC T+ + + LAE F+V A+ G+L Q R +L+ R G Sbjct: 265 RILQAEGRGATMIFCRTKRTAQKLADDLAERGFRVGAIHGDLGQGAREKSLKAFRSGDVD 324 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V +ATDVAARGID+ D+ VI+ + + + +HR GRTGRAGR G++V ++ Sbjct: 325 VLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLV 376 >gi|17228718|ref|NP_485266.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120] gi|17130570|dbj|BAB73180.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120] Length = 513 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 194/360 (53%), Gaps = 11/360 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L + G+ T++Q + L +DV+ +QTG+GKT AF L + +R P Sbjct: 16 EHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL-------ERLDPQ 68 Query: 73 S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A A+ + PTRELA+QV + +G+ GG S+ R+ L+ G HIVVGT Sbjct: 69 QKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKRGVHIVVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D + L + +K VLDEADEML +GF DD+E IL +P+ R+ +FSAT+ P Sbjct: 129 PGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALFSATMPP 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250 +I L + + V V + + I+ A L+ + A+ IL + A++F Sbjct: 189 SIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMEDPETALIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR + + T L V G+LSQQ R L R + R +ATD+AARG+D+ Sbjct: 249 VRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAARGLDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L VI+ +L + E +HR GRTGRAG++G ++ ++ Q +RR +++F E +V W+ Sbjct: 309 DQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLV-QPFERRKQQIF-ERHVRQNWQ 366 >gi|229087937|ref|ZP_04220048.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44] gi|228695405|gb|EEL48279.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44] Length = 481 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 122/375 (32%), Positives = 200/375 (53%), Gaps = 16/375 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ Y T VQ ++ L KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTSLKYEQPTEVQGKVIPIALERKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV ++ + + G R++ +L+ HIVVGTPG Sbjct: 73 -PQALILTPTRELAAQVKEDITNIGRFKRIKATAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI ++ LK +V+DEADEML++GF D +E I+D P R ++FSAT+ + Sbjct: 132 RVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + + + I + I++R + V ++ + + +I + I+FC T Sbjct: 192 ENLSRTYMESPINIEITASGITTDKIEHRILEVREEEKFSLLKDITTVESPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + L G + Q++R + + G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFRQLKRSSYPCDKLHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE-- 370 VI+ ++ E+ +HR+GRTGRAG G ++ F+ P ER E + +E Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYE-----ERFLAEIEEYIGFEIQ 366 Query: 371 --PAPSVEAIRERDA 383 APS E++ ++ A Sbjct: 367 KIEAPSKESVVKKKA 381 >gi|307545623|ref|YP_003898102.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581] gi|307217647|emb|CBV42917.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581] Length = 474 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 197/344 (57%), Gaps = 5/344 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + A+ +G+ T +Q L L DV+ AQTG+GKT AF +++ + L E Sbjct: 100 DLPLPLMRAIHAQGFEYCTPIQAEALTHTLLGGDVVGKAQTGTGKTAAFLISILAYFLEE 159 Query: 66 N--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 D P AP AL +APTRELA+Q+ ++ + L T + VA +GG+ ++R L Sbjct: 160 EAPDGQKPG-APRALIVAPTRELALQIEKDAKALARFTNLNVASVVGGMDYQKQRDGLGK 218 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RR 181 ++V TPGRL D + + ++++ ++ +VLDEAD ML +GF D++ I+ +PKK R+ Sbjct: 219 KLDLLVATPGRLLDFHQKRDVDLTQVEVLVLDEADRMLSMGFIPDVKRIIRHTPKKEERQ 278 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT + I LA + + V+I +DID R LV+ D++ +V +L+ Sbjct: 279 TFLFSATFTDDILNLAGQWTHEPAHVDIEVTVDNAADIDQRVYLVSDDDKERLLVKLLQQ 338 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +VF + R V + +L + V LSG++ Q +R L+ R+G +V +AT Sbjct: 339 ESFDRVMVFGNRRDLVRKLDGLLRKADINVAMLSGDVPQNQRIRTLEQFREGEIQVLVAT 398 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DVA RGI + D+ VI+ L +PE+ +HR GRTGRAG KG+S+ Sbjct: 399 DVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSI 442 >gi|332285792|ref|YP_004417703.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7] gi|330429745|gb|AEC21079.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7] Length = 550 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 215/389 (55%), Gaps = 23/389 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + G+ TSVQ A + L D++VS+QTGSGKT AF L + + N + S Sbjct: 15 AVLKAGFTEPTSVQAAAIPKALAGHDLMVSSQTGSGKTAAFMLPALNRI--SNMPPNKGS 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA+QV + A + AV +GG+ + + L ++V TP Sbjct: 73 GVQVLVLTPTRELAMQVAEATKQYGAHLKDLRTAVVVGGMPYGAQLKALSRRVDVLVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ K +N+S + +VLDEAD MLD+GF +DIE I+ +P R+ L+FSAT+ Sbjct: 133 GRLIDHLQAKRVNLSTVHTLVLDEADRMLDMGFIEDIETIVGRTPSDRQTLLFSATLDGT 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-----IVNILRYHGAKNA 247 I LA +D +++ I+ + ++H++I +++L A DN + ++LR A Sbjct: 193 IARLAAKMMRDPLQIEISGQKQKHTNI-TQSLLYA---DDNGHKMRLLDHLLRDSNLDQA 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF ST+ LA+ F AL G+++Q++R+ L M++ G+ R+ +ATDVAARG Sbjct: 249 IVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGMLQKGKLRILVATDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 ID+ + ++ +L E+ +HR GRTGRAGR G++ + + + + R+ Sbjct: 309 IDVQGISHAVNYDLPMQAEDYVHRIGRTGRAGRSGLAYTLATHSERHKVRRI-----EHF 363 Query: 368 VWEPAPS--VEAIRERDAQRILQDPLFLD 394 + +P P+ +E + + R P + D Sbjct: 364 IGQPIPAEVIEGLEPKKTAR----PTYTD 388 >gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2] gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2] Length = 463 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 116/324 (35%), Positives = 186/324 (57%), Gaps = 9/324 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIAP 82 T +QE + + +D++ AQTG+GKT AF L + ++ P + + AL + P Sbjct: 26 TPIQEQAIPAVMEGRDIIAQAQTGTGKTFAFILPIL-------EKLDPDAVHIQALIVTP 78 Query: 83 TRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 TRELA+Q+ E++ L A + V GG V ++ L+ IVVGTPGRL DHI+ Sbjct: 79 TRELALQITDEVQKLTAGDDDLEVLAVYGGQDVDKQLNKLKKKVQIVVGTPGRLLDHIKR 138 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201 K +++S +VLDEAD+ML +GF D++E I+ +P KR+ ++FSATI I LA+ + Sbjct: 139 KTIDLSQADFLVLDEADQMLHIGFLDEVEDIIKETPGKRQTMLFSATIPAEIRNLARKHM 198 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 K+ + I + A+ + ++ +++ H A++FC T+ VS+ Sbjct: 199 KEPEYMQIEKTQGPAQSVKQIAIHTIDRAKQATLMQLIQTHRPYLAVIFCRTKRRVSKLN 258 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 VL + FQ L G+LSQ +R ++ RD ++ +ATDVAARG+D+ + V + ++ Sbjct: 259 DVLKSNGFQCDELHGDLSQSKREQVMKRFRDAELQLLVATDVAARGLDVEGVTHVFNYDI 318 Query: 322 SSNPENLLHRSGRTGRAGRKGMSV 345 +PE+ +HR GRTGRAG KGM++ Sbjct: 319 PLDPESYVHRIGRTGRAGMKGMAI 342 >gi|255013213|ref|ZP_05285339.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7] Length = 587 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 12/333 (3%) Query: 19 GYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76 GY + VQE ++ P L + DV+ AQTG+GKT A+GL + + P Sbjct: 2 GYESPMPVQEEVI-PFLLGEDNDVIALAQTGTGKTAAYGLPILQKINVSQ------YQPQ 54 Query: 77 ALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL + PTREL +Q+ +L Y+K + V GG S+ + + L+ G H+VV TPGR Sbjct: 55 ALILCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSIESQIKTLKRGVHVVVATPGR 113 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D + K +++S++K V+LDEADEML++GF D I IL + P+ R ML+FSAT+ I Sbjct: 114 LIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNMLLFSATMPKEIA 173 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 ++ K Y KD + I +N + +I +V D+ A+ + Y+ I+FC TR Sbjct: 174 SITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLALKRLADYYPNIYGIIFCRTR 233 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 L + + +L GELSQ +R +Q R ++ +ATDVAARG+D+ DL Sbjct: 234 KETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLVATDVAARGLDVDDLT 293 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 VI+ L E+ HR GRTGRAG+ G+++ + Sbjct: 294 HVINYGLPDEVESYTHRRGRTGRAGKTGIAISI 326 >gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus UPII 345-E] gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus UPII 345-E] Length = 491 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 201/347 (57%), Gaps = 15/347 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+++ G+ + +Q+ + ++ KD++ AQTG+GKT AFG+ + L D Sbjct: 14 IMKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPI----LQRIDTSK 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P P A+ ++PTRELA+Q E+ L + GG + R+ R L+ +I+V Sbjct: 70 PG--PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKKPNIIVA 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S+++ VLDE DEM+D+GF DDI I+ ++PK+R+ L FSAT+ Sbjct: 128 TPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLFFSATMP 187 Query: 191 PAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGAKN 246 I LA ++ + + V++ A+ + +Y + L DR +A+ +L + Sbjct: 188 APIRELANSFLNEPEIVKIKAATVTIDLIEQEY----IELPDRQKFDALCRLLDMQSPEL 243 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF T+ T+ L + + L G+LSQQ+R + ++ ++G +ATDVAAR Sbjct: 244 AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAAR 303 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNM 352 G+D+ + V + ++ +PE +HR GRTGRAG+ G+ + FVI + M Sbjct: 304 GLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREM 350 >gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium vinosum DSM 180] gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM 180] Length = 662 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 122/368 (33%), Positives = 201/368 (54%), Gaps = 12/368 (3%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 VI +A+ GY + T++Q + L +D+L AQTG+GKT AF L + S L + Sbjct: 19 VIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALPMLSRLDPD---- 74 Query: 70 SPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P L + PTRELA+QV + + G V GG + L+ ++ Sbjct: 75 --LRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKRNPQVI 132 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DHIR L + ++A+VLDEADEML++GF +DI++I D +P +R++ +FSAT Sbjct: 133 VGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQVALFSAT 192 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + PAI +A+ D V V IA+ + I+ +V + + + I+ + Sbjct: 193 MPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIMELEPFDGLL 252 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L H F L+G+++Q+ R ++ ++ G+ V +ATDVAARG+ Sbjct: 253 IFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVATDVAARGL 312 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + V++ ++ ++P +HR GRTGRAGR G ++ ++ ER ++ V+ Sbjct: 313 DVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPR-----ERGLLKSIERVI 367 Query: 369 WEPAPSVE 376 P PS+E Sbjct: 368 RRPIPSME 375 >gi|258405872|ref|YP_003198614.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257798099|gb|ACV69036.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense DSM 5692] Length = 497 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 130/385 (33%), Positives = 208/385 (54%), Gaps = 9/385 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E++ I EA G+ +L VQ + LR D++V ++TGSGKT AF LL Sbjct: 21 LEDLSPRIQEACRSAGWSSLAPVQARSIPVLLRGDDLMVQSRTGSGKTGAF-------LL 73 Query: 64 AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +R +P A AL + PTRELA QV E + L+ +G+ A GGV + L+ Sbjct: 74 PMLERLNPDQAACQALILVPTRELARQVHAEAQTLFKGSGLRTAAVFGGVGYKEQFDALR 133 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RR 181 GAH+VVGTPGR+ DH+ L+ +V+DEAD ML +GF D+ I P+ Sbjct: 134 EGAHVVVGTPGRILDHLLKGSFATKKLRILVMDEADRMLSMGFYQDMVQIRGYLPQSVES 193 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT + L+ + D ++++S+ ++I++ +V R+ +++ IL Y Sbjct: 194 SYLFSATFPSHVLRLSSQFLIDPGFLSLSSDTLNVAEIEHSYYVVPAVQRERSLLRILEY 253 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +A++FC+T++ V T VL L+ +L Q +R L ++ G R+ +AT Sbjct: 254 LNPVSALIFCNTKSDVQFVTTVLQRFGLDADQLTSDLRQNKRDQVLGRIKAGNLRLLVAT 313 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGID+PDL VI + S +PE +HR+GRTGRAG G +V ++ + + ++ + Sbjct: 314 DVAARGIDIPDLSHVIQYQPSEDPELYVHRAGRTGRAGASGEAVTLVAGMEKIKLNQVAK 373 Query: 362 EANVSVVWEPAPSVEAIRERDAQRI 386 + + + + PS E + + QR+ Sbjct: 374 KFRIPLQEQELPSEETVNDMVGQRL 398 >gi|269963221|ref|ZP_06177555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi 1DA3] gi|269832026|gb|EEZ86151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi 1DA3] Length = 421 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 122/345 (35%), Positives = 188/345 (54%), Gaps = 4/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q + + LS V T VQE + L KD+L +AQTG+GKT AFGL + T+ + Sbjct: 14 IEQQLVDTLSGMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQTVQQKK 73 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +P AL + PTRELA QV L A T + + GG S+ ++R L+ GA Sbjct: 74 RNGTPQ----ALILVPTRELAQQVMDNLTQYSANTDLKIVCVYGGTSIGVQKRKLEEGAD 129 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH+ +NIS +VLDEAD MLD+GF D++ IL P+ +++++FS Sbjct: 130 ILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPQDKQIMLFS 189 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I T+A V V ++ N + V + + ++ + Sbjct: 190 ATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 249 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ K L + V+++G+ SQ R AL ++G+ R IATDVAAR Sbjct: 250 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKEGKVRALIATDVAAR 309 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 G+D+ +LE V++ ++ E+ +HR GRTGRAG+ G++V ++ ++ Sbjct: 310 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRD 354 >gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 423 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 125/339 (36%), Positives = 180/339 (53%), Gaps = 1/339 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 LSE + TSVQE + L KDVL AQTG+GKT AFGL + L+ D P Sbjct: 20 TLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQRLIETKDNVIPNP 79 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA QV + T + V V GGVS+ + +L+ GA I+V TP Sbjct: 80 KLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTENLRGGADILVATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K + +SH + +VLDEAD MLD+GF DI+ IL + R+ L FSAT Sbjct: 140 GRLIDHMFTKNIMLSHTEVLVLDEADRMLDMGFMPDIKRILSRMNEVRQTLFFSATFDNK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + + +N + V S + + ++ + +VF Sbjct: 200 IKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSELLAYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ K L + +++G+ SQ R AL + G+ R IATDVAARGID+ Sbjct: 260 TKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGIDIQQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 LE V++ ++ E+ +HR GRTGRAG G+++ ++ Q+ Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGNSGLAISLMSQD 358 >gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1] Length = 470 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 199/370 (53%), Gaps = 25/370 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +Q + L+ KDVL AQTG+GKT +F L + + L E R + A Sbjct: 19 KAVRSAGYTAPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARA 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV + + V + IGGVS + R L+ GA +++ TP Sbjct: 76 RMPRTLILEPTRELAAQVQENFDKYGLNHRLNVVLLIGGVSFEDQNRKLEQGADVLIATP 135 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH RGK L I + +V+DEAD MLD+GF DIE I +P R+ L FSAT++P Sbjct: 136 GRLLDHFERGKLLLIG-TEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAP 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI------------DYRAVLVALSDRDNAIVNIL 239 IT L + + + V + + + I D RAVL L D + + Sbjct: 195 EITKLTEQFLHSPICVEVTKASSTATTITQRLVKSGSKAWDKRAVLRELIDNEGDEL--- 251 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 KNAI+FC+ + +S + L ++ F V AL G++ Q R N L +D + + + Sbjct: 252 -----KNAIIFCNRKKDISELFRSLTKYNFSVGALHGDMDQHSRMNTLADFKDNKLTLLV 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 A+DVAARG+D+PD+ V + ++ ++ E+ +HR GRTGRA R G + ++ + Q+ + Sbjct: 307 ASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTHDDQKYISAI 366 Query: 360 FREANVSVVW 369 + + + W Sbjct: 367 EKISKEKIEW 376 >gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10] Length = 566 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 135/392 (34%), Positives = 220/392 (56%), Gaps = 18/392 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ A+++ GY T +Q A + + DV+ AQTG+GKT AF + + S + A + Sbjct: 22 PSVL-RAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSKIDAAS- 79 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 +A AL +APTRELA+QV A + + I GG S + L+ GAH Sbjct: 80 -----TATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAH 134 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L++SH+ +VLDEADEML +GF ++++ IL +P+ +++ +FS Sbjct: 135 VVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFS 194 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ PAI L Y D + V+ ++ +I R + VA + +A+ +L + Sbjct: 195 ATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEA 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + + L F A++G++ Q +R + ++DG + +ATDVAAR Sbjct: 255 MIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAAR 314 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANV 365 G+D+ + V++ ++ + E+ +HR GRTGRAGR G + +FV P+ +R + +A Sbjct: 315 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPR--ERHLLKAIEKATR 372 Query: 366 SVVWEPA-PSVEAIRERDAQRILQDPLFLDSI 396 + E P+VE + +AQR+ + F DSI Sbjct: 373 QPLTEAELPTVEDV---NAQRVAK---FADSI 398 >gi|319783363|ref|YP_004142839.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 474 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 123/352 (34%), Positives = 193/352 (54%), Gaps = 4/352 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A G+ +Q + P + +D+ AQTGSGKT AF L + S ++A + P Sbjct: 29 KATHNAGFTEPKPIQAQAIPPQMEGRDIFGIAQTGSGKTAAFALPILSKIIALGTKRRPK 88 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +A AL +APTRELAVQ+ ++ L V A+ +GGVS + + + G I++ TP Sbjct: 89 TA-RALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAPGVDILIATP 147 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +R L ++ K +VLDE D MLD+GF +D++ I ++ R+ ++FSAT+ Sbjct: 148 GRLTDLVREGDLMLADTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQTVLFSATMPNE 207 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK K+ +RV +A ++ ++I V + + +L K+ I+F Sbjct: 208 IAELAKGLLKNPIRVEVAPQSTAAAEIVQGVVFARTKQKRQVLSTMLADETMKSVIIFSR 267 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R TK L F+ + G SQ R AL RDG R+ +ATD+AARGID+P Sbjct: 268 TKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILVATDIAARGIDVPG 327 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--PQNMQ-RRAERLFR 361 + V++ +L E+ +HR GRTGR G G+++ + +N + R+ ER+ R Sbjct: 328 ISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQVERIIR 379 >gi|254456111|ref|ZP_05069540.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp. HTCC7211] gi|207083113|gb|EDZ60539.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp. HTCC7211] Length = 536 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 195/348 (56%), Gaps = 12/348 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + + +L++ + T +Q + L KD+L +AQTG+GKT+AF + L + L+ + Sbjct: 9 IEESLKNSLNKMNFTKPTPIQGMAIPAALEGKDILGTAQTGTGKTLAFSIPLINKLILDK 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125 + F AL + PTRELA QV ++ + + K + A+ IGG S+ ++ R L N + Sbjct: 69 NAF-------ALVMCPTRELATQVMEAIKSIISDKINIKTALLIGGESMQKQLRQLGNRS 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH++ K LN+S K +VLDE D MLD+GF IE +L PK + L+F Sbjct: 122 RIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVLKFVPKDHQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGA 244 SAT+ I +++ Y R++ + + + I + V ++ D I L G+ Sbjct: 182 SATLPQNILRISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYDELIDQFLARKGS 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ S + K L E + G+L Q +R + R G R+ IATDVA Sbjct: 242 --ILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKRILIATDVA 299 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 ARG+D+P ++ VI+ +L PE+ +HR GRT RAG +G ++ F+ P + Sbjct: 300 ARGLDIPLIQHVINYDLPQVPEDYVHRIGRTARAGSEGSALTFLTPDD 347 >gi|238894460|ref|YP_002919194.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae NTUH-K2044] gi|238546776|dbj|BAH63127.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 457 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 203/366 (55%), Gaps = 10/366 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+++T VQ A L L KDV V A+TGSGKT AFGL L + + RF S Sbjct: 18 LNELGYLSMTPVQAAALPAILGRKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + TRELA QV EL L + + + GG +R LQ+ HI+V TPG Sbjct: 75 ---LVLCTTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ +++ L+ +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++ Q++ + I + + + I+ + V+ + + +L H + +VFC+T Sbjct: 192 AAISGRVQRNPQTIEIDTVDALPA-IEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L ++L G+L Q++R L +G RV +ATDVAARG+D+ L Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372 LV++ EL+ +PE +HR GRT RAG +G+++ F P+ Q RA L +S+ W PA Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369 Query: 373 PSVEAI 378 P+ I Sbjct: 370 PTGNTI 375 >gi|228988681|ref|ZP_04148767.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771132|gb|EEM19612.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 481 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 117/346 (33%), Positives = 191/346 (55%), Gaps = 6/346 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPIHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITSYEDRFLEEI 357 >gi|115757139|ref|XP_786173.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115973714|ref|XP_001179743.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 487 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 118/359 (32%), Positives = 197/359 (54%), Gaps = 10/359 (2%) Query: 5 ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64 + + V+ EA + + + +Q L L+ KDV+ A+TGSGKT AF L + LL Sbjct: 63 QGVVDVLCEACDKLKWKTPSKIQTEALPVALQGKDVIGLAETGSGKTGAFALPILQALLE 122 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 R AL + PTRELA Q+ + E L + GV V +GG+ + + L Sbjct: 123 TPQRL------FALVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKK 176 Query: 125 AHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 H+++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +I+ IL PK+RR Sbjct: 177 PHVMIATPGRLVDHLENTKGFNLRGLKYLVMDEADRILNMDFEAEIDKILKVIPKQRRTY 236 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 ++SAT++ + L + +D V+V ++++ + S + + + +D +V+IL Sbjct: 237 LYSATMTKKVAKLQRASLQDPVKVEVSTKYQTVSKLQQSYIFIPAKYKDCYLVSILNEFA 296 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VFCST + R +L + L G+LSQ +R L + + IATDV Sbjct: 297 GNSFMVFCSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFKSKSRSILIATDV 356 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERL 359 A+RG+D+P ++ VI+ ++ ++ ++ +HR GRT RAGR G ++ + Q + +R E+L Sbjct: 357 ASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQL 415 >gi|332971571|gb|EGK10521.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330] Length = 481 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/385 (34%), Positives = 205/385 (53%), Gaps = 17/385 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I AL GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 29 NLDKNILSALKSAGYDSPTPIQMQAIPAALDNRDIMASAQTGSGKTAAFLLPSLQKLTQR 88 Query: 66 NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRER 118 +++ +P L + PTRELA QV + ++WL + T +GG S ++ Sbjct: 89 SEK--SGKSPRVLVLTPTRELAAQVEKNAQIYSQNMKWLRSVT------LVGGSSFGQQI 140 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L ++V TPGRL DH+R ++ L+ +VLDEAD MLD+GF DDIE I+ ++P+ Sbjct: 141 KALSRPIDVIVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPE 200 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237 R+ L+FSAT A+ LA+ K+ + I E++Q I+ + + + N +++ Sbjct: 201 DRQTLLFSATWDGAVGKLARKLTKNPEVIEIEREDKQ-GKIEEQLLYCDDKNHKNRLLDH 259 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ILR ++F ST+A L E F L G++ Q R+ L +R GR ++ Sbjct: 260 ILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 319 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N Sbjct: 320 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAISFAEVNEYMAVH 379 Query: 358 RLFREANVSVVWEPAPSVEAIRERD 382 ++ R N + +E R+R+ Sbjct: 380 KIERYINHKLPEVVIEGLEPTRKRN 404 >gi|301165769|emb|CBW25341.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ] Length = 591 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 159/527 (30%), Positives = 266/527 (50%), Gaps = 27/527 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDV--LVSAQTGSGKTVAFGLALASTLL 63 +P+ + AL ++GY + T +QE + P L EKD + AQTG+GKT AF L L L Sbjct: 7 TLPESLLRALEDKGYKSPTDIQEKAI-PLLLEKDTDFVGQAQTGTGKTAAFSLPL----L 61 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 A+ D S + A+ ++PTRELA Q+ E++ + + GGV + + R L+ Sbjct: 62 AKID--SKSGDVQAIVLSPTRELANQITEEMKSFCKYEKIKILSVYGGVPLDGQIRTLKK 119 Query: 124 G-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VVGTPGR+ D I+ L + + K VLDEADEMLD+GF DD++ IL K++ Sbjct: 120 GRPQVVVGTPGRVLDLIKRGVLKLENAKLAVLDEADEMLDMGFIDDVKTILSELGDKKKT 179 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 M+SAT+ AI +L K+Y + + I + + DI+ + L+ + A+ IL Sbjct: 180 WMYSATMPKAILSLIKSYLNEPEVIKIEKKTLSNEDIEQKYFLIKRGNLGEAVCRILDSL 239 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVFC T+ + + F AL G++SQ +R ++ + + ++ + TD Sbjct: 240 TDYYGIVFCRTKIDAKKLSDEFNYRGFPSDALHGDMSQTQRDLTMRAFKKKKVKLLVCTD 299 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ +L VI+ L + E+ +HR GRTGRAG+KG + VI + + R L R Sbjct: 300 VAARGIDVDNLTHVINYGLPQDLESYVHRIGRTGRAGQKGCAYTVIDSSEKFRIRMLERL 359 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDEKKMVDVLLAKHDPEK------ 415 N + PS++ I++ + + F+ + ++ E + K E+ Sbjct: 360 MNTKIELGTLPSIDEIKKALVKNEVSKLEFVAEKLESSENLDSSFSIFKESLEEMEKEAL 419 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDR----FRDDS----RAFKVGGGSRDNFKGSS 467 + F + + + + + + L G +R R++S R + G G DN G + Sbjct: 420 LKVMFNYMFKKNMDRYSQKSSIELSKGSERGDRNSRNNSDRRERPERSGRGRGDN--GYA 477 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 F + VG K + + + + ++G+ + I + ++ +F EVS Sbjct: 478 RFYVGVGKKHGVDLKEFLSSVSGATGVAERDIRRVDLKDQFSFFEVS 524 >gi|254249351|ref|ZP_04942671.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia PC184] gi|124875852|gb|EAY65842.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia PC184] Length = 436 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 8/350 (2%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T +Q A L L +D++ A+TGSGKT AF LAL + L A + A+ + P Sbjct: 1 MTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDARSFDVQ------AMILCP 54 Query: 83 TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 TRELA QV +E+ L A+ V V GG + + + L++GAHIVVGTPGR+ DH+ Sbjct: 55 TRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPGRIMDHLDR 114 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201 L + L +VLDEAD MLD+GF DDI + P R+ L+FSAT I L++ + Sbjct: 115 GNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGIAKLSQQFL 174 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 ++ + +A E S I R V +R +A+ +L ++ + I FC+T+ Sbjct: 175 RNPKEIKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLL 233 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 VL F +AL GEL Q+ER L + V +ATDVAARG+D+ LE VI+ ++ Sbjct: 234 DVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293 Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + +PE +HR GRTGRA + G ++ ++ + R + + V W P Sbjct: 294 TPDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIEQAQKREVEWHP 343 >gi|90578403|ref|ZP_01234214.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14] gi|90441489|gb|EAS66669.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14] Length = 461 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 200/379 (52%), Gaps = 16/379 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q L L KDV+ +TGSGKT AFGL L L + R Sbjct: 19 LTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQNLKVKRFRVQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A + V GG + L++GAHI+VGTPG Sbjct: 75 --TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + L +VLDEAD ML++GF+D ++ I D +P R+ L+FSAT I Sbjct: 133 RVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAITDVAPSDRQTLLFSATYPTQI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++AK ++ V V + S + S + + + DR A+ +L H ++ ++FC+T Sbjct: 193 ASIAKRIMRNPVEVKVESNHDNSSISQHFYKVESNDDRLRAVRLLLSQHRPESCVIFCNT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L ++ F +AL G+L Q+ER L + + + +ATDVAARG+D+ +L Sbjct: 253 KREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 + VI+ L+ + E +HR GRTGRAG KG++ + + L + + E P Sbjct: 313 DAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLEDYLDRPISGEALP 372 Query: 374 SVEAIRERDAQRILQDPLF 392 A+ +L P F Sbjct: 373 ---------AEHLLDQPTF 382 >gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 422 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 204/366 (55%), Gaps = 14/366 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ + T +Q + P L KD++ +AQTG+GKT+AF L L E + Sbjct: 17 LAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPTIQLLSTEPRQ----PG 72 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL + PTRELA+Q+ L + TG+ AV +GG++ + RD++ GA+IVV TPGR Sbjct: 73 VRALILTPTRELALQINEALLQIARGTGIRAAVAVGGLNERSQLRDIRGGANIVVATPGR 132 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D + +N++ ++ ++LDE+D MLD+GF I+ I+ + P +R+ L+FSAT+ ++ Sbjct: 133 LYDFMSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAERQTLLFSATLESSVK 192 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 L + + ++AVR+ + S ++ +D V DR ++ ++ + +VF T+ Sbjct: 193 QLVETHVRNAVRIELGSISKPSEQVDLHLYEVD-QDRKFGLLEMMLREEQGSFLVFARTK 251 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 + K LA+ F+ A+ G+ SQ +R AL+ ++G RV +ATDVAARGI + + Sbjct: 252 HGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYYRVLVATDVAARGIHVEGIS 311 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQR--RAERLF------REANV 365 V++ +L PE+ +HR GRTGRAG KG S F R ER RE + Sbjct: 312 HVVNFDLPQVPEDFIHRVGRTGRAGAKGTASTFATRSERSEIGRIERTLSVKLKRREVSA 371 Query: 366 SVVWEP 371 S+V P Sbjct: 372 SIVAAP 377 >gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum 255-15] Length = 530 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 134/441 (30%), Positives = 232/441 (52%), Gaps = 18/441 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + + + G+ T +Q + L D++ AQTG+GKT AFG+ L A+ Sbjct: 8 NLSEALIKGVLKMGFEEATPIQAETIPVGLSGVDLIGQAQTGTGKTAAFGIPTIERLDAK 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL +APTRELA+QV EL + V GG + R+ R L+ Sbjct: 68 SRYIQ------ALILAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQIRALRKNP 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL DH+ K LN+ H++ V+LDEADEML++GF +DIE IL + P R+ L+F Sbjct: 122 QIVVATPGRLMDHMNRKTLNLDHVQTVILDEADEMLNMGFVEDIEKILGTLPPTRQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P I +A + + + ++ +ID + + S + + + ++ + Sbjct: 182 SATMPPQIRKIADRFMTTPTHIKVKAKEMTVENIDQSFIELKESQKFDVLCRLIDTDSPE 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +I+F T+ V T+ L + + L G+L+Q +R ++ + G + +ATDVAA Sbjct: 242 LSIIFGRTKKRVDEMTEGLIQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVATDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ + V + ++ +PE+ +HR GRTGRAG+ G ++ FV P+ + + + R N Sbjct: 302 RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFG-QIKTIERVTN 360 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEKIAAGF 420 + AP+++ I E + + Q+ + ++ + + LL +++ ++ A Sbjct: 361 KKMSRRHAPTLDEILEGNLKLAAQE--LIKRVEAKNSQEYTTLAQELLEEYEAVELIAAA 418 Query: 421 LRIHRAGLCAPEEITPVSLVS 441 L+ GL + TPV + S Sbjct: 419 LK----GLTKEPDATPVQISS 435 >gi|307319802|ref|ZP_07599226.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83] gi|306894533|gb|EFN25295.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83] Length = 504 Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 200/367 (54%), Gaps = 6/367 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LS G+ T +Q + L++ D++ AQTG+GKT AFGL + L+A+ R P + Sbjct: 17 LSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEKLVADGRRPDPRNI 76 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL +APTREL Q+ L+ K+ + + + +GGVS++++ L G I+V TPGR Sbjct: 77 -RALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLARGVDILVATPGR 135 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D + K + ++ + +VLDEAD+MLDLGF D+ I PK R+ L+FSAT+ I Sbjct: 136 LLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIA 195 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253 LA Y D V+V ++ + ++ V D I+ L + +++F T Sbjct: 196 ELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + K L F+ ++ G SQ +R AL+ RDG RV +ATDVAARGID+P + Sbjct: 256 KHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGV 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370 V + +L P+ +HR GRT R GR G+++ F P ++ R E+L ++V Sbjct: 316 THVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEKLM-GIQIAVASG 374 Query: 371 PAPSVEA 377 AP+ +A Sbjct: 375 EAPADQA 381 >gi|226357411|ref|YP_002787150.1| ATP-independent RNA helicase [Deinococcus deserti VCD115] gi|226319401|gb|ACO47396.1| putative ATP-independent RNA helicase [Deinococcus deserti VCD115] Length = 469 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 194/359 (54%), Gaps = 14/359 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY +T++Q+ L L+ +D+L A+TGSGKTVAFG+ + R PA Sbjct: 19 LDTLGYREMTTIQQRSLPHVLKGRDLLAQAETGSGKTVAFGIGILH-------RLDPARL 71 Query: 75 PL-ALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + L + PTRELA QV EL L G + V GGV + + L++G HIVVGTP Sbjct: 72 KVQGLVLCPTRELADQVANELRRLARGEGNIKVLTLTGGVPLRHQVTSLEHGVHIVVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ +N+ + +VLDEAD M D+GF D++ I+ + P+ R+ L+FSAT Sbjct: 132 GRIRDHLARGSINLEDVHTLVLDEADRMTDMGFYDEMASIVCACPRTRQTLLFSATYPDN 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNILRYHGAKNAIVF 250 I + D V V + + QH+ + + + +RD AI +L + + +VF Sbjct: 192 IKQTTAEFLNDPVEVVV---DAQHTATQIKQLFYEIGFDERDAAIGRLLNHFKPLSTLVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR + L F + L G+L Q+ER L + + V +ATDVAARG+D+ Sbjct: 249 CNTRVHCRELAEELQAQGFSALGLHGDLEQRERDEILVLFSNRSCSVLVATDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 L+ V++A++S + E +HR GRTGRAG G+++ + N ++ + +V W Sbjct: 309 SRLDAVMNADVSRDTEVHVHRVGRTGRAGEAGLALTLCSPNEKKWVSLIEDYQKTTVQW 367 >gi|228968588|ref|ZP_04129573.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar sotto str. T04001] gi|228791080|gb|EEM38697.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar sotto str. T04001] Length = 481 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 191/338 (56%), Gaps = 9/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCS 252 L++ Y + I + I++ + A+ D +++ ++ + I+FC Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEH-TLFEAIEDEKFSLLKDVTMIENPDSCIIFCR 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +V + L + + G + Q++R + R G+ R +ATDVAARGID+ + Sbjct: 251 TQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDN 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 + VI+ ++ E+ +HR+GRTGRAG G ++ F+ P Sbjct: 311 ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITP 348 >gi|71906768|ref|YP_284355.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB] gi|71846389|gb|AAZ45885.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB] Length = 466 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ Y+++T +Q A L L D++ A+TGSGKT AFGLAL + L RF A Sbjct: 24 LAQLEYLSMTPIQAASLPLALAGNDLIAQAKTGSGKTAAFGLALLNRL--NTSRF----A 77 Query: 75 PLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L + + V +GG ++ + L+ G HIVVGTPG Sbjct: 78 VQAMVLCPTRELADQVTQEIRRLARFEENIKVLSLVGGSTLRNQANSLEKGVHIVVGTPG 137 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + L +VLDEAD MLD+GF DDI ++ P +R+ L+FSAT I Sbjct: 138 RIMDHMERGYLKLDELNTLVLDEADRMLDMGFHDDIAYVAKRCPAQRQTLLFSATYPEGI 197 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + V + E + + I R V +R +A+V +L+++ + + FC+T Sbjct: 198 ALLARQFLRQPKEVKLL-ELHEETKIRQRFYEVKDDERLDAVVRLLKHYRPVSTLAFCNT 256 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL + L+G+L Q+ER L + V +ATDVAARG+D+ L Sbjct: 257 KQQCRDLVNVLRHAGIHALTLNGDLEQRERDQVLIQFANRSCSVLVATDVAARGLDIDQL 316 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 E VI+ +++ +PE +HR GRTGR +G ++ + +RR Sbjct: 317 EAVINVDVTPDPEIHIHRIGRTGRGDEEGWALSLCSSGDRRR 358 >gi|307308978|ref|ZP_07588661.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti BL225C] gi|306900612|gb|EFN31225.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti BL225C] Length = 504 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 200/367 (54%), Gaps = 6/367 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LS G+ T +Q + L++ D++ AQTG+GKT AFGL + L+A+ R P + Sbjct: 17 LSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEKLVADGRRPDPRNI 76 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL +APTREL Q+ L+ K+ + + + +GGVS++++ L G I+V TPGR Sbjct: 77 -RALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLARGVDILVATPGR 135 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D + K + ++ + +VLDEAD+MLDLGF D+ I PK R+ L+FSAT+ I Sbjct: 136 LLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIA 195 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253 LA Y D V+V ++ + ++ V D I+ L + +++F T Sbjct: 196 ELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + K L F+ ++ G SQ +R AL+ RDG RV +ATDVAARGID+P + Sbjct: 256 KHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGV 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370 V + +L P+ +HR GRT R GR G+++ F P ++ R E+L ++V Sbjct: 316 THVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEKLM-GIQIAVASG 374 Query: 371 PAPSVEA 377 AP+ +A Sbjct: 375 EAPADQA 381 >gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus gasseri 224-1] gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus gasseri 224-1] Length = 452 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 192/348 (55%), Gaps = 11/348 (3%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L KDV+ AQTG+GKT AFGL + L ++D A+ I PTRELA+Q EL Sbjct: 3 LEGKDVIGQAQTGTGKTAAFGLPILQNLDKQHDSIQ------AIVIEPTRELAIQTQEEL 56 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 L V V GG + R+ R L+ I+VGTPGRL DH++ ++IS +K +VL Sbjct: 57 FRLGRDEKARVQVVYGGADIRRQIRALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVL 116 Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214 DEADEMLD+GF DIE IL+ + K + L+FSAT+ I + + + D V I + Sbjct: 117 DEADEMLDMGFIQDIESILNYASSKHQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKEL 176 Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274 + ID V +++ + + ++ A++F T+ V T+ L + + Sbjct: 177 TANLIDQYFVRAKENEKFDILCRLIDVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGI 236 Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334 G+LSQ +R + L+ R G+ + +ATDVAARG+D+ + V + ++ +P++ +HR GR Sbjct: 237 HGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGR 296 Query: 335 TGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSVVWEPAPSVEAIR 379 TGRAG+ GMSV FV P + R E+L + ++ +P EA + Sbjct: 297 TGRAGQNGMSVTFVTPNEIGYMRTIEQLTHKK--MMLLKPPTDEEAFK 342 >gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335] gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335] Length = 466 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 202/387 (52%), Gaps = 26/387 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--------- 65 LS +G + T VQ ++P L +DV+ ++TG+GKT+AFG+ + ++ Sbjct: 1 LSHKGITHFTPVQAKAMSPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQ 60 Query: 66 ----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + R P + + PTRELA QV EL + G+ + GGVS + R L Sbjct: 61 GRDGSTRMRKGRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQARAL 120 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G ++VGTPGR+ DHI L++S VVLDEADEML++GF +D+E IL+ K R Sbjct: 121 RQGVDVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKNR 180 Query: 182 ----MLMFSATISPAITTLAKNYQKDAVRVNIASE---NRQHSDIDYRAVLVAL-SDRDN 233 L+FSAT P + + +YQ+D + ++I E +R S + + A+ V +D Sbjct: 181 EKTQCLLFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPFGADAKK 240 Query: 234 AIV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 AI+ +I+ G IVF T+ A+ G++ Q++R L R Sbjct: 241 AILEDIIALFG--KTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLAAFRA 298 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 G V +ATDVAARGID+ D++LVI E + + +HRSGRTGRAG G+SV + QN Sbjct: 299 GAFNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVLLFQQNQ 358 Query: 353 QRRAERLFREANVSVVWE--PAPSVEA 377 R R+ + +E PS EA Sbjct: 359 ARDIVRIEKSLGHGFKFELLGPPSTEA 385 >gi|16264922|ref|NP_437714.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti 1021] gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti 1021] Length = 503 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 200/367 (54%), Gaps = 6/367 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LS G+ T +Q + L++ D++ AQTG+GKT AFGL + L+A+ R P + Sbjct: 17 LSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEKLVADGRRPDPRNI 76 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL +APTREL Q+ L+ K+ + + + +GGVS++++ L G I+V TPGR Sbjct: 77 -RALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLARGVDILVATPGR 135 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D + K + ++ + +VLDEAD+MLDLGF D+ I PK R+ L+FSAT+ I Sbjct: 136 LLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIA 195 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253 LA Y D V+V ++ + ++ V D I+ L + +++F T Sbjct: 196 ELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + K L F+ ++ G SQ +R AL+ RDG RV +ATDVAARGID+P + Sbjct: 256 KHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGV 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370 V + +L P+ +HR GRT R GR G+++ F P ++ R E+L ++V Sbjct: 316 THVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEKLM-GIQIAVASG 374 Query: 371 PAPSVEA 377 AP+ +A Sbjct: 375 EAPADQA 381 >gi|148359632|ref|YP_001250839.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby] gi|148281405|gb|ABQ55493.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby] Length = 468 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 207/356 (58%), Gaps = 12/356 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F P Q + ++L+ Y N+T +Q L LR +D++ A+TGSGKT AF L L + Sbjct: 13 FSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLLNN 72 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 L + S A AL + PTRELA QV + + L V + + GG+ + + Sbjct: 73 L-----KIS-FFAVQALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGS 126 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++GAHI+VGTPGR+ H++ L++S +KA+VLDEAD MLD+GF DDI+ I+ PK+R Sbjct: 127 LRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISICPKQR 186 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239 + L+FSAT I L+K + KD V++ + + DI+ V+ + ++ ++L Sbjct: 187 QTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEE-IDIEQHFYEVSRQAQKFPLLKSLL 245 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 ++ + ++FC+T+ T L F +AL+G++ Q ER A+ + + + Sbjct: 246 LHYRPVSVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILV 305 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ATDVAARG+D+ +L VI+ +L+ + + +HR GRTGRAG KG+++ V P + QR Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDIHIHRIGRTGRAGSKGIALSIVTPADAQR 361 >gi|86130260|ref|ZP_01048860.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] gi|85818935|gb|EAQ40094.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] Length = 638 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 203/351 (57%), Gaps = 12/351 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +A+++ G+ + +QE + P L ++D++ AQTG+GKT AFG L + A Sbjct: 14 QAIADMGFETPSKIQEEAI-PQLLAEDRDMVALAQTGTGKTAAFGFPLLQNIDA------ 66 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + L IAPTREL +Q+ E++ LYAK GV V GG ++ + R++ GA IV Sbjct: 67 SSKTTQGLIIAPTRELCLQITNEMK-LYAKHIKGVRVVAVYGGSNIQEQAREISRGAQIV 125 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGR+ D +R + ++I+ L VLDEADEML++GF +DI IL +P+ + +FSAT Sbjct: 126 VATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDKLTWLFSAT 185 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + +AK + D + + + +N ++ + +V DR A+ + + ++ Sbjct: 186 MPREVARIAKEFMHDPLEITVGHKNEGAKNVSHEYYVVHTRDRYQALKRLSDANPDIFSV 245 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ + + L E + AL G+LSQ +R ++ R+ + ++ +ATDVAARGI Sbjct: 246 IFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNNQIQMLVATDVAARGI 305 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 D+ D+ VI+ +L E HRSGRTGRAG+ G S+ ++ ++ R+ ++L Sbjct: 306 DVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGTSMVIVTKSEMRKIKQL 356 >gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965] gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965] Length = 497 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 201/347 (57%), Gaps = 15/347 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+++ G+ + +Q+ + ++ KD++ AQTG+GKT AFG+ + L D Sbjct: 20 IMKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGIPI----LQRIDTSK 75 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P P A+ ++PTRELA+Q E+ L + GG + R+ R L+ +I+V Sbjct: 76 PG--PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKKTNIIVA 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S+++ VLDE DEM+D+GF DDI I+ ++PK+R+ L FSAT+ Sbjct: 134 TPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLFFSATMP 193 Query: 191 PAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGAKN 246 I LA ++ + + V++ A+ + +Y + L DR +A+ +L + Sbjct: 194 APIRELANSFLNEPEIVKIKAATVTIDLIEQEY----IELPDRQKFDALCRLLDMQSPEL 249 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF T+ T+ L + + L G+LSQQ+R + ++ ++G +ATDVAAR Sbjct: 250 AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAAR 309 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNM 352 G+D+ + V + ++ +PE +HR GRTGRAG+ G+ + FVI + M Sbjct: 310 GLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREM 356 >gi|33863354|ref|NP_894914.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313] gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313] Length = 635 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+E+GY + +Q+A + + +D++ AQTG+GKT AF L L L R Sbjct: 96 KTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLHDHGSR---- 151 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELA+QV + + V GG + L+ G +VVGT Sbjct: 152 --PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLKRGVDVVVGT 209 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R L+ S L+ +VLDEADEML +GF DD+E+IL+ P++R+M++FSAT+ Sbjct: 210 PGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPEERQMVLFSATMPS 269 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+K Y + + I S +++ I R + + S + A+ +L + I+F Sbjct: 270 EIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITLQNSHKLEALRRVLEAFTGEGVIIFA 329 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L V L+G++ Q +R ++ +R G + +ATDVAARG+D+ Sbjct: 330 RTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKGSVNILVATDVAARGLDVD 389 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + LVI+ ++ + E +HR GRTGRAGR G ++ FV P+ Sbjct: 390 RISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPR 429 >gi|58426933|gb|AAW75970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 482 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 143/413 (34%), Positives = 213/413 (51%), Gaps = 16/413 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT VQ L P LR DV+ A TGSGKT AFGL L Sbjct: 25 MNEFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 84 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 85 LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 136 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + H+VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 137 PQLASLEAHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 196 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT I TLA+ KD + + + + +ID + V + R A Sbjct: 197 RCDKHRQSLLFSATFPDIIRTLAREILKDPIEITVEGAD-NAPEIDQQFFEVDPTYRQKA 255 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 256 VAGLLLRFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 315 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 316 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 375 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R + L +D + D+ + D+L Sbjct: 376 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 427 >gi|49480463|ref|YP_039444.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332019|gb|AAT62665.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 481 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q+ R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQENRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFTIRKVNAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|116253340|ref|YP_769178.1| DEAD box ATP-dependent RNA helicase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 576 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 201/364 (55%), Gaps = 6/364 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + G T +QE + L +D++ AQTG+GKT AFGL L LLA+ R + Sbjct: 32 LFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTT 91 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 L +APTREL Q+ L+ K+ + + V +GGVS+++++ L+ G I+V TPGR Sbjct: 92 -RTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQLEKGTDILVATPGR 150 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D I + + ++ ++ +VLDEAD+MLDLGF D+ I PKKR+ ++FSAT+ AI Sbjct: 151 LLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQTMLFSATMPKAIA 210 Query: 195 TLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA Y D V+V + + ++ Y + +D+ + L + A+VF T Sbjct: 211 DLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKSLTENPDGRAMVFLRT 270 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + K L + V ++ G SQ +R AL+ RDG + IATDVAARGID+P + Sbjct: 271 KHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAV 330 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370 V + +L P+ +HR GRT RAGR G+++ F P + R ERL +++V Sbjct: 331 SHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLM-GIDITVASG 389 Query: 371 PAPS 374 AP+ Sbjct: 390 EAPA 393 >gi|332521345|ref|ZP_08397801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043073|gb|EGI79271.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 444 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 203/370 (54%), Gaps = 12/370 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFS 70 +A+S++GY N + +Q + P L DVL SAQTG+GKT F L L +L+EN ++F Sbjct: 14 KAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLLH-ILSENPKEKFR 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A L + PTRELA QV ++ + V GGV+ + +++ G ++V Sbjct: 73 PIRA---LVLTPTRELAAQVYANVKEYSEFLNLRSVVIFGGVNQKPQVANIRKGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D L++ ++ VLDEAD MLD+GF DIE ++ P KR+ LMFSAT S Sbjct: 130 TPGRLIDLNNQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA N K+ V+V EN I + VA + ++ ++ K +VF Sbjct: 190 KDIKKLAFNILKNPVQVEATPENTAVEAISQKVYRVAKGLKTGLVIKLISDGNWKQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ TK + A+ G SQ R+ AL+ +DG RV +ATD+AARG+D+ Sbjct: 250 TRTKHGANKLTKKMISSGITAAAIHGNKSQGARTKALKGFKDGTIRVMVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA-NVS 366 P L VI+ E+ + E+ +HR GRTGRAG KG ++ ++ + R E+L E V Sbjct: 310 PLLPHVINFEIPNISEDYVHRIGRTGRAGAKGEAISLVSADETQYLRDIEKLIGEKLKVE 369 Query: 367 VV--WEPAPS 374 ++ +EP P+ Sbjct: 370 ILEGFEPDPN 379 >gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17] gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17] Length = 459 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 205/383 (53%), Gaps = 8/383 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL +GY T +Q + L +D+L AQTG+GKT AF L L+ N R P Sbjct: 15 ALEAKGYSEPTPIQRDSIPTLLEGRDLLGIAQTGTGKTAAFVLPSIQRLVEANKRVLPTH 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + L +APTRELA Q+ + + + VA GG S+++ R+DL G I+V TPG Sbjct: 75 CRM-LVLAPTRELASQIADNAKGYAKFSKLAVATVFGGTSINKNRQDLSRGVDILVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + LN+S ++ +VLDEAD+MLDLGF + I+ P+KR+ L FSAT+ AI Sbjct: 134 RLIDLVEQGFLNLSMIEILVLDEADQMLDLGFIHALRRIVKMIPRKRQTLFFSATMPAAI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + + V++ + ++ V ++ + +L + A+VF T Sbjct: 194 RDLADKFLDNPATVSVTPVSTTAERVEQSVTFVTQQEKQALLTILLADPAIELALVFTRT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R K+LA + A+ G SQ +R AL R G+ RV +ATD+AARGID+P + Sbjct: 254 KHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFRSGQTRVLVATDIAARGIDIPGV 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWE 370 V + EL + E +HR GRT RAGR G+++ ++ + + E+L R+ ++VV Sbjct: 314 SHVFNFELPNVAEQYVHRIGRTARAGRSGLAIAFCAEDERPYLKDIEKLTRQ-KITVVPL 372 Query: 371 PAPSV---EAIRERDAQRILQDP 390 PA V E I+ + + I DP Sbjct: 373 PADFVKRAETIKSQRVKAIGADP 395 >gi|294651664|ref|ZP_06728967.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194] gi|292822443|gb|EFF81343.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194] Length = 647 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 127/345 (36%), Positives = 195/345 (56%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 12 ETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAGQETF 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +R + P L I+PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 72 VPFKERMKAVTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + L + ++++++DEAD MLDLGF +D+E I + + + + Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIGELAANRNQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ D R+ I + + ++D+ + + + L Sbjct: 191 TLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHKKKLLTHWLS 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 DESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G +V Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAV 355 >gi|258622745|ref|ZP_05717763.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] gi|258584933|gb|EEW09664.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] Length = 460 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 212/367 (57%), Gaps = 12/367 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ +T +Q L L +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R AL + PTRELA QV ++ L V+ +C GG+ + + L++GA Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTLGRIIHNIKVLTLC-GGMPMGPQIGSLEHGA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+F Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT +I +A++ ++A+ + +A+ + S Y + + RD A+ +L +H Sbjct: 185 SATYPASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALEALLLHHQPT 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAA Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ ++ Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364 Query: 366 SVVWEPA 372 ++ EP+ Sbjct: 365 AI--EPS 369 >gi|298490698|ref|YP_003720875.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae' 0708] gi|298232616|gb|ADI63752.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708] Length = 492 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 127/351 (36%), Positives = 194/351 (55%), Gaps = 7/351 (1%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 F N+ P++I A++ERGY T +Q + L D+L AQTG+GKT +F L L Sbjct: 3 FSNLALSPEII-RAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLLH 61 Query: 61 TLLAENDRFSPASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L + + S ++ P+ AL + PTRELA QV + + GGVS++ + Sbjct: 62 QLSSNKNVKSNSTGWVPIRALILTPTRELAAQVEESVHDYGKYLKLKSMAMFGGVSINPQ 121 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 +R L++G IVV TPGRL DH+ +N+S ++ +VLDEAD MLD+GF DI I+ P Sbjct: 122 KRLLKSGVDIVVSTPGRLLDHVEQGTVNLSRIEVLVLDEADRMLDMGFIRDIRRIMSILP 181 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 KKR+ L+F AT S I LA + +A N I RA V + + + Sbjct: 182 KKRQNLLFFATFSDKIKELAAGLLNRPTMIEVARRNVTADTIAQRAYQVDRDKKPQLLAH 241 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +++ +VF T+ R K L + Q +A+ G SQ R++AL ++G +V Sbjct: 242 LIKQDDWYQVLVFTRTKYGADRLVKQLNDDRIQALAIHGNKSQGARTHALAKFKNGSLQV 301 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATD+AARG+D+ +L V++ +L PE+ +HR GRTGRAG +G ++ ++ Sbjct: 302 LVATDIAARGLDISELPHVVNYDLPYVPEDYVHRIGRTGRAGARGEAISLV 352 >gi|315644143|ref|ZP_07897313.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] gi|315280518|gb|EFU43807.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] Length = 481 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 197/359 (54%), Gaps = 9/359 (2%) Query: 2 KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F + P + I AL GY T VQ ++ L ++D++V +QTGSGKT A+G+ L Sbjct: 4 KRFTDYPLSEEIRRALDSLGYTTPTEVQTEVIPVALEKRDLVVKSQTGSGKTAAYGIPLC 63 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + ++ P AL + PTRELA+QV ++ + + G H ++ Sbjct: 64 EQVEWNENK------PQALILTPTRELALQVNEDITNIGRFKRIKATPLYGRHPFHMQKA 117 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L+ HIVVGTPGR+ DHI L++ + +V+DEADEML++GF + ++ I+ + P+ Sbjct: 118 ELKQRTHIVVGTPGRVLDHIERGSLSLDRISHLVIDEADEMLNMGFIEQVQSIIQALPRN 177 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT + LA Y ++ I + + ID+ V V +D+ + N+L Sbjct: 178 RVTMLFSATFPEDVAKLAHKYMNHPEQIEIKASGLTTATIDHAQVQVKEADKLAVLQNLL 237 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVFC T+ V + LA+ + + G + Q+ER + R G+ R I Sbjct: 238 ITTNPDSCIVFCRTQEHVDTLFRALADLGYPCDRIHGGMEQEERFEVMHAFRRGQFRYLI 297 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357 ATDVAARGID+ ++ VI+ ++ E+ +HR+GRTGRAG+ G ++ V P++ R A+ Sbjct: 298 ATDVAARGIDISNITHVINYDIPLEKESYVHRTGRTGRAGQTGSAITLVTPRDSGRLAD 356 >gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5] Length = 473 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 187/340 (55%), Gaps = 1/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A++E+GYV T +QE + P L +D++ AQTG+GKT AF L + LL+ Sbjct: 7 NLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQ-LLSA 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R AL + PTRELA+Q+ T + V GGV+ + LQ G Sbjct: 66 RPRTKGRRPIKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDALQRGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL D I +++S ++ VLDEAD MLD+GF DI+ IL PK+R+ L F Sbjct: 126 DLLVATPGRLLDLIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKERQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I TLA + D V V + I + +++ + ++++LR Sbjct: 186 SATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEKAEKKDLLISLLRERSEG 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ R ++L + + A+ G+ SQ R A+ R GR RV IATD+AA Sbjct: 246 SVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRVLIATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L LVI+ +L E +HR GRTGRAG G ++ Sbjct: 306 RGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAI 345 >gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1] gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1] Length = 477 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 193/345 (55%), Gaps = 8/345 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ + GY T +Q + L+ KDVL AQTG+GKT +F L + + L Sbjct: 10 PKVLA-AVGDAGYTVPTPIQAGAIPHALQGKDVLGIAQTGTGKTASFVLPMLTRLERGRA 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P L + PTRELA QV + +A+ IGGVS + + L+ GA + Sbjct: 69 R---ARMPRTLILEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKKLERGADV 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FSA Sbjct: 126 LIATPGRLLDHHERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHG-- 243 T+ P IT L + + + VRV ++ +I R V + + +++R G Sbjct: 186 TMPPEITKLTEQFLQGPVRVEVSKPASTAVNITQRLVKSGSKPWAKREKLRDLIRAEGDE 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + V+ + L H F AL G++ Q+ R L+ R G+ ++ +A+DV Sbjct: 246 LKNAIIFCNRKTEVATLFRSLVRHEFDAGALHGDMDQRARMMMLENFRKGKLKLLVASDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+PD+ V + ++ ++ E+ +HR GRTGRAGR G + ++ Sbjct: 306 AARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGKAFTIV 350 >gi|255008452|ref|ZP_05280578.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12] Length = 427 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 125/344 (36%), Positives = 188/344 (54%), Gaps = 6/344 (1%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ + I +AL + GY + T +QE + L+ KD+L AQTG+GKT AF + + Sbjct: 3 FENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + R AL + PTRELA+Q+G E TG+ AV GGV + L Sbjct: 63 LYKTDHR----KGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDAL 118 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I+V TPGRL D I ++++ L VLDEAD MLD+GF DI+ IL P KR+ Sbjct: 119 RGGIQILVATPGRLLDLISQGFVSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQ 178 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ P I TLA + +V + + I + V ++ + ++++L+ Sbjct: 179 TLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKD 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ ++F T+ + ++L + A+ G +Q R AL ++ R IAT Sbjct: 239 ASIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+AARGID+ L VI+ EL + PE +HR GRTGRAG +G+++ Sbjct: 299 DIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAI 342 >gi|304319730|ref|YP_003853373.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis HTCC2503] gi|303298633|gb|ADM08232.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis HTCC2503] Length = 460 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/343 (38%), Positives = 186/343 (54%), Gaps = 9/343 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL+E GY + T +Q + LR +DVL AQTG+GKT +F L + L R Sbjct: 25 ILEALTESGYTHPTPIQADAIPEALRGRDVLGIAQTGTGKTASFVLPVIHRLARGRAR-- 82 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P +L +APTRELA QV + E + +A+ IGGVS + L G +++ Sbjct: 83 -ARMPRSLILAPTRELAAQVSEQFEKYGKNHKLSMALLIGGVSFADQDAKLTRGVDVLIA 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH L ++ L+ +V+DEAD MLD+GF D+E I +P R+ L FSAT+ Sbjct: 142 TPGRLLDHHERGKLLLTGLEVMVVDEADRMLDMGFIPDLERIFKLTPFTRQTLFFSATMP 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAK 245 P I L + R+ +A I R + S D LR+ K Sbjct: 202 PEIQRLTDQFLSAPARIEVAKPATTAKTITQRIARLP-SGEDKLKRAALRHLVETAENLK 260 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 N I+FC+ + +V K L EH F + G+L Q R+ LQM RDG ++ +A+DVAA Sbjct: 261 NGIIFCNRKKNVDVIAKSLQEHGFDARPIHGDLPQSFRTETLQMFRDGGLKLLVASDVAA 320 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RG+D+PD+ V + + N ++ +HR GRTGRAGR G +V ++ Sbjct: 321 RGLDIPDVSHVFNFSVPINADDYVHRIGRTGRAGRLGHAVMLV 363 >gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium 104] gi|118163544|gb|ABK64441.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium 104] Length = 566 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 162/521 (31%), Positives = 269/521 (51%), Gaps = 34/521 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ A+++ GY T +Q A + + DV+ AQTG+GKT AF + + L++ D Sbjct: 22 PSVL-RAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPI----LSKID 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 S A+ AL +APTRELA+QV A + + I GG S + L+ GAH Sbjct: 77 VASTATQ--ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAH 134 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L++SH+ +VLDEADEML +GF ++++ IL +P+ +++ +FS Sbjct: 135 VVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFS 194 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ PAI L Y D + V+ ++ +I R + VA + +A+ +L + Sbjct: 195 ATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEA 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + + L F A++G++ Q +R + ++DG + +ATDVAAR Sbjct: 255 MIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAAR 314 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANV 365 G+D+ + V++ ++ + E+ +HR GRTGRAGR G ++ FV P+ +R + +A Sbjct: 315 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPR--ERHLLKAIEKATR 372 Query: 366 SVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPE-- 414 + E P+VE + +AQR+ + F DSI +K+V +HD Sbjct: 373 QPLTEAELPTVEDV---NAQRVAK---FADSITAALGAPGIDLFRKLVQDYEREHDVPMA 426 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474 IAA R G EE ++ R+R + + R + + + ++VG Sbjct: 427 DIAAALAVQSRDG----EEFL-MAPEPPRERRERHTERRERTEKPRST-RPLATYRIAVG 480 Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + K ++ + G++R G I + PD + VE+ A Sbjct: 481 KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPA 521 >gi|291613137|ref|YP_003523294.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] gi|291583249|gb|ADE10907.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] Length = 475 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 126/343 (36%), Positives = 192/343 (55%), Gaps = 11/343 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + Y +T +Q L L D++ A+TGSGKT AF L L + L RF A Sbjct: 33 LQQLEYRTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLLTNL--NPRRF----A 86 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ + PTRELA QV +EL L +A ++++ +GG ++ +R L++GAHIVVGTP Sbjct: 87 VQAMVLCPTRELADQVTQELRRLARFADNIKILSL-VGGSTMRPQRDSLEHGAHIVVGTP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L + L +VLDEAD MLD+GF DDI F++ P +R+ ++FSAT Sbjct: 146 GRIMDHLERGSLKLDALNTLVLDEADRMLDMGFYDDIAFVVKHCPAQRQTMLFSATYPEG 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ + + V + E + S I R V +R A+ +L+++ + + FC+ Sbjct: 206 IARLAQKFMRKPQEVKL-PEQHEGSKIRQRFYEVKHEERLQAVATLLKHYRPVSTLAFCN 264 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ VL + L+G++ Q+ER L + V +ATDVAARG+D+ Sbjct: 265 TKQQCRDLLDVLHAEGIHALTLNGDMEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQ 324 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 LE VI+ +++ +PE +HR GRTGRA +G ++ P +M R Sbjct: 325 LEAVINVDVTPDPEIHIHRIGRTGRADAEGWALSLASPADMHR 367 >gi|217970097|ref|YP_002355331.1| DEAD/DEAH box helicase [Thauera sp. MZ1T] gi|217507424|gb|ACK54435.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T] Length = 677 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 210/379 (55%), Gaps = 11/379 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + AL+E GY + +Q A + L D+L AQTG+GKT AF L + + L Sbjct: 22 QLPAPLLSALAEVGYETPSPIQAACIPQLLAGHDILGEAQTGTGKTAAFALPMLAKLDLA 81 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + R P L + PTRELA+QV ++ + V GG S+ + R L G Sbjct: 82 DTR------PQVLVLTPTRELAIQVAEAFAKYAHHLKNFHVLPIYGGQSMVVQLRQLSRG 135 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DH+ + L + LKA+VLDEADEML +GF DD+E+IL+ +P +R+ + Sbjct: 136 AQVVVGTPGRVMDHLERESLKLDALKAIVLDEADEMLRMGFIDDVEWILEHTPAERQTAL 195 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A+ + ++ + I + + I R LV D+ +A+ IL + Sbjct: 196 FSATMPNVIREVARRHLRNPQEIKIRAATSTVAKISQRYWLVRGVDKLDALTRILDAEES 255 Query: 245 KN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + A+VF T+ + LA + AL+G+++Q R ++ +++G + IATDV Sbjct: 256 FDAALVFVRTKIATEELADKLAARGYAAAALNGDMNQGLRERVIEQLKNGALDIVIATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360 AARGID+P + VI+ ++ + E +HR GRTGRAGR+G+++ FV P+ M + ER Sbjct: 316 AARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGREGVAILFVAPRETRMLKMIERAT 375 Query: 361 REANVSVVWEPAPSVEAIR 379 R+ + V +R Sbjct: 376 RQPITPIALPSGEEVTNLR 394 >gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus curdlanolyticus YK9] Length = 500 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 187/346 (54%), Gaps = 12/346 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + LS G T VQ + L DV+V AQTG+GKT+AF L + + Sbjct: 10 VSQELTSVLSSYGITEPTPVQHKAIPLVLNGADVIVQAQTGTGKTLAFALPILERIDTTK 69 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-A 125 + AL + PTRELA+Q+ EL L G + GG V + R L+N Sbjct: 70 NHTQ------ALILTPTRELAIQITTELNKLAKTVGANILAAYGGQDVESQIRKLRNSWP 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184 HIV+ TPGRL DH+R + + + ++ +VLDEAD+ML +GF D+E I+ S P++ R+ ++ Sbjct: 124 HIVIATPGRLLDHLRRETIRLGKIRMLVLDEADQMLHMGFLPDVETIVSSMPRQHRQTML 183 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYH 242 FSAT+ I L Y VNI E I R V + +DR ++ +V ++ + Sbjct: 184 FSATMPAQIRKLGAEYMNGPTDVNITPEKVTVDKI--RQVAIETTDRRKEDTLVELIGKY 241 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A+VFC T+ + + L E L G+LSQ +R ++ R R +V IATD Sbjct: 242 QPYLAVVFCRTKVRAKKLNEALQERGISSDELHGDLSQAKREQVMKRFRQARLQVLIATD 301 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARG+D+ + V + ++ +PE +HR GRTGRAG +GM+V ++ Sbjct: 302 VAARGLDVEGVSHVFNYDVPQDPETYVHRIGRTGRAGNEGMAVTLV 347 >gi|149196871|ref|ZP_01873924.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa HTCC2155] gi|149139981|gb|EDM28381.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa HTCC2155] Length = 537 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 186/341 (54%), Gaps = 11/341 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 I + L +G+ + +QE + P L ++ D++ AQTG+GKT AFGL + + Sbjct: 13 ITQCLEAKGFKEPSPIQEQAI-PVLLSQDHDIIGQAQTGTGKTAAFGLPIVQ-------K 64 Query: 69 FSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P P AL + PTRELA+QV E++ G+ GG + ++R L+ G + Sbjct: 65 IEPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKRALKKGVDL 124 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGR I L + L+ +VLDEADEML++GF +D+E +L +SP R +LMFSA Sbjct: 125 VVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVLMFSA 184 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ P + +A++Y +++ + SE ID ++ A+ I+ Sbjct: 185 TMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCRIMDLEKDFYG 244 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V + + LA + + G+++Q+ R L+ R+ + IATDVAARG Sbjct: 245 IIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIATDVAARG 304 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ID+ DL +++ L E+ +HR GRTGRAG+ G ++ +I Sbjct: 305 IDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLI 345 >gi|229159014|ref|ZP_04287070.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342] gi|228624433|gb|EEK81204.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342] Length = 481 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 116/337 (34%), Positives = 189/337 (56%), Gaps = 7/337 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 VI+ ++ E+ +HR+GRTGRAG G ++ F+ P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITP 348 >gi|157693344|ref|YP_001487806.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus SAFR-032] gi|157682102|gb|ABV63246.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus SAFR-032] Length = 480 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 8/367 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 + +AL + T VQ L+ ++D++V +QTGSGKT A+GL + + AEN Sbjct: 15 LKQALKALHFHTPTPVQHETLSVAFSKQDLIVKSQTGSGKTAAYGLPICEMVDWAEN--- 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL + PTRELA+QV ++L L + A G ++ +L HIV Sbjct: 72 ----KPQALILVPTRELAMQVKQDLTSLGRLKRIKAAAIFGKAPFQAQKIELAQKNHIVC 127 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++ +LK VLDEADEML++GF D + I+ P KR ++FSAT+ Sbjct: 128 GTPGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIDQVSSIIQYLPPKRMSMLFSATM 187 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S + L++ + + + IA E I + + + + + + + I+ Sbjct: 188 SDEMKKLSEQFLQSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPDSCII 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V+ T L E + G + Q++R + ++G R IATD+AARGID Sbjct: 248 FCNTQDRVNELTMKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGID 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + D+ VIH +L E +HR+GRTGRAG+ G ++ + +N + + L EA + Sbjct: 308 VSDMTHVIHYDLPYEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDELKEEAGIDFKT 367 Query: 370 EPAPSVE 376 +P P+ E Sbjct: 368 QPYPTKE 374 >gi|148271949|ref|YP_001221510.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829879|emb|CAN00803.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 403 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 194/360 (53%), Gaps = 6/360 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67 Q I L E G + +Q A + L +DVL +TGSGKT+AFG L LL END Sbjct: 27 QNIVRVLEELGAASPFPIQAATIPDVLAGRDVLGRGRTGSGKTIAFGAPLVERLL-ENDG 85 Query: 68 --RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AL +APTRELA+Q+ R ++ + G+ GGV ++ LQ G Sbjct: 86 AKNRKMGRKPRALILAPTRELAMQIDRTVQPIARSVGLFTTTIFGGVPQFKQVGALQRGV 145 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D I L++S + VLDEAD M DLGF + ++ IL K + L+F Sbjct: 146 DILIATPGRLEDLIDQGRLDLSEIVVTVLDEADHMCDLGFLEPVQRILRQVKKDGQRLLF 205 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + TL + + +A E++ S ID+R +L+ RD A + G Sbjct: 206 SATLDKGVATLVNEFLPNPSVHEVAGEDQASSTIDHRVLLI--EQRDKAAIIEQLSSGEG 263 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F TRA + L + +L G+L+Q R+ LQ++ G+ RV +ATDVAA Sbjct: 264 KTLIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVRVLVATDVAA 323 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LVI A+ ++ LHR+GRTGRAG++G V +I + +RR + L A + Sbjct: 324 RGIHVDDIGLVIQADAPDEYKSYLHRAGRTGRAGKQGTVVTLITKARRRRMDDLLGRAEI 383 >gi|226953843|ref|ZP_03824307.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244] gi|226835434|gb|EEH67817.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244] Length = 647 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 127/345 (36%), Positives = 195/345 (56%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 12 ETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAGQETF 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +R + P L I+PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 72 VPFKERMKAVTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + L + ++++++DEAD MLDLGF +D+E I + + + + Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIGELAANRNQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ D R+ I + + ++D+ + + + L Sbjct: 191 TLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHKKKLLTHWLS 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 DESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G +V Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAV 355 >gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114] gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114] Length = 500 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 187/351 (53%), Gaps = 7/351 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69 I +A+ E+GY + +Q + + KDV+ +AQTG+GKT F L L L +F Sbjct: 12 ILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSNGPKRKF 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A L + PTRELA QV +E + V GGV V+ + + L+ G ++V Sbjct: 72 NQVRA---LVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVDVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI+ IL PK R+ L+FSAT Sbjct: 129 ATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK KD V +++A N ++ ++ + + +++ + K +V Sbjct: 189 SDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDNDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L E A+ G SQ R+ AL + G+ RV +ATD+AARG+D Sbjct: 249 FSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATDIAARGLD 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 + L VI+ +L PE+ +HR GRTGRAG G ++ + ++ A+ LF Sbjct: 309 IEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSED---EAKELF 356 >gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147] gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147] Length = 449 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 189/345 (54%), Gaps = 11/345 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I AL GY T +Q + L +D++ SAQTGSGKT AF L ++ Sbjct: 9 NLDKNILSALKSAGYEEPTPIQAQSIPAALANQDIMASAQTGSGKTAAFLLPSLQKIIKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P L + PTRELA QV + + LYA+ V +GG S ++ + L Sbjct: 69 SEQ--PGKGPRVLVLTPTRELAQQVEKNAQ-LYAQNMKWVRTVTLVGGSSFGQQIKALSR 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 IVV TPGRL DH+R ++ L+ +VLDEAD MLD+GF DDIE I+ + P+ R+ L Sbjct: 126 PIDIVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAAMPESRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILR 240 +FSAT A+ LA+ K+ + I R + L+ DR++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKNPEVIEI---ERAEAQGKIEEQLLYCDDRNHKNRLLDHILR 242 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++F +T+A L E F L G++ Q R+ L +R GR ++ +A Sbjct: 243 DANIDQCVIFTATKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLMDVRKGRCKILVA 302 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARGID+P + VI+ +L E+ +HR GRTGRAGR G++V Sbjct: 303 TDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAV 347 >gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652] gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652] Length = 565 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 128/350 (36%), Positives = 195/350 (55%), Gaps = 5/350 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + G T +QE + L+ +D++ AQTG+GKT AFGL L LLA+ R + Sbjct: 38 LFQLGIETPTPIQEQAIPLLLQGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTT 97 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 L +APTREL Q+ L+ K+ + + V +GGVS+++++ L+ G ++V TPGR Sbjct: 98 -RTLILAPTRELVNQIADNLKKFIRKSPLRINVVVGGVSINKQQLQLEKGTDVLVATPGR 156 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D + + + ++ ++ +VLDEAD+MLDLGF D+ I PKKR+ ++FSAT+ AI Sbjct: 157 LLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKAIA 216 Query: 195 TLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA Y D V+V + + ++ Y + +D+ + L + AIVF T Sbjct: 217 DLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLTENPDGRAIVFLRT 276 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + K L + V ++ G SQ +R AL+ RDG + IATDVAARGID+P + Sbjct: 277 KHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAV 336 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360 V + +L P+ +HR GRT RAGR G+++ F P + R ERL Sbjct: 337 SHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLM 386 >gi|228961717|ref|ZP_04123322.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797966|gb|EEM44974.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar pakistani str. T13001] Length = 481 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 196/370 (52%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFFYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEISKAIGP 371 Query: 374 SVEAIRERDA 383 S E + + A Sbjct: 372 SKEEVMKEKA 381 >gi|227818223|ref|YP_002818232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] gi|227005726|gb|ACP15469.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] Length = 481 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 120/365 (32%), Positives = 196/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQVLVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I] gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I] Length = 467 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 123/349 (35%), Positives = 191/349 (54%), Gaps = 13/349 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + P L +DVL AQTG+GKT +F L + TLLA Sbjct: 11 PKVL-KAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + G + Sbjct: 69 --ARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDALIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + R+ +A + I+ V V S RD + ++ Sbjct: 187 TMAPEIERITNTFLSGPARIEVARQATASETIEQAVVQVKPSRRDREGSEKRTVLRALID 246 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K N I+FC+ + V K L ++ + A+ G+L Q +R+ L R+G R+ Sbjct: 247 GEGDKLTNGIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRTRTLDSFREGSLRIL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +A+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGR+G ++ + Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAITI 355 >gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645] gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645] Length = 447 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 189/340 (55%), Gaps = 1/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 + + I EAL+ Y T +Q + L D++ AQTG+GKT AF L + + L + Sbjct: 2 QLSEAIQEALATEKYHTPTPIQGQAIPHLLEGSDLIGCAQTGTGKTAAFALPILNQLDLD 61 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R + A AP L ++PTRELAVQ+ + + GGV + + R L+ G Sbjct: 62 RSR-ADACAPQVLVLSPTRELAVQIAQSFNVYGRNVKFRLTTIFGGVGQNPQVRALKRGV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+ + TPGRL D + +++S K VLDEAD MLD+GF ++ I+ PK+R+ + F Sbjct: 121 HVAIATPGRLLDLMDQGYVDLSQAKTFVLDEADRMLDMGFMPALKTIVSKLPKQRQTIFF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 +AT+ P + LA + VR+ +A E+ ++ R + V+ D+ + + L+ G Sbjct: 181 TATMPPKVAQLASGLLNNPVRIEVAPESTTAERVEQRLMYVSQGDKRALLEHSLQAEGVG 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ R K L + A+ G +Q +R+ AL+ R GR +V +ATDVAA Sbjct: 241 RTLVFTKTKHGADRLAKELNASGIRTDAIHGNKTQNKRNRALESFRSGRLQVLVATDVAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ + V++ +L +PE+ +HR GRTGRAG++G+++ Sbjct: 301 RGIDVDGVTHVVNFDLPIDPESYVHRIGRTGRAGKEGIAL 340 >gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42] gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42] Length = 560 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 129/350 (36%), Positives = 194/350 (55%), Gaps = 5/350 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + G T +QE + L +D++ AQTG+GKT AFGL L LLA+ R + Sbjct: 38 LFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTT 97 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 L +APTREL Q+ L+ K+ + + V +GGVS+++++ L+ G I+V TPGR Sbjct: 98 -RTLILAPTRELVNQIAENLKKFIRKSPLRINVVVGGVSINKQQLQLEKGTDILVATPGR 156 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D + + + ++ ++ +VLDEAD+MLDLGF D+ I PKKR+ ++FSAT+ AI Sbjct: 157 LLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKAIA 216 Query: 195 TLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA Y D V+V + + ++ Y + +D+ + L + AIVF T Sbjct: 217 DLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKSLTENPDGRAIVFLRT 276 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + K L + V ++ G SQ +R AL+ RDG + IATDVAARGID+P + Sbjct: 277 KHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAV 336 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360 V + +L P+ +HR GRT RAGR G+++ F P + R ERL Sbjct: 337 SHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLM 386 >gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101] Length = 537 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 122/350 (34%), Positives = 201/350 (57%), Gaps = 9/350 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ +AL+ GY + +Q+A + L +D++ AQTG+GKT AF L + + L Sbjct: 83 FGFAPELL-DALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPMLAALD 141 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDLQ 122 + P L + PTRELA+QV + A + + + G S R++ L+ Sbjct: 142 GQQ------RTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLK 195 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G IVVGTPGR+ DH+R L++S L+++VLDEADEML +GF DD+E++L+ P +R++ Sbjct: 196 RGVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQV 255 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT+ P I ++ Y D V I ++ S I R + V + A+ +L Sbjct: 256 VLFSATMPPEIRRISHKYLNDPAEVTIKTKGADSSRIRQRFITVNGPQKLEALTRVLESE 315 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + I+F T+A + L + V L+G+++Q +R ++ +++G V +ATD Sbjct: 316 TKEGVIIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVATD 375 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 VAARG+D+ + LV++ ++ + E +HR GRTGRAGR G ++ FV P+ Sbjct: 376 VAARGLDVDRITLVVNYDIPFDSEAYVHRVGRTGRAGRSGDAILFVTPRE 425 >gi|301056918|ref|YP_003795129.1| ATP-dependent RNA helicase [Bacillus anthracis CI] gi|300379087|gb|ADK07991.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 481 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALIGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P KR ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ V ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + ++ AP Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|220909835|ref|YP_002485146.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp. PCC 7425] gi|219866446|gb|ACL46785.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7425] Length = 457 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 124/328 (37%), Positives = 182/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + P L +DV+ AQTG+GKT AF L + L D SPA AL Sbjct: 22 GFNEPTPIQIQAIPPLLAGRDVIGQAQTGTGKTAAFALPI----LERIDTQSPAVQ--AL 75 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELAVQV + + A + V GG ++ R+ L GA ++VGTPGR+ D Sbjct: 76 ILTPTRELAVQVSQSIYNFKADPKIRVLAIYGGQAIERQIERLHKGAQVLVGTPGRVLDL 135 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 + LN++ L +VLDEADEMLD+GF D++ IL +P +R+M FSAT++P + LA Sbjct: 136 LNRGVLNLNALAWLVLDEADEMLDMGFMPDVKQILSQAPAQRQMAFFSATMAPPVYRLAT 195 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASV 257 + + + + S I+ A V + + +L ++AI+F TR Sbjct: 196 QFLRSPETITVEHPKAAPSRIEQVAYKVPRGWSKSTTLQLVLEMEDPESAIIFVRTRKVA 255 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + T L H + V G+LSQ +R LQ R G+ R +ATD+AARG+ + DL VI Sbjct: 256 AELTSQLQSHGYSVDEYHGDLSQSQRERLLQRFRQGQIRWVVATDIAARGLHVDDLTHVI 315 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L + E+ +HR GRTGRAG+ G++V Sbjct: 316 NYDLPDSVESYVHRIGRTGRAGKTGIAV 343 >gi|84624218|ref|YP_451590.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898981|ref|YP_201355.2| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576177|ref|YP_001913106.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368158|dbj|BAE69316.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520629|gb|ACD58574.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 458 Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 143/413 (34%), Positives = 213/413 (51%), Gaps = 16/413 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT VQ L P LR DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + H+VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT I TLA+ KD + + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLAREILKDPIEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R + L +D + D+ + D+L Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403 >gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 462 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D +R ++ + L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMRSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|116252340|ref|YP_768178.1| cold-shock DeaD-box protein A (ATP-dependent RNA helicase) [Rhizobium leguminosarum bv. viciae 3841] gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase) [Rhizobium leguminosarum bv. viciae 3841] Length = 521 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 190/347 (54%), Gaps = 10/347 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+++ GY T +Q + L +D+ AQTG+GKT +F L + S L Sbjct: 15 LSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGR 74 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P L + PTRELA QV E + VA+ IGGVS + R L+ GA Sbjct: 75 AR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGAD 131 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH L +S ++ +V+DEAD MLD+GF DIE I P R+ L FS Sbjct: 132 VLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----Y 241 AT+ I LA + ++ R+ +A + + R VA +D +LR Sbjct: 192 ATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQR--FVASHGKDYEKRAVLRELVRAQ 249 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 KNAI+FC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG ++ +A+ Sbjct: 250 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 309 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 310 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 356 >gi|328948067|ref|YP_004365404.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489] gi|328448391|gb|AEB14107.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM 2489] Length = 534 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 116/326 (35%), Positives = 187/326 (57%), Gaps = 6/326 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GYV+ T VQE +L L +D+ V +QTG+GKT A+ ++ LL + ++ AL Sbjct: 20 GYVDCTPVQEQVLKSSLEGRDLYVQSQTGTGKTAAYLTSVIQELLTRGE----SAGKKAL 75 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELAVQV E + L T + A GGV ++ L+ G I++GTPGR+ D Sbjct: 76 VMVPTRELAVQVQEEAQKLAKFTSLKCASFYGGVGYDKQVASLKKGVDIMIGTPGRVIDL 135 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTL 196 G +++S + +V+DEAD M D+GF D+ ++ P ++R+ ++FSAT++ + L Sbjct: 136 NHGNQMDLSSVAFLVIDEADRMFDMGFYPDLRTLIKVLPSSEQRQTMLFSATLNSYVKNL 195 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 A Y ++ + IA+EN +I V+ D+ ++ I+ + ++ IVFC+T+ S Sbjct: 196 AWEYTRNPAEITIAAENITVDEIAQELFHVSSDDKMKLLLGIISHEKPESLIVFCNTKKS 255 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 K L + F+ + G+L Q++R + + G + +ATDVAARGID+ DL +V Sbjct: 256 CEIVAKRLKMNGFESEFIIGDLPQKKRLTIMDKFKAGAIKCLVATDVAARGIDVNDLAMV 315 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKG 342 I+ +L + EN +HR GRT RAG+ G Sbjct: 316 INYDLPNEAENYVHRIGRTARAGKSG 341 >gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC 51756] gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC 51756] Length = 429 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 179/332 (53%), Gaps = 3/332 (0%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL- 76 RGY T +Q + L+ D+L +AQTG+GKT AF L + L D S P+ Sbjct: 36 RGYEQATPIQARAIPEILKGHDILAAAQTGTGKTAAFALPILHRL--ARDPVSSGPRPVR 93 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 AL + PTRELA QV + + V + IGGV + + L+NGA IVV TPGRL Sbjct: 94 ALILVPTRELAAQVEDNIRLYRGQMPVRSLMLIGGVKIGPQMEQLRNGADIVVATPGRLL 153 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 DH++ + L + ++ +VLDEAD MLD+GF DI I+ P KR+ L+FSAT SP I L Sbjct: 154 DHLQQRSLRLDRVETLVLDEADRMLDMGFIRDIRRIIGMLPAKRQNLLFSATFSPEIRQL 213 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 A+ + V + N I R + V + + +++++ H ++F T+ Sbjct: 214 AEGLLHQPIAVEVTPANATVDSITQRVIRVDQERKRDLLLHLMDAHQWHQVLIFTRTKHG 273 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 R + + F +A+ G SQ R+ AL + G R +ATD+AARGID+ L V Sbjct: 274 ADRLARQMEREGFSAMAIHGNKSQGARTRALAEFKSGSLRALVATDIAARGIDIQRLPRV 333 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ EL E+ +HR GRTGRAG G +V ++ Sbjct: 334 VNFELPQVAEDYVHRIGRTGRAGEDGEAVSLV 365 >gi|15678231|ref|NP_275346.1| EIF-4a family ATP-dependent RNA helicase [Methanothermobacter thermautotrophicus str. Delta H] gi|2621248|gb|AAB84709.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter thermautotrophicus str. Delta H] Length = 425 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 140/408 (34%), Positives = 210/408 (51%), Gaps = 21/408 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL + G+ + T +Q L L DV+ AQTG+GKT AF + + L AE Sbjct: 15 INRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLENLEAER---- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTREL +QV E++ + V V GG S+ + L+ G H++V Sbjct: 71 ---VPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLRRGVHVIVA 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI +++ + VVLDEADEML++GF DDIE IL P++R+ ++FSAT+S Sbjct: 128 TPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFSATVS 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A+ Y ++ + + E + ID D+ + IL + + ++F Sbjct: 188 KPILRIARKYMRNPQVMRV--EKKHSPKIDEFYFKTREEDKVELLDWILSSNNIRMGLIF 245 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V R + L + + G+LSQ +R ++ R G + +ATDVAARGI + Sbjct: 246 CNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAARGIHV 305 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 PD+E V++ +L E +HR GRTGRAG G S ++ + R R+ + Sbjct: 306 PDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGKRIKQS 365 Query: 371 PAPSVEAIR---ERDAQRILQ---------DPLFLDSIQGDEKKMVDV 406 PS E IR E D + IL+ D L+S+ G+ D+ Sbjct: 366 NMPSPEEIRRGYEMDLREILRRNLESKTYSDSEILESLAGEGYSFRDI 413 >gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 506 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 195/341 (57%), Gaps = 6/341 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY T VQ A + L +D++ AQTG+GKT +F L + L R A Sbjct: 28 QAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGRCR---A 84 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L + PTRELA QV E + +++ IGGV + ++ L+ G +++ TP Sbjct: 85 RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATP 144 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL D RGK L +S + +V+DEAD MLD+GF DIE I P R+ L+FSAT+ P Sbjct: 145 GRLLDLFERGKIL-LSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP 203 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI LA + + ++ I+ ++ ID R + V+ + + ++LR AI+FC Sbjct: 204 AIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIFC 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + + +V + L + F V + G++SQ ER + L+ ++G+ V +A+D+AARG+D+ Sbjct: 264 NRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDVK 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 + V + ++ ++P++ +HR GRTGR G G ++ FV P + Sbjct: 324 GISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPAD 364 >gi|322509533|gb|ADX04987.1| Putative ATP-dependent RNA helicase [Acinetobacter baumannii 1656-2] Length = 561 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 196/348 (56%), Gaps = 9/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALA 59 ++ + + +AL G+ N T VQE + L KD+LVS+QTGSGKT AF LA Sbjct: 13 SLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQ 72 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118 T + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ Sbjct: 73 DTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQI 132 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ GA +VV TPGRL D + + L + + A+++DEAD MLDLGF +D+E I D + Sbjct: 133 QQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAAN 191 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237 + + LMFSAT + I LA+ + R+ I + + ++DI + + + Sbjct: 192 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 251 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ Sbjct: 252 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 311 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 312 LVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 359 >gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595] gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 520 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 121/348 (34%), Positives = 194/348 (55%), Gaps = 13/348 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---- 66 I +AL+ +G + +Q L L+ D++ A+TG+GKT+ FG+ + + + Sbjct: 48 IVDALAAKGISHPFPIQALTLPVALKGSDIIGQAKTGTGKTLGFGIPMIERCIGPSEPGF 107 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 D + AP LA+ PTRELA QV ++L + + GG + + +DL+ GA Sbjct: 108 DALAHPGAPQGLAVVPTRELAKQVAQDLRDAAKNRSIRIVEVYGGRAYEPQIKDLEKGAE 167 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGRL D ++ + LN+ ++AVVLDEADEMLDLGF +D+E IL ++P R ++FS Sbjct: 168 IIVGTPGRLIDLMKHRTLNLGAVRAVVLDEADEMLDLGFLEDVEKILSATPPTRHTMLFS 227 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNILR 240 AT+ + +A+ Y A + + + + + + YRA + ++ + IL+ Sbjct: 228 ATMPGPVIAMARRYMSHATHIRAQAHDDESTTVQSVRQVVYRAHAL---NKIEVLARILQ 284 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G I+F T+ + +R + LA F AL G+L Q R AL+ R G+ V +A Sbjct: 285 ARGRGLTIIFTRTKRTAARVAEDLAARGFATGALHGDLGQGAREQALRAFRHGKIDVLVA 344 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ ++ VI+ + + + +HR GRTGRAG G ++ + Sbjct: 345 TDVAARGIDVDNVTHVINYQAPEDEKTYVHRIGRTGRAGHSGTAITFV 392 >gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 506 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 195/341 (57%), Gaps = 6/341 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY T VQ A + L +D++ AQTG+GKT +F L + L R A Sbjct: 28 QAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGRCR---A 84 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L + PTRELA QV E + +++ IGGV + ++ L+ G +++ TP Sbjct: 85 RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATP 144 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL D RGK L +S + +V+DEAD MLD+GF DIE I P R+ L+FSAT+ P Sbjct: 145 GRLLDLFERGKIL-LSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP 203 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI LA + + ++ I+ ++ ID R + V+ + + ++LR AI+FC Sbjct: 204 AIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIFC 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + + +V + L + F V + G++SQ ER + L+ ++G+ V +A+D+AARG+D+ Sbjct: 264 NRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDVK 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 + V + ++ ++P++ +HR GRTGR G G ++ FV P + Sbjct: 324 GISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPAD 364 >gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10] gi|160358659|sp|A6RW56|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3 gi|150848381|gb|EDN23574.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10] Length = 486 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 191/340 (56%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L+ +D++ A+TGSGKT AF L + LL D+ P Sbjct: 73 EACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALL---DKPQPL 129 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+ ++ E L + V AV +GG+ + + L HI+V TP Sbjct: 130 ---FGLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPHIIVATP 186 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +V+DEAD +LDL F ++ IL P++RR +FSATIS Sbjct: 187 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATISS 246 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + KD +RV+I+S Q S + + + L +D ++ +L ++AI+F Sbjct: 247 KVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLIHKDTYLIYLLNEFAGQSAIIF 306 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 307 TRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDI 366 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ ++ + + +HR GRT RAG+ G ++ V+ Q Sbjct: 367 PSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQ 406 >gi|94969920|ref|YP_591968.1| DEAD/DEAH box helicase-like [Candidatus Koribacter versatilis Ellin345] gi|94551970|gb|ABF41894.1| DEAD/DEAH box helicase-like protein [Candidatus Koribacter versatilis Ellin345] Length = 423 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 200/350 (57%), Gaps = 8/350 (2%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 + F ++P V+ + L ++N T VQE + P L +D+L +AQTG+GKT+AF + Sbjct: 26 LTTFNDMPLSDVLKQRLEAAQFINPTPVQEKAIPPALDGRDILATAQTGTGKTLAFIIPA 85 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 L R + L + PTRELA+QV E L K A+ +GG S + Sbjct: 86 LEML-----RDTEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGGTSERNQI 140 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + +++GA +VV TPGRL D++ + +++S ++ +VLDEAD M+D+GF I+ IL + P+ Sbjct: 141 QSIRSGARVVVATPGRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPR 200 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 ++ L FSAT+ PA++ + ++ +AVRV I S + + ++ A+ V + + +A+ + Sbjct: 201 DKQTLCFSATMGPAVSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKDALRQL 260 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L Y +VF T+ R K L F + G+ SQ +R+ AL G +V Sbjct: 261 L-YEQEGKTLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFDKGSIKVL 319 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARG+D+ D+ VI+ +L PE+ +HR GRTGRAG GM+ ++ Sbjct: 320 VATDVAARGLDVDDIAHVINFDLPQVPEDFIHRVGRTGRAGATGMATSLV 369 >gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] Length = 496 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 187/351 (53%), Gaps = 7/351 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69 I +A+ E+GY + +Q + + KDV+ +AQTG+GKT F L L L +F Sbjct: 12 ILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSNGPKRKF 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A L + PTRELA QV +E + V GGV V+ + + L+ G ++V Sbjct: 72 NQVRA---LVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVDVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI+ IL PK R+ L+FSAT Sbjct: 129 ATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK KD V +++A N ++ ++ + + +++ + K +V Sbjct: 189 SDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDNDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L E A+ G SQ R+ AL + G+ RV +ATD+AARG+D Sbjct: 249 FSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATDIAARGLD 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 + L VI+ +L PE+ +HR GRTGRAG G ++ + ++ A+ LF Sbjct: 309 IEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSED---EAKELF 356 >gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110] gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110] Length = 478 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 227/460 (49%), Gaps = 26/460 (5%) Query: 4 FENIPQVIGEA----LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 FEN+ + EA L G+ + T +QE + L DVL +QTG+GKT A+ L + Sbjct: 5 FENLG--LSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLPIL 62 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + N AL + PTRELA QV L+ + + + GG S+ R+ R Sbjct: 63 EQIDTRNSNVQ------ALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIR 116 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G IVVGTPGR+ D + K L + L+ VLDEADEML +GF DD++ IL +P Sbjct: 117 SLERGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDA 176 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNI 238 R FSAT+ I L + K V V++ + ID +V + A+ I Sbjct: 177 RNTACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKALQPI 236 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L ++AI+F T+ + S T L E V G LSQ +R + RDG+ ++ Sbjct: 237 LEIEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRDGKIKLV 296 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRR 355 +ATD+AARG+D+ +L VI+ +L N E +HR GRTGRAG+ G ++ +I + M R+ Sbjct: 297 VATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPIDRRMVRQ 356 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415 E+ R+ + VEA R Q +++ L + + +V L ++DP+ Sbjct: 357 IEKRLRQKLETCKLPSRSQVEAKRLEKLQNQIKESLAGERM-ASFLPLVRELSDEYDPQA 415 Query: 416 IAAGFLRIHRAGLC---------APEEITPVSLVSGRDRF 446 IAA L++ C PE P ++ + ++ Sbjct: 416 IAAAALQMIYDQDCPDWMKTDWEVPESTVPKPIIKRKGKY 455 >gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera genomosp. type_1 str. 28L] Length = 520 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 202/363 (55%), Gaps = 9/363 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F+N I +VI +AL+ G+ T +Q + L+ D++ AQTG+GKT AFG+ + Sbjct: 5 FQNLKISEVILQALNAMGFEEPTPIQAESIPVALQGADMIGQAQTGTGKTAAFGIPVLEK 64 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +L + P + + ++PTRELA+QV EL L T + GG + R+ R L Sbjct: 65 IL----KNEPTQSIQTVVLSPTRELAMQVAEELNHLAQCTTIQALPIYGGQDMERQLRRL 120 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + I+V TPGRL DH++ +++S + +VLDEADEMLD+GF DDI I+ ++P R+ Sbjct: 121 RKHPQIIVATPGRLMDHMKRGTIDLSDIHTIVLDEADEMLDMGFIDDINTIMSATPDTRQ 180 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSAT+ I LA+ + + + + ++ I+ + + + + +L Sbjct: 181 TLLFSATMPKPIQQLAETFLHEPQIIRMKAKEVTMDLIEQSYIETPDRQKFDVLCRLLDL 240 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 AI+F T+ V + L + + + G+L+Q +R + ++ R+ + +AT Sbjct: 241 QEPDLAIIFVRTKRRVDEVAEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILVAT 300 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ--RRAER 358 DVAARG+D+ + V + +L +PE+ +HR GRTGRAG+ G + FVIP+ M+ R ER Sbjct: 301 DVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKSGEATTFVIPREMEHLRAIER 360 Query: 359 LFR 361 L + Sbjct: 361 LIK 363 >gi|269468447|gb|EEZ80112.1| hypothetical protein Sup05_1361 [uncultured SUP05 cluster bacterium] Length = 461 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 197/361 (54%), Gaps = 7/361 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY ++T +Q+ L L KDV+ +TGSGKT AFGL L L ++ F S Sbjct: 19 LATLGYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQKLDVKS--FKAQS- 75 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + + PTRELA QV E+ L A + V GG + L++G HIVVGTPG Sbjct: 76 ---IVLCPTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLEHGVHIVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + + +VLDEAD MLD+GF+D I+ I++ P KR+ L+FSAT I Sbjct: 133 RIEEHLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQTLLFSATFPNEI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++A+ ++ V S + + + Y + DR A+ +L H ++ ++FC+T Sbjct: 193 ASIAERVMQNPTMVEAPSTHEESTIKQYFYKANSADDRMTALRLLLAKHKPESVLIFCNT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L + F +A+ G+L Q+ER AL + V +ATDVAARG+D+ L Sbjct: 253 KIDTQDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVLVATDVAARGLDIDAL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 ++V++ ++ +PE +HR GRTGRAGR G++ + + + L + + +P P Sbjct: 313 DMVVNFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDALELDIDFDRYTDPLP 372 Query: 374 S 374 S Sbjct: 373 S 373 >gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] Length = 456 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 121/352 (34%), Positives = 199/352 (56%), Gaps = 3/352 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66 P+++ A+ E+GY T +Q + L +D+L +AQTG+GKT AF L + L + Sbjct: 10 PEIL-RAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILERLKKFAS 68 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 SPA P+ AL ++PTRELA Q+ + V GG+++ + ++L+ G Sbjct: 69 TSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQTQELRRGV 128 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ K + ++ + +VLDEAD MLD+GF +DI IL P+ R+ L+F Sbjct: 129 EILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLPRTRQTLLF 188 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT +P I LA+ + D V +A +N ++ ++ V + + +++R Sbjct: 189 SATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQRKRYLLSHLIRERQMG 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFC T+ S + + L A+ G+ +Q R L ++G +V +ATDVAA Sbjct: 249 QVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGEVKVLVATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 RG+D+ +L V++ EL + PE+ +HR GRTGRAG G+++ ++ Q+ ++ E Sbjct: 309 RGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDEGKQLE 360 >gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens] gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens] Length = 424 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 193/341 (56%), Gaps = 10/341 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q + L KD++ A+TGSGKT AF L + LL + R AL + PT Sbjct: 19 TKIQCEAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDKPQRL------FALILTPT 72 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGK 142 RELA Q+ ++E L + GV AV IGG+ + + L HI++GTPGRL DH+ K Sbjct: 73 RELAFQISEQIEALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHIIIGTPGRLADHLANTK 132 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G ++ LK +V+DEAD +L++ F +++ IL PK+RR +FSAT++ + L + + Sbjct: 133 GFSLRPLKYLVMDEADRILNMDFEAEVDKILSVLPKERRTYLFSATMTKKVKKLQRASVQ 192 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 D V++ ++++ + + V +D +V+IL + +VFC+T + R Sbjct: 193 DPVKIEVSTKYTTVEKLQQTYIFVPAKYKDCYLVSILNELAGNSFMVFCATCINTQRIGL 252 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 +L F + L G++SQ +R AL + + + +ATDVA+RG+D+P +++VI+ + Sbjct: 253 MLRNLGFNAIPLHGQMSQSKRLGALHKFKSKESSILVATDVASRGLDIPHVDIVINFDAP 312 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 S+ ++ +HR GRT RAGR G S+ + Q + +R E+L Sbjct: 313 SHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQLI 353 >gi|292488330|ref|YP_003531212.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430] gi|292899529|ref|YP_003538898.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946] gi|291199377|emb|CBJ46494.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946] gi|291553759|emb|CBA20804.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430] Length = 459 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 206/378 (54%), Gaps = 21/378 (5%) Query: 1 MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 M F + Q+ + L+E GY+ +T VQ L L +DV A+TGSGKT AFGL Sbjct: 1 MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 + + A AL + PTRELA QV +EL L + ++ +C GG V Sbjct: 61 VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLC-GGQPVG 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 +R L + HIVVGTPGR+ DH++ + L + + +VLDEAD ML++GFR+DI+ I+ Sbjct: 114 AQRDSLLHAPHIVVGTPGRILDHLQRETLKLDAINTLVLDEADRMLEMGFREDIDAIISH 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRD 232 SP+ R+ L+FSAT AI ++++ Q++ + + E SD I+ A ++ Sbjct: 174 SPQTRQTLLFSATWPQAIAQISQSIQRNPLTI----ETGDVSDLPAIEQTFYEAASREKL 229 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 A++ +L + +VFC+T+ L + L G+L Q+ER L + Sbjct: 230 TALIGLLSERQPSSCVVFCNTKRECDDIAYALDKAQISAQPLHGDLEQRERDQMLIRFAN 289 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 G RV +ATDVAARG+D+ L +V++ +LS +PE +HR GRT RAG++G +V FV P Sbjct: 290 GSCRVLVATDVAARGLDIKALPMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVSPDE 349 Query: 352 MQRRAERLFREANVSVVW 369 M RA L +VW Sbjct: 350 M-IRAHALEDYLQQKLVW 366 >gi|162149460|ref|YP_001603921.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5] gi|161788037|emb|CAP57641.1| putative ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5] Length = 429 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 128/332 (38%), Positives = 181/332 (54%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E GY N T +Q + L +D+L AQTG+GKT AF L L L A R +P Sbjct: 19 ALAEEGYANPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLLHRL-AMAPRPAPKG 77 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L +APTREL Q+ V GGVS + L+ G I+V PG Sbjct: 78 GARVLVLAPTRELVSQIADGFTSFGRHQPPSVTTIFGGVSQFHQVNALKAGVDIIVAAPG 137 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D I ++S L+A+VLDEAD+MLD+GF IE I+ + PK R ++FSAT+ +I Sbjct: 138 RLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDRHTVLFSATMPKSI 197 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA++ +D +V IA + I+ + V +D+ A++++LR G A+VF Sbjct: 198 AALAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLSMLRTPGIGQAVVFTLQ 257 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + E AL G SQ +R AL R G A+V +ATD+AARGID+ + Sbjct: 258 KNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRAGTAQVLVATDIAARGIDVDTV 317 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V + +L S PE+ +HR GRTGRAGR G ++ Sbjct: 318 THVFNHDLPSLPESYVHRIGRTGRAGRNGFAI 349 >gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 521 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 189/347 (54%), Gaps = 10/347 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+++ GY T +Q + L +D+ AQTG+GKT +F L + S L Sbjct: 15 LSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGR 74 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P L + PTRELA QV E + VA+ IGGVS + R L+ GA Sbjct: 75 AR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGAD 131 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH L +S ++ +V+DEAD MLD+GF DIE I P R+ L FS Sbjct: 132 VLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----Y 241 AT+ I LA + ++ R+ +A + R VA +D +LR Sbjct: 192 ATMPSEIQKLADRFLQNPERIEVAKPASAAETVTQR--FVASHGKDYEKRAVLRELVRAQ 249 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 KNAIVFC+ + V+ + L H F V AL G++ Q+ R+ LQ RDG ++ +A+ Sbjct: 250 TELKNAIVFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 309 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARG+D+PD+ V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 310 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 356 >gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107] gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107] Length = 467 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 199/366 (54%), Gaps = 9/366 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++ E GY++ T +Q + L+ KD++ SAQTG+GKT AF L + L E+ P Sbjct: 47 SIREAGYLSPTPIQTLTIPEVLQGKDIMASAQTGTGKTAAFILPIIELLRVED---KPKR 103 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + +L + PTRELA QV + G+ GGVS+ + + LQ G I+V TP Sbjct: 104 LQVHSLILTPTRELAAQVEANAKGYTKYLGIRSDAVFGGVSIRPQVKRLQGGVDILVATP 163 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I K + +LK +VLDEAD MLD+GF DI+ +++ PKKR+ +MFSAT S Sbjct: 164 GRLLDLINQKTIRFDNLKILVLDEADRMLDMGFIRDIKKVIEFLPKKRQNMMFSATFSAP 223 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA D V + + +N+ I++ ++ + + + ++++ + K +VF Sbjct: 224 IKKLALGLLNDPVEIKASVQNKAAPTIEHLVHPCDMARKVDLLCHLIKTNEWKQVLVFAR 283 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + K+L + A+ G SQ R+ AL+ ++G ++ +ATD+AARGID+ Sbjct: 284 TKHGADKVVKILCHQHIKASAIHGNKSQGARTRALEGFKNGDVKILVATDIAARGIDIHQ 343 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L + E+ +HR GRTGRAG G ++ ++ E L +A + P Sbjct: 344 LPYVINLDLPNVAEDYVHRIGRTGRAGENGHAISLVAAE-----EALLLKAIEKFIGNPL 398 Query: 373 PSVEAI 378 P V + Sbjct: 399 PKVAVV 404 >gi|254229148|ref|ZP_04922567.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] gi|262395499|ref|YP_003287352.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|151938233|gb|EDN57072.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] gi|262339093|gb|ACY52887.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] Length = 419 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 185/339 (54%), Gaps = 4/339 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q + E LS V T VQE + L K++L +AQTG+GKT AFGL + T+ + Sbjct: 10 IEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPIIQTV--QQ 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + P AL + PTRELA QV L A+T + + GG S+ ++R L+ GA Sbjct: 68 KKLN--GTPQALVLVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQKRKLEEGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH+ +NIS +VLDEAD MLD+GF D++ I P ++++L+FS Sbjct: 126 ILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I T+A + V V ++ N + V + + ++ + Sbjct: 186 ATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ K L + V+++G+ SQ R AL + G+ R IATDVAAR Sbjct: 246 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+D+ +LE V++ ++ E+ +HR GRTGRAG+ G++V Sbjct: 306 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAV 344 >gi|332856302|ref|ZP_08436187.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150] gi|332727108|gb|EGJ58577.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150] Length = 475 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 196/348 (56%), Gaps = 9/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALA 59 ++ + + +AL G+ N T VQE + L KD+LVS+QTGSGKT AF LA Sbjct: 9 SLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQ 68 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118 T + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ Sbjct: 69 DTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQI 128 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ GA +VV TPGRL D + + L + + A+++DEAD MLDLGF +D+E I D + Sbjct: 129 QQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAAN 187 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237 + + LMFSAT + I LA+ + R+ I + + ++DI + + + Sbjct: 188 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 247 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ Sbjct: 248 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 307 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 308 LVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355 >gi|56413419|ref|YP_150494.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362342|ref|YP_002141979.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127676|gb|AAV77182.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093819|emb|CAR59302.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 457 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 202/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVSLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT A Sbjct: 131 GRQLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ +R+ I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|298711460|emb|CBJ32599.1| DEAD box helicase [Ectocarpus siliculosus] Length = 848 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 187/339 (55%), Gaps = 7/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA ++ G+ + T +Q L KDV+ A+TGSGKT AF L + LL R Sbjct: 419 EAAAQLGWTHATEIQRQALPLAFEGKDVIGLAETGSGKTGAFALPILQALLENPQRL--- 475 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ +APTRELA Q+ +E L G+ +GG+ + ++ L H+V+ TP Sbjct: 476 ---FAVIMAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALALKPHVVIATP 532 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ K +VLDEAD ML + F ++I +L P++RR +FSAT++ Sbjct: 533 GRLVDHLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVLPRERRTFLFSATMTS 592 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + K+ RV +A++ + + + + +D + +L ++ IVF Sbjct: 593 KVAKLQRASLKNPARVEVANKFSTPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFV 652 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 ST + R +L FQ V L G++ Q +R AL + G+ V IATDVA+RG+D+P Sbjct: 653 STCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIP 712 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ++LV++ E+ S+ ++ +HR GRT RAGR G S+ + Q Sbjct: 713 SVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQ 751 >gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 511 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 191/358 (53%), Gaps = 17/358 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ +GY + +Q + L KDV+ +AQTG+GKT F L L LL++ + +PA Sbjct: 14 KAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLSKGTK-APA 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QVG +E + AV GGV + + L G I+V TP Sbjct: 72 KQVRALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKLNRGVDILVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + L+ S L+ +VLDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 132 GRLLDLYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFSATFSDD 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK + V +++ N + + V S + +V +++ + + +VF Sbjct: 192 IRQLAKGLVNNPVEISVTPRNATANTVQQWVCPVDQSQKTAVLVKLIKQNDWQQVLVFSR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R K L A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 252 TKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAARGLDIDQ 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRR 355 L V++ +L + PE+ +HR GRTGRAG G +V +I QN++RR Sbjct: 312 LPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSNEETKLLRDIELLIKQNLERR 369 >gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus hydrogenoformans Z-2901] gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus hydrogenoformans Z-2901] Length = 430 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 132/397 (33%), Positives = 213/397 (53%), Gaps = 24/397 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ G+ T +Q+ + L +++ A TG+GKT A+ LL R Sbjct: 15 KAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAY-------LLPVLQRIQRG 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA+QV E+ L V GG ++ R+ R L+ G ++VGTP Sbjct: 68 KKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI K + +K V+LDEADEMLD+GF DDIE IL++ +++ L+FSAT+ Sbjct: 128 GRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAP 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I T+ K + V + + I + +++ +V+IL AIVFC Sbjct: 188 IKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFCR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L + L G++SQ+ER+ ++ + G+ + +ATDVAARG+D+PD Sbjct: 248 TKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPD 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ NPE+ +HR GRTGRAGR+G ++ +I +RE + E Sbjct: 308 VSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLIN----------YRERKLLKAIE-- 355 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVL 407 EAI +R + IL +P+ L+ + + KK++D + Sbjct: 356 ---EAINKRLKREILPEPVDLEEARFKKIAKKILDTI 389 >gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100] gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 494 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 127/346 (36%), Positives = 195/346 (56%), Gaps = 10/346 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T +Q + L +DV+ AQTG+GKT +F L L + L R A Sbjct: 15 AIDAAGYTTPTPIQAQAIPFALEGRDVVGIAQTGTGKTASFVLPLLNMLEQGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P +L + PTRELA QV E L ++ + VA+ IGGVS + + L+ GA I++ TPG Sbjct: 72 MPRSLILEPTRELAAQVAEAFETLGSQHKLTVALLIGGVSFDDQEKKLERGADILIATPG 131 Query: 134 RLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 RL DH RGK L ++ + +V+DEAD MLD+GF DIE I P R+ L FSAT+ P Sbjct: 132 RLLDHFGRGK-LLMNAVDYLVIDEADRMLDMGFIPDIERICKLLPPSRQTLFFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGA--KNAI 248 I L + K+ +V +++ +I + + + + ++R + +NAI Sbjct: 191 IQKLTDQFLKNPEQVRVSAPATAAKNITQKLKFSPADSKTKRHVLRELMRSEVSTIQNAI 250 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ + V+ K L +H F AL G+L Q++R+ L+ R G A+DVAARG+ Sbjct: 251 IFCNRKRDVAVLHKSLVKHGFNAGALHGDLDQRQRTATLEAFRKGEITYLAASDVAARGL 310 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353 D+P++ V + ++ +PE+ +HR GRTGRAGR G + ++ P+ M+ Sbjct: 311 DIPEVSHVFNFDVPISPEDYVHRIGRTGRAGRDGYAAMIVTPKEMK 356 >gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 524 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 149/509 (29%), Positives = 252/509 (49%), Gaps = 35/509 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ G+ + +Q ++ L DV+ AQTG+GKT+AFG + S + + + S Sbjct: 15 ILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGAPVLSRIRSSEGKIS 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 ++ + PTRELA+QV EL + T + + GG + R+ L+ G IVVG Sbjct: 75 ------SIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALRRGIDIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D IR K LN+ +K +VLDEADEML++GF DDIE I+ +S + R+ ++FSAT+ Sbjct: 129 TPGRVLDLIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQTMLFSATMP 188 Query: 191 PAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LAK Y K + + I + +D + DR + IL +AI+ Sbjct: 189 EEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRILDVDEPTSAII 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ +V + L + + G+++Q +R N L+ ++G IATDVAARGID Sbjct: 249 FCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGSLEFLIATDVAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + ++ VI+ +L + E+ +HR GRTGRA RKG++ ++ + + + + Sbjct: 309 VENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKHIEKVTKSKIRR 368 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGFLRIHR 425 P+V+ I + + ++++ D K + + D E ++AA + Sbjct: 369 REIPTVDEIFVSKYKNMFSK--IKETLEQDSYKKFIPMATELDEEFNLVEVAAALM---- 422 Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485 +V ++ D + GS+ ++K L+VG K R L+ Sbjct: 423 ------------DMVYSKEVNYDYTEN---EIGSKTDYK---RLFLNVGRLDKINPRKLV 464 Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVS 514 ++ + R+ +G I + +FV V+ Sbjct: 465 DFFNENAKVKREDVGDIDILEKFSFVNVT 493 >gi|307729303|ref|YP_003906527.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1003] gi|307583838|gb|ADN57236.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003] Length = 530 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 144/403 (35%), Positives = 211/403 (52%), Gaps = 55/403 (13%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS--- 70 AL+ GY N T VQ+ + + +D+LVS+ TGSGKT AF +L +RFS Sbjct: 62 ALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAF-------MLPAIERFSQLQ 114 Query: 71 ----------------------PASAPLALAIAPTRELAVQV-------GRELEWLYAKT 101 P + P L + PTRELA+QV G+ L+ L + Sbjct: 115 KAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS 174 Query: 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161 +GGV+ ++ L I+V TPGRL DH+ +++S L+ +VLDEAD ML Sbjct: 175 ------ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 228 Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221 D+GF +DIE I+ ++P R+ ++FSAT+ I +L KD R+ I Q ++I Sbjct: 229 DMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQ 288 Query: 222 RAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280 V D +D + ++LR G AIVF +T+ + LA+ F+ AL G+L Q Sbjct: 289 TVHYVDDRDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQ 348 Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340 R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR Sbjct: 349 GARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGR 408 Query: 341 KGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP---APS 374 G++V ++ Q +R ER R NV +EP APS Sbjct: 409 SGIAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRKSAPS 451 >gi|227496195|ref|ZP_03926501.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434] gi|226834278|gb|EEH66661.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434] Length = 762 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +A+++ GYV T++Q + L +DV+ AQTG+GKT AFGL L + A Sbjct: 128 GLPADLLKAVTDMGYVTPTAIQREAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDAVDAR 187 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 + AL +APTRELA+Q + + +++ G+ V GG + L++G Sbjct: 188 DGEVQ------ALVLAPTRELALQSAEAITDMASRSRGLDVVAVYGGAPYGPQIGALKSG 241 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D I L + ++ VLDEADEML +GF +D+E I S P +RR + Sbjct: 242 AQVVVGTPGRVIDLIDKGALRLGAVRYFVLDEADEMLRMGFAEDVETIAASLPAERRTAL 301 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ PAI +A+ + D RV ++ ++ + +V + A+ +L A Sbjct: 302 FSATMPPAIQAVARQHLSDPARVEVSRQSSTVDTVHQTYAVVPFRHKVGAVSRVLATTEA 361 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF T+++ LA Q A+SG++ Q+ER ++ +R G V +ATDVA Sbjct: 362 EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRSGTLDVLVATDVA 421 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 ARG+D+ + LV++ ++ E +HR GRTGRAGR G +V F+ P+ R+ ERL Sbjct: 422 ARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERL 479 >gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] Length = 436 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 200/375 (53%), Gaps = 23/375 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---- 63 P+++ + L+ GY T +Q + L +D++ AQTGSGKT AF L + L Sbjct: 20 PELL-QVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFSLPILHKLTEPLL 78 Query: 64 -------AENDRFSPASAPL-----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111 E++ S + P AL + PTRELA+QV T + A+ GG Sbjct: 79 RLDEKNQQESEAPSCSQVPAIRAIRALVLTPTRELALQVHGSFVKYAKLTQLKSALVYGG 138 Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171 VS+ + + L G I+V TPGRL DH+R +++S L+ +V DEAD MLD+GF+D+I+ Sbjct: 139 VSIDAQAQILAAGVDILVATPGRLLDHLRRGSMSLSELEFLVFDEADRMLDMGFKDEIDA 198 Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 I+ PK R+ L+FSAT ++ L+++ +D R+ + N +I+ R V SDR Sbjct: 199 IVKQLPKTRQTLLFSATFDESLYGLSQSLLRDPKRIEVGERNAAAVEIEQRVYAVD-SDR 257 Query: 232 DNAIVNILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 A++ L G + ++F + + + L + A G+LSQ R LQ Sbjct: 258 KLALITHLIESGKLQQVLIFSRKKVAADKLAANLTKAGIGAQAFHGDLSQGAREKVLQSF 317 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +DG RV +ATDVAARGID+ DL V++ EL E+ +HR GRTGRAG KG+++ + Sbjct: 318 KDGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHRIGRTGRAGNKGVAITL--- 374 Query: 351 NMQRRAERLFREANV 365 + R E L E V Sbjct: 375 -LCREDEHLLEEVEV 388 >gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 654 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 129/343 (37%), Positives = 196/343 (57%), Gaps = 14/343 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-----LAENDRF 69 L ++G+ L ++Q L L KDV+ A+TG GKT+AF L + + + N R Sbjct: 98 LRKKGFDALFAIQAETLEIALSGKDVVGRARTGCGKTLAFVLPIVEEMAKISPMPANGRR 157 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR-DLQNGAHIV 128 P+ + +APTRELA QV + +W+ G +VC+ G + +RE+ L+ G +V Sbjct: 158 VQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFK-SVCVYGGTPYREQEMGLRGGCDVV 216 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 +GTPGR+ DH+ K L + LK VLDEADEML++GF DD+E IL SS + L+FSAT Sbjct: 217 IGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELILKSS-GDVQTLLFSAT 275 Query: 189 ISPAITTLAKNYQK-DAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYH--G 243 + P + +AK + K D V++ + +Q + + + + SDR + + +++R G Sbjct: 276 LPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHMLLPCQWSDRVDLVCDVIRSKAPG 335 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVFC T+ L + + + AL G++SQ +R L R+ + +V +ATD Sbjct: 336 GGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQREVVLAGFREDKFQVLVATD 395 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ +ELVI E + E +HRSGRTGRAG G+SV Sbjct: 396 VAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISV 438 >gi|149187764|ref|ZP_01866061.1| ATP-dependent RNA helicase [Vibrio shilonii AK1] gi|148838644|gb|EDL55584.1| ATP-dependent RNA helicase [Vibrio shilonii AK1] Length = 430 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 196/383 (51%), Gaps = 7/383 (1%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-R 68 I + L+ Y + T +Q + L KD+L AQTG+GKT AFGL L + E R Sbjct: 24 TIHQNLAALNYESPTPIQARAIPYVLDGKDILAGAQTGTGKTAAFGLPLIHKIAQEPKVR 83 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 S + +L + PTRELA QV L L TG+ V V GG S+ + ++L GA I+ Sbjct: 84 ESNSKVIRSLVLTPTRELAQQVFDSLVPLAKDTGLKVVVAYGGTSMGVQTKNLVGGADIL 143 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH + + +S + ++LDEAD MLD+GF D+ IL PK+R+ +MFSAT Sbjct: 144 VATPGRLLDHQHNRNITLSECEYLILDEADRMLDMGFMPDLNRILKRLPKERQNMMFSAT 203 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 I TLA + + V + N + V + + ++ + + Sbjct: 204 FEQRIKTLAHRIMNEPIEVQVTPANSTADTVKQMVYPVDKKRKHELLAYLIGSRNWQQVL 263 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ K L V+++G+ SQ R AL + G+ R IATDVAARG+ Sbjct: 264 VFTKTKQGSDALAKELKLDGINAVSINGDKSQGARQKALDDFKSGKVRALIATDVAARGL 323 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANVS 366 D+ LE V++ EL E+ +HR GRTGRAG G +V ++ + Q E + R + + Sbjct: 324 DIQQLEQVVNFELPYKAEDYIHRIGRTGRAGHAGFAVSLMSHDEQYLLEAIERLLDTRLP 383 Query: 367 VVW----EPAPSVEAIRERDAQR 385 W EP+P+ E +R +R Sbjct: 384 QEWLAGFEPSPASEVEPDRAPRR 406 >gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium HTCC2150] gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium HTCC2150] Length = 574 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 199/378 (52%), Gaps = 18/378 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A++E GY + T +Q + P L KDVL AQTG+GKT +F L + S L Sbjct: 11 PKVL-KAVAETGYESPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMISLLSKGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L +APTRELA QV + + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLAPTRELAAQVAENFDAYSKYSKLTKALLIGGVSFKEQDKLIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH+ L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHVERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFKLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-------VALSDRDNAIVNILR 240 T++P I + + V+V +A I + D+ N + + Sbjct: 187 TMAPEIERITNTFLSAPVKVEVARAATTSETITQGLIWHEPKRREFGAKDKRNILRATIE 246 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAI+FC+ + V K L +H + + G+L Q R L R+G R Sbjct: 247 AEGEKCTNAIIFCNRKVEVDIVAKSLKKHGYNAEPIHGDLDQSHRMKVLNGFREGEIRFL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQRRA- 356 A+DVAARG+D+P++ V + ++ + E+ +HR GRTGRAGR G + + P + ++ A Sbjct: 307 CASDVAARGLDIPNVSHVFNFDVPGHAEDYVHRIGRTGRAGRTGTAFTIATPNDAKQLAA 366 Query: 357 -ERLFREA--NVSVVWEP 371 E L + A V W P Sbjct: 367 VEELVKMAIPRVENPWSP 384 >gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205] Length = 598 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 122/345 (35%), Positives = 198/345 (57%), Gaps = 9/345 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ EAL E GY + +Q A + + +D++ AQTG+GKT AF L + + L E Sbjct: 40 PEIL-EALEEIGYSEPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPMLAAL-DETQ 97 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDLQNGAH 126 R P L + PTRELA+QV + K + + + G S R++ L+ G Sbjct: 98 R-----TPQVLVLTPTRELAIQVADSFKSYATKLPHLRVLPVYGGSDFRDQIHKLKRGVQ 152 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+R L++S L+++VLDEADEML +GF DD+E++L P+KR++++FS Sbjct: 153 VVVGTPGRVMDHMRQGTLDVSGLRSLVLDEADEMLRMGFIDDVEWVLSQLPEKRQVVLFS 212 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I ++ Y + I ++ S I R + V + A+ +L + Sbjct: 213 ATMPSEIRRISHQYLNSPAEITIKTKGSDSSRIQQRFITVNGPMKLEALSRVLEAETKEG 272 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+A + L + V L+G+++Q +R ++ +++G V +ATDVAAR Sbjct: 273 VIIFARTKAITVTVAEALEAKGYGVAVLNGDVAQSQRERTIERLKNGTVDVLVATDVAAR 332 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 G+D+ + LVI+ ++ + E +HR GRTGRAGR G ++ FV P+ Sbjct: 333 GLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRTGNAILFVTPR 377 >gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus GRL 1112] gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus 30SC] gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus GRL 1112] gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus 30SC] gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus GRL 1118] Length = 497 Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 233/458 (50%), Gaps = 17/458 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + T+ + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPILQTIDKKE------ 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131 A A+ I PTRELA+Q EL L V V GG + R+ R L++ I+VGT Sbjct: 68 KAIQAIIIEPTRELAIQTQEELFRLGRDEHTHVQVVYGGADIGRQIRSLKHHVPSILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ +N+ +KAVVLDEADEMLD+GF DIE IL + +++ L+FSAT+ Sbjct: 128 PGRLLDHLKRGTINLDKVKAVVLDEADEMLDMGFIQDIESILKYAKNRKQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + V I ++ ID V S++ + + ++ G A+VF Sbjct: 188 PILRIGEKFMNHPKIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R L+ R+G+ + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSVV 368 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + R E+L ++ + Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTQKKMSPL- 366 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-IHRAG 427 P +A R + Q + ++ G + LL + + A FL+ + + Sbjct: 367 -RPPTDAQAFRGQLKQAEAEIEDLMNGDLGKYTQEASELLDNYSALDLVAAFLKNLSKDS 425 Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465 +ITP + ++ D R + G G N +G Sbjct: 426 TDVKVKITPEKPLP----YKGDGRHHRGGRGKGRNNRG 459 >gi|293610799|ref|ZP_06693099.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827143|gb|EFF85508.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 639 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 127/345 (36%), Positives = 195/345 (56%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 35 ETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQETF 94 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 95 VPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 154 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA ++V TPGRL D + + L + ++A+++DEAD MLDLGF +D+E I D + +R+ Sbjct: 155 K-GAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAISDLAGNRRQ 213 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ + R+ I + + ++DI + + + L Sbjct: 214 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 273 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 274 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 333 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 334 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 378 >gi|168704554|ref|ZP_02736831.1| ATP-dependent RNA helicase [Gemmata obscuriglobus UQM 2246] Length = 523 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 190/363 (52%), Gaps = 16/363 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY N T +QE ++ P LR KDV+ AQTG+GKT AF L+ +R+ P Sbjct: 99 DAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAF-------LIPFLNRWRPH 151 Query: 73 S--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P+ + + PTRELA+Q+ E E L GG + R+ L G +VVG Sbjct: 152 TLKGPIGVVMTPTRELALQIANEAEKLAPSKRFRCVPVYGGTGMQRQLDGLTRGCDLVVG 211 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH++ +++S ++ VLDEAD MLD+GFRDDIE IL P +R+ L+ SAT+ Sbjct: 212 TPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQTLLMSATVP 271 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +I L Y +D V +++ E I V + + ++ + ++F Sbjct: 272 DSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKPRQCLIF 331 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 + + L + + + G+L Q +R + R + IATDV +RGID+ Sbjct: 332 VERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVMSRGIDV 391 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ------NMQRRAERLFREA 363 L VI+ +L + EN +HR GRTGR G+ G+++ FV+P+ N++ RL E Sbjct: 392 SGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIEMMINRLIEED 451 Query: 364 NVS 366 V Sbjct: 452 RVE 454 >gi|194334361|ref|YP_002016221.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194312179|gb|ACF46574.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii DSM 271] Length = 418 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 125/340 (36%), Positives = 184/340 (54%), Gaps = 1/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I AL E GY T +Q + L D+L AQTG+GKT AF + L LL+E Sbjct: 7 NIIDPIARALREEGYATPTPIQAEAIPVILEGSDLLGCAQTGTGKTAAFAIPLLQ-LLSE 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + AL + PTRELA+Q+G + TG+ V GGV+ + + L+NG Sbjct: 66 RNTYEKKRKIRALVVTPTRELAIQIGESFKAYGRHTGLTNRVIFGGVNQNPQAASLRNGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL D + L++ ++ +VLDEAD MLD+GF DI IL + P+K++ L F Sbjct: 126 DIVVATPGRLLDLMGQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPEKKQSLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA + +V++ + I + V +++ +V++L+ K Sbjct: 186 SATMPSEIVRLAGTILHNPAKVSVTPVSSTVETIQQQVYFVDKGNKNRLLVHLLKDQSIK 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A+VF T+ + K L +H A+ G Q R AL + RV +ATD+AA Sbjct: 246 TALVFTRTKHGADKVVKFLLKHDITAEAIHGNKGQNARQRALNNFKKQSTRVLVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ L VI+ ++S+ E +HR GRTGRAG +G ++ Sbjct: 306 RGIDVDALAYVINFDMSNMAETYVHRIGRTGRAGAEGTAI 345 >gi|50955710|ref|YP_062998.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952192|gb|AAT89893.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 399 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 205/382 (53%), Gaps = 17/382 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70 AL+E G +Q A + +DVL +TGSGKT+AFG + L+ AE+ + Sbjct: 18 ALAELGAETPFPIQAATAPEIVAGRDVLGRGRTGSGKTIAFGAPMVERLMRLWAESGKSG 77 Query: 71 ----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 AP AL +APTRELA+Q+ R ++ + G+ GGV R+ LQ G Sbjct: 78 GKRQTGRAPRALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQGRQVGALQRGVD 137 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+GTPGR+ D + L++S + VLDEAD M D+GF + ++ IL + + L+FS Sbjct: 138 IVIGTPGRIEDLVEQGRLDLSQVVISVLDEADHMCDIGFLEPVQRILRETVDGGQKLLFS 197 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + L + D +A E++ S ID+R VLV AI+ L K Sbjct: 198 ATLDSGVAQLVDEFLVDPSVHEVAGEDQDSSAIDHR-VLVVEHREKGAIIEQLADRDGKT 256 Query: 247 AIVFCSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++F TRA F ++LA++L V+L G+L+Q R+ L + GR V +ATD Sbjct: 257 -LIFARTRA----FAEMLADNLEDAGIPAVSLHGDLNQSRRTRNLAQLTSGRVSVLVATD 311 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGI + D++LVI A+ + LHRSGRTGRAG++G V +IP+ QRR L + Sbjct: 312 VAARGIHVDDIDLVIQADAPDEYKTYLHRSGRTGRAGKRGTVVTLIPRQRQRRMGELLQR 371 Query: 363 ANVSVVWEPAPSVEAIRERDAQ 384 A + + PA + I AQ Sbjct: 372 AEIEADFVPAAPGDGILSAIAQ 393 >gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6] gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O] gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6] gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O] Length = 418 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 183/335 (54%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + + LS+ G+ T +Q+ + L+ +DVL +AQTG+GKT A+GL L L ++ + Sbjct: 14 LSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLPLIQMLSRQSREET 73 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL +APTRELA QV L+ T + + GG S+ ++ L G I++ Sbjct: 74 APKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQEQLAKGVDILIA 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ K +++ L+ +VLDEAD MLD+GF DI+ I+ P++R+ L+FSAT Sbjct: 134 TPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEERQTLLFSATFE 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + LA K+ V V +A+ N + V + + ++ + +VF Sbjct: 194 TRVKALAYRLMKEPVEVQVAAANSTADTVKQMVYPVDKKRKSELLAYLIGSRNWQQVLVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ L + +++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 254 TKTKQGSDALVSELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGLDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LE V++ ++ E+ +HR GRTGRAG+ G++V Sbjct: 314 AQLEQVVNFDMPYKAEDYVHRIGRTGRAGQTGLAV 348 >gi|289550302|ref|YP_003471206.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01] gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus lugdunensis M23590] gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01] gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus lugdunensis M23590] Length = 504 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L +D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QTLENMGFKEPTPIQKDSIPYALEGRDILGQAQTGTGKTGAFGIPLIEKVVNK------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S +L +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 68 SGVQSLILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K V + ID +V ++ + N L H + AIVF Sbjct: 188 AIQALVQQFMKTPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|161503259|ref|YP_001570371.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864606|gb|ABX21229.1| hypothetical protein SARI_01328 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 457 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 12/363 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E GY+ +T VQ A L L DV V A+TGSGKT AFGL L + + F Sbjct: 18 LNELGYLEMTPVQAASLPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVSLFQTQ-- 73 Query: 75 PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TP Sbjct: 74 --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGVQRDSLQHAPHIIVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT Sbjct: 131 GRLLDHLQKRTVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPET 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++ Q+ + ++I + + + I+ + + ++ + + +L H + +VFC+ Sbjct: 191 IAAISGRVQQQPMHIDIDTVDALPA-IEQQFFETSAQEKISLLQTLLSQHQPASCVVFCN 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L +AL G+L Q++R L +G AR+ +ATDVAARG+D+ Sbjct: 250 TKKDCQAVCDALNAAGQSALALHGDLEQRDRDQTLVRFTNGSARILVATDVAARGLDIKS 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371 LELV++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA L + + W Sbjct: 310 LELVVNYELAWDPEAHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368 Query: 372 APS 374 AP+ Sbjct: 369 APA 371 >gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002] Length = 438 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 189/345 (54%), Gaps = 21/345 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL GY T VQ A + L D+LVSAQTGSGKT AF L L + Sbjct: 12 ITSALDAAGYTTPTPVQAASIPAALAGHDLLVSAQTGSGKTAAFLLPSLQKLTERST--G 69 Query: 71 PASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQ 122 P L + PTRELA QV G +L WL VC +GG S + R + Sbjct: 70 SGQGPRILVLTPTRELAQQVEKNATEYGSQLRWLRT-------VCLVGGASFGYQIRAMA 122 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 I+V TPGRL DH+R ++ S L+ ++LDEAD MLD+GF +DIE I+ ++P R+ Sbjct: 123 RPVDIMVATPGRLMDHMRSGRIDFSRLEMLILDEADRMLDMGFIEDIETIVKATPDSRQT 182 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILR 240 ++FSAT+ + LA+ +D R+ IA E + ++ +L A +R + + +IL+ Sbjct: 183 VLFSATLDGTVGKLAQKLTRDPQRIEIAREETGGNIEEH--LLYADDNRHKERLLDHILK 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G A++F +T+ L++ + L G++ Q R+ L +R GR R+ +A Sbjct: 241 EAGFDQAVIFTATKIGSEELADKLSDQGYAAACLHGDMPQNWRNRTLNDLRRGRVRILVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARGID+P + V++ +L E+ +HR GRTGRAGR G+++ Sbjct: 301 TDVAARGIDVPTITHVVNYDLPKQAEDYVHRIGRTGRAGRDGVAI 345 >gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 494 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 191/355 (53%), Gaps = 5/355 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++++GY + +Q + L KDV+ +AQTG+GKT F L L LL+ R + Sbjct: 12 ILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLSRGKR-A 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PA AL + PTRELA QV +E + AV GGV + + L G I+V Sbjct: 70 PAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKLGKGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ L+ +VLDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 130 TPGRLLDLYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKKILKILPAKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N ++ V + A++++++ + K +VF Sbjct: 190 DDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQKQKTAALIHLVKQNEWKQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L A+ G SQ R+ AL + G RV +ATD+AARGID+ Sbjct: 250 SRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVLVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362 L V++ +L + PE+ +HR GRTGRAG G +V ++ + R ERL ++ Sbjct: 310 DQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRDIERLIKQ 364 >gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264] gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 521 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 184/339 (54%), Gaps = 6/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + GY T +Q + L +DVL AQTG+GKT AF L L L R A Sbjct: 15 QAVIDTGYTTATPIQAQAIPVALAGRDVLGIAQTGTGKTAAFTLPLIERLSKGRAR---A 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL +APTRELA QV E T + + IGGVS+ + L G +++ TP Sbjct: 72 RMPRALVLAPTRELADQVAMSFEKYAKGTKLSWVLLIGGVSMGDQVAALNKGVDVLIATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + ++ ++ +V+DEAD MLD+GF DIE I +P KR+ L FSAT+ P Sbjct: 132 GRLLDLFERGKMMLNGVELMVVDEADRMLDMGFIPDIERIFKLTPPKRQTLFFSATMPPE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249 IT L + + KD R+ + I V + SD + A+ ++ +N IV Sbjct: 192 ITRLTQAFLKDPTRIEASRPAMTAETITQYLVRIPSSDPKAKRAALRELMARADVRNGIV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+ ++ V K L +H F + G+L Q R+ L R G ++ +A+DVAARG+D Sbjct: 252 FCNRKSEVDVVAKSLKQHGFDAAPIHGDLDQSLRTKTLADFRSGALKILVASDVAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +PD+ V + ++S + ++ +HR GRTGRAG+ G + ++ Sbjct: 312 IPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIV 350 >gi|325123630|gb|ADY83153.1| ATP-dependent RNA helicase [Acinetobacter calcoaceticus PHEA-2] Length = 620 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/345 (36%), Positives = 195/345 (56%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 12 ETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQETF 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 72 VPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA ++V TPGRL D + + L + ++A+++DEAD MLDLGF +D+E I D + +R+ Sbjct: 132 K-GAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAISDLAGNRRQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ + R+ I + + ++DI + + + L Sbjct: 191 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355 >gi|254487619|ref|ZP_05100824.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101] gi|214044488|gb|EEB85126.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101] Length = 437 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 116/355 (32%), Positives = 199/355 (56%), Gaps = 4/355 (1%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE +P+ + +AL+ G + T +Q+ + + +DV+ AQTG+GKT AFG+ L Sbjct: 1 MSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + +L R P + L +APTRELA Q+ L+ T + + +GG S++ + Sbjct: 61 VAQMLEMEARPEPRTV-RGLVLAPTRELANQIMENLKGFCEGTQLKAMMVVGGQSINPQI 119 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ G ++V TPGRL D + + + + +VLDEAD+MLD+GF D+ I PK Sbjct: 120 KRLERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIASVLPK 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT+ + +A +Y +R+ ++ + + +A +++ ++ + Sbjct: 180 ERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAKAEKKALLIEL 239 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L H + A+VF T+ + K L + F+ ++ G SQ +R A++ + G V Sbjct: 240 LAKHTEERALVFGRTKHGCEKLMKDLVKSGFKAASIHGNKSQGQRDRAIESFKKGDITVL 299 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++ F P M Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 354 >gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429] gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429] Length = 521 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 186/336 (55%), Gaps = 7/336 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY T +QE + ++ DV+ AQTG+GKT AFGL + + +N + Sbjct: 15 AVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQ--- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL I+PTRELA+Q EL L + V V GG + R+ L+ I+VGTPG Sbjct: 72 ---ALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKEHPQILVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ ++ +K +V+DEADEML++GF +DIE I+ +P R+ L+FSAT+ I Sbjct: 129 RLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + KD V+IAS+ +D V ++ +A+ + + AIVF T Sbjct: 189 KKIGVKFMKDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPELAIVFGRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V TK L ++ + G+L Q R L+ + G + +ATDVAARG+D+ + Sbjct: 249 KRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348 V + ++ +PE+ +HR GRTGRAG G+SV FV+ Sbjct: 309 THVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVV 344 >gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus HTCC2654] gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium HTCC2654] Length = 474 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/349 (35%), Positives = 183/349 (52%), Gaps = 13/349 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + P L +DVL AQTG+GKT +F L + + L Sbjct: 11 PKVL-KAVEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITMLARGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDQLIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY------ 241 T++ I + + + RV +A + +I S RD A R Sbjct: 187 TMASEIERITNTFLSNPARVEVARQATTGENIAQEVCKFKASRRDRAATEKRRLLRALID 246 Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 NAI+FC+ + V K L ++ + + G+L Q +R LQ RDG R Sbjct: 247 REGEACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSKRMETLQGFRDGTLRFL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +A+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGRKG +V + Sbjct: 307 VASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRKGKAVMI 355 >gi|159903626|ref|YP_001550970.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211] gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211] Length = 604 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 188/339 (55%), Gaps = 8/339 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L +GY + T +Q+A + +D+L AQTG+GKT AF L + + + Sbjct: 66 TLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALPILERIKQD------TR 119 Query: 74 APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELA+QV + + V V GG + L+ G IVVGTP Sbjct: 120 APQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQINALRRGVQIVVGTP 179 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHIR + L+ +VLDEADEML +GF DDIE+IL+ P KR+M+ FSAT+ Sbjct: 180 GRVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQLPAKRQMIFFSATMPSE 239 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L+K Y + + I ++ ++ I R +++ S + A+ +L + I+F Sbjct: 240 IRRLSKQYLHEPAEITIKAQKKEAQLIRQRYIVIQNSFKLEALKRVLETTADEGVIIFAR 299 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+A R ++ L V L+G++ Q R ++ +R G + +ATDVAARG+D+ Sbjct: 300 TKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDILVATDVAARGLDVER 359 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + LVI+ ++ + E +HR GRTGRAGR G ++ FV P+ Sbjct: 360 IGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVSPR 398 >gi|215482158|ref|YP_002324340.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD) [Acinetobacter baumannii AB307-0294] gi|332868649|ref|ZP_08438296.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113] gi|213986281|gb|ACJ56580.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD) [Acinetobacter baumannii AB307-0294] gi|332733221|gb|EGJ64416.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113] Length = 586 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 196/348 (56%), Gaps = 9/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALA 59 ++ + + +AL G+ N T VQE + L KD+LVS+QTGSGKT AF LA Sbjct: 9 SLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQ 68 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118 T + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ Sbjct: 69 DTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQI 128 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ GA +VV TPGRL D + + L + + A+++DEAD MLDLGF +D+E I D + Sbjct: 129 QQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAAN 187 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237 + + LMFSAT + I LA+ + R+ I + + ++DI + + + Sbjct: 188 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 247 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ Sbjct: 248 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 307 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 308 LVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355 >gi|163789335|ref|ZP_02183776.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium ALC-1] gi|159875403|gb|EDP69466.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium ALC-1] Length = 411 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 185/330 (56%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GYV T VQ+ + P L +KDV+VSAQTG+GKT AF L + L + D Sbjct: 14 KAIEASGYVEPTLVQQRAIPPILDKKDVIVSAQTGTGKTAAFALPILQQLFDQQDAPKRG 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I+PTRELAVQ+ + + T + V GG S+ + L+ G I+V TP Sbjct: 74 KKIKALIISPTRELAVQIQQNFKTYAQFTNLRSLVIFGGTSIEPQIDVLKKGIDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + +N+ H++ VLDEAD ML +GF DD++ I P+ ++ L+FSATI Sbjct: 134 GRLLDLHKQDYVNLDHIETFVLDEADLMLAMGFIDDVKKIERLCPENKQTLLFSATIPYK 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA KD R+++ D+ V ++ ++++R N ++F Sbjct: 194 IEQLASGILKDPERIDVTPTRSVAKDVSQILYYVPKRNKIELCLHLMRNTIKGNVLIFRR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V++ + L ++ + V ++ G+ +Q +R AL ++G +V IATDVAARGID+ + Sbjct: 254 TKFGVNKLEQTLLKNGYTVDSIHGDKNQSDRQTALNKFKNGYVKVLIATDVAARGIDIDE 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKG 342 L+ V + ++ + E +HR GRTGRAG G Sbjct: 314 LDNVFNFDMPNQAETYVHRIGRTGRAGNIG 343 >gi|239503259|ref|ZP_04662569.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD) [Acinetobacter baumannii AB900] Length = 586 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 196/348 (56%), Gaps = 9/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALA 59 ++ + + +AL G+ N T VQE + L KD+LVS+QTGSGKT AF LA Sbjct: 9 SLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQ 68 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118 T + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ Sbjct: 69 DTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQI 128 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ GA +VV TPGRL D + + L + + A+++DEAD MLDLGF +D+E I D + Sbjct: 129 QQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAAN 187 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237 + + LMFSAT + I LA+ + R+ I + + ++DI + + + Sbjct: 188 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 247 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ Sbjct: 248 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 307 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 308 LVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355 >gi|312172469|emb|CBX80726.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora ATCC BAA-2158] Length = 459 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 201/363 (55%), Gaps = 20/363 (5%) Query: 1 MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 M F + Q+ + L+E GY+ +T VQ L L +DV A+TGSGKT AFGL Sbjct: 1 MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 + + A AL + PTRELA QV +EL L + ++ +C GG V Sbjct: 61 VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLC-GGQPVG 113 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 +R L + HIVVGTPGR+ DH++ + L + + +VLDEAD ML++GFR+DI+ I+ Sbjct: 114 AQRDSLLHAPHIVVGTPGRILDHLQRETLKLDAINTLVLDEADRMLEMGFREDIDAIISH 173 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRD 232 SP+ R+ L+FSAT AI ++++ Q++ + + E SD I+ A ++ Sbjct: 174 SPQTRQTLLFSATWPQAIAQISQSIQRNPLTI----ETGDVSDLPAIEQTFYEAASREKL 229 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 A++ +L + +VFC+T+ L + L G+L Q+ER L + Sbjct: 230 TALIGLLSERQPSSCVVFCNTKRECDDIAYALDKAQISAQPLHGDLEQRERDQMLIRFAN 289 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 G RV +ATDVAARG+D+ L +V++ +LS +PE +HR GRT RAG++G +V FV P Sbjct: 290 GSCRVLVATDVAARGLDIKALAMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDE 349 Query: 352 MQR 354 M R Sbjct: 350 MIR 352 >gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309] gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309] Length = 502 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 191/349 (54%), Gaps = 15/349 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---- 66 I +AL ++G + +Q L P L D++ A+TG+GKT+ FG+ + ++A + Sbjct: 74 IVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGY 133 Query: 67 -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D +P + P AL I PTREL QV ++L + GGV+ + L+ GA Sbjct: 134 EDLLNP-NKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQIEALERGA 192 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGRL D +R L++S ++ VVLDEADEMLDLGF D+E +L P+ R ++F Sbjct: 193 DIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVPENRHTMLF 252 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239 SAT+ + LA+ + + + Q+ ++ YR V ++ + IL Sbjct: 253 SATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYR---VHAMNKVEVVARIL 309 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G ++FC T+ + +R + L F V +L G+L Q R AL+ R+G+ V + Sbjct: 310 QAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNGKVDVLV 369 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ATDVAARGID+ D+ VI+ + + + +HR GRTGRAG G +V + Sbjct: 370 ATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFV 418 >gi|152013480|sp|A5E1W4|DBP3_LODEL RecName: Full=ATP-dependent RNA helicase DBP3 Length = 535 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/320 (38%), Positives = 189/320 (59%), Gaps = 16/320 (5%) Query: 35 LREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93 L KDV+ A+TGSGKT AFG+ A+ + + ++N S L I+PTRELA+Q+ Sbjct: 161 LDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDLS------VLCISPTRELALQIYDN 214 Query: 94 LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153 LE L T V GGVS + + ++NGA++VV TPGRL D I +++S + +V Sbjct: 215 LEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVDLSSINYLV 274 Query: 154 LDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212 LDEAD ML+ GF +DI+ I+ S+P + R+ LMF+AT + LA N+ V+V I Sbjct: 275 LDEADRMLEKGFEEDIKLIIGSTPAQGRQTLMFTATWPKEVRELANNFMNQPVKVTIGDR 334 Query: 213 NRQHSDIDYRAVLVALSD---RDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVL 264 + ++ ++ L D ++ ++N+L +Y N +VF + SR +L Sbjct: 335 DELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLL 394 Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324 + F+V A+ G+LSQQ+R+ ALQ + G + +ATDVAARG+D+P+++ VI+ Sbjct: 395 HRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVINLTFPLT 454 Query: 325 PENLLHRSGRTGRAGRKGMS 344 E+ +HR GRTGRAG+ G++ Sbjct: 455 IEDYVHRLGRTGRAGQTGIA 474 >gi|149204026|ref|ZP_01880994.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035] gi|149142468|gb|EDM30513.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035] Length = 429 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/347 (35%), Positives = 194/347 (55%), Gaps = 2/347 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L+ G T +Q + L DVL AQTG+GKT+AFGL L + L+ Sbjct: 3 LPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPLITALMQAP 62 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + +P + +L +APTRELA Q+ L L + + + + +GG S++ + + L+ G Sbjct: 63 GKPAPKTI-RSLILAPTRELASQIRDALLPLVKDSPIKINLVVGGASINPQIKRLEQGTD 121 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL D I + + + +VLDEAD+MLDLGF + I +R+ ++FS Sbjct: 122 ILVATPGRLLDLIDRRAVRLDAAHFLVLDEADQMLDLGFIHALRRIAGLLAAERQTMLFS 181 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + LA +Y K RV ++ + + VA + + + ++ +L H ++ Sbjct: 182 ATMPKQMEELAGSYLKHPKRVQVSPPGKAADKVTQEVHFVAKAAKPDLLIELLAKHKSEL 241 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VF T+ + K L + + V A+ G SQ +R AL+ RDG ++ +ATDVAAR Sbjct: 242 ALVFGRTKHGSDKLAKRLEQAGYSVAAIHGNKSQGQRERALKSFRDGHVKILVATDVAAR 301 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 G+D+PD++ V + EL + P+N +HR GRT RAGR G ++ F P M Sbjct: 302 GLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGRDGAAIAFCAPDEM 348 >gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10] gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum H10] Length = 542 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/336 (34%), Positives = 191/336 (56%), Gaps = 14/336 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ + G+ T VQ + L +D++V ++TGSGKT FG+++ E Sbjct: 14 ILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSILQLTNPE----- 68 Query: 71 PASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P L + P RELAVQV ++ ++L KT + G +++ E + L G Sbjct: 69 -EAGPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIY----GQHNINLETQILNKGVS 123 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV GTPGR+ DHI L+ +++ +VLDEAD MLD+GF D + I+ + PK+R L+FS Sbjct: 124 IVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITLLFS 183 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I + K Y + V + I S+ + I V ++++ + +L ++ Sbjct: 184 ATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEKPES 243 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++FC+T+A+V R L + + AL G++ Q +R N +Q + G+ + +ATDVAAR Sbjct: 244 CMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATDVAAR 303 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 GI + DL LVI+ ++ ++ +N +HR GRTGRAG +G Sbjct: 304 GIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEG 339 >gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse] gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse] Length = 467 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 192/361 (53%), Gaps = 7/361 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +Q + L+ KDVL AQTG+GKT +F L + + L R A Sbjct: 19 KAVKSAGYTAPTPIQSGTIPYVLQRKDVLGIAQTGTGKTASFVLPMLTLLEKGRAR---A 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV + + VA+ IGGVS + R L+ GA +++ TP Sbjct: 76 RMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLERGADVLIATP 135 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L + ++ +V+DEAD MLD+GF DIE I +P R+ L FSAT++P Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPE 195 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHG--AKNAI 248 IT L K + V V + + + I + V D V ++ G KNAI Sbjct: 196 ITKLTKQFLHFPVTVEVTKASSTATTITQQLVKSGNKSWDKRAVLRELIHNEGDELKNAI 255 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ + +S + L H F V AL G++ Q R + L +D + + +A+DVAARG+ Sbjct: 256 IFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLTLLVASDVAARGL 315 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+P + V + ++ ++ E+ +HR GRTGRA R G + ++ + Q+ + +N + Sbjct: 316 DIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQKYISAIEEMSNEKIE 375 Query: 369 W 369 W Sbjct: 376 W 376 >gi|169632326|ref|YP_001706062.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii SDF] gi|169151118|emb|CAO99784.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii] Length = 619 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ N T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 16 ETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF 75 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 76 VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 135 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + L + + A+++DEAD MLDLGF +D+E I D + + + Sbjct: 136 K-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAVNRGQ 194 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ + R+ I + + ++DI + + + L Sbjct: 195 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 254 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 255 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTARNRRLRSIREGRAKILVA 314 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 315 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 359 >gi|323526518|ref|YP_004228671.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1001] gi|323383520|gb|ADX55611.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001] Length = 536 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 142/396 (35%), Positives = 207/396 (52%), Gaps = 41/396 (10%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------- 63 AL+ GY N T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 61 ALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQKAQASQP 120 Query: 64 --------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108 R P + P L + PTRELA+QV G+ L+ L + Sbjct: 121 REPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 174 Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 +GGV+ ++ L I+V TPGRL DH+ +++S L+ +VLDEAD MLD+GF DD Sbjct: 175 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDMSQLQILVLDEADRMLDMGFIDD 234 Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 I+ I+ ++P R+ ++FSAT+ I +L KD R+ I Q ++I V Sbjct: 235 IDTIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVDD 294 Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 D +D + ++LR G AIVF +T+ + LA+ F+ AL G+L Q R+ + Sbjct: 295 RDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTI 354 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 + +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR G++V + Sbjct: 355 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 414 Query: 348 I---PQNMQRRAERLFR---EANVSVVWEP---APS 374 + Q +R ER R NV +EP APS Sbjct: 415 VHHAEQGALKRIERFVRTPLPVNVVEGFEPRKSAPS 450 >gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus 307] gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus 307] Length = 530 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/364 (33%), Positives = 190/364 (52%), Gaps = 12/364 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E GY T +Q + P L +DVL AQTG+GKT F L + + L R A Sbjct: 15 KAVEETGYTTPTPIQAGAIPPALEGRDVLGIAQTGTGKTAGFTLPMITMLKRGRAR---A 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L +APTRELA QV + T + A+ IGGVS + + G +++ TP Sbjct: 72 RMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDNLIDRGVDVLIATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L +S +K +V+DEAD MLD+GF DIE I +P R+ L FSAT++P Sbjct: 132 GRLLDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFSATMAPE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-------NILRYHGA- 244 I + + + ++ +A I ++ S + + + +I+ GA Sbjct: 192 IERITNTFLSNPAKIEVARAATTSETITQGVIMFKGSKKTSEAIEKQKLLRDIIASEGAN 251 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +N I+FC+ + V K + + + G+L Q R L RDG R +A+DV Sbjct: 252 CRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRTLAKFRDGTLRFLVASDV 311 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P++ V + ++ S+ E+ +HR GRTGRAG+ G ++ + Q+ + + R Sbjct: 312 AARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKTGATIMICTPRDQKNLDDIERLV 371 Query: 364 NVSV 367 ++V Sbjct: 372 EMAV 375 >gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555] gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016] gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555] gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 524 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 189/338 (55%), Gaps = 8/338 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V EA+ G+ + +Q + L D++ AQTG+GKT+AFG + S + +N Sbjct: 13 PKVF-EAIDNMGFEEPSQIQAESIPVILEGNDIIGQAQTGTGKTLAFGAPMLSKITPKNK 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 S AL + PTRELA+QV EL + +++ GG + R+ + L+ G +I Sbjct: 72 HIS------ALILTPTRELAIQVNDELSRIAKFMKILLLPIYGGQPIERQIKSLKRGINI 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DH+ K L++S+++ + +DEADEMLD+GF +DIE I+ +S R+ L+FSA Sbjct: 126 VVGTPGRILDHLHRKTLDLSNIEFLTIDEADEMLDMGFIEDIEEIIKASNPNRQTLLFSA 185 Query: 188 TISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 T+ + LA Y + + IA + DR ++ IL + Sbjct: 186 TMPDQVKRLASKYMSSNTKYITIAKNTLTVEKTKQYYYEIKHKDRFESLCRILDVDEPSS 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+FC T+ V + + + V + G++ Q +R N L+ ++G +ATDVAAR Sbjct: 246 AIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 GID+ ++ VI+ +L + E+ +HR GRTGRA ++G++ Sbjct: 306 GIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIA 343 >gi|284929206|ref|YP_003421728.1| superfamily I DNA/RNA helicaseI [cyanobacterium UCYN-A] gi|284809650|gb|ADB95347.1| DNA/RNA helicase, superfamily II [cyanobacterium UCYN-A] Length = 477 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 152/454 (33%), Positives = 231/454 (50%), Gaps = 23/454 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E G+ N T +QE + L DVL +QTG+GKT A+ L + L + D P+ Sbjct: 18 LKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLPI----LEKVDIQDPSVQ 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 L + PTRELA QV L+ + + + GG S+ R+ R L+ G IVVGTPGR Sbjct: 74 --VLILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQIRSLERGVQIVVGTPGR 131 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + D I K L + L+ VLDEADEML +GF DD++ IL +P+ R FSAT+ I Sbjct: 132 VIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRSTACFSATMPREIR 191 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCST 253 L + K V +++ + I+ +V + A+ +L ++AI+F T Sbjct: 192 ELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQPVLEIEDPESAIIFVRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + S T L E V G LSQ +R + RDGR ++ +ATD+AARG+D+ L Sbjct: 252 KQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVATDIAARGLDVEGL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSVVWE 370 VI+ +L N E +HR GRTGRAG+ G ++ ++ + M R+ ER R+ + + Sbjct: 312 SHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIERKLRQ-KIDICKI 370 Query: 371 PAPS-VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429 P S VEA R Q ++++ L + + +V L ++D + IAA L++ C Sbjct: 371 PNRSEVEAKRLGKLQNLIKESLIGERM-ASFLPLVSELSTEYDSQAIAAAALQMIYDQDC 429 Query: 430 ---------APEEITPVSLVSGRDRFRDDSRAFK 454 PE TP ++ GR + +S+ K Sbjct: 430 PDWMKTDWEVPEAATPKPVI-GRKSNKYNSKNSK 462 >gi|228921162|ref|ZP_04084492.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838478|gb|EEM83789.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 458 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 196/355 (55%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ PAS+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPASSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ VS+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|115454875|ref|NP_001051038.1| Os03g0708600 [Oryza sativa Japonica Group] gi|75320262|sp|Q53RK8|RH21_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 21 gi|62733557|gb|AAX95674.1| DEAD/DEAH box helicase, putative [Oryza sativa Japonica Group] gi|108710689|gb|ABF98484.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa Japonica Group] gi|108710690|gb|ABF98485.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa Japonica Group] gi|108710691|gb|ABF98486.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa Japonica Group] gi|113549509|dbj|BAF12952.1| Os03g0708600 [Oryza sativa Japonica Group] gi|125545447|gb|EAY91586.1| hypothetical protein OsI_13221 [Oryza sativa Indica Group] gi|125587655|gb|EAZ28319.1| hypothetical protein OsJ_12293 [Oryza sativa Japonica Group] gi|215697317|dbj|BAG91311.1| unnamed protein product [Oryza sativa Japonica Group] Length = 736 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 193/358 (53%), Gaps = 20/358 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71 A+ + GY + +Q A + L+++DV+ A+TGSGKT AF L + S T L + Sbjct: 329 AVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENE 388 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G +V+ T Sbjct: 389 AEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIAT 448 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179 PGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 449 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 508 Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 R MFSAT+ PA+ LA+ Y ++ V V I + + I ++ S++ + Sbjct: 509 AKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMTKESEKMSR 568 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + IL G K AIVFC+T+ S K L + F+V L G SQ++R +L R+ R Sbjct: 569 LQKILTDLGDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGKSQEQRETSLDGFRNRR 628 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 V +ATDVA RGID+PD+ VI+ E+ S+ + HR GRTGRAG+KG++ F+ +N Sbjct: 629 FTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLEN 686 >gi|126663594|ref|ZP_01734591.1| putative RNA helicase dead-box protein [Flavobacteria bacterium BAL38] gi|126624542|gb|EAZ95233.1| putative RNA helicase dead-box protein [Flavobacteria bacterium BAL38] Length = 642 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/352 (34%), Positives = 198/352 (56%), Gaps = 12/352 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 A+ + G+ N + VQE + P L E+ D++ AQTG+GKT AFG L + AEN Sbjct: 16 AIKDLGFENPSEVQEKAI-PVLLEQNTDLVALAQTGTGKTAAFGFPLIQKIDAEN----- 69 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL ++PTREL +Q+ E++ LY+K G+ GG S+ + R+++ GA I+V Sbjct: 70 -RNTQALILSPTRELCLQITNEIK-LYSKYIKGLHTVAVYGGASITEQAREVKRGAQIIV 127 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGR+ D I +NI ++ +LDEADEML++GF +DI IL +P ++ +FSAT+ Sbjct: 128 ATPGRMQDMINRGLVNIKNIDFCILDEADEMLNMGFYEDICSILSDTPDEKNTWLFSATM 187 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + +AK + V + + S+N + + + V DR A+ + + ++V Sbjct: 188 PAEVARIAKQFMSSPVEITVGSKNSGSATVSHEYYCVNARDRYEALKRLADANPDIFSVV 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ + L E + AL G+LSQ +R ++ R + ++ +ATDVAARGID Sbjct: 248 FCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDVAARGID 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 + ++ V++ +L E HRSGRTGRAG+ G S+ +I ++ R+ + R Sbjct: 308 VDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIITKSELRKISSIER 359 >gi|153939895|ref|YP_001390000.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str. Langeland] gi|152935791|gb|ABS41289.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str. Langeland] gi|295318086|gb|ADF98463.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str. 230613] Length = 425 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 194/346 (56%), Gaps = 4/346 (1%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I +AL E GY T +QE + L KD++ AQTG+GKT AF + + Sbjct: 2 LFENLEIIKPIQKALKEEGYKKTTPIQERSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L +++ + + P+ AL +APTRELA+Q+ E + AV GGVS + + + Sbjct: 62 NL-SKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G I++ TPGR+ D K +++ +++ VLDEAD MLD+G D++ I+ PK Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ IT L + KD +RV + + I V + + ++L Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLL 240 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++A+VF +T+ + K L E + A+ G SQ R AL ++G+ RV + Sbjct: 241 KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLV 300 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATD+AARGID+ +L V + L PE +HR GRTGRAG KG+++ Sbjct: 301 ATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346 >gi|319796562|ref|YP_004158202.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS] gi|315599025|gb|ADU40091.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS] Length = 483 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/336 (39%), Positives = 198/336 (58%), Gaps = 9/336 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQ++ L++ GY +T++Q A L P L KD++ A+TGSGKT AF LAL + L A Sbjct: 28 PQMLAN-LTQLGYTQMTAIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLANLNAR-- 84 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF A A+ + PTRELA QV E+ L A+ + V GGV++ + L++GAH Sbjct: 85 RF----AIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQIASLEHGAH 140 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVVGTPGR+ DH+ L++S L +VLDEAD MLD+GF +DI + PK+R+ L+FS Sbjct: 141 IVVGTPGRIMDHLERGNLDLSALNTLVLDEADRMLDMGFFEDIVKVARQCPKERQTLLFS 200 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I LA+ + K ++ + +++ + S I R V S+R + + +L + + Sbjct: 201 ATYPEGIAKLAQQFMKSPQQITVQAQH-EGSKIRQRWYQVKDSERLHTVSLLLDHFRPVS 259 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 + FC+T+ +VL F +AL GEL Q+ER L + V +ATDVAAR Sbjct: 260 TLAFCNTKQQCRDLVEVLQAQGFSALALFGELEQRERDQVLVQFANRSCSVLVATDVAAR 319 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 G+D+ LE VI+ +++ + E +HR GRTGR G+ G Sbjct: 320 GLDISHLEAVINVDVTPDSEIHIHRVGRTGRVGQSG 355 >gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda melanoleuca] Length = 739 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 206/361 (57%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 141 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 258 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 259 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 318 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT P + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 319 EDNPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 378 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 379 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 436 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 437 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 496 Query: 350 Q 350 + Sbjct: 497 R 497 >gi|303283774|ref|XP_003061178.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457529|gb|EEH54828.1| predicted protein [Micromonas pusilla CCMP1545] Length = 456 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/381 (33%), Positives = 209/381 (54%), Gaps = 11/381 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + A ++ G+ + + +Q A + L+ KDV+ AQTGSGKT AF L + LL + F Sbjct: 26 LATAAADLGWKDPSEIQRASIPQALQGKDVIGLAQTGSGKTGAFALPILQELLDKPQAF- 84 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL ++PTRELA+Q+ + E L A GV AV +GGV + + L H+VVG Sbjct: 85 -----FALVLSPTRELAIQISEQFEALGAGIGVKCAVLVGGVDMMAQSIQLGKRPHVVVG 139 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGR+ DH+ KG + L+ + LDEAD +L+L F +I+ IL P+ RR +FSAT+ Sbjct: 140 TPGRVVDHLTNTKGFGLKQLQVLCLDEADRLLNLDFEQEIDQILKVIPRDRRTQLFSATM 199 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + + L + ++ V+V ++++ + + + + V +D + A +V Sbjct: 200 TSKVAKLQRACLRNPVKVEVSAKYSTVASLKQQYLFVPAKHKDCYACYLFNELSASTMMV 259 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T + V F + + G++SQ +R AL + G V +ATDVA+RG+D Sbjct: 260 FTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRLGALNKFKAGERNVLVATDVASRGLD 319 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 +P +++VI+ ++ N ++ +HR GRT RAGR G+++ ++ Q +++ R N + Sbjct: 320 IPAVDVVINFDVPQNSKDYVHRVGRTARAGRSGLAITLVTQYDVELYQKIERLINKKLDA 379 Query: 370 EPAP--SVEAIRER--DAQRI 386 PAP +V + ER +AQRI Sbjct: 380 YPAPEEAVLLMHERVNEAQRI 400 >gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus Py2] Length = 559 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/332 (36%), Positives = 185/332 (55%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E +V T +Q + L +D++ AQTG+GKT AF L + L+ R P S Sbjct: 51 ALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPILDRLVRHPHRPEPKS 110 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL ++PTREL+ Q+ E + V++ IGGV + R+ R L G ++V TPG Sbjct: 111 V-RALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQIRALSRGVDVLVATPG 169 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + + ++ +VLDEAD+MLD+GF I I+ P KR L FSAT+ AI Sbjct: 170 RLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHSLFFSATMPHAI 229 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + +D VRV + + ++ R +LV +++ + +L A+VF T Sbjct: 230 AELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANKGQLLAEVLSTEDIDRALVFSRT 289 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + +VLA+ A+ G SQ +R L R+G+ R IATD+AARGID+ + Sbjct: 290 KHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTLIATDIAARGIDVTGV 349 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VI+ +L + PE+ +HR GRT RAGR+G+++ Sbjct: 350 SHVINFDLPNVPESYVHRIGRTARAGREGIAI 381 >gi|229133365|ref|ZP_04262193.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196] gi|228650038|gb|EEL06045.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196] Length = 450 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 196/355 (55%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KDV+ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDVIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y ++ + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ VS+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|168212498|ref|ZP_02638123.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str. F4969] gi|170715966|gb|EDT28148.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str. F4969] Length = 478 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/374 (33%), Positives = 203/374 (54%), Gaps = 6/374 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +AL+ GY N + VQEA + L+ +D++V +QTGSGKT +FG+ L + E Sbjct: 7 NLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPLCEKINIE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L + PTRELA+QV EL + V A G + + R+L+ Sbjct: 67 EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELKQRV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L++S + VV+DEAD+ML +GF D I+ IL + +F Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I + + Y ++ + + + S+ I+ A+ + ++ A+ L + + Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCLYAYHPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AIVFC+TR V K+L + L G++ Q++R ++ RD +V + TD+AA Sbjct: 241 SAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + +ELVI+ E+ E+ +HR GRTGRAGR+G ++ + ++ E + Sbjct: 301 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 360 Query: 366 SVVWEPAPSVEAIR 379 + PS E ++ Sbjct: 361 EIRKASLPSDEEVK 374 >gi|18309844|ref|NP_561778.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens str. 13] gi|18144522|dbj|BAB80568.1| probable ATP-dependent RNA helicase [Clostridium perfringens str. 13] Length = 478 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 204/374 (54%), Gaps = 6/374 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +AL+ GY N + VQEA + L+ +D++V +QTGSGKT +FG+ + + E Sbjct: 7 NLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCEKINIE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L + PTRELA+QV EL + V A G + + R+L+ Sbjct: 67 EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELKQRV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L++S + VV+DEAD+ML +GF D I+ IL + +F Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I + + Y ++ + + + S+ I+ A+ + +++ A+ L + + Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKEKALWKCLYAYHPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AIVFC+TR V K+L + L G++ Q++R ++ RD +V + TD+AA Sbjct: 241 SAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + +ELVI+ E+ E+ +HR GRTGRAGR+G ++ + ++ E + Sbjct: 301 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 360 Query: 366 SVVWEPAPSVEAIR 379 + PS E ++ Sbjct: 361 EIKKVSLPSDEEVK 374 >gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266] Length = 395 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 119/344 (34%), Positives = 198/344 (57%), Gaps = 12/344 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L++ G T +Q+ + + +DV+ AQTG+GKT AF L + +N R A Sbjct: 16 DKLTQEGIGAPTPIQQEAIPALMDGRDVIAQAQTGTGKTFAFLLPIL-----QNIRVDEA 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S A+ + PTRELA+Q+ E+ L + V+AV GG V ++ L AHIV+ TP Sbjct: 71 SVQ-AVIVTPTRELALQITEEVRKLKTEDMHVLAVY-GGQDVAKQAHKLDGQAHIVIATP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R +++ +K +VLDEAD+ML+ GF D++ IL +P+ ++ ++FSATI+ Sbjct: 129 GRMLDHLRRGTISLEAVKYMVLDEADQMLEAGFLPDVKDILSQTPEAKQTMLFSATITTQ 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVF 250 + L K KD R+ + + I + ++ +DR + ++ I++ H A++F Sbjct: 189 VNQLGKKILKDPRRITVQEKTVTLEGI--KQLVYETTDRAKQDTLIEIMQEHRPFLALIF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ + L H F+ L G+LSQ +R ++ RD + + +ATDVAARG+D+ Sbjct: 247 CRTKRRARKLNDALLSHGFEADELHGDLSQAKREKVMKRFRDAKIQYLVATDVAARGLDV 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + V + ++ +PE+ +HR GRTGRAG KG+++ F P++ Q Sbjct: 307 EGVTHVFNYDIPQDPESYIHRIGRTGRAGGKGLAITFAAPKDRQ 350 >gi|71082870|ref|YP_265589.1| ATP-dependent RNA helicase [Candidatus Pelagibacter ubique HTCC1062] gi|71061983|gb|AAZ20986.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique HTCC1062] Length = 582 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/372 (34%), Positives = 207/372 (55%), Gaps = 19/372 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + +L + + T +Q + L KD+L +AQTG+GKT+AF + L + L+ + Sbjct: 9 IEDSLKNSLEKMKFTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPLINKLILDK 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125 + F AL + PTRELA QV ++ + + K + A+ IGG ++ ++ R L N + Sbjct: 69 NAF-------ALVMCPTRELATQVMAAIKSIISDKINIKTALLIGGEAMQKQLRQLGNRS 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH++ K LN+S K +VLDE D MLD+GF IE IL PK + L+F Sbjct: 122 RIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVPKDHQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +++ Y + R++ S + + I + V ++ + +V+ ++ K Sbjct: 182 SATLPQNIVRISERYLNEPQRISTGSTSVPIAKIKQETLQVFKENKYDQLVD--QFIARK 239 Query: 246 NAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +I VF T+ + K L E A+ G+L Q +R + R G R+ IATDVA Sbjct: 240 GSILVFVKTKRGADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRILIATDVA 299 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFR 361 ARG+D+P ++ VI+ +L PE+ +HR GRT RAG +G ++ F+ P ++M +L Sbjct: 300 ARGLDIPLIQHVINFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWNEISKL-- 357 Query: 362 EANVSVVWEPAP 373 + ++PAP Sbjct: 358 ---IDPNFKPAP 366 >gi|32267267|ref|NP_861299.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449] gi|32263320|gb|AAP78365.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449] Length = 530 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 189/336 (56%), Gaps = 13/336 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + + E G+ + VQ + L+ KD++ AQTG+GKT AF + + +TL D Sbjct: 58 KGIREAGFSTPSPVQSQSIPIILQGKDLIAQAQTGTGKTAAFAIPILNTLNRNKD----- 112 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 AL I PTRELA+Q+ E+ L + G + +C+ GG S+ R+ L+ ++ T Sbjct: 113 --IEALIITPTRELAMQISEEILKL-GRFGRIKTICMYGGQSIKRQCDLLEKKPKAMIAT 169 Query: 132 PGRLCDHIRGKGLNISHL--KAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 PGRL DH++ I+H + VVLDE+DEMLD+GF DDIE I P R+ L+FSAT+ Sbjct: 170 PGRLLDHLQNG--RIAHFSPQIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLLFSATM 227 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LA + V I + + DI+ + ++ +RD AIV ++ +I+ Sbjct: 228 PEPIKALAMKILNEPAFVKITPTDVTNQDIEQQYYIINEGERDEAIVRLIETQNPTKSII 287 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F + LA F+ +AL G++ Q++R A++ R+ + + +ATDVA+RG+D Sbjct: 288 FTRMKKEADALAIRLANRGFKAIALHGDMEQRDRREAIKAFRENKIEILVATDVASRGLD 347 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + D+ V + + NPE+ +HR GRTGRAG+KG++V Sbjct: 348 ISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAV 383 >gi|212636923|ref|YP_002313448.1| DEAD box family ATP-dependent RNA helicase [Shewanella piezotolerans WP3] gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella piezotolerans WP3] Length = 432 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 200/354 (56%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+SE GY +T +Q+ + R +DVL SAQTG+GKT AF L + +L Sbjct: 6 FSFAPEIL-RAISECGYQKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFSLPILQKML 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +N + S AL + PTRELA Q+ + V V +GGV + + L+ Sbjct: 65 -DNPSATQRSNARALILTPTRELAAQIADNINDYAKYLEVNVVTIVGGVKMDSQATKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA I++ TPGRL +HI L++S++ +VLDEAD MLD+GF DI+ IL + KR+ L Sbjct: 124 GADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNSKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT S + LA V+ N+ + ++Q++ D + ++ ++ + G Sbjct: 184 MFSATFSAPVKKLASEMM---VKPNVITADKQNTTADTVSQVIYPVEQRRKRELLSELIG 240 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KN +VF +TR + + K L + GE +Q R AL+ ++G+ RV +A Sbjct: 241 KKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+ DLE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354 >gi|145352866|ref|XP_001420755.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580990|gb|ABO99048.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 466 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 210/374 (56%), Gaps = 13/374 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q A + LRE+DV+ AQTGSGKT AF L + +LL F +L Sbjct: 37 GWRAPTPIQCAAVPEALRERDVIGLAQTGSGKTGAFALPILQSLLDAPQGFH------SL 90 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA+Q+ ++E L A G A +GGV + + L H++VGTPGR+ DH Sbjct: 91 ILSPTRELAMQIAEQIETLGAGVGARTATLVGGVDMTTQAIKLGKRPHVIVGTPGRVVDH 150 Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 + KG ++ LK +VLDEAD +L+L F ++I+ IL P RR +FSAT++ + L Sbjct: 151 LENTKGFSLRALKVLVLDEADRLLNLDFEEEIDKILRVIPSDRRTQLFSATMTNKVAKLQ 210 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + +D V+V ++++ + + + +D + A IVF T Sbjct: 211 RACLRDPVKVEVSAKYSTVESLKQHYLFIPAKHKDCYATYLFNELSASTLIVFART-CDA 269 Query: 258 SRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 +R ++A +L F V + G++SQ +R ALQ + G + IATDVA+RG+D+P +++V Sbjct: 270 TRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKSGERNILIATDVASRGLDIPSVDVV 329 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-REANVSVVWEPA 372 I+ ++ N ++ +HR GRT RAGR G++V ++ Q + ++ ERL ++ + + E A Sbjct: 330 INYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQKIERLINKKLDKYPLEEEA 389 Query: 373 PSVEAIRERDAQRI 386 + R +AQRI Sbjct: 390 VMLLYDRVNEAQRI 403 >gi|330447635|ref|ZP_08311283.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491826|dbj|GAA05780.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 461 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 189/332 (56%), Gaps = 7/332 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q L L KDV+ +TGSGKT AFGL L L + R Sbjct: 19 LTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQNLRVKRFRVQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L A + V GG+ + L++GAHI+VGTPG Sbjct: 75 --TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +HIR L + L +VLDEAD ML++GF+D ++ I++ +P+ R+ L+FSAT I Sbjct: 133 RVEEHIRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIEGAPRDRQTLLFSATYPDQI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++AK ++ V+V + S + S + + +R A+ +L H ++ +VFC+T Sbjct: 193 ASIAKRIMRNPVQVKVESNHDNSSISQHFYKVDNNEERMRAVRLLLSQHRPESCVVFCNT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L + F +AL G+L Q+ER L + + + +ATDVAARG+D+ +L Sbjct: 253 KREAQEISDDLEAYGFSAIALHGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ L+ + E +HR GRTGRAG KG++ Sbjct: 313 DAVINYHLARDTEVHVHRIGRTGRAGSKGIAC 344 >gi|149199772|ref|ZP_01876803.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155] gi|149137177|gb|EDM25599.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155] Length = 437 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 201/377 (53%), Gaps = 15/377 (3%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +GY T +QE + L+ D+L AQTG+GKT AF L + L ++R P A Sbjct: 19 QGYTQPTPIQEQAIPIILKGGDILAGAQTGTGKTAAFTLPILHLLSTADNRG--GHRPRA 76 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L + PTRELA QVG +E + V GGV ++ +++ L+ G IVVGTPGRL D Sbjct: 77 LVLTPTRELAAQVGESVELYGKGLDIRSTVIFGGVGINPQKQKLRKGVDIVVGTPGRLLD 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 K L++S ++ ++LDEAD MLD+GF DI+ I+ P+KR+ L FSAT S I L+ Sbjct: 137 LAGQKALDLSRIEYLILDEADRMLDMGFIHDIKKIIKLVPEKRQTLFFSATYSKDIKALS 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 ++ ++ V +A +N +D V + + N + +++R +VF T+ Sbjct: 197 ESILRNPSLVEVARQNTSAETVDQSVYHVGKNKKRNLLSSLIRDGEWNQVLVFTRTKHGA 256 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 ++ T +L A+ G SQ R+ AL + + RV +ATD+AARGID+ L V+ Sbjct: 257 NKLTNMLIADGITAAAIHGNKSQNARTRALADFKAIKVRVLVATDIAARGIDIDRLPHVV 316 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF-------REANVSV--- 367 + EL E+ +HR GRTGRAG G ++ ++ + A LF ++ NV Sbjct: 317 NYELPEIAEDYVHRIGRTGRAGCSGEAISLV---AKEEASLLFAIEKLINKKVNVKEIPG 373 Query: 368 VWEPAPSVEAIRERDAQ 384 + E APS RE + + Sbjct: 374 ITEKAPSQSQAREAEKE 390 >gi|126643119|ref|YP_001086103.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC 17978] gi|213158859|ref|YP_002320857.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057] gi|126389003|gb|ABO13501.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC 17978] gi|213058019|gb|ACJ42921.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057] Length = 615 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ N T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 12 ETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 72 VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + L + + A+++DEAD MLDLGF +D+E I D + + + Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAANRGQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ + R+ I + + ++DI + + + L Sbjct: 191 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355 >gi|260072689|gb|ACX30586.1| hypothetical protein SUP05_FGYC65E210031 [uncultured SUP05 cluster bacterium] Length = 440 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 195/357 (54%), Gaps = 7/357 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY ++T +Q+ L L KDV+ +TGSGKT AFGL L L ++ F S + Sbjct: 2 GYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQKLDVKS--FKAQS----I 55 Query: 79 AIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV E+ L A + V GG + L++G HIVVGTPGR+ + Sbjct: 56 VLCPTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLEHGVHIVVGTPGRIEE 115 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+R L + + +VLDEAD MLD+GF+D I+ I++ P KR+ L+FSAT I ++A Sbjct: 116 HLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQTLLFSATFPNEIASIA 175 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + ++ V S + + + Y + DR A+ +L H ++ ++FC+T+ Sbjct: 176 ERVMQNPTMVEAPSTHEESTIKQYFYKANSADDRMTALRLLLAKHKPESVLIFCNTKIDT 235 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 L + F +A+ G+L Q+ER AL + V +ATDVAARG+D+ L++V+ Sbjct: 236 QDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVLVATDVAARGLDIDALDMVV 295 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + ++ +PE +HR GRTGRAGR G++ + + + L + + +P PS Sbjct: 296 NFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDALELDIDFDRYTDPLPS 352 >gi|184159623|ref|YP_001847962.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii ACICU] gi|332876108|ref|ZP_08443892.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059] gi|183211217|gb|ACC58615.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU] gi|332735726|gb|EGJ66769.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059] Length = 615 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ N T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 12 ETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 72 VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + L + + A+++DEAD MLDLGF +D+E I D + + + Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAANRGQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ + R+ I + + ++DI + + + L Sbjct: 191 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355 >gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C] Length = 501 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/341 (36%), Positives = 192/341 (56%), Gaps = 9/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +Q + L++KDVL AQTG+GKT +F L + + L E R + A Sbjct: 51 KAIKSAGYTIPTPIQSRTIPYILQKKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARA 107 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV + + VA+ IGGVS + R L+ GA +++ TP Sbjct: 108 RIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLERGADVLIATP 167 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH RGK L + ++ +V+DEAD ML++GF D+E I +P R+ L FSAT++P Sbjct: 168 GRLLDHFERGKLLLVG-VEILVIDEADRMLNMGFIPDVERICKVTPFTRQTLFFSATMAP 226 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNILRYHG--AKNA 247 IT L K + V + I + I R V D+ + +++ G KNA Sbjct: 227 EITQLTKQFLHSPVYIEITEASSTAKTITQRLVKSESKPCDKKAVLKELIQNEGDELKNA 286 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+ + +S + L +H F V L G++ Q R+N L ++ + + IA+DVAARG Sbjct: 287 IIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLIASDVAARG 346 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+P + V + ++ ++ E+ +HR GRTGRA R G + ++ Sbjct: 347 LDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIV 387 >gi|168183325|ref|ZP_02617989.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf] gi|182673470|gb|EDT85431.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf] Length = 425 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 194/346 (56%), Gaps = 4/346 (1%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I +AL E GY T +QE + L KD++ AQTG+GKT AF + + Sbjct: 2 LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L +++ + + P+ AL +APTRELA+Q+ E + AV GGVS + + + Sbjct: 62 NL-SKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G I++ TPGR+ D K +++ +++ VLDEAD MLD+G D++ I+ PK Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKI 180 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ IT L + KD +RV + + I V + + ++L Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLL 240 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++A+VF +T+ + K L E + A+ G SQ R AL ++G+ RV + Sbjct: 241 KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLV 300 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATD+AARGID+ +L V + L PE +HR GRTGRAG KG+++ Sbjct: 301 ATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346 >gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311] gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311] Length = 601 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 198/340 (58%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+++GY + +Q+A + + +D++ AQTG+GKT AF L L L + SP Sbjct: 61 KTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLERLQGD----SPL 116 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELA+QV + A + V GG + L+ G +VVGT Sbjct: 117 --PSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINALRRGVDVVVGT 174 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R LN S L+++VLDEADEML +GF DD+E+IL+ P++R++++FSAT+ Sbjct: 175 PGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLFSATMPN 234 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+K Y ++ + I +++++ I +R + + S + A+ +L + I+F Sbjct: 235 EIRRLSKRYLREPAEITIKTKDKEARRIRHRCITMQNSHKLEALNRVLEAVTGEGVIIFA 294 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A + L V L+G++ Q +R ++ +R G + +ATDVAARG+D+ Sbjct: 295 RTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAARGLDVD 354 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + LVI+ ++ + E +HR GRTGRAGR G ++ F+ P+ Sbjct: 355 RIGLVINYDMPFDSEAYVHRIGRTGRAGRSGDAILFITPR 394 >gi|332662156|ref|YP_004444944.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332330970|gb|AEE48071.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 380 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/341 (35%), Positives = 190/341 (55%), Gaps = 2/341 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I AL GY T +Q+ + L KD+L AQTG+GKT AF + + LL + Sbjct: 7 NLIDPILHALESEGYTIPTPIQQKAIPVLLERKDLLGCAQTGTGKTAAFAIPILQ-LLYQ 65 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + S L AL + PTRELA+Q+ G+ AV GGV+ ++ ++ G Sbjct: 66 DKGLSKGPRQLKALILTPTRELAIQISESFGAYGRNCGLKHAVIFGGVNQSKQVEAIRGG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I+V TPGRL D + + L++ H+ VLDEAD MLD+GF D++ I+ P++R+ L Sbjct: 126 LDILVATPGRLLDLMNQQLLSLQHINTFVLDEADRMLDMGFVHDVKRIITRLPQRRQSLF 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ P I LA + V+V ++ + ++ V D+ N ++ +LR Sbjct: 186 FSATMPPEIQKLANTILSNPVKVEVSPISSTTEMVEQMVYFVEKRDKRNLLIQLLRSPNV 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K+A+VF T+ + + + + + A+ G SQ R +AL ++G+ RV +ATD+A Sbjct: 246 KSALVFTRTKHGADKINRDIVKAGIRSNAIHGNKSQNARQSALNGFKEGKLRVLVATDIA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ +L VI+ +L + PE +HR GRTGRAG G+++ Sbjct: 306 ARGIDVDNLSHVINYDLPNIPETYVHRIGRTGRAGASGIAL 346 >gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] Length = 492 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 194/355 (54%), Gaps = 5/355 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++ +GY T +Q + L KDV+ +AQTG+GKT F L L LL+ +R + Sbjct: 25 ILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLSRGNR-A 82 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV ++ + AV GGV + + L G I+V Sbjct: 83 QAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQISKLGKGVDILVA 142 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D +N + L+ +VLDEAD MLD+GF DI+ IL + P KR+ LMFSAT S Sbjct: 143 TPGRLLDLYNQGAVNFNQLEVLVLDEADRMLDMGFIHDIKKILRALPAKRQNLMFSATFS 202 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N ++ +V + A++++++ + + +VF Sbjct: 203 DDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQKTAALIHLIKQNDWQQVLVF 262 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L A+ G SQ R+ AL + G RV +ATD+AARGID+ Sbjct: 263 SRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGLVRVLVATDIAARGIDI 322 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFRE 362 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL ++ Sbjct: 323 DQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLRDIERLIKK 377 >gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4] gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4] Length = 471 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 195/361 (54%), Gaps = 10/361 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T++Q + L +DVL AQTG+GKT +F L + + L R A Sbjct: 15 AVDASGYTEPTAIQAGAIPHVLERRDVLGIAQTGTGKTASFTLPMLTLLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV E + VA+ IGGVS + + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVQENFEKYGTNHKLNVALLIGGVSFGEQDKKLDRGTDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L + ++ +V+DEAD MLD+GF DIE I P R+ L FSAT+ P I Sbjct: 132 RLLDHFERGKLLLQGVEVLVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAK---NAI 248 L + + ++ RV +A + +I + L A +D +LR GA+ NAI Sbjct: 192 QRLTETFLQNPARVEVARTSSTSENISH--YLRAAEGKDYEKRAVLRELLEGAEDLNNAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+ + +S + L H + V +L G++ Q+ R L + G ++ IA+DVAARG+ Sbjct: 250 VFCNRKRDISTLFRSLERHGYSVGSLHGDMDQRTRMTMLDNFKKGTIKLLIASDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+P++ V + ++ S+ E+ +HR GRTGRAGR G++ ++ + Q+ E + + + Sbjct: 310 DIPEVSHVFNYDVPSHAEDYVHRIGRTGRAGRTGVAYTLVSGSDQKYLESIEKLIAQDIE 369 Query: 369 W 369 W Sbjct: 370 W 370 >gi|295692132|ref|YP_003600742.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1] gi|295030238|emb|CBL49717.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1] Length = 494 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L+ KDV+ AQTG+GKT AFGL + + + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQMIDKKE------ 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131 A A+ I PTRELA+Q EL L V V GG + R+ R L++ I+VGT Sbjct: 68 KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +N+ +KAVVLDEADEMLD+GF DIE IL + +++ L+FSAT+ Sbjct: 128 PGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + V I ++ I+ V S++ + + ++ G A+VF Sbjct: 188 PILRIGEKFMDHPKIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R + L+ R+G+ + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349 >gi|170754379|ref|YP_001780277.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str. Okra] gi|169119591|gb|ACA43427.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str. Okra] Length = 425 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 193/346 (55%), Gaps = 4/346 (1%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I +AL E GY T +QE + L D++ AQTG+GKT AF + + Sbjct: 2 LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGIDLVGCAQTGTGKTAAFAVPVLQ 61 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L ++ + + P+ AL +APTRELA+Q+G E + AV GGVS + + + Sbjct: 62 NL-SKGKKVNKNPRPIRALVLAPTRELAIQIGDSFECYGKYINLKSAVIFGGVSQNPQTK 120 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G I++ TPGR+ D K +++ +++ VLDEAD MLD+G D++ I+ PK Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ IT L + KD +RV + + I V + + ++L Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPASSTVDTITQEVYHVRKKQKRALLKHLL 240 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++A+VF +T+ + K L E + A+ G SQ R AL ++G+ RV + Sbjct: 241 KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLV 300 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATD+AARGID+ +L V + L PE +HR GRTGRAG KG+++ Sbjct: 301 ATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346 >gi|257091933|ref|YP_003165574.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044457|gb|ACV33645.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 474 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 138/401 (34%), Positives = 214/401 (53%), Gaps = 28/401 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69 I +AL++ GY T VQ+ + P + +D++VS+QTGSGKT AF L AL L E Sbjct: 12 ILKALTDSGYSEPTPVQQQAIPPAIEGRDLMVSSQTGSGKTAAFMLPALHRFALQERPAA 71 Query: 70 SP-------------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI- 109 P A+ P L + PTRELA+QV E + V AV I Sbjct: 72 VPRPSERGAARPRGHDRQRFQAAQPRMLVLTPTRELALQVTAATEKYGRQLHHVRAVAIL 131 Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169 GG+ ++ L I+V TPGRL DH+ ++ S L+ +VLDEAD MLD+GF +DI Sbjct: 132 GGMPYPKQMELLGRNPEILVATPGRLIDHMSSGKIDFSQLQILVLDEADRMLDMGFIEDI 191 Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-AL 228 E I+ ++P R+ L+FSAT+ + LA+ + A+R+ + + + +H +I+ R V L Sbjct: 192 ERIVAATPGSRQTLLFSATLDGTVGELAQRMTRAALRIQVDATSARHDNIEQRMHFVDDL 251 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 + ++ + ++LR A+VF +T+ + L AL G++ Q R+ L Sbjct: 252 AHKNRLLDHLLRDATIDQALVFTATKRDADTVSDRLNVAGLNAAALHGDMHQGARNRTLA 311 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 MR G+ R+ +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR G+++ ++ Sbjct: 312 AMRRGQVRILVATDVAARGIDVPTITHVFNYDLPKFAEDYVHRIGRTGRAGRNGLAISLV 371 Query: 349 PQNMQ---RRAERLFREA---NVSVVWEPAPSVEAIRERDA 383 R+ ER ++ + + EP A++ R A Sbjct: 372 HHAEHFNVRKIERFTKQPIPVEIVIGHEPTRRPIAVKPRPA 412 >gi|54293256|ref|YP_125671.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens] gi|53753088|emb|CAH14535.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens] Length = 414 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 188/340 (55%), Gaps = 6/340 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + A+SE GY TS+Q + L D+L SAQTG+GKT +F L + L + + + Sbjct: 12 LNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPI----LQKAGQQT 67 Query: 71 PASAP--LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 PAS L + PTRELA+QV + + AV GGV H + + L +G I+ Sbjct: 68 PASPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEIL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + + + + +VLDEAD MLD+GF DI+ I+ P KR+ L+FSAT Sbjct: 128 VATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 +P + TLA+N AV ++IA N I V + + + ++L + + Sbjct: 188 FTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ K LAE VA+ G SQ +R+ AL + G+ + IATD+AARGI Sbjct: 248 VFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ L V++ +L PE+ +HR GRTGRAG G++V ++ Sbjct: 308 DIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLV 347 >gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus M876] gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus M899] gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus C101] gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus 58-424] gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus M809] gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus M1015] gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus M876] gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus C101] gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus M899] gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus M1015] gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus 58-424] gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus M809] Length = 506 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L +L + Sbjct: 15 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVLGKQ------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 69 -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|52842336|ref|YP_096135.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629447|gb|AAU28188.1| ATP dependent RNA helicase DbpA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 468 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/356 (36%), Positives = 205/356 (57%), Gaps = 12/356 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F P Q + ++L+ Y N+T +Q L LR +D++ A+TGSGKT AF L L + Sbjct: 13 FSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDMIAQAKTGSGKTAAFALCLLNN 72 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 L F A L + PTRELA QV + + L V + + GG+ + + Sbjct: 73 L---KISFFVVQA---LVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDS 126 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++GAHI+VGTPGR+ H++ L++S +KA+VLDEAD MLD+GF DDI+ I+ PK+R Sbjct: 127 LRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQR 186 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239 + L+FSAT I L+K + KD V++ + + DI+ V+ + ++ ++L Sbjct: 187 QTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEE-IDIEQHFYEVSRHAQKFPLLKSLL 245 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 ++ + ++FC+T+ T L F +AL+G++ Q ER A+ + + + Sbjct: 246 LHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILV 305 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ATDVAARG+D+ +L VI+ +L+ + + +HR GRTGRAG KG+++ V P + QR Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQR 361 >gi|33861657|ref|NP_893218.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634234|emb|CAE19560.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 592 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 153/527 (29%), Positives = 257/527 (48%), Gaps = 28/527 (5%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 ++I +L +GY T +Q+A + + +D+L AQTG+GKT AF L L L EN++ Sbjct: 59 KLILNSLESKGYKTPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL--ENNK 116 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 S A L + PTRELA QV + A++ + + I GG + L+ I Sbjct: 117 ESNAKV---LVMTPTRELATQVADSFKSYSAESTNLRTLAIYGGTDFRNQISSLKRKTDI 173 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DHIR I+++ +VLDEADEML +GF +DIE+I+D P+ ++M++FSA Sbjct: 174 VVGTPGRIMDHIRQGTFKINNISCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMVLFSA 233 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I +AK Y + + I S ++ I + + V + +A+ IL + Sbjct: 234 TMPNEIRNIAKKYLNEPAEILIKSVKQETQLITQKYINVQRHHKLDALKRILEITN-EGV 292 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + + L V L+G++ Q +R N + ++ G + +ATDVAARG Sbjct: 293 IIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARG 352 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ ++LVI+ + + E HR GRTGRAGR G ++ + Q + L + Sbjct: 353 LDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRNKI 412 Query: 368 VWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKK-----MVDVLLAKHDPEK----I 416 P+ + I E+ +++ + LD +EKK ++D L KH E + Sbjct: 413 EEIEIPNNKIINEKRMGKLITNLNESSLDQENNEEKKALMIDILDTLREKHSMEDSNIAM 472 Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRD-------RFRDDSRAFKVGGGSRDNFKGSSWF 469 AA L I E+ + + + D + D+F+ + Sbjct: 473 AAINLAIGNKSFFINEDESWLYRQNNSDRNRSNRNGNNRMRNTNRRNNYQNDSFET---Y 529 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 + G + ++ +C S+ IN + IG I++ + + V++ D Sbjct: 530 KFNFGKMDRVRVANIISSICTSTNINGRLIGKIQIFNEYSLVDLPRD 576 >gi|323519553|gb|ADX93934.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii TCDC-AB0715] Length = 606 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ N T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 12 ETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF 71 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 72 VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + L + + A+++DEAD MLDLGF +D+E I D + + + Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAANRGQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ + R+ I + + ++DI + + + L Sbjct: 191 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355 >gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca] Length = 710 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 206/361 (57%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 112 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 171 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 172 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 229 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 230 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 289 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT P + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 290 EDNPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 349 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 350 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 407 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 408 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 467 Query: 350 Q 350 + Sbjct: 468 R 468 >gi|254457480|ref|ZP_05070908.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1] gi|207086272|gb|EDZ63556.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1] Length = 531 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/418 (32%), Positives = 222/418 (53%), Gaps = 10/418 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q I ++ + G+V + +Q A + L+ +D++ A TG+GKT AFGL + + N Sbjct: 25 LSQDILRSVKQAGFVTPSPIQAAAIPLILQGRDIVGQAHTGTGKTAAFGLPALNNIDVRN 84 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 L I PTRELA QV EL GG S +R+ + GA Sbjct: 85 -------GVEILVITPTRELATQVSDELFKYGRNINAKTVTVYGGSSYNRQIDLIDRGAS 137 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKA-VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VV TPGRL D ++ KGL + + VVLDEADEMLD+GF DDI I P KR+ L+F Sbjct: 138 VVVATPGRLLDILK-KGLVKNFTPSIVVLDEADEMLDMGFLDDINEIFSYLPTKRQTLLF 196 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA+ + ++I +SDI+ ++ S+RD+AI+ ++ K Sbjct: 197 SATMPKPIKLLAERILDNPEFISITKGETTNSDIEQLYYVIEESERDDAIIRLMDSEDTK 256 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++VFC T++ V R + VL+ + L G++ Q++R ++ + +V +ATDVAA Sbjct: 257 KSVVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKSNSVKVLVATDVAA 316 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + ++ V + + +PE+ +HR GRTGRAG KG ++ ++ + +R+ ++ Sbjct: 317 RGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKQKVGT 376 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 S+ PS +RE + +++ + I + K++D L D E++A + + Sbjct: 377 SMGHAYVPSKNDLRESTVEALVK-KVEDHKIYDEAHKVLDRLREDIDEEQMAYKLISM 433 >gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4] Length = 398 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 189/335 (56%), Gaps = 9/335 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL ++G T +Q ++ + +DV+ A+TGSGKT+AF L + + E Sbjct: 16 ALEQQGITEPTPIQTEVIPLMVEGRDVIAQAKTGSGKTLAFILPMLEKVDLEK------I 69 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN-GAHIVVG 130 A L +APTRELA+QV EL+ L V V GG V ++ L+ HIVV Sbjct: 70 AVQGLIVAPTRELAIQVTDELKKLVELEFPEVNVLAVYGGQDVEKQLHKLETRNIHIVVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+R +++S L ++LDEAD+ML +GF ++E I++++P R+ +FSATIS Sbjct: 130 TPGRLLDHMRRGTIDLSELDMLILDEADQMLHIGFLPEVEQIIEATPPTRQTALFSATIS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + TLAK YQ+ V + + R +I+ V + A+V +++ I+F Sbjct: 190 KDVRTLAKRYQQQPYTVQVKDKERLVEEIEQFVVETTDRKKLQALVEVIKETQPFMGIIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T VS+ L F V L G+LSQ +R N ++ RD + ++ IATDVAARG+D+ Sbjct: 250 CRTIRRVSKLHMELKAKGFLVDELHGDLSQAKRENVMKRFRDAKIQLLIATDVAARGLDV 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + V + ++ + E+ +HR GRTGRAG GM++ Sbjct: 310 EGVTHVYNYDIPQDVESYIHRIGRTGRAGETGMAI 344 >gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella benthica KT99] Length = 444 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 201/354 (56%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+SE GY +T VQ+ + R +DVL SAQTG+GKT AF L + + Sbjct: 15 FSFAPEIL-RAISECGYQEMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMF 73 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +N + S AL + PTRELA Q+ + V V GGV V + + L+ Sbjct: 74 -DNPMPTQRSNTRALILTPTRELAAQIADNISDYSKYIDVSVLTIYGGVKVDSQAQKLKR 132 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I+V TPGRL +H++ LN+S+++ +VLDEAD MLD+GF DI+ I+ + K+R+ L Sbjct: 133 GTDIIVATPGRLLEHLQACNLNLSNVEFLVLDEADRMLDMGFISDIQKIMQAVNKQRQNL 192 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + V+ + S N Q+S D + +V ++ + G Sbjct: 193 LFSATFSSAVKKLANDM---LVKPKLISLNSQNSTADTVSQVVYPVEQRRKRELLSELIG 249 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KN ++F +TR + + K L + GE +Q R AL+ ++G+ R +A Sbjct: 250 KKNWQQVLIFTATRDAADKLVKELNLDGITSSVVHGEKAQGNRRRALREFKEGKVRALVA 309 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+ DLE V++ +L E+ +HR GRTGRAG+ G+++ ++ + +R Sbjct: 310 TEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 363 >gi|332760197|gb|EGJ90493.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-671] Length = 435 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 201/369 (54%), Gaps = 14/369 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY+ +T VQ A L L KDV V A+TGSGKT AFGL L + A + AL Sbjct: 2 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------AL 55 Query: 79 AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 + PTRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL Sbjct: 56 VLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLL 114 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 DH++ +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI + Sbjct: 115 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 174 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 + Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 175 SGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 233 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 L E ++L G+L Q R L +G ARV +ATDVAARG+D+ LELV Sbjct: 234 CQAVCDALNEVEQSALSLHGDLEQ--RDQTLVRFANGSARVLVATDVAARGLDIKSLELV 291 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSV 375 ++ EL+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ Sbjct: 292 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPAN 350 Query: 376 EAIRERDAQ 384 +I +A+ Sbjct: 351 SSIVTLEAE 359 >gi|256844404|ref|ZP_05549890.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus 125-2-CHN] gi|256613482|gb|EEU18685.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus 125-2-CHN] Length = 494 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L+ KDV+ AQTG+GKT AFGL + + + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQMIDKKE------ 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131 A A+ I PTRELA+Q EL L V V GG + R+ R L++ I+VGT Sbjct: 68 KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +N+ +KAVVLDEADEMLD+GF DIE IL + +++ L+FSAT+ Sbjct: 128 PGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + V I ++ I+ V S++ + + ++ G A+VF Sbjct: 188 PILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R + L+ R+G+ + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349 >gi|312883442|ref|ZP_07743168.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC BAA-2122] gi|309369058|gb|EFP96584.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC BAA-2122] Length = 458 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/413 (32%), Positives = 216/413 (52%), Gaps = 24/413 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L G+ +T++Q+ L L KDV+ +TGSGKTV F L + + L E R Sbjct: 17 TLDSLGFSQMTAIQQQALPAILEGKDVIGQGKTGSGKTVTFSLGILNNLNVERFRIQ--- 73 Query: 74 APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV +E+ L + V V GG+ + + L++GAHI+VGTP Sbjct: 74 ---TLVLCPTRELADQVAKEIRTLARGRHNVKVLTLCGGMPMGPQIGSLEHGAHIIVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ + S + VLDEAD MLD+GF D I+ ++ P R+ L+FSAT Sbjct: 131 GRILDHMSKGRIQFSDINTFVLDEADRMLDMGFEDAIDTLVSELPINRQTLLFSATYPKH 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ +A + + + + + + + +D+A+ +L ++ ++++VFC+ Sbjct: 191 IEVLAEKVTSEAQMIKTQTHDEKTTIKQFFYEVDGTEAKDDALETLLLHYKPESSVVFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L F V L G++ Q+ER AL + + +ATDVAARG+D+ + Sbjct: 251 TKKEVQDVSDELDRLGFNVAELHGDMEQRERERALITFANKSTSILVATDVAARGLDVDN 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+ V + ELS +PE +HR GRTGRAG +G++ R R+ E Sbjct: 311 LDAVFNFELSRDPEVHVHRIGRTGRAGAEGLAFSFFTARESYRVARI----------EEY 360 Query: 373 PSVEAIRERDAQRILQDPLF--LDSIQ--GDEKKMV---DVLLAKHDPEKIAA 418 +E + + Q++++ P + + +IQ G +K+ V D+L A IAA Sbjct: 361 MDIECLPSQLPQKLIERPFYPKMATIQILGGKKQKVRAGDILGALTKQANIAA 413 >gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980] gi|160358660|sp|A7EML8|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3 gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980 UF-70] Length = 482 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 190/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L+ +D++ A+TGSGKT AF L + +LL D+ P Sbjct: 69 EACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLL---DKPQPL 125 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+ + E L + V AV +GG+ + + L HI+V TP Sbjct: 126 ---FGLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPHIIVATP 182 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +V+DEAD +LDL F ++ IL P++RR +FSATIS Sbjct: 183 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATISS 242 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + KD +RV+I+S Q S + + + L +D ++ +L ++AI+F Sbjct: 243 KVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLVHKDTYLIYLLNEFAGQSAIIF 302 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 303 TRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDI 362 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ ++ + + +HR GRT RAG+ G ++ + Q Sbjct: 363 PSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQ 402 >gi|227495476|ref|ZP_03925792.1| superfamily II helicase [Actinomyces coleocanis DSM 15436] gi|226831023|gb|EEH63406.1| superfamily II helicase [Actinomyces coleocanis DSM 15436] Length = 616 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 134/354 (37%), Positives = 197/354 (55%), Gaps = 12/354 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + A++E G+ T +QE + L +D++ AQTG+GKT AFGL + LA Sbjct: 11 NLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLPM----LAH 66 Query: 66 NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 D P +A A+ +APTRELA+Q +E A V V + GG S + + L++ Sbjct: 67 ID---PGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGLKS 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRR 181 GA +VVGTPGR+ D I L ++++ +VLDEADEML +GF +D+E I S P+ KR Sbjct: 124 GAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGKRI 183 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT+ I +A + D VR+ +A ++ +I +V + A+ +L Sbjct: 184 TALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVLAT 243 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 AIVF TR +A F A+SG++SQ ER + +RDG V +AT Sbjct: 244 RDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLVAT 303 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 DVAARG+D+ + LVI+ ++ E +HR GRTGRAGR G S+ F P+ R Sbjct: 304 DVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFR 357 >gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase domain-containing protein [Thermobispora bispora DSM 43833] gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM 43833] Length = 618 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/348 (37%), Positives = 195/348 (56%), Gaps = 13/348 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP+ I +AL G V +QE L L +D++ A+TG+GKT AFG+ TL Sbjct: 16 IPE-IADALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGI---PTLQLIG 71 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 P L +APTRELA+QV +L K G + GG + + L+NG Sbjct: 72 KPRKNRKKPRGLILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQIEALKNGVD 131 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++S + +VLDEAD MLDLGF DIE I+ P+KR+ ++FS Sbjct: 132 VVVGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPEKRQTMLFS 191 Query: 187 ATISPAITTLAKNY--QKDAVRVNIA---SENR-QHSDIDYRAVLVALSDRDNAIVNILR 240 AT+ I L++ Y + +R IA +E + + + YR + D+ + +L+ Sbjct: 192 ATMPGEIVALSRRYLNRPTHIRAEIAEIEAETKPRTTQFVYRTHRM---DKIEILARVLQ 248 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VFC T+ + L + F V A+ G+LSQ +R AL+ R+G+ V +A Sbjct: 249 STELTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKINVLVA 308 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ D+ VI+ +L + + +HR GRTGRAGR G+++ + Sbjct: 309 TDVAARGIDVDDVTHVINYDLPQDEKTYIHRIGRTGRAGRSGVAITFV 356 >gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902] gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902] Length = 458 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 199/367 (54%), Gaps = 11/367 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--RFSP 71 ++ E GY++ T +Q + L+ KD++ SAQTG+GKT AF L + L AE+ R+ Sbjct: 38 SIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIELLRAEDKPKRYQV 97 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S L + PTRELA QV + + GGVS+ + + LQ G I+V T Sbjct: 98 HS----LVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRLQGGVDILVAT 153 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D I K + +LK +VLDEAD MLD+GF DI+ +++ PK R+ +MFSAT S Sbjct: 154 PGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQNMMFSATFST 213 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA D V + + +N+ I++ ++ + + + ++++ + K +VF Sbjct: 214 PIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLCHLIKTNKWKQVLVFA 273 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + K+L + A+ G SQ R+ AL+ ++G ++ +ATD+AARGID+ Sbjct: 274 RTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVATDIAARGIDIH 333 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L VI+ +L + E+ +HR GRTGRAG G ++ ++ E L +A + P Sbjct: 334 QLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAE-----EALLLKAIEKFIGNP 388 Query: 372 APSVEAI 378 P V+ + Sbjct: 389 LPKVDVV 395 >gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-134-V-Col7a] gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-134-V-Col7a] Length = 523 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 187/341 (54%), Gaps = 7/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ G+ T +Q+ + + KD++ AQTG+GKT AFGL + + N Sbjct: 17 ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGSNRHVQ--- 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + ++PTRELA+QV EL + T + GG ++R+ R L+ I+V TPG Sbjct: 74 ---VVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKNPQIIVATPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + +K VVLDEADEML++GF DDI IL + P+ + L+FSAT+ AI Sbjct: 131 RLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ Y + + + I+ + V + + + + + AI+F T Sbjct: 191 RELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDLQAPELAIIFTRT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T+ L + + + G+LSQQ+R + ++ R+G + +ATDVAARG+D+ + Sbjct: 251 KRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 V + +L +PE+ HR GRTGRAG+ G + FVIP+ ++ Sbjct: 311 SHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIE 351 >gi|169794570|ref|YP_001712363.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE] gi|260557002|ref|ZP_05829219.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606] gi|169147497|emb|CAM85358.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE] gi|260409608|gb|EEX02909.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606] Length = 619 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62 + + +AL G+ N T VQE + L KD+LVS+QTGSGKT AF LA T Sbjct: 16 ETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF 75 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 76 VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 135 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA +VV TPGRL D + + L + + A+++DEAD MLDLGF +D+E I D + + + Sbjct: 136 K-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAANRGQ 194 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ + R+ I + + ++DI + + + L Sbjct: 195 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 254 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 255 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 314 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 315 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 359 >gi|269987038|gb|EEZ93313.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 435 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 196/337 (58%), Gaps = 8/337 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I AL E + T VQ+ + +L KDV+V ++TGSGKT AF + + +++ + Sbjct: 6 NLRKEILTALHEMKFEEPTEVQKQAIPLELEGKDVVVKSKTGSGKTAAFVIPILNSI-EK 64 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N+R A+ I PTRELA+QV + + + GG S++ + R+++NGA Sbjct: 65 NER------QAAMIITPTRELALQVTEVVREIGRHMQLKAVTIYGGASINYQIREIRNGA 118 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +I++GTPGRL D ++ + LN ++ +VLDE D MLD+GF DDI++IL PKKR+ + F Sbjct: 119 NIIIGTPGRLIDLMKRRELNTDSIRFLVLDEVDIMLDMGFIDDIKYILSKLPKKRQTMFF 178 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SATI I + NY + + VNI + + I + + + SD+ ++ L + Sbjct: 179 SATIPEEIKHITLNYTNNPINVNIDAGEVTVNTIQHFYSIASGSDKFATLLAYLNEKKPE 238 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+FC T+ + + ++ Q V + G LSQ R ++L M ++G + IAT+VAA Sbjct: 239 KAIIFCKTQRNAEKIHSIMQNMGMQAVLMHGGLSQNRREHSLNMFKEG-VNMLIATNVAA 297 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 RG+D+ ++ +I+ + ++P+ +HR GR+ R G+ G Sbjct: 298 RGLDIDNVSDIINFDAETDPKAYVHRVGRSARMGKSG 334 >gi|228991413|ref|ZP_04151368.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442] gi|228768343|gb|EEM16951.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442] Length = 433 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/348 (34%), Positives = 197/348 (56%), Gaps = 10/348 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 9 ISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL------- 61 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E+E L + + V GG V ++ R L+ Sbjct: 62 EKIDPESSDVQALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLKGN 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DH+R + + +S++ +VLDEAD+ML GF DIE IL+ +P+ ++ ++ Sbjct: 122 THIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTML 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y K+ + I S ++I + + +A+ +++ Sbjct: 182 FSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQGIIETTDRTKQDALRHVMDRDQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + + L G+LSQ +R ++ RD + + IATDVA Sbjct: 242 FLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ FV P++ Sbjct: 302 ARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKD 349 >gi|158514834|sp|A3LS22|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3 Length = 484 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/369 (33%), Positives = 204/369 (55%), Gaps = 10/369 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+++ EA+ + + T +Q + L KD++ AQTGSGKT AF + + +L Sbjct: 79 VPELL-EAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQ 137 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + L +AP RELA Q+ + L + GV +GG+ + + RDL H Sbjct: 138 TPY------FGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPH 191 Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGR+ DH+ KG ++ LK V+DEAD++LDL F ++ IL P KR +F Sbjct: 192 IIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLF 251 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ I L + + VRV ++S+ + ++ +LV+ ++ ++++L K Sbjct: 252 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLLNEFVGK 311 Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F TRA R T +L L F V L G+L+Q +R +L + G A + IATDVA Sbjct: 312 SIIIFARTRAHTQR-TSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVA 370 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+P +++VI+ ++ ++ + +HR GRT RAGR G S+ ++ Q R+ + Sbjct: 371 ARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQ 430 Query: 365 VSVVWEPAP 373 + +P+P Sbjct: 431 KKLPKDPSP 439 >gi|152992584|ref|YP_001358305.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1] gi|151424445|dbj|BAF71948.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp. NBC37-1] Length = 492 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 207/383 (54%), Gaps = 12/383 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A++E G+ + VQ+ + L D++ AQTG+GKT AFGL + S + A+ Sbjct: 7 NLKDTIQAAVAEAGFKEPSPVQKDAIPLVLEGHDMIAQAQTGTGKTAAFGLPIMSMMKAD 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L I PTRELA+QV EL +G+ A GG + ++ ++ A Sbjct: 67 -------GSVEGLVIVPTRELAMQVSDELFRFGKLSGLKTATVYGGTAYGKQIERIKQ-A 118 Query: 126 HIVVGTPGRLCDHIRGKGLNIS-HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVV TPGRL D + + ++ H VVLDEADEMLD+GF D+I+ I PK+R+ LM Sbjct: 119 SIVVATPGRLQDLLMSGKIKLNPHF--VVLDEADEMLDMGFLDEIKNIFTFLPKERQTLM 176 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LA+ + V+I +S I +V +RD+A+V ++ Y Sbjct: 177 FSATMPNGIRKLAEQILNNPKTVSITKSESTNSKITQYYYVVQERERDDALVRLIDYKNP 236 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC + V R L F+V L G++ Q++R ++ + G + +ATDVA Sbjct: 237 EKCIIFCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGIDIFVATDVA 296 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ D+ V + + + E+ +HR GRTGRAG+ G ++ ++ N R +R+ ++ Sbjct: 297 ARGLDVNDVTHVFNYHIPFDSESYVHRIGRTGRAGKTGEAITLVSPNELRTIKRIEKDVG 356 Query: 365 VSVVWEPAPS-VEAIRERDAQRI 386 + + P+ +E R+ + I Sbjct: 357 TKMTTQVIPTRIEVQNNRNDELI 379 >gi|330994757|ref|ZP_08318679.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp. SXCC-1] gi|329758018|gb|EGG74540.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp. SXCC-1] Length = 376 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/352 (37%), Positives = 193/352 (54%), Gaps = 13/352 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFS 70 AL+ G +++Q A++ P + +DV A TGSGKTVAF + S L+A +N R Sbjct: 20 ALARMGLQAPSAIQGAVIPPVMAGRDVEARAGTGSGKTVAFAAPIVSMLMARETDNSRVR 79 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L +APTRELA Q+ L L G+ V GG + + R L +G IVVG Sbjct: 80 ------CLVLAPTRELAGQIAGVLRGLARGGGLRVMQATGGTARVAQARTLADGTAIVVG 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D + G L++S + VLDEAD MLD GF +++ + + P + + L+FSAT+ Sbjct: 134 TPGRVTDLVHGGELDLSAVGIFVLDEADRMLDPGFAEEMLALAAALPPRHQTLLFSATLP 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 PA+ LA RV++A E+ I A+ V + + A + LR +G + +VF Sbjct: 194 PAMAELAARLLHRPTRVSMAVEDAPAPRIAQYAIFVPMRHKTQATLACLRQYGTQRVMVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR + ++ L +A+ G+ SQ R L+ R GR V +ATDV ARGID+ Sbjct: 254 VRTRQEADGVARAISA-LVPAIAIHGDHSQARRERMLRDFRQGRVGVLVATDVMARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 D+ LVI+ ++ PE+ +HR GRT RAGR+G++V P+ Q R ERL Sbjct: 313 DDVALVINHDIPPQPESYVHRIGRTARAGRRGVAVALCAPEERQALREIERL 364 >gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis] gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis] Length = 448 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 114/345 (33%), Positives = 192/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + TLL Sbjct: 26 VTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQTLLESP 85 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + + L H Sbjct: 86 QRL------YALVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKPH 139 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 140 IVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + KD V+ ++S+ + + V + +D+ +V IL Sbjct: 200 SATMTKKVHKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGN 259 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++ Q +R AL + + +ATDVA+ Sbjct: 260 SFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSILLATDVAS 319 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 320 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQ 364 >gi|91762707|ref|ZP_01264672.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique HTCC1002] gi|91718509|gb|EAS85159.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique HTCC1002] Length = 582 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/372 (34%), Positives = 206/372 (55%), Gaps = 19/372 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + +L + + T +Q + L KD+L +AQTG+GKT+AF + L + L+ + Sbjct: 9 IEDSLKNSLEKMKFTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPLINKLILDK 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125 + F AL + PTRELA QV ++ + + K + A+ IGG ++ ++ R L N + Sbjct: 69 NAF-------ALVMCPTRELATQVMAAIKSIISDKINIKTALLIGGEAMQKQLRQLGNRS 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ DH++ K LN+S K +VLDE D MLD+GF IE IL PK + L+F Sbjct: 122 RIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVPKDHQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +++ Y R++ S + + I + V ++ + +V+ ++ K Sbjct: 182 SATLPQNIVRISERYLNKPQRISTGSTSVPIAKIKQETLQVFKENKYDQLVD--QFIARK 239 Query: 246 NAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +I VF T+ + K L E A+ G+L Q +R + R G R+ IATDVA Sbjct: 240 GSILVFVKTKRGADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRILIATDVA 299 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFR 361 ARG+D+P ++ VI+ +L PE+ +HR GRT RAG +G ++ F+ P ++M +L Sbjct: 300 ARGLDIPLIQHVINFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWNEISKL-- 357 Query: 362 EANVSVVWEPAP 373 + ++PAP Sbjct: 358 ---IDPNFKPAP 366 >gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica DSM 16294] Length = 417 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 134/375 (35%), Positives = 202/375 (53%), Gaps = 11/375 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY T +Q+ + L +KD+L AQTG+GKT F L L LL+ Sbjct: 16 ILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFTLPLLE-LLSREKPTK 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA QVG + V GGV ++ + +L+ G IV+ Sbjct: 75 QKHKIRALILTPTRELAAQVGESVALYGKHLPFKSTVIFGGVKINPQISNLRKGTDIVIA 134 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHI K +++ ++ ++LDEAD MLD+GF +DI+ IL+ P +R+ L+FSAT S Sbjct: 135 TPGRLLDHISQKTIDLREVEYLILDEADRMLDMGFINDIKKILNIIPNQRQTLLFSATYS 194 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIV 249 AI L+ + + +A N S+I +AV R ++ L G + +V Sbjct: 195 DAIKKLSNQFLNAPKLIEVARANTS-SEIVKQAVYHVDKTRKRELLTHLINEGKWQQVLV 253 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R + L VA+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 254 FTRTKHGANRLSGQLESDGITAVAIHGNKSQNARTKALADFKKGDVRVLVATDIAARGID 313 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVS 366 + L VI+ EL + E+ +HR GRTGRAG G ++ ++ + E+L ++ ++ Sbjct: 314 IDQLPHVINYELPNVSEDYVHRIGRTGRAGNGGEAISLVCVDEDEFLQNIEKLIKK-DIP 372 Query: 367 VVW----EPAPSVEA 377 VW +P PS++A Sbjct: 373 KVWLKGFKPDPSIKA 387 >gi|300175700|emb|CBK21243.2| unnamed protein product [Blastocystis hominis] Length = 485 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 116/345 (33%), Positives = 199/345 (57%), Gaps = 10/345 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLRE---KDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + +A+ G+ + +S+Q +L L+E KD++ A+TGSGKT AF + + L+ Sbjct: 62 TLCQAIDNLGWKHPSSIQRDVLKIALQEDQNKDIIAIAETGSGKTGAFAIPIIQRLIDNP 121 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + G+ AV +GG+ + ++ L H Sbjct: 122 QRM------YALIVTPTRELAFQISEQFEALGSSVGLKTAVIVGGIDMVQQALALARKPH 175 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL DH+ KG +++ +K +VLDEAD L + F + I+ IL PK+R +F Sbjct: 176 VVVGTPGRLVDHLENTKGFSLNTMKYLVLDEADRCLSMDFEEAIDKILSCFPKERVTYLF 235 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + +D V++ ++S+ + S + + + + ++ + I+ K Sbjct: 236 SATMTQKVVKLQRASLQDPVKIQVSSKYQTVSTLIQQYLFIPAKYKECYLAFIMNEFRGK 295 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + I+F ST +S T L F+ V ++G LSQ +R AL ++G + IATDVA+ Sbjct: 296 STILFVSTCSSSQLLTLFLRNLGFKAVCINGNLSQVKRLGALNKFKEGARNILIATDVAS 355 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P+++LV++ ++ N ++ +HR GRT RAG+ G ++ + Q Sbjct: 356 RGLDIPEVDLVVNYDIPGNGKDYVHRVGRTARAGKSGRAITFVTQ 400 >gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814] gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814] Length = 478 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/351 (36%), Positives = 190/351 (54%), Gaps = 9/351 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ E GY T +Q + ++ +DV AQTG+GKT AF L + L Sbjct: 10 PRVLS-AVKETGYTEPTPIQAQAIPAIIQGRDVTGIAQTGTGKTAAFVLPMIHKL---GQ 65 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P L + PTRELA QV E + +A+ IGGVS + + L G + Sbjct: 66 GRAKARMPRTLILEPTRELAAQVADNFEKYGVNHKLNMALLIGGVSFADQDKKLTAGVDV 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I P +R+ L+FSA Sbjct: 126 LIATPGRLMDHFERGRLLMTGVQMLVIDEADRMLDMGFIPDIEKICKLLPPRRQTLLFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA--- 244 T+ P I L K +Q D ++ +A Q +++ + V + SD+D ILR A Sbjct: 186 TMPPEIAKLTKQFQNDPKQIEVARPA-QTAELITQHVTKSPSDKDEIKRGILRAIIASCE 244 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KN IVFC+ + V K L H F + G+LSQ R L+ ++G + +A+DV Sbjct: 245 VKNGIVFCNRKREVDIVAKSLNAHGFDAAPIHGDLSQSYRMETLEKFKNGDLTLLVASDV 304 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 AARG+D+PD+ V + N ++ +HR GRTGRAGR G S ++ Q+ Sbjct: 305 AARGLDIPDVGHVFNYAPPPNSDDYVHRIGRTGRAGRTGESYTIVSPRDQK 355 >gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum] gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum] Length = 451 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 115/355 (32%), Positives = 201/355 (56%), Gaps = 10/355 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ +A + + + +Q+ + L+ KDV+ A+TGSGKT AF L + +LL R+ Sbjct: 29 VLCKACEQLKWAQPSKIQKEAIPVALQGKDVIGLAETGSGKTAAFALPILQSLLENPQRY 88 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA Q+ ++E L A GV AV +GG+ + + L HI++ Sbjct: 89 ------FALILTPTRELAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAKKPHILI 142 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P++R +FSAT Sbjct: 143 ATPGRLLDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILKVIPRERHTFLFSAT 202 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + +D V+V ++++ + + + + + +D +V+IL + + Sbjct: 203 MTKKVKKLQRACLRDPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEMAGNSFM 262 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FCST + R +L V L G++SQ +R AL + + I+TDVA+RG+ Sbjct: 263 IFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALTKFKAKNRSILISTDVASRGL 322 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++ + Q + +R E+L Sbjct: 323 DIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQLI 377 >gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella bacilliformis KC583] gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain protein [Bartonella bacilliformis KC583] Length = 462 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 197/369 (53%), Gaps = 23/369 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +Q + L+ KDVL AQTG+GKT +F L + + L E R + A Sbjct: 19 KAVQLAGYTAPTPIQSETIPHVLQHKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-AKA 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV + + VA+ IGGVS + R L+ GA +++ TP Sbjct: 76 RMPRTLILEPTRELAAQVKENFDKYGINHRLNVALLIGGVSFDHQDRKLERGADVLIATP 135 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L + ++ +V+DEAD MLD+GF DIE I +P R+ L FSAT++P Sbjct: 136 GRLLDHFERGTLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPE 195 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDY------------RAVLVALSDRDNAIVNILR 240 I L + + V V I E+ I RAVL L +N + Sbjct: 196 IIKLTEQFLHSPVCVEITKESSTARTITQRLVKSGSKAWHKRAVLRKLIHDENKEL---- 251 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KNAIVFC+ + +S + L ++ F V L G++ Q R N L ++ + + +A Sbjct: 252 ----KNAIVFCNRKKDISELFRSLVKYNFSVGVLHGDMDQHSRMNTLADFKENKLTLLVA 307 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 +DVAARG+D+PD+ V + ++ ++ E+ +HR GRTGRA R G + ++ +N Q+ + Sbjct: 308 SDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKNDQKYISAIE 367 Query: 361 REANVSVVW 369 + + ++ W Sbjct: 368 KISKENIEW 376 >gi|254425310|ref|ZP_05039028.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335] gi|196192799|gb|EDX87763.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335] Length = 471 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 207/376 (55%), Gaps = 9/376 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L++ G+ T++Q + L DV+ AQTG+GKT AF L + ++ +PA Sbjct: 16 EHLTQIGFTEPTAIQIQAIPQLLSGHDVVGLAQTGTGKTAAFSLPML-------EQVNPA 68 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + + AL + PTRELA+QV + +E + V GG S+ R+ + L+ G+ IVVGT Sbjct: 69 NRYVQALVLTPTRELAMQVSQAMESFNTDKRLYVTSVYGGQSIDRQIQRLKRGSQIVVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D I GL + L +VLDEADEML++GF D+E IL +P +R+ FSAT+ P Sbjct: 129 PGRIIDLIERGGLVLDRLSIMVLDEADEMLNMGFIQDVETILSHTPDERQTAFFSATMEP 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250 AI L+ + K V V++ ++ + I A V + A++ IL ++AI+F Sbjct: 189 AIQKLSTRFLKSPVTVSVEAKTSSTARIKQIAYTVPPGWSKPRALMPILEMEDPESAIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR + + T+ L G+L+Q +R LQ + + R +ATD+AARGI + Sbjct: 249 VRTRRTAAELTRQLQAAGHSADEYHGDLTQPQRERLLQRFKQRQVRWVVATDIAARGIHV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 DL VI+ EL N ++ +HR GRTGRAG++G +V ++ + + R+ + SV + Sbjct: 309 DDLSHVINYELPDNLDSYVHRIGRTGRAGKEGRAVSIVMTLEKYKLSRIEKRFKKSVEYC 368 Query: 371 PAPSVEAIRERDAQRI 386 P+ I R +++ Sbjct: 369 KIPTQAQIAARHLEKL 384 >gi|114797080|ref|YP_759424.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444] gi|114737254|gb|ABI75379.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444] Length = 536 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/342 (37%), Positives = 180/342 (52%), Gaps = 8/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E GY T +Q + L DV AQTG+GKT AF L + L R Sbjct: 15 ILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRAR-- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P L + PTRELA QV E + +A+ IGGVS + LQ G +++ Sbjct: 73 -ARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIA 131 Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D RGK L + ++ +++DEAD MLD+GF DIE I P R+ L+FSAT Sbjct: 132 TPGRLMDQFDRGKLLMMG-VETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFSATF 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKN 246 I LAK +QKD ++ + + I V + +D R A+ ++ KN Sbjct: 191 PTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEATNVKN 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVFC+ + V L +H + G+L Q RS LQ RDG+ ++ +A+DVAAR Sbjct: 251 GIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+PD+ V + E+ +HR GRTGRAGR G S V+ Sbjct: 311 GLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVV 352 >gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 382 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 187/347 (53%), Gaps = 3/347 (0%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E NI I +AL GY T +QE + L+ +D+L AQTG+GKT AF + L Sbjct: 1 MKFEELNIITPIMKALKAEGYEAPTPIQERAIPAVLKGRDLLGCAQTGTGKTAAFSIPLL 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L E AL +APTRELA+Q G L G+ V GGVS + R Sbjct: 61 QILSRERINERAPRTIRALILAPTRELALQTGENLRAYGKYLGIKHTVIFGGVSQDAQTR 120 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 ++ G I+V TPGRL D + G+G + + H+K +VLDEAD MLD+GF D++ IL P Sbjct: 121 AMKAGVDILVATPGRLLD-LMGQGYVRLDHIKLLVLDEADRMLDMGFAHDMKRILAKLPA 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 ++ L+FSAT+ P + +A + V++ +A + ID V S + ++ + Sbjct: 180 AKQTLLFSATMPPEMKAMAGAILSNPVKIEVAPVSSTADTIDQSVYFVEKSGKKALLIEL 239 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 LR +A+VF T+ + L + + A+ G SQ R AL + R RV Sbjct: 240 LRNQSVDSALVFTRTKHGADNVVRALEKARIKAQAIHGNKSQAARQTALNNFKAKRTRVL 299 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATD+AARGID+ +L VI+ +L + PE +HR GRTGRAG G ++ Sbjct: 300 VATDIAARGIDVQELSHVINFDLPNIPETYVHRIGRTGRAGMGGTAL 346 >gi|229011722|ref|ZP_04168904.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048] gi|229167295|ref|ZP_04295034.1| ATP-dependent RNA helicase [Bacillus cereus AH621] gi|228616171|gb|EEK73257.1| ATP-dependent RNA helicase [Bacillus cereus AH621] gi|228749519|gb|EEL99362.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048] Length = 450 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 196/355 (55%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y ++ + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ VS+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|315637556|ref|ZP_07892763.1| ATP-independent RNA helicase DbpA [Arcobacter butzleri JV22] gi|315478147|gb|EFU68873.1| ATP-independent RNA helicase DbpA [Arcobacter butzleri JV22] Length = 454 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 205/368 (55%), Gaps = 11/368 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + L Y LT +QE + L+ KD++ A+TGSGKTVAF L + + L A+ Sbjct: 7 NLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIVNKLKAK 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + AL +APTRELA Q+ + L L + V+ +C GGV + LQ+ Sbjct: 67 EFKIQ------ALILAPTRELANQIAQNLRNLSRHIHNVKVLTLC-GGVPFKPQVVSLQH 119 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 AHIVV TPGR+ HI+ K +N+ ++ VLDEAD+MLD+GF DDI I+++ PK R+ + Sbjct: 120 NAHIVVATPGRVLKHIKEKNINLENINTFVLDEADKMLDMGFYDDIMEIIENLPKNRQTM 179 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT I A N K+ + I+ E + I+ + V S++ I ++ ++ Sbjct: 180 LFSATYEKNIEIFASNILKNPIYKEISDE--KEILINQKFYEVTPSEKTALIPALISHNQ 237 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AK ++FC+ + + + L + ++ L +L Q++R + + + + IATDV Sbjct: 238 AKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPILIATDV 297 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 A+RG+ + D++LVI+ +LS + + HR GRT RAG+ G+++ + +N + E + + Sbjct: 298 ASRGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEIIKEKF 357 Query: 364 NVSVVWEP 371 N + P Sbjct: 358 NNIKIENP 365 >gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia J2315] gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia J2315] Length = 514 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 142/400 (35%), Positives = 213/400 (53%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L T Sbjct: 45 PEIV-SALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIETFAQLQK 103 Query: 65 -------------ENDRFS----PASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 + DR + P + P L + PTRELA+QV G+ L+ L Sbjct: 104 TQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 163 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF +DIE I+D++P R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 218 LDMGFIEDIETIVDATPDTRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 275 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ F+ AL G+ Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFRE---ANVSVVWEP 371 AGR G++V ++ Q +R ER R NV +EP Sbjct: 396 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 435 >gi|168009544|ref|XP_001757465.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691159|gb|EDQ77522.1| predicted protein [Physcomitrella patens subsp. patens] Length = 452 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 193/342 (56%), Gaps = 9/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + EA G+ T +Q + L+ D++ AQTGSGKT F L + LL EN + Sbjct: 30 LAEACDALGWKAPTQIQVDAVPVALKGHDIIGLAQTGSGKTATFALPILQALL-ENPQ-- 86 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 PL A ++PTRELA+Q+ + E L + G+ AV +GG+ + + L H+VV Sbjct: 87 ----PLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGIDMMAQSVALAKRPHVVV 142 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 GTPGRL DH+ KG ++ +K +VLDEAD +L++ F +I+ IL PK+RR +FSAT Sbjct: 143 GTPGRLVDHLTNTKGFSLRTIKYLVLDEADRLLNMDFEQEIDEILKVIPKERRTYLFSAT 202 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + K+ V+V ++++ + + + +D +V IL A+ Sbjct: 203 MTTKVAKLQRACLKNPVKVEVSAKYSTVDSLKQEYLFIPAKYKDCYLVYILNELAGNTAM 262 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T + + + VL F + +SG++SQ +R AL + G + I TDVA+RG+ Sbjct: 263 VFTRTCEATRKLSLVLRNLGFVAIPISGQMSQPKRLGALAKFKAGDCNILICTDVASRGL 322 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 D+P + LVI+ ++ +N ++ +HR GRT RAGR G ++ ++ Q Sbjct: 323 DIPSVNLVINYDIPTNSKDYIHRVGRTARAGRSGRAISMVCQ 364 >gi|239918016|ref|YP_002957574.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665] gi|239839223|gb|ACS31020.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665] Length = 611 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 184/348 (52%), Gaps = 10/348 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69 I EAL +G V+ +Q L L D++ A+TG+GKT+ FG+ + + Sbjct: 48 IVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAIGPGEPGW 107 Query: 70 ------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 A AP AL +APTRELAVQV +L A+ + +A GG + + +LQ Sbjct: 108 DGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEELQR 167 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGRL D +R + L + + VVLDEADEMLDLGF D+E +L + P R+ + Sbjct: 168 GVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVRQTM 227 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAIVNILR 240 +FSAT+ + +A+ Y + A E DI D+D + L+ Sbjct: 228 LFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELVARALQ 287 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G I+F T+ + +R L F AL G+L Q R AL+ R+G+ + +A Sbjct: 288 AEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDILVA 347 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ D+ V + + + + +HR GRTGRAG KG++V ++ Sbjct: 348 TDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395 >gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum marinum IMCC1322] Length = 464 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 116/332 (34%), Positives = 183/332 (55%), Gaps = 3/332 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A++E GY + T +QE + L +D+L SAQTG+GKT +F L + L + + Sbjct: 12 LSQAVAELGYESPTPIQEKSIPIILMGRDILGSAQTGTGKTASFTLPMIDILASGRAK-- 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P +L +APTRELA QV E + +A+ IGGVS + L G +++ Sbjct: 70 -ARMPRSLILAPTRELAAQVAESFEKFSTHHKLNMALLIGGVSFSDQNTALDKGVDVLIA 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH + ++ +K +V+DEAD MLD+GF D+E I+ P R+ L FSAT+S Sbjct: 129 TPGRLLDHFERGKVMLNDVKVLVIDEADRMLDMGFIPDVERIVSLLPPLRQTLFFSATLS 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I ++ + + + +A + + + + ++LR KNA++F Sbjct: 189 DDIHKISHKFVSNPKIIEVAPPASTADTVAQHLQWTDVKSKRAVLRDLLRVETVKNAVIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + +S K L +H F VA+ G+++Q R AL + G + IA+DVAARG+D+ Sbjct: 249 CNRKRDISTLVKSLTKHEFSAVAMHGDMTQSARLEALDKFKKGEVPLLIASDVAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 L V + ++ N E+ +HR GRTGRAG+ G Sbjct: 309 AGLSHVFNFDVPMNAEDYVHRIGRTGRAGKSG 340 >gi|168207624|ref|ZP_02633629.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str. JGS1987] gi|170661029|gb|EDT13712.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str. JGS1987] Length = 478 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/354 (34%), Positives = 198/354 (55%), Gaps = 6/354 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +AL+ GY N + VQEA + L+ +D++V +QTGSGKT +FG+ + + E Sbjct: 7 NLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCEKINIE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L + PTRELA+QV EL + V AV G + + R+L+ Sbjct: 67 EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAVIFGKQPFNEQIRELKQRV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L++S + VV+DEAD+ML +GF D I+ IL + +F Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I + + Y ++ + + + S+ I+ A+ + ++ A+ L + + Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCLYAYHPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AIVFC+TR V K+L + L G++ Q++R ++ RD +V + TD+AA Sbjct: 241 SAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RGI + +ELVI+ E+ E+ +HR GRTGRAGR+G ++ + ++ E + Sbjct: 301 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354 >gi|229065471|ref|ZP_04200719.1| ATP-dependent RNA helicase [Bacillus cereus AH603] gi|228715789|gb|EEL67561.1| ATP-dependent RNA helicase [Bacillus cereus AH603] Length = 450 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 196/355 (55%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y ++ + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ VS+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus JV-V01] gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus MV-1A-US] gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1] gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus JV-V01] gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus MV-1A-US] gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1] Length = 495 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L+ KDV+ AQTG+GKT AFGL + + + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQMIDKKE------ 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131 A A+ I PTRELA+Q EL L V V GG + R+ R L++ I+VGT Sbjct: 68 KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +N+ +KAVVLDEADEMLD+GF DIE IL + +++ L+FSAT+ Sbjct: 128 PGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + V I ++ I+ V S++ + + ++ G A+VF Sbjct: 188 PILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R + L+ R+G+ + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349 >gi|28211174|ref|NP_782118.1| ATP-dependent RNA helicase [Clostridium tetani E88] gi|28203614|gb|AAO36055.1| ATP-dependent RNA helicase [Clostridium tetani E88] Length = 481 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 112/357 (31%), Positives = 195/357 (54%), Gaps = 12/357 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I EAL + GY N + VQ+ ++ ++ KD++V ++TGSGKT +FG+ + + E Sbjct: 11 ISEDILEALLKLGYKNPSKVQQKVIPVAIKNKDIIVKSKTGSGKTASFGIPICENVNLEE 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTREL +QV +++ + + + G + +L+ H Sbjct: 71 RK------PQALVLTPTRELCIQVKEDIKNIGRFKRIKCSAIFGKQPFKTQALELKQRTH 124 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR DHI +++ +K ++DE DEM ++GF D +E I+ PKKR ++FS Sbjct: 125 VVVGTPGRTLDHIERGTIDLDKIKYFIVDEGDEMFNMGFIDQVESIMRKLPKKRVNMLFS 184 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I L + Y K + + + E I + + ++ + + IL + Sbjct: 185 ATIPEKIEKLCEKYMKSPIMIEVNPEEFTEEKIQHIYYEIEDKNKFDLLNKILITENPDS 244 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +I+FC T+ +V++ K++ + AL G + Q +R + + + G +ATD+AAR Sbjct: 245 SIIFCRTQENVNKLAKLMENKDYPCKALHGGMMQDKRIDIMNRFKRGEFMFLVATDLAAR 304 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFRE 362 GID+ ++ +I+ ++ EN +HR+GRTGRAGR+G ++ V P +R F++ Sbjct: 305 GIDVENVTHIINYDIPMEKENYVHRTGRTGRAGREGCAISLVTPYE-----DRFFKQ 356 >gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis MED217] gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis MED217] Length = 442 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 188/335 (56%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+++GY + T +Q + L+ KD+L SAQTG+GKT AF + + + + Sbjct: 12 ILKALADKGYTHPTPIQRQAIPILLKGKDLLGSAQTGTGKTAAFTIPILQQIYDKVGSGK 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA+Q+ ++ TG+ V GGV + + ++ G ++ Sbjct: 72 GKRKLKALIVTPTRELAIQIEDNVKEYSKYTGIQSTVIFGGVKQASQVQAMRKGVDVLTA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ +++ ++ +VLDEAD+MLD+GF DI+ IL P KR+ L FSAT+ Sbjct: 132 TPGRLLDLVKQGFIDLGTIEYLVLDEADQMLDMGFIHDIKKILKLVPHKRQSLFFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L+K D +V+IA E +D V+ ++ + +++ + +VF Sbjct: 192 KEIIDLSKLILGDFEKVSIAPEKPTAERVDQAVYFVSKKNKAKLLKHLIDTEKPETLLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ KVL + Q A+ G SQ R AL ++G+ V +ATD+AARGID+ Sbjct: 252 SRTKHGANKIVKVLDKAGIQAAAIHGNKSQAARQKALNAFKEGKLHVLVATDIAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +LELVI +L + PE +HR GRTGRA G+++ Sbjct: 312 SELELVIQYDLPNVPETYVHRIGRTGRAKASGIAI 346 >gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio vulgaris DP4] gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4] Length = 532 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 162/520 (31%), Positives = 256/520 (49%), Gaps = 37/520 (7%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F+++P + + +A+ E G+ + +Q + L +DV+ AQTG+GKT AFGL L Sbjct: 7 FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120 + A + AL + PTRELA+QV L L GV + GG + + Sbjct: 67 IDAADRSVQ------ALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GA +VVGTPGR+ DHI L + ++ VLDEADEMLD+GFR+DIE IL P+ Sbjct: 121 LRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWV 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + FSAT+ I LA+ + ++ + + ++ + V R +A+ I Sbjct: 181 QSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFD 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + + AIVF +T+ V L + AL G+L+Q +R + R G V +A Sbjct: 241 AYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+ D++ VI+ +L ++PE +HR GRTGRAGR G + + + Sbjct: 301 TDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGQAFSFAAGRDVYKLRDIQ 360 Query: 361 REANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAK-HDPEKIA 417 R + P+ +A R R Q + + L S + +V+ L+A+ DP ++A Sbjct: 361 RVTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPTQLA 420 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL--SVGS 475 A LR ++ RDR + G + + G+ L +VG Sbjct: 421 ATLLR----------------MIMQRDR-------IDLPGARQTDDIGTGRVRLFFNVGR 457 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + + R L+ + +GI+ +SIG+I + +FVEV A Sbjct: 458 RMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDA 497 >gi|327392908|dbj|BAK10330.1| ATP-independent RNA helicase DbpA [Pantoea ananatis AJ13355] Length = 439 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 203/360 (56%), Gaps = 10/360 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY ++T VQ A L L +DV A+TGSGKT AFG+ L + ++ F AL Sbjct: 2 GYTSMTPVQAATLPAILDGRDVRAQAKTGSGKTAAFGIGLLQHI--DSAHFQTQ----AL 55 Query: 79 AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 + PTRELA QV L L + + ++ +C GG + +R L + HIVVGTPGR+ Sbjct: 56 ILCPTRELADQVSNVLRQLARFTRNIKILTLC-GGQPMSAQRDSLVHAPHIVVGTPGRIL 114 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 DHI+ + L + L+ +VLDEAD ML++GFRDD+E I+ ++P R+ L+FSAT I L Sbjct: 115 DHIKRETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQTLLFSATWPEGIAAL 174 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 ++ +Q++A+ V + E + I+ + + + ++ + ++++L + +VFC+T+ Sbjct: 175 SQRFQREALSV-VTEEVSELPAIEQQFIEASHGEKLSLLISLLSERQPSSCVVFCNTKRE 233 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 L + L G+L Q++R L +G RV +ATDVAARG+D+ L LV Sbjct: 234 CDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKLLSLV 293 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376 ++ +L+ +PE LHR GRT RAG +G +V + + RA L + W A S++ Sbjct: 294 VNYQLAWDPEVHLHRIGRTARAGEQGAAVSFVAADEMARAHALEDFLQQKLPWVAASSLK 353 >gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC 43183] gi|167700298|gb|EDS16877.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC 43183] Length = 372 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 189/345 (54%), Gaps = 3/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY N T +Q + L KD+L AQTG+GKT AF + + L Sbjct: 7 NITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQHLQVL 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R A L + PTRELA+Q+ ++ T V V GGV+ + L G Sbjct: 67 KNRDKSIKA---LILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHKGV 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + +++ +++ VLDEAD MLD+GF DI+ +L PK+++ L F Sbjct: 124 DILVATPGRLLDLMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLFF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L + K V++ I ++ I+ V ++ +++IL + Sbjct: 184 SATMPDTIIALTNSLLKQPVKITITPKSSTVDTIEQTIYFVEKKEKSKLLISILHKTEGQ 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + R +VL++ A+ G SQ R +AL+ + G+ RV IATD+AA Sbjct: 244 SVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIATDIAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RGID+ +L LVI+ +L PE +HR GRTGRAG G ++ Q Sbjct: 304 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQ 348 >gi|163868127|ref|YP_001609331.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476] gi|161017778|emb|CAK01336.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476] Length = 467 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/360 (34%), Positives = 194/360 (53%), Gaps = 7/360 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T +Q + L+ KDVL AQTG+GKT +F L + + L R A Sbjct: 20 AVKSAGYTVPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLTLLEKGRAR---AR 76 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRE+A QV + + VA+ IGGVS + R L+ GA +++ TPG Sbjct: 77 MPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLERGADVLIATPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L + ++ +V+DEAD MLD+GF DIE I +P R+ L FSAT++P I Sbjct: 137 RLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPEI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGAK--NAIV 249 T L K + V V + + + + R V D V +++ G+K NAI+ Sbjct: 197 TKLTKQFLHSPVSVEVTKASSTATTVTQRLVKSGNKSWDKRAVLRELIQNEGSKLQNAII 256 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+ + +S + L +H F V AL G++ Q R N L ++ + + +A+DVAARG+D Sbjct: 257 FCNRKRDISELFRSLIKHNFNVGALHGDMDQYSRMNTLADFKNNKLTLLVASDVAARGLD 316 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 +P + V + ++ ++ E+ +HR GRTGRA R G + ++ + Q+ + ++ + W Sbjct: 317 IPAVSHVFNYDVPTHAEDYIHRIGRTGRANRLGKAFTIVTKADQKYINAIEEMSHEKIEW 376 >gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium smegmatis str. MC2 155] gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium smegmatis str. MC2 155] Length = 581 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 140/392 (35%), Positives = 218/392 (55%), Gaps = 18/392 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ +A+++ GY + +++Q A + P L DV+ AQTG+GKT AF + + S + + Sbjct: 30 PAVL-QAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPILSKI--DTS 86 Query: 68 RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL +APTRELA+QV + V V GG S + L+ GA Sbjct: 87 RRDTQ----ALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLRRGAQ 142 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L++S L +VLDEADEML +GF +++E IL +P+ +++ +FS Sbjct: 143 VVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVALFS 202 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ AI + Y D V V + ++ +I R + VA + +A+ IL Sbjct: 203 ATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEVEEGDA 262 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + L F A++G+++Q +R + ++DG + IATDVAAR Sbjct: 263 MIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIATDVAAR 322 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANV 365 G+D+ + VI+ ++ + E+ +HR GRTGRAGR G +V FV P+ +R + +A Sbjct: 323 GLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPR--ERHLLKSIEKATR 380 Query: 366 SVVWEPA-PSVEAIRERDAQRILQDPLFLDSI 396 S + E PSVE + +AQR+ + F DSI Sbjct: 381 SKLIEAELPSVEDV---NAQRVAK---FRDSI 406 >gi|313202537|ref|YP_004041194.1| dead/deah box helicase domain protein [Paludibacter propionicigenes WB4] gi|312441853|gb|ADQ78209.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes WB4] Length = 408 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 202/383 (52%), Gaps = 15/383 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F+ +P + + L + T VQ + L+++DV+ AQTG+GKT AF L L Sbjct: 3 FDELPLCDAVLDGLQAMNFKEATPVQAETIPVILQKRDVIACAQTGTGKTAAFILPLLHN 62 Query: 62 LLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHR 116 L AE P +A A+ +APTRELA Q+ +++E T GG + Sbjct: 63 LQAE-----PLAADKVNAIIMAPTRELAQQIDQQMEGFSYFTSFSSVAVYGGNDASAWDT 117 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 +RR LQNGA +V+ TPGRL HI ++ SH+K +LDEAD MLD+GF DDI +++ Sbjct: 118 QRRGLQNGADVVIATPGRLLSHINLYDIDFSHVKYFILDEADRMLDMGFFDDIMQVVNRL 177 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 PK R+ +MFSAT+ P I LAK + V V IA +R I A + + + I Sbjct: 178 PKDRQTIMFSATMPPKIRLLAKTILNNPVEVKIAV-SRPPESIMQTAYICYEAQKHGIIR 236 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 ++ A I+F ++ V K + V + +L Q +R + + ++ R Sbjct: 237 HLFAEQEATKVIIFSGSKLKVKELFKTFRQMGLSVGEMHSDLDQAQRDHVMHEFKNNRVS 296 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 + +ATD+ +RGID+ D+ LVI+ ++ + E+ +HR GRT RA KGMS+ + + Q + Sbjct: 297 ILVATDIVSRGIDIDDISLVINYDVPHDAEDYVHRIGRTARASAKGMSITFVSEEEQYKF 356 Query: 357 ERL--FREANVSVVWEPAPSVEA 377 +++ F E ++ + P EA Sbjct: 357 KQIEDFLEKDIYKIPMPVELGEA 379 >gi|241762057|ref|ZP_04760141.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373523|gb|EER63110.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 506 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/381 (33%), Positives = 210/381 (55%), Gaps = 13/381 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY T VQ + L +D++ AQTG+GKT +F L + L R A Sbjct: 28 QAVAELGYEEPTPVQATAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGRCR---A 84 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L + PTRELA QV E + +++ IGGV + ++ L+ G +++ TP Sbjct: 85 RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATP 144 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL D RGK L +S + +V+DEAD MLD+GF DIE I P R+ L+FSAT+ P Sbjct: 145 GRLLDLFERGKIL-LSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP 203 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI LA + + ++ I+ ++ ID R + V+ + + ++LR AI+FC Sbjct: 204 AIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIFC 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + + +V + L + F V + G++SQ ER + L+ ++G+ V +A+D+AARG+D+ Sbjct: 264 NRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDVK 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLF-----REA 363 + V + ++ ++P++ +HR GRTGR G G ++ FV P + + A E+L R Sbjct: 324 GISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAIAAIEKLMGVEIPRLG 383 Query: 364 NVSVVWEPAPSVEAIRERDAQ 384 N P+ S EA+ + A+ Sbjct: 384 NRKKNAHPSKSEEAVSPKQAK 404 >gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC 17982] gi|153799192|gb|EDN81612.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC 17982] Length = 581 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 191/349 (54%), Gaps = 15/349 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---- 66 I +AL ++G + +Q L P L D++ A+TG+GKT+ FG+ + ++A + Sbjct: 74 IVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGY 133 Query: 67 -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D +P + P AL I PTREL QV ++L + GGV+ + L+ GA Sbjct: 134 EDLLNP-NKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQIEALERGA 192 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGRL D +R L++S ++ VVLDEADEMLDLGF D+E +L P+ R ++F Sbjct: 193 DIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVPENRHTMLF 252 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239 SAT+ + LA+ + + + Q+ ++ YR V ++ + IL Sbjct: 253 SATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYR---VHAMNKVEVVARIL 309 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G ++FC T+ + +R + L F V +L G+L Q R AL+ R+G+ V + Sbjct: 310 QAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNGKVDVLV 369 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ATDVAARGID+ D+ VI+ + + + +HR GRTGRAG G +V + Sbjct: 370 ATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFV 418 >gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein [Desulfurispirillum indicum S5] gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum S5] Length = 457 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 185/335 (55%), Gaps = 2/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T VQ+ + L+ +D+ AQTG+GKT F L + L E Sbjct: 15 AVAAEGYTQPTPVQQQAIPAILQGRDIQAGAQTGTGKTAGFTLPMLEIL--ERQAIRGRR 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV + + AV GGV++ + +L+ G IVV TPG Sbjct: 73 HVRALILTPTRELAAQVEESVRTYGKHLSLKSAVIFGGVAMGPQLANLRRGVDIVVATPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ K +++S ++ +VLDEAD MLD+GF DI +L PK+R+ L+FSAT S I Sbjct: 133 RLLDHVQQKSIDLSKVEFLVLDEADRMLDMGFIHDIRKVLALLPKERQNLLFSATFSREI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 T LA ++ KD V+V +A N +D LV + + ++ + +VF T Sbjct: 193 TELASSFMKDPVQVEVARRNTAAETVDQVVHLVDRERKRELLSKLISEGKWQQVLVFTRT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + A+ G SQ R+ AL + G+ RV +ATD+AARG+D+ +L Sbjct: 253 KHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKKGQVRVLVATDIAARGLDIDEL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G + ++ Sbjct: 313 PHVVNFELPNVPEDYVHRIGRTGRAGNCGKACSLV 347 >gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens QYMF] Length = 484 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 114/368 (30%), Positives = 193/368 (52%), Gaps = 6/368 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++S + + T VQ+ ++ L KD++V +QTGSGKT AF + + + + ++ Sbjct: 17 KSISMLNFESPTKVQQQVIPAILEHKDIIVKSQTGSGKTAAFAIPICQLVDWDENK---- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTRELA+QV ++ + + VA G + + ++L+ H+VVGTP Sbjct: 73 --PQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPFYHQEKELKQKTHVVVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ + S +K +V+DEADEM ++GF D IE I+ KKR ++ SAT+ A Sbjct: 131 GRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTMLLSATMPSA 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I TL+ Y KD + I E+ I V D+ + +I + I+FC+ Sbjct: 191 IETLSNRYMKDPIHAEIEEESSAVDRISQERYTVEYRDKMKLLSDITIVENPDSCIIFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V L + + G + Q++R + + G R +ATDVAARGID+ + Sbjct: 251 TKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNEFKQGYFRYLVATDVAARGIDIDN 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LVI+ ++ + E+ +HR GRTGR R+G ++ + Q + + + R + Sbjct: 311 ISLVINYDIPQDKESYVHRIGRTGRISREGRAITFVTQYEDKFLKDIHRYIGKEIPLMQR 370 Query: 373 PSVEAIRE 380 P +E + + Sbjct: 371 PEIETVND 378 >gi|262047224|ref|ZP_06020182.1| helicase [Lactobacillus crispatus MV-3A-US] gi|260572469|gb|EEX29031.1| helicase [Lactobacillus crispatus MV-3A-US] Length = 494 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L+ KDV+ AQTG+GKT AFGL + + + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQMIDKKE------ 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131 A A+ I PTRELA+Q EL L V V GG + R+ R L++ I+VGT Sbjct: 68 KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +N+ +KAVVLDEADEMLD+GF DIE IL + +++ L+FSAT+ Sbjct: 128 PGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + V I ++ I+ V S++ + + ++ G A+VF Sbjct: 188 PILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R + L+ R+G+ + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349 >gi|91218309|ref|ZP_01255254.1| superfamily II DNA and RNA helicases [Psychroflexus torquis ATCC 700755] gi|91183518|gb|EAS69916.1| superfamily II DNA and RNA helicases [Psychroflexus torquis ATCC 700755] Length = 443 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 136/394 (34%), Positives = 214/394 (54%), Gaps = 30/394 (7%) Query: 11 IGEALSERGYVNL-----TSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64 I E L +R V+L T VQE + L + +D++V ++TGSGKT AFGL L + Sbjct: 10 INEHL-QRSLVDLQISVPTEVQEKTIPVVLNQNEDLVVLSKTGSGKTAAFGLPLLQLIDT 68 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRD 120 EN L +APTREL Q+ L W + +A GG + + + Sbjct: 69 ENTSIQ------TLILAPTRELGQQIYNNLISFASW---SDQIHIASLCGGTPIKPQIEN 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L + H+VV TPGRL D I+ + +++ HLK VVLDEADEML + +++ I+ + PK R Sbjct: 120 LNSTTHLVVATPGRLLDLIKREAIDLKHLKYVVLDEADEMLS-ALKFEVDTIIKAIPKTR 178 Query: 181 RMLMFSATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R L+F+AT+S + L +NY KD V + + + H ID+ V+V ++ + +++ L Sbjct: 179 RTLLFTATMSGTVKQLVQNYMSKDLVTIEVDTTTLGHQGIDHHYVVVEPIEKLDVLLHFL 238 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G + I+FC T+A+V++ K LA + F A+ G L+Q R + R+G + + Sbjct: 239 NSKGGERGIIFCKTKAAVNKLAKKLAINKFSSGAIHGSLTQGIRDRIMGQFREGHIDILV 298 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATD+AARGID+ ++ V++ L E +HRSGRT RAG KG+S+ ++ + AE Sbjct: 299 ATDLAARGIDVKEVSYVVNYHLPDTYEAYVHRSGRTARAGAKGLSLTILQH--EEIAEIT 356 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFL 393 E + +V+ ++ DAQ I ++ L Sbjct: 357 DFENELGIVFHK------FKKADAQSIEENNALL 384 >gi|242033243|ref|XP_002464016.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor] gi|241917870|gb|EER91014.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor] Length = 750 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 192/358 (53%), Gaps = 20/358 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71 A+ + GY + +Q A + L+++DV+ A+TGSGKT AF L + S T L + Sbjct: 343 AIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENE 402 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G IV+ T Sbjct: 403 AEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIAT 462 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179 PGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 463 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 522 Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 R MFSAT+ PA+ LA+ Y ++ V V I + + I ++V S++ Sbjct: 523 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESEKMPR 582 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + IL G K AIVFC+T+ + K L + F+V L G SQ +R +L R+ R Sbjct: 583 LQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKSQDQREISLDGFRNRR 642 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 V +ATDVA RGID+PD+ VI+ E+ S+ + HR GRTGRAG+KG++ F+ +N Sbjct: 643 FNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAGKKGVATSFLTLEN 700 >gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh 114] gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh 114] Length = 505 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/385 (33%), Positives = 205/385 (53%), Gaps = 15/385 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + P L +DVL AQTG+GKT +F L + TLLA Sbjct: 31 PKVL-KAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 88 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 89 --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLIDKGVDV 146 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 147 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 206 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + R+ +A + I+ ++ S +D + ++ Sbjct: 207 TMAPEIERITNTFLSAPERIEVARQATTSETIEQGVLMFKASRKDREGTEKRKVLRALID 266 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAIVFC+ + V K L ++ + + G+L Q +R+ L RDG + Sbjct: 267 AEGEKCTNAIVFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDGSLKFL 326 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 IA+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGR G ++ + +R E Sbjct: 327 IASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPRDERNLED 386 Query: 359 LFR--EANVSVVWEPAPSVEAIRER 381 + R + + + P + EA +E+ Sbjct: 387 IERLVQREIPRLDNPLGTKEAPKEK 411 >gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 518 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 185/333 (55%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL ++GY+ + +QE + L +D+L AQTG+GKT AF L + L+ Sbjct: 14 KALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPIIQNLMERPKNRQKK 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA+Q+ +E A T + AV GGVS + + L+ G I+V TP Sbjct: 74 KPVRALILTPTRELALQIHENIEEYGAGTPINSAVIFGGVSAKPQIQSLRRGIDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I +++S ++ VLDEAD MLD+GF D++ ++ PKKR+ L+FSAT+ Sbjct: 134 GRLLDLIGQHEIDLSFVEIFVLDEADRMLDMGFIHDVKRVITLLPKKRQTLLFSATMPDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V+V + + I+ V +++ +V++L + + +VF Sbjct: 194 IQALAAKLLHNPVKVEVTPVSSTVDLIETSLYYVDKANKWPLLVHLLEHEDVSSTLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R K L + A+ G+ SQ R AL + GR RV +ATD+AARGID+ + Sbjct: 254 TKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSGRLRVLVATDIAARGIDIEE 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L VI+ +L + PE +HR GRTGRAG G ++ Sbjct: 314 LSCVINFDLPNVPETYVHRIGRTGRAGLGGRAI 346 >gi|226490952|ref|NP_001152536.1| ATP-dependent RNA helicase DDX23 [Zea mays] gi|195657271|gb|ACG48103.1| ATP-dependent RNA helicase DDX23 [Zea mays] gi|224030151|gb|ACN34151.1| unknown [Zea mays] Length = 758 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 192/358 (53%), Gaps = 20/358 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71 A+ + GY + +Q A + L+++DV+ A+TGSGKT AF L + S T L + Sbjct: 351 AIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENE 410 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G IV+ T Sbjct: 411 AEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIAT 470 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179 PGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 471 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 530 Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 R MFSAT+ PA+ LA+ Y ++ V V I + + I ++V S++ Sbjct: 531 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESEKMPR 590 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + IL G K AIVFC+T+ + K L + F+V L G SQ +R +L R+ R Sbjct: 591 LQKILTDLGDKTAIVFCNTKKTADMRAKDLDKSGFRVTTLHGGKSQDQREISLDGFRNRR 650 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 V +ATDVA RGID+PD+ VI+ E+ S+ + HR GRTGRAG+KG++ F+ +N Sbjct: 651 FNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAGKKGVATSFLTLEN 708 >gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida subsp. salmonicida A449] Length = 417 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 186/335 (55%), Gaps = 5/335 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + LSE GY T +Q + L +D++ AQTG+GKT AF L L L+ S Sbjct: 17 QTLSELGYAAPTPIQARAIPVILTGRDLMAGAQTGTGKTAAFVLPLLEQLMQHPA--SDT 74 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + P+ AL + PTRELAVQV + TG+ A+ GGVS+ + LQ G +++ T Sbjct: 75 ARPIRALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQVEALQAGVDLLIAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R L++ HL +V DEAD MLD+GF D+I+ +L P R+ L+FSAT Sbjct: 135 PGRLLDHLRQGALSLEHLSHLVFDEADRMLDMGFMDEIKALLKQIPADRQTLLFSATCDD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250 + L++ +D + +A N ++++ R V +R A+V ++++ G ++F Sbjct: 195 NLFALSRVLLRDPELIEVAPRNTTAAEVEQRVYAVD-GERKVALVEHLIKVKGWAPVLIF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR + + L + +A G+LSQ R L R G + +ATDVAARG+D+ Sbjct: 254 SRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLAFRAGTLQALVATDVAARGLDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DL VI+ E E+ +HR GRTGRAG KG+++ Sbjct: 314 LDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAI 348 >gi|289705155|ref|ZP_06501559.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus SK58] gi|289558183|gb|EFD51470.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus SK58] Length = 470 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 187/351 (53%), Gaps = 11/351 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ EAL +G V+ +Q L L D++ A+TG+GKT+ FG+ + + Sbjct: 46 PKIV-EALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAIGPGE 104 Query: 68 RF-------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 A AP AL +APTRELAVQV +L A+ + +A GG + + + Sbjct: 105 PGWDALEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEE 164 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 LQ G IVVGTPGRL D +R + L + + VVLDEADEMLDLGF D+E +L + P R Sbjct: 165 LQRGIEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVR 224 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAIVN 237 + ++FSAT+ + +A+ Y + A E DI D+D + Sbjct: 225 QTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELVAR 284 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L+ G I+F T+ + +R L F AL G+L Q R AL+ R+G+ + Sbjct: 285 ALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDI 344 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARGID+ D+ V + + + + +HR GRTGRAG KG++V ++ Sbjct: 345 LVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395 >gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b] gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b] Length = 509 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/426 (30%), Positives = 229/426 (53%), Gaps = 18/426 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L DVL AQTG+GKT AFG+ + S A AL Sbjct: 21 GFEEATPIQAETIPVALTGVDVLGQAQTGTGKTAAFGIPTIERI------DSKARQVQAL 74 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA+QV EL + V GG + R+ R L+ IVV TPGRL DH Sbjct: 75 VLAPTRELAIQVAEELNKIGETKRVYALPVYGGQQIDRQIRGLKKNPQIVVATPGRLMDH 134 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ K + + ++ V+LDEADEML++GF +DIE IL P++R+ L+FSAT+ P I +A+ Sbjct: 135 MKRKTIKLDDIQTVILDEADEMLNMGFVEDIETILAGLPEERQTLLFSATMPPQIKKIAE 194 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K + + ++ +I+ + + + + + + ++ + +I+F T+ V Sbjct: 195 RFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRLIDIDSPELSIIFARTKKRVD 254 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 T+ L + + L G+L+Q +R ++ ++G + +ATDVAARG+D+ + V + Sbjct: 255 EVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILVATDVAARGLDISGVTHVYN 314 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 ++ +PE+ +HR GRTGRAG+ G ++ F+ P+ + + + R N + P++ Sbjct: 315 FDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFG-QVKAIERVTNKKMNRRHVPTIAE 373 Query: 378 IRERDAQRILQDPLFLDSIQ-GDEK---KMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433 + E + ++ ++ ++ +Q GD K ++ LL +++ +I A LR GL + Sbjct: 374 VLEGNQKQAAEE--LIERVQAGDFKAYTQLATELLEEYEAVEILAAALR----GLTKEPD 427 Query: 434 ITPVSL 439 TPV + Sbjct: 428 STPVEI 433 >gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091] gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091] Length = 462 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M] Length = 510 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/337 (36%), Positives = 183/337 (54%), Gaps = 2/337 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSP 71 A+ E GY T +Q + L D+L AQTG+GKT F L + L + N S Sbjct: 15 AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLNSMPANTSASG 74 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGV ++ + L++G IVV T Sbjct: 75 KRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVDIVVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++SHL+ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 135 PGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I TLA N + +A N + + V + + ++++ H +VF Sbjct: 195 EIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLVFT 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL +DG +V +ATD+AARGID+ Sbjct: 255 RTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGIDID 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 315 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 351 >gi|113971144|ref|YP_734937.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113885828|gb|ABI39880.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 433 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+S+ GY +T +Q+ + R +DVL SAQTG+GKT AF L + + Sbjct: 6 FSFCPEIL-RAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKM- 63 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 AEN + S L + PTRELA QV +E V GGV V + + L+ Sbjct: 64 AENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA I+V TPGRL +H+ L++S + +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA V+ + S ++Q++ D + +V ++ + G Sbjct: 184 LFSATFSSAVKKLANEMM---VKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG 240 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KN +VF +TR + K L + GE +Q R AL+ G+ RV +A Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+P LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354 >gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37] gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37] Length = 469 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 183/344 (53%), Gaps = 13/344 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L KDVL AQTG+GKT +F L + L Sbjct: 11 PKVL-KAIEEAGYTTPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMIHKLARGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + A+ IGGVS + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDTYSKHVKLTKALLIGGVSFKEQDVLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD------NAIVNIL-- 239 T++P I + + R+ +A + I AV+ S RD A++ L Sbjct: 187 TMAPEIERITNTFLSAPARIEVARQATASETITQGAVVFTPSRRDRESSEKRAVLRALID 246 Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 NAI+FC+ + V K L ++ + + G+L Q +R+ L RDG R+ Sbjct: 247 AEGEACSNAIIFCNRKVDVDIVAKSLTKYGYNAAPIHGDLDQSQRTRTLDGFRDGSVRLL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 IA+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G Sbjct: 307 IASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSG 350 >gi|114778501|ref|ZP_01453345.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus ferrooxydans PV-1] gi|114551226|gb|EAU53785.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus ferrooxydans PV-1] Length = 459 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/344 (38%), Positives = 189/344 (54%), Gaps = 13/344 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q+ L L +DV+ QTGSGKT AFGL L L D P Sbjct: 19 LATLGYEAMTPIQQQSLPDILAGRDVIAQGQTGSGKTAAFGLGLLQKL----DITKPHVQ 74 Query: 75 PLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L L PTRELA QV +E+ L K + V GG+ + L++GAHI+VGTPG Sbjct: 75 SLVLC--PTRELADQVAKEIRKLARKLANIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + + +VLDEAD ML++GF+ ++ I+ PK+R+ L+FSAT I Sbjct: 133 RIEDHMNRGTLKLDRVTTLVLDEADRMLEMGFQSVLDSIIGKIPKQRQTLLFSATFPDQI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVF 250 ++AK V V +AS H D +SD R A+ +L H + +VF Sbjct: 193 QSVAKRIMDKPVMVAVAST---HDDSSIEQHFYKVSDDEQRMTALRLLLLQHKPVSTLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+A K L H F +AL+G+L Q++R + + V +ATDVAARG+D+ Sbjct: 250 CNTKAETEAVAKTLVWHGFSALALNGDLEQRDRDQVMVRFANKSISVLVATDVAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 L+ VI+ ++ +PE +HR GRTGRAG KG++ + +N R Sbjct: 310 DALDAVINYHIAHDPEVHVHRIGRTGRAGSKGVACSLYRENPYR 353 >gi|332525252|ref|ZP_08401425.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332108534|gb|EGJ09758.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 520 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/346 (37%), Positives = 193/346 (55%), Gaps = 7/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65 +P+ + A+++ GY T VQ + P L D++VS+ TGSGKT +F L AL L A Sbjct: 1 MPEALARAVADAGYTTPTEVQSRAIPPALGGADLMVSSSTGSGKTASFVLPALTRILAAR 60 Query: 66 ND----RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRD 120 D S P L +APTRELA+QV + ++ G+ VA +GGV + + Sbjct: 61 GDGKRREKGVVSGPRILVLAPTRELAMQVAKATNDYGRHVQGLRVATIVGGVPYGAQLKA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++ TPGRL DH+ +++++ +VLDEAD MLD+GF DDI I ++P R Sbjct: 121 LRGPLDVLIATPGRLMDHMASGRAVLANVEMLVLDEADRMLDMGFIDDIHHIASATPAAR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-IL 239 + +M+SAT + + LA+ ++ R+ IAS H+DI+ R NA+++ IL Sbjct: 181 QTVMYSATFAGHVGRLAEELLREPQRIEIASHTDVHADIEQRLHWADNFAHKNALLDHIL 240 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + A+VF ST+ LAE V +L G Q R+ LQ +R ++ + Sbjct: 241 TERSVEQAVVFTSTQRDADWLADRLAEMGHHVASLHGGHPQGRRNRVLQGLRSRDLKILV 300 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARGID+P + VI+ L E+ +HR GRTGRAGR G++V Sbjct: 301 ATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRSGLAV 346 >gi|110803350|ref|YP_698172.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101] gi|110683851|gb|ABG87221.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101] Length = 478 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/380 (33%), Positives = 206/380 (54%), Gaps = 7/380 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I +AL+ GY N + VQEA + L+ +D++V +QTGSGKT +FG+ + Sbjct: 1 MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + E + L + PTRELA+QV EL + V A G + + R Sbjct: 61 EKINIEEKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L+ HIVVGTPGR+ DH+ L++S + VV+DEAD+ML +GF D I+ IL Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 + +FSAT S I + + Y ++ + + + S+ I+ A+ + ++ A+ L Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCL 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++AIVFC+TR V K+L + L G++ Q++R ++ RD +V + Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 TD+AARGI + +ELVI+ E+ E+ +HR GRTGRAGR+G ++ + ++ E + Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354 Query: 360 FREANVSVVWEPAPSVEAIR 379 + PS E ++ Sbjct: 355 EEYIGYEIRKASLPSDEEVK 374 >gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis 961-5945] gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis G2136] Length = 462 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|268592819|ref|ZP_06127040.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131] gi|291311604|gb|EFE52057.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131] Length = 643 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 141/421 (33%), Positives = 220/421 (52%), Gaps = 23/421 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q+ + + DVL AQTGSGKT AF L L + + Sbjct: 21 ALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLLHNIDPD------LK 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV + ++ V V GG + R L+ G IVVGTP Sbjct: 75 APQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ L++S LK +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 135 GRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEP 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + KD + I + DI V ++ A+V L AI+F Sbjct: 195 IRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 255 TKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 315 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVEL 374 Query: 373 PSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLR 422 P + + +R A++I Q L+S D+ + LLAK P E +AA L+ Sbjct: 375 PDADLLSQRRQAKFAEKIQQQ---LESSDLDQYR---SLLAKMSPSEDVDMETLAAALLK 428 Query: 423 I 423 + Sbjct: 429 M 429 >gi|41248|emb|CAA36872.1| unnamed protein product [Escherichia coli] gi|315619429|gb|EFU99973.1| ATP-independent RNA helicase dbpA [Escherichia coli 3431] Length = 432 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 12/365 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ A L L KDV V A+TGSGKT AFGL L + A + AL + P Sbjct: 1 MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL DH++ Sbjct: 55 TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI ++ Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ LELV++ E Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 L+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ +I Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIA 351 Query: 380 ERDAQ 384 +A+ Sbjct: 352 TLEAE 356 >gi|240128393|ref|ZP_04741054.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 462 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 199/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL +APTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD+ + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E+ R+R Sbjct: 366 NRKLPELTIEGMESTRKR 383 >gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640] gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06] Length = 462 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 198/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ + L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium HTCC2255] gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium HTCC2255] Length = 531 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/340 (37%), Positives = 185/340 (54%), Gaps = 2/340 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL GY T +Q + L KD++ AQTG+GKT AF L L LL Sbjct: 114 IVKALGFLGYTLPTPIQSQAIPAVLNSKDLVGLAQTGTGKTAAFALPLIQQLLMNPIAIK 173 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 SA A+ ++PTRELA+Q+ + + IGG + ++ RDL G I+V Sbjct: 174 GRSA-RAIILSPTRELALQIHEAFVSFGKRLPLNFTHAIGGAPIRKQMRDLSKGVDILVA 232 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + KGL + K +VLDEAD+MLD+GF ++ I+ K R+ L+FSAT+S Sbjct: 233 TPGRLEDLVDQKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISKVNKDRQTLLFSATMS 292 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L + Y D V+V++ EN I+ + ++ ++ A+ I+ + K IVF Sbjct: 293 KEIKKLTETYLTDPVQVSVTPENSTVDKIEQSLMHLSKQNKGLALQRIISANPKKRVIVF 352 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K L A+ G SQ +R AL + G+ + IATD+AARGID+ Sbjct: 353 SRTKHGSDKLVKWLGTQNIGADAIHGNKSQGQRQRALDDFKKGKTYILIATDIAARGIDI 412 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 P +E+VI+ +L + PE+ +HR GRT RAG G ++ F P Sbjct: 413 PGIEIVINFDLPNVPESYVHRIGRTARAGADGKAIAFCAP 452 >gi|90409951|ref|ZP_01217968.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum 3TCK] gi|90329304|gb|EAS45561.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum 3TCK] Length = 462 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 210/379 (55%), Gaps = 12/379 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY ++T +Q L L +DV+ +TGSGKT AFGL L L + R Sbjct: 19 LTSLGYESMTPIQAQSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEKLNVKRFRVQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QV +E+ L A+T + V GG+ + L++GAHI+VGTP Sbjct: 75 --SLVLCPTRELADQVAKEIRKL-ARTIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ +H+R LN+ L+ ++LDEAD ML++GF+D ++ I+D++P++R+ L+FSAT P Sbjct: 132 GRIEEHVRKGTLNLDDLEMLILDEADRMLEMGFQDSLDEIIDAAPQRRQTLLFSATYPPQ 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I ++A V + S + S + + R A+ +L H ++ +VFC+ Sbjct: 192 IKSIADRIMFKPVMAKVESTHDDSSIQQHFYKVDGNEQRLTALRLLLLKHRPESTVVFCN 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L ++ F +AL G+L Q+ER AL + V +ATDVAARG+D+ Sbjct: 252 TKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVRFANKSTSVLVATDVAARGLDIDS 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+ VI+ L+ + E +HR GRTGRAG KG++ +I + L + ++ E Sbjct: 312 LDAVINYHLARDTEVHVHRIGRTGRAGSKGVACSLISDKEHYKVAMLEDYLDRAISGEAL 371 Query: 373 PSVEAIRE---RDAQRILQ 388 PS++ + + R A LQ Sbjct: 372 PSMDLLDQPTFRPAMTTLQ 390 >gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142] gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142] Length = 480 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 152/478 (31%), Positives = 233/478 (48%), Gaps = 27/478 (5%) Query: 4 FENIPQVIGEA----LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 FEN+ + EA L G+ + T +QE + L DVL +QTG+GKT A+ L + Sbjct: 5 FENLG--LSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLPIL 62 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + N AL + PTRELA QV L+ + + + GG S+ R+ R Sbjct: 63 EQIDTRNSNVQ------ALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIR 116 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G IVVGTPGR+ D + K L + L+ VLDEADEML +GF DD++ IL +P Sbjct: 117 SLERGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDA 176 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNI 238 R FSAT+ I L + K V V++ + ID +V + A+ I Sbjct: 177 RNTACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKALQPI 236 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L ++AI+F T+ + S T L E V G LSQ +R + R+G+ ++ Sbjct: 237 LEIEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFREGKIKLV 296 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRR 355 +ATD+AARG+D+ +L VI+ +L N E +HR GRTGRAG+ G ++ + I + M R+ Sbjct: 297 VATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLVEPIDRRMVRQ 356 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415 E+ R+ + VEA R Q +++ L + + +V L ++DP+ Sbjct: 357 IEKRLRQKLETCKLPSRSQVEAKRLEKLQNEIKESLAGERM-ASFLPLVRELSDEYDPQA 415 Query: 416 IAAGFLRIHRAGLC---------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464 IAA L++ C PE P ++ + ++ + G +R N K Sbjct: 416 IAAAALQMIYDQDCPDWMKTDWEVPESTVPKPVIKRKGKYNSNHSKHN-GNSNRGNRK 472 >gi|294139619|ref|YP_003555597.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea DSS12] gi|293326088|dbj|BAJ00819.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea DSS12] Length = 435 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 195/351 (55%), Gaps = 2/351 (0%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+SE GY +T VQ+ + R +DVL SAQTG+GKT AF L + + Sbjct: 6 FSFAPEIL-RAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQKIF 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +N + S AL + PTRELA Q+ + V V GGV + + + L+ Sbjct: 65 -DNPMETQRSNARALILTPTRELASQIAENISDYSKYMDVSVLTIYGGVKLETQAQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I+V TPGRL +H++ LN+S++ +VLDEAD MLD+GF DI+ I+ + K+R+ L Sbjct: 124 GTDIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFISDIQKIMQAVNKQRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + +N+ S+N + V + + ++ Sbjct: 184 LFSATFSSAVKKLANDMLVKPKLINLNSQNSTADTVSQVIYPVEQRRKRELLSELIGKKN 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF +TR + + K L + GE +Q R AL+ ++G+ R +AT+V Sbjct: 244 WQQVLVFTATRDAADKLVKELNLDGITSSVVHGEKAQGTRRRALREFKEGKVRALVATEV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 AARG+D+ DLE V++ +L E+ +HR GRTGRAG+ G+++ ++ + +R Sbjct: 304 AARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 354 >gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans PW2] gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans PW2] Length = 618 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 195/357 (54%), Gaps = 8/357 (2%) Query: 4 FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++ P +I +A+ Y T VQ A + L ++D+L +AQTG+GKT AF L S Sbjct: 59 FEDLGLPDIILKAVRGLHYTTPTPVQAASIPSVLAKRDILAAAQTGTGKTAAFLLPAMSN 118 Query: 62 L-----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 L + R + P L I PTRELA Q+ + +T + +GGV + Sbjct: 119 LGHVVHQGRSRRSAEGRGPKMLIITPTRELAQQIDSVCTQIATRTKHIAVTVVGGVGYNP 178 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 ++ L+ G I+V TPGRL D I N+S ++ +V+DEAD MLD+GF ++ I+ + Sbjct: 179 QKSALRRGCDILVATPGRLIDLIDQGVCNLSEVEILVIDEADRMLDMGFLPSVKQIVALT 238 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 P +R+ L+FSAT+ ++ +D VRV IA+ +D + V+ +++ +V Sbjct: 239 PPERQTLLFSATLDEKTLGSIRDLVRDPVRVEIAAATSTADTVDQFVLPVSFDSKNDVLV 298 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +L+ GA IVF T+ + L A+ G+ SQ +R AL+ RDGR+ Sbjct: 299 EVLKREGASRVIVFMRTKHRADSCCRRLTHAGISAAAIHGDRSQAQRERALKAFRDGRSD 358 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V +ATDV ARGID+ D+ V++ ++ P + +HR GRTGRAG G ++ FV Q++ Sbjct: 359 VLVATDVIARGIDISDVRYVVNFDVPGEPIDYIHRIGRTGRAGEVGWALTFVTRQDI 415 >gi|325918819|ref|ZP_08180902.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC 35937] gi|325534965|gb|EGD06878.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC 35937] Length = 429 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 193/347 (55%), Gaps = 11/347 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALS+ G+ T +Q+ + P L +D++ AQTGSGKT+A+ L L + +P + Sbjct: 19 ALSKAGHRTPTPIQQQAIPPMLAGRDLIAMAQTGSGKTLAYALPLL-----QQRMLAPET 73 Query: 74 APL---ALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128 AP A+ + PTRELAVQV L L A + V IGG S++ + L+ GA IV Sbjct: 74 APRVLGAVVLVPTRELAVQVDETLRQLAAHLPRRLKTVVAIGGSSINPQLLALRGGADIV 133 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + L + + +VLDEAD +L+LGF +++ IL P +R+ ++FSAT Sbjct: 134 VATPGRLLDLVDHNALRLGEVATLVLDEADRLLELGFGAELDRILALLPTQRQSVLFSAT 193 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 PAI LAK +D +R+ I + Q I+ RA+ V R + ++L HG + + Sbjct: 194 YPPAIAALAKRRLRDPLRITIDATPEQAPAIEQRALAVDAGQRTQLLRHLLTEHGWSHVL 253 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF ++R + + + L + L GELSQ R+ LQ + +V +ATD+A RGI Sbjct: 254 VFVASRHTADKVAEKLGKAGINAQPLHGELSQGRRARTLQSFKQHEVQVLVATDLAGRGI 313 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 D+ L VI+ +L + + HR GRT RAG G+++ F+ N Q+ Sbjct: 314 DIDALPAVINYDLPRSTVDYTHRIGRTARAGASGVAISFITADNAQQ 360 >gi|119776347|ref|YP_929087.1| ATP-dependent RNA helicase RhlB [Shewanella amazonensis SB2B] gi|189040038|sp|A1SAL1|RHLB_SHEAM RecName: Full=ATP-dependent RNA helicase rhlB gi|119768847|gb|ABM01418.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis SB2B] Length = 439 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/350 (34%), Positives = 201/350 (57%), Gaps = 11/350 (3%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA---- 57 F ++P + +AL+E G+ + T +Q L L +KD+ AQTG+GKT+AF +A Sbjct: 11 FADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKTLAFLVATFNH 70 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L +T + E+ + + P A+ +APTRELA+Q+ ++ L +G+ V + GG + Sbjct: 71 LLTTPVPEHRQLN---QPRAIVMAPTRELAIQIAKDATLLSKHSGLKVGIVYGGEGYEAQ 127 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R+ L G +++GT GR+ D++R +N+ ++AVVLDEAD M DLGF DI F+ + P Sbjct: 128 RKVLDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIRFLFNRMP 187 Query: 178 --KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 K+R ++FSAT+S + LA ++ D V+V IA E + +I ++ D+ + Sbjct: 188 GAKERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSMEDKLKLL 247 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +++ + AIVF +T+ L +V L+G++ Q++R L+ Sbjct: 248 HSLIEEDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQSEL 307 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +ATDVAARG+ + D+ V + +L + E+ +HR GRTGRAG+KG+SV Sbjct: 308 DILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSV 357 >gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] Length = 493 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/376 (32%), Positives = 205/376 (54%), Gaps = 21/376 (5%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 Y T +QE + + KD++ AQTG+GKT AF L + + L E R AL Sbjct: 23 YKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILNAL-DEGKR-----DIQALI 76 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 + PTREL++Q+ +E+E L V V GG + ++ L+ IVVGTPGR+ DH+ Sbjct: 77 LTPTRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLSKLKETVQIVVGTPGRVLDHM 136 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 + L+ + +VLDEAD+M+++GF +D+E ++ +P +R++L+FSAT+ + LA Sbjct: 137 KRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLLFSATMPDLVKKLAHR 196 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259 + K + I + + I+ +V SD+ +A+V++L IVF +T+ V + Sbjct: 197 FMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVLEQEQPFLTIVFANTQVRVQQ 256 Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 T L E+ AL G+LSQ +R ++ R+ R + IATD+AARG+D+ + VI+ Sbjct: 257 LTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATDIAARGLDVEGVTHVINY 316 Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 +L ++ ++ +HR GRTGRAG+KG ++ +I + R + S+ Sbjct: 317 DLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARFAKATKASI------------ 364 Query: 380 ERDAQRILQDPLFLDS 395 +RILQ+ LD+ Sbjct: 365 ---EERILQEGRHLDA 377 >gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565] gi|260623074|gb|EEX45945.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565] Length = 374 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 196/345 (56%), Gaps = 1/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY+ TS+QE + L ++D+L AQTG+GKT +F + + L A Sbjct: 7 NIIEPILKAIEEKGYIAPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQHLQA- 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N AL + PTRELA+Q+ ++ T V V GGV+ + L+ G Sbjct: 66 NKETDKRQGIKALILTPTRELAMQISECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRKGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D I +++++++ VLDEAD MLD+GF DI+ IL PK+++ L F Sbjct: 126 DILVATPGRLLDLINQGHIHLTNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I L K+ K+ V++ I ++ I V ++ +++IL+ + Sbjct: 186 SATMPDSIIALTKSLLKNPVKIYITPKSSTVDSIKQIIYFVEKKEKSQLLISILQKAEDR 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++F T+ + + ++L + A+ G SQ R +AL + G+ +V +ATD+A+ Sbjct: 246 SVLIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKVMVATDIAS 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RGID+ +L LVI+ +L PE +HR GRTGRAG +G ++ Q Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQ 350 >gi|329897169|ref|ZP_08271909.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC3088] gi|328921324|gb|EGG28718.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC3088] Length = 397 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 203/361 (56%), Gaps = 16/361 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRF 69 + + + G+V + +Q AIL LR D + AQTG+GKT AF + + + LLA +++RF Sbjct: 28 KGIKDLGFVTCSPIQGAILPHTLRGLDAIGKAQTGTGKTAAFLITVFNDLLAHPIDDERF 87 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIV 128 P AL IAPTREL +Q+ + + L TG+ V IGG+ ++ + L Q +V Sbjct: 88 --VGEPRALVIAPTRELVMQIAEDAKDLGKYTGLRVVTLIGGMDYQKQLQKLDQEPVDLV 145 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFS 186 V TPGRL D + + L + ++ +VLDEAD MLD+GF ++ I+ ++P K R+ L+FS Sbjct: 146 VATPGRLIDFMTRQDLFLDRVETIVLDEADRMLDMGFIPQVKRIVRATPPKEHRQTLLFS 205 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT + I L++ + +++ I E+ +++D + LV+ R ++N+LR A + Sbjct: 206 ATFTQDIINLSEQWTYKPIKIEIEPESVATANVDQKVYLVSAEQRYKILLNLLRDEAATS 265 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF + R V + L + LSGE+ Q +R+ L+ + G+ +V +ATDVA R Sbjct: 266 VIVFANRRDQVRHLYERLRKASIPCGVLSGEIPQNKRTRTLEDFKRGKLKVLVATDVAGR 325 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQNMQRRAER 358 GI + + V++ L +P++ +HR GRTGRAG G S+ F++P ER Sbjct: 326 GIHVDGVSHVVNYNLPEDPDDYVHRIGRTGRAGATGTSISFASEDDAFLLPDIEALLGER 385 Query: 359 L 359 L Sbjct: 386 L 386 >gi|324021225|gb|EGB90444.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3] Length = 432 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 12/365 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ A L L KDV V A+TGSGKT AFGL L + A + AL + P Sbjct: 1 MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL DH++ Sbjct: 55 TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI ++ Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ LELV++ E Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 L+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ +I Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIL 351 Query: 380 ERDAQ 384 +A+ Sbjct: 352 PLEAE 356 >gi|310644788|ref|YP_003949547.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2] gi|309249739|gb|ADO59306.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2] Length = 481 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/379 (32%), Positives = 205/379 (54%), Gaps = 8/379 (2%) Query: 2 KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F + P + I AL+ GY T +Q ++ L +KD++ +QTGSGKT A+G+ L Sbjct: 4 KHFADYPLSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPLC 63 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L+ N+ + P AL + PTRELA+QV ++ + + G H ++ Sbjct: 64 E-LVDWNE-----NKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKA 117 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L+ H+ VGTPGR+ DHI L+++ + +V+DEADEML++GF + ++ I+ + P Sbjct: 118 ELKQRTHVAVGTPGRVLDHIERGTLSLNRIAYLVIDEADEMLNMGFIEQVQSIIQALPND 177 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT + L++ Y D V + I + + ID+ + V +D+ + ++L Sbjct: 178 RVTMLFSATFPEDVAKLSRKYMNDPVEIEIKATGVTTATIDHSLIQVREADKLALLQDLL 237 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + I+FC T+ V + LA+ + + G + Q ER + R G+ R I Sbjct: 238 VVENPDSCIIFCRTQEHVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLI 297 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARGID+ ++ VI+ ++ E+ +HR+GRTGRAG+ G ++ +I +R + Sbjct: 298 ATDVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAITLITPKDSKRLADI 357 Query: 360 FREANVSVVWEPAPSVEAI 378 ++ APS EA+ Sbjct: 358 EAYIGFAIPQVKAPSEEAV 376 >gi|281415806|ref|ZP_06247548.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665] Length = 597 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 184/348 (52%), Gaps = 10/348 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69 I EAL +G V+ +Q L L D++ A+TG+GKT+ FG+ + + Sbjct: 48 IVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAIGPGEPGW 107 Query: 70 ------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 A AP AL +APTRELAVQV +L A+ + +A GG + + +LQ Sbjct: 108 DGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEELQR 167 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGRL D +R + L + + VVLDEADEMLDLGF D+E +L + P R+ + Sbjct: 168 GVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVRQTM 227 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAIVNILR 240 +FSAT+ + +A+ Y + A E DI D+D + L+ Sbjct: 228 LFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELVARALQ 287 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G I+F T+ + +R L F AL G+L Q R AL+ R+G+ + +A Sbjct: 288 AEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDILVA 347 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ D+ V + + + + +HR GRTGRAG KG++V ++ Sbjct: 348 TDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395 >gi|218780159|ref|YP_002431477.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761543|gb|ACL04009.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum alkenivorans AK-01] Length = 489 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 196/343 (57%), Gaps = 6/343 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P+ + E L + G+ T +Q +L L KD+ AQTG+GKT AF + + S LL Sbjct: 29 DLPETLLEGLKDAGFERCTPIQAQVLPVALSGKDIAGQAQTGTGKTAAFLVPMFSKLLGL 88 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R + P AL +APTRELA+Q+ E E L T +A IGG+ ++ L+ GA Sbjct: 89 ENRSK--TLPSALIVAPTRELALQIYEEAEVLGGHTDFTIAQAIGGMDYRKQMDILKQGA 146 Query: 126 HIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182 I++GTPGR+ D+ + +G+ +H +K+VV+DEAD +LDLGF D+ +IL P +KR+ Sbjct: 147 DILIGTPGRIIDYYK-QGIFKTHAIKSVVIDEADRLLDLGFAKDMRYILRKMPHYEKRQS 205 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT+S + L +Y +++ E ID V + ++ + + Sbjct: 206 MLFSATLSYRVLELTYDYMNLPEFISVTPEEVTVKGIDQILYHVGQDQKLPLLLGVFKNE 265 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A+VF +T++ V L + F ++G+L Q++R ++ ++G + +ATD Sbjct: 266 DWTRALVFVNTKSGVEFVAHKLRGNGFPAGGITGDLPQRKRLQLMERFKNGELSILVATD 325 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VA+RGI + D+ VI+ +L +PEN +HR GRT RAG+ G ++ Sbjct: 326 VASRGIHVEDVSHVINYDLPQDPENYVHRIGRTARAGKTGKAI 368 >gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1] gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1] Length = 521 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 186/336 (55%), Gaps = 7/336 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY T +QE + ++ DV+ AQTG+GKT AFGL + + +N + Sbjct: 15 AVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQ--- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL I+PTRELA+Q EL L + V V GG + R+ L+ I+VGTPG Sbjct: 72 ---ALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKEHPQILVGTPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ ++ +K +V+DEADEML++GF +DIE I+ +P R+ L+FSAT+ I Sbjct: 129 RLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDI 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + +D V+IAS+ +D V ++ +A+ + + AIVF T Sbjct: 189 KKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPELAIVFGRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V TK L ++ + G+L Q R L+ + G + +ATDVAARG+D+ + Sbjct: 249 KRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348 V + ++ +PE+ +HR GRTGRAG G+SV FV+ Sbjct: 309 THVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVV 344 >gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [polymorphum gilvum SL003B-26A1] gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum SL003B-26A1] Length = 486 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/377 (34%), Positives = 197/377 (52%), Gaps = 8/377 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T++Q + L +DVL AQTG+GKT +F L + + L R A Sbjct: 15 AVKAAGYTEPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPMLTLLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV E + VA+ IGGVS + R + GA +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVEENFEKYGVNHKLNVALLIGGVSFADQDRKIDRGADVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ L + ++ +V+DEAD MLD+GF DIE I P R+ L FSAT+ P I Sbjct: 132 RLLDHVERGKLMLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNIL-RYHGAKNAIVF 250 L + + ++ ++ +A + ++ V D + + +L KNAIVF Sbjct: 192 QRLTETFLQNPAKIEVAPRSSTAENVTQYIVAAGSVDFEKRAKLRELLGEAEDLKNAIVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ + L H F V L G++ Q+ R L+ R G + +A+DVAARG+D+ Sbjct: 252 CNRKRDVTTLFRSLERHGFNVGCLHGDMDQRTRMQTLESFRKGTLTLLVASDVAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW- 369 PD+ V + ++ + E+ +HR GRTGRAGR G+S ++ + + + N S+ W Sbjct: 312 PDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGVSYTLVTGEDSKYLSAIEKLINKSITWL 371 Query: 370 -EPAPSVEAIRERDAQR 385 EP A ER +R Sbjct: 372 GEPLDFEAAEAERKERR 388 >gi|312978402|ref|ZP_07790144.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus crispatus CTV-05] gi|310894745|gb|EFQ43817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus crispatus CTV-05] Length = 495 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L+ KDV+ AQTG+GKT AFGL + + + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQMIDKKE------ 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131 A A+ I PTRELA+Q EL L V V GG + R+ R L++ I+VGT Sbjct: 68 KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +N+ +KAVVLDEADEMLD+GF DIE IL + +++ L+FSAT+ Sbjct: 128 PGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + V I ++ I+ V S++ + + ++ G A+VF Sbjct: 188 PILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R + L+ R+G+ + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349 >gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] Length = 767 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/351 (37%), Positives = 195/351 (55%), Gaps = 8/351 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + A+ E G+ T++Q A + LR +DV+ AQTG+GKT AF L L + + E Sbjct: 133 GLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAHIDPE 192 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 AL +APTRELA+Q + +E AK+ GV VA GG S + + L+ G Sbjct: 193 KREVQ------ALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALEGG 246 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D + L + ++ VLDEADEML +GF +D+E I P+ R + Sbjct: 247 AQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISAL 306 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ P I +A+ + DA V I+ S + +V + A+ +L A Sbjct: 307 FSATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVLAVTEA 366 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + A+VF TR++ T L ALSG++ Q+ER + +RDG V +ATDVA Sbjct: 367 QAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVATDVA 426 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ARG+D+ + LV++ ++ + +HR GRTGRAGR G S+ FV P+ R Sbjct: 427 ARGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPR 477 >gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1] gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1] Length = 403 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 188/337 (55%), Gaps = 8/337 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++ + G+ T VQE + L KD++ AQTG+GKT AFG+ + T+ ++ + Sbjct: 25 SIRKMGFKKPTEVQEKTIPLILEGKDIIAQAQTGTGKTAAFGIPIVETVNTKSRKIQ--- 81 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV-VGTP 132 AL + PTRELA+QV +E++ + + + GG S+ + L+ G +V VGTP Sbjct: 82 ---ALVLVPTRELAIQVTKEIKDIGREKRIFALAVYGGKSIRHQIDFLKKGKDVVIVGTP 138 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I K LN++ +K VLDEAD MLD+GF +DIEFI + +P ++ L+FSAT+ A Sbjct: 139 GRIKDLIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEFIFEQTPPVKQTLLFSATMPKA 198 Query: 193 ITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA+ + D V I E I +A V + IL + K +IVF Sbjct: 199 IMRLAERFLNDDYEIVKIKPEEVTVDRIKQKAYRVDTGKEFETLTKILNENEGKKSIVFT 258 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +K L F A+ G+ SQ +R L+ R R + +ATDVAARG+D+ Sbjct: 259 ETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRNRIDILVATDVAARGLDIK 318 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +++V + L + E+ +HR GRTGRAG+ G+++ +I Sbjct: 319 GVDVVYNYSLPRDVESYIHRIGRTGRAGKDGLAISII 355 >gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49] gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49] Length = 419 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/338 (37%), Positives = 188/338 (55%), Gaps = 6/338 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSP 71 +A+S++GY + +Q + L KDVL SAQTG+GKT F L + + + R P Sbjct: 14 KAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPMLHIITKQPFQRHRP 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A L + PTRELA Q+ +E++ A T V V GGV+ + + R L+ G I+V T Sbjct: 74 VKA---LIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRALKQGTDILVAT 130 Query: 132 PGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 PGRL D H +G N+ ++ +VLDEAD MLD+GF DI IL P KR+ L+FSAT S Sbjct: 131 PGRLLDLHSQGV-FNMKKVEFLVLDEADRMLDMGFVRDINKILAILPAKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+++ + V V EN + S + N ++ ++ + ++F Sbjct: 190 KEIKKLAQSFLTNPVLVEAQRENSTAEKVKQTIYKTNKSAKTNLVIKLITEGNWEQVLIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + + A+ G SQ R+ AL +DG RV +ATD+AARG+D+ Sbjct: 250 TRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDGSIRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L VI+ EL + PE+ +HR GRT RAG G ++ ++ Sbjct: 310 PLLPHVINYELPNIPEDYVHRIGRTARAGASGDAISIV 347 >gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1 [Xenopus (Silurana) tropicalis] Length = 448 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 192/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ E + G+ T +Q + L+ +D++ A+TGSGKT AF L + TLL Sbjct: 26 VTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLLESP 85 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + + L H Sbjct: 86 QRL------YALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKPH 139 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 140 VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + KD V+ ++S+ + + V + +D+ +V IL Sbjct: 200 SATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGN 259 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 260 SFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVAS 319 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 320 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQ 364 >gi|332286324|ref|YP_004418235.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7] gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7] Length = 477 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 186/335 (55%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY + T +Q + ++ D+L +AQTG+GKT F L + LL + Sbjct: 19 AVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPILHRLLQNPAQGRKPG 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTREL QV + T + V GGV+++ + L+ I+V TPG Sbjct: 79 QPRVLILTPTRELTAQVEESVRTYSKHTSIRSMVMFGGVNINPQISALRKPLDILVATPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH + K +++S ++ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT S I Sbjct: 139 RLLDHAQQKTVDLSAVEILVLDEADRMLDMGFIRDIRRILALLPKQRQNLLFSATFSDEI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+K D + +++A N ++ VL + + + + +I+R G +VF T Sbjct: 199 RALSKGVLNDPIEISVARRNTASELVEQSVVLTEQAHKRDLLSHIIRESGWHQVLVFTRT 258 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + A+ G SQ R+ AL +DG+ V +ATD+AARGID+ L Sbjct: 259 KHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFKDGKVAVLVATDIAARGIDIDQL 318 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G ++ ++ Sbjct: 319 PHVVNFELPNVPEDYVHRIGRTGRAGSTGSAMSLV 353 >gi|326203304|ref|ZP_08193169.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] gi|325986562|gb|EGD47393.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] Length = 542 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/334 (34%), Positives = 187/334 (55%), Gaps = 14/334 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ T VQ + L +D++V ++TGSGKT FG+++ E A Sbjct: 16 KAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSMLQMTDPE------A 69 Query: 73 SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 PL L + P RELAVQV ++ ++L KT V G +++ E + L+ G IV Sbjct: 70 EGPLGLILTPARELAVQVDSDIHKMAKYLKHKTTAVY----GQHNINVETQTLKKGVSIV 125 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 GTPGR+ DHI L +++ +VLDEAD MLD+GF D + I+ + PK R L+FSAT Sbjct: 126 TGTPGRVFDHISHGSLVTKNIRFLVLDEADRMLDMGFLDQVVRIIKTLPKDRITLLFSAT 185 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P I + Y ++ + I S+ + I V ++++ + +L ++ + Sbjct: 186 MPPEIHNICSRYMQNPTTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEKPESCM 245 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+T+A+V R L + + AL G++ Q +R N +Q + G+ + +ATDVAARGI Sbjct: 246 IFCNTKAAVDRVQSFLTKKGYSSQALHGDIPQSKRLNTIQQFKQGKFHILVATDVAARGI 305 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + L LVI+ ++ ++ +N +HR GRTGRAG G Sbjct: 306 HIEGLSLVINYDVPNDKDNYVHRIGRTGRAGHDG 339 >gi|300971643|ref|ZP_07171516.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1] gi|301046191|ref|ZP_07193365.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1] gi|300301848|gb|EFJ58233.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1] gi|300411129|gb|EFJ94667.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1] gi|315295345|gb|EFU54675.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1] Length = 432 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 12/365 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ A L L KDV V A+TGSGKT AFGL L + A + AL + P Sbjct: 1 MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL DH++ Sbjct: 55 TRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI ++ Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ LELV++ E Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 L+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ +I Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTLPANSSIV 351 Query: 380 ERDAQ 384 +A+ Sbjct: 352 PLEAE 356 >gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] Length = 506 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 186/340 (54%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI VI +AL++ Y T +Q + L +D+L AQTG+GKT AF + + L + Sbjct: 23 NISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQLLNEQ 82 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + A AL ++PTRELA+Q+ ++ T + +GGVS + R LQ GA Sbjct: 83 PPKPGMARRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQGA 142 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D + K +++ H++ +VLDEAD MLD+GF D++ I+ P K++ L F Sbjct: 143 DILIATPGRLLDLMNQKRIDLQHVEILVLDEADRMLDMGFIHDVKRIISKMPSKKQTLFF 202 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ IT L K ++ V+V I + I L+ ++ + +++ Sbjct: 203 SATMPAEITQLVKTLLQNPVKVEITPVSSTAERIKQSVYLLETGNKQKQLNELMKDPSIV 262 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +A+VF T+ R + L + A+ G SQ R AL+ + G RV +ATD+AA Sbjct: 263 SALVFTRTKRGADRVVRDLTKVNITAQAIHGNKSQVSRQTALKNFKSGETRVLVATDIAA 322 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L VI+ L + PE +HR GRTGRAG G ++ Sbjct: 323 RGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAI 362 >gi|42784637|ref|NP_981884.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987] gi|42740569|gb|AAS44492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus ATCC 10987] Length = 481 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 120/366 (32%), Positives = 196/366 (53%), Gaps = 8/366 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P R ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCS 252 L++ Y + I + I++ + A+ D +++ ++ + I+FC Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEH-TLFEAIEDEKFSLLKDVTTIENPDSCIIFCR 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +V + L + + G + Q++R + R G+ R +ATDVAARGID+ + Sbjct: 251 TQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDN 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + Sbjct: 311 ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIG 370 Query: 373 PSVEAI 378 PS E + Sbjct: 371 PSKEEV 376 >gi|157374161|ref|YP_001472761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157316535|gb|ABV35633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 435 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 195/351 (55%), Gaps = 2/351 (0%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+SE GY +T VQ+ + R +DVL SAQTG+GKT AF L + + Sbjct: 6 FSFAPEIL-RAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMF 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +N + S AL + PTRELA Q+ + V V GGV + + + L+ Sbjct: 65 -DNPTETQRSNTRALILTPTRELASQIADNINDYSKYMEVSVLTIYGGVKLETQAQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA I+V TPGRL +H++ LN+S++ +VLDEAD MLD+GF DI+ I+ + K R+ L Sbjct: 124 GADIIVATPGRLLEHLQACNLNLSNVDFMVLDEADRMLDMGFISDIQKIMQAVNKNRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + +++ S+N + V + + ++ Sbjct: 184 LFSATFSSAVKKLANDMLVKPKLISVDSQNSTADTVSQVVYPVEQRRKRELLSELIGKKN 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF +TR + + K L + GE +Q R AL+ ++G+ R +AT+V Sbjct: 244 WQQVLVFTATRDAADKLVKELNLDGITSAVVHGEKAQGNRRRALREFKEGKVRALVATEV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 AARG+D+ DLE V++ +L E+ +HR GRTGRAG+ G+++ ++ + +R Sbjct: 304 AARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 354 >gi|223944961|gb|ACN26564.1| unknown [Zea mays] Length = 734 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 192/358 (53%), Gaps = 20/358 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71 A+ + GY + +Q A + L+++DV+ A+TGSGKT AF L + S T L + Sbjct: 327 AIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENE 386 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G IV+ T Sbjct: 387 AEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQGFKIRQGCEIVIAT 446 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179 PGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 447 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 506 Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 R MFSAT+ PA+ LA+ Y ++ V V I + + I ++V S++ Sbjct: 507 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESEKMPR 566 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + IL G K AIVFC+T+ + K L + F+V L G SQ +R +L R+ R Sbjct: 567 LQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKSQDQREISLDGFRNRR 626 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQN 351 V +ATDVA RGID+PD+ VI+ E+ S+ + HR GRTGRAG+KG+ S F+ +N Sbjct: 627 FNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGVASSFLTYEN 684 >gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus indolifex HEL-45] gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus indolifex HEL-45] Length = 438 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 115/347 (33%), Positives = 193/347 (55%), Gaps = 2/347 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + L+E G + T +Q + + +DV+ AQTG+GKT AFG+ L + ++ Sbjct: 9 LPKKLVARLNEMGLKDPTPIQRQAIPQAMNGRDVMGLAQTGTGKTAAFGVPLLAQMMELE 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R P S L +APTRELA Q+ L T + VA+ +GG S++ + + L+ G Sbjct: 69 GRPEPRSV-RGLVLAPTRELAQQIAVNLRGYAEGTQIKVAMVVGGQSINTQIKRLERGVD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL D + + + + +VLDEAD+MLD+GF D+ I + PK+R+ ++FS Sbjct: 128 LLIATPGRLLDLLDRRAVKLDTTTFLVLDEADQMLDMGFIHDLRKISNLIPKERQTMLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + +A +Y +R+ ++ + + +A +++ + +L H + Sbjct: 188 ATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAKAEKTELLKELLAKHKGER 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VF T+ + K L + F ++ G SQ +R A+ + G V +ATDVAAR Sbjct: 248 ALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKGGDITVLVATDVAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 G+D+PD++ V + EL + P+N +HR GRT RAG+ G +V F P M Sbjct: 308 GLDIPDVKHVYNFELPNVPDNYVHRIGRTARAGKDGAAVAFCAPDEM 354 >gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82] Length = 453 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 189/339 (55%), Gaps = 7/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL + GY T +Q L L +D++ A TGSGKT AF L + L + Sbjct: 30 EALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPILQKLWEDPKGL--- 86 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A +APTRELA Q+ ++ E L + G AV +GG+ + + L HIVV TP Sbjct: 87 ---FACVLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIALAKRPHIVVATP 143 Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL H+ KG ++ +K +VLDEAD +LDL F I+ IL PK+R +FSAT++ Sbjct: 144 GRLMQHLEETKGFSLRSIKFLVLDEADRLLDLDFGASIDKILKVIPKERTTYLFSATMTT 203 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + + VR+ ++S+ + S + +L+ L D+D ++ ++ + I+F Sbjct: 204 KVAKLQRASLSNPVRIEVSSKYQTVSTLLQYYLLMPLKDKDAYLIYLINSLAQNSIIMFT 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T R + +L F V L G+LSQ +R AL + G RV +ATDVA+RG+D+P Sbjct: 264 RTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRRVLVATDVASRGLDIP 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ ++ ++ +HR GRT RAGR G S+ ++ Q Sbjct: 324 SVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQ 362 >gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 506 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 69 -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|296273792|ref|YP_003656423.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097966|gb|ADG93916.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM 7299] Length = 434 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 189/354 (53%), Gaps = 9/354 (2%) Query: 1 MKIFENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 MK F NI I +AL E GY T VQE ++ L+ DV+ +AQ+G+GKT AF L + Sbjct: 1 MKTFNNIKLCSEILKALEEEGYEKPTEVQEKVIPVLLKNSDVIATAQSGTGKTAAFVLPI 60 Query: 59 ASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L D S L +L + PTRELA Q+ + + + + +GG+S + Sbjct: 61 LQKLFETQDNDSTNKRVLRSLILVPTRELAKQIEKSISHYGRYLDIKQTIVVGGLSHKEQ 120 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R + G ++V TPGRL DHI+ K +N+S + +VLDEAD ML++GF DIE I Sbjct: 121 IRKINAGIDVLVATPGRLIDHIKTKSVNLSSINNIVLDEADTMLEMGFLKDIELIFSQCA 180 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 K R + MFSATI+ I LAK + V + ++S Q S +D + L D D I Sbjct: 181 KTRHIGMFSATINQNIKKLAKEFLHKPVVIEVSS---QRSAVDIIEQQIYLMDEDKKIEF 237 Query: 238 ILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + G++N +VF +T+A T+ + + G++ Q R+ AL+ + Sbjct: 238 LSYLIGSENWEQVLVFVNTKAKADEITEQFNLDGLKTACIHGDIKQPVRARALEGFKSKS 297 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RV +ATD+AARGID+ L V++ EL + HR GRTGRAG G++ ++ Sbjct: 298 LRVLVATDIAARGIDIELLPNVVNFELPETTVDYTHRIGRTGRAGNPGVATTLL 351 >gi|92113747|ref|YP_573675.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens DSM 3043] gi|91796837|gb|ABE58976.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens DSM 3043] Length = 424 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 190/344 (55%), Gaps = 5/344 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + A+ G+ T +Q L L DV+ AQTG+GKT AF +++ + L E Sbjct: 50 DLPVPLMRAIHALGFEYCTPIQAEALAKTLLGGDVVGKAQTGTGKTAAFLISILAYFLEE 109 Query: 66 N--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 D P AP AL +APTRELA+Q+ ++ + L T + VA +GG+ ++R L Sbjct: 110 KAPDGQKPG-APRALIVAPTRELALQIEKDAKALARFTSLNVASVVGGMDYQKQRDQLGR 168 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRR 181 ++V TPGRL D + ++++ + +VLDEAD ML +GF D++ I+ +PK +R+ Sbjct: 169 KVDVLVATPGRLLDFHEKRDVDLTQTEVLVLDEADRMLSMGFIPDVKRIVRHTPKAEERQ 228 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 +FSAT S I LA + DA V I ++ID R LV+ SD+ +VN+L Sbjct: 229 TFLFSATFSQDILNLANQWTHDAAHVEIEVSLENAANIDQRVYLVSDSDKQRLLVNLLNQ 288 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + IVF + R V L + V LSG++ Q R L R+G V +AT Sbjct: 289 ENMERVIVFGNRRDLVRNLDSELRKAGINVAMLSGDVPQNTRITTLDKFRNGEVDVLVAT 348 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DVA RGI + D+ V++ L +PE+ +HR GRTGRAG +G+S+ Sbjct: 349 DVAGRGIHIDDVSHVVNYTLPEDPEDYVHRIGRTGRAGAEGVSI 392 >gi|119773890|ref|YP_926630.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B] gi|119766390|gb|ABL98960.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B] Length = 467 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 196/363 (53%), Gaps = 7/363 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E LS GY +T +Q L L +DV+ +TGSGKT AFGL L + L + R Sbjct: 23 ENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQ-- 80 Query: 73 SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L + PTRELA QV +E+ L V V GGV + + L++GAHI+VGT Sbjct: 81 ----TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAHIIVGT 136 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I+ SP++R+ L+FSAT Sbjct: 137 PGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIARSPRERQTLLFSATFPE 196 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I T+A+ + V V +A+ + + + + L R A+ +L H ++A+VFC Sbjct: 197 QIQTIAQQVMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQALQLLLLEHKPESAVVFC 256 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L F V+AL G+L Q++R L + A V +ATDVAARG+D+ Sbjct: 257 NTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDID 316 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L+ V + ++ + E +HR GRTGRAG KG + + L + EP Sbjct: 317 ALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKIALLEEYLERDIQSEP 376 Query: 372 APS 374 PS Sbjct: 377 LPS 379 >gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae bacterium TAV2] gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae bacterium TAV2] Length = 536 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 120/354 (33%), Positives = 184/354 (51%), Gaps = 6/354 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T +Q + L +DV SAQTG+GKT AF L + L A R Sbjct: 147 AVTEMGYTEPTPIQAQAVPAVLAGRDVTGSAQTGTGKTAAFALPILHKLGAHERRLR--- 203 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA+QV + T + V GGV ++R DLQ G +V TPG Sbjct: 204 ---CLVLEPTRELALQVEEAFQKYSKYTDLTATVVYGGVGYGKQREDLQRGVDVVAATPG 260 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI + ++ ++ +VLDE D MLD+GF D++ I+ P+ R+ L FSAT+ P + Sbjct: 261 RLLDHIEQGTMTLADVEILVLDEVDRMLDMGFLPDVKRIVQQCPQARQTLFFSATLPPEL 320 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA +D V + I I + V S + + ++++L K+ I+F T Sbjct: 321 AQLASWALRDPVEIKIGQRRSPAETISHAFYPVVASQKFDLLIDLLSRTEFKSVIIFTRT 380 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R L V + + +Q+ER AL+ + G+ V +ATD+AARG+D+ + Sbjct: 381 KMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKSGKFEVLVATDIAARGLDIAGV 440 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 VI+ ++ NPE+ +HR GRTGRA G + ++ ++ R A + R N + Sbjct: 441 SHVINYDVPENPEDYVHRIGRTGRANASGDAFTLVTEDDVRDARSIERYINAEI 494 >gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7] gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7] Length = 374 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 201/363 (55%), Gaps = 11/363 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+ G+ + +Q + L D++ AQTG+GKT+AFG + S + Sbjct: 10 NLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVLSQI-ES 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +D+ S AL + PTRELA+QV EL + + GG + R+ + L+ G Sbjct: 69 SDKIS------ALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRRGV 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DHI+ L++S + +VLDE+DEML++GF DDIE I+ S K R+ L+F Sbjct: 123 DVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTLLF 182 Query: 186 SATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT+ I LA Y K+ V+ + I + I V DR ++ IL Sbjct: 183 SATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRILDIDEP 242 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +AI+FC T+ V + + + V + G++ Q +R N L+ ++G +ATDVA Sbjct: 243 SSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATDVA 302 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFR 361 ARGID+ D+ VI+ +L + E+ +HR GRTGRA ++G++ V P+ M ++ E+ + Sbjct: 303 ARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQLEKFTK 362 Query: 362 EAN 364 N Sbjct: 363 RQN 365 >gi|260428461|ref|ZP_05782440.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45] gi|260422953|gb|EEX16204.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45] Length = 430 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 194/368 (52%), Gaps = 5/368 (1%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + +AL G+ T +Q + L DVL AQTG+GKT+AFGL L LLA+ + Sbjct: 12 TLSDALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLIDALLAQPGKP 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P + AL +APTREL Q+ L L T + V +GG S++R+ L G I+V Sbjct: 72 LPKTVK-ALVLAPTRELVNQIAESLRQLTEGTKLRVGTVVGGQSINRQINFLSRGTDILV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + K +++S + +VLDEAD+MLDLGF + I R+ ++FSAT+ Sbjct: 131 ATPGRLIDLMDRKSVDLSQTRQLVLDEADQMLDLGFIHALRKIAPKLGTPRQTMLFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + L+ Y + RV ++ + I + D+ + +LR +V Sbjct: 191 PKQMEELSAAYLTNPRRVQVSPPGKAADKITQSVHFLGKDDKPRKLREVLRQDLDALTLV 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ R K L F ++ G SQ +R A++ RDG V +ATDVAARGID Sbjct: 251 FSRTKHGAERLMKGLVADGFNAASIHGNKSQGQRDRAIKAFRDGDINVLVATDVAARGID 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFREANVS 366 +P + V++ +L P+N +HR GRT RAGR+G ++ F P ++ R+ +RL + + Sbjct: 311 IPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQIQRLMK-IEIP 369 Query: 367 VVWEPAPS 374 V AP+ Sbjct: 370 VASGEAPT 377 >gi|297582584|ref|YP_003698364.1| DEAD/DEAH box helicase domain-containing protein [Bacillus selenitireducens MLS10] gi|297141041|gb|ADH97798.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens MLS10] Length = 483 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 119/369 (32%), Positives = 203/369 (55%), Gaps = 6/369 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+E T VQ+ ++ + KDVLV++QTG+GKT ++ + + T+ E +R Sbjct: 15 IVRALNELNMTMPTDVQKQVIPLAMENKDVLVTSQTGTGKTASYAIPICDTVDWEENR-- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL ++PTRELAVQ+ ++ + + G V++++ +L+ H+VVG Sbjct: 73 ----PQALILSPTRELAVQIQEDITNIGRFRRIKATALYGQEPVNKQKLELKQKTHVVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI+ L ++ ++ +V+DEAD+MLD+GF D +E IL S PK+R +FSAT+ Sbjct: 129 TPGRVLDHIKKGTLMLNRIEHLVIDEADQMLDMGFIDQVEAILASLPKERTTSLFSATMR 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + ++ I E ID + V ++ + ++ + ++F Sbjct: 189 NEIRALAGRHMNAPDQIAIKQETVAADTIDQSVIHVTNKEKLQLLQDVTVVENPDSCLIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ SV L + ++ + G L Q+ER + ++ + G R IAT+VAARGID+ Sbjct: 249 CNTQESVDLLETSLNKEGYRARKIHGGLPQKERFSVMEAFKRGSFRYLIATNVAARGIDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + LVI+ ++ E+ +HR+GRTGRAG+ G ++ + + L R + + Sbjct: 309 DSVSLVINYDVPFEKESYVHRTGRTGRAGKAGKAITFVNNREKSAIRELERYTGIIIPLA 368 Query: 371 PAPSVEAIR 379 APS + ++ Sbjct: 369 KAPSPDEVK 377 >gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043] gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM 43043] Length = 562 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 200/365 (54%), Gaps = 16/365 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P++I AL+E G ++ +Q L L D++ A+TG+GKT+ FG+ + ++++ Sbjct: 20 FPVHPEII-SALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPMLNSVV 78 Query: 64 AENDRFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 A D A P ALA+APTRELAVQV +LE G+ V GG + + Sbjct: 79 APGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRHRGIRVLTVYGGRAYEPQVD 138 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G +VVGTPGRL D + L++S K VVLDEADEMLDLGF D+E ++ +P Sbjct: 139 ALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVVLDEADEMLDLGFLPDVETLMSLTPAS 198 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVN-IASENRQHSDID------YRAVLVALSDRD 232 R+ ++FSAT+ AI TLA+ Y + + EN + YRA + D+ Sbjct: 199 RQTMLFSATMPGAIVTLARRYMTQPTHIRAMGDENENAHTVKAVEQFVYRAHAL---DKV 255 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 + +L+ I+F T+ + ++ L E F A+ G+L Q R AL+ R+ Sbjct: 256 EMLSRMLQAKDRGLTIIFSRTKRTAAKVADELGERGFAAAAIHGDLGQGAREQALRAFRN 315 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 G+ V +ATDVAARGID+ ++ VI+ + + + LHR GRT RAG G++V FV + Sbjct: 316 GKVDVLVATDVAARGIDVDNVTHVINFQCPEDEKTYLHRIGRTARAGNTGVAVTFVDWDD 375 Query: 352 MQRRA 356 + R A Sbjct: 376 LHRWA 380 >gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14] Length = 684 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 199/377 (52%), Gaps = 10/377 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + G +L VQ + ++ D++ ++TGSGKT+AFGL + LL+ R Sbjct: 96 LKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEKLLS---RSGSRRN 152 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P AL + PTRELA QV EL L + V +GGV H + ++ G IVVGTPGR Sbjct: 153 PGALILLPTRELATQVSSELSRLSPQLKTVT--IVGGVPYHSQESRIRAGVDIVVGTPGR 210 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + D K L+ ++ VLDEAD ML GF++ +E IL P+ R+ +M+SAT +T Sbjct: 211 IMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILSWVPETRQCVMWSATFPKWVT 270 Query: 195 TLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVFC 251 +L K Y KDAV +++ H + + ++A+ V + R A+ IL +Y ++VF Sbjct: 271 SLTKKYLKDAVTIDLVGSEEAHVPTTVSHKAINVPSNYRVVALQRILEKYASQGQSLVFT 330 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L V AL G+LSQ R++ +Q R G + TD+AARG+D+ Sbjct: 331 ETKHEANEIANGLEG--CNVQALHGDLSQGVRASTMQNFRKGLVKTLACTDIAARGLDIA 388 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 +++LV+H L ++ EN +HR+GRTGRAG+ G S+ R + L + Sbjct: 389 NVDLVVHYRLPNDRENFVHRAGRTGRAGKTGTSIVFFENQEYRDIKDLENRFKIQFAHAA 448 Query: 372 APSVEAIRERDAQRILQ 388 P + R+ + + + Sbjct: 449 TPDADDFRDTKVKEVTK 465 >gi|260576594|ref|ZP_05844582.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] gi|259021198|gb|EEW24506.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2] Length = 453 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 182/344 (52%), Gaps = 2/344 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + + L + GY T +Q + ++ +D++ AQTG+GKT AFGL L LL + Sbjct: 13 LAKGLEKAGYTKPTPIQLQAIPLIMQGRDLMGLAQTGTGKTAAFGLPLLHRLLDIGHPPA 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P S AL +APTREL Q+ LE T V V GG S+ R+ L GA ++V Sbjct: 73 PRSV-RALIMAPTRELVSQISEALEVFTKGTAVKVVTVTGGASLFRQSERLARGADVLVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L + H +VLDEAD+MLD+GF ++ I P KR+ L+FSAT+ Sbjct: 132 TPGRLIDLLDRNALTLEHCGYLVLDEADQMLDMGFIHALKKIAKHLPLKRQTLLFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ Y +D V+V +A + I D+ + L+ H + A+VF Sbjct: 192 KLIEDLAQTYLRDPVKVQVAPPGKPIEAIVQGVHYTPQGDKARLLEEYLKTHPGEMALVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K+L F+ ++ G SQ +R L R+G V +ATDVAARGID+ Sbjct: 252 GRTKHGSEKLMKLLVAWGFKAGSIHGNKSQNQRERTLSEFREGALDVLVATDVAARGIDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + V + ++ + PEN +HR GRT RAG G +V F P M+ Sbjct: 312 SGVRHVYNYDMPNVPENYVHRIGRTARAGADGKAVAFCAPAEME 355 >gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus Py2] Length = 537 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 194/365 (53%), Gaps = 10/365 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L +DVL AQTG+GKT AF L + + L E+ R + A Sbjct: 15 AVADTGYTQPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLTLL--EHGR-ARAR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVEENFTRYGKNHKLNVALLIGGVSFGDQDSKLLRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ L +S ++ +V+DEAD MLD+GF DIE + P R+ L FSAT+ P I Sbjct: 132 RLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFSATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAI 248 L + + VRV ++ + + + +LVA D +LR G +N I Sbjct: 192 QRLVSQFLSNPVRVEVSKPASTAATVTH--MLVASGREDYDKREVLRELIRNCDGLQNGI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ + V+ + L +H F VAL G++ Q R AL R G A + +A+DVAARG+ Sbjct: 250 IFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDQFRSGEATLLVASDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+P + V + ++ + E+ +HR GRTGRAGR G + ++ + + + +V Sbjct: 310 DIPAVSHVFNYDVPHHSEDYVHRVGRTGRAGRAGTAYTLVTHTDAKSVTAIEKLIGNAVP 369 Query: 369 WEPAP 373 W AP Sbjct: 370 WHGAP 374 >gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1] gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1] Length = 467 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 195/361 (54%), Gaps = 7/361 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +Q + L+ +DVL AQTG+GKT +F L + + L E R + A Sbjct: 19 KAVKSVGYTVPTPIQSGTIPHVLQRRDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARA 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV + + VA+ IGGVS ++ R L+ G +++ TP Sbjct: 76 RMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEQQDRKLERGVDVLIATP 135 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L + ++ +V+DEAD MLD+GF +IE I +P R+ L FSAT++P Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPEIERICKLTPFTRQTLFFSATMAPE 195 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHG--AKNAI 248 IT L K + V V + + S I R V D+ + ++ G KNAI Sbjct: 196 ITKLTKQFLHSPVTVEVTKASSTASTITQRLVKSGNKAWDKRAVLRELIHNEGDKLKNAI 255 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ + +S + L H F V AL G++ Q R + L +D + + +A+DVAARG+ Sbjct: 256 IFCNRKRDISELLRSLIRHNFSVGALHGDMDQYSRMSTLADFKDNKITLLVASDVAARGL 315 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+P + V + ++ ++ E+ +HR GRTGRA R G + ++ + Q+ + +N + Sbjct: 316 DIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKTDQKYINAIEEISNEKIE 375 Query: 369 W 369 W Sbjct: 376 W 376 >gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18] gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1] Length = 462 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL +APTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD+ + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDIPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis 053442] gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis 053442] Length = 462 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635] gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635] Length = 506 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 69 -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAAQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM 44985] Length = 548 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 139/393 (35%), Positives = 217/393 (55%), Gaps = 20/393 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ +A+ E GY + +Q + L +DV+ A TG+GKT AF L + S + + Sbjct: 18 PSVL-KAVQEVGYETPSPIQAKTIPALLNGQDVVGLAATGTGKTAAFALPVLSRIDPKLR 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R P AL +APTRELA+QV +K V VC+ GG S + + L G+ Sbjct: 77 R------PQALVLAPTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPVQLQALARGSQ 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++VGTPGR+ DH+ L + LK +VLDEADEML +GF++D+E +L S+ + +++ +FS Sbjct: 131 VIVGTPGRVVDHLERGTLKLGDLKFLVLDEADEMLKMGFQEDVERVLASASQDKQVALFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ AI ++K Y +D V V + + +I+ R LVA + + + IL Sbjct: 191 ATMPGAIRKISKTYLRDPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEQFSA 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + + L F L+G+++Q R + +R G+ + +ATDVAAR Sbjct: 251 MIVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILVATDVAAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREA 363 G+D+ + V + ++ + E+ +HR GRTGRAGR G+S +FV P ++M ER R+A Sbjct: 311 GLDVERITHVFNYDVPHDTESYVHRIGRTGRAGRAGVSYLFVTPRERSMIGAIERATRQA 370 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396 + P P+V + +A RI + F DSI Sbjct: 371 ---LTEAPLPTVADV---NAGRIAK---FRDSI 394 >gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB 48] gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB 48] Length = 501 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 207/389 (53%), Gaps = 19/389 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+++ GY T++QE + L DVL AQTG+GKT AF L + L + R Sbjct: 13 ILKAVADTGYDTPTAIQEQAIPIALIGLDVLGIAQTGTGKTAAFTLPMIEKLASGRSR-- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P A+ +APTRELA QV E + A+ IGGVS+ + L G +++ Sbjct: 71 -ARMPRAIVLAPTRELADQVAEAFEKYAKYCKLNWALLIGGVSMADQVAKLDKGVDVLIA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSAT+ Sbjct: 130 TPGRLLDLFERSKVMLNGVQLMVVDEADRMLDMGFIPDIERIFKLTPPSRQTLFFSATMP 189 Query: 191 PAITTLAKNYQKDAVRVNI---ASENRQHSDIDYR-----AVLVALSDRDNAIVNILRYH 242 P IT L + + K+ VR+ + A+ N + YR + L+A + R A+ ++ Sbjct: 190 PEITRLTEQFLKNPVRIEVSRPATTNENITQYVYRVPSGDSKLLAKAKR-LALRTLIGQL 248 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 N IVFC+ + V K L+ H F + G+L Q R L R G ++ +A+D Sbjct: 249 EINNGIVFCNRKTDVDIVAKSLSVHGFNAAPIHGDLDQSLRMKTLDAFRSGELKLLVASD 308 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF-- 360 VAARG+D+P + V + ++ + ++ +HR GRTGRAGR G + ++ N ++ +++ Sbjct: 309 VAARGLDIPSVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAYLILAPNDEKNYDKVLKL 368 Query: 361 --REAN---VSVVWEPAPSVEAIRERDAQ 384 +E N + V W P RE+ A+ Sbjct: 369 IKKEPNTLELDVDWSPLADARPEREKPAR 397 >gi|118586395|ref|ZP_01543844.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163] gi|118433182|gb|EAV39899.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163] Length = 509 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 186/336 (55%), Gaps = 7/336 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY T +QE + ++ DV+ AQTG+GKT AFGL + + +N + Sbjct: 3 AVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQ--- 59 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL I+PTRELA+Q EL L + V V GG + R+ L+ I+VGTPG Sbjct: 60 ---ALVISPTRELAMQTEEELNKLGSDKHVKTQVIFGGYDIRRQIHALKEHPQILVGTPG 116 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ ++ +K +V+DEADEML++GF +DIE I+ +P R+ L+FSAT+ I Sbjct: 117 RLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDI 176 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + +D V+IAS+ +D V ++ +A+ + + AIVF T Sbjct: 177 KKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPELAIVFGRT 236 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V TK L ++ + G+L Q R L+ + G + +ATDVAARG+D+ + Sbjct: 237 KRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDISGV 296 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348 V + ++ +PE+ +HR GRTGRAG G+SV FV+ Sbjct: 297 THVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVV 332 >gi|85859652|ref|YP_461854.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB] gi|85722743|gb|ABC77686.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB] Length = 413 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 198/370 (53%), Gaps = 6/370 (1%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN I + I + L++ G+ T +Q + ++ +DVL AQTG+GKT AF + L Sbjct: 3 FENYTISEAIKQNLAQLGFRRPTDIQFKSIPSIMKGEDVLAIAQTGTGKTAAFAIPLIDR 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + E + + PTRELA+Q+G L T V IGGV + R L Sbjct: 63 IHREKSS-KRVFGIKCIVLVPTRELAMQIGEVFAGLAKHTRVKTFPLIGGVEQDEQIRKL 121 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 Q+G I++ TPGR+ D I + + ++ +VLDEAD MLDLGF +DI+F+ KK + Sbjct: 122 QDGIDILIATPGRMFDLIHQGHIRLDRIETLVLDEADHMLDLGFIEDIKFVKRMLHKKHQ 181 Query: 182 MLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 L FSATI+P I LA + K A+R+ I+ E+ +++ + + V + D+ + L+ Sbjct: 182 TLFFSATINPEIKKLAFSQVKGTAIRIQISPEDPVSANVTHAVMFVEMDDKRFFLERFLK 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + IVF TR R + + + + GE Q ER++ ++ ++G + IA Sbjct: 242 ENQESKVIVFVRTRIRAERVARAMERVGLHSLTIHGEKDQAERTSVMRKFKEGECNLLIA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359 TDV+ARGID+PD+ VI+ +L EN +HR GRTGR KG+++ + + R + + Sbjct: 302 TDVSARGIDIPDVNYVINYDLPEKAENYVHRVGRTGRGDNKGIALSFCSSDEKMRLQEIQ 361 Query: 360 -FREANVSVV 368 F + VV Sbjct: 362 QFLNKEIEVV 371 >gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain protein [Nitratifractor salsuginis DSM 16511] gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis DSM 16511] Length = 462 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 187/346 (54%), Gaps = 10/346 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ + +Q+ + L +D++ A TG+GKT AFGL + DR + AL Sbjct: 20 GFKEPSPIQKEAIPIILEGRDLVGQAHTGTGKTAAFGLPIL-------DRIARGEIERAL 72 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 I PTRELA QV EL L G+ GGV R+ + G IVV TPGRL D Sbjct: 73 VITPTRELATQVSDELYHLGRFAGIRTLAVYGGVGYGRQIALIHRGVQIVVATPGRLKDL 132 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 + +++ + + VVLDEADEMLD+GF DD+ I + P+ R+ L+FSAT+ I LA Sbjct: 133 YQKGKIDVFNPEVVVLDEADEMLDMGFLDDVREIFEYIPQNRQTLLFSATMPDPIKELAD 192 Query: 199 N--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 Y+ + + V + E ++ DI+ ++ + RD AIV +L A++FC + Sbjct: 193 TLLYEPEFISV-VGEETTKNVDIEQYYYVINENQRDEAIVRLLETENYDKALIFCRMKRE 251 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 V R + L F L G++ Q ER ++ R G R+ IATDVAARG+D+ ++ V Sbjct: 252 VDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILIATDVAARGLDIKNVTHV 311 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 + + +P++ +HR GRTGRAG++G ++ + R +R+ +E Sbjct: 312 FNYHIPFDPQSYVHRIGRTGRAGKRGRAITLASTEEFRELQRIRKE 357 >gi|317128977|ref|YP_004095259.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522] gi|315473925|gb|ADU30528.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 482 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/392 (32%), Positives = 211/392 (53%), Gaps = 18/392 (4%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 VI +A+ Y LT VQ+ +L L KD++V + TGSGKT AF + + + + + Sbjct: 14 VINKAIHALNYYELTDVQKEVLPLSLENKDLIVKSPTGSGKTAAFAIPICEQVTWDEN-- 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 +P AL + PTRELA QV E + + G R++ +L+ H+VV Sbjct: 72 ----SPQALVLTPTRELAAQVKEEFMNIGRLKRIKALAIYGKQPFDRQKLELKQKTHVVV 127 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-MFSAT 188 GTPGRL DH++ L ++ +K +V+DEADEM + GF D ++ IL ++ ++SAT Sbjct: 128 GTPGRLLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVTSIYSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 IS A+ ++ + + +++NI + I VLV + + +AI ++ + I Sbjct: 188 ISEAVEHISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFSAIQDVTIVENPDSCI 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ +V + K L + + + G L Q+ER + + ++G+ R + T++AARGI Sbjct: 248 VFCETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYLVTTNLAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAER-LFREANVS 366 D+ + LVI+ ++ + E +HR+GRTGRAG KG ++ F+ P ER LFRE Sbjct: 308 DIESISLVINYDMPLDKEVYVHRTGRTGRAGNKGKAITFITPD------ERILFREIEDY 361 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398 + + P + ER+ +R+ P F D ++ Sbjct: 362 IGYA-IPPMNIPSEREVERL--KPAFEDKMRN 390 >gi|170782265|ref|YP_001710598.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169156834|emb|CAQ02001.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 520 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 189/345 (54%), Gaps = 7/345 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + + +AL++ G + +QE + L +D++ A+TG+GKT FGL L L Sbjct: 7 NIDEDMVQALADHGILEPFPIQEQTIPLALSGQDIIGQAKTGTGKTFGFGLPLIQRL--- 63 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P AL + PTRELAVQV +L+ V GG + + L+ GA Sbjct: 64 --GLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTVVSIYGGKAYEGQIEQLKAGA 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGRL D + + L++ +++ +VLDEAD+MLDLGF DIE + +P R ++F Sbjct: 122 QIVVGTPGRLLDLVGQRLLSLKYVREMVLDEADKMLDLGFLSDIEKLFAQTPAVRHTMLF 181 Query: 186 SATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 SAT+ I LA+ + +R E ++I + D+D I IL+ G Sbjct: 182 SATMPGPIVALARRFMTKPIHIRATDPDEGLMQANIRHLVYRAHNMDKDEVIGRILQAEG 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F T+ + +R + L + F A+ G+L+Q++R A+ + G+ + IATDV Sbjct: 242 RGKTVIFTRTKRAAARLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILIATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ D+ VI+ + + + LHR GRTGRAG+ G++V + Sbjct: 302 AARGIDVLDVTHVINHTIPEDDKAYLHRVGRTGRAGKTGIAVTFV 346 >gi|85703303|ref|ZP_01034407.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217] gi|85672231|gb|EAQ27088.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217] Length = 515 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/349 (34%), Positives = 188/349 (53%), Gaps = 13/349 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L+ +DVL AQTG+GKT +F L + S L Sbjct: 11 PKVL-KAIEEAGYETPTPIQAEAIPHALQGRDVLGIAQTGTGKTASFTLPMLSLLSRGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY------ 241 T++P I + + + RV +A + I+ V+ + R+NA R Sbjct: 187 TMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPTRRENADSEKRRLLRALID 246 Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 NAI+FC+ + V +K L ++ + + G+L Q +R+ L R G R Sbjct: 247 REGEACSNAIIFCNRKVDVDVVSKSLIKYGYDAAPIHGDLEQSQRTRTLDGFRAGTLRFL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 IA+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G ++ + Sbjct: 307 IASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRAGKALMI 355 >gi|291614807|ref|YP_003524964.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] gi|291584919|gb|ADE12577.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus ES-1] Length = 466 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 138/394 (35%), Positives = 213/394 (54%), Gaps = 28/394 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL------- 63 I A+SERGY T +Q + L+ D++ AQTG+GKT F L L L+ Sbjct: 12 IARAVSERGYTEPTPIQAQAIPVILKGGDLMGGAQTGTGKTAGFTLPLLQRLMEKPISGQ 71 Query: 64 ------------AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI- 109 E ++ S AP+ AL + PTRELA QV E LY K + ++ + Sbjct: 72 PSPQSSPASGRGGEREKHSSIRAPIRALVLTPTRELAAQV-EESVRLYGKYLPLKSMMMF 130 Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169 GGV+++ + + L I+V TPGRL DH++ K +++SH++ +VLDEAD MLD+GF DI Sbjct: 131 GGVNINPQIKQLHGRVDILVATPGRLLDHLQQKTVDLSHVEILVLDEADRMLDMGFIRDI 190 Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229 + +L PK+R+ L+FSAT S I LA + + +A N+ + I+ R V Sbjct: 191 KRVLAVLPKQRQNLLFSATFSDEIKLLADGLLNNPALIEVARRNQANELIEQRVYPVDRE 250 Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 + N + ++++ H +VF T+ + L + +A+ G SQ R+ AL Sbjct: 251 RKRNLLTHLIKDHNWFQVLVFTRTKHGANNLADHLNKEGIPAMAIHGNKSQAARTRALAE 310 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VF 346 + + +V +ATD+AARGID+ +L V++ EL + PE+ +HR GRTGRAG +G + V Sbjct: 311 FKTAKLQVLVATDIAARGIDISELPHVVNYELPNVPEDYVHRIGRTGRAGSEGEASSLVC 370 Query: 347 VIPQNMQRRAERLF-REANVSVV--WEPAPSVEA 377 + + + ERL RE V V +EP P ++A Sbjct: 371 IDEKKLLHDIERLIKREIPVVQVPGFEPDPRIKA 404 >gi|15677233|ref|NP_274386.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58] gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58] gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha710] gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis H44/76] gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis OX99.30304] gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M0579] gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis CU385] gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis H44/76] gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240149] gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis NZ-05/33] Length = 462 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|315297174|gb|EFU56454.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3] Length = 432 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 12/365 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +TSVQ A L L KDV V A+TGSGKT AFGL L + + F L + P Sbjct: 1 MTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DVSLFQTQ----GLVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL DH++ Sbjct: 55 TRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI ++ Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ LELV++ E Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 L+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ +I Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIV 351 Query: 380 ERDAQ 384 +A+ Sbjct: 352 PLEAE 356 >gi|295676852|ref|YP_003605376.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] gi|295436695|gb|ADG15865.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] Length = 544 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 138/390 (35%), Positives = 203/390 (52%), Gaps = 38/390 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------- 63 AL+ GY + T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 50 ALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQKAQASQP 109 Query: 64 --------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108 R P + P L + PTRELA+QV G+ L+ L + Sbjct: 110 REPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 163 Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 +GGV+ ++ L I+V TPGRL DH+ +++S L+ +VLDEAD MLD+GF DD Sbjct: 164 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIDD 223 Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 I+ I+ +P R+ ++FSAT+ I +L KD R+ I Q ++I V Sbjct: 224 IDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNISQTVHYVDD 283 Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 D +D + ++LR G AIVF +T+ + LA+ F+ AL G+L Q R+ + Sbjct: 284 RDHKDRLLDHLLRADGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTI 343 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 + +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR G++V + Sbjct: 344 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 403 Query: 348 I---PQNMQRRAERLFR---EANVSVVWEP 371 + Q +R ER R NV +EP Sbjct: 404 VHHAEQGALKRIERFVRTPLPVNVVEGFEP 433 >gi|171909846|ref|ZP_02925316.1| DEAD/DEAH box helicase domain protein [Verrucomicrobium spinosum DSM 4136] Length = 377 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 199/372 (53%), Gaps = 8/372 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57 MK F++ I + + + L E G T++Q+ + L + D++ AQTG+GKT AFGL Sbjct: 1 MKTFQDLGISEALVQGLEELGITKPTAIQQQTIPHVLAHRGDLIAQAQTGTGKTAAFGLP 60 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115 + ++ + + A L +APTRELA Q+G++L + + V GG + Sbjct: 61 MLERIIPHAAK-AKAGQIDGLIVAPTRELAKQIGKQLFKFTKHVPDKIFVETITGGDDMD 119 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + L+ HIVVGTPGRL D ++ + LN+S ++ +VLDEADEML LGF+ ++E Sbjct: 120 LQISRLRRPTHIVVGTPGRLMDLVQREALNLSKVRYLVLDEADEMLSLGFKKELEQFFQL 179 Query: 176 SPKKRR-MLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 + K R+ +FSATI I L + Y + +A R+ I + + DI +R ++ +++ + Sbjct: 180 TAKSRKNTWLFSATIPEGIQELIEGYMEPEAHRITIDKAHVVNRDITHRYIICDRTEKLD 239 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 I L ++FC T A K L F V L G+LSQ ER ++ + Sbjct: 240 RISEFLEDRSEDRGVIFCRTIAGSINLAKELGTRNFSVGVLHGDLSQLERDKVMRAFKKE 299 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 R + + TDV+ARGID+ L VIH +L E HRSGRTGRAGRKG+S+ I + Sbjct: 300 RLQYLVTTDVSARGIDVVGLAFVIHHQLPEQTEYYTHRSGRTGRAGRKGLSLAFIEPKEK 359 Query: 354 RRAERLFREANV 365 RL E V Sbjct: 360 SAITRLENELGV 371 >gi|217962948|ref|YP_002341526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|229142204|ref|ZP_04270728.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26] gi|217066069|gb|ACJ80319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|228641222|gb|EEK97529.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26] Length = 481 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 118/365 (32%), Positives = 193/365 (52%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P R ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I + I++ ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|15828540|ref|NP_325900.1| ATP-dependent RNA helicase [Mycoplasma pulmonis UAB CTIP] gi|14089482|emb|CAC13242.1| ATP-DEPENDENT RNA HELICASE [Mycoplasma pulmonis] Length = 480 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 187/340 (55%), Gaps = 6/340 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I ++L E G+ T +QEA+L KD++ AQTG+GKT AF + + S L Sbjct: 7 NIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSNLDCS 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R L IAPTRELA Q+ +L L T +A+ +GGVS +++ L +G Sbjct: 67 INRIQ------HLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSYEKQKAALNSGV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +IVV TPGRL D + +++SH+K LDEADE+L +GF ++I I++ PKKR+ F Sbjct: 121 NIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQNFFF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 +AT L++ +A ++++S ID V+V+ ++ +V L + Sbjct: 181 TATFDEKTKKLSQEITNEAKMISMSSGLETTEKIDQNFVVVSEEEKLITLVKFLDFKKPT 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++F T+ V L E F V + G++ Q++R++ L +D + + +ATDV A Sbjct: 241 ASVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIVATDVMA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ ++LV + +L E HR GRTGR R G ++ Sbjct: 301 RGIDVSHVDLVFNFDLPEEIEYYTHRIGRTGRGTRIGQAI 340 >gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus TCH130] gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus TCH130] Length = 517 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 26 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGK------- 78 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 79 QGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 138 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 139 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 198 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 199 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 258 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 259 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 318 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 319 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 360 >gi|46581710|ref|YP_012518.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str. Hildenborough] gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio vulgaris str. Hildenborough] gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1] Length = 532 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 162/520 (31%), Positives = 256/520 (49%), Gaps = 37/520 (7%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F+++P + + +A+ E G+ + +Q + L +DV+ AQTG+GKT AFGL L Sbjct: 7 FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120 + A + AL + PTRELA+QV L L GV + GG + + Sbjct: 67 IDAADRSVQ------ALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GA +VVGTPGR+ DHI L + ++ VLDEADEMLD+GFR+DIE IL P+ Sbjct: 121 LRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWV 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + FSAT+ I LA+ + ++ + + ++ + V R +A+ I Sbjct: 181 QSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFD 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + + AIVF +T+ V L + AL G+L+Q +R + R G V +A Sbjct: 241 AYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARG+D+ D++ VI+ +L ++PE +HR GRTGRAGR G + + + Sbjct: 301 TDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQ 360 Query: 361 REANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAK-HDPEKIA 417 R + P+ +A R R Q + + L S + +V+ L+A+ DP ++A Sbjct: 361 RVTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPTQLA 420 Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL--SVGS 475 A LR ++ RDR + G + + G+ L +VG Sbjct: 421 ATLLR----------------MIMQRDR-------IDLPGARQTDDIGTGRVRLFFNVGR 457 Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515 + + R L+ + +GI+ +SIG+I + +FVEV A Sbjct: 458 RMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDA 497 >gi|165869135|ref|ZP_02213795.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167641387|ref|ZP_02399638.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|170704569|ref|ZP_02895035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|177649201|ref|ZP_02932203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190565289|ref|ZP_03018209.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|229603661|ref|YP_002866798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] gi|254685050|ref|ZP_05148910.1| ATP-dependent RNA helicase [Bacillus anthracis str. CNEVA-9066] gi|254722456|ref|ZP_05184244.1| ATP-dependent RNA helicase [Bacillus anthracis str. A1055] gi|254737496|ref|ZP_05195199.1| ATP-dependent RNA helicase [Bacillus anthracis str. Western North America USA6153] gi|254743317|ref|ZP_05201002.1| ATP-dependent RNA helicase [Bacillus anthracis str. Kruger B] gi|254751811|ref|ZP_05203848.1| ATP-dependent RNA helicase [Bacillus anthracis str. Vollum] gi|254760330|ref|ZP_05212354.1| ATP-dependent RNA helicase [Bacillus anthracis str. Australia 94] gi|164715861|gb|EDR21378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0488] gi|167510664|gb|EDR86059.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0193] gi|170130370|gb|EDS99231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0389] gi|172084275|gb|EDT69333.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0174] gi|190563316|gb|EDV17281.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis Tsiankovskii-I] gi|229268069|gb|ACQ49706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0248] Length = 447 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 9 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 61 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 62 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 122 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSATI I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 182 FSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 242 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 302 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 >gi|121606431|ref|YP_983760.1| ATP-dependent RNA helicase DbpA [Polaromonas naphthalenivorans CJ2] gi|120595400|gb|ABM38839.1| ATP-dependent RNA helicase DbpA [Polaromonas naphthalenivorans CJ2] Length = 467 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/345 (37%), Positives = 204/345 (59%), Gaps = 12/345 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + L++ GY ++T +Q A L L KD++ A+TGSGKT AF LAL + L A Sbjct: 12 SLPAHVLANLTQLGYTSMTPIQAAALPVALLGKDLIAQAKTGSGKTAAFALALLANLNAR 71 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124 RF A A+ + PTRELA QV E+ L A+ + V GGV++ + L++G Sbjct: 72 --RF----AIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRNQIASLEHG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 AHIVVGTPGR+ DH+ L+++ + +VLDEAD MLD+GF DDI + PK+R+ L+ Sbjct: 126 AHIVVGTPGRIMDHLGRGNLDLAAMNTLVLDEADRMLDMGFFDDIATVAKQCPKERQTLL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILR 240 FSAT I +++ + K+ V + +++ + S I R V +D D +A+ +L Sbjct: 186 FSATYPEGIAKISQQFMKNPQTVTVQAQH-EKSKIRQRWYQVEDTDHDEARLDAVARVLN 244 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 ++ + + FC+T++ ++L + F +AL GEL Q+ER L + V +A Sbjct: 245 HYRPVSTLAFCNTKSQCRALVQLLKDKGFIALALYGELEQRERDQVLVQFANRSCSVLVA 304 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+ LE+VI+ +++ + E +HR GRTGRA +G ++ Sbjct: 305 TDVAARGLDISQLEMVINVDVTPDSEIHIHRIGRTGRADEEGWAI 349 >gi|218768385|ref|YP_002342897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491] gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491] gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE 2594] Length = 462 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 199/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ + L+ ++LDEAD MLD+GF DDIE I++++P+ R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPEDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAD 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056] gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056] Length = 372 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 188/345 (54%), Gaps = 3/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY + T +Q + L KD+L AQTG+GKT AF + + L A Sbjct: 7 NITEPILKAIEEKGYTSPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQHLQAG 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R A L + PTRELA+Q+ ++ T V V GGV+ + L G Sbjct: 67 KERDKSIKA---LILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHKGV 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + + + ++ VLDEAD MLD+GF DI+ +L PK+++ L F Sbjct: 124 DILVATPGRLLDLMNQGYIRLDSVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLFF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L + K V++ I ++ I+ V ++ +++IL + Sbjct: 184 SATMPDTIIALTNSLLKQPVKIAITPKSSTVDTIEQTVYFVEKKEKSKLLISILHKAEGQ 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + R +VL++ A+ G SQ R +AL+ + G+ RV IATD+AA Sbjct: 244 SVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIATDIAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RGID+ +L LVI+ +L PE +HR GRTGRAG G ++ Q Sbjct: 304 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSQ 348 >gi|86147794|ref|ZP_01066101.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp. MED222] gi|85834432|gb|EAQ52583.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp. MED222] Length = 412 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 183/325 (56%), Gaps = 6/325 (1%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q+A++ + EKDVL AQTGSGKT+AFGL L +++ + + A+ I PT Sbjct: 24 TEIQQAVIPTIIAEKDVLALAQTGSGKTLAFGLPLLNSIKHDVNELQ------AIIIVPT 77 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA QV + LE + + GGV + +++ L +V+ TPGRL I+ Sbjct: 78 RELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLLEKPQLVIATPGRLHAVIQENK 137 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L ++ K+++LDEAD +LD+GF D++ I+ + PKK + L+FSAT+ + + + + Sbjct: 138 LELTQCKSLILDEADRLLDMGFWPDVQTIISALPKKHQTLLFSATLPKELISQTEALLVN 197 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 V+V EN + I+ LV + A++ +L H +VF + + TK Sbjct: 198 PVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQHAWSQVLVFIGAKDNADALTKR 257 Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323 L++ V AL G SQ+ER AL+ ++G+ RV IATDV ARGI + L +VI+ +L S Sbjct: 258 LSKAKISVNALHGNKSQEEREQALESFKNGKTRVLIATDVMARGIHIDQLPVVINFDLPS 317 Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348 + +HR GRT RAG G ++ ++ Sbjct: 318 HSATYVHRVGRTARAGSTGSAISLV 342 >gi|240115845|ref|ZP_04729907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18] gi|260440339|ref|ZP_05794155.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2] gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 462 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL +APTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD+ + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|305667304|ref|YP_003863591.1| DEAD box family ATP-dependent RNA helicase [Maribacter sp. HTCC2170] gi|88709351|gb|EAR01584.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Maribacter sp. HTCC2170] Length = 603 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/347 (35%), Positives = 197/347 (56%), Gaps = 14/347 (4%) Query: 14 ALSERGYVNLTSVQEA---ILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 A+++ G+ + VQE IL D E D++ AQTG+GKT AFG L + +E Sbjct: 16 AVADMGFETPSEVQEKAIPILLED--ETDLVALAQTGTGKTAAFGFPLIQKIDSE----- 68 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + L ++PTREL +Q+ EL+ Y K+ VVA+ GG S+ + R ++ GA IV Sbjct: 69 -SRTTQGLILSPTRELCLQITNELKLYSKYEKSINVVAI-YGGASITEQARQIKRGAQIV 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGR+ D I +NI+ + +LDEADEML++GF +DI+ IL ++P ++ +FSAT Sbjct: 127 VATPGRMKDMISRGLVNITKIDYCILDEADEMLNMGFFEDIKDILSNTPDEKSTWLFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + ++ +AK + + + +N + + + +V DR A+ + + ++ Sbjct: 187 MPREVSVIAKKFMHSPKEITVGDKNSGATTVQHEYYVVGGRDRYPALKRLADTNPDIFSV 246 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ R + L E + AL G+LSQ +R + R + ++ +ATDVAARGI Sbjct: 247 VFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQMLVATDVAARGI 306 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 D+ D+ VI+ +L E HRSGRTGRAG+ G+S+ ++ ++ R+ Sbjct: 307 DVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSEMRK 353 >gi|313682403|ref|YP_004060141.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM 16994] gi|313155263|gb|ADR33941.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM 16994] Length = 417 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 192/340 (56%), Gaps = 4/340 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E GY + T +QE ++ L + D+L AQTGSGK+ +F L + L R Sbjct: 12 IVQAVKESGYTHPTPIQEKVIPLVLEKNDILARAQTGSGKSASFVLPILH--LWSLSRSE 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL + PTREL +QV + E + + V IGG S+ + +Q G I+ Sbjct: 70 GKGKIKALILTPTRELTLQVAQAFESMGKHLPIKPKVLSIIGGESIGDQLYAIQQGCDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V T GR D ++ K +N+SHL+ VLDEAD+MLDLGF +++E ILD+ P+KR+ L+FSAT Sbjct: 130 VATSGRFLDVLKKKQMNLSHLEFFVLDEADKMLDLGFAEELELILDAIPQKRQNLLFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 P + ++A + + V + +E +I R + V +R + ++L + + Sbjct: 190 YPPKMESIASKITPNPIHVTLEAEMPTVQNIHQRVIEVNPENRGPLLRHLLNTEKWEQVL 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF + + + ++ F + +G+L Q++R+ L+ + + R+ ATD+AARG+ Sbjct: 250 VFMANKRASDNIAAKFRKYGFSADSFNGDLLQEDRNYVLEQFKKKKIRILFATDIAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ D+ V++ +L +P + +HR GRTGRAG+ G+++ I Sbjct: 310 DIDDITCVVNFDLPRSPADYIHRIGRTGRAGKSGLAISFI 349 >gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231] gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231] Length = 437 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 120/337 (35%), Positives = 188/337 (55%), Gaps = 11/337 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAENDRFS 70 + E G+ + T VQ A L L+ DV AQTG+GK+ AF LA L +T +AEN Sbjct: 24 IKEAGFSHCTPVQAAALPVLLQHHDVAAQAQTGTGKSAAFLLATMHYLMTTPVAENK--- 80 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P AL +APTRELA+Q+ R+ E L TG+ A GG+ +R +L G I++G Sbjct: 81 --TGPWALILAPTRELALQIHRDAEKLGYFTGMRCAAIYGGIGYEPQRAELTQGVDIIIG 138 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188 TPGR+ D + + ++ +++ VVLDEAD M D+GF D+ ++L P R ++FSAT Sbjct: 139 TPGRIIDFYKQRVFSLDNIEVVVLDEADRMFDMGFITDVRYLLRRMPPAPDRINMLFSAT 198 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 +S + LA + + I E + VA +D+ ++ +LR A + Sbjct: 199 LSERVKELAYEHMNAPETIAIEPEQVTAEKVRQSLYHVASADKIGLLLGVLRQQDATRTL 258 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF +T+ R T L + F +SG++ Q++R LQ ++G+ + +ATDVAARG+ Sbjct: 259 VFVNTKRDAERVTAYLVGNGFDAEVISGDIPQKKREQLLQRFQEGKLPMLVATDVAARGL 318 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +PD+ +++ +L N E+ +HR GRT RAG G ++ Sbjct: 319 HIPDVSRIVNYDLPQNAEDYVHRIGRTARAGASGDAI 355 >gi|240103967|ref|YP_002960276.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus gammatolerans EJ3] gi|239911521|gb|ACS34412.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus gammatolerans EJ3] Length = 403 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 203/360 (56%), Gaps = 17/360 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 EA+ +G+ T +Q ++ L E D++ +QTG+GKT AF L + + P Sbjct: 25 EAVRRKGFEVPTDIQREVIPRLLEGEVDIIGQSQTGTGKTAAFALPIIEAI-------DP 77 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + A+ + PTRELA+QV E++ L K V V GG + + R L+ G H+VVG Sbjct: 78 NEKTVQAIILTPTRELALQVANEIKSLRGKKRVYVYAIYGGQPIGPQIRALERGVHVVVG 137 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ L++S ++ VLDEAD MLD+GF DDIE I+ +P+++R+LMFSAT+ Sbjct: 138 TPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPQEKRILMFSATMP 197 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAI 248 I LAK Y ++ + ++ + +D V V + + + +L ++G I Sbjct: 198 MGILLLAKKYMRNPEVILVSRDEVVPEMVDQEYVEVLPARKYEKLKEVLGEGFYG----I 253 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ ++ L F+ AL+G++SQ R ++G+ V +ATDVAARG+ Sbjct: 254 IFCHTKRETRELSERLRRDSFRADALNGDMSQAARERTFGRFKEGKINVLVATDVAARGL 313 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367 D+ ++ VI+ L N E +HR GRTGR G++G ++ F+ P + R + + R+A V V Sbjct: 314 DVREISHVINYSLPMNTEQYIHRIGRTGRMGKRGKAITFLKPGEIGRFRD-IARKAKVEV 372 >gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus TCH70] gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus TCH70] gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus TCH60] gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus MRSA177] Length = 517 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 26 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGK------- 78 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 79 QGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 138 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 139 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 198 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 199 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 258 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 259 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 318 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 319 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 360 >gi|226510036|ref|NP_001147911.1| ATP-dependent RNA helicase DDX23 [Zea mays] gi|195614524|gb|ACG29092.1| ATP-dependent RNA helicase DDX23 [Zea mays] Length = 736 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 192/358 (53%), Gaps = 20/358 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71 A+ + GY + +Q A + L+++DV+ A+TGSGKT AF L + S T L + Sbjct: 329 AIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENE 388 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G IV+ T Sbjct: 389 AEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQGFKIRQGCEIVIAT 448 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179 PGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 449 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 508 Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 R MFSAT+ PA+ LA+ Y ++ V V I + + I ++V S++ Sbjct: 509 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESEKMPR 568 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + IL G K AIVFC+T+ + K L + F+V L G SQ +R +L R+ R Sbjct: 569 LQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKSQDQREISLDGFRNRR 628 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 V +ATDVA RGID+PD+ VI+ E+ S+ + HR GRTGRAG+KG++ F+ +N Sbjct: 629 FNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGVATSFLTYEN 686 >gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453] Length = 559 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 125/339 (36%), Positives = 194/339 (57%), Gaps = 19/339 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E+G T VQ+ + + KDV+ A+TG+GKT+AF L + + P A Sbjct: 17 LKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPILQQI-------DPKRA 69 Query: 75 -PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL IAPTRELA+Q+ E + L A G+ + GG V ++ R L+ G H+++GT Sbjct: 70 YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKLEGGRHLIIGT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R L + +K +VLDEAD+ML +GF DD+E ++ + P +R+ ++FSAT+ Sbjct: 130 PGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDDVEALIHALPYRRQTMLFSATMPA 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDR--DNAIVNILRYHGAKN 246 + LA NY V + I + S I + V+V +DR +A+ ++ + Sbjct: 190 GVKQLAGNYMNQPVDIVI----KGASPIPLEQIQQVVVECTDRSKQDALRTMIEQYNPFL 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+FC T+ S L H +Q L G+LSQ +R ++ RD + ++ +ATDVAAR Sbjct: 246 AIIFCRTKRRASILNDALLAHGYQSDELHGDLSQAKREAVMKRFRDAKLQLLVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+D+ + V + ++ + E+ +HR GRTGRAG GM++ Sbjct: 306 GLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGNGMAI 344 >gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus MN8] gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus MN8] Length = 517 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 26 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGK------- 78 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 79 QGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 138 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 139 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 198 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 199 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 258 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 259 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 318 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 319 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 360 >gi|159469622|ref|XP_001692962.1| DEAD box RNA helicase [Chlamydomonas reinhardtii] gi|158277764|gb|EDP03531.1| DEAD box RNA helicase [Chlamydomonas reinhardtii] Length = 407 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 191/336 (56%), Gaps = 7/336 (2%) Query: 16 SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPASA 74 + R +V + +Q L +D++ A TGSGKT+ FGL + + A+ + Sbjct: 4 ATRNFVAPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRHIAAQREAGVVTGKG 63 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P A+ +APTRELA+Q+ LE +K GV GGV H + + L++G +VVGTPGR Sbjct: 64 PFAVVMAPTRELALQINEVLEEAGSKCGVRTVCVYGGVPKHPQIQALRSGVEVVVGTPGR 123 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + D + L ++ + VLDEAD MLDLGF I I++ + R+ LMFSAT A+ Sbjct: 124 MEDLLNDGALKLNQITYAVLDEADRMLDLGFEPHIRAIMNLTRADRQTLMFSATWPTAVQ 183 Query: 195 TLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNIL-RYHGAKN----AI 248 LA + V+V I S++ S I ++ RD ++++L +YHGAK I Sbjct: 184 KLAVAFLSHPVKVTIGSQDLAASHSITQHVEVIEPHARDGRLLDLLQQYHGAKGRKNRVI 243 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F + R ++L ++ A+ G++SQQ+R++A++ + G + IATDVAARG+ Sbjct: 244 IFVLYKKEAPRVEQLLTRKGWKAGAIHGDISQQQRTDAVEKFKSGAVPLLIATDVAARGL 303 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 D+PD+E+VI+ E+ +HR GRTGRAG+ G++ Sbjct: 304 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKTGVA 339 >gi|30262474|ref|NP_844851.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames] gi|47527766|ref|YP_019115.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|49185310|ref|YP_028562.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Sterne] gi|167632590|ref|ZP_02390917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|170687052|ref|ZP_02878271.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|227814717|ref|YP_002814726.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] gi|30257105|gb|AAP26337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Ames] gi|47502914|gb|AAT31590.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. 'Ames Ancestor'] gi|49179237|gb|AAT54613.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. Sterne] gi|167532888|gb|EDR95524.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0442] gi|170669103|gb|EDT19847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. A0465] gi|227002434|gb|ACP12177.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus anthracis str. CDC 684] Length = 450 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSATI I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1] gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1] Length = 484 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/342 (36%), Positives = 187/342 (54%), Gaps = 6/342 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + +AL +GY T +QE + P L +D+L AQTG+GKT AF L L ++R Sbjct: 11 QPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDRLREADNR 70 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P + L +APTREL Q+ + A G+ V +GG SV+++R L G I+ Sbjct: 71 I-PFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDRNKLHRGTDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D I K N+ ++ +VLDEAD+MLDLGF + I PK+R+ L FSAT Sbjct: 130 IATPGRLLDLIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQTLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL----RYHGA 244 + AI L Y + V+V++ E+ ID +V ++ + + IL + G Sbjct: 190 MPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLFMVQQDEKQSLLELILSGRHKVPGE 249 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F T+ R K L+ A+ G SQ +R AL R G+ + +ATDV Sbjct: 250 FERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRGKTMILVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + V++ EL + PE +HR GRT RAG+ G+++ Sbjct: 310 AARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAI 351 >gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140] Length = 462 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL +APTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD+ + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC 23834] gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC 23834] Length = 431 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 185/340 (54%), Gaps = 17/340 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY+ T +Q L + +D++ SAQTGSGKT AF L + +D+ Sbjct: 17 ALRSAGYIEPTPIQVQALPAAIDGRDIMASAQTGSGKTAAFLLPSLQRITRRSDK--SGK 74 Query: 74 APLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 P L + PTRELA QV + ++WL T +GG S + + L Sbjct: 75 GPRILVLTPTRELAAQVEKNAKIYAQNMKWLRTVT------LVGGSSFGFQIKALAKPID 128 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VV TPGRL DH+R ++ L+ +VLDEAD MLD+GF DDIE I+ ++P+ R+ L+FS Sbjct: 129 LVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPESRQTLLFS 188 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAK 245 AT A+ LA+ K+ + I E+ Q ID + + N +++ ILR Sbjct: 189 ATWDGAVGKLARRLTKNPEVIEIEREDNQ-GKIDEQLFYCDDKNHKNRLLDHILRDANID 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F ST+A + L E F L G++ Q R+ L +R GR +V +ATDVAA Sbjct: 248 QCIIFTSTKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMDLRKGRIKVLVATDVAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+P + VI+ +L E+ +HR GRTGRAGR G+++ Sbjct: 308 RGIDVPSITHVINYDLPKQAEDYVHRIGRTGRAGRHGLAL 347 >gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep ecotype'] gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep ecotype'] Length = 480 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 196/346 (56%), Gaps = 11/346 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ +RG+ + +QE + L KDVL +AQTG+GKT FGL + L++ + S A Sbjct: 14 KAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQRLMS-GPKVS-A 71 Query: 73 SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + AL + PTRELA QV + E+L KT AV GGV ++ + L+ G ++ Sbjct: 72 NNVRALILTPTRELAAQVEESICAFSEFLPLKT----AVVFGGVGINPQMIKLRKGVDVL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D + + S L+ +VLDEAD MLD+GF DI+ +L P+ R+ L+FSAT Sbjct: 128 IATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPEDRQSLLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S ITTLAK ++ V ++ A N ++ V + S + A++ +++ + + Sbjct: 188 FSDEITTLAKTITRNPVSISTAPANTTVDAVEQHLVTIDKSKKTTALICLIKQQKWEQVL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L A+ G SQ R+ AL ++G +V +ATD+AARGI Sbjct: 248 VFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGDIKVLVATDIAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 D+ +L +V++ +L + + +HR GRTGRAG G + FV + +Q Sbjct: 308 DISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVSAEELQ 353 >gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola ACS-139-V-Col8] gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola ACS-139-V-Col8] Length = 526 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 122/345 (35%), Positives = 197/345 (57%), Gaps = 8/345 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + E L E G+ T +Q+ + L+ +D++ AQTG+GKT AFGL + L + Sbjct: 7 NLKTELIETLDELGFEEPTPIQQQAIPFVLQGRDLVGQAQTGTGKTAAFGLPMLQGLDTD 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-G 124 + A AL IAPTRELA+QV EL L V GG S+ ++ +Q Sbjct: 67 H------RALQALIIAPTRELAIQVHDELYSLSKGLKTKVYAVYGGYSIGKQIDRIQKLK 120 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 ++VGTPGRL D +R + ++ S+LK +++DEADEML++GF +DI+ I++ +P R+ LM Sbjct: 121 PQVIVGTPGRLLDLMRRQIIDTSYLKTLIMDEADEMLNMGFIEDIKAIVEQTPSSRQTLM 180 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ ++ LA+ + V I +++ ID V S++ + + +L Sbjct: 181 FSATMPKSVQNLAQQFLTQPAEVKIEAKHLTADLIDQYFVKCRDSEKFDILTRMLDIESP 240 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F T+ V + L+ + + G+++QQ+R+ + + GR + +ATDVA Sbjct: 241 DKAIIFARTKKRVDEIGRGLSLRGYDAELIHGDVTQQKRTQVMNEFKQGRLELLVATDVA 300 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348 ARGID+ + V + ++ +PE+ +HR GRTGRAG +G SV FV+ Sbjct: 301 ARGIDVSGVTHVYNYDIPQDPESYVHRIGRTGRAGNEGQSVTFVM 345 >gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus C160] gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp. aureus C427] gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus A017934/97] gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp. aureus EMRSA16] gi|81650664|sp|Q6GEZ3|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168 gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp. aureus C427] gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus C160] gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus A017934/97] gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp. aureus EMRSA16] gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00] Length = 506 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 69 -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|305667396|ref|YP_003863683.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170] gi|88709444|gb|EAR01677.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170] Length = 432 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 11/367 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F+N I + I +AL + GY + T +QE + L+ KD+L AQTG+GKT AF + + Sbjct: 3 FKNLGIIEPILKALGQEGYSSPTPIQEQAVPILLKGKDLLGCAQTGTGKTAAFAIPILQQ 62 Query: 62 LLAE---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + + NDR A L + PTRELA+Q+G TG+ V GGV ++ Sbjct: 63 IHNDRQSNDRHRKIKA---LVVTPTRELAIQIGESFTAYGKFTGIRNTVIFGGVKQGKQT 119 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+NG I++ TPGRL D + +++ ++ VLDEAD+MLD+GF DI I+ P Sbjct: 120 QALKNGVDILIATPGRLLDLMNQGFISLRDIEYAVLDEADQMLDMGFIHDIRKIIAKLPP 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 KR+ L FSAT+ I L++ D RV I E ++ V S++ +V++ Sbjct: 180 KRQSLFFSATMPKDIVALSRTILGDFERVTIKPEQATAEKVEQLVYFVNKSNKVKLLVHL 239 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + +VF T+ ++ K L + A+ G SQ R AL + G +V Sbjct: 240 LENRPNSSVLVFSRTKHGANKIVKKLGQADIASAAIHGNKSQTARQKALGDFKAGELKVL 299 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RR 355 IATD+AARGID+ DL LV++ +L + PE +HR GRTGRA G+++ ++ Q R Sbjct: 300 IATDIAARGIDVDDLALVVNFDLPNVPETYVHRIGRTGRASASGIAISFCDRDEQPYLRD 359 Query: 356 AERLFRE 362 E+L ++ Sbjct: 360 IEKLIKQ 366 >gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5] gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5] Length = 538 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 194/336 (57%), Gaps = 13/336 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E+G T VQ+ + L+ KDV+ A+TG+GKT+AF L + + P A Sbjct: 27 LKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQHI-------DPKRA 79 Query: 75 -PLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL IAPTRELA+Q+ E + L A G+ + GG V ++ R L+ G +++GT Sbjct: 80 YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKLEGGRQLIIGT 139 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R L + +K +VLDEAD+ML +GF D++E ++ + P +R+ ++FSAT+ Sbjct: 140 PGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQTMLFSATMPA 199 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249 + LA NY V + I + + + V+V +DR +A+ ++ H AI+ Sbjct: 200 GVKQLAGNYMNQPVDIVIKGASPIPLE-QIQQVVVECTDRSKQDALRAMIEEHNPFLAII 258 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ + + L H +Q L G+LSQ +R ++ R+ + ++ +ATDVAARG+D Sbjct: 259 FCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQLLVATDVAARGLD 318 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + + V + ++ + E+ +HR GRTGRAG GM++ Sbjct: 319 VEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAI 354 >gi|221123566|ref|XP_002167654.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Hydra magnipapillata] Length = 685 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 198/339 (58%), Gaps = 12/339 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ G VQ N DV+V A+TG+GKT+AF L + L +EN Sbjct: 71 LNANGIKAFFPVQSTTYNAIFEGSDVIVQARTGTGKTLAFTLPVIERLNSEN-LTERGRV 129 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 PL LA+APTRELA+Q+ +E+E + V V+ GG S ++ +L+ G +VGTPGR Sbjct: 130 PLVLALAPTRELAMQIYQEVE-KFKPNNVQVSCFYGGSSYEKQEGELRRGVDFLVGTPGR 188 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRMLMFSATISP 191 + D I+ L+++ LK V+LDEAD M+D+GF+DD+E IL +S +K + L+FSAT+ P Sbjct: 189 IADLIQRGVLDLTKLKHVILDEADRMMDMGFQDDVEKILKHSYTSARKPQTLLFSATVPP 248 Query: 192 AITTLAKNYQKDAVRV-NIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--N 246 + +K Y ++V ++ E N+ + + ++ + + +R I +I++ + K Sbjct: 249 WLQQNSKKYLSSNLKVFDLIGEDKNKGATTVQHKVIKCSYWERPLLIKDIMQLYSGKFGK 308 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F +T+ + + + + L G++SQ +R LQ R+G+ IATDVAAR Sbjct: 309 TIIFTTTKQEANELS--VESSIPDSQVLHGDISQSQREITLQGFRNGKFNCLIATDVAAR 366 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+D+P+++LVI E ++ + +HR+GRTGRAGR G+ V Sbjct: 367 GLDIPEVDLVIQTEPPNDIDFYIHRAGRTGRAGRSGVCV 405 >gi|167625028|ref|YP_001675322.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167355050|gb|ABZ77663.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 437 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 185/339 (54%), Gaps = 2/339 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSPA 72 ++++GY T++Q + L +D++ SAQTG+GKT AF L L L+ + +D S A Sbjct: 40 VAQKGYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKA 99 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELAVQV + T V V GGVS+ + L G ++V TP Sbjct: 100 KRASVLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATP 159 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R LN+S ++ +V DEAD MLD+GF D+I IL P KR+ L+FSAT S A Sbjct: 160 GRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSSA 219 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L+K + +R+ + N + I+ V + + +++ + +VF Sbjct: 220 IFELSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSERKTELLCHLINKSAWQQVLVFSR 279 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + + + + + A G+L Q R L + G+ + +ATDVAARG+D+ + Sbjct: 280 KKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDIVE 339 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 L++V++ E+ E+ +HR GRTGRAG G ++ + ++ Sbjct: 340 LKVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSED 378 >gi|307610952|emb|CBX00571.1| hypothetical protein LPW_22891 [Legionella pneumophila 130b] Length = 468 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/356 (36%), Positives = 205/356 (57%), Gaps = 12/356 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F P Q + ++L+ Y N+T +Q L LR +D++ A+TGSGKT AF L+L + Sbjct: 13 FSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLLNN 72 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120 L + S A AL + PTRELA QV + + L V + + GG+ + + Sbjct: 73 L-----KIS-FFAVQALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDS 126 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++GAHI+VGTPGR+ H++ L++S +KA+VLDEAD MLD+GF DDI+ I+ PK+R Sbjct: 127 LRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQR 186 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239 + L+FSAT I L+K + K+ V + + DI+ V + ++ ++L Sbjct: 187 QTLLFSATYPEEIKQLSKQFMKNPKEVYVETP-LDEIDIEQHFYEVTKQTQKFPLLKSLL 245 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 ++ + ++FC+T+ T L F +AL+G++ Q ER A+ + + + Sbjct: 246 LHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILV 305 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ATDVAARG+D+ +L VI+ +L+ + + +HR GRTGRAG KG+++ V P + QR Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQR 361 >gi|293602831|ref|ZP_06685270.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC 43553] gi|292818625|gb|EFF77667.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC 43553] Length = 414 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/374 (34%), Positives = 196/374 (52%), Gaps = 6/374 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L+ D+L +AQTG+GKT F L + L+ + Sbjct: 19 AIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHLLMQQKPEARKPG 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTREL QV ++ T + V GGV+++ + L+ I+V TPG Sbjct: 79 RPRCLILTPTRELTAQVAESVQTYGKYTSLTSMVMFGGVNINPQISALRKPLDILVATPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT S I Sbjct: 139 RLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATFSDEI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLA+ + V++ N + +V + + I +I+R G +VF T Sbjct: 199 RTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLISHIIRESGWHQVLVFTRT 258 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + A+ G SQ R+ AL +D V +ATD+AARG+D+ L Sbjct: 259 KHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVLVATDIAARGLDIDQL 318 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR---EANVSV 367 V++ EL + PE+ +HR GRTGRAG G +V ++ + + + ERL + E Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKDIERLIKKTIERKPVE 378 Query: 368 VWEPAPSVEAIRER 381 W P+P+ A ER Sbjct: 379 GWTPSPTSAAAFER 392 >gi|242310089|ref|ZP_04809244.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489] gi|239523386|gb|EEQ63252.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489] Length = 504 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 7/333 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + + E G+ + +Q+ ++ L DV+ AQTG+GKT AF L L + L N Sbjct: 25 DGIREVGFREPSPIQKEVIPIILDGLDVIAQAQTGTGKTAAFALPLVNGL-KHNGSIE-- 81 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL IAPTREL +Q+G E+ L V GG + R+ L IV+ TP Sbjct: 82 ----ALVIAPTRELVMQIGDEIFKLGKYNKVRTVSLFGGQPIQRQVELLAKKPQIVIATP 137 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R L + VVLDE+DEMLD+GF DDIE I P +R+ L+FSAT+ Sbjct: 138 GRLLDHLRNGRLKKFAPQIVVLDESDEMLDMGFLDDIEEIFSYLPSERQTLLFSATMPTP 197 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ + V I + + DI R ++ +R++AIV ++ AI+F Sbjct: 198 IKHLAQKILHNPKLVKITPSDTTNQDISQRYYIINEQEREDAIVRLIDSEMPTKAIIFTR 257 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + + L + ++ AL G++ Q+ER +++ +D + +ATD+AARG+D+ Sbjct: 258 MKKEADLLCERLVDRGYKAGALHGDMEQRERQKSIKAFKDSSVNILVATDIAARGLDISG 317 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + V + + NPE+ +HR GRTGRAG+KG+++ Sbjct: 318 VSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAI 350 >gi|255319460|ref|ZP_05360674.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82] gi|262378516|ref|ZP_06071673.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens SH164] gi|255303400|gb|EET82603.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82] gi|262299801|gb|EEY87713.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens SH164] Length = 383 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 121/346 (34%), Positives = 202/346 (58%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +LN L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPKLKKAIDALGFKEMTPIQQKVLNYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121 + R+ + AL +APTRELA+Q+ + + L T + + +GGV ++++ L Sbjct: 69 PIKEQRYRGEAR--ALILAPTRELALQIESDAKELTKFTDLHLVTLLGGVDFDKQKKQLD 126 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 QN I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 QNFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +VA D+ + IL Sbjct: 187 RQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVANRDKYKLLQEIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R + ++F + R V R L + ++VV LSGE++Q +R L ++G+ + I Sbjct: 247 RDEPIEKVMIFANRRDQVRRLYDHLKKDGYKVVMLSGEIAQDKRLKMLDQFKNGKHNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + ++ VI+ L ++ +HR GRTGRAG +G+S+ Sbjct: 307 ATDVAGRGIHVDNVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSI 352 >gi|313619263|gb|EFR91012.1| ATP-dependent RNA helicase DbpA [Listeria innocua FSL S4-378] Length = 435 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 196/355 (55%), Gaps = 20/355 (5%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 +D++ +QTGSGKT AF + +A ++ E ++ P AL I PTRELA+QV E + Sbjct: 2 EDIVAKSQTGSGKTAAFAIPIAEQVVWEENK------PQALIIVPTRELAMQVKTECTNI 55 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + A G +++ +L HIVVGTPGRL DHI LN+ + +VLDE Sbjct: 56 GRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEV 115 Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217 DEML +GF D +E IL PK+R+ L FSAT+ + L K YQ + + + +ASE + + Sbjct: 116 DEMLSMGFIDQVEDILSRLPKQRQNLFFSATLPEEMQDLIKRYQDNPMVIEMASE--KTN 173 Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 I + V + +++ + ++L +AI+FC+T+ V T +L + + G Sbjct: 174 PIFH--VEMQTDNKEKTLKDVLITENPDSAIIFCNTKNQVDELTDLLD---VKASKIHGG 228 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q++R A+ + G++R IATDVA RGID+ ++ LVI+ +L EN +HR GRTGR Sbjct: 229 LRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGR 288 Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV-------EAIRERDAQR 385 AG+ G ++ + N + N+++ + P++ EA R++ +R Sbjct: 289 AGKSGKAISFVKTNENPLLRDIEEMLNITIEKKRKPTIIEVKANEEAFRKKQQKR 343 >gi|229161413|ref|ZP_04289395.1| ATP-dependent RNA helicase [Bacillus cereus R309803] gi|228622053|gb|EEK78897.1| ATP-dependent RNA helicase [Bacillus cereus R309803] Length = 454 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + V + SE + I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC 23970] gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC 23970] Length = 462 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 123/342 (35%), Positives = 186/342 (54%), Gaps = 5/342 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ + L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAD 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347 >gi|113969089|ref|YP_732882.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-4] gi|113883773|gb|ABI37825.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 458 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/336 (37%), Positives = 193/336 (57%), Gaps = 8/336 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E L+ GY +T +Q L L +DV+ +TGSGKT AFGL L + L + Sbjct: 10 PELL-ENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R L + PTRELA QV +E+ L V V GGV + + L++GAH Sbjct: 69 RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAH 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I++ SP++R+ L+FS Sbjct: 123 IIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I ++AK D V V +A + + + + L R A+ +L ++ Sbjct: 183 ATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPES 242 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VFC+T+ + L++ F V+AL G+L Q++R L + A V +ATDVAAR Sbjct: 243 AVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAAR 302 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 G+D+ L+ V + ++ + E +HR GRTGRAG KG Sbjct: 303 GLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338 >gi|326405112|ref|YP_004285194.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301] gi|325051974|dbj|BAJ82312.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301] Length = 470 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 191/335 (57%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+SE+ Y T +Q + L D++ AQTG+GKT AF L + + A R +P Sbjct: 16 AISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILHRIAANRARPAP-R 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL +APTRELA Q+ T VAV IGG + R +++G ++V TPG Sbjct: 75 ACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRMESGVDLLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + + ++ VVLDEAD+MLDLGF I I+ P++R+ +MFSAT+ I Sbjct: 135 RLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQAVMFSATMPKPI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + +D V ++ E++ ID + +L+A ++ + + +L + AIVF T Sbjct: 195 RALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLLADVAVERAIVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + T+ L + A+ G SQ +R AL R GR RV +ATD+AARGID+ ++ Sbjct: 255 KHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVLVATDIAARGIDVDNV 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRT RAG +G+++ ++ Sbjct: 315 SHVVNFELPNVPESYVHRIGRTARAGAEGVAISLV 349 >gi|319951635|ref|YP_004162902.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM 14237] gi|319420295|gb|ADV47404.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM 14237] Length = 633 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 120/349 (34%), Positives = 201/349 (57%), Gaps = 12/349 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 I +A+++ G+ + VQE + P L + D++ AQTG+GKT AFG L + A+ Sbjct: 13 ILDAITDMGFETPSDVQEKAI-PILLGDDTDLVALAQTGTGKTAAFGFPLIQKIDAD--- 68 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + L ++PTREL +Q+ E++ Y K VVA+ GG S+ + R ++ GA Sbjct: 69 ---SRTTQGLILSPTRELCLQITNEMQSYSKYEKNINVVAIY-GGASITDQARQIKRGAQ 124 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGR+ D + ++IS + +LDEADEML++GF +DI+ IL +PK++ +FS Sbjct: 125 IIVATPGRMKDMMSRGLVDISKIDYCILDEADEMLNMGFFEDIKEILSDTPKEKSTWLFS 184 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + T+AK + + + + ++N S + + +V+ DR A+ + + Sbjct: 185 ATMPREVATIAKKFMRSPQEITVGAKNSGASTVQHEYYVVSGRDRYPALKRLADTNPDIF 244 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +++FC T+ + + L E + AL G+LSQ +R + R + ++ +ATDVAAR Sbjct: 245 SVIFCRTKRDTQKVAESLIEDGYNAGALHGDLSQNQRDLVMSSFRKKQIQILVATDVAAR 304 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 GID+ D+ VI+ +L E HRSGRTGRAG+ G+S+ +I ++ R+ Sbjct: 305 GIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRK 353 >gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava NJ9703] gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava NJ9703] Length = 469 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 123/342 (35%), Positives = 185/342 (54%), Gaps = 5/342 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347 >gi|256789946|ref|ZP_05528377.1| DEAD-box RNA-helicase [Streptomyces lividans TK24] gi|289773828|ref|ZP_06533206.1| DEAD-box RNA-helicase [Streptomyces lividans TK24] gi|289704027|gb|EFD71456.1| DEAD-box RNA-helicase [Streptomyces lividans TK24] Length = 439 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 200/371 (53%), Gaps = 5/371 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P V+ E ++ G +Q A L L +DVL A+TGSGKT+AFGLAL L Sbjct: 13 GLPPVLVETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLAL---LAGT 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R + PLAL + TRELA QV L GV + +GG+S++R+ + L++GA Sbjct: 70 AGRRAEPKRPLALVLVSTRELAQQVSDALAPYARALGVRLTTVVGGLSINRQTQALRDGA 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VV TPGRL D + + +++ ++ VLDEAD+M DLGF + ILD P + L+F Sbjct: 130 EVVVATPGRLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRLLF 189 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L +++ V V++ + S +++ + V +D+ I G Sbjct: 190 SATLDGDVDQLVRDHLHAPVPVSVDPASASVSTMEHHVLTVHPADKYATATEIAARDG-- 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+A V RFT+ L AL SQ +R++ L +G V +AT+VAA Sbjct: 248 RVLMFLDTKAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVATNVAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + DL+LV++ + ++ ++ LHR GRT RAGR G V ++ + +R R+ EA + Sbjct: 308 RGIHVDDLDLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVNRMMSEAGI 367 Query: 366 SVVWEPAPSVE 376 P S E Sbjct: 368 RPTVTPVRSGE 378 >gi|116327340|ref|YP_797060.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332045|ref|YP_801763.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120084|gb|ABJ78127.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125734|gb|ABJ77005.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 549 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 117/334 (35%), Positives = 190/334 (56%), Gaps = 7/334 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E GY LT +QE + L KD++ AQTG+GKTVAF + + T+L +N Sbjct: 15 AIQEIGYTELTPIQEKSIPHGLEGKDIIGLAQTGTGKTVAFLIPVVHTILTKN-----IQ 69 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTREL +Q+ E + L + + AV IGG + +DL+ I+V TP Sbjct: 70 KVSALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQNKDLEGLNGIIVATP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D ++ ++IS+++ VLDEAD MLD+GF DI ++L +++ L+FSAT+S Sbjct: 130 GRLIDMVKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRKQTLLFSATLSVE 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251 + LA + + V + I E ID + V + ++ + N I+ I+F Sbjct: 190 VMRLAYRFLNEPVEIQINPEKIITERIDQKIVHLGREEKIPYMTNLIVNSKDEGQGIIFT 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + +A++ + L ++ + +S EL Q++R L+ + G+ R +ATDVA+RGID+ Sbjct: 250 NYKANIPKIVYTLRKYGIPITGISSELDQKKRLRLLRDFKSGKYRYMVATDVASRGIDVE 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++++V + +L + EN +HR GRT RAGR G ++ Sbjct: 310 NIDIVYNYDLPQDTENYVHRIGRTARAGRMGKAI 343 >gi|240080542|ref|ZP_04725085.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19] gi|240118143|ref|ZP_04732205.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1] gi|240123692|ref|ZP_04736648.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332] gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] Length = 462 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL +APTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD+ + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1] gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1] Length = 519 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 187/347 (53%), Gaps = 10/347 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY T +Q + L +DVL AQTG+GKT AF L + + L R A Sbjct: 14 QAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGRAR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV E + VA+ IGGVS + L G +++ TP Sbjct: 71 RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT+ P Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNA 247 I LA + + RV +A + I+ R LVA + +LR+ +N Sbjct: 191 IERLADMFLHNPQRVEVARPASTATTIEQR--LVATGAEGHEKRKVLRHLIRSASELQNG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+ + V++ + L H F AL G++ Q+ R AL R G + +A+DVAARG Sbjct: 249 IIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 +D+P + V + ++ +PE+ +HR GRTGRAGR G + + ++ +R Sbjct: 309 LDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDER 355 >gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium extorquens PA1] gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens PA1] Length = 519 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 187/347 (53%), Gaps = 10/347 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY T +Q + L +DVL AQTG+GKT AF L + + L R A Sbjct: 14 QAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGRAR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV E + VA+ IGGVS + L G +++ TP Sbjct: 71 RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT+ P Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNA 247 I LA + + RV +A + I+ R LVA + +LR+ +N Sbjct: 191 IERLADMFLHNPQRVEVARPASTATTIEQR--LVATGAEGHEKRKVLRHLIRSASELQNG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+ + V++ + L H F AL G++ Q+ R AL R G + +A+DVAARG Sbjct: 249 IIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 +D+P + V + ++ +PE+ +HR GRTGRAGR G + + ++ +R Sbjct: 309 LDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDER 355 >gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus N315] gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus MW2] gi|49486874|ref|YP_044095.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650754|ref|YP_186888.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus COL] gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus JH1] gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus Mu3] gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781] gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763] gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719] gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299] gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300] gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224] gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus A5948] gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937] gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30] gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3] gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus ED98] gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117] gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765] gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102] gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132] gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754] gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819] gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1] gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796] gi|81648913|sp|Q6G7M9|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985 gi|81694077|sp|Q5HEB9|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SACOL2072 gi|81704263|sp|Q7A0D2|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004 gi|81705333|sp|Q7A4G0|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885 gi|81781186|sp|Q99SH6|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081 gi|122538977|sp|Q2FWH5|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 gi|123484971|sp|Q2FF45|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037 gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315] gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2] gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus aureus subsp. aureus COL] gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp. aureus JH9] gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722532|dbj|BAF78949.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781] gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763] gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719] gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299] gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300] gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224] gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus A5948] gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937] gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3] gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30] gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp. aureus ED98] gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20] gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102] gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765] gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117] gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981] gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754] gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819] gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796] gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03] gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01] gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11] gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46] gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus T0131] gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus subsp. aureus 21189] gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus subsp. aureus 21172] gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus subsp. aureus 21193] Length = 506 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 69 -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Staphylococcus aureus subsp. aureus ST398] Length = 506 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 69 -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha275] Length = 462 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301] gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301] Length = 510 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 185/337 (54%), Gaps = 3/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I +AL E+GY+N T +QE + L +DVL AQTG+GKT +F L + L R Sbjct: 35 EPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDILSGSRAR 94 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P +L + PTRELA+QV + A+ IGG S+ +R L G ++ Sbjct: 95 ---ARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVDVL 151 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D GL +S ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT Sbjct: 152 IATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLFFSAT 211 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++P I LA + + ++ ++ + I LVA D+ A+ ++R +NA+ Sbjct: 212 MAPEIRRLADAFLSNPKQITVSRPATVATTITEGLSLVATHDKREALRRLIRTEDVQNAL 271 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+ + V K L H F L G++ Q R L+ + G R+ + +DVAARGI Sbjct: 272 VFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCSDVAARGI 331 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ L V + ++ + E+ +HR GRTGRAG +G ++ Sbjct: 332 DIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRAL 368 >gi|218678587|ref|ZP_03526484.1| DEAD/DEAH box helicase domain protein [Rhizobium etli CIAT 894] Length = 158 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 102/158 (64%), Positives = 119/158 (75%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M F + I +AL +RGY LT VQ+++L+P L D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPALAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +RF A APLAL IAPTRELA+QV RELEWLY TG V+A C+GG+ + ERR Sbjct: 61 TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRS 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEAD Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEAD 158 >gi|117621455|ref|YP_855288.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562862|gb|ABK39810.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 416 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/338 (37%), Positives = 184/338 (54%), Gaps = 7/338 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDR 68 + + L+E GY T VQ + + L +D++ AQTG+GKT AF L L LL ND Sbjct: 15 LQQTLTELGYAAPTPVQASAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQLLQNPTNDA 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P A L + PTRELA+QV + T + + GGVS+ + L+ G I+ Sbjct: 75 PRPIRA---LVLVPTRELAIQVHESVTRYAKGTDLTSTLVYGGVSIAAQVEALKAGVDIL 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH+R L+++ L +V DEAD MLD+GF D+I+ +L P R+ L+FSAT Sbjct: 132 IATPGRLLDHLRQGALSLAALHHLVFDEADRMLDMGFMDEIKELLKQIPADRQTLLFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247 + L+K D + +A N ++++ R V DR A+V ++L G A Sbjct: 192 CDDNLFALSKVLLHDPELIEVAPRNTTAAEVEQRVYTVD-GDRKLALVEHMLNVKGWAPA 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++F TR + + L + +A G+LSQ R L R G + +ATDVAARG Sbjct: 251 LIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLEFRAGTLQALVATDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +D+ DL VI+ E E+ +HR GRTGRAG KG+++ Sbjct: 311 LDISDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAI 348 >gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824] gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium acetobutylicum EA 2018] Length = 528 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 150/520 (28%), Positives = 251/520 (48%), Gaps = 39/520 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ + +Q + + D++ AQTG+GKTVAFG + S + +++ Sbjct: 17 KAIDDMGFEEPSKIQAEAIPVVIDGYDMIGQAQTGTGKTVAFGAPIISKIKDIDEK---- 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ + PTRELA+Q+ EL L V V GG S+ R+ R ++ G ++V TP Sbjct: 73 EGVQAIILTPTRELAIQITDELTRLSKYARVRVLPIYGGQSIERQMRAIKRGVDVIVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI+ K + + +K +VLDEADEMLD+GF DDIE I+ + R+ ++FSAT+ Sbjct: 133 GRIMDHIKRKTVKLDKVKFLVLDEADEMLDMGFIDDIEGIIKNISGDRQTMLFSATMPAP 192 Query: 193 ITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA NY K V+ + I + I V D+ A+ I+ + I+FC Sbjct: 193 IKKLASNYMKKEVKHIAIIKNSLTVERIQQFYFEVKNKDKFEALCRIIDVEEPETTIIFC 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + + + V + G++SQ +R N L+ ++ +ATDVAARGID+ Sbjct: 253 RTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDFLVATDVAARGIDVH 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368 ++ VI+ ++ + E+ +HR GRTGRA +G++ V P+ M ++ E+ + + Sbjct: 313 NVSHVINYDIPQDMESYVHRIGRTGRANAEGIAYSLVTPREYVMIKQIEKFTKS---KIR 369 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGFLRIH 424 + P+++ I E L D + +I+ D+ K + K D E ++A +++ Sbjct: 370 RKEIPTIDDIFET-KYNTLTDKI-TKNIEKDDFKKYIPFVQKLDDEFNLVDVSAALVKM- 426 Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484 D F + S S G K K + L Sbjct: 427 ---------------------IFDKEMGFDYSDDDKLKSDESVRLFFSAGRKDKLTVKKL 465 Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524 + + +SG+ IG I + TFV+V D++ RT Sbjct: 466 LEFIDNASGVEGNEIGDIDILDKFTFVDVPERLRDVIIRT 505 >gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013] gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240355] Length = 462 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|121727419|ref|ZP_01680547.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52] gi|147673597|ref|YP_001218057.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395] gi|262167586|ref|ZP_06035291.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27] gi|262190509|ref|ZP_06048754.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93] gi|121630191|gb|EAX62591.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52] gi|146315480|gb|ABQ20019.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395] gi|227014452|gb|ACP10662.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395] gi|262024039|gb|EEY42735.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27] gi|262033605|gb|EEY52098.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93] Length = 460 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 211/366 (57%), Gaps = 10/366 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ +T +Q L L+ +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA QV ++ L A + V GG+ + + L++GAH Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT +I +A++ ++A+ + + + + S Y + + RD A+ +L +H + Sbjct: 186 ATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAAR Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ +++ Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365 Query: 367 VVWEPA 372 + EP+ Sbjct: 366 I--EPS 369 >gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase domain-containing protein [Isosphaera pallida ATCC 43644] gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC 43644] Length = 422 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 187/337 (55%), Gaps = 7/337 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL Y + +Q A + P L +DV+ A+TG+GKT AF L L + ++ P Sbjct: 27 ALKTVNYRVPSPIQAAFIPPALEGRDVIGQAKTGTGKTAAFSLPL----IEMHEPGQPG- 81 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P A+ +APTREL Q+ E E L +VV GG + R+ R L G +VVGTPG Sbjct: 82 -PQAIILAPTRELVQQICGEFERLARGRDLVVRGIYGGEPIERQLRSLAKGVDVVVGTPG 140 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH++ +++ + VVLDEAD MLD+GFR DIE IL P+ + L+ SAT+SP + Sbjct: 141 RVIDHLQRGTMSLEGVYHVVLDEADRMLDIGFRPDIERILRKVPQPHQTLLLSATLSPEV 200 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA Y + V +N++ + I + + V + + ++++L + IVFC T Sbjct: 201 RRLAARYMHEPVELNLSRDEPSVEKIVQKYIPVDHNRKMELLLHLLELEKPRQCIVFCRT 260 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + LA V + G+L Q R+ ++ RDG + +ATDV RGID+ ++ Sbjct: 261 KRGADKLAQRLARRYPGVATIHGDLPQTARNRVMRGFRDGSIPILVATDVVGRGIDVEEI 320 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349 V++ ++ +PEN LHR GRTGR G+ G++ FV P Sbjct: 321 SHVVNYDIPDDPENYLHRIGRTGRMGKDGVAYTFVGP 357 >gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f. nagariensis] gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f. nagariensis] Length = 574 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 190/362 (52%), Gaps = 27/362 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63 +P ++ +A+ GY + +Q A + L+++DV+ A+TGSGKT AF L + S ++ Sbjct: 162 LPSLLIKAIDRVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYIMRQP 221 Query: 64 ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 EN+ A P A+ +APTRELA Q+ E L T +A +GG S+ + Sbjct: 222 PMTEENE----ADGPYAVVLAPTRELAQQIEEETHKLAYYTNYRIASVVGGQSIEEQGAK 277 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179 L+ G IV+ TPGRL D I ++ VVLDEAD M+DLGF + +LD+ P Sbjct: 278 LRKGCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPSSF 337 Query: 180 ----------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223 R MFSAT+ PA+ LAK Y + V V I S + ++ R Sbjct: 338 LKPDEDGAVLEANRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGKVTDNVTQRV 397 Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283 +V +++ + + K IVF +T+ + L E ++ L G +Q +R Sbjct: 398 FVVKENEKPRVLEQEMESVDEKRVIVFVNTQRQCDNVHRHLEELGYRCTILHGGKTQDQR 457 Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343 ++ RDG IATDVA RGID+PD+ LVI+ ++ +N EN HR GRTGRAG+KG+ Sbjct: 458 EAGIKGFRDGTYNCLIATDVAGRGIDVPDVALVINYDMPNNIENYTHRIGRTGRAGKKGV 517 Query: 344 SV 345 +V Sbjct: 518 AV 519 >gi|119468751|ref|ZP_01611803.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein family [Alteromonadales bacterium TW-7] gi|119447807|gb|EAW29073.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein family [Alteromonadales bacterium TW-7] Length = 433 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 187/345 (54%), Gaps = 3/345 (0%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K F P++I +AL E Y LT +Q A + + KDVL SAQTG+GKT AF L + Sbjct: 3 FKSFSFAPEII-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVIQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L+ E+D S +AP AL +APTRELA Q+ + T + V GGV+ + Sbjct: 62 KLI-ESD-LSTTNAPTALVLAPTRELAEQIANNCKEYAKHTSLKVVSLFGGVNTAGQENA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G IVV TPGRL DHIR L+++++K +VLDEAD MLD+GF D++ ++ S R Sbjct: 120 LKAGVDIVVATPGRLLDHIRLGNLSLANVKHLVLDEADRMLDMGFITDMQTVIKSCADDR 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++L+FSAT AI A K V + N S + + V + + ++ Sbjct: 180 QILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRKQELLSELIG 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + +VF + + + K L G+ SQ R AL+ ++G+ RV +A Sbjct: 240 KKNWQQVLVFVNMKDTADELVKELNLDGIPATVCHGDKSQGNRRRALREFKEGKVRVLVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 T+VAARGID+ L VI+ +L E+ +HR GRTGRAG +G ++ Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAI 344 >gi|254495452|ref|ZP_05108376.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] gi|85819807|gb|EAQ40964.1| DEAD/DEAH box helicase [Polaribacter sp. MED152] Length = 411 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 199/343 (58%), Gaps = 2/343 (0%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F +IP + I +A++E + T VQE + L +K+V+V+AQTG+GKT AF L + + Sbjct: 3 FSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVLDKKNVIVAAQTGTGKTAAFALPIINL 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + D AL I PTRELA+Q+ + + + GGVS+ ++ L Sbjct: 63 LFDKQDAEKGEKKIKALVITPTRELAIQILENFKSYSKYSNLRSTAVFGGVSLEPQKEIL 122 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G I+V TPGRL D +++S L+ VLDEAD MLD+GF +DI+ I P+K++ Sbjct: 123 AKGVDILVATPGRLIDLQMQGNIDLSQLEIFVLDEADLMLDMGFINDIKKIEKLCPRKKQ 182 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSATI I L+K+ K+A +V+I E +I + ++ + +++LR Sbjct: 183 TLLFSATIPEKIDELSKSIVKNATKVDINPEETTAKNIGQLLYYLPKKNKTDLCLHLLRN 242 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 I+F T+ +V + + L ++ + V ++ G+ +Q R+ A++ + +A + IAT Sbjct: 243 TINGKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFKSKKASILIAT 302 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 DVAARGID+ +++ +I+ ++ + PE +HR GRTGRAG+ G++ Sbjct: 303 DVAARGIDITNVDAIINFDIPNVPEIYVHRIGRTGRAGKSGIA 345 >gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus H19] gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus H19] Length = 506 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 69 -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AI+F Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIIFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114] gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114] Length = 464 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 123/342 (35%), Positives = 185/342 (54%), Gaps = 5/342 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347 >gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis FRI909] Length = 509 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 68 QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI L + + K A ++ I + N + SD ID +V ++ + N L H + AIV Sbjct: 188 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|225873935|ref|YP_002755394.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196] gi|225793658|gb|ACO33748.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196] Length = 430 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/351 (36%), Positives = 197/351 (56%), Gaps = 9/351 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + L+ +V T VQEA + P + KDVL +AQTG+GKT+ F L LLA Sbjct: 7 NLSSHLKNQLAVNQFVTPTPVQEAAIPPAMEGKDVLATAQTGTGKTLGFLLPAMERLLAT 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P L + PTRELA+QV ++ L K+ A IGG S + + RDL+ GA Sbjct: 67 KGKH-----PAVLILTPTRELALQVEKQYAQLAGKSLPQAATLIGGASENNQIRDLKAGA 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL D + + +++ ++ +VLDEAD MLD+GF I I+ P++R+ + F Sbjct: 122 RLIVATPGRLEDFLERRLIDLKRIEVLVLDEADRMLDMGFIPAIRRIVAKLPRQRQTMCF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SATI PA+ L + VR++ S + S + A V +D+ A+V+ + Sbjct: 182 SATIDPAVAHLLDEILTNPVRLSFGSTQQTSSSVRLIAYEVD-ADQKAALVHRVVTAEEG 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++VF T+ K L V L G+ SQ +R+ AL+ + GRARV +ATDVA+ Sbjct: 241 QSLVFVGTKRRTEHVAKRLDRAGISVAVLHGDRSQSQRNRALEDFQRGRARVLVATDVAS 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRR 355 RGI + ++ VI+ ++ E+ +HR+GRTGRAG G+ + F P ++RR Sbjct: 301 RGIHVDNIAQVINYDMPKMTEDFIHRAGRTGRAGATGVAATFYTP--LERR 349 >gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 453 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY N T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYENPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ K+ V + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-------FVIPQNMQRRA 356 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ +V +++ Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 357 ERLFREANV 365 +R E V Sbjct: 366 DRKLNEVTV 374 >gi|238750131|ref|ZP_04611634.1| DEAD/DEAH box helicase domain protein [Yersinia rohdei ATCC 43380] gi|238711675|gb|EEQ03890.1| DEAD/DEAH box helicase domain protein [Yersinia rohdei ATCC 43380] Length = 619 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 185/341 (54%), Gaps = 10/341 (2%) Query: 44 AQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKT- 101 AQTGSGKT AFGL L + PA AP L +APTRELA+QV L Sbjct: 2 AQTGSGKTAAFGLPLLHNI-------DPALKAPQVLVLAPTRELAIQVAEALTSFSKDIK 54 Query: 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161 GV V GG + R L+ G +VVGTPGRL DH++ L +S+LK +VLDEADEML Sbjct: 55 GVNVVALYGGQRYDVQLRALREGPQVVVGTPGRLLDHLKRGTLKLSNLKGLVLDEADEML 114 Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221 +GF +D+E IL P + + +FSAT+ AI + + + K+ V I S DI Sbjct: 115 RMGFIEDVENILAQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ 174 Query: 222 RAVLVALSDRDN-AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280 V R N A+V L AI+F T+ + + L + AL+G+++Q Sbjct: 175 VYWKVGGGYRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQ 234 Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340 R L+ ++DGR + IATDVAARG+D+ + LV++ ++ + E+ +HR GRTGRAGR Sbjct: 235 ALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 294 Query: 341 KGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381 G ++ + +R + + R +++ P+ E + ER Sbjct: 295 AGRALLFVENRERRLLQNIERTMKLTIPEVELPNAELLSER 335 >gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium cryptum JF-5] gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5] Length = 503 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 185/337 (54%), Gaps = 3/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I +AL E+GY+N T +QE + L +DVL AQTG+GKT +F L + L R Sbjct: 28 EPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDILSGSRAR 87 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P +L + PTRELA+QV + A+ IGG S+ +R L G ++ Sbjct: 88 ---ARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVDVL 144 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D GL +S ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT Sbjct: 145 IATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLFFSAT 204 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++P I LA + + ++ ++ + I LVA D+ A+ ++R +NA+ Sbjct: 205 MAPEIRRLADAFLSNPKQITVSRPATVATTITEGLSLVATHDKREALRRLIRTEDVQNAL 264 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+ + V K L H F L G++ Q R L+ + G R+ + +DVAARGI Sbjct: 265 VFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCSDVAARGI 324 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ L V + ++ + E+ +HR GRTGRAG +G ++ Sbjct: 325 DIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRAL 361 >gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis] Length = 518 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 199/369 (53%), Gaps = 17/369 (4%) Query: 5 ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64 E IP+ + + + Y T VQ+ L +D++ AQTGSGKT F + ++L Sbjct: 141 EYIPKSLLDNIIRCDYRRPTPVQKYGLAIGCIGRDLMACAQTGSGKTAGFLFPIIISML- 199 Query: 65 ENDRFSPASAPL-----------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113 R P+ APL L ++PTRELA+Q+ +E + TG+ AV GG Sbjct: 200 ---RNGPSKAPLPDDYGDRYFPTCLILSPTRELALQIYQESQRFCYCTGIASAVVYGGTP 256 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + L++G I+VGTPGR+ D I+ L + + +VLDEAD MLD+GF I I+ Sbjct: 257 MREVLDSLRSGCDILVGTPGRVKDMIQRGILGLEGITHLVLDEADRMLDMGFEPQIRDIV 316 Query: 174 DSS--PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 + S P+ R+ LMFSAT I LA ++ D V + + DI+ R + V +D+ Sbjct: 317 EQSGMPRNRQTLMFSATFPDEIQRLAGDFLIDYVFLAVGRVGGAAQDIEQRVIYVEDADK 376 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 D+ +++ L G ++F T+ + L FQ ++ G+ SQ +R +AL + Sbjct: 377 DSYLLHELENWGNGRILIFVETKRKADILQRYLTTQHFQAASIHGDRSQADREDALSAFK 436 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 R ++ +ATDVAARG+D+PD+ LVI+ + N E+ +HR GRTGRAG G+++ I +N Sbjct: 437 LNRVQILVATDVAARGLDIPDVSLVINYDTPQNIEDYVHRIGRTGRAGNTGVAISFINEN 496 Query: 352 MQRRAERLF 360 + A L+ Sbjct: 497 NRPIARDLY 505 >gi|194017071|ref|ZP_03055683.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061] gi|194010939|gb|EDW20509.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061] Length = 480 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 120/367 (32%), Positives = 195/367 (53%), Gaps = 8/367 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 + +AL + T VQ L+ +D++V +QTGSGKT A+GL + + AEN Sbjct: 15 LKQALKALHFHTPTPVQHETLSVAFSRQDLIVKSQTGSGKTAAYGLPICEMVDWAEN--- 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL + PTRELA+QV ++L L + A G ++ +L HIV Sbjct: 72 ----KPQALILVPTRELAMQVKQDLTSLGRLKRIKAAAIYGKAPFQAQKVELAQKNHIVC 127 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+ L++ +LK VLDEADEML++GF + + I++ P KR ++FSAT+ Sbjct: 128 GTPGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIEQVSSIIEYLPPKRMSMLFSATM 187 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S + L++ + + + IA E I + + + + + + + I+ Sbjct: 188 SDEMKKLSEQFLQSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPDSCII 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V+ T L + + G + Q++R + ++G R IATD+AARGID Sbjct: 248 FCNTQDRVNELTMKLDDWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGID 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + D+ VIH +L E +HR+GRTGRAG+ G ++ + +N + + L +EA + Sbjct: 308 VSDMTHVIHYDLPYEKERYIHRTGRTGRAGKSGKTIAFMTKNAKPLIDELKQEAGIDFKT 367 Query: 370 EPAPSVE 376 +P P+ E Sbjct: 368 QPYPTKE 374 >gi|148358461|ref|YP_001249668.1| DEAD box family transporter ATP-dependent RNA helicase [Legionella pneumophila str. Corby] gi|148280234|gb|ABQ54322.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila str. Corby] Length = 414 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 184/338 (54%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + A+SE GY N TS+Q + L D+L SAQTG+GKT +F L + A + Sbjct: 12 LNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQK--ASQQTQT 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + L + PTRELA+QV + + AV GGV H + + L +G I+V Sbjct: 70 SRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + + +VLDEAD MLD+GF DI+ I+ P KR+ L+FSAT + Sbjct: 130 TPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSATFT 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P + TLA+N AV ++IA N I V + + + ++L + +VF Sbjct: 190 PEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ K LAE VA+ G SQ +R+ AL + G+ + IATD+AARGID+ Sbjct: 250 SRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L PE+ +HR GRTGRAG G++V ++ Sbjct: 310 EKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLV 347 >gi|227894493|ref|ZP_04012298.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis DSM 16047] gi|227863652|gb|EEJ71073.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis DSM 16047] Length = 496 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 190/342 (55%), Gaps = 8/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + T+ + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPILQTIDKKE------ 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131 A A+ I PTRELA+Q EL L V V GG + R+ R L++ I+VGT Sbjct: 68 KAIQAIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ +++ +K VVLDEADEMLD+GF DIE IL + +++ L+FSAT+ Sbjct: 128 PGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRKQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + + V I ++ ID V S++ + + ++ G A+VF Sbjct: 188 PILRIGEKFMNNPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R L+ R+G+ + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMTVLKRFREGKLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349 >gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062] gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062] Length = 483 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 141/367 (38%), Positives = 200/367 (54%), Gaps = 10/367 (2%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57 MK F+ + + I A+ E GY T +Q ++ P ++E +D+L AQTG+GKT AF L Sbjct: 1 MKNFDEAGLAEPILRAVKEEGYEAPTPIQREVI-PLMKEGEDILGIAQTGTGKTAAFVLP 59 Query: 58 LASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 L T LAE DR PA AL +APTRELA Q+ + G VAV GGV Sbjct: 60 LL-TRLAE-DRKKPAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVAVIFGGVKPGP 117 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + R L G IV+ TPGRL DH+ G+ + VVLDEAD+MLDLGF I IL Sbjct: 118 QLRALSKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQMLDLGFAPAIRRILGKL 177 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 PK R+ ++ SAT+ I LAK + + +++A +R ID + S + A++ Sbjct: 178 PKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKIDQSVRFLNSSSKRAALL 237 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +IL + AIVF T+ R + L + A+ G SQ+ R +L ++GR + Sbjct: 238 DILSEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRIK 297 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ--- 353 + +ATD+AARGID+ + V++ EL + PE +HR GRT RAG+ G++V + Q Sbjct: 298 ILVATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYL 357 Query: 354 RRAERLF 360 R ERL Sbjct: 358 RDIERLI 364 >gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088] gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088] Length = 412 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 184/336 (54%), Gaps = 3/336 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+S+ GY T++Q A + P L+ KD++ SAQTG+GKT AF L L TLL + + + Sbjct: 14 QAISDTGYTTPTAIQSAAIGPVLQGKDLMASAQTGTGKTAAFTLPLLETLLRKPNS---S 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +P L I PTRELA Q+ + GGV + + R L+ G +++ TP Sbjct: 71 KSPKFLIITPTRELAAQIEASAQTYSKYISCRTLAVFGGVKIGPQIRQLKQGVDVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++ + +VLDEAD MLD+GF I I P ++ LMFSAT S Sbjct: 131 GRLLDLSEQGEVDLKMIDVLVLDEADRMLDMGFIPAIRRIQKLLPATKQTLMFSATYSDE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I TLA+ Y + V V++ +N +D V + + +L +G +VF Sbjct: 191 IRTLAQTYLRRPVEVSVTPKNAAAHTVDQLIYPVDKKQKSAVLQYLLNNYGWVQVLVFSR 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ ++ + L + + A+ G SQ +R+ AL + G+ V +ATD+A+RGID+ Sbjct: 251 TKHGANKLVRELDKANIRAAAIHGNRSQSQRTKALADFKSGKIAVLVATDIASRGIDIAQ 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L +VI+ +L + PE+ +HR GRTGRAG G ++ ++ Sbjct: 311 LPVVINFDLPNVPEDYVHRIGRTGRAGSNGRAISLV 346 >gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] Length = 458 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 113/341 (33%), Positives = 195/341 (57%), Gaps = 10/341 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q+ + L+ +DV+ A+TGSGKT AF L + LL R+ AL + PT Sbjct: 46 TKIQKEAIPLTLQGRDVIGLAETGSGKTGAFALPILQALLQNPQRY------FALILTPT 99 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142 RELA Q+ + + L +K GV AV +GG+ + + L H+++ TPGRL DH+ K Sbjct: 100 RELAFQISEQFQALGSKIGVKTAVIVGGMDMMSQALLLAKKPHVIIATPGRLVDHLENTK 159 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G N+ LK +V+DEAD +L++ F +++ IL P++RR L+FSAT++ + L + Sbjct: 160 GFNLKALKFLVMDEADRILNMDFEVEVDKILKVIPRERRTLLFSATMTQKVQKLQRASLH 219 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 D V+V ++S+ + + + + + +D +V+I+ ++FC T + R Sbjct: 220 DPVKVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVSIINEMAGNTFMIFCGTCHNTLRTAL 279 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 +L + F + L G++SQ +R AL R + I+TDVA+RG+D+P +++VI+ ++ Sbjct: 280 LLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSILISTDVASRGLDIPHVDVVINFDIP 339 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 ++ ++ +HR GRT RAGR G ++ + Q + +R E+L Sbjct: 340 THSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQLI 380 >gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus anthracis CI] gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 454 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE + I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC 14685] gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC 14685] Length = 473 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 123/342 (35%), Positives = 186/342 (54%), Gaps = 5/342 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ + L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFTRLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347 >gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 506 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 69 -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTILFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 402 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 195/350 (55%), Gaps = 9/350 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ +ALS+ T +Q + L+ KD+L SAQTG+GKT+AF + L + L+ E Sbjct: 3 LPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLMNE- 61 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125 S AL I PTRELA QV E+ L +++ ++ VA+ IGG + R+ LQ Sbjct: 62 -----PSIGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQKKP 116 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++GTPGR+ DHI K L ++ +VLDE D M D+GF IE I+ PK R+ LMF Sbjct: 117 QIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQTLMF 176 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L + Y RV++ + I V + S++ +V L Sbjct: 177 SATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVVYASESEKYGKLVTQLCQRKG- 235 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + I+F T+ + L + + +A+ G+L Q +R + R GR ++ +ATDVA+ Sbjct: 236 SIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVAS 295 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 RG+D+P ++ VI+ ++ + + +HR GRT RAG +G ++ FV PQ+ +R Sbjct: 296 RGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRR 345 >gi|167628080|ref|YP_001678580.1| DEAD/DEAH box helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668618|ref|ZP_04756196.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877152|ref|ZP_05249862.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167598081|gb|ABZ88079.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254843173|gb|EET21587.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 581 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 117/343 (34%), Positives = 193/343 (56%), Gaps = 7/343 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67 Q I + + + GY N T +Q+ + L +DVL AQTG+GKT AF L L + + L D Sbjct: 16 QDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLESRD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R AP L +APTRELA+QV + + + CI GG + R L+ G Sbjct: 76 R-----APQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQGVK 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD+ ++L + + L+FS Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 191 ATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEETDG 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ S L ++V A++G++ Q +R + R ++ V +ATDV AR Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVVAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 GIDL + VI+ ++ ++ + +HR GRTGRAGR+G+S+ ++P Sbjct: 311 GIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVP 353 >gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16] gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16] Length = 520 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 185/344 (53%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-----LAE 65 I A++E+GY T +Q + L+ D+L AQTG+GKT F L + L Sbjct: 12 IVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQLLSDSAARGA 71 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 N PA P+ AL + PTRELA QV + + V GGV ++ + L+ G Sbjct: 72 NGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGINPQIEQLKRG 131 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVV TPGRL DH+ + +++S ++ +VLDEAD MLD+GF DI IL+ P KR+ L+ Sbjct: 132 VEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKILNVLPAKRQNLL 191 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT S I LA + + +A N +D R V + + +++R H Sbjct: 192 FSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRELLAHLVRQHDW 251 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ +R + L + +A+ G SQ R+ AL + G R+ +ATD+A Sbjct: 252 HQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKSGTLRLLVATDIA 311 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ Sbjct: 312 ARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLV 355 >gi|114048383|ref|YP_738933.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113889825|gb|ABI43876.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 433 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 197/354 (55%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+S+ GY +T +Q+ + R +DVL SAQTG+GKT AF L + ++ Sbjct: 6 FSFCPEIL-RAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 EN + S L + PTRELA QV +E V GGV V + + L+ Sbjct: 65 -ENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA I+V TPGRL +H+ L++S + +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFNADIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + V+ + S ++Q++ D + +V ++ + G Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG 240 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KN +VF +TR + K L + GE +Q R AL+ G+ RV +A Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+P LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354 >gi|257055065|ref|YP_003132897.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] gi|256584937|gb|ACU96070.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] Length = 449 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 187/360 (51%), Gaps = 5/360 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + AL + G +Q A L L +DVL AQTGSGKT+AFGLAL S L Sbjct: 26 NLPKALHRALRKAGLHTPFPIQAATLPDALAGRDVLGRAQTGSGKTLAFGLALLSRLDGG 85 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P AL + PTRELA+QV L L G+ +GG+S+ R+ L G Sbjct: 86 KAR---PRRPRALVLVPTRELAMQVADALVPLAKAMGLWCRTVVGGMSLQRQAEALLRGV 142 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+ TPGRL DH+R + ++ V +DEAD+M D+GF + ILD +P + L+F Sbjct: 143 DLVIATPGRLSDHVRQGTCTLDGIELVAIDEADQMADMGFLPQVRQILDRTPPDGQRLLF 202 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ A+ L Y D V ++A +++ V D+ + I G Sbjct: 203 SATLDDAVADLVSRYLTDPVTHSVAPVTASVDTMEHHLFQVEHKDKQAVVTEIAARQG-- 260 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ V R T L AL G +Q +R+ L R GR V +ATDVAA Sbjct: 261 RTILFVRTKHHVDRLTTRLRAAGVPAAALHGGKTQGQRNRVLADFRSGRMPVLVATDVAA 320 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + + LV+H + +++ ++ LHR+GRT RAG G V ++ + +R R+ A V Sbjct: 321 RGIHVDGIGLVLHVDPAADHKDYLHRAGRTARAGASGTVVTLVTREQRRTVRRMLERAGV 380 >gi|228933771|ref|ZP_04096617.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825843|gb|EEM71630.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 451 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 9 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 61 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 62 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 122 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE + I+ R + + +A+ ++ Sbjct: 182 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 242 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 302 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 >gi|153215195|ref|ZP_01949876.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587] gi|153831172|ref|ZP_01983839.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39] gi|124114840|gb|EAY33660.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587] gi|148873341|gb|EDL71476.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39] gi|327485046|gb|AEA79453.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae LMA3894-4] Length = 460 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 211/366 (57%), Gaps = 10/366 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ +T +Q L L+ +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA QV ++ L A + V GG+ + + L++GAH Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT +I +A++ ++A+ + + + + S Y + + RD A+ +L +H + Sbjct: 186 ATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAAR Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ +++ Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365 Query: 367 VVWEPA 372 + EP+ Sbjct: 366 I--EPS 369 >gi|327254038|gb|EGE65667.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_7v] Length = 432 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 12/365 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ A L L KDV V A+TGSGKT AFGL L + A + AL + P Sbjct: 1 MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKIDASLFQTQ------ALVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL DH++ Sbjct: 55 TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AIT ++ Sbjct: 114 KGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAITAISGRV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 L + ++L G+L Q++R L +G ARV +ATDVAARG+D+ LELV++ E Sbjct: 233 CDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 L+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P +I Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPVNSSIV 351 Query: 380 ERDAQ 384 +A+ Sbjct: 352 PLEAE 356 >gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4] gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4] Length = 517 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 187/347 (53%), Gaps = 10/347 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY T +Q + L +DVL AQTG+GKT AF L + + L R A Sbjct: 14 QAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGRAR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV E + VA+ IGGVS + L G +++ TP Sbjct: 71 RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT+ P Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNA 247 I LA + + RV +A + I+ R LVA + +LR+ +N Sbjct: 191 IERLADMFLHNPQRVEVARPASTATTIEQR--LVATGAEGHEKRKVLRHLIRSASELQNG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+ + V++ + L H F AL G++ Q+ R AL R G + +A+DVAARG Sbjct: 249 IIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 +D+P + V + ++ +PE+ +HR GRTGRAGR G + + ++ +R Sbjct: 309 LDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDER 355 >gi|317404315|gb|EFV84742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54] Length = 413 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/374 (34%), Positives = 195/374 (52%), Gaps = 6/374 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L+ D+L +AQTG+GKT F L + L+ A Sbjct: 19 AIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHLLMQSKPEARKAG 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTREL QV ++ T + V GGV+++ + L+ I+V TPG Sbjct: 79 RPRCLILTPTRELTAQVAESVQTYGKHTSLTSMVMFGGVNINPQISALRKPLDILVATPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT S I Sbjct: 139 RLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATFSDEI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +LA+ + V++ N + LV + + I +I+R G +VF T Sbjct: 199 RSLARGVLNNPGEVSVTPRNTATELVTQTVHLVEQHHKRDLISHIIRESGWHQVLVFTRT 258 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + A+ G SQ R+ AL +DG V +ATD+AARG+D+ L Sbjct: 259 KHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDGTVTVLVATDIAARGLDIDQL 318 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR---EANVSV 367 V++ EL + PE+ +HR GRTGRAG G +V ++ + + + ERL + E Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKDIERLIKKTIERKPVA 378 Query: 368 VWEPAPSVEAIRER 381 W P + A ER Sbjct: 379 DWTPPATSAAAFER 392 >gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001] Length = 480 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 191/340 (56%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A + GY T +Q + L +D++ A+TGSGKT AF L + LL + F Sbjct: 65 DACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKTAAFALPVIQALLEKPQAF--- 121 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+G++ E L + + AV +GG+ + + L H++V TP Sbjct: 122 ---FGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPHVIVATP 178 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ + KG ++ LK +V+DEAD +LD+ F I+ IL P++RR +FSAT+S Sbjct: 179 GRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTFLFSATMSS 238 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +L + +D VRV+I+S Q S + + + +D +V + K +VF Sbjct: 239 KIESLQRASLRDPVRVSISSNKYQTVSTLLQYYLFIPHQLKDTYLVYLANEFAGKKLVVF 298 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T + R +L F + L G+L+Q R AL R G + +ATDVAARG+D+ Sbjct: 299 TRTVSETQRLAILLRTLGFGAIPLHGQLNQTARLGALNKFRAGERSILVATDVAARGLDI 358 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++VI+ +L+ + + +HR GRT RAG+ G+++ ++ Q Sbjct: 359 PLVDVVINHDLAQDSKTHVHRIGRTARAGKSGIALSLVTQ 398 >gi|296105809|ref|YP_003617509.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99 Alcoy] gi|295647710|gb|ADG23557.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99 Alcoy] Length = 414 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 184/338 (54%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + A+SE GY N TS+Q + L D+L SAQTG+GKT +F L + A + Sbjct: 12 LNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQK--ASQQTQT 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + L + PTRELA+QV + + AV GGV H + + L +G I+V Sbjct: 70 SRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + + +VLDEAD MLD+GF DI+ I+ P KR+ L+FSAT + Sbjct: 130 TPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSATFT 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P + TLA+N AV ++IA N I V + + + ++L + +VF Sbjct: 190 PEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ K LAE VA+ G SQ +R+ AL + G+ + IATD+AARGID+ Sbjct: 250 SRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L PE+ +HR GRTGRAG G++V ++ Sbjct: 310 EKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLV 347 >gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060] gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060] Length = 528 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L D+L AQTG+GKT AFG+ L ++ + Sbjct: 34 QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 86 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 87 QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTP 146 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 147 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 206 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI L + + K A ++ I + N + SD ID +V ++ + N L H + AIV Sbjct: 207 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 264 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D Sbjct: 265 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 324 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 325 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 368 >gi|229156050|ref|ZP_04284149.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342] gi|228627371|gb|EEK84099.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342] Length = 454 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 121/354 (34%), Positives = 192/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + + E Sbjct: 12 ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R LQ Sbjct: 71 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLQGNT 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + V + SE + I+ R + + +A+ ++ Sbjct: 186 SATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 359 >gi|127511273|ref|YP_001092470.1| ATP-dependent RNA helicase RhlB [Shewanella loihica PV-4] gi|189040043|sp|A3Q9R3|RHLB_SHELP RecName: Full=ATP-dependent RNA helicase rhlB gi|126636568|gb|ABO22211.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 435 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 124/343 (36%), Positives = 193/343 (56%), Gaps = 13/343 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL E G+ T +Q L L KD+ AQTG+GKT+AF +A + LL + Sbjct: 20 IQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFNHLLT-----T 74 Query: 71 PA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 P + P A+ +APTRELA+Q+ ++ E L TG+ V + GG S +R+ L G Sbjct: 75 PIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYGGESYEVQRKVLDKG 134 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182 I++GT GR+ D++R +N+S ++AVVLDEAD M DLGF DI F+ P +R Sbjct: 135 VDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDANERLN 194 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT+S + LA ++ D +V IA + +I ++ D+ ++ ++ Sbjct: 195 MLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSMEDKMRLLLTLIEED 254 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + AIVF +T+ S L +V L+G++ Q++R L+ G + +ATD Sbjct: 255 WPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILEQFTKGELDILVATD 314 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+ + D+ V + +L + E+ +HR GRTGRAG+KG+SV Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSV 357 >gi|15642559|ref|NP_232192.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587883|ref|ZP_01677639.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80] gi|153819936|ref|ZP_01972603.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457] gi|153823551|ref|ZP_01976218.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33] gi|227082681|ref|YP_002811232.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2] gi|254225949|ref|ZP_04919551.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51] gi|254851104|ref|ZP_05240454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10] gi|255744466|ref|ZP_05418418.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101] gi|262154711|ref|ZP_06028837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1] gi|298500611|ref|ZP_07010415.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757] gi|9657150|gb|AAF95705.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547853|gb|EAX57938.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80] gi|125621575|gb|EAZ49907.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51] gi|126509518|gb|EAZ72112.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457] gi|126518935|gb|EAZ76158.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33] gi|227010569|gb|ACP06781.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2] gi|254846809|gb|EET25223.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10] gi|255737991|gb|EET93384.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101] gi|262030551|gb|EEY49189.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1] gi|297540780|gb|EFH76837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757] Length = 460 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 211/366 (57%), Gaps = 10/366 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ +T +Q L L+ +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA QV ++ L A + V GG+ + + L++GAH Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT +I +A++ ++A+ + + + + S Y + + RD A+ +L +H + Sbjct: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAAR Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ +++ Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365 Query: 367 VVWEPA 372 + EP+ Sbjct: 366 I--EPS 369 >gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii B565] gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565] Length = 633 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 203/372 (54%), Gaps = 13/372 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + GY + +Q A + + D+L AQTG+GKT AF L L S L A N Sbjct: 21 KALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSRLEAGNRNTQ-- 78 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L +APTRELA+QV + + + V GG S + R L+ GA +VVGT Sbjct: 79 ----ILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRRGAQVVVGT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D IR K L++S LKA+VLDEADEML +GF DD+++I++ P R++ +FSAT+ Sbjct: 135 PGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVALFSATMPE 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + K + IAS+ + I R V + +A+ +L + +VF Sbjct: 195 QIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVESYEALLVFV 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + LA AL G++ Q+ R + +R G+ + IATDV ARG+D+ Sbjct: 255 RTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGLDVE 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V++ ++ + E+ +HR GRTGRAGRKG ++ FV P+ +RR R A + E Sbjct: 315 RITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPR--ERRMLRAIEHATRQAI-E 371 Query: 371 P--APSVEAIRE 380 P PS E I + Sbjct: 372 PMKMPSTEDINQ 383 >gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599] gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599] Length = 489 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 123/336 (36%), Positives = 190/336 (56%), Gaps = 2/336 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY N T +Q + L +D+L +AQTG+GKT F L + LL + Sbjct: 27 ALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQRLLDNPMQTRKPG 86 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132 P L + PTREL QV ++ YAK + +V I GGVS++ + + L+ I+V TP Sbjct: 87 RPRCLILTPTRELTAQVEESVK-AYAKYTRIRSVLIFGGVSINPQIQALRQPVDILVATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ +++S ++ VLDEAD MLD+GF DI ++ P KR+ L+FSAT SP Sbjct: 146 GRLLDHVQQGTVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKLPAKRQNLLFSATFSPE 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +LA + V++A N + A LV + + + ++ K +VF Sbjct: 206 IRSLAHGLLDNPAEVDVAPRNTASELVAQSAHLVPKTRKRALLSYLIGSRRWKQVLVFTK 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L + + +A+ G SQ R+ AL +DG V +ATD+AARG+D+ + Sbjct: 266 TKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSLPVLVATDIAARGLDIDE 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL + PE+ +HR GRTGRAG +G +V ++ Sbjct: 326 LPHVVNYELPNVPEDYVHRIGRTGRAGHEGTAVSLV 361 >gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW] gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW] Length = 528 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 131/377 (34%), Positives = 208/377 (55%), Gaps = 9/377 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ +A+ E G+ T +Q+ L L +DV+ SA TG+GKT AF L + +A Sbjct: 16 LPHLL-KAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLP-SLQRIATT 73 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P L + PTRELA QV + L + +GG+ ++ L+ Sbjct: 74 ARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEMLRRRVD 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL DH+ L++S ++ +VLDEAD MLD+GFR+ +EFI + P +R+ L+F+ Sbjct: 134 LIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAERQTLLFT 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245 AT+ LA+ +D VR+++A + + ++ R + L + + +L Sbjct: 194 ATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETLLGGEEFG 253 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF +T+ R L+E + + L G++ Q++R+ +Q +RDGR V +ATDVAA Sbjct: 254 KGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVIVATDVAA 313 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNMQRRAERLF--R 361 RGID+ DL VI+ +L E+ +HR GRTGRAG G+ S+F + Q RA + + Sbjct: 314 RGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVRAIEAYTNK 373 Query: 362 EANVSVV--WEPAPSVE 376 A++ V+ EP P E Sbjct: 374 AADMHVLPGLEPMPEPE 390 >gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis RP62A] gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis M23864:W2(grey)] gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus epidermidis RP62A] gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis M23864:W2(grey)] gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus epidermidis VCU144] gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus epidermidis VCU045] Length = 509 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 68 QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI L + + K A ++ I + N + SD ID +V ++ + N L H + AIV Sbjct: 188 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|254461770|ref|ZP_05075186.1| ATP-dependent RNA helicase DeaD [Rhodobacterales bacterium HTCC2083] gi|206678359|gb|EDZ42846.1| ATP-dependent RNA helicase DeaD [Rhodobacteraceae bacterium HTCC2083] Length = 450 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 4/340 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSPAS 73 L E G T +Q + L DVL AQTG+GKT AFGL L TLL+EN R SP + Sbjct: 20 LKELGLTTPTPIQARAIPEALNGHDVLGLAQTGTGKTAAFGLPLI-TLLSENPGRPSPKT 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA Q+ L+ T + VA+ +GG S++ + + L+ G I+V TPG Sbjct: 79 V-RALILAPTRELAGQIVENLKDYTKGTPIKVALVVGGQSINVQSKRLEKGIDILVATPG 137 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + L + +VLDEAD+MLD+GF + I P++R+ ++FSAT+ + Sbjct: 138 RLIDLMDRRALTLKESHFLVLDEADQMLDMGFIHALRQIAAVLPEQRQTMLFSATMPKLM 197 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +A Y K R+ ++ + + +A +++ + ++ +L H + A+VF T Sbjct: 198 NEIANTYLKSPKRIQVSPPGKAADKVTQVVHFIAKTEKQSLLIELLGAHKDERALVFGRT 257 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + K L F ++ G SQ +R AL + G +V +ATDVAARG+D+PD+ Sbjct: 258 KHGCEKLMKQLVARGFAATSIHGNKSQGQRERALAAFKAGEMKVLVATDVAARGLDIPDV 317 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + EL + P+ +HR GRT RAG+ G ++ F P M Sbjct: 318 RHVYNYELPNVPDAYVHRIGRTARAGKDGAAIAFCAPDEM 357 >gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4] gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium chloromethanicum CM4] Length = 519 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 187/347 (53%), Gaps = 10/347 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY T +Q + L +DVL AQTG+GKT AF L + + L R A Sbjct: 14 QAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGRAR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV E + VA+ IGGVS + L G +++ TP Sbjct: 71 RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT+ P Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNA 247 I LA + + RV +A + I+ R LVA + +LR+ +N Sbjct: 191 IERLADMFLHNPQRVEVARPASTATTIEQR--LVATGAEGHEKRKVLRHLIRSASELQNG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+ + V++ + L H F AL G++ Q+ R AL R G + +A+DVAARG Sbjct: 249 IIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 +D+P + V + ++ +PE+ +HR GRTGRAGR G + + ++ +R Sbjct: 309 LDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDER 355 >gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 605 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 196/358 (54%), Gaps = 15/358 (4%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66 Q I +AL++ G + +Q L L+ D++ A+TG+GKT+ FG+ L + ++A Sbjct: 77 QEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPLLNRVVAPGEP 136 Query: 67 --DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQN 123 D P A+ +APTRELAVQV +L A + + V GG + + LQ Sbjct: 137 GWDELVAPGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRAYEPQIEQLQR 196 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VVGTPGR+ D + LN+ + +VLDEADEMLDLGF D+E IL P KR + Sbjct: 197 GAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKILSRLPAKRHTM 256 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVN 237 +FSAT+ A+ ++A+ Y + A + + + YRA + D+ + Sbjct: 257 LFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYRAHAL---DKIEVLAR 313 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L+ G +IVF T+ + ++ + L + F A+ G+L Q R AL+ +R G+ V Sbjct: 314 LLQAEGRGRSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRALRHGKIDV 373 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 +ATDVAARGID+ D+ V++ + + LHR GRTGRAG KG +V FV +M R Sbjct: 374 LVATDVAARGIDVDDVTHVVNYQCPEDERTYLHRVGRTGRAGNKGTAVTFVDWDDMPR 431 >gi|170742455|ref|YP_001771110.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium sp. 4-46] gi|168196729|gb|ACA18676.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46] Length = 482 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 186/341 (54%), Gaps = 10/341 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+S GY T +Q + L +DVL AQTG+GKT AF L + + L R A Sbjct: 14 QAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPMLTRLEQGRAR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV E + VA+ IGGVS + + G +++ TP Sbjct: 71 RMPRTLILEPTRELAAQVVENFERYGTNHKLNVALLIGGVSFADQDAKITRGVDVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH L ++ ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT+ P Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQTLFFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA---KNA 247 I LA ++ + VR+ +A S I R LVA + LR GA +N Sbjct: 191 IQRLADDFLHNPVRIEVARPASTASTIAQR--LVATGGEGHEKRKTLRGLIRGAVELRNG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++FC+ + V++ + LA H F V AL G++ Q+ R AL R G + +A+DVAARG Sbjct: 249 LIFCNRKRDVAQLQRSLANHGFNVAALHGDMDQRARMAALDAFRSGEVPLLVASDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+P + V + ++ + E+ +HR GRTGRAGR G + ++ Sbjct: 309 LDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRSGAAFTLV 349 >gi|59801077|ref|YP_207789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090] gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae NCCP11945] gi|239999112|ref|ZP_04719036.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02] gi|240113089|ref|ZP_04727579.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11] gi|240125882|ref|ZP_04738768.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679] gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62] gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090] gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae NCCP11945] gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62] gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae TCDC-NG08107] Length = 462 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL +APTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD+ + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPARKR 383 >gi|88856781|ref|ZP_01131435.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] gi|88813949|gb|EAR23817.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] Length = 499 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 119/350 (34%), Positives = 195/350 (55%), Gaps = 17/350 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI Q + +AL+ +G + +Q + L +D++ A+TG+GKT+ FGL + +L Sbjct: 7 NIDQDMVDALATKGILEPFPIQTQTIPMGLAGQDIIGQAKTGTGKTLGFGLPVLQSL--- 63 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P AL + PTREL VQV +L + +A GG + + +++GA Sbjct: 64 --GINPEPGVKALIVVPTRELCVQVAEDLVLAASNRSTKIAAIYGGKAYEGQVEQIKDGA 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGRL D + L++ +K +VLDEAD+MLDLGF DIE + +P R ++F Sbjct: 122 QVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKMLDLGFLADIEKLFAQTPPTRHTMLF 181 Query: 186 SATISPAITTLAKNYQKDAVRV-------NIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 SAT+ I LA+ + + + + +N +H + YRA + D+D I I Sbjct: 182 SATMPGPIVALARRFMNKPIHIRATDPDEGLTQKNIKH--VVYRAHNL---DKDEVIARI 236 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ G +VF T+ + ++ + L + F A+ G+L+Q++R A+ + G+ + Sbjct: 237 LQSEGRGKTVVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDIL 296 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 IATDVAARGID+ D+ VI+ + + + LHR+GRTGRAG+ G++V + Sbjct: 297 IATDVAARGIDVNDVTHVINHTIPDDHDTYLHRAGRTGRAGKTGVAVTFV 346 >gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis SK135] gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis SK135] gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus epidermidis VCU028] Length = 509 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 68 QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI L + + K A ++ I + N + SD ID +V ++ + N L H + AIV Sbjct: 188 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|148272372|ref|YP_001221933.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830302|emb|CAN01236.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 509 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 189/345 (54%), Gaps = 7/345 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + + +AL++ G + +QE + L +D++ A+TG+GKT FGL L L Sbjct: 7 NIDEDMVQALADHGILEPFPIQEQTIPLALSGQDIIGQAKTGTGKTFGFGLPLIQRL--- 63 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P AL + PTRELAVQV +L+ V GG + + L+ GA Sbjct: 64 --GLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTVVSIYGGKAYEGQIEQLKAGA 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGRL D + + L++ +++ +VLDEAD+MLDLGF DIE + +P R ++F Sbjct: 122 QIVVGTPGRLLDLVGQRLLSLQNVREMVLDEADKMLDLGFLSDIEKLFAQTPAVRHTMLF 181 Query: 186 SATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 SAT+ I LA+ + +R E ++I + D+D I IL+ G Sbjct: 182 SATMPGPIVALARRFMTKPIHIRATDPDEGLMQANIRHLVYRAHNMDKDEVIGRILQAEG 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F T+ + +R + L + F A+ G+L+Q++R A+ + G+ + IATDV Sbjct: 242 RGKTVIFTRTKRAAARLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILIATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ D+ VI+ + + + LHR GRTGRAG+ G++V + Sbjct: 302 AARGIDVLDVTHVINHTIPEDDKAYLHRVGRTGRAGKTGIAVTFV 346 >gi|319427542|gb|ADV55616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 469 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E LS GY +T +Q L P L +DV+ +TGSGKT AFGL L + L + Sbjct: 21 PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 79 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R L + PTRELA QV +E+ L V V GGV + + L++GAH Sbjct: 80 RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I++ +P++R+ L+FS Sbjct: 134 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243 AT I ++AK D V + H + L D R A+ +L H Sbjct: 194 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 250 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++A+VFC+T+ + L F V+AL G+L Q++R L + A V +ATDV Sbjct: 251 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 310 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 AARG+D+ L+ V + ++ + E +HR GRTGRAG KG Sbjct: 311 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 349 >gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-049-V-Sch6] gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica ACS-049-V-Sch6] Length = 523 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 186/341 (54%), Gaps = 7/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ G+ T +Q+ + + KD++ AQTG+GKT AFGL + + N Sbjct: 17 ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGSNRHVQ--- 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + ++PTRELA+QV EL + T + GG ++R+ R L+ I+V TPG Sbjct: 74 ---VVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKNPQIIVATPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + +K VVLDEADEML++GF DDI IL + P+ + L+FSAT+ I Sbjct: 131 RLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKTI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ Y + + + I+ + V + + + + + AI+F T Sbjct: 191 RELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDLQAPELAIIFTRT 250 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V T+ L + + + G+LSQQ+R + ++ R+G + +ATDVAARG+D+ + Sbjct: 251 KRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 V + +L +PE+ HR GRTGRAG+ G + FVIP+ ++ Sbjct: 311 SHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIE 351 >gi|310657448|ref|YP_003935169.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium sticklandii DSM 519] gi|308824226|emb|CBH20264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium sticklandii] Length = 411 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 193/331 (58%), Gaps = 11/331 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T VQ + L +DV+ AQTG+GKT+AF L + + +++ AL I+PT Sbjct: 27 TQVQVKSIPYILEGRDVIAQAQTGTGKTLAFLLPILEKIDVDSEDTQ------ALIISPT 80 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA+Q+ E + L + G+ + GG V ++ L+ +VVGTPGR+ D IR + Sbjct: 81 RELAIQISEEAQKLISVKGINILSAYGGQDVEKQLNKLKKNIPLVVGTPGRILDLIRRES 140 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 LN+S LK +VLDEAD+ML +GF D+++ I +P +++++ FSAT + + LAK Y + Sbjct: 141 LNLSKLKMLVLDEADQMLHMGFLDEVDAIFSYTPSEKQVMCFSATFNKEVKKLAKTYMNE 200 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 V++ +N +ID ++V +DR A+ ++ AIVFC T+ V+ Sbjct: 201 PHYVSVKGQNVTLDEID--QIIVHTTDRKKQEALCEMIDTQQPFMAIVFCRTKRRVTALY 258 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 + L++ + L G+LSQ +R ++ R+ + ++ IATDVAARGID+ + + + ++ Sbjct: 259 EDLSQKGYNCDQLHGDLSQAKREKVMKDFRNAKIQLLIATDVAARGIDVDGITHIYNYDM 318 Query: 322 SSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 + + +HR GRTGRAG KG +V FV P++ Sbjct: 319 VLDTDTYIHRIGRTGRAGEKGTAVTFVTPKH 349 >gi|117921427|ref|YP_870619.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117613759|gb|ABK49213.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 433 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 197/354 (55%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+S+ GY +T +Q+ + R +DVL SAQTG+GKT AF L + ++ Sbjct: 6 FSFCPEIL-RAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 EN + S L + PTRELA QV +E V GGV V + + L+ Sbjct: 65 -ENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA I+V TPGRL +H+ L++S + +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + V+ + S ++Q++ D + +V ++ + G Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG 240 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KN +VF +TR + K L + GE +Q R AL+ G+ RV +A Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+P LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354 >gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis DSM 9187] gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 642 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 180/609 (29%), Positives = 294/609 (48%), Gaps = 69/609 (11%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 I +A++ GY + + +Q A + P L +D+L AQTG+GKT AF L + S L L + D Sbjct: 19 ILKAVAAVGYEDPSPIQAAAIPPLLEGRDLLGQAQTGTGKTGAFALPILSRLNLTQMDT- 77 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHI 127 L +APTRELA+QV + YA+ V GG S + R L+ GA + Sbjct: 78 ------QVLILAPTRELAIQVAEACQS-YAQFIPDFHVLPIYGGSSYDSQLRALRRGAQV 130 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ D +R L++S LK +VLDEADEML +GF DD+E++++ P R++ +FSA Sbjct: 131 VVGTPGRVMDMMRRGKLDLSALKTLVLDEADEMLRMGFIDDVEWVIEQCPLDRQIALFSA 190 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I +A + K V + IAS+ ++I R LV+ + +A+ +L Sbjct: 191 TMPEQIRRIAHRHLKTPVEIKIASKTSTAANIRQRYWLVSGLHKLDAMTRMLEVEQYDAL 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ + T L+ AL G++ Q+ R ++ ++ G+ + IATDVAARG Sbjct: 251 LVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDILIATDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS 366 +D+ + V++ ++ + E+ +HR GRTGRAGR G ++ FV P+ +RR R+ +A Sbjct: 311 LDVERITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVAPR--ERRMLRMIEQATRQ 368 Query: 367 VVWEP--APSVEAIR-----------------ERDAQRILQ-----------DPLFLDS- 395 + EP P+ + I E D Q Q DPL L + Sbjct: 369 PI-EPMQMPTAKDINKHRLERFKLQIRETLDSEEDLQPFQQIINEFLEDESTDPLDLCAA 427 Query: 396 ----IQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRD 448 +QGDE + + +++PE R+ G G DRF Sbjct: 428 LAKMVQGDEP----LFMNENEPEPSQ----RMEERGGDRFDRDRGARRDRNDRGGDRFER 479 Query: 449 DSRAFKVGGGSRDNFKG-SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507 + +G ++ + L VG + + ++ + +GI+ + IG I + D Sbjct: 480 GGDRPERSERRSRAPEGPTARYKLHVGHEHGVKPGQIVGAIANEAGIDSKFIGHIEIYND 539 Query: 508 LTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDF--RGYKSSGFKSKNSQDGA- 560 T V++ + ++ L++ + + ++ GE P+ R S G + DGA Sbjct: 540 FTTVDLPEGMPTEVMNTLKKARVCQRPLDIELFSGEVPESARRARPSFGDRRPPRADGAR 599 Query: 561 TKRFKRFKG 569 T+ F+G Sbjct: 600 TEGRGEFRG 608 >gi|288818118|ref|YP_003432466.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6] gi|288787518|dbj|BAI69265.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6] gi|308751719|gb|ADO45202.1| DEAD/DEAH box helicase domain protein [Hydrogenobacter thermophilus TK-6] Length = 365 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 121/347 (34%), Positives = 195/347 (56%), Gaps = 9/347 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ + +++ +A+ + GY T +Q+ + L+ D++ A TG+GKT AFG+ + Sbjct: 5 FQQLSEILQKAIRDLGYEEPTPIQKEAIPLALKGYDIMGQAATGTGKTAAFGIPIV---- 60 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 ++ S AL + PTRELA+QV +L L + V V GG V R+ L Sbjct: 61 ---EKISKDDGLKALVLTPTRELALQVKEQLYALSKYKALKVFVFYGGTPVRRDLELLSK 117 Query: 124 GA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 +IV+GTPGR+ D + LN+ + +VLDEAD MLD+GF +DIE I+ +PK R+ Sbjct: 118 VVPNIVIGTPGRIKDLLSRGVLNLGGVSFLVLDEADLMLDMGFVEDIESIIAYTPKDRQT 177 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRY 241 +FSATI I LA+ + KD + I+ R + L + + + + ILR Sbjct: 178 FLFSATIPKEIELLARKHLKDDYKFVRVISAELKPKIEERLIRLNSSKQKISELERILRE 237 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 H + I+F T+ ++ L F VV+L G+++Q++R NAL++ R+G+ + +AT Sbjct: 238 HLLEKVIIFVRTKKDARDISQELKNRGFSVVSLHGDMTQRQRENALKLFREGKVKTVVAT 297 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVA+RG+D+ + LVI+ ++ +PE +HR GRTGR G G + +I Sbjct: 298 DVASRGLDIKGVSLVINYQIPEDPEVYIHRIGRTGRVGSYGKAYSLI 344 >gi|237793963|ref|YP_002861515.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str. 657] gi|229261675|gb|ACQ52708.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str. 657] Length = 425 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 193/346 (55%), Gaps = 4/346 (1%) Query: 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FEN I + I +AL E GY T +QE + L KD++ AQTG+GKT AF + + Sbjct: 2 LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61 Query: 61 TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 L +++ + + P+ AL +APTRELA+Q+ E + V GGVS + + + Sbjct: 62 NL-SKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSVVIFGGVSQNPQTK 120 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G I++ TPGR+ D K +++ +++ VLDEAD MLD+G D++ I+ PK Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKI 180 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ IT L + KD +RV + + I V + + ++L Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLL 240 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++A+VF +T+ + K L E + A+ G SQ R AL ++G+ RV + Sbjct: 241 KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLV 300 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATD+AARGID+ +L V + L PE +HR GRTGRAG KG+++ Sbjct: 301 ATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346 >gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 408 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 195/350 (55%), Gaps = 9/350 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ +ALS+ T +Q + L+ KD+L SAQTG+GKT+AF + L + L+ E Sbjct: 9 LPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLMNE- 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125 S AL I PTRELA QV E+ L +++ ++ VA+ IGG + R+ LQ Sbjct: 68 -----PSIGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQKKP 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++GTPGR+ DHI K L ++ +VLDE D M D+GF IE I+ PK R+ LMF Sbjct: 123 QIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQTLMF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L + Y RV++ + I V + S++ +V L Sbjct: 183 SATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVVYASESEKYGKLVTQLCQRKG- 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + I+F T+ + L + + +A+ G+L Q +R + R GR ++ +ATDVA+ Sbjct: 242 SIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVAS 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 RG+D+P ++ VI+ ++ + + +HR GRT RAG +G ++ FV PQ+ +R Sbjct: 302 RGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRR 351 >gi|166711813|ref|ZP_02243020.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 458 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 141/413 (34%), Positives = 212/413 (51%), Gaps = 16/413 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P LR DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + H+VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT I LA+ KD + + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPHIIRALAREILKDPIEITVEGADNA-PEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFTPESSVVFCNTRKEVDEVAGSLHEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R + L +D + D+ + D+L Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403 >gi|149204620|ref|ZP_01881585.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035] gi|149141879|gb|EDM29929.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035] Length = 506 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 192/357 (53%), Gaps = 29/357 (8%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + L +DVL AQTG+GKT +F L + S L Sbjct: 11 PKVL-KAIEEAGYETPTPIQAEAIPHALVGRDVLGIAQTGTGKTASFTLPMLSLLSRGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASE-----------------NRQHSDIDYRAVLVALSD 230 T++P I + + + RV +A + R+++D + R +L AL D Sbjct: 187 TMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPSRRENADSEKRKLLRALID 246 Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 R+ A + NAI+FC+ + V K L ++ + + G+L Q +R+ L Sbjct: 247 REGAACS--------NAIIFCNRKIDVDVVAKSLIKYGYDAAPIHGDLDQSQRTRTLDGF 298 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 R G R IA+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G ++ + Sbjct: 299 RAGTLRFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKALMI 355 >gi|110799701|ref|YP_695305.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC 13124] gi|168209167|ref|ZP_02634792.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str. ATCC 3626] gi|110674348|gb|ABG83335.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC 13124] gi|170712632|gb|EDT24814.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str. ATCC 3626] Length = 478 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 202/374 (54%), Gaps = 6/374 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +AL+ GY N + VQEA + L+ +D++V +QTGSGKT +FG+ + + E Sbjct: 7 NLSDDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCEKINIE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L + PTRELA+QV EL + V A G + + R+L+ Sbjct: 67 EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELKQRV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L++S + VV+DEAD+ML +GF D I+ IL + +F Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I + + Y ++ + + + S+ I+ A+ + ++ A+ L + + Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCLYSYHPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AIVFC+TR V K+L + L G++ Q++R ++ RD +V + TD+AA Sbjct: 241 SAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + +ELVI+ E+ E+ +HR GRTGRAGR+G ++ + ++ E + Sbjct: 301 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 360 Query: 366 SVVWEPAPSVEAIR 379 + PS E ++ Sbjct: 361 EIRKASLPSDEEVK 374 >gi|153825787|ref|ZP_01978454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2] gi|254291477|ref|ZP_04962269.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226] gi|149740510|gb|EDM54625.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2] gi|150422667|gb|EDN14622.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226] Length = 460 Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 211/366 (57%), Gaps = 10/366 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ +T +Q L L+ +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA QV ++ L A + V GG+ + + L++GAH Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT +I +A++ ++A+ + + + + S Y + + RD A+ +L +H + Sbjct: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAAR Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ +++ Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365 Query: 367 VVWEPA 372 + EP+ Sbjct: 366 I--EPS 369 >gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha14] gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis alpha14] Length = 462 Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550] gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550] Length = 454 Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ I+ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498] Length = 466 Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 124/343 (36%), Positives = 192/343 (55%), Gaps = 9/343 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +Q + L++KDVL AQTG+GKT +F L + + L E R + A Sbjct: 19 KAIKSAGYTIPTPIQSRTIPHILQKKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARA 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV + + VA+ IGGVS + R L+ GA +++ TP Sbjct: 76 RIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLERGADVLIATP 135 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH RGK L + ++ +V+DEAD ML++GF D+E I +P R+ L FSAT++P Sbjct: 136 GRLLDHFERGKLLLVG-VEILVIDEADRMLNMGFIPDVERICKVTPFTRQTLFFSATMAP 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHG--AKNA 247 I L K + V + I + I R V D+ + +++ G KNA Sbjct: 195 EIAQLTKQFLHSPVYIEITEASSTAKTITQRLVKSGSKSCDKKAVLKELIQNEGDELKNA 254 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC+ + +S + L +H F V L G++ Q R+N L ++ + + IA+DVAARG Sbjct: 255 IIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLIASDVAARG 314 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +D+P + V + ++ ++ E+ +HR GRTGRA R G + ++ + Sbjct: 315 LDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTK 357 >gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus NVH0597-99] gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus NVH0597-99] Length = 458 Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|297581406|ref|ZP_06943329.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385] gi|297534244|gb|EFH73082.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385] Length = 460 Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 211/366 (57%), Gaps = 10/366 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ +T +Q L L+ +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA QV ++ L A + V GG+ + + L++GAH Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT +I +A++ ++A+ + + + + S Y + + RD A+ +L +H + Sbjct: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAAR Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ +++ Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365 Query: 367 VVWEPA 372 + EP+ Sbjct: 366 I--EPS 369 >gi|217972083|ref|YP_002356834.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS223] gi|217497218|gb|ACK45411.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] gi|315266255|gb|ADT93108.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 469 Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E LS GY +T +Q L P L +DV+ +TGSGKT AFGL L + L + Sbjct: 21 PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 79 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R L + PTRELA QV +E+ L V V GGV + + L++GAH Sbjct: 80 RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I++ +P++R+ L+FS Sbjct: 134 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243 AT I ++AK D V + H + L D R A+ +L H Sbjct: 194 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 250 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++A+VFC+T+ + L F V+AL G+L Q++R L + A V +ATDV Sbjct: 251 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 310 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 AARG+D+ L+ V + ++ + E +HR GRTGRAG KG Sbjct: 311 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 349 >gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 852 Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 205/358 (57%), Gaps = 10/358 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +A+++ G+V+ T++Q+ + L +DV+ AQTG+GKT AFGL L + + Sbjct: 153 GLPSDLLKAVTDMGFVSPTAIQKEAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDAVDSR 212 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 + S AL +APTRELA+Q + + A++ G+ V GG + L+ G Sbjct: 213 D------SVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGALKGG 266 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D I L + ++ VLDEADEML +GF +D+E I +S P +RR + Sbjct: 267 AQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPTERRTAL 326 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ PAI +A+ + + V+V ++ + + +V + A+ +L A Sbjct: 327 FSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDA 386 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF T+++ LA Q A+SG++ Q+ER ++ +R G V +ATDVA Sbjct: 387 EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVA 446 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 ARG+D+ + LV++ ++ E +HR GRTGRAGR G +V F+ P+ R+ ERL Sbjct: 447 ARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERL 504 >gi|307545782|ref|YP_003898261.1| ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581] gi|307217806|emb|CBV43076.1| K05592 ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581] Length = 555 Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 188/340 (55%), Gaps = 8/340 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P V+ A+ GY + +Q + L +D+L AQTG+GKT AF L + S L E Sbjct: 17 LPAVL-SAVETLGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKTAAFALPILSRL--EL 73 Query: 67 DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 DR P L +APTRELA QV ++ G+ VA+ GG+ + + L+ GA Sbjct: 74 DRREPQ----VLVLAPTRELAQQVAASFSKYGQNLKGLEVAILCGGMEYRDQMQALRRGA 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ DH+ L + L A+VLDEADEML +GF DD++ ++ +P + + F Sbjct: 130 QVVVGTPGRIIDHLDRGSLKLGGLSALVLDEADEMLRMGFIDDVKRVVADTPVDAQRVFF 189 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I + Y + V+V I S +I+ R V + + A+ IL Sbjct: 190 SATLPTEIERIVNQYLVEPVKVTIESRASSGDNIEQRRVRIDGGAKLEALARILEVEPVD 249 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AIVF TRA+ + + L+ V +LSG+L Q R + ++ G+ V IATDVAA Sbjct: 250 AAIVFVRTRAACTTLMEQLSARGLNVASLSGDLDQSLRERTITRLKRGKIDVLIATDVAA 309 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+P + VI+ +L + E HR GRTGRAGR G+++ Sbjct: 310 RGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRAGVAI 349 >gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis N1568] Length = 462 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|148263018|ref|YP_001229724.1| DEAD/DEAH box helicase domain-containing protein [Geobacter uraniireducens Rf4] gi|146396518|gb|ABQ25151.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens Rf4] Length = 451 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 114/342 (33%), Positives = 195/342 (57%), Gaps = 3/342 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + + ++ G+ T +QE L P L KDV AQTG+GKT AF ++L + LL + Sbjct: 7 NLPEQVLQGIAYTGFTECTPIQEKALPPALAGKDVAGQAQTGTGKTAAFLISLFTRLL-K 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P AL +APTREL VQ+ ++ + L TG + GGV +++ L+ G Sbjct: 66 QEKVGTEHHPRALILAPTRELVVQIEKDAQQLGKHTGFTIQAIYGGVDYMKQKNALKEGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183 IV+GTPGRL D+++ K ++ +++A+V+DEAD M D+GF D+ FIL P +R+ L Sbjct: 126 DIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFDERQNL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT++ + LA + +V + E ++ V+ ++ ++ +LR G Sbjct: 186 MFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVIYHVSRKEKFPLLLGLLRKEG 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F +T+ L + F +SG++ Q++R L+ + G+ + IATDV Sbjct: 246 MERTMIFVNTKREAEFLFDRLNVNDFPARVISGDVEQRKRLRILEDFKSGKLPIMIATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 A+RG+ + + VI+ +L + E+ +HR GRT RAG +G ++ Sbjct: 306 ASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAI 347 >gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] Length = 460 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/342 (36%), Positives = 189/342 (55%), Gaps = 7/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69 I AL E GYV+ T +Q ++ L+ D+L +AQTG+GKT AF L L LL N Sbjct: 13 ILRALDEMGYVSPTPIQAQVIPRALQGGDILGAAQTGTGKTAAFALPLIQRLLPFANTST 72 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SPA P+ AL + PTRELA+QV ++ + V GGV+++ + L+ G I+ Sbjct: 73 SPAKHPIRALILTPTRELAIQVEEAIQAYTKHVPLRSLVVYGGVNINTQIPILKTGVEIL 132 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ K L ++ + +VLDEAD MLD+GF D+ I+ P +R +MFSAT Sbjct: 133 VATPGRLLDHVQNKTLMLTQVNTLVLDEADRMLDMGFMPDLRRIVALLPAQRVNMMFSAT 192 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNILRYHGAKN 246 I LA + + +A R + + V+ V + + ++++ + Sbjct: 193 FPEEIRKLADSILSTPTFIEVA---RNETAVTVTQVVHPVHHERKRQLLAHLIKSRDLRQ 249 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R L + A+ G+ +QQER AL + G RV +ATDVAAR Sbjct: 250 VLVFTGTKLGCNRLANELNKAGIHADAIHGDKTQQERIKALDAFKAGTIRVLVATDVAAR 309 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ L V++ +L N E+ +HR GRTGRAG KG ++ ++ Sbjct: 310 GIDIEALPFVVNYDLPHNAEDYVHRIGRTGRAGAKGEAISLV 351 >gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria AMMD] gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD] Length = 512 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 143/400 (35%), Positives = 211/400 (52%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALAST 61 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L A Sbjct: 45 PEIV-SALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 103 Query: 62 LLAENDRF--------------SPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 LA+ R P + P L + PTRELA+QV G+ L+ L Sbjct: 104 TLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 163 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDIE I+ ++P R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 218 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEI--QQRLESRTN 275 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ F+ AL G+ Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371 AGR G +V ++ Q +R ER R NV +EP Sbjct: 396 AGRSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 435 >gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42] gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42] Length = 454 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus D139] gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus D139] Length = 506 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 188/342 (54%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 69 -GVQSLILAPTRELAMQVAERLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|281358292|ref|ZP_06244774.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC BAA-548] gi|281315119|gb|EFA99150.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC BAA-548] Length = 542 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 122/329 (37%), Positives = 184/329 (55%), Gaps = 2/329 (0%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q L L +D+ AQTG+GKT AF LA+ + LL P AL Sbjct: 144 GFEYCTPIQALTLPALLEGRDLAGKAQTGTGKTAAFLLAVFTRLLNHPLEERKPGCPRAL 203 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA+Q+ ++ E L TG+ V GG+ ++RR L+ +V+GTPGR+ D+ Sbjct: 204 VLAPTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHEKQRRSLEQPVDLVIGTPGRIIDY 263 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTL 196 RG L +S ++ +V+DEAD MLD+GF D++ I+ P+K R+ L+FSAT+ I L Sbjct: 264 SRGGSLKLSKVEVLVIDEADRMLDMGFIPDVKRIVSQLPRKGERQTLLFSATLEDHILRL 323 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 A + + V V E +I+ V ++ ++ ILR ++F + + Sbjct: 324 ASGWLAEPVIVESEPEKMVSENIEQTFYSVLRDEKLALLLYILRTEPYDRVLIFGNRKDV 383 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 R LA ++V LSG++ Q++R L+ R G ++ IATDVAARGI + D+ LV Sbjct: 384 NLRLQYDLARFGYEVPVLSGDIPQEKRIKVLERFRAGTEKIVIATDVAARGIHVDDVSLV 443 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345 I+ +L E+ +HR GRTGRAG G S+ Sbjct: 444 INYDLPERAEDYVHRIGRTGRAGHNGKSI 472 >gi|238927921|ref|ZP_04659681.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC 43531] gi|238884254|gb|EEQ47892.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC 43531] Length = 426 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 127/393 (32%), Positives = 204/393 (51%), Gaps = 18/393 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 I + + L ++G T VQE + P +DV+ AQTG+GKT+A+ L L + Sbjct: 8 GISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLA----- 62 Query: 66 NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 R P +A AL IAPTRELA+Q+ L G+ V GG + R++ L+ Sbjct: 63 --RIKPQGAAAQALVIAPTRELAIQIEHVAASLAEPLGIGTTVIYGGADIERQKEKLRRS 120 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +V+GTPGRL DH+R L + + VVLDEADEML +GF +D+E +L ++ + ++ + Sbjct: 121 PQLVIGTPGRLLDHVRRGTLALGRVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLAL 180 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I L K + + + +A E + I+ + V+ D+ + + + Sbjct: 181 FSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCASINEEAP 240 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A+VFC+T+ LA+ + V ALSG+L+Q +RS L+ R + ++ ATD+A Sbjct: 241 YLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATDIA 300 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----- 359 ARG+D+ + V + +L + +HR GRTGRAG +G ++ ++ + + ++ Sbjct: 301 ARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRKMEAALK 360 Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQDP 390 R V PAP E DAQ+ P Sbjct: 361 ACLRRDVVKKKKRPAPPAG---EGDAQKKAHPP 390 >gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1] gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1] Length = 457 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 183/336 (54%), Gaps = 1/336 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ ++GY + T +Q+ + + KDVL +AQTG+GKT F L L L + + Sbjct: 14 KAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLERLSETHPKMGKK 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + L + PTRELA QV ++ V GGV ++ + ++ G IV+ TP Sbjct: 74 QIRV-LVLTPTRELAAQVAESIKTYGKYMKYTSTVVYGGVGINPQLATIRRGVDIVIATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +G++ S L+ +VLDEAD MLD+GF DI+ ++ PK+R+ L+FSAT S Sbjct: 133 GRLLDIAGQQGIDFSALETLVLDEADRMLDMGFIHDIKKLMKMMPKERQTLLFSATFSLE 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA K+ V V +A EN I V S + + +++ + +VF Sbjct: 193 IKKLASGLLKNPVLVEVARENTTADQISQVVHFVDKSRKRELLSQLIKTKDWRQVLVFTR 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R TK L E A+ G SQ R+ AL + RV +ATD+AARGID+ Sbjct: 253 TKHGANRLTKQLEEAGISAAAIHGNKSQGARTKALASFKANEIRVLVATDIAARGIDIDQ 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL + PE+ +HR GRTGRAG+ G +V ++ Sbjct: 313 LPHVVNYELPNVPEDYVHRIGRTGRAGQSGEAVSLV 348 >gi|228952820|ref|ZP_04114890.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806863|gb|EEM53412.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 458 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 194/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + + +E Sbjct: 12 ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDSE- 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 71 -----SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ VS+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 246 LAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|224052119|ref|XP_002191015.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Taeniopygia guttata] Length = 589 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 145/425 (34%), Positives = 229/425 (53%), Gaps = 32/425 (7%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P Q + L+ RG L VQ P KDV+ A+TG+GKT +F L L Sbjct: 24 FSNFPLSQNTVKLLTARGIKYLFPVQVKTFQPIYDGKDVIAQARTGTGKTFSFALPLIEK 83 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + AP L + PTRELA QV ++ + L K V C G S ++E+ DL Sbjct: 84 LQSVTQDGRRGRAPKVLVLVPTRELATQVAKDFKNLTKKLSVA---CFYGGSPYKEQLDL 140 Query: 122 -QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179 ++G I+VGTPGR+ DHI+ L +S +K VVLDE D MLD+GF + +E IL SS K+ Sbjct: 141 LKSGIDILVGTPGRIQDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEILGSSYKRG 200 Query: 180 ----RRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHS--DIDYRAVLVALSDRD 232 + L+FSAT + +AK Y +D ++++ + Q + +++ A+ S R Sbjct: 201 SENNPQTLLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAIQCRSSQRA 260 Query: 233 NAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQM 289 + +I++ Y G++ IVFC T+ + + L Q +L G++ Q++R L+ Sbjct: 261 GVLGDIIQVYSGSRGRTIVFCETKKEANEL--AMNASLKQDAQSLHGDIPQKQREITLKG 318 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 R+G V IAT+VAARG+D+P+++LVI + ++ +HRSGRTGRAGR G+ + + Sbjct: 319 FRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICL-- 376 Query: 350 QNMQRRAERLFRE----ANVSVVWEPAPSVEAI---RERDAQRILQ--DPLFLDSIQGDE 400 QRR E L ++ A ++ PS + DA+++L+ P +D + Sbjct: 377 --FQRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSSDAKKLLEAVPPAAVDYFRKSA 434 Query: 401 KKMVD 405 ++++D Sbjct: 435 EELID 439 >gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria MC40-6] gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MC40-6] Length = 512 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 143/400 (35%), Positives = 211/400 (52%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALAST 61 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L A Sbjct: 45 PEIV-SALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 103 Query: 62 LLAENDRF--------------SPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 LA+ R P + P L + PTRELA+QV G+ L+ L Sbjct: 104 TLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 163 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDIE I+ ++P R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 218 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEI--QQRLESRTN 275 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ F+ AL G+ Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371 AGR G +V ++ Q +R ER R NV +EP Sbjct: 396 AGRSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 435 >gi|261856513|ref|YP_003263796.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2] gi|261836982|gb|ACX96749.1| DEAD/DEAH box helicase domain protein [Halothiobacillus neapolitanus c2] Length = 594 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 155/508 (30%), Positives = 256/508 (50%), Gaps = 29/508 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++ E GY + + +Q + L KDVL AQTG+GKT AF L L S + N R Sbjct: 21 SVEELGYESPSPIQAKSIPVLLEGKDVLGMAQTGTGKTGAFALPLLSRIDI-NLR----- 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AP L +APTRELA+QV ++ YA+ V GG ++ + R L+ G H+VVGT Sbjct: 75 APQLLVLAPTRELAIQVAEAMQA-YARHLPDFHVLPVYGGQAMEPQLRGLKRGVHVVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DHI+ L ++ ++AVVLDEADEML +GF DD++ IL +P R++ +FSAT+ Sbjct: 134 PGRIQDHIKRGTLKLNQIQAVVLDEADEMLRMGFIDDVDEILSKTPANRQVALFSATMPD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + ++ V + I S I+ R V+ + +A+ IL I+F Sbjct: 194 QIRRIAQRHLRNPVEIAIKSSTSTVKAINQRYWAVSGMHKLDALTRILEVEEFDAVIIFV 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + + L + L+G+++Q R A+ ++ G + IATDVAARGID+ Sbjct: 254 RTKVATTELAEKLEARGYAASPLNGDMNQAMREKAIDRLKRGSLDIIIATDVAARGIDVA 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + V++ ++ + E+ +HR GRTGRAGR G ++ + +R + R + Sbjct: 314 RVSHVVNYDIPLDTESYVHRIGRTGRAGRSGEAILFVAPREKRMLGAIERATGQLITPMR 373 Query: 372 APSVEAIRERDAQRIL---------QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 PS I ++ + QD F +++ + + DV L+ +IAA Sbjct: 374 LPSQSDIADKRSAAFKNQISEAMESQDLAFFETLIEEYQSEHDVGLS-----EIAAALAY 428 Query: 423 I-HRAGLCAPEEITPVSLVSGRDR-----FRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476 + + P EI + V DR RD R + +++ + + +G + Sbjct: 429 LAQKDRPLLPAEIKETAQVGFGDRQDRGQGRDQDRRDEPRRPRQNDDMARVKYRIEIGHE 488 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRV 504 + + ++ L +GI+ + IGAIR+ Sbjct: 489 HGVQPKNIVGALANEAGIDSKYIGAIRI 516 >gi|222098932|ref|YP_002532990.1| ATP-dependent RNA helicase [Bacillus cereus Q1] gi|229199584|ref|ZP_04326245.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293] gi|221242991|gb|ACM15701.1| ATP-dependent RNA helicase [Bacillus cereus Q1] gi|228583989|gb|EEK42146.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293] Length = 481 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 120/366 (32%), Positives = 193/366 (52%), Gaps = 8/366 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + AEN Sbjct: 18 ALTGLGYDHPTEVQGKVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWAEN------ 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTP Sbjct: 72 -KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DHI L++ LK +V+DEADEML++GF D +E I+D P R ++FSAT+ Sbjct: 131 GRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPED 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L++ Y + I + I++ ++ + + ++ + I+FC Sbjct: 191 VERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCR 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +V + L + + G + Q++R + R G+ R +ATDVAARGID+ + Sbjct: 251 TQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDN 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + Sbjct: 311 ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIG 370 Query: 373 PSVEAI 378 PS E + Sbjct: 371 PSKEEV 376 >gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185] gi|149127966|gb|EDM19188.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185] Length = 375 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 191/345 (55%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY T +QE + L ++D+L AQTG+GKT +F + + L Sbjct: 7 NITEPILKAIKEKGYTVPTPIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQHLQVV 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL + PTRELA+Q+ ++ T V V GGV+ + L+ G Sbjct: 67 SKESVKRQGIKALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRKGI 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + +++ ++ VLDEAD MLD+GF DI+ IL PK+++ L F Sbjct: 127 DILVATPGRLLDLMNQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I TL K+ K+ V++ I ++ I+ V ++ +++IL+ + Sbjct: 187 SATMPDTIVTLTKSLLKNPVKIYITPKSSTVDSINQVVYFVEKKEKSQLLISILQKAEDQ 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++F T+ + + K+L + A+ G SQ R +AL + G+ RV +ATD+A+ Sbjct: 247 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RGID+ +L +VI+ +L PE +HR GRTGRAG G ++ Q Sbjct: 307 RGIDISELPMVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQ 351 >gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228] gi|81843521|sp|Q8CRP6|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679 gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228] Length = 509 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 68 QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKRGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI L + + K A ++ I + N + SD ID +V ++ + N L H + AIV Sbjct: 188 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa] Length = 738 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKK--LSVACFYGGTSYQSQINHI 257 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 258 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 317 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 318 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 377 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 378 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 435 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 436 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 495 Query: 350 Q 350 + Sbjct: 496 R 496 >gi|255079166|ref|XP_002503163.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299] gi|226518429|gb|ACO64421.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299] Length = 450 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/398 (31%), Positives = 214/398 (53%), Gaps = 13/398 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + EA ++ G+ + +Q + L+ KDV+ AQTGSGKT AF L + LL + F Sbjct: 26 LAEAAADLGWKAPSEIQAQSIPQALQGKDVIGLAQTGSGKTGAFALPILQELLDKPQAF- 84 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL ++PTRELA+Q+ + E L A GV AV +GG+ + + L H+VVG Sbjct: 85 -----FALVLSPTRELAIQIAEQFEALGAGIGVKTAVLVGGIDMMAQSIQLGKRPHVVVG 139 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGR+ DH+ KG + L+ + LDEAD +L+L F +I+ IL P+ RR +FSAT+ Sbjct: 140 TPGRVVDHLTNTKGFTLKQLQVLCLDEADRLLNLDFEQEIDQILKVVPRDRRTQLFSATM 199 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + + L + ++ V+V ++++ + + + +D + + + +V Sbjct: 200 TSKVAKLQRACLRNPVKVEVSAKYSTVDSLKQNYLFIPAKHKDCYVNYLFNELSSSTMMV 259 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T + V F + + G++SQ +R AL + G + +ATDVA+RG+D Sbjct: 260 FTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRIGALNKFKAGERNILVATDVASRGLD 319 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVS 366 +P +++VI+ ++ N ++ +HR GRT RAGR G+++ ++ Q + ++ ERL ++ + Sbjct: 320 IPAVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAITMVTQYDVELYQKIERLIQK-KLD 378 Query: 367 VVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKK 402 P +V + ER +AQRI Q + +G KK Sbjct: 379 AYDAPEEAVLLMNERVNEAQRIAQQQMREADAKGGGKK 416 >gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp. SPB78] gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp. SPB78] Length = 485 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 127/346 (36%), Positives = 186/346 (53%), Gaps = 10/346 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G V+ +Q L L DV+ A+TG+GKT+ FGL L + D R Sbjct: 22 EALEAVGIVSPFPIQSLTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVSADVEAGR 81 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P + AP AL + PTREL QV +L+ V V GG + + L+ G Sbjct: 82 ATPDKLSEAPQALVVVPTRELCTQVTNDLQTAGKVRDVRVLAIYGGRAYEPQVEALKKGV 141 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D + L++S ++A+VLDEADEMLDLGF D+E I+ P KR+ ++F Sbjct: 142 DVVVGTPGRLLDLAGQRKLDLSKVRALVLDEADEMLDLGFLPDVEKIVAMLPVKRQTMLF 201 Query: 186 SATISPAITTLAKNYQKDAVRVNIAS---ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 SAT+ A+ LA+ Y +N S EN ++ + D+ + IL+ Sbjct: 202 SATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVFRAHSMDKPEMVARILQAE 261 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G ++FC T+ + + ++ L F A+ G+L Q R AL+ R+G+ V + TD Sbjct: 262 GRGLVMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 321 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI+ + + + LHR GRTGRAGR G +V ++ Sbjct: 322 VAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAVTLV 367 >gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC 43768] gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC 43768] Length = 457 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333] gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM 12333] Length = 589 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 123/351 (35%), Positives = 201/351 (57%), Gaps = 8/351 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +PQ + +A++ G+ T +Q A + L +D++ AQTG+GKT AFGL L L A Sbjct: 26 GLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPL---LAAV 82 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + + + A AL + PTRELA+QV + ++ + GV V GG S + R L+ G Sbjct: 83 DPQLA---AVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLERG 139 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D + L++ L+ +VLDEADEML +GF +D++ IL +P +++ + Sbjct: 140 AQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVAL 199 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ P I +A+ + ++ + +A + + + +V ++ A+ +L A Sbjct: 200 FSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVLATSDA 259 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AIVF TR + LA ++SG+++Q+ER ++ +R G V +ATDVA Sbjct: 260 DAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDVA 319 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ARG+D+ + LV++ ++ E +HR GRTGRAGR G ++ F+ P+ R Sbjct: 320 ARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPR 370 >gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797] gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797] Length = 418 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 125/360 (34%), Positives = 193/360 (53%), Gaps = 15/360 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LS+ GY + +Q ++ + +D + A+TG+GKT AF L + L D P Sbjct: 30 LSKAGYETPSPIQSELIPIAVTGQDCIGQARTGTGKTAAFSLPVLQQL----DLRRPGMQ 85 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL +APTREL+ QV E+ L + +AV +GG V + L+ GA I VGTPGR Sbjct: 86 --ALILAPTRELSEQVAAEIRKLCTSKSLSIAVLVGGKPVRPQENQLKKGAQIAVGTPGR 143 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + DHI L + L VVLDEAD MLD+GFR DIE IL P+KR+ L+ SAT+ P + Sbjct: 144 VIDHINRGNLQLGTLGFVVLDEADRMLDIGFRPDIEKILRKCPEKRQTLLLSATLPPPVE 203 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 LA Y ++ V ++++ + ID + V + + +L K IVF T+ Sbjct: 204 RLANRYMQNPVMIDLSEDKVSVDAIDQYYITVDPDRKIKLLSRLLFQERPKQTIVFTRTK 263 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 + ++ ++ L +V A+ G+L Q +R L+ R+G+ R+ IATDV RGID+ + Sbjct: 264 RGADKLDRIFSKKLKEVAAIHGDLPQPKRDRVLKKFREGKIRLLIATDVMGRGIDVSGIS 323 Query: 315 LVIHAELSSNPENLLHRSGRTGR--AGRKGMS-VFVIPQ------NMQRRAERLFREANV 365 +I+ ++ ++ +HR GR GR + +KG + FV P N++ R + +E V Sbjct: 324 HIINFDIPEFSDDYVHRIGRVGRLSSDQKGAAFTFVAPDEGEQLTNIENRINHMVKEFRV 383 >gi|71906517|ref|YP_284104.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] gi|71846138|gb|AAZ45634.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Dechloromonas aromatica RCB] Length = 425 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 124/367 (33%), Positives = 200/367 (54%), Gaps = 8/367 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFS-P 71 A++++GY T +Q+ + + +D++ +AQTG+GKT F L + L + NDR + Sbjct: 15 AVADQGYDTPTPIQQQAIPAVMTGRDLMATAQTGTGKTAGFTLPILHRLCSGPNDRLTRV 74 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A P L + PTRELA+QV + + GGV ++ + +L+ G I+V T Sbjct: 75 AKTPRVLVLTPTRELAIQVEESVRTYGKHLPITSLAVFGGVGINPQIANLRRGVDILVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ + +++S ++ VLDEAD MLD+GF DI I+ PK+R+ LMFSAT SP Sbjct: 135 PGRLLDHVQQRTVDLSKIEIFVLDEADRMLDMGFIRDIRKIIALLPKQRQNLMFSATFSP 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + V++A+ N + R + + + ++ G +VF Sbjct: 195 DIRELAAGLLHNPASVDVAARNTAAETVTQRVIETNRDQKKELLCHLFETRGWHQVLVFA 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +K L + + A+ G+ SQ R+ AL ++G+ +ATD+AARGID+ Sbjct: 255 RTKHGADALSKTLEKAGIKSAAIHGDKSQGARTRALTEFKEGKLVALVATDIAARGIDID 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVV 368 L VI+ EL + E+ +HR GRTGRAG +G ++ ++ + + R ERL + VV Sbjct: 315 ALPYVINYELPNVAEDYVHRIGRTGRAGMEGEAISLVSHDERGSLRDIERLIKRDLERVV 374 Query: 369 ---WEPA 372 +EP+ Sbjct: 375 IPGFEPS 381 >gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180 str. F0310] gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180 str. F0310] Length = 598 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 125/349 (35%), Positives = 189/349 (54%), Gaps = 15/349 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---- 66 I +AL ++G + +Q L P L D++ A+TG+GKT+ FG+ + ++A + Sbjct: 81 IVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGY 140 Query: 67 -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D +P + P AL I PTREL QV ++L + GGV+ + L GA Sbjct: 141 EDLLNP-NKPQALIILPTRELTKQVAQDLRDAAKYLSTRIVEIYGGVAFEPQIEALTRGA 199 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGRL D +R L++S ++ VVLDEADEMLDLGF D+E +L P+ R ++F Sbjct: 200 DIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGRVPENRHTMLF 259 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239 SAT+ + LA+ + + + Q+ ++ YR V ++ + IL Sbjct: 260 SATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYR---VHAMNKVEVVARIL 316 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G ++FC T+ + +R + L F V AL G+L Q R AL+ R G+ V + Sbjct: 317 QAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGALHGDLGQGAREQALRAFRKGKVDVLV 376 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ATDVAARGID+ D+ VI+ + + + +HR GRTGRAG G +V + Sbjct: 377 ATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFV 425 >gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus] Length = 923 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 198/347 (57%), Gaps = 9/347 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDR--- 68 AL RG T VQ + L +D++ ++TG+GKT+AFGL + L AE+ + Sbjct: 270 ALKARGIEKFTPVQAITYDHILSGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHQQRT 329 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + +P L + PTRELA QV ELE L + G+ V GG + + R L +G I+ Sbjct: 330 YQRGRSPRFLVVCPTRELARQVYGELETLGSTFGLKADVFHGGAAYGPQMRSLSDGLDIL 389 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSA 187 V TPGR+ DH++ L++S ++ VLDEADEML++GF DDIE I K+ ++L+FSA Sbjct: 390 VATPGRIMDHLQRGALDLSDVRHAVLDEADEMLNMGFADDIETIFSYVDVKECQVLLFSA 449 Query: 188 TISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHG-A 244 T+ + +A Y + + V+ + N+ + + + ++ V+ R + + +I+ Y+G Sbjct: 450 TVPSWVRNIANKYTANPLTVDAVGKHVNKLATTVKHLSIEVSSRHRSSMLEDIITYYGKG 509 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +AIVF +++A L G++SQ +R ++ R +V +ATDVA Sbjct: 510 SHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVA 569 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ARGID+ D++LV+ +P++ +HRSGRTGRAGR G++V + +N Sbjct: 570 ARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAEN 616 >gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 458 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676] gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24] gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24] gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676] Length = 458 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium cryptum JF-5] gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5] Length = 525 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 191/335 (57%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+SE+ Y T +Q + L D++ AQTG+GKT AF L + + A R +P + Sbjct: 71 AISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILHRIAANRARPAPRA 130 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA Q+ T VAV IGG + R +++G ++V TPG Sbjct: 131 C-RALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRMESGVDLLVATPG 189 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + + ++ VVLDEAD+MLDLGF I I+ P++R+ +MFSAT+ I Sbjct: 190 RLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQAVMFSATMPKPI 249 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + +D V ++ E++ ID + +L+A ++ + + +L + AIVF T Sbjct: 250 RALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLLADVAVERAIVFTRT 309 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + T+ L + A+ G SQ +R AL R GR RV +ATD+AARGID+ ++ Sbjct: 310 KHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVLVATDIAARGIDVDNV 369 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRT RAG +G+++ ++ Sbjct: 370 SHVVNFELPNVPESYVHRIGRTARAGAEGVAISLV 404 >gi|319791034|ref|YP_004152674.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS] gi|315593497|gb|ADU34563.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS] Length = 421 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 129/342 (37%), Positives = 198/342 (57%), Gaps = 18/342 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A +E G+ T++Q A + P L+ +DV SAQTGSGKT AF L L L AE PA Sbjct: 14 QAAAESGFAAPTAIQAAAIPPILQGRDVRGSAQTGSGKTAAFSLPLLQRLAAE-----PA 68 Query: 73 SAPL---ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 +P AL + PTRELA QVG + L + + +A+ GGVS++ + L+ GA I Sbjct: 69 QSPRRVRALVLVPTRELAAQVGETMRSLAQHLPERLKIAIAFGGVSINPQMMSLRGGADI 128 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGRL D + L + + +VLDEAD + DLGF +++ IL P +R+ L+FSA Sbjct: 129 VVATPGRLLDLVEHNALKLGAVSMLVLDEADRLFDLGFAEELGRILALLPAQRQNLLFSA 188 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T PAI +LA +D +++ E +I R + V + R + ++L+ + + Sbjct: 189 TFPPAIQSLADGMLRDPAVIDMQGEPGTEPNIVQRVIEVDANRRTQLLRHLLKENEWERV 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQ----VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +VF +T+ S +++AE L++ V G+++Q R+ L ++ R V IATD+ Sbjct: 249 LVFVATQHS----AQIVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWDVVIATDL 304 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+ L +VI+ +L +P + +HR GRTGRAG G+++ Sbjct: 305 AARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAI 346 >gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62] gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62] Length = 499 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 120/356 (33%), Positives = 191/356 (53%), Gaps = 13/356 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + A+ + GY T +Q + P L +DVL AQTG+GKT +F L + S L Sbjct: 8 NLDRKVLSAVEDAGYTEPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMISMLKRG 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R A P +L +APTRELA QV + T + A+ IGGVS + + + G Sbjct: 68 RAR---ARMPRSLVLAPTRELAAQVAENFDVYAKNTKLTKALLIGGVSFKEQDQLIDRGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L F Sbjct: 125 DVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-------IVNI 238 SAT++P I + + + +V +A I V+ S +D + + Sbjct: 185 SATMAPEIERITNTFLSNPAKVEVARAATTSDTITQSVVMFKGSRKDRESSEKRQLLRTM 244 Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 + G K N I+FC+ + V K + ++ + G+L Q +R L RDG R Sbjct: 245 IENEGDKCRNGIIFCNRKVDVDIVAKSMKKYGLDASPIHGDLDQSKRMETLAAFRDGTLR 304 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351 +A+DVAARG+D+P++ V + ++ S+ E+ +HR GRTGRAG+ G ++ + +P++ Sbjct: 305 FLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKLGTAMMICVPRD 360 >gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus] Length = 624 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 16/348 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q P KD++ A+TG+GKT +F + L L + + + Sbjct: 84 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 143 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV ++ + + K + VA GG S + ++NG I+VGTPGR Sbjct: 144 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGR 201 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189 + DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K + L+FSAT Sbjct: 202 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 261 Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y K +V++ + Q + +++ A+ S R I ++L+ Y G++ Sbjct: 262 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 321 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+FC T+ +V+ + H+ Q L G+++Q +R L+ R+G +V +AT+V Sbjct: 322 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 379 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ V F P+ Sbjct: 380 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 427 >gi|121635074|ref|YP_975319.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18] gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18] gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M6190] gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M13399] gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis ES14902] gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M01-240013] gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis M04-240196] Length = 462 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ N + ++ + Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 364 NVSVVWEPAPSVEAIRER 381 N + +E R+R Sbjct: 366 NRKLPELTIEGMEPTRKR 383 >gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144] gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144] Length = 528 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L D+L AQTG+GKT AFG+ L ++ + Sbjct: 34 QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 86 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 87 QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTP 146 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P ++R+ ++FSAT+ Sbjct: 147 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 206 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI L + + K A ++ I + N + SD ID +V ++ + N L H + AIV Sbjct: 207 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 264 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D Sbjct: 265 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 324 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 325 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 368 >gi|229178806|ref|ZP_04306167.1| ATP-dependent RNA helicase [Bacillus cereus 172560W] gi|228604682|gb|EEK62142.1| ATP-dependent RNA helicase [Bacillus cereus 172560W] Length = 458 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ I+ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus] Length = 689 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 16/348 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q P KD++ A+TG+GKT +F + L L + + + Sbjct: 149 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV ++ + + K + VA GG S + ++NG I+VGTPGR Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGR 266 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189 + DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K + L+FSAT Sbjct: 267 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 326 Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y K +V++ + Q + +++ A+ S R I ++L+ Y G++ Sbjct: 327 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 386 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+FC T+ +V+ + H+ Q L G+++Q +R L+ R+G +V +AT+V Sbjct: 387 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 444 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ V F P+ Sbjct: 445 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492 >gi|52143016|ref|YP_083814.1| ATP-dependent RNA helicase [Bacillus cereus E33L] gi|51976485|gb|AAU18035.1| ATP-dependent RNA helicase [Bacillus cereus E33L] Length = 450 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE + I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2] gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1] gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2] gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1] gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1] gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1] gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3] gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1] gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1] gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1] gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1] gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1] gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2] gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1] gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2] gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1] gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1] Length = 564 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 64 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 183 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH++ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407 >gi|228908214|ref|ZP_04072060.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200] gi|228851412|gb|EEM96220.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200] Length = 454 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ +P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKINPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|229069971|ref|ZP_04203249.1| ATP-dependent RNA helicase [Bacillus cereus F65185] gi|228713171|gb|EEL65068.1| ATP-dependent RNA helicase [Bacillus cereus F65185] Length = 458 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 194/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + + +E Sbjct: 12 ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDSE- 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 71 -----SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ VS+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 246 LAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|254496850|ref|ZP_05109700.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12] gi|254353922|gb|EET12607.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12] Length = 475 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 201/366 (54%), Gaps = 15/366 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q L L+ DV+ A+TGSGKT AFGL L + L E A Sbjct: 33 LASLGYEKMTPIQVQSLPTLLKRIDVIAQAKTGSGKTAAFGLTLLNHLKVE------FFA 86 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV + + L V V GG+ + L++GAHIVVGTPG Sbjct: 87 TQALVLCPTRELAEQVSQAIRRLARLLPNVKVLNLSGGMPFTPQLDSLRHGAHIVVGTPG 146 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ H+ L++ HL +VLDEAD MLD+GF D+I+ I+ + P R+ L+FSAT I Sbjct: 147 RIQKHLDKNSLSLKHLNTLVLDEADRMLDMGFFDEIKNIIRTCPTTRQTLLFSATYPAEI 206 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCS 252 LA + +D ++ I EN +I+ V + A++N +LR+H + ++FC+ Sbjct: 207 KNLADEFMRDPQKITI-EENHDELNIEQHFYEVNNAKDKFALLNDLLRHHKPTSTLIFCN 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ ++ ++ L + F L+G++ Q +R A+ + + +ATDVAARG+D+ + Sbjct: 266 TKEQTNQVSRQLTQAGFSATMLNGDMEQIDRDLAMIRFGNKSCSILVATDVAARGLDIKE 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF---REANVSVVW 369 L V++ EL+ + +HR GRTGRAG KG+ VF I AERL E + W Sbjct: 326 LPAVVNYELAFDLAVHIHRIGRTGRAGHKGL-VFNI--TTPADAERLCLIEEELGRPITW 382 Query: 370 EPAPSV 375 E + + Sbjct: 383 ETSTQL 388 >gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430] gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430] Length = 515 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 123/386 (31%), Positives = 202/386 (52%), Gaps = 8/386 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 + E G+ + +Q+ + L D++ AQTG+GKT AFGL L + L +ND Sbjct: 28 GIKEAGFSEPSPIQKEAIPLILDGLDIIAQAQTGTGKTAAFGLPLINNL--KND-----G 80 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + L + PTRELA+QV E+ L V GG + R+ L+ +++ TPG Sbjct: 81 SIEVLIVTPTRELAMQVSDEIFKLGKYNRVKTVSLFGGQPIRRQIELLEKKPQVIIATPG 140 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+R + L + VVLDE+DEMLD+GF DDIE I R+ L+FSAT+ I Sbjct: 141 RLLDHLRNERLKNFYPSVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTLLFSATMPTPI 200 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + I ++ + DI R ++ +R++AIV ++ + AI+F Sbjct: 201 KHLAQKILSNPKLIKITQDDTTNQDISQRYYIINEQEREDAIVRLIDSEMPQKAIIFTRM 260 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + ++ L F+ AL G++ Q+ER +++ +D + +ATD+AARG+D+ + Sbjct: 261 KKEADILSERLLSRGFKAGALHGDMEQRERVKSIKAFKDSTIDILVATDIAARGLDISGV 320 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 V + + NPE+ +HR GRTGRAG+KG+++ + + R+ S+ P Sbjct: 321 SHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIKENTKASIELYEIP 380 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGD 399 S++ ++ IL D + +I D Sbjct: 381 SIQDTMDKKDSNIL-DKILKHAISDD 405 >gi|164655646|ref|XP_001728952.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966] gi|159102840|gb|EDP41738.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966] Length = 396 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 192/337 (56%), Gaps = 18/337 (5%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAPLALAI 80 +++Q+ + P LR +DV+ AQ+G+GKT F +A+ T+ L E AL + Sbjct: 47 SAIQQRAILPILRGRDVIAQAQSGTGKTATFSIAMLQTIDISLRETQ---------ALVL 97 Query: 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 +PTRELA Q+ + L V CIGG SV + R L+ G HIV GTPGR+ D IR Sbjct: 98 SPTRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLEYGQHIVSGTPGRVFDMIR 157 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 + L ++K +++DE+DE+L++GF+D I I P ++++ SAT+ + + + Sbjct: 158 RRHLRTKNIKMLIMDESDELLNMGFKDQIYDIYRYLPPATQVVLVSATLPHDVLEMTSKF 217 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASV 257 D VR+ + + I + VA+ D + + ++ A++FC+TR V Sbjct: 218 MTDPVRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 275 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E+ FQV ++ GE+ Q+ER + R G +RV I TDV ARGID+ ++ LVI Sbjct: 276 DWLTDRMRENNFQVSSMHGEMQQKERDAIMGEFRQGGSRVLITTDVWARGIDVQNVSLVI 335 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L +N EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 336 NYDLPTNRENYIHRIGRSGRFGRKGVAINFVTTEDVK 372 >gi|119945503|ref|YP_943183.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] gi|119864107|gb|ABM03584.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 433 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 136/418 (32%), Positives = 220/418 (52%), Gaps = 23/418 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +A+ GY NLT +Q+ + P +R D+L SAQTG+GKT AF L + +LA+N P Sbjct: 14 KAVKACGYKNLTPIQQQAI-PIIRSGSDLLASAQTGTGKTAAFTLPILD-ILAKNANEKP 71 Query: 72 ASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + AL + PTRELA QV ++ + V GG S+ + + L+ G ++V Sbjct: 72 TTNTTIKALILTPTRELAAQVAANVKEYSQFLPLTSGVVSGGRSMDSQTKMLKVGVDVLV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL +H+ + +++SH+K + LDEAD MLDLGF DI+ ++++ +K + LMFSAT Sbjct: 132 ATPGRLLEHLTLRNVDLSHVKYLTLDEADRMLDLGFLTDIQKLMEAIKQKHQTLMFSATF 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S + TLAK + I+ +N + + V+ + ++ + ++ K +V Sbjct: 192 SNKVKTLAKQILTTPKTLEISPQNSTAGKVKQQVYWVSETRKNELLSELIGVKNWKQVLV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ S + K L + G+ +Q R+ A+Q +G RV +ATDVAARG+D Sbjct: 252 FAGTKESANLLAKELQLDGIKTAVCHGDKTQGARNQAIQKFTEGSVRVLVATDVAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ----------RRAER 358 +PDL V++ L E+ +HR GRT RAG+ G +V V P++ Q R+ ER Sbjct: 312 IPDLPYVVNFHLPFLAEDYIHRIGRTARAGKSGTAVSLVSPKDEQFLDNIETLIGRKFER 371 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416 + +E S+ E+ + + L+ + + KM+++ AK+ P I Sbjct: 372 IVYPG-----YEIDSSLPGYYEQSSDKPLKKSRY--KATQERNKMLEIQRAKNTPAAI 422 >gi|268680470|ref|YP_003304901.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618501|gb|ACZ12866.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 417 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 201/378 (53%), Gaps = 7/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ E GY + T VQE + L +D+L AQTG+GKT F LL + Sbjct: 7 NLNASILKAVQEEGYTHPTPVQEKAIPFILEGRDMLAGAQTGTGKTAGF-TLPLLELLLK 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R + L + PTRELA QVG + AV GGV +H + + L+NG Sbjct: 66 KPRNKAKPSLRVLILTPTRELAAQVGESVRTYGKYLPFKSAVIFGGVGIHPQIQTLKNGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+ +N+ + VLDEAD MLD+GF DI ++ P KR+ L+F Sbjct: 126 DILVATPGRLLDHVSQGTINLKEIDTFVLDEADRMLDMGFIKDIRKVIALLPSKRQNLLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I TL + K+ V +A N ++ R ++V + + ++ H K Sbjct: 186 SATYSDEIKTLCASILKNPAVVEVARRNTSSELVNQRVIIVDCKRKTALLGKLISEHKWK 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ ++ ++ L++ A+ G SQ R+ AL + G +V +ATD+AA Sbjct: 246 QVLVFTRTKHHANKVSEYLSKIGISASAIHGNKSQSARTKALADFKSGSIKVLVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR- 361 RG+D+ L VI+ EL + E+ +HR GRTGRAG +G ++ ++ + + E+L + Sbjct: 306 RGLDIDQLPHVINLELPNIAEDYVHRIGRTGRAGNEGEAISLVCVDEFDYLKGIEKLIKK 365 Query: 362 --EANVSVVWEPAPSVEA 377 E V +EP P+++A Sbjct: 366 TLEREVVEGFEPDPTIKA 383 >gi|229190613|ref|ZP_04317610.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876] gi|228592958|gb|EEK50780.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876] Length = 458 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ I+ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|237806841|ref|YP_002891281.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis DSM 9187] gi|237499102|gb|ACQ91695.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 469 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 122/361 (33%), Positives = 198/361 (54%), Gaps = 13/361 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L+ GY +T +Q L L+ KDVL A+TGSGKT AF L L L ++ Sbjct: 26 ENLTALGYSEMTPIQAQSLPAVLQGKDVLAQAKTGSGKTAAFALGLLQGLDVKSLNVQ-- 83 Query: 73 SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L + PTRELA QV E+ L V V GG+ + + L+ GAHIVVGT Sbjct: 84 ----GLVLCPTRELADQVAGEIRRLARLIPNVKVLTLCGGMPIGPQFSSLEQGAHIVVGT 139 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ H+ + L+++ LK VLDEAD MLD+GF D + I P++R+ L+FSAT Sbjct: 140 PGRVQKHLDKESLSLAALKTWVLDEADRMLDMGFADAMREIAKVCPRQRQTLLFSATYPE 199 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAI 248 I L+ +Q++ + V + S HS + L +++ A++ +L+++ ++ + Sbjct: 200 DIQRLSTEFQRNPLSVRVEST---HSAVQIEQRFFELPNQEAKFPALLKLLQHYQPRSTV 256 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ + + L+ + +AL+G+L Q+ER + + + +ATDVAARG+ Sbjct: 257 IFCNMKHQTQQVADALSAQGYSALALNGDLEQRERDQVVVRFSNQSCAILVATDVAARGL 316 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ +L+ V++ +L+ +PE +HR GRTGRAG+ G+++ + + R ++ V Sbjct: 317 DIKELQAVVNYDLTPDPEIHVHRIGRTGRAGQTGLALTLTTASQTNRVLQIEDYQQSQAV 376 Query: 369 W 369 W Sbjct: 377 W 377 >gi|221108213|ref|XP_002168355.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 480 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 197/337 (58%), Gaps = 10/337 (2%) Query: 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76 E G T +Q + + L +D + SA+TGSGKT AF L + L D + Sbjct: 20 EMGISKPTEIQVSCIPEILSGRDCIGSAKTGSGKTAAFALPIIQKL--SEDPY----GIF 73 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 AL + PTRELA+Q+ + + L G+ AV IGG+ + ++ +L N H+V+ TPGRL Sbjct: 74 ALILTPTRELAIQIADQFKALGKSIGLNDAVIIGGLDMVKQGMELSNQPHVVIATPGRLA 133 Query: 137 DHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 HI G +++ +K +VLDEAD +L+ F +D+E I D+ KKR+ L+FSATI+ AI Sbjct: 134 SHITSGTKFSLNKIKFLVLDEADRLLEKSFENDLEVIFDNIAKKRQTLLFSATITDAINH 193 Query: 196 LAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L K + + SE+ +++D R +L+ +D +V++L+ K+ I+F T Sbjct: 194 L-KEVAHNPFCYEVKSEDDFATVTELDQRYLLIPSQVKDCYLVHLLQNFSEKSVIIFTQT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 S + +L + F+ L +SQ+ER ++L R G ++ +ATDVA+RG+D+P + Sbjct: 253 CRSCQVISFMLRKVEFKCAGLHSVMSQRERLSSLGRFRSGHVKILVATDVASRGLDIPLV 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +LVI+ + ++P++ +HR GRT RAGR GMS+ ++ Q Sbjct: 313 QLVINYNVPASPKDYVHRVGRTARAGRGGMSLTLLTQ 349 >gi|149370359|ref|ZP_01890048.1| inducible ATP-independent RNA helicase [unidentified eubacterium SCB49] gi|149355910|gb|EDM44467.1| inducible ATP-independent RNA helicase [unidentified eubacterium SCB49] Length = 445 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 127/364 (34%), Positives = 198/364 (54%), Gaps = 10/364 (2%) Query: 24 TSVQEAILNPDLREKDVLVS-AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 T +Q I+ L +KD +V A+TG+GKT AFGL L + N+ A+ +AP Sbjct: 27 TDIQTKIIPVVLNQKDDVVGIAKTGTGKTAAFGLPLLQQIDVNNNDIQ------AIVLAP 80 Query: 83 TRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 TREL Q+ + L ++ K + +A GGV + + L++ HIVV TPGRL D + Sbjct: 81 TRELGQQIYKNLSDFAKFKPEISIASTCGGVPIKPQIERLKDPTHIVVATPGRLIDLLER 140 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY- 200 K + IS+ +V+DEADEM+ + ++ ++ I+ PKKRR +F+AT+S I L +NY Sbjct: 141 KAVAISNASYLVIDEADEMVTI-LKEGLDKIVKGLPKKRRTFLFTATLSGEIKQLVQNYL 199 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 K + + H ID++ V+V ++ + +++ L + I+FC T+A+V++ Sbjct: 200 SKKVSHIEVDMATLGHQGIDHQYVVVNPEEKLDVLMHFLSSKEGQRGIIFCKTKAAVNKL 259 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 K LA H F A+ G LSQ R + R G + IATD+AARGID+ ++ V+ Sbjct: 260 AKKLAIHKFSSGAIHGSLSQPIRDRIMDQFRAGHINILIATDLAARGIDVKEISYVVQYH 319 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380 L + +HRSGRT RAG KG+S+ VI Q + L E ++ P +I E Sbjct: 320 LPDTFDAYVHRSGRTARAGAKGLSLSVIQQEEVQDMPELEDELGITFSEMPKADALSIEE 379 Query: 381 RDAQ 384 +A+ Sbjct: 380 NNAK 383 >gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens] Length = 455 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 192/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|126175665|ref|YP_001051814.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS155] gi|152999404|ref|YP_001365085.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS185] gi|160874024|ref|YP_001553340.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS195] gi|125998870|gb|ABN62945.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] gi|151364022|gb|ABS07022.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|160859546|gb|ABX48080.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] Length = 458 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E LS GY +T +Q L P L +DV+ +TGSGKT AFGL L + L + Sbjct: 10 PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R L + PTRELA QV +E+ L V V GGV + + L++GAH Sbjct: 69 RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I++ +P++R+ L+FS Sbjct: 123 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243 AT I ++AK D V + H + L D R A+ +L H Sbjct: 183 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 239 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++A+VFC+T+ + L F V+AL G+L Q++R L + A V +ATDV Sbjct: 240 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 299 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 AARG+D+ L+ V + ++ + E +HR GRTGRAG KG Sbjct: 300 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338 >gi|254513899|ref|ZP_05125960.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium NOR5-3] gi|219676142|gb|EED32507.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium NOR5-3] Length = 435 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 124/334 (37%), Positives = 180/334 (53%), Gaps = 2/334 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+++RGY T +Q + L +DVL +AQTG+GKT AF L + L + Sbjct: 12 LAKAVNDRGYTEPTPIQIKSIPLVLDGQDVLAAAQTGTGKTAAFVLPILQRLAFVG--LA 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A L + PTRELA QV +E + AV GGV + L G +V Sbjct: 70 KAGQVRTLVLTPTRELAAQVHASVEAYGQYLDLRSAVVFGGVKAEPQIAALARGVDTLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ S L+ +VLDEAD MLD+GF DI I+D P+ R+ LMFSAT S Sbjct: 130 TPGRLLDLAQQGAVDFSALEVLVLDEADRMLDMGFIHDIRRIVDQLPENRQTLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA Y D V V +A+ N + A V + + ++++L+YH ++F Sbjct: 190 NEIRALAAQYLIDPVSVEVAAANSTTELVQQMAYPVDRDRKTDLLIHLLKYHQWSQVLIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ +R TK L F+ + G SQ R AL + G+ ++ +ATD+AARG+D+ Sbjct: 250 CRTKHGANRLTKKLLAAGFKAAPIHGNKSQNARQRALDEFKTGKLQLLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 L V++ +L P++ +HR GRTGRAG G S Sbjct: 310 NQLPEVVNFDLPCVPQDYVHRIGRTGRAGATGRS 343 >gi|218897409|ref|YP_002445820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9842] gi|228901054|ref|ZP_04065263.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222] gi|228965436|ref|ZP_04126523.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto str. T04001] gi|218541264|gb|ACK93658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9842] gi|228794267|gb|EEM41784.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto str. T04001] gi|228858570|gb|EEN03021.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222] Length = 450 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ +P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKINPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|206971476|ref|ZP_03232426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] gi|206733461|gb|EDZ50633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH1134] Length = 458 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ I+ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] Length = 463 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 135/430 (31%), Positives = 229/430 (53%), Gaps = 23/430 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77 G+ T +Q + ++ KD++ AQTG+GKT AFG+ L + L E + Sbjct: 2 GFEEPTPIQAQAIPIGMKGKDMIGQAQTGTGKTTAFGVPLLEQIDLNEGIQ--------G 53 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L +APTRELAVQV EL + GV GG + R+ R L+ HI+ TPGRL D Sbjct: 54 LVLAPTRELAVQVAEELNRIGQVKGVRTLPVYGGQDITRQIRALKKHPHIIAATPGRLID 113 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI K + +S++K VVLDEADEML++GF +DIE IL +R+ L+FSAT+ I +LA Sbjct: 114 HIERKTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQTLLFSATMPKRIQSLA 173 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + + ++ V + ++ +I+ + V + + + N+L + AIVF T+ V Sbjct: 174 EKFMQEPEMVKVKAKEMTVKNIEQYYMEVHEKQKFDVLCNLLDIQSPELAIVFGRTKKRV 233 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + L + + + G++ Q +R ++ ++ + +ATDVAARG+D+ + V Sbjct: 234 DEVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMVATDVAARGLDISGVSHVY 293 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS-VVWEPAPSV 375 + ++ +PE+ +HR GRTGRAG KG+++ FV P+ + ++ S + +P PS Sbjct: 294 NFDIPQDPESYVHRIGRTGRAGNKGLAITFVSPREIDHL--KIIESVTKSKMAKKPVPSF 351 Query: 376 EAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431 + + + Q + ++ I+ +E K++ + LL D + A +++ L Sbjct: 352 KDVVAGNQQATINK--LMEVIEKEEHADFKRVAESLLEDTDSVTLLAAAIKL----LTKG 405 Query: 432 EEITPVSLVS 441 ++TPV L + Sbjct: 406 PDVTPVKLTA 415 >gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 408 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 134/397 (33%), Positives = 214/397 (53%), Gaps = 14/397 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + +AL + T +Q + L+ KD+L SAQTG+GKT+AF + L + LL E Sbjct: 9 LPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLLNEP 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125 + S AL I PTRELA QV E+ L ++ + VA+ IGG + R+ LQ Sbjct: 69 NTGS------ALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKP 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+GTPGR+ DHI K L ++ +VLDE D M D+GF IE I+ PK R+ LMF Sbjct: 123 QIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA+ Y R+++ E I V + S++ +V L Sbjct: 183 SATLPGDIVKLAEKYLNRPERISVDCEATTSVKIKQEIVYASESEKYEKLVTQL-CQREG 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + I+F T+ + L + + +A+ G+L Q +R + R GR ++ +ATDVA+ Sbjct: 242 SIIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVAS 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+P ++ VI+ + + + +HR GRT RAG +G ++ FV PQ+ +R +E Sbjct: 302 RGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPALADKEGE 361 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 ++ SV+ ++R+++++ + P L + G +K Sbjct: 362 LNFDC----SVQ-FKKRNSKKVFKRPSTLKTKYGRKK 393 >gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum DSM 4028] Length = 545 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 185/337 (54%), Gaps = 5/337 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71 +A+ +GY T++Q + L +D+L AQTG+GKT AFGL + L L + Sbjct: 14 KAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQILGLTRGN---- 69 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL + PTRELA+QVG ++ K + V GGV + + L+ G I+V T Sbjct: 70 GHHPRALILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIARLERGIDILVAT 129 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + L+++ ++ +V DEAD MLDLGF +I ILD P RR ++FSAT +P Sbjct: 130 PGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRTMLFSATYTP 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + I + + + V ++ +++++ +VF Sbjct: 190 QIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLIEKQKQDRILVFA 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR +R T LA H V AL G SQ R L+ +DG+ + +ATDVAARG+D+ Sbjct: 250 RTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVATDVAARGLDIS 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +L LV++ ++ ++PE+ +HR GRTGRAG G++V ++ Sbjct: 310 NLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLV 346 >gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri] gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri] Length = 693 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 197/360 (54%), Gaps = 13/360 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62 F+ + + L ++GY L +Q L L +DV+ A+TG GKT+AF L + + Sbjct: 85 FKGLTDPVKTTLRKKGYDALFQIQAETLEIALGGRDVVGRARTGCGKTLAFVLPIIELMA 144 Query: 63 ----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + N R P+ + +APTRELA QV + +W+ G GG + Sbjct: 145 KMSPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSYGFKSLCVYGGAPYREQE 204 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L++G IV+GTPGR+ DH+ K L ++ LK VLDEADEML++GF DD+E IL SS Sbjct: 205 MGLRSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDEADEMLNMGFVDDVETILKSS-G 263 Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSD--IDYRAVLVALSDRDNAI 235 + L+FSAT+ + ++K + K + V++ + +Q + + + + SDR + + Sbjct: 264 DVQTLLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKASGAVQHMLLPCQWSDRVDLV 323 Query: 236 VNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRD 292 +++R G IVFC T+ L + + + AL G++SQ +R L + R+ Sbjct: 324 CDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQSQREVVLSLFRE 383 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 + +V +ATDVAARG+D+ +ELVI E + E +HRSGRTGRAG G+SV P+N Sbjct: 384 DKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCTPRN 443 >gi|121998794|ref|YP_001003581.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira halophila SL1] gi|121590199|gb|ABM62779.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila SL1] Length = 430 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 121/349 (34%), Positives = 191/349 (54%), Gaps = 11/349 (3%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P + + L + G + T +Q A L L ++ AQTG+GKT AF +A Sbjct: 11 FTDLPIHDAVLDGLDDAGLSHCTPIQAATLPRTLAGGNIAGEAQTGTGKTAAFVVATLHH 70 Query: 62 LLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 L++ E D A P A+ +APTRELA+Q+ + E + A TG+ A GG +R Sbjct: 71 LMSHPVEED----AVGPWAIMLAPTRELALQIYNDAEQIGAYTGLKFAAVYGGTGYESQR 126 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + LQ G +++GTPGR+ D + K N+ +++ VVLDEAD M DLGF DI F+L P Sbjct: 127 KQLQEGVDVIIGTPGRIIDFHKQKVFNLRNIEVVVLDEADRMFDLGFISDIRFLLRRMPP 186 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 +R L+FSAT+S + LA + D RV + SE R + +A D+ + +V Sbjct: 187 ADQRLNLLFSATLSYRVMELAWEHMGDPPRVAVESEQRTADHVRQTLYHIAKEDKTSFVV 246 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +L++ + ++F +T+ + R L + + +SG++ Q +R L+ R G Sbjct: 247 GLLQHIDPRRTLIFANTKRAAERLVGYLKGNGIEAAVISGDIPQNKREQLLEQFRTGELP 306 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V + TDVAARG+ + + VI+ +L +PE+ +HR GRT RAG G ++ Sbjct: 307 VLVGTDVAARGLHIDAVSHVINFDLPHDPEDYVHRIGRTARAGESGDAI 355 >gi|168216267|ref|ZP_02641892.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239] gi|182381904|gb|EDT79383.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239] Length = 478 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 124/360 (34%), Positives = 200/360 (55%), Gaps = 7/360 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + I +AL+ GY N + VQEA + L+ +D++V +QTGSGKT +FG+ + Sbjct: 1 MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + E + L + PTRELA+QV EL + V A G + + R Sbjct: 61 EKINIEEKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIR 114 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +L+ HIVVGTPGR+ DH+ L++S + VV+DEAD+ML +GF D I+ IL Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 + +FSAT S I + + Y ++ + + + S+ I+ A+ + ++ A+ L Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCL 234 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + ++AIVFC+TR V K+L + L G++ Q++R ++ RD +V + Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 TD+AARGI + +ELVI+ E+ E+ +HR GRTGRAGR+G ++ + ++ E + Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354 >gi|149376365|ref|ZP_01894128.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893] gi|149359379|gb|EDM47840.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893] Length = 428 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 198/347 (57%), Gaps = 9/347 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----ALAST 61 N+ Q + +A+++ G+ + T +Q L L +D++ AQTG+GKT AF + ++ T Sbjct: 17 NLDQRVLDAITDIGFEHCTPIQAETLPFTLACQDLIGQAQTGTGKTAAFLITAIQSMLET 76 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + + DRF AS P LA+APTRELA+Q+ ++ E L TG V +GG++ ++R L Sbjct: 77 PIPKEDRF--ASEPRVLALAPTRELAMQIAKDAEQLCGYTGHNVVTVVGGMNYDKQRDQL 134 Query: 122 QNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKK 179 QN I+V TPGRL D + + + + L ++LDEAD MLD+GF D++ I+ +PK+ Sbjct: 135 QNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTPKE 194 Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ L+FSAT + + LA + K A V I E + + LV ++ +VN Sbjct: 195 ERQTLLFSATFNQDVLNLASMWTKSAEFVEIEPEQKTAERVKQTVYLVGEDEKLPVLVNY 254 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ + AIVF + R + L +V +SGE++Q +R L+ ++G +V Sbjct: 255 LQRPEVEKAIVFANRRDQCRDLDEDLRNQGVKVALMSGEIAQNKRLKTLEQFKNGSIQVL 314 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVA RGI + + V + L N E+ +HR GRTGRAG+ G+SV Sbjct: 315 VATDVAGRGIHVDGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSV 361 >gi|332284754|ref|YP_004416665.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7] gi|330428707|gb|AEC20041.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7] Length = 444 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 135/391 (34%), Positives = 203/391 (51%), Gaps = 28/391 (7%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-AL 78 Y +T +Q L L +D++ A+TGSGKT AFGL + L P + + AL Sbjct: 6 YQAMTLIQAQSLPLILAGQDLIAQAKTGSGKTAAFGLGIVHKL-------DPGAYNIQAL 58 Query: 79 AIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 + PTREL+ QV EL L G V+ +C GG + + L+ GAHIVVGTPGRL Sbjct: 59 VLCPTRELSEQVANELRRLARAIGNIKVITLC-GGTPIRPQIESLKFGAHIVVGTPGRLM 117 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 DHI ++ S L +VLDEAD MLD+GF DD+ I+ S P R+ +FSAT + I Sbjct: 118 DHIERDTVDFSGLHTLVLDEADRMLDMGFYDDVTKIVGSCPGTRQTQLFSATYADDIRKA 177 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 + + + V + S + S I+ R + R +A+ +L + ++ + FC+T+A Sbjct: 178 SARFLRKPKEVKVESVH-DASQIEQRFYEIDADRRHSAVAQLLEHFRPESTLAFCNTKAQ 236 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 L F +AL G+L Q++R + L + V +ATDVAARG+D+ L+ V Sbjct: 237 CRELAAYLESRGFSALALHGDLEQRDREDVLIQFANRSCSVLVATDVAARGLDIDALDAV 296 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW------E 370 I+ E++ +PE +HR GRTGR KG+++ + R A ++ + N + W + Sbjct: 297 INVEITPDPEVHIHRIGRTGRGDAKGLALSLCAPYEMRWANQIEQYQNQPISWANPKTLK 356 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 PAP L+ P+ IQG +K Sbjct: 357 PAPGGR----------LRAPMVTLCIQGGKK 377 >gi|256379849|ref|YP_003103509.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] gi|255924152|gb|ACU39663.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] Length = 501 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 125/352 (35%), Positives = 186/352 (52%), Gaps = 5/352 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ G +Q A L L +D+L QTGSGKT+AFGLAL S L R P Sbjct: 68 ALATAGITEPFPIQAATLPDSLAGRDLLGRGQTGSGKTLAFGLALLSRL--AGGRAKP-H 124 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA+QV L G+ +GG S R+ L+ G +++ TPG Sbjct: 125 MPRALVLVPTRELAMQVEEALSPFARALGLWCRTVVGGTSFPRQIDALRRGVDLLIATPG 184 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+R ++S + LDEAD+M D+GF + ILD +P+ + L+FSAT+ + Sbjct: 185 RLSDHVRQGTADLSEVMFTALDEADQMADMGFMPQVRAILDLTPENGQRLLFSATLDGDV 244 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L + Y D V ++A + +++ + V+ D+ + + + G I+F T Sbjct: 245 DKLVRQYLHDPVVHSVAPPTGSVTTMEHHLLFVSAEDKQSVVTEVAAREG--RTIMFVRT 302 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V R K L AL G +Q R+ L R+G V IATDVAARGI + D+ Sbjct: 303 KHHVDRLAKKLRSMGVHAGALHGGKAQSARTRVLGQFREGTTPVLIATDVAARGIHVDDV 362 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 LV+H + ++P++ LHR+GRT RAG+ G V ++ + +R + L A + Sbjct: 363 SLVVHVDPPADPKDYLHRAGRTARAGQSGTVVTLVTHDQRRAVQGLTSRAGI 414 >gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Staphylococcus capitis SK14] gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus caprae C87] gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead) [Staphylococcus capitis SK14] gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus caprae C87] Length = 511 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 186/342 (54%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QTLESMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 68 QGVQSLILAPTRELAMQVAEQLREFSKGQNVQVVTVFGGMPIERQIKALKRGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPSDQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + ID +V ++ + N L H AIVF Sbjct: 188 AIQDLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPDLAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|206975837|ref|ZP_03236748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|206745931|gb|EDZ57327.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] Length = 481 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 118/365 (32%), Positives = 192/365 (52%), Gaps = 6/365 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ GY + T VQ ++ L++KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + A G R++ +L+ HIVVGTPG Sbjct: 73 -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI L++ LK +V+DEADEML++GF D +E I+D P R ++FSAT+ + Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ Y + I I++ ++ + + ++ + I+FC T Sbjct: 192 ERLSRTYMNAPTHIEIKVAGITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + R G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 VI+ ++ E+ +HR+GRTGRAG G ++ I R E + + P Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371 Query: 374 SVEAI 378 S E + Sbjct: 372 SKEEV 376 >gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix jacchus] Length = 643 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 221/398 (55%), Gaps = 26/398 (6%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 QN------MQRRAERLFREANVSVVWE--PAPSVEAIR 379 + ++++A F+ V + + S++AIR Sbjct: 495 RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIR 532 >gi|289769255|ref|ZP_06528633.1| helicase [Streptomyces lividans TK24] gi|289699454|gb|EFD66883.1| helicase [Streptomyces lividans TK24] Length = 556 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 189/349 (54%), Gaps = 16/349 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G + +QE L L KDV+ A+TG+GKT+ FGL L + D R Sbjct: 92 EALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 151 Query: 69 FSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P S AP AL + PTREL QV +L V V GG + + L+ G Sbjct: 152 AAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKQGV 211 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGRL D K L++ H+K++VLDEADEMLDLGF D+E I++ P +R+ ++F Sbjct: 212 DVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKIINMLPARRQTMLF 271 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239 SAT+ A+ LA+ Y ++ S + + + + YRA + D+ + IL Sbjct: 272 SATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNM---DKPEMVARIL 328 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G A+VFC T+ + + L + F A+ G+L Q R AL+ R+G+ V + Sbjct: 329 QADGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 388 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ + VI+ + + LHR GRTGRAG KG ++ ++ Sbjct: 389 CTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLV 437 >gi|261409742|ref|YP_003245983.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. Y412MC10] gi|261286205|gb|ACX68176.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10] Length = 538 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 194/336 (57%), Gaps = 13/336 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E+G T VQ+ + L+ KDV+ A+TG+GKT+AF L + + P A Sbjct: 27 LKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQHI-------DPKRA 79 Query: 75 -PLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA+Q+ E + L A G+ + GG V ++ R L+ G +++GT Sbjct: 80 YPQALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKLEGGRQLIIGT 139 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R L + +K +VLDEAD+ML +GF D++E ++ + P +R+ ++FSAT+ Sbjct: 140 PGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQTMLFSATMPA 199 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249 + LA NY V + I + + + V+V +DR +A+ ++ H AI+ Sbjct: 200 GVKQLAGNYMNQPVDIVIKGASPIPLE-QIQQVVVECTDRSKQDALRAMIEEHNPFLAII 258 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ + + L H +Q L G+LSQ +R ++ R+ + ++ +ATDVAARG+D Sbjct: 259 FCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQLLVATDVAARGLD 318 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + + V + ++ + E+ +HR GRTGRAG GM++ Sbjct: 319 VEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAI 354 >gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2] Length = 564 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 64 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 183 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH++ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407 >gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3] Length = 465 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 189/341 (55%), Gaps = 7/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T +Q + L+++D+L AQTG+GKT +F L + + L E R + A Sbjct: 20 AIKSAGYTIPTPIQSGTIPHILQKRDILGIAQTGTGKTASFVLPMLT--LLEKGR-ARAR 76 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + VA+ IGGVS ++ R L+ GA +++ TPG Sbjct: 77 IPRTLILEPTRELATQVQENFDKYGVNHNLNVALLIGGVSFEQQDRKLERGADVLIATPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L + ++ +V+DEAD MLD+GF +IE I +P R+ L FSAT++P I Sbjct: 137 RLLDHFEHGKLLLLGIEILVIDEADRMLDMGFIPNIERICKLTPFTRQTLFFSATMAPEI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGA---KNAIV 249 T L K + V + I + I R V D AI+ L + KNAI+ Sbjct: 197 TKLTKQFLHSPVYIEITKASSTAKKITQRLVKSGSKPWDKRAILRELIHKEGDELKNAII 256 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+ + +S + L +H F V L G++ Q R++ L +D + + +A+DVA+RG+D Sbjct: 257 FCNRKKDISELVRSLIKHNFSVGTLHGDMDQHSRTSTLANFKDNKLTLLVASDVASRGLD 316 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +P + V + ++ ++ E+ +HR GRTGRA R G + ++ + Sbjct: 317 IPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTK 357 >gi|304411084|ref|ZP_07392700.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307301793|ref|ZP_07581551.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304350619|gb|EFM15021.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306913831|gb|EFN44252.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 469 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E LS GY +T +Q L P L +DV+ +TGSGKT AFGL L + L + Sbjct: 21 PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 79 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R L + PTRELA QV +E+ L V V GGV + + L++GAH Sbjct: 80 RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I++ +P++R+ L+FS Sbjct: 134 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243 AT I ++AK D V + H + L D R A+ +L H Sbjct: 194 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 250 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++A+VFC+T+ + L F V+AL G+L Q++R L + A V +ATDV Sbjct: 251 PESAVVFCNTKRETQKVADELDGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 310 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 AARG+D+ L+ V + ++ + E +HR GRTGRAG KG Sbjct: 311 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 349 >gi|163940245|ref|YP_001645129.1| DEAD/DEAH box helicase domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|163862442|gb|ABY43501.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis KBAB4] Length = 450 Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y ++ + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDDLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01] gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01] Length = 423 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 178/339 (52%), Gaps = 1/339 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 LSE + TSVQE + L KDVL AQTG+GKT AFGL + L+ D P Sbjct: 20 TLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQRLIETKDNVIPNP 79 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA QV + T + V V GGVS+ + +L+ GA I+V TP Sbjct: 80 KLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTDNLRGGADILVATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K + +S + +VLDEAD MLD+GF DI+ IL R+ L FSAT Sbjct: 140 GRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNDVRQTLFFSATFDNK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + + +N + V S + + ++ + +VF Sbjct: 200 IKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSELLAYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ K L + +++G+ SQ R AL + G+ R IATDVAARGID+ Sbjct: 260 TKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGIDIQQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 LE V++ ++ E+ +HR GRTGRAG G+++ ++ Q+ Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGNTGLAISLMSQD 358 >gi|253997010|ref|YP_003049074.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera mobilis JLW8] gi|253983689|gb|ACT48547.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8] Length = 502 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 186/335 (55%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L D+L AQTG+GKT F L + L + + AS Sbjct: 23 AINDAGYSAPTPIQANAIPLVLSGGDLLAGAQTGTGKTAGFTLPILHLLSKKPRAEAAAS 82 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L ++PTRELA Q+ ++ + V GGV+ + + L+ I+V TPG Sbjct: 83 RPRCLMLSPTRELAAQIEESVKTYGKHLPLTSTVIFGGVNANPQIARLKKPLDILVATPG 142 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI+ IL PK+R+ L+FSAT S I Sbjct: 143 RLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAILPKQRQNLLFSATFSEEI 202 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V +A N ++ +V + + + + +++++H K +VF T Sbjct: 203 KALADGLLHNPGFVEVARRNTASELVEQTVHMVPQAHKRDLVTHLIKHHDWKQVLVFTRT 262 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + Q A+ G SQ R+ AL +DG RV +ATD+AARG+D+ L Sbjct: 263 KHGANRLAEKLIKDDIQAAAIHGNKSQGARTKALAQFKDGSMRVLVATDIAARGLDIDQL 322 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G +V ++ Sbjct: 323 PQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLV 357 >gi|254381813|ref|ZP_04997176.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1] gi|194340721|gb|EDX21687.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1] Length = 518 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 128/346 (36%), Positives = 187/346 (54%), Gaps = 10/346 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G V+ +QE L L DV+ A+TG+GKT+ FGL L ++ D R Sbjct: 47 EALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVIVPADVEAGR 106 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P +P AL + PTREL QV +L V V GG + + L+ G Sbjct: 107 ATPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 166 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGRL D K L++S +KA+VLDEADEMLDLGF D+E I++ P KR+ ++F Sbjct: 167 DVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVEKIINYLPPKRQTMLF 226 Query: 186 SATISPAITTLAKNYQKDAVRVNIAS---ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 SAT+ A+ LA+ Y + S E ++I D+ + IL+ Sbjct: 227 SATMPGAVIGLARRYMTQPTHIRATSPEGEGVTVANIKQHVFRAHNMDKPELVSRILQAE 286 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G A++FC T+ + + + L + F A+ G+L Q R AL+ R+G+ V + TD Sbjct: 287 GRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 346 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI+ + + + LHR GRTGRAG KG++V ++ Sbjct: 347 VAARGIDVEGVTHVINYQAPEDEKTFLHRVGRTGRAGNKGIAVTLV 392 >gi|218903612|ref|YP_002451446.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] gi|218537452|gb|ACK89850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH820] Length = 450 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE + I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS 112818] gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97] Length = 474 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 191/340 (56%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A + GY N T +Q + L+ +D++ A+TGSGKT AF L + L+ + + Sbjct: 62 DACTSLGYKNPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELAVQ+ E L + V AV +GG+ + + L HI+V TP Sbjct: 119 ---FGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL P++RR +FSAT+S Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q S + + + +D +V+IL + I+F Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQTTIIF 295 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R + +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 296 TRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDI 355 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P ++LV++ +L S+ + +HR GRT RAG+ G ++ V+ Q Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395 >gi|229513487|ref|ZP_04402951.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21] gi|229349364|gb|EEO14320.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21] Length = 439 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 205/355 (57%), Gaps = 9/355 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +T +Q L L+ +DV+ +TGSGKT AFGL + S L + R AL Sbjct: 2 GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ------AL 55 Query: 79 AIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV ++ L A + V GG+ + + L++GAHI+VGTPGR+ D Sbjct: 56 VLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILD 115 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+ +++S L +VLDEAD ML++GF++ +E I+ ++ +R+ L+FSAT +I +A Sbjct: 116 HLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAAAERQTLLFSATYPASIEQIA 175 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 ++ ++A+ + + + + S Y + + RD A+ +L +H +++VFC+T+ V Sbjct: 176 QSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTSSVVFCNTKREV 235 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 L + F V+ L G++ Q+ER AL + + +ATDVAARG+D+ +L+ V Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +LS +PE +HR GRTGRAG KG++ N R ++ ++++ EP+ Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAI--EPS 348 >gi|229524545|ref|ZP_04413950.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis VL426] gi|229338126|gb|EEO03143.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis VL426] Length = 439 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 206/355 (58%), Gaps = 9/355 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +T +Q L L+ +DV+ +TGSGKT AFGL + S L + R AL Sbjct: 2 GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ------AL 55 Query: 79 AIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV ++ L A + V GG+ + + L++GAHI+VGTPGR+ D Sbjct: 56 VLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILD 115 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+FSAT +I +A Sbjct: 116 HLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPASIEQIA 175 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 ++ ++A+ + + + + S Y + + RD A+ +L +H +++VFC+T+ V Sbjct: 176 QSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTSSVVFCNTKREV 235 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 L + F V+ L G++ Q+ER AL + + +ATDVAARG+D+ +L+ V Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +LS +PE +HR GRTGRAG KG++ N R ++ ++++ EP+ Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAI--EPS 348 >gi|119510101|ref|ZP_01629241.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414] gi|119465288|gb|EAW46185.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414] Length = 500 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 123/353 (34%), Positives = 190/353 (53%), Gaps = 8/353 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L G+ T++Q + L +DV+ +QTG+GKT AF L + L + Sbjct: 16 EQLENIGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPILEQLDVNH------ 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL +APTRELA+QV + G+ + GG S+ R+ L+ G H+VVGTP Sbjct: 70 KAVQALVLAPTRELAIQVHDAINQFVGDEGLRILAIYGGQSIERQMMQLKRGVHMVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L + +K VLDEADEML +GF DD+ IL +PK+R+ +FSAT+ P+ Sbjct: 130 GRMIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPKERQTALFSATMPPS 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251 I + + ++ V + + I+ A L+ + A+ IL + A++F Sbjct: 190 IRMIVNKFLRNPATVTVEQPKASPNKINQVAYLIPRHWTKAKALQPILEMEDPETALIFV 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR + + T +L V G+LSQQ R L R+ + R +ATD+AARG+D+ Sbjct: 250 RTRRTAAELTNLLQGAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAARGLDVD 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 L VI+ +L + E +HR GRTGRAG++G ++ ++ Q +RR ++ F N Sbjct: 310 LLSHVINFDLPDSAETYVHRIGRTGRAGKEGTAISLV-QPFERRKQQAFERHN 361 >gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122] gi|123548216|sp|Q2YUH3|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122] Length = 506 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVWKQ------ 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTP Sbjct: 69 -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349 >gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus] gi|297491479|ref|XP_002698910.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus] gi|296472173|gb|DAA14288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus] Length = 737 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E IL S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 Q 350 + Sbjct: 495 R 495 >gi|229507384|ref|ZP_04396889.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286] gi|229509692|ref|ZP_04399173.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33] gi|229516817|ref|ZP_04406263.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9] gi|229521626|ref|ZP_04411044.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80] gi|229527506|ref|ZP_04416898.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)] gi|229606890|ref|YP_002877538.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236] gi|229335138|gb|EEO00623.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)] gi|229341220|gb|EEO06224.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80] gi|229345880|gb|EEO10852.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9] gi|229353166|gb|EEO18105.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33] gi|229354889|gb|EEO19810.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286] gi|229369545|gb|ACQ59968.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236] Length = 439 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 206/355 (58%), Gaps = 9/355 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +T +Q L L+ +DV+ +TGSGKT AFGL + S L + R AL Sbjct: 2 GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ------AL 55 Query: 79 AIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV ++ L A + V GG+ + + L++GAHI+VGTPGR+ D Sbjct: 56 VLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILD 115 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+FSAT +I +A Sbjct: 116 HLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPASIEQIA 175 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 ++ ++A+ + + + + S Y + + RD A+ +L +H +++VFC+T+ V Sbjct: 176 QSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTSSVVFCNTKREV 235 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 L + F V+ L G++ Q+ER AL + + +ATDVAARG+D+ +L+ V Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +LS +PE +HR GRTGRAG KG++ N R ++ ++++ EP+ Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAI--EPS 348 >gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus leucogenys] Length = 643 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 221/398 (55%), Gaps = 26/398 (6%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 QN------MQRRAERLFREANVSVVWE--PAPSVEAIR 379 + ++++A F+ V + + S++AIR Sbjct: 495 RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIR 532 >gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1] gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1] Length = 447 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 9 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 61 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 62 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 122 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 182 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 242 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 302 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 >gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens] Length = 643 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 221/398 (55%), Gaps = 26/398 (6%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 QN------MQRRAERLFREANVSVVWE--PAPSVEAIR 379 + ++++A F+ V + + S++AIR Sbjct: 495 RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIR 532 >gi|302690998|ref|XP_003035178.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8] gi|300108874|gb|EFJ00276.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8] Length = 449 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 188/339 (55%), Gaps = 7/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL + + T +Q L L +D++ A TGSGKT AF L + L + Sbjct: 27 EALDKMSFKAPTEIQAQALPHALEGRDIIGVASTGSGKTAAFALPILQKL------WDDP 80 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A +APTRELA Q+ ++ E L + GV AV +GG + ++ L HIVV TP Sbjct: 81 KGLFACVLAPTRELAYQISQQFEALGSAMGVRCAVIVGGTDIMAQKVALAKRPHIVVATP 140 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ + KG N+ +K +VLDEAD +LD+ F I+ IL PK+R +FSAT++ Sbjct: 141 GRLDDHLEKTKGFNLRGIKFLVLDEADRLLDMDFGPVIDKILKVIPKERTTYLFSATMTT 200 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + + VRV + ++ + + +L+ L ++D +V + + I+F Sbjct: 201 KVAKLQRASLSNPVRVEVNTKYQTVDSLLQYYLLMPLKEKDTLLVYLANTLAQNSIIIFT 260 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T +R + +L F V L G+LSQ +R AL + G +V +ATDVA+RG+D+P Sbjct: 261 RTVNDAARLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGGRKVLVATDVASRGLDIP 320 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ ++ ++ +HR GRT RAGR G S+ + Q Sbjct: 321 SVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITFVTQ 359 >gi|194205945|ref|XP_001503679.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Equus caballus] Length = 738 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 Q 350 + Sbjct: 495 R 495 >gi|296220523|ref|XP_002756345.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Callithrix jacchus] Length = 711 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 Q 350 + Sbjct: 495 R 495 >gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018] gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018] Length = 435 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 1/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A+ E GY T +Q + L +KDVL +AQTG+GKT F L L L N + Sbjct: 12 ILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQRLKDSNFK-D 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + AL + PTRELA QV + +E AV GGV ++ ++ L+ G I++ Sbjct: 71 KKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D I L++S ++ +VLDEAD MLD+GF +DI+ IL PK+R+ L+FSAT S Sbjct: 131 TPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQRQNLLFSATFS 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA K V V ++ N ++ V + +++++ + + +VF Sbjct: 191 NEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSWQQVLVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ ++ L + A+ G SQ R+ AL ++G+ RV +ATD+AARGID+ Sbjct: 251 TRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAARGIDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL + E+ +HR GRTGRAG G+++ ++ Sbjct: 311 EQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLV 348 >gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus] gi|55976576|sp|Q99MJ9|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD box protein 50; AltName: Full=Gu-beta; AltName: Full=Nucleolar protein Gu2 gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus] Length = 734 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 16/348 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q P KD++ A+TG+GKT +F + L L + + + Sbjct: 149 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV ++ + + K + VA GG S + ++NG I+VGTPGR Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGR 266 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189 + DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K + L+FSAT Sbjct: 267 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 326 Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y K +V++ + Q + +++ A+ S R I ++L+ Y G++ Sbjct: 327 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 386 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+FC T+ +V+ + H+ Q L G+++Q +R L+ R+G +V +AT+V Sbjct: 387 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 444 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ V F P+ Sbjct: 445 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492 >gi|294631256|ref|ZP_06709816.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14] gi|292834589|gb|EFF92938.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14] Length = 960 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/351 (37%), Positives = 185/351 (52%), Gaps = 16/351 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67 EAL G +QE L L DV+ A+TG+GKT+ FGL L + D Sbjct: 70 TAEALEAVGITTPFPIQEMTLPVALTGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEA 129 Query: 68 -RFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 R P + AP AL + PTREL QV +L V V GG + + L+N Sbjct: 130 GRAKPEALTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVVAIYGGRAYEPQVEALKN 189 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGRL D K LN+ H+KA+VLDEADEMLDLGF D+E I+ P KR+ + Sbjct: 190 GVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIIGMLPAKRQTM 249 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVN 237 +FSAT+ A+ LA+ Y + + + + + + YRA + D+ + Sbjct: 250 LFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFIYRAHNM---DKPEMVAR 306 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL+ G A++FC T+ + + L + F A+ G+L Q R AL+ R+G+ V Sbjct: 307 ILQAEGRGLAMIFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDV 366 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + TDVAARGID+ + VI+ + + LHR GRTGRAG KG ++ ++ Sbjct: 367 LVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLV 417 >gi|169346889|ref|ZP_02865837.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens C str. JGS1495] gi|169296948|gb|EDS79072.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens C str. JGS1495] Length = 478 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 202/374 (54%), Gaps = 6/374 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +AL+ GY N + VQEA + L+ +D++V +QTGSGKT +FG+ + + E Sbjct: 7 NLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCEKINIE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L + PTRELA+QV EL + V G + + R+L+ Sbjct: 67 EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCVAIFGKQPFNEQIRELKQRV 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L++S + VV+DEAD+ML +GF D I+ IL + +F Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I + + Y ++ + + + S+ I+ A+ + ++ A+ L + + Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCLYAYHPE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AIVFC+TR V K+L + L G++ Q++R ++ RD +V + TD+AA Sbjct: 241 SAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + +ELVI+ E+ E+ +HR GRTGRAGR+G ++ + ++ E + Sbjct: 301 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 360 Query: 366 SVVWEPAPSVEAIR 379 + PS E ++ Sbjct: 361 EIKKVSLPSDEEVK 374 >gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450] gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450] Length = 420 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 198/384 (51%), Gaps = 5/384 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + + + G+ T +QE + L KDVL AQTG+GKT AFGL L + LL + Sbjct: 9 LSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLLNKLLDQE 68 Query: 67 DRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P S LAL + PTRELA QV L + + + GG S++ + ++L+ G Sbjct: 69 ASRDPQSNDVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTAYGGTSMNVQTQNLRQGC 128 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH+ K +N+ +VLDEAD MLD+GF DI+ IL +R+ L F Sbjct: 129 DVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDIQRILKKLNPERQTLFF 188 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I T+A + V V + N + V + + ++ + Sbjct: 189 SATFDKRIKTIAHKLMNEPVEVQVTPSNSTAEKVKQMVYPVDKKRKAELLAYLIGSRNWQ 248 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ K L + +++G+ SQ R AL + G R IATDVAA Sbjct: 249 QVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGTIRALIATDVAA 308 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EA 363 RG+D+ LE V++ ++ E+ +HR GRTGRAG++G++V ++ ++ + E + R +A Sbjct: 309 RGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGQEGLAVSLMSKDEEYLLEAIERLLDA 368 Query: 364 NVSVVWEPA--PSVEAIRERDAQR 385 + W PS+E E + +R Sbjct: 369 RLPQEWLQGFEPSIEEPTENERER 392 >gi|163868666|ref|YP_001609875.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476] gi|161018322|emb|CAK01880.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476] Length = 467 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 201/364 (55%), Gaps = 5/364 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ + L G +QE + L+ D+L AQTGSGKT+AFGL + S +LA Sbjct: 25 LPTLLIKNLCIAGMSKPKPIQEQAIPMMLKGHDILGIAQTGSGKTLAFGLPILSQILALG 84 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 D+ P +A AL +APTRELAVQ+ + + + + GGVS ++ + + G Sbjct: 85 DKRCPKTAR-ALILAPTRELAVQIDEAIRTMAKGAHLSTCLVFGGVSRLKQIKRMAAGVD 143 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL D +R K +++S + ++LDEAD MLD+GF D++ I ++R+ +FS Sbjct: 144 VLIATPGRLRDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQTALFS 203 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I LAK D V++ +A + +I + V S++ N + +L + Sbjct: 204 ATMPKEIAALAKCLLNDPVKIEVAPQGTTALEITQKLYCVPTSEKKNVLSKLLTNPAFDS 263 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ T LA++ + V + G SQ R +AL+ R+ ++ +ATD+AAR Sbjct: 264 VIVFTRTKHGADAVTLHLAKNGYLVATIHGNKSQGARQSALKAFRERSVKILVATDIAAR 323 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR----AERLFRE 362 GID+P + VI+ +L E+ +HR GRTGR G G ++ + + ++R ERL R Sbjct: 324 GIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERTRLRAVERLIRM 383 Query: 363 ANVS 366 VS Sbjct: 384 KLVS 387 >gi|89097884|ref|ZP_01170771.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] gi|89087386|gb|EAR66500.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] Length = 485 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 121/350 (34%), Positives = 196/350 (56%), Gaps = 10/350 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + +A+S G+ T +Q + L KD++ AQTG+GKT AFG+ L Sbjct: 8 NLSKELEKAVSNMGFEEPTPIQAQAIPIGLSGKDMIGQAQTGTGKTTAFGIPLL------ 61 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-- 123 ++ L +APTRELAVQV EL + GV GG + R+ R L+ Sbjct: 62 -EKIDINEGIQGLVLAPTRELAVQVAEELNRIGQVKGVRTLPIYGGQDISRQIRALKKDR 120 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G HI+ TPGRL DHI K + ++ +K VLDEADEML++GF +DIE IL P++R+ L Sbjct: 121 GPHIIAATPGRLIDHIERKTIRLNKIKLAVLDEADEMLNMGFIEDIERILSEVPEQRQTL 180 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I +LA+ + + V I ++ +I+ + V + + + ++L Sbjct: 181 LFSATMPRRIQSLAERFMTEPEMVQIKAKELTVKNIEQHYMEVHEKQKFDVLCSLLDIQS 240 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AIVF T+ V + L + + + G++ Q +R ++ ++ + +ATDV Sbjct: 241 PELAIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDVPQNKRDQVIRRFKEQTIDIMVATDV 300 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 AARG+D+ + V + ++ +PE+ +HR GRTGRAG+KG++V FV P+ + Sbjct: 301 AARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGLAVTFVSPREI 350 >gi|319893030|ref|YP_004149905.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius HKU10-03] gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius HKU10-03] gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus pseudintermedius ED99] Length = 495 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 193/344 (56%), Gaps = 13/344 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L G+ T +Q+ + L D+L AQTG+GKT AFG+ L ++ + Sbjct: 15 ETLEAMGFTEPTPIQKDSIPFALENIDILGQAQTGTGKTGAFGIPLIEKVVGK------- 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 68 EGVRALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQIKSLKRGPQIVVGTP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L ++ ++LDEADEM+++GF DD+ +I+D P + R+ ++FSAT+ Sbjct: 128 GRVIDHLNRRTLKPQQIETLILDEADEMMNMGFIDDMRYIMDKLPSENRQTMLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI L + + K + R+ I + N + SD ID +V ++ + N L H + AIV Sbjct: 188 AIQELVQKFMK-SPRI-IKTMNNEISDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + + V + ++ + E+ HR GRTGRAG+ G++V FV P M Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKHGIAVTFVNPIEM 349 >gi|229917498|ref|YP_002886144.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b] gi|229468927|gb|ACQ70699.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b] Length = 481 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 201/371 (54%), Gaps = 13/371 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 I AL Y + T VQ+ ++ L +D++V AQTGSGKT AFG+ + + AEN Sbjct: 15 ITRALGIMKYESPTEVQQQVIPRALEREDLVVKAQTGSGKTAAFGIPVIELIDWAEN--- 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L + PTRELAVQV ++ + + G ++R +L+ HIVV Sbjct: 72 ----KPQVLVLTPTRELAVQVREDMTNIGRFKRIKATAVYGKEPFSKQREELKQKTHIVV 127 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DHI + L++ ++ +++DEADEML+ GF D+E IL PK R ++FSAT Sbjct: 128 GTPGRVMDHIERETLSLDRIEYLIIDEADEMLNRGFLADVEKILQQLPKDRVTMVFSATF 187 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I L + + RV I S S I++R + V +++ + +I + ++ Sbjct: 188 PQDIERLCQKHMNAPARVAIESTGMTASTIEHRLLPVHRNEKLAVLQDITVVENPDSCMI 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ +V L + + L G L Q++R + + G R +ATDVAARGID Sbjct: 248 FCRTKENVDTVYAELDKAGYSAERLHGGLEQEDRFAVMNGFKMGNFRYLVATDVAARGID 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + ++ELVI+ ++ E+ +HR+GRTGRAG++G ++ + M R+ ERL V + Sbjct: 308 VDNVELVINYDVPVEKESYVHRTGRTGRAGKQGTAITL----MTRQEERLIGAIESYVQF 363 Query: 370 EPAPSVEAIRE 380 E P ++A E Sbjct: 364 E-IPMIDAPTE 373 >gi|126696546|ref|YP_001091432.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9301] gi|126543589|gb|ABO17831.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9301] Length = 593 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 159/543 (29%), Positives = 261/543 (48%), Gaps = 60/543 (11%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I +L +GY N T +Q+A + + +D+L AQTG+GKT AF L L L +N Sbjct: 60 QSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL-TDNKE 118 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 + L + PTRELA QV + +++ V I GG + L+ + Sbjct: 119 LNAK----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDV 174 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ DHIR I + +VLDEADEML++GF +DIE+I+D P+ ++M++FSA Sbjct: 175 VVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSA 234 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I +AK Y D + I S ++ I + + V + +A+ IL + + Sbjct: 235 TMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGV 293 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + + L V L+G++ Q +R N + ++ G + +ATDVAARG Sbjct: 294 IIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARG 353 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLF 360 +D+ ++LV++ + + E HR GRTGRAGR G ++ + +N++ Sbjct: 354 LDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNLREKHFLRNLENSTRTKI 413 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEK 415 E N+ PS + I E+ ++++ D S+ DE + ++DVL + EK Sbjct: 414 EEINI-------PSNKIINEKRMEKLI-DSFNESSLAKDENEENKALIIDVL--DNLKEK 463 Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRF---RDDSRAFK-----------------V 455 + I A ++LV G F DDS K Sbjct: 464 YSMDDSNIAMAA---------INLVIGNKSFFVNDDDSWINKQNNTDRNRSNRNNNNRMR 514 Query: 456 GGGSRDNFKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 R+N++ S+ + + G ++ +C S+ IN +SIG I++ D + V++ Sbjct: 515 NSSRRNNYQNDSFETYKFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDL 574 Query: 514 SAD 516 D Sbjct: 575 PRD 577 >gi|120597664|ref|YP_962238.1| ATP-dependent RNA helicase DbpA [Shewanella sp. W3-18-1] gi|120557757|gb|ABM23684.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] Length = 458 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E LS GY +T +Q L P L +DV+ +TGSGKT AFGL L + L + Sbjct: 10 PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R L + PTRELA QV +E+ L V V GGV + + L++GAH Sbjct: 69 RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I++ +P++R+ L+FS Sbjct: 123 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243 AT I ++AK D V + H + L D R A+ +L H Sbjct: 183 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 239 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++A+VFC+T+ + L F V+AL G+L Q++R L + A V +ATDV Sbjct: 240 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 299 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 AARG+D+ L+ V + ++ + E +HR GRTGRAG KG Sbjct: 300 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338 >gi|239995610|ref|ZP_04716134.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126] Length = 483 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 193/346 (55%), Gaps = 11/346 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ +RG+ + +QE + L+ KDVL +AQTG+GKT FGL + L+ E S Sbjct: 14 KAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQRLM-EGQPVS-G 71 Query: 73 SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + AL + PTRELA QV + E+L KT AV GGV ++ + L+ G ++ Sbjct: 72 NNVRALILTPTRELAAQVEESIRAFSEFLPLKT----AVVFGGVGINPQMMKLRKGVDVL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D + + S L+ +VLDEAD MLD+GF DI +L P++R+ L+FSAT Sbjct: 128 IATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIRRVLKLLPQERQSLLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S IT LAK ++ V ++ A N + V + S + A++ +++ + + Sbjct: 188 FSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQQKWEQVL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L A+ G SQ R+ AL ++G +V +ATD+AARGI Sbjct: 248 VFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVATDIAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 D+ +L +V++ +L + + +HR GRTGRAG G + FV + +Q Sbjct: 308 DISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQ 353 >gi|114704563|ref|ZP_01437471.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Fulvimarina pelagi HTCC2506] gi|114539348|gb|EAU42468.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Fulvimarina pelagi HTCC2506] Length = 508 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 195/359 (54%), Gaps = 6/359 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T +Q + L +DVL AQTG+GKT +F L + + L E R + A Sbjct: 16 AVEATGYTQPTPIQAEAIPHALERRDVLGIAQTGTGKTASFVLPMLTML--EKGR-ARAR 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L I PTRELA QV + + VA+ IGG+S + + L G +++ TPG Sbjct: 73 MPRTLIIEPTRELAAQVEESFARYGKEQKLNVALLIGGMSFEEQDKKLDRGCDVLIATPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FSAT+ P I Sbjct: 133 RLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLLPFTRQTLFFSATMPPEI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYH-GAKNAIVF 250 T L + + ++ VRV +A ++ R V D D + ++LR + NAI+F Sbjct: 193 TKLTQQFLQNPVRVEVAKPASAALTVEQRLVASGAKDYDKRARLRDLLRANEDVTNAIIF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + VS + L +H F AL G++ Q+ R L R+ + ++ +A+DVAARG+D+ Sbjct: 253 CNRKRDVSTLFRSLEKHGFSAGALHGDMDQRARMTMLHNFREDKLQLLVASDVAARGLDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 P + V + ++ + E+ +HR GRTGRAGR G + ++ ++ + + + + + W Sbjct: 313 PAVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSETKHLDAIKKLIGTEIEW 371 >gi|146294198|ref|YP_001184622.1| ATP-dependent RNA helicase DbpA [Shewanella putrefaciens CN-32] gi|145565888|gb|ABP76823.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 458 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E LS GY +T +Q L P L +DV+ +TGSGKT AFGL L + L + Sbjct: 10 PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R L + PTRELA QV +E+ L V V GGV + + L++GAH Sbjct: 69 RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I++ +P++R+ L+FS Sbjct: 123 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243 AT I ++AK D V + H + L D R A+ +L H Sbjct: 183 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 239 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++A+VFC+T+ + L F V+AL G+L Q++R L + A V +ATDV Sbjct: 240 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 299 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 AARG+D+ L+ V + ++ + E +HR GRTGRAG KG Sbjct: 300 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338 >gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163] gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163] Length = 458 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 116/333 (34%), Positives = 187/333 (56%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL E+GYV+ + +QE + L +DVL AQTG+GKT AF L + L+ +++ Sbjct: 26 KALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPIIQNLMKPSEKKYSK 85 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTR+LA+Q+ + ++T V AV GGVS + + +L+ G I+V TP Sbjct: 86 RVIRSLILTPTRKLALQIAENFKEYGSRTSVRCAVIFGGVSANPQIEELRRGIDILVATP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + +++++++ VLDEAD MLD+GF D++ I+ P +++ L+FSAT+ Sbjct: 146 GRLNDLVGQGFVDLAYVEIFVLDEADRMLDMGFIHDVKKIISLLPVRKQTLLFSATMPAE 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L + RV + + ID V ++ + +V +L + + +VF Sbjct: 206 IQALTDKLLHNPARVEVTPVSSTVDIIDASLYYVDKENKRSLLVYLLNHEDITSTLVFTR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R K L ++ A+ G+ SQ R AL + G +V +ATD+AARGID+ + Sbjct: 266 TKHGADRVAKFLVKNRISAAAIHGDKSQGARQTALSHFKSGEIQVLVATDIAARGIDIEE 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L VI+ +L + PE +HR GRTGRAG G ++ Sbjct: 326 LSCVINFDLPNIPETYIHRIGRTGRAGLDGRAI 358 >gi|315101547|gb|EFT73523.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1] Length = 560 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 60 ICQALEGVGIVSPFQIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH++ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403 >gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1] gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1] Length = 506 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 140/400 (35%), Positives = 210/400 (52%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 39 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 97 Query: 68 --------------------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L+ L Sbjct: 98 AQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 157 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 158 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF +DIE I++++P+ R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 269 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ FQ AL G+ Sbjct: 270 IAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGD 329 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 330 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 389 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371 AGR G++V ++ Q +R ER R NV +EP Sbjct: 390 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 429 >gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus] Length = 689 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 199/348 (57%), Gaps = 16/348 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q P KD++ A+TG+GKT +F + L L + + + Sbjct: 149 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV ++ + + K V A GG S + ++NG I+VGTPGR Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRKLNV--ACFYGGTSYQSQINQIRNGIDILVGTPGR 266 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189 + DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K + L+FSAT Sbjct: 267 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDSEDNPQTLLFSATC 326 Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y K +V++ + Q + +++ A+ S R I ++L+ Y G++ Sbjct: 327 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 386 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+FC T+ +V+ + H+ Q L G+++Q +R L+ R+G +V +AT+V Sbjct: 387 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 444 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ V F P+ Sbjct: 445 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492 >gi|42781571|ref|NP_978818.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987] gi|42737494|gb|AAS41426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus ATCC 10987] Length = 447 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + + E Sbjct: 9 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 68 -----CSDVQALIVAPTRELALQITNEIKKMLVQRDDINVLAIYGGQDVAQQLRKLKGNT 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + I SE + I+ R + + +A+ ++ Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQIQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 243 LAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 303 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 >gi|117921821|ref|YP_871013.1| ATP-dependent RNA helicase DbpA [Shewanella sp. ANA-3] gi|117614153|gb|ABK49607.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 479 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 126/336 (37%), Positives = 193/336 (57%), Gaps = 8/336 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E L+ GY +T +Q L L +DV+ +TGSGKT AFGL L + L + Sbjct: 31 PELL-ENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 89 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R L + PTRELA QV +E+ L V V GGV + + L++GAH Sbjct: 90 RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAH 143 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I++ SP++R+ L+FS Sbjct: 144 IIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFS 203 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I ++AK D V V +A + + + + L R A+ +L ++ Sbjct: 204 ATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPES 263 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VFC+T+ + L++ F V+AL G+L Q++R L + A V +ATDVAAR Sbjct: 264 AVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAAR 323 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 G+D+ L+ V + ++ + E +HR GRTGRAG KG Sbjct: 324 GLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 359 >gi|294142598|ref|YP_003558576.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12] gi|293329067|dbj|BAJ03798.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12] Length = 438 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 122/341 (35%), Positives = 198/341 (58%), Gaps = 9/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66 I AL+E G+ T +Q A L L++KD+ AQTG+GKT+AF +A L +T + E Sbjct: 20 IKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFEHLLTTPIPEG 79 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + P A+ +APTRELA+Q+ ++ L TG+ V + GG S +R+ L G Sbjct: 80 RQLN---QPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYEVQRKVLDKGID 136 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184 I++GT GR+ D++R +N+S ++AVVLDEAD M DLGF DI F+ P K R ++ Sbjct: 137 ILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNML 196 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + LA ++ + +V IA + +I ++ ++ +++++ Sbjct: 197 FSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEEDWP 256 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF +T+ S L+ +V L+G++ Q++R L+ G + +ATDVA Sbjct: 257 EKAIVFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTGELDILVATDVA 316 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ + D+ V + +L + E+ +HR GRTGRAG+KG+S+ Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGISI 357 >gi|21231720|ref|NP_637637.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768154|ref|YP_242916.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv. campestris str. 8004] gi|188991291|ref|YP_001903301.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv. campestris str. B100] gi|21113422|gb|AAM41561.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573486|gb|AAY48896.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167733051|emb|CAP51249.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris] Length = 458 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 144/415 (34%), Positives = 214/415 (51%), Gaps = 20/415 (4%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P L+ DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTTLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLLVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + +VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT I TLA+ KD V + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLARELLKDPVEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRESA 351 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R AQ L L +D + D+ + D+L Sbjct: 352 RAQALEAEHGQPLKWSRAPLATA---RPAQLPLAAMTTLRIDGGKTDKLRAGDIL 403 >gi|115398415|ref|XP_001214799.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624] gi|121737771|sp|Q0CL13|DBP3_ASPTN RecName: Full=ATP-dependent RNA helicase dbp3 gi|114192990|gb|EAU34690.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624] Length = 493 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 125/350 (35%), Positives = 195/350 (55%), Gaps = 9/350 (2%) Query: 4 FENIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 F ++P+ + + + TS+Q A +DV+ A+TGSGKT+AFGL + Sbjct: 81 FSHLPECNSNLYEQLNSFKSPTSIQSATWPLLFGGRDVIGIAETGSGKTLAFGLPCLKKI 140 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + S P+A+ I+PTRELA+Q+ +L+ G VA GGV E+R++ Sbjct: 141 EDSKKKKSKPYQPMAVIISPTRELAMQIHDQLQKFAGPVGAKVACIFGGVR-KDEQREVL 199 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRR 181 A+IVV TPGRL D +++ ++ +VLDEAD MLD GF DI+ I+ P KR+ Sbjct: 200 KTANIVVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPVSKRQ 259 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVN 237 +MF+AT P + LA + V V I +++ R ++ I +V +++ +V Sbjct: 260 TVMFTATWPPVVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEGRLVQ 319 Query: 238 ILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +L+ H GA+ + FC + +R + L F+V + G+LSQQER +L + G A Sbjct: 320 LLKQHQRGAEKVLAFCLYKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFKTGAA 379 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V +ATDVAARG+D+P ++LVI+ E+ +HR GRTGRAG +G ++ Sbjct: 380 TVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAI 429 >gi|91228876|ref|ZP_01262779.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio alginolyticus 12G01] gi|91187564|gb|EAS73893.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio alginolyticus 12G01] Length = 419 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 125/355 (35%), Positives = 190/355 (53%), Gaps = 8/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q + E L V T VQE + L K++L +AQTG+GKT AFGL + T+ + Sbjct: 10 IEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPIIQTV--QQ 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + P AL + PTRELA QV L A+T + + GG S+ ++R L+ GA Sbjct: 68 KKLN--GTPQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLEEGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH+ +NIS +VLDEAD MLD+GF D++ I P ++++L+FS Sbjct: 126 ILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I T+A + V V ++ N + V + + ++ + Sbjct: 186 ATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGSRNWQQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ K L + V+++G+ SQ R AL + G+ R IATDVAAR Sbjct: 246 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 G+D+ +LE V++ ++ E+ +HR GRTGRAG+ G++V + M R E L + Sbjct: 306 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSL----MSRDEEYLLQ 356 >gi|222096052|ref|YP_002530109.1| ATP-dependent RNA helicase [Bacillus cereus Q1] gi|221240110|gb|ACM12820.1| ATP-dependent RNA helicase [Bacillus cereus Q1] Length = 451 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + + E Sbjct: 9 ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 68 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE + I+ R + + +A+ ++ Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 303 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 >gi|118463537|ref|YP_882142.1| ATP-dependent RNA helicase [Mycobacterium avium 104] gi|118164824|gb|ABK65721.1| ATP-dependent RNA helicase [Mycobacterium avium 104] Length = 455 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 192/365 (52%), Gaps = 4/365 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P I +AL+ RG + +Q L L +DVL +TGSGKT+AF + L L Sbjct: 11 GVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVGRLSTG 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N R PA P L +APTRELA Q+ LE L A G+ V+ GGVS HR+ L+ G Sbjct: 71 NRR--PAR-PTGLVLAPTRELATQITATLEPLAAACGLRVSTIFGGVSQHRQVTALKAGV 127 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL D +R + + + ++ V+DEAD M DLGF + IL ++P + L+F Sbjct: 128 DIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRLLF 187 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + +DAV ++ N S++ + V + +V+ L G Sbjct: 188 SATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHVFHVDSAQAKKELVHRL-ASGTG 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + + L E V L G LSQ R L M G ARV +ATD+AA Sbjct: 247 RRILFLRTKHQARKLARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + ++ELV+H + S ++ LHRSGRT RAG G V V+ + L R+A + Sbjct: 307 RGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRALMRKAGI 366 Query: 366 SVVWE 370 V + Sbjct: 367 DVAPQ 371 >gi|113968755|ref|YP_732548.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-4] gi|114049101|ref|YP_739651.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-7] gi|123030016|sp|Q0HN76|RHLB_SHESM RecName: Full=ATP-dependent RNA helicase rhlB gi|123326096|sp|Q0HQL1|RHLB_SHESR RecName: Full=ATP-dependent RNA helicase rhlB gi|113883439|gb|ABI37491.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] gi|113890543|gb|ABI44594.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 439 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 196/341 (57%), Gaps = 9/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66 + +AL+E G+ T +Q L L+ KD+ AQTG+GKT+AF +A L ST + EN Sbjct: 20 VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPEN 79 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + P A+ +APTRELA+Q+ ++ L T + V + GG S +R+ L G Sbjct: 80 RQLN---QPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVD 136 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184 I++GT GR+ D++R ++++ ++AVVLDEAD M DLGF DI F+ P +R ++ Sbjct: 137 ILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNML 196 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + LA ++ D V+V IA E + +I + D+ ++ ++ Sbjct: 197 FSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKIRLLLTLIEEDWP 256 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF +T+ S L +V L+G++ Q++R L+ G+ + +ATDVA Sbjct: 257 EKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVA 316 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ + D+ V + +L + E+ +HR GRTGRAG KG+SV Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSV 357 >gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus leucogenys] Length = 737 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 Q 350 + Sbjct: 495 R 495 >gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens] gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Pongo abelii] gi|55976580|sp|Q9BQ39|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD box protein 50; AltName: Full=Gu-beta; AltName: Full=Nucleolar protein Gu2 gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens] gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens] gi|55664207|emb|CAH72376.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens] gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens] gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct] gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct] Length = 737 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 Q 350 + Sbjct: 495 R 495 >gi|163755968|ref|ZP_02163085.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1] gi|161324139|gb|EDP95471.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1] Length = 411 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 185/335 (55%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL E+ Y T VQE + L +KD++VSAQTG+GKT A+ L + L + D Sbjct: 12 IIRALFEKNYEEPTLVQERAIPVILTKKDIIVSAQTGTGKTAAYALPILQLLFDKQDAPK 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA+Q+ + T + V GG S+ ++ L+ G I+V Sbjct: 72 KGKKIKALVVCPTRELAIQIEENFQTYSKYTNLRTGVIFGGASIEPQKDMLKKGIDILVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + +N+ +++ +VLDEAD MLD+GF DD++ I P +++L+FSAT+ Sbjct: 132 TPGRLLDLHKQDVVNLDYVEILVLDEADLMLDMGFIDDVKKIERLCPDGKQILLFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + LA + K V ++ + +D V + +++LR N I+F Sbjct: 192 YKVEHLANSILKSPAYVEVSPTSSAAKGVDQVLYYVPKPKKIELCLHLLRNTIKGNVIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V + K L + ++V ++ G+ SQ R AL + G A++ IATDVAARGID+ Sbjct: 252 RRTKYGVDKLEKTLLRNNYKVASIHGDKSQNLRQEALNAFKKGEAKIFIATDVAARGIDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +++ VI+ ++ + E +HR GRT RAG GM++ Sbjct: 312 KNVDAVINFDIPNVSETYVHRIGRTARAGASGMAL 346 >gi|298241052|ref|ZP_06964859.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM 44963] gi|297554106|gb|EFH87970.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM 44963] Length = 562 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 138/401 (34%), Positives = 210/401 (52%), Gaps = 20/401 (4%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F+++P L+ T +Q + L KDV+ + TGSGKT+A+ + L Sbjct: 1 MPSFQDLPLQPATRAVLASMQITEQTPIQAEAIPALLAGKDVIGQSATGSGKTLAYAIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 L A+N R + AL + PTRELAVQV L A + A+ +GG ++ Sbjct: 61 IERL-AKNKRVA-----QALVLVPTRELAVQVNSVLSTFAAPRRLTTALLVGGRRYEKQI 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ GA I++GTPGR+ DH+ L + ++ VLDEAD+MLD GF +IE IL++SP+ Sbjct: 115 SALRYGAQIIIGTPGRIKDHLEQGNLVLRDIRICVLDEADQMLDSGFGPEIEQILETSPE 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+M +FSAT+ I L + Y KD V+V I E S I+ V + A+ + Sbjct: 175 DRQMALFSATMPTWIAKLQEKYLKDPVKVTITPEAGVQSTIEQIVYQVPRGKKVEALCTL 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L +++F T+ V R + L+ F V G+ SQ+ R + L R G+ ++ Sbjct: 235 LASTQGDISLIFGRTKMGVERLGEQLSNLGFAVGTFHGDKSQRAREDVLMAFRRGQVQML 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RR 355 +ATDVAARG+D+ + VI+ EL + E HR GRTGR GR G +V ++P +M RR Sbjct: 295 LATDVAARGLDIRGITQVINYELPDSDELFTHRIGRTGRMGRYGKAVTLLVPSDMSKWRR 354 Query: 356 AERLFREA---------NVSVVWEPAPSVEAIRERDAQRIL 387 R F + + + + P E +ERD++++L Sbjct: 355 MSRSFGQPVAVQKMVLNDEAALARPMVMSEGKQERDSEQVL 395 >gi|156389591|ref|XP_001635074.1| predicted protein [Nematostella vectensis] gi|156222164|gb|EDO43011.1| predicted protein [Nematostella vectensis] Length = 436 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 196/346 (56%), Gaps = 8/346 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q + P L+ +D + A+TGSGKT AF L + L +D + A+ + PT Sbjct: 31 TEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLC--DDPY----GIFAVVLTPT 84 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK- 142 RELA Q+ + + L G+ AV +GG+ + ++ L N H+V+ TPGRL DHI+ Sbjct: 85 RELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLANKPHVVIATPGRLADHIKSTD 144 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 LN+ ++ +VLDEAD +LD F DD++ I D+ P+KR+ L+FSAT++ + L K Sbjct: 145 TLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLLFSATLTDTMGELQKMSGS 204 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAIVFCSTRASVSRFT 261 + S+ +++D R +L RD +V++LR + ++ IVF T + Sbjct: 205 QPFSYEVQSDIATVAELDQRYLLTPAHVRDCYLVHLLRENDDNQSVIVFTHTCKNCQVLV 264 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 + + V L LSQ ER AL + G ++ +ATDVA+RG+D+P +ELV+++ + Sbjct: 265 SMFHKLGLTCVGLHSLLSQGERLAALARFKSGTIKILVATDVASRGLDIPQVELVVNSNI 324 Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 ++P++ +HR GRT RAGR GM++ ++ Q R +++ + N + Sbjct: 325 PADPKDYIHRVGRTARAGRGGMAISMVTQYDIDRVKKIEEKINTKL 370 >gi|49477717|ref|YP_036595.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118477863|ref|YP_895014.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|196033783|ref|ZP_03101194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|196043209|ref|ZP_03110447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|225864437|ref|YP_002749815.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|228927528|ref|ZP_04090581.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946079|ref|ZP_04108415.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122021|ref|ZP_04251237.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201] gi|49329273|gb|AAT59919.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118417088|gb|ABK85507.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus thuringiensis str. Al Hakam] gi|195993463|gb|EDX57420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus W] gi|196025518|gb|EDX64187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB108] gi|225786741|gb|ACO26958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus 03BB102] gi|228661364|gb|EEL16988.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201] gi|228813592|gb|EEM59877.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832136|gb|EEM77720.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 450 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|221198351|ref|ZP_03571397.1| dead/deah box helicase [Burkholderia multivorans CGD2M] gi|221208290|ref|ZP_03581294.1| dead/deah box helicase [Burkholderia multivorans CGD2] gi|221171938|gb|EEE04381.1| dead/deah box helicase [Burkholderia multivorans CGD2] gi|221182283|gb|EEE14684.1| dead/deah box helicase [Burkholderia multivorans CGD2M] Length = 506 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 140/400 (35%), Positives = 210/400 (52%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 39 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 97 Query: 68 --------------------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L+ L Sbjct: 98 AQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 157 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 158 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF +DIE I++++P+ R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 269 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ FQ AL G+ Sbjct: 270 IAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGD 329 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 330 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 389 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371 AGR G++V ++ Q +R ER R NV +EP Sbjct: 390 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 429 >gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora] gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora] Length = 631 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 122/343 (35%), Positives = 194/343 (56%), Gaps = 10/343 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q A + + +D++ AQTG+GKT AF L L + R Sbjct: 72 ILQAVTEKGYKQPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPLLA-------RMD 124 Query: 71 PAS-APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P +P L +APTRELAVQV A + V GG + L+ G +V Sbjct: 125 PDQRSPQVLVLAPTRELAVQVADSFSTYAAHLPHIRVLPVYGGADFRDQINRLKRGIQVV 184 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+R L++S L+ +VLDEADEML +GF DD+E+I++ PK+R++++FSAT Sbjct: 185 VGTPGRVMDHMRQGTLDLSGLRVLVLDEADEMLRMGFIDDVEWIIEQLPKQRQVVLFSAT 244 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I ++ NY + + I + S I R ++V + A+ +L + I Sbjct: 245 MPTEIRRISLNYLNNPAEITIRQKGSDASRIRQRYLMVHAPHKLEALNRVLEAETGEGVI 304 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+A + L V L+G+++Q +R ++ +R G + +ATDVAARG+ Sbjct: 305 IFGRTKAITVTIAESLELTGHDVAVLNGDVAQSQRERTIERLRKGSINILVATDVAARGL 364 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 D+ + LVI+ ++ + E +HR GRTGRAGR G ++ F+ P+ Sbjct: 365 DVDRVSLVINYDIPFDSEAYVHRIGRTGRAGRTGDAILFLTPR 407 >gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan troglodytes] Length = 737 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 Q 350 + Sbjct: 495 R 495 >gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan troglodytes] Length = 643 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 221/398 (55%), Gaps = 26/398 (6%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 QN------MQRRAERLFREANVSVVWE--PAPSVEAIR 379 + ++++A F+ V + + S++AIR Sbjct: 495 RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIR 532 >gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 652 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 148/516 (28%), Positives = 258/516 (50%), Gaps = 27/516 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY + +Q A + L +DV+ AQTG+GKT AF L S + PA+ Sbjct: 58 ALKDVGYEKPSPIQAATIPVLLEGRDVVGLAQTGTGKTAAFALPALSRMAN-----LPAT 112 Query: 74 APLA-LAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L +APTRELA+QV A V GG + + L+ GA +VVGT Sbjct: 113 KDTQILVLAPTRELALQVAEAFSSYAAHMDNFSVLPVYGGSAYGPQLAGLRRGAQVVVGT 172 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S+L+ +VLDEADEML +GF DD+E IL +P+ +++ +FSAT+ Sbjct: 173 PGRVIDHLSKGSLDLSNLQYLVLDEADEMLRMGFADDVEQILAETPEDKQVALFSATMPG 232 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +AK Y + +++ ++ + R + V + +A+ IL I F Sbjct: 233 QIRRIAKKYLNNPAEISVKAKTTTGENTRQRYLQVMGPHKLDAMTRILEVEDYDGVIAFV 292 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L ++ A++G++ QQ+R ++ +R G V +ATDVAARG+D+ Sbjct: 293 RTKMATEELADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLVATDVAARGLDVE 352 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368 + LV++ ++ + E+ +HR GRTGRAGR G ++ F+ P+ + R E+ R+ + Sbjct: 353 RISLVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEKATRQPVEQMH 412 Query: 369 WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427 A ++ +R + A +I + ++ E + L++ ++ E Sbjct: 413 LPSADTINNLRLSKFADQITE------TLGSQELSVFRELISTYEQEHDVTAAEIAAALA 466 Query: 428 LCAP-------EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 A +++ R+R +D F G +R +G++ + ++VG +Q+ Sbjct: 467 YMAQGGESLLVKDLPAAPEYQKRERAKD---GFGSRGPTRTLTEGNATYRIAVGRRQRVM 523 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 ++ + G++ IG I ++ D T VE+ A+ Sbjct: 524 PGSIVGAIANEGGLSSSQIGGIDIRADHTLVELPAE 559 >gi|109089503|ref|XP_001111043.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Macaca mulatta] gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix jacchus] Length = 737 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 Q 350 + Sbjct: 495 R 495 >gi|332098054|gb|EGJ03027.1| ATP-independent RNA helicase dbpA [Shigella dysenteriae 155-74] Length = 432 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 199/365 (54%), Gaps = 12/365 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ A L L KDV V A+TGSGKT AFGL L + A + AL + P Sbjct: 1 MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL DH++ Sbjct: 55 TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI ++ Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 L E ++L G+L Q++R L +G RV +ATDVAARG+D+ LELV++ E Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDIKSLELVVNFE 292 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 L+ +PE +HR GRT RAG G+++ F P+ Q RA + +++ W+ P +I Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQITLNWQTPPVNSSIV 351 Query: 380 ERDAQ 384 +A+ Sbjct: 352 PLEAE 356 >gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus] Length = 734 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 16/348 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q P KD++ A+TG+GKT +F + L L + + + Sbjct: 149 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV ++ + + K + VA GG S + ++NG I+VGTPGR Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGR 266 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189 + DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K + L+FSAT Sbjct: 267 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 326 Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y K +V++ + Q + +++ A+ S R I ++L+ Y G++ Sbjct: 327 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 386 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+FC T+ +V+ + H+ Q L G+++Q +R L+ R+G +V +AT+V Sbjct: 387 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 444 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ V F P+ Sbjct: 445 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492 >gi|153801095|ref|ZP_01955681.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3] gi|124123328|gb|EAY42071.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3] Length = 460 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 210/366 (57%), Gaps = 10/366 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ L G+ +T +Q L L+ +DV+ +TGSGKT AFGL + S L + Sbjct: 13 PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA QV ++ L A + V GG+ + + L++GAH Sbjct: 72 RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ +++S L +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT +I +A++ +A+ + + + + S Y + + RD A+ +L +H + Sbjct: 186 ATYPTSIEQIAQSVTHNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++VFC+T+ V L + F V+ L G++ Q+ER AL + + +ATDVAAR Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ +L+ V + +LS +PE +HR GRTGRAG KG++ N R ++ +++ Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365 Query: 367 VVWEPA 372 + EP+ Sbjct: 366 I--EPS 369 >gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1] Length = 564 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 64 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYESQIDALKAGVD 183 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH++ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407 >gi|183600372|ref|ZP_02961865.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827] gi|188020163|gb|EDU58203.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827] Length = 622 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 161/556 (28%), Positives = 268/556 (48%), Gaps = 40/556 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ GY + +Q+ + + DVL AQTGSGKT AF L L + + Sbjct: 21 ALNDLGYEKPSPIQKQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLLHNIDPD------LK 74 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AP L +APTRELAVQV + ++ + V V GG + R L+ G +VVGTP Sbjct: 75 APQILVLAPTRELAVQVAEAMGDFSKHMSRVNVVALYGGQRYDVQLRALRQGPQVVVGTP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ L++S LK +VLDEADEML +GF +D+E I+ P + + +FSAT+ Sbjct: 135 GRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEP 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I + + + K+ + I + DI V ++ A+V L AI+F Sbjct: 195 IRRITRRFMKEPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + + AL+G+++Q R L+ ++DGR + IATDVAARG+D+ Sbjct: 255 TKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVDR 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + LV++ ++ + E+ +HR GRTGRAGR G ++ + +R + R +++ Sbjct: 315 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVEL 374 Query: 373 PSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLR 422 P + + ER A++I Q +S D+ + LL K P E +AA L+ Sbjct: 375 PDSQLLSERRQAKFAEKIQQQ---FESSDLDQYR---ALLKKLSPSEDVDMETLAAALLK 428 Query: 423 I---HRAGLCAP----------EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469 + RA + P + + F R + G R + + Sbjct: 429 MAQGERALILPPDAPRRPRREFNDRDDRRRDRNGNGFDRAERGDRSGRRERRDVGDMEMY 488 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525 + VG E R ++ + + I+ + IG I++ + +E+ + + L R Sbjct: 489 RIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLFGSHSTIELPKGMPTEVLTHLSRAR 548 Query: 526 KLDKGIQLKYLGGEKP 541 L+K +Q++ +G +P Sbjct: 549 ILNKPMQMQLIGDAQP 564 >gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo sapiens] Length = 448 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 192/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 24 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 83 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 84 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 137 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL +P+ R+ +F Sbjct: 138 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPRDRKTFLF 197 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 198 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 257 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 258 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 317 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 318 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 362 >gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter aquaeolei VT8] gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8] Length = 443 Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 182/335 (54%), Gaps = 3/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A +++GY + +Q+ + L KDV+ +AQTG+GKT F L L L AEN R Sbjct: 15 ATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLQRL-AENPRT--GK 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV + AV GGV ++ + L+ G ++V TPG Sbjct: 72 GPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQMMKLRKGLDVLVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + + ++ +VLDEAD MLD+GF DI IL P KR+ L+FSAT S I Sbjct: 132 RLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATFSNEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLA+ + V+V +A+ N + V S + + ++R + +VF T Sbjct: 192 RTLAQGLLDNPVQVEVAARNTTAEKVKQSVYPVDQSQKTALLSKLVRDNAWDQVLVFTRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R T+ L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ L Sbjct: 252 KHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATDIAARGLDIKQL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G ++ ++ Sbjct: 312 PQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLV 346 >gi|315606927|ref|ZP_07881933.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574] gi|315251308|gb|EFU31291.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574] Length = 375 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 193/347 (55%), Gaps = 5/347 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 NI + I +AL + Y T +Q+ + L +D+L AQTG+GKT AF + + L Sbjct: 7 NISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPIIQQLAKS 66 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 A+++R A L + PTRELA+Q+ + T + V GGVS + + ++L+ Sbjct: 67 ADDNRRRDIKA---LILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELER 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I++ TPGRL D I + + H++ VLDEAD MLD+GF DI+ ++ PK+R+ L Sbjct: 124 GVDILIATPGRLLDLISQHIITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKRRQTL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I L+K+ RV +A + I+ R V + + +V++L+ G Sbjct: 184 LFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSVLKNDG 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++A+VF T+ R + L + A+ G SQ R AL + G+ RV +ATD+ Sbjct: 244 NRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIVATDI 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 AARGID+ +L++VI+ +L E +HR GRTGRAG G+++ Q Sbjct: 304 AARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQ 350 >gi|24372961|ref|NP_717003.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24347107|gb|AAN54448.1|AE015582_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 433 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 196/354 (55%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+S+ GY +T +Q+ + R +DVL SAQTG+GKT AF L + ++ Sbjct: 6 FSFCPEIL-RAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 EN + S L + PTRELA QV +E V GGV V + + L+ Sbjct: 65 -ENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA I+V TPGRL +H+ L++S + +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA ++ + S ++Q++ D + +V ++ + G Sbjct: 184 LFSATFSSAVKKLANEMM---IKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG 240 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KN +VF +TR + K L + GE +Q R AL+ G+ RV +A Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+P LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354 >gi|189499873|ref|YP_001959343.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495314|gb|ACE03862.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides BS1] Length = 418 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/335 (37%), Positives = 184/335 (54%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL E GY + T +Q + L +D+L AQTG+GKT AF + L L A Sbjct: 12 ILQALREEGYSSPTPIQAQAIPMILEGRDLLGCAQTGTGKTAAFAIPLLQLLHARKTN-E 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA+Q+G TG+ V GGV+ + + L+ G IVV Sbjct: 71 KKKKIRALVVTPTRELAMQIGDSFSAYGRHTGLTNQVIFGGVNQNPQTASLRKGVDIVVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L++ ++ +VLDEAD MLD+GF DI IL + P+K++ L FSAT+ Sbjct: 131 TPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPQKKQSLFFSATMP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA K+ +V++ + I V +++ +V++L+ K A+VF Sbjct: 191 TEIVRLAGTILKNPAKVSVTPVSSTVDTIRQAVYFVDKGNKNRLLVHLLKGEEIKTALVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K L +H + A+ G Q R AL+ ++ RV +ATD+AARGID+ Sbjct: 251 TRTKHGADKVVKFLQKHAVRAEAIHGNKGQGARQRALKNFKEQTTRVLVATDIAARGIDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DLE VI+ ++S+ E +HR GRTGRAG KG ++ Sbjct: 311 DDLEHVINFDMSNVAETYVHRIGRTGRAGAKGTAL 345 >gi|324006198|gb|EGB75417.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2] Length = 432 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 199/365 (54%), Gaps = 12/365 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ A L L KDV V A+TGSGKT AFGL L + + F L + P Sbjct: 1 MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DVSLFQTQ----GLVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL DH++ Sbjct: 55 TRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI ++ Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ LELV++ E Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 L+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ +I Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIV 351 Query: 380 ERDAQ 384 +A+ Sbjct: 352 PLEAE 356 >gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803] gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803] Length = 606 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 203/375 (54%), Gaps = 7/375 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L +GY + +Q+A + +D++ AQTG+GKT AF L L L ++ Sbjct: 70 KTLDAKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLDGRSN----- 124 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELA+QV + + + V GG + L+ G +VVGT Sbjct: 125 -TPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHALKRGVDVVVGT 183 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+R L+ + L+++VLDEADEML +GF DD+E+ILD P++R++++FSAT+ Sbjct: 184 PGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPN 243 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+K Y ++ + I +++R+ I R++ + + + A+ +L + I+F Sbjct: 244 EIRRLSKRYLREPAEITIKTKDREAKRIRQRSITLQNAHKIEALNRVLEAVTGEGVIIFA 303 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A + L V L+G++ Q +R + +R G + +ATDVAARG+D+ Sbjct: 304 RTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVATDVAARGLDVD 363 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + LVI+ ++ + E +HR GRTGRAGR G ++ + +R L R N S+ Sbjct: 364 RIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLERAVNQSIEPMD 423 Query: 372 APSVEAIRERDAQRI 386 PS I + R+ Sbjct: 424 IPSNAEINQSRLDRL 438 >gi|78777961|ref|YP_394276.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251] gi|78498501|gb|ABB45041.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM 1251] Length = 540 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 195/366 (53%), Gaps = 7/366 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++ + G+ + +Q A + L +D++ A TG+GKT AFGL + + +P Sbjct: 28 SVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPALNNI-------NPND 80 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L I PTRELA QV EL G GG S +R+ +Q GA +VV TPG Sbjct: 81 GVGILVITPTRELATQVSDELFKYGRNIGARTVTVYGGSSYNRQIDLIQRGASVVVATPG 140 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D ++ L VVLDEADEMLD+GF DDI I P R+ L+FSAT+ I Sbjct: 141 RLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLLFSATMPKPI 200 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + ++I ++DI+ ++ S+RD+AI+ ++ + +IVFC T Sbjct: 201 KLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDAEACQKSIVFCRT 260 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 ++ V R + VL+ + L G++ Q++R ++ ++ +V +ATDVAARGI + ++ Sbjct: 261 KSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVATDVAARGIHVDNI 320 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 V + + +PE+ +HR GRTGRAG KG ++ ++ + +R+ + ++ P Sbjct: 321 SHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKTKVGTTMTHAFVP 380 Query: 374 SVEAIR 379 S +R Sbjct: 381 SKNDLR 386 >gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus] Length = 669 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 16/348 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q P KD++ A+TG+GKT +F + L L + + + Sbjct: 84 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 143 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV ++ + + K + VA GG S + ++NG I+VGTPGR Sbjct: 144 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGR 201 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189 + DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K + L+FSAT Sbjct: 202 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 261 Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y K +V++ + Q + +++ A+ S R I ++L+ Y G++ Sbjct: 262 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 321 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+FC T+ +V+ + H+ Q L G+++Q +R L+ R+G +V +AT+V Sbjct: 322 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 379 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ V F P+ Sbjct: 380 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 427 >gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1] Length = 560 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 60 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH++ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403 >gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1] gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1] gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1] gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1] Length = 560 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 60 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH++ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403 >gi|256785357|ref|ZP_05523788.1| helicase [Streptomyces lividans TK24] Length = 513 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 189/349 (54%), Gaps = 16/349 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G + +QE L L KDV+ A+TG+GKT+ FGL L + D R Sbjct: 49 EALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 108 Query: 69 FSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P S AP AL + PTREL QV +L V V GG + + L+ G Sbjct: 109 AAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKQGV 168 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGRL D K L++ H+K++VLDEADEMLDLGF D+E I++ P +R+ ++F Sbjct: 169 DVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKIINMLPARRQTMLF 228 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239 SAT+ A+ LA+ Y ++ S + + + + YRA + D+ + IL Sbjct: 229 SATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNM---DKPEMVARIL 285 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G A+VFC T+ + + L + F A+ G+L Q R AL+ R+G+ V + Sbjct: 286 QADGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 345 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ + VI+ + + LHR GRTGRAG KG ++ ++ Sbjct: 346 CTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLV 394 >gi|254283223|ref|ZP_04958191.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B] gi|219679426|gb|EED35775.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B] Length = 409 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 193/341 (56%), Gaps = 8/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---END 67 I ++E G+ + +Q IL L+ D + AQTG+GKT AF + + + LL E + Sbjct: 38 IMHGVAEAGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFNDLLCNPLEGE 97 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAH 126 RF + P A+ IAPTREL +Q+ + E L TG+ IGG ++ + + + Sbjct: 98 RF--LAEPRAVIIAPTRELVMQIAADAEDLGRHTGLNTVALIGGADYQKQLQKVSRRVTD 155 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184 ++V TPGRL D + + L + ++ +VLDEAD MLD+GF ++ I+ S+P+K R+ L+ Sbjct: 156 LIVATPGRLIDFVERRDLYLDRVETLVLDEADRMLDMGFIPQVKRIVRSTPRKEDRQTLL 215 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT +P I LA+ + D V + I ++ +D + LVA +R ++N+LR A Sbjct: 216 FSATFTPDIMNLARQWTFDPVTIEIEPDHVATDSVDQKVYLVASHERMRVLLNVLRSDEA 275 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF + R V + L + LSGE++Q +R+ L +DG V +ATDVA Sbjct: 276 TSVIVFANRRDQVRNVYEKLRKAGISCGILSGEVNQAKRTKTLAQFKDGTISVLVATDVA 335 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGI + + V++ L +PE+ +HR GRTGRAG G+S+ Sbjct: 336 GRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISI 376 >gi|209518020|ref|ZP_03266851.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] gi|209501524|gb|EEA01549.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] Length = 532 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 138/390 (35%), Positives = 203/390 (52%), Gaps = 38/390 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------- 63 AL+ GY + T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 50 ALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQKAQASQP 109 Query: 64 --------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108 R P + P L + PTRELA+QV G+ L+ L + Sbjct: 110 REPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 163 Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 +GGV+ ++ L I+V TPGRL DH+ +++S L+ +VLDEAD MLD+GF DD Sbjct: 164 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIDD 223 Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 I+ I+ +P R+ ++FSAT+ I +L KD R+ I Q ++I V Sbjct: 224 IDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVDD 283 Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 D +D + ++LR G AIVF +T+ + LA+ F+ AL G+L Q R+ + Sbjct: 284 RDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTI 343 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 + +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR G++V + Sbjct: 344 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGVAVSL 403 Query: 348 I---PQNMQRRAERLFR---EANVSVVWEP 371 + Q +R ER R NV +EP Sbjct: 404 VHHAEQGALKRIERFVRTPLPVNVVEGFEP 433 >gi|300972035|ref|ZP_07171795.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1] gi|300309257|gb|EFJ63777.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1] gi|324011376|gb|EGB80595.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1] Length = 432 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 196/359 (54%), Gaps = 12/359 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ A L L KDV V A+TGSGKT AFGL L + A + A + P Sbjct: 1 MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------AFVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL DH++ Sbjct: 55 TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI ++ Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 L E ++L G+L Q++R L +G ARV +ATDVAARG+D+ LELV++ E Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378 L+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ +I Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTLPANSSI 350 >gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes SK187] gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137] gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes SK187] gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137] gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1] gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1] gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1] gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4] gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1] gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1] gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2] gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1] gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2] gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2] gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3] Length = 560 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 60 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH++ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403 >gi|324506599|gb|ADY42814.1| Eukaryotic initiation factor 4A [Ascaris suum] gi|324507947|gb|ADY43360.1| Eukaryotic initiation factor 4A [Ascaris suum] Length = 415 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 186/335 (55%), Gaps = 8/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++DV+ AQ+G+GKT F +++ + D P AL Sbjct: 61 GFEKPSAIQQRAIVPCCMKRDVIAQAQSGTGKTATFSVSVLQNI----DESIPEVQ--AL 114 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV CIGG +V ++R L++G HIVVGTPGR+ D Sbjct: 115 VMAPTRELAQQIQKVMVSLGEYMGVKCHACIGGTNVRDDQRKLESGVHIVVGTPGRVNDM 174 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ + L S +K VLDEADEML GF+D I + P ++++ SAT+ + + Sbjct: 175 IQRQSLQTSAIKMFVLDEADEMLSRGFKDQIYEVFKCMPNDVQVVLLSATMPAEVLEVTN 234 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + E I + V + + + ++ + A++FC+TR V Sbjct: 235 RFMNDPVRILVKKEELTLEGIRQFYIDVEKEEWKFETLCDLYQTVNVTQAVIFCNTRRKV 294 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + + V + G++ Q ER ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 295 DYLANQMTKEKYTVSCMHGDMEQSERDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 354 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 + +L SN EN +HR GR+GR GRKG+++ FV Q+ Sbjct: 355 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQD 389 >gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] Length = 463 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 197/344 (57%), Gaps = 7/344 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY TSVQE + L D++VS+ TGSGKT AF L L+ + + +P Sbjct: 14 QAIATTGYTVPTSVQEQAIPAALAGADLMVSSHTGSGKTAAFTLPSLHRLI--DRKPAPG 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P L + PTRELA QV + ++ YA+ + A +GG + + L +VV Sbjct: 72 AGPRVLVLTPTRELAQQVEKAVKT-YARNLRYLNTACLVGGAPFFAQAKLLSRPVDVVVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ + L +S ++ +VLDEAD MLD+GF +DIE I+ ++P R+ L+FSAT+ Sbjct: 131 TPGRLIDHLNRRKLKLSDIEVLVLDEADRMLDMGFVEDIETIVAATPASRQTLLFSATLD 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIV 249 + LA+ ++ R+ IA+ ++I+ R ++ + ++ + ++L + A+V Sbjct: 191 GVVGNLARKMTRNPQRIEIAATVENRANIEQRLLMADNIVHKNRLLESLLGGDDLQQAVV 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +T+ + L E F AL G++ Q R+ L +R GR V +ATDVAARGID Sbjct: 251 FTATKRGAEEVSLNLQEKGFSAAALHGDMHQTARNRTLDKLRQGRIGVLVATDVAARGID 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + + VI+ + E+ +HR GRTGRAGR G+++ F P+ M Sbjct: 311 VAGISHVINFDAPRQVEDYVHRIGRTGRAGRDGIAITFSGPREM 354 >gi|115373430|ref|ZP_01460728.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1] gi|310822521|ref|YP_003954879.1| ATP-independent RNA helicase dbpa [Stigmatella aurantiaca DW4/3-1] gi|115369596|gb|EAU68533.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1] gi|309395593|gb|ADO73052.1| ATP-independent RNA helicase DbpA [Stigmatella aurantiaca DW4/3-1] Length = 459 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/319 (37%), Positives = 177/319 (55%), Gaps = 8/319 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+E G+ T +Q + L+ +D++ AQTGSGKT AF L L + R Sbjct: 14 QVLAELGFTTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLLEKVQPARRRLQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 AL + PTREL QV E+ L + G+ V V GG + + L GAHI VGT Sbjct: 72 ----ALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLSGGQPIRPQLDALGKGAHIAVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D + + L+ L VVLDEAD MLD+GFR+D+E IL + P R+ ++FSAT P Sbjct: 128 PGRVLDLLDREALDTGQLATVVLDEADRMLDMGFREDMERILGAVPPSRQTVLFSATFPP 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +++ +QK+ RV +A E DI ++ ++ ILR++ +AIVFC Sbjct: 188 TIEAMSRAFQKEPARVTVA-EAGVAPDIQQLCFTCGPHEKTQLLLRILRHYQPASAIVFC 246 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + +A+V+ T++L + L G+L Q +R + R+ RV +ATDVA RGID+ Sbjct: 247 NLKATVTELTQMLVDAGVSADGLQGDLEQSDRDRVMAKFRNHSTRVLVATDVAGRGIDVE 306 Query: 312 DLELVIHAELSSNPENLLH 330 L+ VI+ ++ S PE +H Sbjct: 307 ALDAVINFDVPSQPEPYVH 325 >gi|309776780|ref|ZP_07671754.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium 3_1_53] gi|308915528|gb|EFP61294.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium 3_1_53] Length = 438 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 196/341 (57%), Gaps = 7/341 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A++E+GY+ T +QE + L+ +D+L AQTG+GKT AF + L Sbjct: 7 NITEPILKAINEQGYLTPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTIQLLNRH 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124 R+ +L + PTRELA+Q+ + YAK TG+ AV GGV + R L+ G Sbjct: 67 EKRYI-----RSLIVTPTRELAIQIQENI-CAYAKHTGIRSAVIFGGVPQKPQERILKAG 120 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I+V TPGRL D I+ ++I ++ +LDEAD MLD+GF D++ ++ PKK++ L Sbjct: 121 VDILVATPGRLNDLIQQGIVDIGRIEIFILDEADRMLDMGFLPDVKRLIAKLPKKKQTLF 180 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LA++ K+ + + + ID V +++ ++ +L + Sbjct: 181 FSATMPKEIRALAESLLKNPISIEVTPAATTVEKIDQTLYYVDKANKKRLLLKLLNKNRV 240 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +NA+VF T+++ +R K L E + G SQ R AL ++G++RV +ATD+A Sbjct: 241 QNALVFTRTKSNANRLAKYLNEAGVAAGVIHGNKSQNARQQALLQFKEGKSRVLVATDIA 300 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ +L V + ++ + E +HR GRTGRAGR+G ++ Sbjct: 301 ARGIDVQELSHVFNYDIPNEAEVYVHRIGRTGRAGRQGTAI 341 >gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 539 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L+ +DV+ +AQTG+GKT F L L LL++ + Sbjct: 12 ILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE-LLSKGQKAQ 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A L + PTRELA QV +E + AV GGV ++ + L++G ++V Sbjct: 71 -AGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + + L+ +VLDEAD MLD+GF DI IL PK+R+ LMFSAT S Sbjct: 130 TPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V + + +++ H + +VF Sbjct: 190 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQHDWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L E + A+ G SQ R+ AL ++G+ RV +ATD+AARG+D+ Sbjct: 250 SRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 347 >gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans ATCC 17616] gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] Length = 505 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 140/400 (35%), Positives = 210/400 (52%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 39 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 97 Query: 68 --------------------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L+ L Sbjct: 98 AQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 157 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 158 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF +DIE I++++P+ R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 269 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ FQ AL G+ Sbjct: 270 IAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGD 329 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 330 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 389 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371 AGR G++V ++ Q +R ER R NV +EP Sbjct: 390 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 429 >gi|170724880|ref|YP_001758906.1| ATP-dependent RNA helicase RhlB [Shewanella woodyi ATCC 51908] gi|226739552|sp|B1KQF6|RHLB_SHEWM RecName: Full=ATP-dependent RNA helicase rhlB gi|169810227|gb|ACA84811.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 441 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 198/341 (58%), Gaps = 9/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66 I AL+E G+ T +Q L L++KD+ AQTG+GKT+AF +A L ST + E Sbjct: 20 IKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFDHLLSTPVPEG 79 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + P A+ +APTRELA+Q+ ++ L TG+ V + GG S +R+ L G Sbjct: 80 RQLN---QPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYDVQRKVLDKGVD 136 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184 I++GT GR+ D++R +N+S ++AVVLDEAD M DLGF DI F+ P K R ++ Sbjct: 137 ILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNML 196 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + LA ++ + +V IA + +I ++ ++ +++++ Sbjct: 197 FSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEEDWP 256 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF +T+ S L +V L+G++ Q++R L+ +G+ + +ATDVA Sbjct: 257 EKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEGKLDILVATDVA 316 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ + D+ V + +L + E+ +HR GRTGRAG+KG+SV Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSV 357 >gi|114048765|ref|YP_739315.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-7] gi|113890207|gb|ABI44258.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 479 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/336 (37%), Positives = 193/336 (57%), Gaps = 8/336 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E L+ GY +T +Q L L +DV+ +TGSGKT AFGL L + L + Sbjct: 31 PELL-ENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 89 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R L + PTRELA QV +E+ L V V GGV + + L++GAH Sbjct: 90 RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAH 143 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I++ SP++R+ L+FS Sbjct: 144 IIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFS 203 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I ++AK D V V +A + + + + L R A+ +L ++ Sbjct: 204 ATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPES 263 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VFC+T+ + L++ F V+AL G+L Q++R L + A V +ATDVAAR Sbjct: 264 AVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAAR 323 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 G+D+ L+ V + ++ + E +HR GRTGRAG KG Sbjct: 324 GLDIDALDAVFNYHVAFDTEVHIHRIGRTGRAGSKG 359 >gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC 6260] Length = 475 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 199/346 (57%), Gaps = 10/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+++ EA+ + Y T +Q + L KD++ AQTGSGKT AF + + +L Sbjct: 72 VPELM-EAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQ 130 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL +APTRELA Q+ + L + GV +GG+ + + RDL H Sbjct: 131 RPY------YALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPH 184 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGR+ DH+ KG ++ L+ +V+DEAD +LD+ F ++ IL P KR +F Sbjct: 185 ILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLF 244 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ I L + + V+V ++++ + ++ +LV+ ++ ++++L K Sbjct: 245 SATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMGK 304 Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T A R T +LA L F V L G+L+Q +R +L + G+A + IATDVA Sbjct: 305 SIIVFTRTCAHTQRST-LLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVA 363 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++VI+ ++ ++ + +HR GRT RAG+ G S+ ++ Q Sbjct: 364 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQ 409 >gi|323343014|ref|ZP_08083245.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463078|gb|EFY08273.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 487 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/353 (33%), Positives = 198/353 (56%), Gaps = 9/353 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F+N I I +++ GY T VQ+ ++ L K+++V +QTGSGKT +FG+ + Sbjct: 5 FKNYGIDDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIPICHQ 64 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + + + P L +APTRELA+Q+ +L L + V G S ++ + L Sbjct: 65 VEWKKRK------PQVLVLAPTRELAIQIQEDLFNLGRFKRLKVEALFGRSSFEKQAQRL 118 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + HI+V TPGRL DH+ + +++SH++ +V+DEADEM ++GF D I I++ PKK + Sbjct: 119 KEMTHILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQ 178 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSAT+ + L Y K+ ++I +E+R ID R +V D+ + ++L Sbjct: 179 KLLFSATMPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMALLESVLIT 238 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++I+FC+T+ V T + + +V L G + Q+ R+ L + G R +AT Sbjct: 239 ENPDSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVAT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 DVAARG+D+ D+ LV++ ++ N E+ HR GRT R + G +V F P M+ Sbjct: 299 DVAARGLDIDDVSLVVNFDVPENTESYTHRVGRTARVDKYGKAVTFASPYEMK 351 >gi|223634733|sp|A5DQF1|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3 gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC 6260] Length = 475 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 199/346 (57%), Gaps = 10/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+++ EA+ + Y T +Q + L KD++ AQTGSGKT AF + + +L Sbjct: 72 VPELM-EAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQ 130 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL +APTRELA Q+ + L + GV +GG+ + + RDL H Sbjct: 131 RPY------YALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPH 184 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGR+ DH+ KG ++ L+ +V+DEAD +LD+ F ++ IL P KR +F Sbjct: 185 ILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLF 244 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ I L + + V+V ++++ + ++ +LV+ ++ ++++L K Sbjct: 245 SATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMGK 304 Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T A R T +LA L F V L G+L+Q +R +L + G+A + IATDVA Sbjct: 305 SIIVFTRTCAHTQRST-LLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVA 363 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++VI+ ++ ++ + +HR GRT RAG+ G S+ ++ Q Sbjct: 364 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQ 409 >gi|149378257|ref|ZP_01895969.1| RNA helicase DbpA [Marinobacter algicola DG893] gi|149357454|gb|EDM45964.1| RNA helicase DbpA [Marinobacter algicola DG893] Length = 381 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 133/342 (38%), Positives = 182/342 (53%), Gaps = 10/342 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LS G+ N T +Q L L KD++ AQTGSGKT AFG+ L L RFS Sbjct: 17 LSRLGFENPTPIQSGALPHALAGKDLIAMAQTGSGKTAAFGIGLVERL--NPRRFSVQ-- 72 Query: 75 PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV + L E A+ V + GGV++ + L +GAHIVVGTPG Sbjct: 73 --GLVLCPTRELADQVAKSLRELARARDNVKILSLCGGVAIGPQIGSLSHGAHIVVGTPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+R L + L ++LDEAD MLD+GF+D +E I+ +P KR+ LMFSAT I Sbjct: 131 RIQDHLRKGTLKLDQLITLILDEADRMLDMGFQDAVEDIISQAPAKRQTLMFSATWPDNI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ YQ V I S+ + SDI R +A + A+ +L H + I FC+T Sbjct: 191 RKLSEQYQHAPADVRIESQAVE-SDITERFYEIAPGQQVQAVAALLSLHQPASCIAFCTT 249 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L F + L G+L Q++R + L + V +ATDVAARG+D+ L Sbjct: 250 KQQCDDVANELNGLGFAALPLHGDLEQRDRDSVLVRFGNQSCSVLVATDVAARGLDIKSL 309 Query: 314 ELVIHAELSSNPENLLHR-SGRTGRAGRKGMSVFVIPQNMQR 354 LV++ E + +PE HR R GR R G F P + Sbjct: 310 PLVVNVEPARDPEVHTHRIVDRPGRGARAG-GHFCTPSQAHK 350 >gi|269968866|ref|ZP_06182847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio alginolyticus 40B] gi|269826516|gb|EEZ80869.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio alginolyticus 40B] Length = 421 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/355 (35%), Positives = 190/355 (53%), Gaps = 8/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q + E L V T VQE + L K++L +AQTG+GKT AFGL + T+ + Sbjct: 14 IEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPIIQTV--QQ 71 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + P AL + PTRELA QV L A+T + + GG S+ ++R L+ GA Sbjct: 72 KKLN--GTPQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLEEGAD 129 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH+ +NIS +VLDEAD MLD+GF D++ I P ++++L+FS Sbjct: 130 ILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFS 189 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I T+A + V V ++ N + V + + ++ + Sbjct: 190 ATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGSRNWQQ 249 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ K L + V+++G+ SQ R AL + G+ R IATDVAAR Sbjct: 250 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 309 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 G+D+ +LE V++ ++ E+ +HR GRTGRAG+ G++V + M R E L + Sbjct: 310 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSL----MSRDEEYLLQ 360 >gi|313900312|ref|ZP_07833806.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2] gi|312954861|gb|EFR36535.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2] Length = 437 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 199/340 (58%), Gaps = 5/340 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I + I +A+ E+GYV+ T +QE + L+ +D+L AQTG+GKT AF + LL + Sbjct: 7 HITEPILKAVKEQGYVDPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTIQ-LLKK 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + S S L + PTRELA+Q+ + T + AV GGV + R L+ G Sbjct: 66 HYKQSIRS----LIVTPTRELAIQIQENITAYAQYTTIRSAVIFGGVPQKPQERILKAGV 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D I+ ++ISH++ +LDEAD MLD+GF D++ I+ PK+++ L F Sbjct: 122 DILVATPGRLNDLIQQGIIDISHIEIFILDEADRMLDMGFLPDVKRIIAKLPKRKQTLFF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA++ + V + + + ID V +++ ++ +L+ + + Sbjct: 182 SATMPSEIRKLAQSLLHEPVSIEVTPASTTVEKIDQSLYYVDKANKKRLLLKLLQKNRVQ 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 NA+VF T+++ +R K L E+ + G SQ R AL ++G++RV +ATD+AA Sbjct: 242 NALVFTRTKSNANRLAKYLNENGVTSGVIHGNKSQNARQQALLQFKEGKSRVLVATDIAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L V + ++ + E +HR GRTGRAGR+G ++ Sbjct: 302 RGIDVQELSHVFNFDIPNEAEVYVHRIGRTGRAGRQGCAI 341 >gi|268680158|ref|YP_003304589.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618189|gb|ACZ12554.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 436 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/387 (30%), Positives = 209/387 (54%), Gaps = 4/387 (1%) Query: 3 IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FE + + I +A+ E GY T VQ ++ L KDV+ +AQTG+GKT A+ L L Sbjct: 2 VFEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLLH 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L + + + + AL + PTRELA QVG ++ + A GGV + + Sbjct: 62 ILNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVPLSSAAIYGGVKFTPQAKK 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G I++ TPGRL +H++ +++S ++ VV DEAD +LD+GF D+++ +L PKKR Sbjct: 122 LDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKKR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FS +S ++ L++ K V V I ++ ++ LV + + ++ Sbjct: 182 QTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFMIG 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H +VF T+ S + L + + L G+ + +R+ A+ ++ RV +A Sbjct: 242 THNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVLVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TD+A+RG+D+ DL VI+ EL + E+ HR+GRTGRAG++G ++ ++ Q + + + + Sbjct: 302 TDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKFKEIE 361 Query: 361 REANVSVVWEPAPSVEAIR--ERDAQR 385 + ++ E P E E++A++ Sbjct: 362 KILKYTIKTEFYPGFETKEWVEKEAKK 388 >gi|167042639|gb|ABZ07361.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote HF4000_ANIW133K13] Length = 430 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/339 (35%), Positives = 192/339 (56%), Gaps = 10/339 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L + G+ +QE + L DV+ A TG+GKT AF L + L+ +N Sbjct: 13 ILDVLRDAGFTKPFPIQERAIPVLLDGNDVIGQAHTGTGKTAAFALPMIQ-LVVKNQGIQ 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + +APTRELA+Q+ E++ TG+ A GG S+ + L+ I+V Sbjct: 72 ------GIIMAPTRELALQITSEIKRFAKNTGITTATIYGGQSMGIQLDALRKKPEIIVA 125 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ + ++++K VVLDEAD MLD+GF +DIEFILD +P++R ++SAT+ Sbjct: 126 TPGRLIDHLKRGTIKLNNVKHVVLDEADIMLDMGFIEDIEFILDLTPEERTTSLWSATMP 185 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAIV 249 P I LA+ K R+ + S+ + ID +++ ++ +++ + HG IV Sbjct: 186 PEIIRLAETNMKSPKRILVDSDELSCAGIDQSFLIIKDREKSKYLLDFI--HGNIGQCIV 243 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FCST+ K+L + VV++ G++SQ R +++ R A + +ATDVAARGID Sbjct: 244 FCSTKIRTRDVAKLLYKSGESVVSVEGDMSQHRRESSMSKFRKSNANILVATDVAARGID 303 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P + LVI+ ++ + HR GRT RAG KG ++ ++ Sbjct: 304 IPTVALVINYDIPNRDMVYFHRIGRTARAGAKGRAITMV 342 >gi|149914630|ref|ZP_01903160.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp. AzwK-3b] gi|149811423|gb|EDM71258.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp. AzwK-3b] Length = 470 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 201/355 (56%), Gaps = 4/355 (1%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 + +FE +P + + L+ G T +Q + L +DV+ AQTG+GKT AFGL L Sbjct: 31 LNLFEEMGLPGPLVKKLALMGITEPTPIQTHAIPFALDSEDVMGLAQTGTGKTAAFGLPL 90 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + L+ E + +P A +L +APTRELA Q+ L L T + VA+ +GG S+ + Sbjct: 91 LAKLMEEPGKPAP-KAVRSLILAPTRELAGQIRDTLLPLVKDTPIKVALVVGGASIGAQI 149 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + +Q G ++V TPGRL D + + L++S + +VLDEAD+MLDLGF + I P Sbjct: 150 KRMQMGTDVLVATPGRLLDLLDRRALSLSDTRFLVLDEADQMLDLGFIHALRKIAGLLPS 209 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ ++FSAT+ + +A +Y RV ++ + + +A + + + +V + Sbjct: 210 TRQTMLFSATMPKQMEEIAGSYLTHPKRVQVSPPGKAADKVTQGVHFIAKAAKGDLLVEL 269 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L H + A+VF T+ + + L + + V A+ G SQ +R AL+ RDG RV Sbjct: 270 LDKHREELALVFARTKHGSDKLARKLEQAGYAVAAIHGNKSQGQRERALRAFRDGEVRVL 329 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +ATDVAARG+D+PD++ V + +L + PEN +HR GRT RAGR G +V F P M Sbjct: 330 VATDVAARGLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGRDGAAVAFCAPDEM 384 >gi|24375277|ref|NP_719320.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24350080|gb|AAN56764.1|AE015812_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 535 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 187/336 (55%), Gaps = 2/336 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+SE+GY + +Q + L KDV+ +AQTG+GKT F L L LLA+ + + + Sbjct: 14 KAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLAKGHK-AKS 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QVG +E + AV GGV ++ + L++G ++V TP Sbjct: 72 GQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D ++ + + L+ +VLDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 132 GRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFSDE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK V +++ N + + V + + ++ +++ + +VF Sbjct: 192 IRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQENWQQVLVFSR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R K L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 252 TKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQ 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 312 LPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLV 347 >gi|49475813|ref|YP_033854.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1] gi|49238621|emb|CAF27864.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1] Length = 460 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 192/339 (56%), Gaps = 5/339 (1%) Query: 26 VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 +QE + L+ D+L AQTGSGKT+AF L + S +LA D+ P +A AL +APTRE Sbjct: 33 IQEQAIPMMLKGHDILGIAQTGSGKTLAFSLPILSQILALGDKRFPKTA-RALILAPTRE 91 Query: 86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145 LAVQ+ + + T + + GGVS ++ + ++ G I++ TPGRL D IR K ++ Sbjct: 92 LAVQIDETIRAVAKGTHLSTCLIFGGVSRLKQIKRMEAGVDILIATPGRLRDLIREKYVD 151 Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205 +S + ++LDEAD MLD+GF DI I+ + R+ +FSAT+ ITTLAK D V Sbjct: 152 LSQSRFLILDEADRMLDMGFIHDIRHIVKLLHQVRQTALFSATMPKEITTLAKCLLNDPV 211 Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265 ++ ++ + ++I + V ++ N + +L + IVF T+ T+ LA Sbjct: 212 KIEVSPQGTTAAEIAQKLYCVPTCEKKNVLGKLLTNPDFVSVIVFTRTKYCADAVTRNLA 271 Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325 + V + G SQ R +AL+ R+ R+ +ATD+AARGID+P + VI+ +L Sbjct: 272 SRGYSVATIHGNKSQSARQSALKAFRERSVRILVATDIAARGIDIPGISHVINYDLPDEA 331 Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQ----RRAERLF 360 E+ +HR GRTGR G G ++ + + ++ R ERL Sbjct: 332 ESYVHRIGRTGRNGASGEALTLFDEGVEQMRLRAVERLI 370 >gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272] gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272] Length = 470 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/383 (33%), Positives = 198/383 (51%), Gaps = 27/383 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67 I +AL+ G +QE L+ L D++ A+TG+GKT+AF + + +A +D Sbjct: 4 IADALTGHGIETPFPIQEMTLSVALMGTDLIGQARTGTGKTLAFAIPVIQRTVAPHDPEY 63 Query: 68 -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL IAPTRELA+QV ++ G GGV + L++G Sbjct: 64 GELAAPGKPQALIIAPTRELAIQVAGDVAMASKLRGTRNLTIYGGVPYEGQLDALESGVD 123 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+GTPGR+ D + L++SH+K++VLDEADEMLDLGF D+E IL +P+ R+ ++FS Sbjct: 124 IVIGTPGRILDLANRRALDLSHVKSMVLDEADEMLDLGFLPDVEAILAKTPELRQTMLFS 183 Query: 187 ATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGA 244 AT+ AI LA+ + + + + +SE+ Q + V A D+ + IL+ Sbjct: 184 ATMPGAIVGLARKHMRHPMNIRAESSEDTQMVPATAQFVWQAHDMDKPEIVSRILQADDV 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F T+ + R L + F L G+++Q R ALQ RDG+ +ATDVA Sbjct: 244 ARVIIFTRTKRTAQRVADELVDRGFPASPLHGDMAQTAREKALQRFRDGKINTLVATDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV------------------- 345 ARGID+ ++ VI+ + + +HR GRTGRAG G++V Sbjct: 304 ARGIDVANISHVINYNCPEDDKTYVHRIGRTGRAGASGIAVTFVDWADLHRWKMINTALG 363 Query: 346 --FVIPQNMQRRAERLFREANVS 366 F PQ ++ LF + +S Sbjct: 364 LPFAEPQETYSSSDHLFHDLGIS 386 >gi|206974096|ref|ZP_03235014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|217959967|ref|YP_002338523.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|229139159|ref|ZP_04267734.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26] gi|206748252|gb|EDZ59641.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus H3081.97] gi|217065592|gb|ACJ79842.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus AH187] gi|228644218|gb|EEL00475.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26] Length = 454 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + + E Sbjct: 12 ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 71 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + V + SE + I+ R + + +A+ ++ Sbjct: 186 SATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|73952797|ref|XP_860793.1| PREDICTED: similar to nucleolar protein GU2 isoform 3 [Canis familiaris] gi|73952799|ref|XP_860823.1| PREDICTED: similar to nucleolar protein GU2 isoform 4 [Canis familiaris] gi|73952805|ref|XP_860916.1| PREDICTED: similar to nucleolar protein GU2 isoform 6 [Canis familiaris] Length = 673 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 75 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 134 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 135 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 192 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 193 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 252 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 253 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 312 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 313 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 370 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 371 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 430 Query: 350 Q 350 + Sbjct: 431 R 431 >gi|88859624|ref|ZP_01134264.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2] gi|88818641|gb|EAR28456.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2] Length = 455 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 134/378 (35%), Positives = 200/378 (52%), Gaps = 11/378 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY T +Q A + + +D++ +AQTG+GKT F L L L + Sbjct: 12 ILDAVAEQGYDTPTPIQLAAIPAIIEGRDMMAAAQTGTGKTAGFTLPLLERL----SKGK 67 Query: 71 PA--SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNGAHI 127 PA + AL + PTRELA QV +E LY K + + V GGV V+ + L+ G I Sbjct: 68 PAGNNQVRALVLTPTRELAAQVAESVE-LYGKNLKLTSFVVYGGVKVNPQMMRLRRGVDI 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + + L+ +VLDEAD MLD+GF DI+ IL P KR+ LMFSA Sbjct: 127 LVATPGRLLDLFNQRAVKFDQLEVLVLDEADRMLDMGFIHDIKKILKVLPAKRQNLMFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LAK D V V++A N + ++ R V + + + +++ + K Sbjct: 187 TFSDDIRNLAKGLINDPVEVSVAPANTTAATVEQRLHPVDKAKKPALLSHLILQNDWKQV 246 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ +R K L A+ G SQ R AL +DG+ RV +ATD+ ARG Sbjct: 247 LVFTRTKHGANRLVKQLEADKINAAAIHGNKSQSARMKALAGFKDGQVRVLVATDIVARG 306 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ L V++ +L + E+ +HR GRTGRAG G ++ + + + R N ++ Sbjct: 307 LDIDQLPQVVNFDLPNIAEDYVHRIGRTGRAGASGHAISFVTTEEAKELADIERLINATI 366 Query: 368 VWEPAPSVEA---IRERD 382 E P E ++E D Sbjct: 367 AREVVPGFEPSNQVKETD 384 >gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC 49726] gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC 49726] Length = 446 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/342 (37%), Positives = 188/342 (54%), Gaps = 5/342 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L++RG ++QE L L +D++ A+TG GKT FG+ L + + D Sbjct: 20 ICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDRVFDDADIAP 79 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA QV +L+ A V +A GG + + LQ G +V+G Sbjct: 80 LDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLASIYGGRPYEEQIKLLQRGVDVVIG 139 Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSAT 188 TPGRL D H RG L + H+ VVLDEADEMLDLGF IE IL++ + ++FSAT Sbjct: 140 TPGRLLDLHERGD-LVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAHQTMLFSAT 198 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKN 246 + AI L++ + V + SE + + R V D+ I +IL+ G Sbjct: 199 MPGAILNLSRQFMNKPVHIRAESEADEVTHETTRKVTFQAHRMDKVPVIAHILQAQGRGR 258 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +I+F T+ S ++ LAE F V A+ G+L Q+ R +LQ R G + +ATD+AAR Sbjct: 259 SIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDILVATDIAAR 318 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ D+ VI+ ++ +P +HR GRTGRAG G +V ++ Sbjct: 319 GIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLV 360 >gi|167625006|ref|YP_001675300.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167355028|gb|ABZ77641.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 474 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 141/381 (37%), Positives = 205/381 (53%), Gaps = 19/381 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ +A+S RGY LT VQ +L + KD++ AQTG+GKT AF L L + L+ Sbjct: 35 FDLHPKIL-DAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLLNRLI 93 Query: 64 AENDRFSPA-------SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGV 112 E + F+ S L + PTRELA+QV + ++L KT V GG Sbjct: 94 QEYNLFTEGDLEPEHQSKVKVLVLTPTRELAIQVADNISAYAQFLPFKTTAVY----GGS 149 Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172 +++ +R+ LQ G I+V TPGRL DHI GL++S++ +V+DEAD MLDLGF DIE + Sbjct: 150 NMNPQRKALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDIEKV 209 Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 + L FSAT S A+ TLA+ +N+A+ + S I LV + Sbjct: 210 KKLVAATHQTLFFSATYSEAVKTLAEKMLLAPEWINVAT-SATASLITQEVYLVDTRRKA 268 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 + ++ + + +VF STR S L + GE +Q R+ AL + Sbjct: 269 ELLSELIGRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALDEFKS 328 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 G+ RV +ATDVAARG+D+ L LVI+ EL E+ +HR GRTGRAG G ++ FV PQ+ Sbjct: 329 GKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVSPQD 388 Query: 352 MQRRAE-RLFREANVSVVWEP 371 + E L E + + P Sbjct: 389 REMLQEIELLIEQTLPCITMP 409 >gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis] gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis] Length = 446 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 195/354 (55%), Gaps = 10/354 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + EA + G+ + +Q + L+ KDV+ A+TGSGKT AF L + LL R Sbjct: 25 LCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDNPQRL- 83 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA Q+ + E L + GV AV +GG+ + + L HI++ Sbjct: 84 -----FALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPHIIIA 138 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ KG ++ LK +V+DEAD +L++ F +++ +L PK+RR +FSAT+ Sbjct: 139 TPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERRTFLFSATM 198 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + + L + + V+V +A++ + + + + +D +V +L + +V Sbjct: 199 TKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLFIPSKFKDCYLVYVLNELAGNSFMV 258 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T +V R T +L V L G++SQ +R AL + + +ATDVA+RG+D Sbjct: 259 FCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILVATDVASRGLD 318 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 +P +++VI+ ++ ++ ++ +HR GRT RAGR G SV + Q + +R E L Sbjct: 319 IPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIEHLI 372 >gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM 20712] Length = 417 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 122/376 (32%), Positives = 201/376 (53%), Gaps = 12/376 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + + + +T VQE + L KD++ AQTG+GKT A+ L L S L+AE Sbjct: 7 NLDENVLQGIEAMNFQEMTPVQEQTIPVILEGKDIIGCAQTGTGKTAAYTLPLLSRLVAE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQ 122 + P + A+ + PTRELA Q+ + E + V GG ++++ L Sbjct: 67 GN---PDNHIRAVIMVPTRELAQQIDMQFEGFSYFLPISTTVVYGGGDGAGWDQQKKGLL 123 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 GA +V+ TPGRL HI G+++S + +LDEAD MLD+GF DDI I+ P KR+ Sbjct: 124 MGADVVIATPGRLLSHIANSGIDLSQVSYFILDEADRMLDMGFFDDIMQIVKQMPTKRQT 183 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRY 241 ++FSAT+ P I LAK KD +NIA + I ++ + + AI+ + Sbjct: 184 ILFSATLPPKIRQLAKQILKDPAEINIAISKPNEAII--QSAYICYETQKMAIIQELFSK 241 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 K I+F S++ V L V A+ +L Q++R + ++G+ + +AT Sbjct: 242 PNRKKTIIFSSSKQKVKDLAYSLKRMKLNVAAMHSDLEQEQREAVMLDFKNGKTDILVAT 301 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359 D+ ARGID+ D+ LVI+ ++ +PE+ +HR GRT RA G+++ + + Q + ++ Sbjct: 302 DIVARGIDIDDIGLVINYDVPHDPEDYIHRIGRTARANADGVAITFVCEPEQGKFHKIEE 361 Query: 360 FREANVSVVWEPAPSV 375 F E ++ + P P+V Sbjct: 362 FIEKDIYKIPLP-PTV 376 >gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus ED133] Length = 487 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 115/336 (34%), Positives = 186/336 (55%), Gaps = 9/336 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + +L Sbjct: 2 GFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ-------GVQSL 54 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA+QV +L GV V GG+ + R+ + L+ G IVVGTPGR+ DH Sbjct: 55 ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 114 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISPAITTLA 197 + + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ AI L Sbjct: 115 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 174 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + + K + + I+ +V ++ + N L H + AIVF T+ V Sbjct: 175 QQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRV 234 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ + V Sbjct: 235 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 294 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 295 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 330 >gi|229000239|ref|ZP_04159808.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17] gi|228759571|gb|EEM08548.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17] Length = 481 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 122/370 (32%), Positives = 195/370 (52%), Gaps = 16/370 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ Y T VQ ++ L +KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEMIEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + G R++ +L+ HIVVGTPG Sbjct: 73 -PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI ++ LK +V+DEADEML++GF D +E I+D P R ++FSAT+ + Sbjct: 132 RVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+ Y K + I + I++ + V ++ + + +I + I+FC T Sbjct: 192 ENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + + G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE-- 370 VI+ ++ E+ +HR+GRTGRAG G ++ FV P ER E + +E Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYE-----ERFLVEIEEYIGFEIQ 366 Query: 371 --PAPSVEAI 378 APS E + Sbjct: 367 KIEAPSKEEL 376 >gi|126734915|ref|ZP_01750661.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2] gi|126715470|gb|EBA12335.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2] Length = 435 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 186/339 (54%), Gaps = 2/339 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E+G + T +Q + + +DV+ AQTGSGKT AFGL + L+ + +P ++ Sbjct: 16 LKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGSGKTAAFGLPMIHALMKAGVKPNPKTS 75 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 L +APTRELA Q+ L + + VA+ +GG + + + L G ++V TPGR Sbjct: 76 -RGLILAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGIVAQTKRLAGGVDLLVATPGR 134 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D + + + + +VLDEAD+MLD+GF + I K R+ +MFSAT+ + Sbjct: 135 LIDLLDRRAVRLDETIYLVLDEADQMLDMGFIHALRRIAPLLAKDRQTMMFSATMPKLMG 194 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 LA Y DAVRV + + I+ VA + + + ++ +L H + AIVF T+ Sbjct: 195 ELAGTYLTDAVRVQVNPPGQAVKKINQSVHFVAQAAKTDLLIELLDKHRDELAIVFGRTK 254 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 + KVL + F ++ G SQ +R AL+ + G+ RV +ATDVAARG+D+PD+ Sbjct: 255 HGCEKLYKVLEKKGFAAASIHGNKSQGQRQRALEAFKSGKTRVLVATDVAARGLDIPDVR 314 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 V + +L + EN +HR GRT RAG G +V V P M Sbjct: 315 FVYNYDLPNVAENYVHRIGRTARAGADGSAVALVAPDEM 353 >gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] Length = 550 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L+ +DV+ +AQTG+GKT F L L LL++ + Sbjct: 23 ILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE-LLSKGQKAQ 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A L + PTRELA QV +E + AV GGV ++ + L++G ++V Sbjct: 82 -AGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGVDVLVA 140 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + + L+ +VLDEAD MLD+GF DI IL PK+R+ LMFSAT S Sbjct: 141 TPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 200 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V + + +++ H + +VF Sbjct: 201 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQHDWQQVLVF 260 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L E + A+ G SQ R+ AL ++G+ RV +ATD+AARG+D+ Sbjct: 261 SRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDI 320 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 321 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 358 >gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 642 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 203/372 (54%), Gaps = 13/372 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + GY + +Q A + + D+L AQTG+GKT AF L L S L A N Sbjct: 32 KALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSRLEAGNRNTQ-- 89 Query: 73 SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L +APTRELA+QV + + + V GG S + R L+ GA +VVGT Sbjct: 90 ----ILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRRGAQVVVGT 145 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D IR K L++S LKA+VLDEADEML +GF DD+++I++ P R++ +FSAT+ Sbjct: 146 PGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPAGRQVALFSATMPE 205 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A+ + K + IAS+ + I R V + +A+ +L + +VF Sbjct: 206 QIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVEPYEALLVFV 265 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + LA AL G++ Q+ R + +R G+ + IATDV ARG+D+ Sbjct: 266 RTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGLDVE 325 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370 + V++ ++ + E+ +HR GRTGRAGRKG ++ FV P+ +RR R A + E Sbjct: 326 RITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPR--ERRMLRAIEHATRQAI-E 382 Query: 371 P--APSVEAIRE 380 P PS E I + Sbjct: 383 PMKMPSTEDINQ 394 >gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1] gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1] Length = 644 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/377 (32%), Positives = 199/377 (52%), Gaps = 19/377 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ E GY + T +Q + P L +DVL AQTG+GKT +F L + + L R Sbjct: 22 VQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITMLARGRAR-- 79 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P +L + PTRELA QV + + A+ IGGVS + + + G +++ Sbjct: 80 -ARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQAIDKGVDVLIA 138 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH L ++ +K +V+DEAD MLD+GF DIE I P R+ L FSAT++ Sbjct: 139 TPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTLFFSATMA 198 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRY------ 241 P I + + + ++ + ++ + I+ R + RD ++LR Sbjct: 199 PEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDMLRAAITAEG 258 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +NAI+FC+ + V K L +H + G+L Q R L RDG + +A+ Sbjct: 259 DAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFRDGSITLLVAS 318 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360 DVAARG+D+P++ VI+ ++ S+ E+ +HR GRTGRAG+ G+++ +P + + + Sbjct: 319 DVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVPSDEK------Y 372 Query: 361 REANVSVVWEPAPSVEA 377 A ++ +P P EA Sbjct: 373 LGAIEGLIKQPIPRAEA 389 >gi|229100254|ref|ZP_04231145.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29] gi|229115941|ref|ZP_04245337.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3] gi|228667530|gb|EEL22976.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3] gi|228683149|gb|EEL37136.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29] Length = 450 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22] gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22] Length = 435 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 1/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A+ E GY T +Q + L +KDVL +AQTG+GKT F L L L N + Sbjct: 12 ILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQRLKDSNLK-D 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + AL + PTRELA QV + +E AV GGV ++ ++ L+ G I++ Sbjct: 71 KKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D I L++S ++ +VLDEAD MLD+GF +DI+ IL PK+R+ L+FSAT S Sbjct: 131 TPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQRQNLLFSATFS 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA K V V ++ N ++ V + +++++ + + +VF Sbjct: 191 NEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSWQQVLVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ ++ L + A+ G SQ R+ AL ++G+ RV +ATD+AARGID+ Sbjct: 251 TRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAARGIDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL + E+ +HR GRTGRAG G+++ ++ Sbjct: 311 EQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLV 348 >gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 454 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + + E Sbjct: 12 ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 71 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE + I+ R + + +A+ ++ Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|170747431|ref|YP_001753691.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170653953|gb|ACB23008.1| DEAD/DEAH box helicase domain protein [Methylobacterium radiotolerans JCM 2831] Length = 527 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 184/340 (54%), Gaps = 10/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T +Q + L +DVL AQTG+GKT AF L + + L EN R + A Sbjct: 15 AVEAAGYTEPTPIQAEAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTLL--ENGR-ARAR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVVENFDRYGTNHKLNVALIIGGVSFADQDAKLMRGTDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L ++ ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT+ P I Sbjct: 132 RLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAI 248 LA + + RV +A + I R LVA +A LR KN I Sbjct: 192 ERLADMFLHNPQRVEVARPASTATTITQR--LVATGAEGHAKRERLRGLIRGEEDLKNGI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ + V+ K L H F AL G++ Q+ R+ AL R+G + +A+DVAARG+ Sbjct: 250 IFCNRKRDVALLQKSLVSHGFDAAALHGDMDQRARTTALDGFRNGETALLVASDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+P + V + ++ +PE+ +HR GRTGRAGR G + ++ Sbjct: 310 DIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGTAYTLV 349 >gi|58336606|ref|YP_193191.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus NCFM] gi|227903163|ref|ZP_04020968.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus ATCC 4796] gi|58253923|gb|AAV42160.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus NCFM] gi|227869149|gb|EEJ76570.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus ATCC 4796] Length = 495 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 138/414 (33%), Positives = 216/414 (52%), Gaps = 12/414 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L KDV+ AQTG+GKT AFGL + + + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPILQIIDKKE------ 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131 A A+ I PTRELA+Q EL L V V GG + R+ R L++ I+VGT Sbjct: 68 KAIQAIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ +++ +K VVLDEADEMLD+GF DIE IL + + + L+FSAT+ Sbjct: 128 PGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRNQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + + V I ++ ID V S++ + + ++ G A+VF Sbjct: 188 PILRIGEKFMNNPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLAVVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R L+ R+G+ + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSVV 368 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + R E+L ++ + Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTKKKMSPL- 366 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422 P +A+R + Q Q ++S G + LL + + A FL+ Sbjct: 367 -RPPTDDQALRGQLKQAKAQIEDLINSDLGKYTQDASELLDNYSAVDLVAAFLK 419 >gi|332293226|ref|YP_004431835.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171312|gb|AEE20567.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 644 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/351 (34%), Positives = 206/351 (58%), Gaps = 12/351 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +A+++ G+ + +QE + P L ++D++ AQTG+GKT AFG L + EN + + Sbjct: 14 QAIADMGFETPSKIQEEAI-PQLLAEDRDMVALAQTGTGKTAAFGFPLLQNI-DENSKTT 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 L IAPTREL +Q+ E++ LY+K GV V GG ++ + R++ GA IV Sbjct: 72 QG-----LIIAPTRELCLQITNEMK-LYSKHMKGVRVVAVYGGANIQEQAREISRGAQIV 125 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGR+ D +R + ++I+ L VLDEADEML++GF +DI IL +P+ + +FSAT Sbjct: 126 VATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDKLTWLFSAT 185 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + ++ +AK + + + + + +N ++ + +V DR A+ + + ++ Sbjct: 186 MPREVSRIAKEFMVNPLEITVGHKNEGAKNVSHEYFVVHTRDRYQALKRLSDANPDIFSV 245 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ + + L E + AL G+LSQ +R ++ R+ + ++ +ATDVAARGI Sbjct: 246 IFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNRQIQMLVATDVAARGI 305 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 D+ D+ V++ +L E HRSGRTGRAG+ G S+ ++ ++ R+ ++L Sbjct: 306 DVDDITHVVNYQLPDEIETYTHRSGRTGRAGKTGTSLVIVTKSEMRKIKQL 356 >gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus] Length = 734 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 199/348 (57%), Gaps = 16/348 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q P KD++ A+TG+GKT +F + L L + + + Sbjct: 149 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV ++ + + K V A GG S + ++NG I+VGTPGR Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRKLNV--ACFYGGTSYQSQINQIRNGIDILVGTPGR 266 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189 + DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K + L+FSAT Sbjct: 267 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDSEDNPQTLLFSATC 326 Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y K +V++ + Q + +++ A+ S R I ++L+ Y G++ Sbjct: 327 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 386 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+FC T+ +V+ + H+ Q L G+++Q +R L+ R+G +V +AT+V Sbjct: 387 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 444 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ V F P+ Sbjct: 445 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492 >gi|260550927|ref|ZP_05825133.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624] gi|260406054|gb|EEW99540.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624] Length = 383 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 199/346 (57%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + RF P AL +APTRELA+Q+ + ++L + + + +GGV ++++ L Sbjct: 69 PVKEQRFR--GEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKKQLD 126 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +VA D+ + +IL Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L + ++V LSGE++Q +R L+ + G+ + I Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + VI+ L ++ +HR GRTGRAG +G+S+ Sbjct: 307 ATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSI 352 >gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940] gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940] Length = 442 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/341 (36%), Positives = 184/341 (53%), Gaps = 3/341 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+ RG V ++QE L L +D++ A+TG GKT+ FG+ + + + D Sbjct: 23 IVDALASRGIVRTFAIQELTLPIALGGQDLIGQARTGMGKTLGFGVPVLDRVFDDADIEE 82 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELAVQVG +L + +A GG + + L+ G ++VG Sbjct: 83 LDGTPRALIVVPTRELAVQVGEDLTLASQNLPLRLATIYGGRPYEEQIKLLEKGVDVIVG 142 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI 189 TPGRL D + L + H+ +VLDEADEMLDLGF DIE IL+ K + ++FSAT+ Sbjct: 143 TPGRLLDLAQQGHLQLDHVAILVLDEADEMLDLGFLPDIEKILELLHGNKHQTMLFSATM 202 Query: 190 SPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 I TLA+ + + + S EN+ H D+ I L+ G Sbjct: 203 PGPILTLARTFMNRPIHIRAESGDENQTHESTRKVTFQAHRMDKLAIISRALQAKGRGKT 262 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ S + LA F+V A+ G+L Q R +L R+G+ + +ATDVAARG Sbjct: 263 IIFARTKRSAAEVADELARRGFRVGAVHGDLGQAAREKSLNAFREGKVEILVATDVAARG 322 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ID+ D+ VI+ ++ +P +HR GRTGRAG G +V ++ Sbjct: 323 IDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLV 363 >gi|182415515|ref|YP_001820581.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae PB90-1] gi|177842729|gb|ACB76981.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1] Length = 594 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 199/375 (53%), Gaps = 10/375 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ A+ + G+ +Q A++ L +DV+ + TGSGKTVAF + + Sbjct: 13 PEIL-RAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPAL-------E 64 Query: 68 RFSPA-SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125 R P A L + PTRELAVQV E+ L K G++ GG S R+ R L G+ Sbjct: 65 RVDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAAGS 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+GTPGR+ DH+ L + LK VVLDEAD MLD+GFR+DIE IL + P R++L F Sbjct: 125 QVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLLFF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L K +D + I + + ++ V + A+ ++ H + Sbjct: 185 SATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFR 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVFCST+ V + L + V L G+LSQ +R + R IATDVAA Sbjct: 245 YGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+ DLE+V + +L ++ E+ HR GRTGRAG+ G + + + + + R A + Sbjct: 305 RGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWAKL 364 Query: 366 SVVWEPAPSVEAIRE 380 + PS++ + E Sbjct: 365 DLRRGRLPSLDEVEE 379 >gi|258645737|ref|ZP_05733206.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470] gi|260403106|gb|EEW96653.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470] Length = 424 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 202/356 (56%), Gaps = 11/356 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +AL ++G T +Q+A + + KD++ ++TG+GKT+A+ L L + + Sbjct: 13 LAQALYQQGIRFPTVIQQASIPAIFKGKDIIGRSETGTGKTLAYLLPLVQRVDVKK---- 68 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA Q+ L VA IGG ++ + + L+ HI++G Sbjct: 69 --GGTQVLIMTPTRELAKQIFDVLRPFAILMEADVADIIGGRTIENQIQKLKREPHIIIG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHIR + L++S +K VVLDEAD+ML GFR+DI+ ++D +PKKR++L+FSAT+ Sbjct: 127 TPGRLLDHIRRRSLDLSGVKTVVLDEADQMLAAGFREDIDALVDETPKKRQVLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P LA Y K AV ++A E S ++ R + + + +V L+ A+VF Sbjct: 187 PEAKKLAHKYMKSAVVADVA-EKAVASTVEQRVYETVKTHKFSLLVRHLKEINPYMAVVF 245 Query: 251 CSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 C+TR L E VV + G +SQ +R+ ++ R +V +A+D+AARG+D Sbjct: 246 CNTREGAHELAGRLQEETDLVVDEIHGNMSQGQRNQVIREFEKARTQVLVASDIAARGLD 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFRE 362 + + V + ++ N E +HR GRTGRAG +G+S+ + P++ + R+ E+ +E Sbjct: 306 VEGITHVFNYDIPRNLEYYIHRIGRTGRAGTQGVSITYATPEDILLLRKLEKAIKE 361 >gi|229173149|ref|ZP_04300699.1| ATP-dependent RNA helicase [Bacillus cereus MM3] gi|228610326|gb|EEK67598.1| ATP-dependent RNA helicase [Bacillus cereus MM3] Length = 446 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPKSSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|53804862|ref|YP_113487.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str. Bath] gi|53758623|gb|AAU92914.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus capsulatus str. Bath] Length = 453 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/340 (38%), Positives = 187/340 (55%), Gaps = 1/340 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + A+SE GYV+ T +Q + L D+L +AQTG+GKT F L + LL E Sbjct: 19 QPLLRAVSEAGYVHPTPIQAQAIPLLLAGGDLLAAAQTGTGKTAGFTLPILHRLL-EKQA 77 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P L +APTRELA QV +E + V GGV ++ + R L G I+ Sbjct: 78 PRRPRRPRCLILAPTRELAAQVLESVEGYGKYVPLKATVMFGGVGLNPQVRALAAGVDIL 137 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH +++S ++ VLDEAD MLD+GF DI IL PK+R+ ++FSAT Sbjct: 138 VATPGRLLDHCGQNTVDLSAVEIFVLDEADRMLDMGFIRDIRRILGLLPKQRQNMLFSAT 197 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I TLA + V +A N +D LVA + + + +++R H + + Sbjct: 198 FSDEIRTLADGLLNNPGYVEVARRNAASDLVDQTVHLVAQEHKRDLLTHLIRRHDWRQVL 257 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + LAE A+ G SQ R+ AL +DG V +ATD+AARG+ Sbjct: 258 VFTRTKHGANRLAEKLAEDGIPAAAIHGNKSQSARTRALADFKDGTVPVLVATDIAARGL 317 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ L V++ EL + PE+ +HR GRTGRAGR G +V ++ Sbjct: 318 DIDQLPHVVNFELPNVPEDYVHRIGRTGRAGRAGSAVSLV 357 >gi|229017793|ref|ZP_04174677.1| ATP-dependent RNA helicase [Bacillus cereus AH1273] gi|229024016|ref|ZP_04180493.1| ATP-dependent RNA helicase [Bacillus cereus AH1272] gi|228737285|gb|EEL87803.1| ATP-dependent RNA helicase [Bacillus cereus AH1272] gi|228743484|gb|EEL93600.1| ATP-dependent RNA helicase [Bacillus cereus AH1273] Length = 450 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPASKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974] gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974] Length = 530 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 138/393 (35%), Positives = 215/393 (54%), Gaps = 20/393 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ EA+ E GY + +Q + L +DV+ A TG+GKT AF L + S + + Sbjct: 18 PSVL-EAVREVGYETPSPIQAQTIPALLDGRDVVGLAATGTGKTAAFALPVLSRIDPKLR 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R P AL +APTRELA+QV +K V VCI GG + + + L GA Sbjct: 77 R------PQALVLAPTRELALQVSEAFSRYASKMPQVSVVCIYGGGAYPVQLQALGRGAQ 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L + L+ +VLDEADEML +GF++D+E +L ++ +++++ +FS Sbjct: 131 VVVGTPGRVVDHLERGTLKLGELRFLVLDEADEMLKMGFQEDVERVLGAAAEEKQVALFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ AI ++K Y + V V + + +I+ R LVA + + + IL Sbjct: 191 ATMPGAIRKISKTYLHNPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEPFSA 250 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + + L F L+G++ Q R + +R+G+ + +ATDVAAR Sbjct: 251 MIVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVSALREGKIDILVATDVAAR 310 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREA 363 G+D+ + V + + + E+ +HR GRTGRAGR G+S +FV P ++M ER R+ Sbjct: 311 GLDVERITHVFNYDAPHDTESYVHRIGRTGRAGRTGVSYLFVTPRERSMIGAIERATRQ- 369 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396 + P P+V + +A RI + F DSI Sbjct: 370 --PLAETPFPTVADV---NAGRIAK---FRDSI 394 >gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus AHT 1] gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus AHT 1] Length = 424 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 192/338 (56%), Gaps = 10/338 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+E G T VQ + L KD++ AQTG+GKT+AF L + + + Sbjct: 16 KTLAELGISVPTPVQTQAIPALLSGKDIVAQAQTGTGKTLAFLLPILEKVKVDKPFIQ-- 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA+Q+ EL L + G GG V R+ + L+ HIVVGTP Sbjct: 74 ----ALIITPTRELALQITAELNKLASTVGANSLAVYGGQDVERQIKKLKGAIHIVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+R ++ S ++ +VLDEAD+ML +GF +++ I+ + KR+ ++FSAT+ + Sbjct: 130 GRILDHMRRGTISFSGVQMLVLDEADQMLHMGFLPEVDQIIGQTSPKRQTMLFSATMPGS 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVF 250 I LAK Y K V + I S+ +I ++V+ +DR + + ++ + A++F Sbjct: 190 IRNLAKRYMKTPVDIKIESKKVTLDEIS--QLVVSTTDRAKQDTLFKLIDQYRPFLALIF 247 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ ++ + L EH + L G+LSQ +R ++ R ++ +ATDVAARG+D+ Sbjct: 248 CRTKRRAAKLNQALLEHGYSADELHGDLSQAKREQVMKRFRQAHIQLLVATDVAARGLDV 307 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V + ++ + E+ +HR GRTGRAG KG+++ ++ Sbjct: 308 EGITHVFNYDIPQDLESYIHRIGRTGRAGEKGLALTLV 345 >gi|83719456|ref|YP_442523.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] gi|83653281|gb|ABC37344.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] Length = 482 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 21 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 79 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 80 AQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 139 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 140 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 193 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 194 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 253 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 254 QTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 313 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 314 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 373 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 374 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 411 >gi|324326484|gb|ADY21744.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 436 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + + E Sbjct: 9 ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 68 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE + I+ R + + +A+ ++ Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 303 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 >gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens] Length = 711 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVAWFYGGTSYQSQINHI 256 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494 Query: 350 Q 350 + Sbjct: 495 R 495 >gi|187931712|ref|YP_001891696.1| ATP-dependent RNA helicase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712621|gb|ACD30918.1| ATP-dependent RNA helicase [Francisella tularensis subsp. mediasiatica FSC147] Length = 441 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 188/339 (55%), Gaps = 2/339 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I AL ++GY LT +Q + L+ DV+ SAQTG+GKT F L + LL + Sbjct: 11 LICSALEKKGYTKLTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ L + PTRELA Q+ +++ A T + AV GGVS++ + L+ GA I++ Sbjct: 69 AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGAEILI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L VLDEAD MLD+GF +D++ I + PKK + LMFSAT Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + V+ N I + + S++ NA++++++ +V Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AARGID Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L VI+ +LS+ E+ +HR GRTGRAG++G+++ +I Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLI 347 >gi|226330865|ref|ZP_03806383.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198] gi|225201660|gb|EEG84014.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198] Length = 475 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 127/379 (33%), Positives = 200/379 (52%), Gaps = 24/379 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q+ + P L KDVL SAQTG+GKT AF L + L + Sbjct: 16 AIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEKLSQSATKTKGRQ 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+ ++ + V GGVS++ + L+ G +++ TPG Sbjct: 76 PVKALILTPTRELAAQIAENVKAYSRYIPIRSLVVFGGVSINPQMMKLRGGVDVLIATPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D +++S ++ +VLDEAD MLD+GF DI +++ PKKR+ L+FSAT S I Sbjct: 136 RLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKRQNLLFSATFSKEI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 T LA + + V +++A +N +D LV + + +++ ++F T Sbjct: 196 TGLANSLLNNPVSISVAPKNSAAESVDQYVHLVDKKRKTELLSHLIGLENWPQVLIFTRT 255 Query: 254 RASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 + ++ LAEHL + A+ G SQ R+ AL +DG+ + +ATD+AARG+D Sbjct: 256 KHGANK----LAEHLNADGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----------IPQNMQRRAER 358 + L V++ EL E+ +HR GRTGRA G ++ + I + ++R R Sbjct: 312 IDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLADIERLLKREIPR 371 Query: 359 LFREANVSVVWEPAPSVEA 377 L E ++P PS++A Sbjct: 372 LALEG-----YDPDPSIKA 385 >gi|293609547|ref|ZP_06691849.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827999|gb|EFF86362.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122816|gb|ADY82339.1| ATP-dependent RNA helicase RhlB [Acinetobacter calcoaceticus PHEA-2] Length = 389 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 199/346 (57%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 15 NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 74 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + RF P AL +APTRELA+Q+ + ++L + + + +GGV ++++ L Sbjct: 75 PIQEQRFR--GEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKKQLD 132 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 133 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 192 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +VA D+ + +IL Sbjct: 193 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 252 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L + ++V LSGE++Q +R L+ + G+ + I Sbjct: 253 REEPIDKVMIFANRRDQVRRLYDHLKKDGYRVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 312 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + VI+ L ++ +HR GRTGRAG +G+S+ Sbjct: 313 ATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGSQGVSI 358 >gi|262373548|ref|ZP_06066826.1| DEAD/DEAH box helicase [Acinetobacter junii SH205] gi|262311301|gb|EEY92387.1| DEAD/DEAH box helicase [Acinetobacter junii SH205] Length = 642 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 195/345 (56%), Gaps = 9/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--- 65 + + +AL G+ + T VQE + L KD+LVS+QTGSGKT AF L + L + Sbjct: 12 ETLQQALEGLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALTGQETF 71 Query: 66 ---NDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ + L Sbjct: 72 VPFKERMKAITQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA ++V TPGRL D + + L + ++++++DEAD MLDLGF +D+E I + + + + Sbjct: 132 K-GAQVIVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFSEDLEAIGELAANRNQ 190 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240 LMFSAT + I LA+ D R+ I + + ++D+ + + + L Sbjct: 191 TLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHKKKLLTHWLS 250 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ +A Sbjct: 251 DESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAI 355 >gi|229079638|ref|ZP_04212172.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2] gi|228703680|gb|EEL56132.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2] Length = 454 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P S+ + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 65 EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|146076715|ref|XP_001462984.1| nucleolar RNA helicase II [Leishmania infantum JPCM5] Length = 629 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 150/443 (33%), Positives = 225/443 (50%), Gaps = 37/443 (8%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE P V+ +AL RG ++ VQ N +R DVLV A+TGSGKT+AFG+ + LL Sbjct: 91 FEMNPIVV-KALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLL 149 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 F+ P A+ PTRELA+QV L + G+VV GGV+ + R L++ Sbjct: 150 KLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLVVTALYGGVAYANQERVLRS 207 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179 G IVV TPGR D + L+ + LDEAD MLD+GF+DDIE +L ++ Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267 Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231 + L+FSAT+ + T + KD +++ + R S I + S+ Sbjct: 268 GAERPVHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326 Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 + + ++++ Y GA +VF +T+ + + L G++ Q++R + ++ Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 RD + V IATDVAARG+DLP ++LVI S+ + +HR+GRTGRAGRKG+ V + Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQ 444 Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD---------PLFLDSIQGDE 400 + ER+ R A + PAP+ E I + A+ +D LF+D Q E Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMD--QAAE 502 Query: 401 KKMVDVLLAKHDPEKIAAGFLRI 423 LL DP +I A L + Sbjct: 503 ------LLKDADPVEILASALAV 519 >gi|325923904|ref|ZP_08185503.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865] gi|325545614|gb|EGD16869.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865] Length = 458 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 140/413 (33%), Positives = 213/413 (51%), Gaps = 16/413 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P L+ DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + +VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT I TLA+ KD + + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLAREILKDPIEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG++G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKRGLALSLVASRETG 351 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R + L +D + D+ + D+L Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403 >gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene) [NC10 bacterium 'Dutch sediment'] Length = 479 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/339 (35%), Positives = 186/339 (54%), Gaps = 5/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ + T +Q + P L +DV+ SA TGSGKT AF L + L+ + P Sbjct: 14 KAVHNMGFKSPTPIQRVAVPPLLEGRDVMASAVTGSGKTAAFLLPILHCLMEK-----PR 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELA Q+ L L A T + A GGVS+ + + + G +++ TP Sbjct: 69 GTTRALVLAPTRELAAQISDHLRELAAHTPLKGAAVYGGVSMGPQEQAFRRGVDVLIATP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH + ++ ++ +VLDEAD MLD+GF DI IL PKKR+ L+FSAT+ Sbjct: 129 GRLLDHFQYPYARLAGIEHLVLDEADRMLDMGFLPDIRRILQHVPKKRQTLLFSATLPAP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA++ ++ V +NI + + I + A V + + +++ +K+ + F Sbjct: 189 IMELARDMLQNPVSLNIERKAAPAAGITHVAYPVPHELKSTLFLELVKNSASKHVLAFTR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R L +H + G SQ +R+ AL + GR RV +ATD+AARGID+ Sbjct: 249 TKHRANRLADFLEKHGVTCERIHGNRSQAQRTEALASFKRGRCRVLVATDIAARGIDVEA 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 L LV++ ++ PE+ +HR GRTGR G + ++ N Sbjct: 309 LGLVVNFDVPQLPEDYIHRVGRTGRVDATGDAYTLVSPN 347 >gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3] gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3] Length = 524 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 141/398 (35%), Positives = 208/398 (52%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-------LAS 60 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L L Sbjct: 47 PEIV-SALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 105 Query: 61 TLLAE-------------NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 T + R P + P L + PTRELA+QV G+ L L Sbjct: 106 TQAQQPRAPREPQSADRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 165 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 166 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 219 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDIE I+ ++P R+ ++FSAT+ I +L KD R+ I + ++I Sbjct: 220 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIVQKMEARTNIA 279 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ F+ AL G+L Sbjct: 280 QTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLP 339 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 340 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 399 Query: 340 RKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371 R G++V ++ Q +R ER R NV +EP Sbjct: 400 RSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 437 >gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396] gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396] Length = 453 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/338 (36%), Positives = 186/338 (55%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+SE+GY + + +Q + L KDV+ +AQTG+GKT AF L + L ++ DR Sbjct: 12 ILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPILERL-SKGDRAR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QVG + +K + V GGV ++ + L+ G ++V Sbjct: 71 SNQA-RALILTPTRELAAQVGECVSIYSSKLPLRSTVVFGGVKINPQMMRLRRGVDVIVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI ILD PK+R+ LMFSAT S Sbjct: 130 TPGRLLDLYNQNAVRFQDLEVLVLDEADRMLDMGFIHDIRKILDILPKRRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N + V + + ++R + A+VF Sbjct: 190 NDIRKLAKELVNNPVEISVSPPNTTAKTVKQWIHPVDKKQKSALLTQLIRDNNWDQALVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R T+ L A+ G+ SQ R+ AL + G ++ +ATD+AARGID+ Sbjct: 250 SRTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSVQILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L E+ +HR GRTGRAG +G +V ++ Sbjct: 310 DQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLV 347 >gi|111024195|ref|YP_707167.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1] gi|110823725|gb|ABG99009.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1] Length = 465 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 192/362 (53%), Gaps = 5/362 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P V+ AL G +Q A + L +DVL A TGSGKT+AFGL + L Sbjct: 20 GLPAVMTHALDRSGIGAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLVRLKGA 79 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P + + PTRELA+Q+ R L+ G+ VA +GG+ + R+ L G Sbjct: 80 ASR---RGFPRGIVLVPTRELALQIERALDEPALSVGLRVANVVGGIPIKRQVEILSRGV 136 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH+ +++ + + LDEAD M DLGF + ILD +P + L+F Sbjct: 137 DLLIATPGRLADHVAQGSVSLDDVTVLALDEADHMADLGFMPQVTTILDKTPADGQRLLF 196 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + TL + Y +D V + A S + + + V D+ + + +I G Sbjct: 197 SATLDGEVDTLVRRYLRDPVTHSTAPVTASVSTMRHHLLFVDRVDKKSVVAHIGSRVG-- 254 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ V R + L E AL G +Q R+ L+ +G V +ATDVAA Sbjct: 255 RTLMFVRTKYGVDRLAQQLHEAGISAGALHGGKAQNNRTRTLESFAEGTTPVLVATDVAA 314 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LV+H + ++P++ LHR+GRT RAG G+ V ++ ++ + E+L R+A + Sbjct: 315 RGIHVDDISLVVHVDPPADPKDYLHRAGRTARAGESGVVVTLVTEDERAEVEKLTRKAGI 374 Query: 366 SV 367 V Sbjct: 375 EV 376 >gi|253700068|ref|YP_003021257.1| DEAD/DEAH box helicase [Geobacter sp. M21] gi|251774918|gb|ACT17499.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21] Length = 490 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 195/348 (56%), Gaps = 4/348 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E IP + + + E G+ T +QE L L KDV AQTG+GKT F +++ Sbjct: 1 MKFTELKIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + LL++ + P AL +APTREL VQ+ ++ + L TG + GGV ++R Sbjct: 61 TKLLSQA-KTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRD 119 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178 L+ GA IV+GTPGRL D+++ K ++ ++A+V+DEAD M D+GF D+ FIL P Sbjct: 120 ALKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPY 179 Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 KR+ L+FSAT++ + LA + +V++ E ++ V+ ++ ++ Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKEKFPLLLG 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +LR G + ++F +T+ L + F +SG++ Q++R L +DG + Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLPI 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 IATDVA+RGI + + VI+ +L + E+ +HR GRT RAG +GM++ Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAI 347 >gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus H10] Length = 499 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 189/342 (55%), Gaps = 8/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L+ KDV+ AQTG+GKT AFGL + ++ + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQSIDKKE------ 67 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131 A A+ I PTRELA+Q EL L V V GG + R+ R L++ I+VGT Sbjct: 68 KAIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ +++ + VVLDEADEMLD+GF DIE IL ++ L+FSAT+ Sbjct: 128 PGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIQDIESILKYVKNCKQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + KD V I ++ ID V S++ + + ++ G A+VF Sbjct: 188 PILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R L+ R+G+ + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEI 349 >gi|312602490|ref|YP_004022335.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] gi|312169804|emb|CBW76816.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] Length = 630 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 214/418 (51%), Gaps = 49/418 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------- 58 P+++ AL+ GY T VQ+ + L +D+LVS+ TGSGKT AF L Sbjct: 140 PEIV-SALTAAGYQAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIERFAQMQK 198 Query: 59 ASTLLAEND-----------------RFSPASAPLALAIAPTRELAVQV-------GREL 94 A TL + R P + P L + PTRELA+QV G+ L Sbjct: 199 AGTLGQRANQPVHQAQRGDRGERRHRREQPVARPALLVLTPTRELAMQVTTAATTYGKHL 258 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 L + +GGV+ ++ L I+V TPGRL DH+ +++S L+ +VL Sbjct: 259 RRLRTVS------ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVL 312 Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214 DEAD MLD+GF +DIE I+D +P R+ L+FSAT+ + +LA+ + DA R+ I E Sbjct: 313 DEADRMLDMGFIEDIEAIIDRTPATRQTLLFSATLDGKVGSLAQRFLSDAERIEIRREPE 372 Query: 215 QHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273 ++I V + +D + ++L AIVF +T+ LAE F A Sbjct: 373 SRANIAQSVHYVDDRAHKDRLLTHLLADGALDQAIVFTATKNDADVIAARLAEDGFASAA 432 Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333 L G+L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR G Sbjct: 433 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 492 Query: 334 RTGRAGRKGMSVFVIPQ---NMQRRAERLFR---EANVSVVWEP--APSVEAIRERDA 383 RTGRAGR G++V ++ +R ER R NV +EP APS A R A Sbjct: 493 RTGRAGRSGIAVSLVHHAEVGTLKRIERFVRTPLPVNVIAGFEPKRAPSTRAPARRGA 550 >gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 [Oryctolagus cuniculus] Length = 455 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 432 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 200/354 (56%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+SE GY +T +Q+ + R +DVL SAQTG+GKT AF L + +L Sbjct: 6 FSFAPEIL-RAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQKML 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +N + S AL + PTRELA Q+ + + V +GGV + + L+ Sbjct: 65 -DNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDMKVVTVLGGVKMDSQATKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA I++ TPGRL +HI L++S++ +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDN--AIVNILR 240 +FSAT S A+ LA V+ NI + ++Q++ + V+ + R + ++ Sbjct: 184 LFSATFSTAVKQLANVMM---VKPNIIAADKQNTTAVTVSQVVYPVEQRRKRELLSELIG 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 K +VF +TR + + K L + GE +Q R AL+ ++G+ RV +A Sbjct: 241 KKNWKQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+ LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354 >gi|260910887|ref|ZP_05917530.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella sp. oral taxon 472 str. F0295] gi|260634995|gb|EEX53042.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella sp. oral taxon 472 str. F0295] Length = 611 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 116/311 (37%), Positives = 175/311 (56%), Gaps = 7/311 (2%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWL 97 DV+ AQTG+GKT A+G+ + + E AL ++PTREL +Q+ +L ++ Sbjct: 17 DVIALAQTGTGKTAAYGIPVLQKVNPEEKHTQ------ALILSPTRELCLQIADDLADFS 70 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 G+ V GG S+ + R L+ GA I+V TPGRL D ++ + ++ VVLDEA Sbjct: 71 KYVQGLHVVPVYGGASIEMQIRQLRKGAQIIVATPGRLIDLMKRGVAQLDNVNNVVLDEA 130 Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217 DEML++GF + I I + P R L+FSAT+S I +AKNY D + + S N Sbjct: 131 DEMLNMGFTESINAIFEGVPTDRNTLLFSATMSREIEKIAKNYLNDYKEIVVGSRNEGAE 190 Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 +++ +V D+ A+ ++ ++ AI+FC T+ L + AL G+ Sbjct: 191 KVNHIYYMVNAKDKYLALKRLVDFYPRIFAIIFCRTKIETQEIADKLIRDGYNAEALHGD 250 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 LSQQ+R +Q R+ + +ATDVAARG+D+ DL VI+ L + E+ HRSGRTGR Sbjct: 251 LSQQQRDLTMQKFRNHNVQFLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGR 310 Query: 338 AGRKGMSVFVI 348 AG+KG S+ +I Sbjct: 311 AGKKGTSISII 321 >gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila simulans] gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila ananassae] gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp. wRi] gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila ananassae] gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia endosymbiont of Drosophila simulans] gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp. wRi] Length = 402 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 134/397 (33%), Positives = 214/397 (53%), Gaps = 14/397 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + +AL + T +Q + L+ KD+L SAQTG+GKT+AF + L + LL E Sbjct: 3 LPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLLNEP 62 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125 + S AL I PTRELA QV E+ L ++ + VA+ IGG + R+ LQ Sbjct: 63 NTGS------ALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKP 116 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+GTPGR+ DHI K L ++ +VLDE D M D+GF IE I+ PK R+ LMF Sbjct: 117 QIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMF 176 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA+ Y R+++ E I V + S++ +V L Sbjct: 177 SATLPGDIVKLAEKYLNRPERISVDCEVTTSVKIKQEIVYASESEKYEKLVTQL-CQREG 235 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + I+F T+ + L + + +A+ G+L Q +R + R GR ++ +ATDVA+ Sbjct: 236 SIIIFVKTKRGADQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVAS 295 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+P ++ VI+ + + + +HR GRT RAG +G ++ FV PQ+ +R +E Sbjct: 296 RGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPVLADKEGE 355 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 ++ SV+ ++R+++++ + P L + G +K Sbjct: 356 LNFDC----SVQ-FKKRNSKKVFKRPSTLKTKYGRKK 387 >gi|296394809|ref|YP_003659693.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181956|gb|ADG98862.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM 44985] Length = 452 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 189/366 (51%), Gaps = 5/366 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +PQ I AL++ G +Q A L P L +DVL TGSGKT+ FGL + + L Sbjct: 10 GVPQPIVSALAKAGVTAPFPIQAAALPPALEGRDVLGRGPTGSGKTLTFGLPMLARL--A 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N P P L + PTRELA QV L L A G+ A +GG+S+ R+ +L G Sbjct: 68 NGASKP-RKPRGLVLVPTRELAAQVASALTPLAASVGLRTASVVGGLSMQRQIDELARGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH+ + + + LDEAD+M D+GF + ILD +PKK + L+F Sbjct: 127 DVLVATPGRLADHLAQGTVVLDEVSVTALDEADQMADMGFLPQVVKILDRTPKKGQRLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + Y + + A S +++ + V + + I G Sbjct: 187 SATLDGQVDKLVRRYLDNPATCSTAPAAASVSTMEHHMLFVDQEQKKLVVTEIAAREG-- 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ R TK L A+ G +Q R+ L+ + G V +AT+VAA Sbjct: 245 RTILFVHTKHGADRLTKRLRAVGVSAAAIHGGKAQNNRTRTLEAFKSGDVAVLVATNVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + ++LV+H + ++P++ LHR+GRT RAG G+ + ++ +R AE + R A V Sbjct: 305 RGVHIDGVDLVVHVDPPADPKDYLHRAGRTARAGESGVVITLVTPAERRDAEAMARAAGV 364 Query: 366 SVVWEP 371 V P Sbjct: 365 VVKGVP 370 >gi|257138731|ref|ZP_05586993.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] Length = 515 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 54 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 112 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 113 AQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 172 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 173 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 226 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 227 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 286 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 287 QTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 346 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 347 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 406 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 407 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 444 >gi|325916975|ref|ZP_08179217.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC 35937] gi|325536826|gb|EGD08580.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC 35937] Length = 458 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 141/413 (34%), Positives = 212/413 (51%), Gaps = 16/413 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P L+ DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + +VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT I TLA+ KD V + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLAREILKDPVEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPREAA 351 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R + L +D + D+ + D+L Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403 >gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium 3519-10] gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium 3519-10] Length = 417 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 180/335 (53%), Gaps = 3/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL E GY T +Q + L+ +D+L +AQTG+GKT AF + + L +N R + Sbjct: 12 IAKALQEEGYTQPTPIQAKAIPSILQGRDLLGTAQTGTGKTAAFAIPILQNLTEKNIRNN 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A L + PTRELA+Q+ + V GGV + L+ G I+V Sbjct: 72 QIKA---LILTPTRELAIQIEESFNAYGRHLRLRNLVVFGGVKQSGQEAALKKGVDILVA 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D I +++ +L+ VLDEAD MLD+GF D++ I+ P KR+ L FSAT Sbjct: 129 TPGRLLDFISQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPPKRQTLFFSATFP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I+ LA + + V+V +A + I + V ++ + +IL + + +VF Sbjct: 189 DEISKLANSMLTNPVKVEVAPVSATADTIKQKVYFVEKENKLELLTHILMNDISDSVLVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L H A+ G SQ +R NAL + G+ R+ +ATD+AARGID+ Sbjct: 249 SRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALNNFKSGKTRILVATDIAARGIDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +L+ V++ ELS E +HR GRTGRAG G S+ Sbjct: 309 DELKYVVNFELSDVSETYVHRIGRTGRAGADGSSI 343 >gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta ATCC 11568] gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta ATCC 11568] Length = 589 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/342 (37%), Positives = 181/342 (52%), Gaps = 4/342 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-A 72 AL+ GY T +Q + ++ KD+L AQTG+GKT AF L + L AEN R +P Sbjct: 18 ALAATGYEKPTPIQAKAIPDVMKGKDLLGIAQTGTGKTAAFALPILHRL-AEN-RVAPRP 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL ++PTRELA Q+G + A G VAV GGV + R LQ G ++V P Sbjct: 76 RTTRALILSPTRELATQIGDSFKQYGAHLGFRVAVIFGGVKYGAQERALQQGLDVLVAAP 135 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI+ K L++S + VLDEAD+MLDLGF I I+ P KR+ L FSAT+ Sbjct: 136 GRLLDHIQQKTLDLSTCEIFVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFFSATMPSE 195 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA KD V+V + + I + V + + + +VF Sbjct: 196 IGKLAGELLKDPVKVQVTPQATTVERIKQSVIWVEQGKKRALLTELFSDPAYTRCLVFTK 255 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + A+ G SQ +R AL+ ++G+ RV +ATD+AARGID+ Sbjct: 256 TKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRVLVATDIAARGIDVDK 315 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + V++ EL PE +HR GRT RAG+ G ++ FV M+ Sbjct: 316 VTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAGDEMK 357 >gi|300024067|ref|YP_003756678.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888] gi|299525888|gb|ADJ24357.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 635 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 189/337 (56%), Gaps = 1/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + AL++ GYV T +Q L P L +D+L A+TGSGKT F L L + ++N Sbjct: 13 EPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPLLQKIASQNSE 72 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 +P LAL +APTRELA+Q+ +E+ L + AV +GGVS + L+ G H++ Sbjct: 73 PAPKQV-LALVLAPTRELAIQIDQEVASLARNMRIRRAVVLGGVSKGPQINALKRGVHVL 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D I + ++S ++ +VLDEAD M D+GF DI+ I+ P+ RR +FSAT Sbjct: 132 VATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPEARRTALFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I A + K+ RV+++S++ ID + ++V +++ + + IL K I Sbjct: 192 MPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHTILADEACKRVI 251 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R + L A G +Q R AL G RV +ATD+AARGI Sbjct: 252 VFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRVLVATDIAARGI 311 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ ++ V++ ++ +PE +HR GRT R G G+++ Sbjct: 312 DVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAI 348 >gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514] gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514] Length = 412 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 177/336 (52%), Gaps = 6/336 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + + + GYV T +Q + L +DV+ SAQTG+GKT AF L + S L + Sbjct: 8 LSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPILSKLESHQ 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R P L + PTRELA QV + T + AV GGV R+ L+ G Sbjct: 68 PR------PRLLILEPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDALKAGVD 121 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH+ +K +VLDEAD MLD+GF D+ I+D P+ R +FS Sbjct: 122 IIIATPGRLLDHLERGTCKFDQIKYLVLDEADRMLDMGFLPDVRRIVDKCPRDRHTSLFS 181 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I TL K K+ + I + + + VA + + + +L + Sbjct: 182 ATVPPQIETLIKWAMKNPQTIEIGARRSPAETVKHVIYPVAEDQKSDLLRELLERVNYDS 241 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVFC T+ R +L + V L +Q+ER +AL+ R+GR V +ATD+AAR Sbjct: 242 VIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRNGRFEVLVATDIAAR 301 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 G+D+ D+ VI+ ++ +PE+ +HR GRTGRA G Sbjct: 302 GLDIADVSHVINYDVPQHPEDYIHRIGRTGRAAATG 337 >gi|327443709|gb|EGE90363.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2] Length = 560 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 60 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH++ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKPRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403 >gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina ymp] gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp] Length = 628 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 188/341 (55%), Gaps = 8/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-----NDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L + R Sbjct: 15 AVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPDGHPDREQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + L G + Sbjct: 75 HGPKQ-PRVLVLTPTRELAAQVHDSFK-LYARDLKFVSACIFGGVGMNPQVQALAKGVDV 132 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V PGRL D K +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FSA Sbjct: 133 LVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPAKRQNLLFSA 192 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S IT LA + R+ + N I+ R +A S + + +++ + Sbjct: 193 TFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITQGAWEQV 252 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ +R + L +H A+ G SQ R+ AL + + R+ +ATD+AARG Sbjct: 253 LVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANKVRILVATDIAARG 312 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 313 LDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353 >gi|54296291|ref|YP_122660.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris] gi|53750076|emb|CAH11468.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris] Length = 414 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/338 (36%), Positives = 183/338 (54%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + A+SE GY N TS+Q + L D+L SAQTG+GKT +F L + A + Sbjct: 12 LNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQK--ASQQTQT 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + L + PTRELA+Q + + AV GGV H + + L +G I+V Sbjct: 70 SRNRAKVLILTPTRELAIQAHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + + +VLDEAD MLD+GF DI+ I+ P KR+ L+FSAT + Sbjct: 130 TPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSATFT 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P + TLA+N AV ++IA N I V + + + ++L + +VF Sbjct: 190 PEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDGNHKLALLSHLLHKNNWGQTLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ K LAE VA+ G SQ +R+ AL + G+ + IATD+AARGID+ Sbjct: 250 SRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L PE+ +HR GRTGRAG G++V ++ Sbjct: 310 EKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLV 347 >gi|229821387|ref|YP_002882913.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333] gi|229567300|gb|ACQ81151.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM 12333] Length = 580 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 185/348 (53%), Gaps = 19/348 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN----DRF 69 AL + G V+ +Q L L+ D++ A+TG+GKT+ FG+ L ++ D Sbjct: 61 ALRDVGIVHPFPIQSLTLPVALQAHDIIGQAKTGTGKTLGFGIPLLERVVGPGEDGWDAV 120 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AP AL + PTRELAVQV +LE V GG + + L G +VV Sbjct: 121 EAPGAPQALVVVPTRELAVQVAGDLETAARHRKARVVQLYGGRAYEPQVAALGRGTEVVV 180 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D +R + L++SH++ VVLDEADEMLDLGF D+E +L ++P +R ++FSAT+ Sbjct: 181 GTPGRMIDLMRQRVLDLSHVRTVVLDEADEMLDLGFLPDVETLLAATPPQRHTMLFSATM 240 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---------DRDNAIVNILR 240 A+ LA+ + + R H D A L A+ D+ + +L+ Sbjct: 241 PGAVVALARRFMSHPTHI------RAHDPNDDGATLKAIRKVVYRAHALDKVEMLARLLQ 294 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G IVF T+ + ++ L + F A+ G+L Q R AL+ R G+ V +A Sbjct: 295 ADGRGLTIVFTRTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRHGKVDVLVA 354 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ D+ V++ + + + LHR GRTGRAG G +V + Sbjct: 355 TDVAARGIDIDDVTHVVNYQCPEDEKTFLHRIGRTGRAGNTGTAVTFV 402 >gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72] Length = 537 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 181/335 (54%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S+ GY T +Q + L D+L +AQTG+GKT F L + L A + PA Sbjct: 19 AISDTGYTTPTPIQAKAIPLVLAGGDLLAAAQTGTGKTAGFTLPVLHKLAATHVHPHPAG 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV ++ + V GGV+++ + L+ I+V TPG Sbjct: 79 KPRCLILTPTRELAAQVEESVQTYGKHLALTSMVMFGGVNINPQISALKKRVDILVATPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ K L++S ++ +VLDEAD MLD+GF DI +L PK+R+ L+FSAT S I Sbjct: 139 RLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V +A N ++ ++ + + +++ A+VF T Sbjct: 199 RDLANGLLHNPGCVEVAPRNTASERVEQTVYMIGQKQKRELLAWLIKEKQWFQALVFTRT 258 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + ++ + L +H A+ G SQ R+ AL +DG V +ATD+AARG+D+ L Sbjct: 259 KHGANKLAEYLTKHDIPAAAIHGNKSQSARTRALSQFKDGSLPVLVATDIAARGLDIDQL 318 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G ++ ++ Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGADGNAISLV 353 >gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like [Saccoglossus kowalevskii] Length = 700 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 211/394 (53%), Gaps = 21/394 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQ I +L R +L +Q + DV+ A+TG+GKT+AF L L L +N Sbjct: 127 PQTIA-SLKARSITHLFPIQAKTFDYVYDGHDVIAQARTGTGKTLAFALPLVEKL--KNT 183 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 F P L +APTRELA QV + + A + +C+ GG + + ++ G Sbjct: 184 EFKAGRPPQVLVMAPTRELAKQVSEDFQ---ASNPRLSTLCVYGGTAYWPQESAIRRGVD 240 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK------KR 180 ++VGTPGR+ D+++ LN+S LK V+LDE D MLD+GF D +E IL +S K Sbjct: 241 VLVGTPGRILDYVQKNTLNLSQLKHVILDEVDRMLDMGFADTVEEILSASYKMDNPGENP 300 Query: 181 RMLMFSATISPAITTLAKNYQKDAV-RVNIASENR--QHSDIDYRAVLVALSDRDNAIVN 237 + L+FSAT+ + AK Y K + RV++ + + + +++ A+ R I + Sbjct: 301 QTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKTATTVEHLAIRCHYRQRAATISD 360 Query: 238 ILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGR 294 +++ + K+ ++F T+ + L+ + Q V L G+++Q +R L+ RDG+ Sbjct: 361 VVQVYSGKHGRCMIFTETKKDANEMG--LSSSIRQDVQVLHGDIAQNQREITLKGFRDGK 418 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 R +ATDVAARG+D+P+++L++ E + EN +HRSGRTGRAGR G+SV N + Sbjct: 419 FRCLVATDVAARGLDIPEVDLIVMCEPPKDAENYIHRSGRTGRAGRTGVSVCFYKPNEEH 478 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388 + + R A + AP E I + A L+ Sbjct: 479 VLKLIERRAGIKFRRVGAPQPEDIIKTSADDALK 512 >gi|223937455|ref|ZP_03629359.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514] gi|223893806|gb|EEF60263.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514] Length = 645 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 139/431 (32%), Positives = 217/431 (50%), Gaps = 22/431 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ + G+ + +Q + L+ +DV+ +QTGSGKT AF + + +N Sbjct: 15 LQKAIDKMGFEQASPIQAEAIPVLLQGRDVVGQSQTGSGKTAAFAVPAIEKVDPQNRSVQ 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 L + PTRELAVQV E+ L K G+ GG S R+ L+ GA IV+ Sbjct: 75 ------ILILCPTRELAVQVSEEVHKLSIFKRGIHALPIYGGQSYERQFMGLRQGAQIVI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+R L + +K V+LDEAD MLD+GFR+DIEFIL + P +R+ + FSAT+ Sbjct: 129 GTPGRVMDHMRRGTLRLDQVKMVILDEADVMLDMGFREDIEFILQAVPTERQTVFFSATM 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I L + Y +D V I + ++ V + + ++ H K IV Sbjct: 189 PRPIQELIQKYARDPQSVRIEQKAMTVPTVEQFFYEVDRRFKVELLTRLIDIHDLKLGIV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V L + L G++SQ R + R +ATDVAARGID Sbjct: 249 FCNTKRMVDDLVDHLNAQGYSADRLHGDMSQAMRDRVMNKFRKSGLEFLVATDVAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + D+++V + +L + E+ +HR GRTGRAGR G ++ + + + + R + + Sbjct: 309 VDDVQVVFNYDLPYDAEDYVHRIGRTGRAGRSGRAISFVAGRELFQIQHIERFTKMKIQR 368 Query: 370 EPAPSVEAIRERDAQRILQDPLFLDS----IQGDEKK----MVDVLLAK-HDPEKIAAGF 420 P+ + + A +FLD +QG E K +V +LL + + IA+ Sbjct: 369 AKIPTADEVETARAN------VFLDKLRGLLQGGEYKKQDHLVSILLEEGFNSTDIASAL 422 Query: 421 LRIHRAGLCAP 431 + +AG AP Sbjct: 423 IHQLQAGEAAP 433 >gi|158424139|ref|YP_001525431.1| helicase [Azorhizobium caulinodans ORS 571] gi|158331028|dbj|BAF88513.1| helicase [Azorhizobium caulinodans ORS 571] Length = 582 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 193/369 (52%), Gaps = 10/369 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +Q + L +DVL AQTG+GKT AF L + + L R A Sbjct: 78 AVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLTLLEQGRAR---AR 134 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + VA+ IGGVS + L G +++ TPG Sbjct: 135 MPRTLILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDTKLLRGVDVLIATPG 194 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ L +S ++ +V+DEAD MLD+GF DIE I P R+ L FSAT+ P I Sbjct: 195 RLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSATMPPEI 254 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAI 248 L + + VRV ++ ++ I +LVA D LR +N I Sbjct: 255 QRLVSQFLSNPVRVEVSKPASANTSITQ--LLVASGREDYEKRETLRELIRNADQLQNGI 312 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+ + V+ + L +H F VV L G++ Q R+ AL R G A + +A+DVAARG+ Sbjct: 313 VFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLLVASDVAARGL 372 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+P + V + ++ + E+ +HR GRTGRAGR G ++ ++ + + + + ++ Sbjct: 373 DIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAAIEKLIGNAIP 432 Query: 369 WEPAPSVEA 377 W+ P EA Sbjct: 433 WQGEPLGEA 441 >gi|322496407|emb|CBZ31477.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 678 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 150/443 (33%), Positives = 225/443 (50%), Gaps = 37/443 (8%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE P V+ +AL RG ++ VQ N +R DVLV A+TGSGKT+AFG+ + LL Sbjct: 91 FEMNPIVV-KALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLL 149 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 F+ P A+ PTRELA+QV L + G+VV GGV+ + R L++ Sbjct: 150 KLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLVVTALYGGVAYANQERVLRS 207 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179 G IVV TPGR D + L+ + LDEAD MLD+GF+DDIE +L ++ Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267 Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231 + L+FSAT+ + T + KD +++ + R S I + S+ Sbjct: 268 GAERPVHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326 Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 + + ++++ Y GA +VF +T+ + + L G++ Q++R + ++ Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 RD + V IATDVAARG+DLP ++LVI S+ + +HR+GRTGRAGRKG+ V + Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQ 444 Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD---------PLFLDSIQGDE 400 + ER+ R A + PAP+ E I + A+ +D LF+D Q E Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMD--QAAE 502 Query: 401 KKMVDVLLAKHDPEKIAAGFLRI 423 LL DP +I A L + Sbjct: 503 ------LLKDADPVEILASALAV 519 >gi|260459532|ref|ZP_05807787.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum WSM2075] gi|259035086|gb|EEW36342.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum WSM2075] Length = 477 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/352 (34%), Positives = 190/352 (53%), Gaps = 4/352 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A G+ +Q + P L +D+ AQTGSGKT AF L + S ++A + A Sbjct: 33 KATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSKIIALGTKRR-A 91 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELAVQ+ ++ L V A+ +GGVS + + + G I++ TP Sbjct: 92 KTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAPGVDILIATP 151 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +R L +S K +VLDE D MLD+GF +D++ I ++ R+ +FSAT+ Sbjct: 152 GRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQTALFSATMPDE 211 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK K+ VR+ ++ ++ ++I V + + +L K+ I+F Sbjct: 212 IAELAKGLLKNPVRIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTMLADAAMKSVIIFSR 271 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R TK L F+ + G SQ R AL RDG R+ +ATD+AARGID+P Sbjct: 272 TKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILVATDIAARGIDVPG 331 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--PQNMQ-RRAERLFR 361 + V++ +L E+ +HR GRTGR G G+++ + +N + R+ ER+ R Sbjct: 332 ISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQVERIIR 383 >gi|229196679|ref|ZP_04323422.1| ATP-dependent RNA helicase [Bacillus cereus m1293] gi|228586754|gb|EEK44829.1| ATP-dependent RNA helicase [Bacillus cereus m1293] Length = 451 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + + E Sbjct: 9 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 68 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE + I+ R + + +A+ ++ Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 303 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 356 >gi|184200059|ref|YP_001854266.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201] gi|183580289|dbj|BAG28760.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201] Length = 535 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 137/384 (35%), Positives = 199/384 (51%), Gaps = 9/384 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE+ +P+ + L+ G +QE L L +DVL +TGSGKTVAF L L + Sbjct: 5 FEDLGVPEALSADLARVGITEAFPIQEKTLPDSLAGRDVLGRGRTGSGKTVAFALPLVAR 64 Query: 62 LLAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L S AS P L +APTRELA Q+ R + L G+ V GGVS R+ Sbjct: 65 LAGMAPGASRASRRAHRPTGLVLAPTRELATQIDRTVAPLAKAAGLNTTVIFGGVSQKRQ 124 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 + L +G IVV PGRL D I+ L + ++ VLDEAD M D+GF + IL +P Sbjct: 125 EKALADGVDIVVACPGRLEDLIKQGLLTLDDVRVTVLDEADHMADMGFLPVVTRILAKTP 184 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 K + L+FSAT+ + L K + +D V + + + +D++ VLV +D A++ Sbjct: 185 KGSQRLLFSATLDNGVDVLVKKFLQDPVLHSADNAQAAVTTMDHQ-VLVTHADDKQALIE 243 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L G ++F T+ + K L++ V L G LSQ R L DG RV Sbjct: 244 AL-ASGTGRRMMFTRTKYRAKKMAKKLSQAGIPAVDLQGNLSQGARDRNLGAFSDGDVRV 302 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARG+ + D+ELV+H + + ++ LHRSGRT RAG G + + + + Sbjct: 303 LVATDVAARGVHVDDVELVVHIDPPAEHKSYLHRSGRTARAGASGAVITIATTEERSDVD 362 Query: 358 RLFREANVSV-VWEPAPSVEAIRE 380 +L ++A V V E P E ++E Sbjct: 363 KLMKKAGVKPRVDEVRPDSEVVKE 386 >gi|197119152|ref|YP_002139579.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem] gi|197088512|gb|ACH39783.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem] Length = 482 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 195/348 (56%), Gaps = 4/348 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E IP + + + E G+ T +QE L L KDV AQTG+GKT F +++ Sbjct: 1 MKFTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + LL++ + P AL +APTREL VQ+ ++ + L TG + GGV ++R Sbjct: 61 TKLLSQA-KTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRD 119 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178 L+ GA IV+GTPGRL D+++ K ++ ++A+V+DEAD M D+GF D+ FIL P Sbjct: 120 ALKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPY 179 Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 KR+ L+FSAT++ + LA + +V++ E ++ V+ ++ ++ Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKEKFPLLLG 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +LR G + ++F +T+ L + F +SG++ Q++R L +DG + Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLPI 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 IATDVA+RGI + + VI+ +L + E+ +HR GRT RAG +GM++ Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAI 347 >gi|163732038|ref|ZP_02139484.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och 149] gi|161394336|gb|EDQ18659.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och 149] Length = 504 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 194/363 (53%), Gaps = 13/363 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY T +Q + P L +DVL AQTG+GKT +F L + TLLA Sbjct: 31 PKVL-KAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 88 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L + PTRELA QV + + A+ IGGVS + + + G + Sbjct: 89 --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLIDKGVDV 146 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 147 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 206 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-------IVNILR 240 T++P I + + RV +A + I+ + S +D + ++ Sbjct: 207 TMAPEIERITNTFLSAPERVEVARQATASETIEQGVLKFKASRKDREGTEKRKLLRALID 266 Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G K NAI+FC+ + V K L ++ + + G+L Q +R+ L RDG + Sbjct: 267 AEGEKCTNAIIFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDGSLKFL 326 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 IA+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGR G ++ + +R E Sbjct: 327 IASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPRDERNLED 386 Query: 359 LFR 361 + R Sbjct: 387 IER 389 >gi|73952801|ref|XP_850174.1| PREDICTED: similar to nucleolar protein GU2 isoform 2 [Canis familiaris] Length = 738 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q P KD++ A+TG+GKT +F + L Sbjct: 140 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L +APTRELA QV ++ + + K + VA GG S + + Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 257 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178 +NG I+VGTPGR+ DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K Sbjct: 258 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 317 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 318 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 377 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++L+ Y G++ AI+FC T+ +V+ + H+ Q L G+++Q +R L+ Sbjct: 378 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 435 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 R+G +V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P Sbjct: 436 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 495 Query: 350 Q 350 + Sbjct: 496 R 496 >gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 402 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/397 (33%), Positives = 214/397 (53%), Gaps = 14/397 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + +AL + T +Q + L+ KD+L SAQTG+GKT+AF + L + LL E Sbjct: 3 LPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLLNEP 62 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125 + S AL I PTRELA QV E+ L ++ + VA+ IGG + R+ LQ Sbjct: 63 NTGS------ALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKP 116 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+GTPGR+ DHI K L ++ +VLDE D M D+GF IE I+ PK R+ LMF Sbjct: 117 QIVIGTPGRIIDHIERKTLINRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMF 176 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA+ Y R+++ E I V + S++ +V L Sbjct: 177 SATLPGDIVKLAEKYLNRPERISVDCEATTSVKIKQEIVYASESEKYEKLVTQL-CQREG 235 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + I+F T+ + L + + +A+ G+L Q +R + R GR ++ +ATDVA+ Sbjct: 236 SIIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVAS 295 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+P ++ VI+ + + + +HR GRT RAG +G ++ FV PQ+ +R +E Sbjct: 296 RGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPALADKEGE 355 Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 ++ SV+ ++R+++++ + P L + G +K Sbjct: 356 LNFDC----SVQ-FKKRNSKKVFKRPSTLKTKYGRKK 387 >gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523] Length = 570 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 114/344 (33%), Positives = 192/344 (55%), Gaps = 5/344 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q I + + GY T +Q+ + L +DVL AQTG+GKT AF L L + + Sbjct: 14 LSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNI---- 69 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 D S +P L +APTRELA+QV + + + CI GG + R L+ G Sbjct: 70 DLRSRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQGV 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGT GR+ DHI L + +L+A+VLDEADEML +GF DD+ F+L ++ + L+F Sbjct: 130 KVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHISEQCQRLLF 189 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SATI I + + Y ++ ++ + ++ + + + + +++ + +A+ +L Sbjct: 190 SATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEIEETD 249 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ S L ++V A++G++ Q +R + R+ ++ + +ATDV A Sbjct: 250 GVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRNAKSDILVATDVVA 309 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 RGIDL + VI+ ++ ++ + +HR GRTGRAGR+G S+ ++P Sbjct: 310 RGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353 >gi|329905919|ref|ZP_08274297.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium IMCC9480] gi|327547410|gb|EGF32236.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium IMCC9480] Length = 446 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/379 (35%), Positives = 207/379 (54%), Gaps = 15/379 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--R 68 I A++E GY T +Q + L D+L AQTG+GKT F L L L Sbjct: 12 IVRAVTEHGYTIPTPIQAQAIPAVLLGGDLLAGAQTGTGKTAGFTLPLLHRLSTSTSAPT 71 Query: 69 FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A+ P+ AL +APTRELA QV + + V GGV ++ + + L++G I Sbjct: 72 TNTATRPIRALILAPTRELAAQVEESVRTYGKYLKLTSTVIFGGVGINPQIKMLKHGVDI 131 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL DH+ +N+S ++ ++LDEAD MLD+GF DI+ +L PKKR+ L+FSA Sbjct: 132 LVATPGRLLDHMGQGTVNLSQVEILILDEADRMLDMGFIKDIKKVLAVLPKKRQNLLFSA 191 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRYHGA 244 T S I TLA + +A R++S ++ A + DRD + ++++ + Sbjct: 192 TFSEEIKTLADGLLNAPKMIEVA---RRNSTVEIIAQKIYPVDRDKKHPLLAHLIKTNNW 248 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ ++ + L + +A+ G SQ R+ AL +DG+ +V +ATD+A Sbjct: 249 PQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTKALAEFKDGKLQVLVATDIA 308 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF- 360 ARGID+ L V++ +L + PE+ +HR GRTGRAG G +V ++ M R E+L Sbjct: 309 ARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGATGEAVSLVCVDEHEMLRDIEKLIK 368 Query: 361 REANVSVV--WEPAPSVEA 377 RE VV +EP P+ A Sbjct: 369 RELPKEVVPGFEPDPNARA 387 >gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus] Length = 735 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 200/348 (57%), Gaps = 16/348 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q P KD++ A+TG+GKT +F + L L + + + Sbjct: 150 LKGRGVTYLFPIQVKTFGPIYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETVKKSRS 209 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV ++ + + K + VA GG S + ++NG I+VGTPGR Sbjct: 210 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHIRNGIDILVGTPGR 267 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189 + DH++ L++S L+ VVLDE D+MLDLGF + +E I+ S K + L+FSAT Sbjct: 268 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 327 Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y K +V++ + Q + +++ A+ S R I ++L+ Y G++ Sbjct: 328 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 387 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+FC T+ +V+ + H+ Q L G+++Q +R L+ R+G +V +AT+V Sbjct: 388 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 445 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 AARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + F P+ Sbjct: 446 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 493 >gi|229103076|ref|ZP_04233764.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28] gi|228680360|gb|EEL34549.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28] Length = 450 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + + E Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDTE- 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 71 -----SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 496 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/338 (36%), Positives = 188/338 (55%), Gaps = 6/338 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++++GY T++Q + L KDV+ +AQTG+GKT F L L L + PA Sbjct: 14 KAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEIL----SKGKPA 69 Query: 73 S--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA QV +E + AV GGVS+ + L+ G I+V Sbjct: 70 QRGQVRALVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIAALKQGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ S L+ +VLDEAD MLD+GF DI +L PK+R+ LMFSAT S Sbjct: 130 TPGRLLDLCNQRALSFSTLEILVLDEADRMLDMGFIRDIRKVLAMLPKQRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V SD+ + ++++++ + + +VF Sbjct: 190 DDIRELAKGLVNNPVEISVTPRNATANTVTQWVTPVGQSDKTSVLIDLIKDNNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + A+ G SQ R+ AL + G+ +V +ATD+AARGID+ Sbjct: 250 SRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVMVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + E+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLV 347 >gi|314927518|gb|EFS91349.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1] gi|328907794|gb|EGG27557.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium sp. P08] Length = 536 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 190/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 44 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 103 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + LQ G Sbjct: 104 EELTTKGKPQALVMCPTRELALQVSQDISTAASVRGARVLTVYGGVGYEPQIDALQAGVD 163 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH+ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 164 VVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGRTPTPRQTMLFS 223 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ V V + Q + D + + D+ I IL+ + A Sbjct: 224 ATMPAPIMALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDA 283 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G + +ATDVA Sbjct: 284 EKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGDVTILVATDVA 343 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 344 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLV 387 >gi|326791603|ref|YP_004309424.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427] gi|326542367|gb|ADZ84226.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM 5427] Length = 477 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 112/334 (33%), Positives = 188/334 (56%), Gaps = 7/334 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T VQE ++ LR++D++V +QTGSGKT AF + + ++ E ++ P AL Sbjct: 20 GFNKPTPVQERVIPEVLRKQDLIVQSQTGSGKTAAFAIPICQEVIWEENK------PQAL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELA+QV + + + G ++++L H+VVGTPGR+ DH Sbjct: 74 VLTPTRELAIQVKEDFFQIGRFKRIKAVGLYGKAPFEVQQKELSQKTHVVVGTPGRVLDH 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 + L SH+ +V+DEADEML +GF D +E I+ + P R L+FSAT++P I L + Sbjct: 134 LERGTLEASHISYLVIDEADEMLRMGFIDQVESIIAALPLNRVTLLFSATMAPHIQQLCE 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 Y + ++I ++ + ++I+ + + + + ++ I+FC+ + V Sbjct: 194 KYLRTPKTIHITTDLSKPNNIEEIGIETHEQTKLAVLEAVTIVENPESCIIFCNRKERVE 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 K L + + V + G++ Q++R ++ R GR R +ATDVAARGID+ + VI+ Sbjct: 254 MVWKRLNDLNYGVGKIHGDMEQKQRFAVMEDFRKGRFRYLVATDVAARGIDIDHITHVIN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351 ++ EN +HR GRTGRAGR G + +F+ P++ Sbjct: 314 FDVPEQAENYVHRMGRTGRAGRSGKTFIFIQPED 347 >gi|225166117|ref|ZP_03727846.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2] gi|224799638|gb|EEG18138.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2] Length = 606 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 200/374 (53%), Gaps = 8/374 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +A+ + G+ + +Q A++ L DV+ + TGSGKT AF L + + Sbjct: 7 PELL-KAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERVDTK-- 63 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAH 126 A L + PTRELAVQV E+ L + K GV+ GG S R+ R L GA Sbjct: 64 ----LKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAGAQ 119 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V+GTPGR+ DH+ L + L V+LDE D MLD+GFRDDIE IL S P++R+ L FS Sbjct: 120 VVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLFFS 179 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I + + + V I ++ + +D V + + ++ + + Sbjct: 180 ATMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFRY 239 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+FCST+ V + L + L G+++Q +R+ ++ + IATDVAAR Sbjct: 240 GIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAAR 299 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ DLE+V + +L ++ E+ HR GRTGRAGRKG + + + + + R A + Sbjct: 300 GLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVRFARLD 359 Query: 367 VVWEPAPSVEAIRE 380 + E PS++ + E Sbjct: 360 IRRERVPSLDQVEE 373 >gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales bacterium SWAT-3] gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales bacterium SWAT-3] Length = 423 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 192/376 (51%), Gaps = 9/376 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 LSE + TSVQE + L KDVL AQTG+GKT AFGL + LLA D P Sbjct: 20 TLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQRLLATKDNVIPNP 79 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA QV + T + V V GGVS+ + +L+ GA I+V TP Sbjct: 80 KLVRALVLVPTRELAQQVFDNVTSYAKGTDLKVVVAYGGVSMKVQTDNLRAGADILVATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K + +S + +VLDEAD MLD+GF DI+ IL + R+ L FSAT Sbjct: 140 GRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNEVRQTLFFSATFDNK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A + + + N + V + + ++ + + +VF Sbjct: 200 IKAIAHRMMQSPSEIQVTPTNSTAETVKQMVYPVDKKRKSELLAYLIGSNNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ K L + +++G+ SQ R AL + G+ R IATDVAARGID+ Sbjct: 260 TKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGIDIQQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369 LE V++ ++ E+ +HR GRTGRAG G+++ ++ + + ERL + + W Sbjct: 320 LEQVVNYDMPYKAEDYVHRIGRTGRAGNSGLAISLMSHDEAYLLGAIERLL-DTRLPQEW 378 Query: 370 ----EPAPSVEAIRER 381 EP+P + ER Sbjct: 379 LKGFEPSPEQDVSPER 394 >gi|332704723|ref|ZP_08424811.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554872|gb|EGJ51916.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 517 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 189/335 (56%), Gaps = 7/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77 GY T +Q + L KDV+ AQTG+GKT AF L L LL +N +P P+ Sbjct: 20 GYTTPTPIQTRAIPAVLAGKDVMGLAQTGTGKTAAFVLPLLQRLLNDN---APTRGPIRV 76 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L +APTRELAVQ+ + L +TG+ AV IGGV + + L+ A + V PGRL D Sbjct: 77 LVLAPTRELAVQIHQSFFGLGKQTGIRSAVVIGGVGAMPQIKALRQ-ATVAVACPGRLVD 135 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 + +++S + A+VLDEAD MLD+GF D+ ++ P++R+ ++FSAT+ I +LA Sbjct: 136 LMNQGAVDLSKVSALVLDEADRMLDMGFLPDVRKVMAKLPRQRQNMLFSATMPAEIRSLA 195 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 ++ +D V V + S + + + VA S + + + +L G +A+VF T+ Sbjct: 196 ESGLRDPVTVQV-SNTAPAATVSHALYPVAGSRKQDLLEKLLNDLGKNSALVFTRTKHRA 254 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + LA F V +L G LSQ R A+ R+G+ RV +ATD+AARGID + LV+ Sbjct: 255 KGLAQKLAGKGFSVTSLQGNLSQGRRQEAMDGFRNGKYRVMVATDIAARGIDCERVSLVV 314 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 + +L E HR GRTGRA R G +V V P++ Sbjct: 315 NFDLPDTAEAYTHRIGRTGRAERNGEAVSLVAPED 349 >gi|221123568|ref|XP_002167666.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Hydra magnipapillata] Length = 635 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 11/363 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G L VQ N L DV+V A+TG+GKT+ F L + L D +PL L Sbjct: 70 GVNKLFPVQYTTYNAILDGSDVIVQARTGTGKTLGFALPVLEKL-KNIDSEQKRKSPLVL 128 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA+Q+ +E+E Y + ++ GG ++ ++L+NG +VGTPGR+ DH Sbjct: 129 TLAPTRELAIQICKEVE-KYKPRQMTISCFYGGAPYDKQEQELRNGIDFLVGTPGRILDH 187 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRMLMFSATISPAITT 195 I L++S L+ V+LDEAD M+D+GF++ +E IL + K + L+FSAT+ + Sbjct: 188 INKGRLDVSKLQYVILDEADRMMDMGFQESMEEILSYAYTEDNKPQTLLFSATVPAWLQK 247 Query: 196 LAKNY-QKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--NAIVF 250 ++ Y K+ + ++ +N+ + ++++A+ DR + I +I++ + K I+F Sbjct: 248 NSEKYLTKNLKKFDLIGRDKNKGATTVEHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIF 307 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 ST+ + ++ V L G++ Q++R LQ R+G+ IATDVAARG+D+ Sbjct: 308 TSTKQEANELALNSVINMDSQV-LHGDIQQKQRELTLQSFRNGKFNCLIATDVAARGLDI 366 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P+++LVI E + ++ +HR+GRTGRAGRKG+ + + + +A +S Sbjct: 367 PEVDLVIQTEPPKDVDSYIHRAGRTGRAGRKGVCIIFYKPGQEYGVAAVEHKAGISFTRI 426 Query: 371 PAP 373 AP Sbjct: 427 GAP 429 >gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5] Length = 678 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 150/443 (33%), Positives = 225/443 (50%), Gaps = 37/443 (8%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE P V+ +AL RG ++ VQ N +R DVLV A+TGSGKT+AFG+ + LL Sbjct: 91 FEMNPIVV-KALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLL 149 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 F+ P A+ PTRELA+QV L + G+VV GGV+ + R L++ Sbjct: 150 KLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLVVTALYGGVAYANQERVLRS 207 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179 G IVV TPGR D + L+ + LDEAD MLD+GF+DDIE +L ++ Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267 Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231 + L+FSAT+ + T + KD +++ + R S I + S+ Sbjct: 268 GAERPVHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326 Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 + + ++++ Y GA +VF +T+ + + L G++ Q++R + ++ Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 RD + V IATDVAARG+DLP ++LVI S+ + +HR+GRTGRAGRKG+ V + Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQ 444 Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD---------PLFLDSIQGDE 400 + ER+ R A + PAP+ E I + A+ +D LF+D Q E Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMD--QAAE 502 Query: 401 KKMVDVLLAKHDPEKIAAGFLRI 423 LL DP +I A L + Sbjct: 503 ------LLKDADPVEILASALAV 519 >gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506] gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506] Length = 499 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/379 (35%), Positives = 199/379 (52%), Gaps = 16/379 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVADAGYTEPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLTMLEQGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVEENFTKYGKNHKLNVALLIGGVSFGDQDAKLLRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ L +S ++ +V+DEAD MLD+GF DIE + P R+ L FSAT+ P I Sbjct: 132 RLLDHVERGRLLLSGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFSATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAI 248 L + + V+V + + ++I LVA D A LR +N I Sbjct: 192 QRLVAQFLSNPVQVEASRPSSTAANITQ--FLVACGKEDFAKRETLRELINSADNLQNGI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ ++ V+ K L H F VVAL G++ Q+ R AL R G A + +A+DVAARG+ Sbjct: 250 IFCNRKSEVAVVHKSLKRHGFNVVALHGDMDQRSRMQALDQFRTGEANLLVASDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA--ERLFREANV 365 D+P + V + + + E+ +HR GRTGRAGR G + V P + + A E+L Sbjct: 310 DIPAVSHVFNYDTPHHAEDYVHRIGRTGRAGRSGAAFTLVTPADTKSLAAIEKLI---GR 366 Query: 366 SVVWEPAPSVEAIRERDAQ 384 S+ W S++A+ +A+ Sbjct: 367 SIDWREGSSLDALPPSEAR 385 >gi|170782512|ref|YP_001710845.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169157081|emb|CAQ02256.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 761 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 195/363 (53%), Gaps = 6/363 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67 Q I L E G + +Q A + L +DVL +TGSGKT+AFG L LL END Sbjct: 385 QNIVRVLEELGASSPFPIQAATIPDVLAGRDVLGRGRTGSGKTIAFGAPLVERLL-ENDG 443 Query: 68 --RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AL +APTRELA+Q+ R ++ + G+ GGV ++ LQ G Sbjct: 444 AKNRKMGRKPRALILAPTRELAMQIDRTVQPIARSVGLFTTTIFGGVPQFKQVGALQRGV 503 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D I L++S + VLDEAD M DLGF + ++ IL K + L+F Sbjct: 504 DILIATPGRLEDLIDQGRLDLSEIVVTVLDEADHMCDLGFLEPVQRILRQVKKDGQRLLF 563 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + TL + +A E++ S ID+R +L+ D+ AI+ L G Sbjct: 564 SATLDKGVATLVNEFLPSPSVHEVAGEDQASSTIDHRVLLIEQRDK-AAIIEQL-SSGEG 621 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F TRA + L + +L G+L+Q R+ LQ++ G+ RV +ATDVAA Sbjct: 622 KTLIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVRVLVATDVAA 681 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LVI A+ ++ LHR+GRTGRAG++G V +I + +RR + L A + Sbjct: 682 RGIHVDDIGLVIQADAPDEYKSYLHRAGRTGRAGKQGTVVTLITKARRRRMDDLLGRAEI 741 Query: 366 SVV 368 Sbjct: 742 KAT 744 >gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia thailandensis MSMB43] Length = 402 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 200/372 (53%), Gaps = 11/372 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + T AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + AV GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + LA+ +A+ G SQ R+ AL ++ +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKNSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQE 372 Query: 367 VV--WEPAPSVE 376 V+ +EP P+ + Sbjct: 373 VIPGFEPDPNAK 384 >gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 448 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 187/338 (55%), Gaps = 3/338 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY N T +Q + L D+L AQTG+GKT F L + L + AS Sbjct: 15 AVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHRLATSGTPHASAS 74 Query: 74 A--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P+ AL + PTRELA QV + + AV GGV ++ + + L++G I+V Sbjct: 75 AQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINPQIKMLKHGVDILVA 134 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ +N++H++ +VLDEAD MLD+GF DI +L + PK R+ L+FSAT S Sbjct: 135 TPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAALPKNRQNLLFSATFS 194 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + +A N I+ + V + + ++++ + +VF Sbjct: 195 NEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKKHPMLAHLIKSNNWSQVLVF 254 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ + L + +A+ G SQ R+ AL +DG +V +ATD+AARGID+ Sbjct: 255 TRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQVLVATDIAARGIDI 314 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 315 DQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLV 352 >gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4] gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579] gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4] Length = 458 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + + E Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 71 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|117918867|ref|YP_868059.1| ATP-dependent RNA helicase RhlB [Shewanella sp. ANA-3] gi|189040046|sp|A0KS84|RHLB_SHESA RecName: Full=ATP-dependent RNA helicase rhlB gi|117611199|gb|ABK46653.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 439 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/341 (35%), Positives = 195/341 (57%), Gaps = 9/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66 + +AL+E G+ T +Q L L+ KD+ AQTG+GKT+AF +A L ST + EN Sbjct: 20 VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEN 79 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + P A+ +APTRELA+Q+ ++ L + + V + GG S +R+ L G Sbjct: 80 RQLN---QPRAIIMAPTRELAIQIAKDAILLAKHSHLKVGIVYGGESYDVQRKTLDQGVD 136 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184 I++GT GR+ D++R +N+ ++AVVLDEAD M DLGF DI F+ P +R ++ Sbjct: 137 ILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIRFLFRRMPSADQRLNML 196 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + LA ++ + V+V IA E + +I + D+ ++ ++ Sbjct: 197 FSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLIEEDWP 256 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF +T+ S L +V L+G++ Q++R L+ G+ + +ATDVA Sbjct: 257 EKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVA 316 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ + D+ V + +L + E+ +HR GRTGRAG KG+SV Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSV 357 >gi|167581446|ref|ZP_02374320.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH] Length = 517 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 56 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 114 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 115 AQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 174 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 175 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 228 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 229 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 288 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 289 QTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 348 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 349 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 408 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 409 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 446 >gi|56460652|ref|YP_155933.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] gi|56179662|gb|AAV82384.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] Length = 416 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/372 (34%), Positives = 197/372 (52%), Gaps = 8/372 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T +Q+ + + D+L +AQTG+GKT F L L L Sbjct: 19 ILRAVTECGYTTPTPIQQQAIPTVMAGHDLLAAAQTGTGKTAGFTLPLLHKLSQTKTDGK 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA QV L TG+ V GGV ++ + L+ G I+V Sbjct: 79 PVIK--ALILTPTRELAAQVEDNLNTYAKYTGLKSLVIFGGVGINPQISALRRGVDILVA 136 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH R +++S + ++LDEAD MLD+GF DI+ ++ P+KR+ L+FSAT S Sbjct: 137 TPGRLLDHSRQGTVDLSKIDVLILDEADRMLDMGFIHDIKKVMKLIPEKRQTLLFSATFS 196 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L++ + + + +A +N I+ R V + + ++ + +VF Sbjct: 197 SEIKALSQQFMQQPKLIEVARQNAAADTIEQRVYPVDKKRKRELLSYLIGSRNWRQVLVF 256 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L + +A+ G SQ R+ AL + G+ RV +ATD+AARGID+ Sbjct: 257 TRTKHGANRLATQLTDDGLPAMAIHGNKSQGARTKALAQFKAGKLRVLVATDIAARGIDI 316 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFR-EANVS 366 +L VI+ EL E+ +HR GRTGRAG +G + V V + R E+L + E Sbjct: 317 DELPHVINFELPQVAEDYVHRIGRTGRAGSEGEAASLVCVDEHKLLRDIEKLTKNEIPRE 376 Query: 367 VV--WEPAPSVE 376 V+ +EP PS++ Sbjct: 377 VIPGFEPDPSIK 388 >gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 550 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L+ +DV+ +AQTG+GKT F L L LL++ + Sbjct: 23 ILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE-LLSKGQKAQ 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A L + PTRELA QV +E + AV GGV ++ + L++G ++V Sbjct: 82 -AGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGVDVLVA 140 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D K + + L+ +VLDEAD MLD+GF DI IL PK+R+ LMFSAT S Sbjct: 141 TPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 200 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V + + +++ H + +VF Sbjct: 201 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKAALLTQLIKQHDWQQVLVF 260 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L E + A+ G SQ R+ AL ++G+ RV +ATD+AARG+D+ Sbjct: 261 SRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDI 320 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 321 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 358 >gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium pseudotuberculosis FRC41] gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium pseudotuberculosis FRC41] gi|302205685|gb|ADL10027.1| Putative ATP-dependent RNA helicase [Corynebacterium pseudotuberculosis C231] gi|302330237|gb|ADL20431.1| Putative ATP-dependent RNA helicase [Corynebacterium pseudotuberculosis 1002] gi|308275920|gb|ADO25819.1| Putative ATP-dependent RNA helicase [Corynebacterium pseudotuberculosis I19] Length = 441 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 181/340 (53%), Gaps = 2/340 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +ALSE+G + ++QE L L +D++ A+TG GKT+ FG+ L + D Sbjct: 19 IVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFGVPLLDRVFDAADVAE 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA QVG +LE +T V V GG + + L G +VVG Sbjct: 79 LDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQVLTAGVDVVVG 138 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L + H+ +VLDEADEMLDLGF DIE +L + + + L+FSAT+ Sbjct: 139 TPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQHQTLLFSATMP 198 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAI 248 + TLA+ + + + N H+ V+ D + L+ I Sbjct: 199 GPVLTLARTFMSRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARALQAKERGKTI 258 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + + LA F+V + G+L Q R +L M R+GR + +ATDVAARG+ Sbjct: 259 IFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRVDILVATDVAARGL 318 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ D+ VI+ + P +HR GRTGRAG G ++ ++ Sbjct: 319 DIDDVTHVINYQTPDAPMTYVHRIGRTGRAGHTGTAITLV 358 >gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp. AL212] gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212] Length = 457 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 192/347 (55%), Gaps = 14/347 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ E GY T +Q+ + + DV+ SAQTG+GKT AF L TL Sbjct: 7 NLHPSILKAIQEAGYTTPTPIQQQAVPELIAGHDVMASAQTGTGKTAAFMLPALHTLA-- 64 Query: 66 NDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119 +PA P L + PTRELA+QV E Y K + V +GG+ + + Sbjct: 65 ----TPAQIRSRGPRVLVLTPTRELALQVS-EAAKKYGKYLPRINVVSILGGMPYPLQNK 119 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L I+V TPGRL DHI+ ++ L+ +VLDEAD MLD+GF +D+E I ++P Sbjct: 120 LLSQPVDILVATPGRLIDHIQRGRIDFKRLQMLVLDEADRMLDMGFIEDVETIAAATPAT 179 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNI 238 R+ L+FSAT+ AI +A K R+ ++S + +I+ R +S ++ + ++ Sbjct: 180 RQTLLFSATLDNAIDRVAAKLLKTPQRIQVSSPKSKLDNIEQRLHYADDMSHKNRLLDHV 239 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 LR K AIVF +T+ L + AL G+++Q+ER+ L +R+G RV Sbjct: 240 LRDETLKQAIVFTATKRDADSLADTLYAQGYAAAALHGDMNQRERNRTLTRLRNGGLRVL 299 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARGID+ D+ VI+ +L E+ +HR GRTGRAG G++V Sbjct: 300 VATDVAARGIDVADITHVINFDLPKFAEDYVHRIGRTGRAGAAGIAV 346 >gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus] gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus norvegicus] Length = 455 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|119357064|ref|YP_911708.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354413|gb|ABL65284.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides DSM 266] Length = 418 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 1/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I AL E GY T +Q + L+ D+L AQTG+GKT AF + + +L+E Sbjct: 7 NIIEPILLALREEGYSTPTPIQAEAIPIVLQGIDLLGCAQTGTGKTAAFAIPILQ-ILSE 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N + +L + PTRELA+Q+G + TG+ V GGV+ + + L G Sbjct: 66 NKLVDKSRKIRSLIVTPTRELAIQIGESFKAYGRHTGLTNTVIFGGVNQNPQTASLLRGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + L++ ++ +VLDEAD MLD+GF D++ IL PKK++ L F Sbjct: 126 DILVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDVKKILAHLPKKKQSLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P I LA + +V++ + I+ V ++++ ++++L+ K Sbjct: 186 SATMPPEIVKLAATILHNPSKVSVTPVSSTVEIINQAIYFVDKGNKNSLLLDLLKDKNIK 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++VF T+ + K L +H A+ G +Q R AL + RV +ATD+AA Sbjct: 246 TSLVFTRTKHGADKVVKYLLKHHITAEAIHGNKAQNARQRALNNFKAQTTRVLVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ DLE VI+ E+ + PE +HR GRTGRAG KG ++ Sbjct: 306 RGIDVDDLEYVINFEMPNIPETYVHRIGRTGRAGAKGTAL 345 >gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus] gi|52782790|sp|Q9CWX9|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName: Full=DEAD box protein 47 gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus] gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus] gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus] gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus] gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus] gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus musculus] Length = 455 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|302536730|ref|ZP_07289072.1| ATP-dependent RNA helicase [Streptomyces sp. C] gi|302445625|gb|EFL17441.1| ATP-dependent RNA helicase [Streptomyces sp. C] Length = 596 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/346 (36%), Positives = 186/346 (53%), Gaps = 10/346 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G V+ +QE L L DV+ A+TG+GKT+ FGL L ++ D R Sbjct: 74 EALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVVVPADVEAGR 133 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P +P AL + PTREL QV +L V V GG + + L+ G Sbjct: 134 ARPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 193 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGRL D K L++S +KA+VLDEADEMLDLGF D+E I++ P KR+ ++F Sbjct: 194 DVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVEKIMNLLPAKRQTMLF 253 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNILRYH 242 SAT+ A+ LA+ Y + SE+ + ++I D+ + IL+ Sbjct: 254 SATMPGAVIGLARRYMSQPTHIRAVSEDGEGATVANITQHVFRAHNMDKPELVSRILQAE 313 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G A++FC T+ + + + L F A+ G+L Q R AL+ R+G+ V + TD Sbjct: 314 GRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 373 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI+ + + + LHR GRTGRAG KG +V ++ Sbjct: 374 VAARGIDVEGVTHVINYQTPEDEKTFLHRVGRTGRAGNKGTAVTLV 419 >gi|153839935|ref|ZP_01992602.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|260901625|ref|ZP_05910020.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|149746542|gb|EDM57530.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|308108886|gb|EFO46426.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|328470634|gb|EGF41545.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329] Length = 417 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 196/383 (51%), Gaps = 10/383 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q + E L+ V T VQE + L KD+L +AQTG+GKT AFGL + + + Sbjct: 10 IEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQAVQQKK 69 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +P AL + PTRELA QV L T + + GG S+ ++ L+ GA Sbjct: 70 RNGTPH----ALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEEGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH+ +NIS +VLDEAD MLD+GF D++ IL P +++++FS Sbjct: 126 ILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I T+A V V ++ N + V + + ++ + Sbjct: 186 ATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ K L + V+++G+ SQ R AL + G+ R IATDVAAR Sbjct: 246 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR--RAERLFREAN 364 G+D+ +LE V++ ++ E+ +HR GRTGRAG+ G++V ++ Q+ + RA + Sbjct: 306 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSQDEEYLLRAIETLLDQR 365 Query: 365 VSVVW----EPAPSVEAIRERDA 383 + W EP+ E ERD Sbjct: 366 LPQEWLEGFEPSLIEEVEPERDG 388 >gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 427 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 201/378 (53%), Gaps = 8/378 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+SE+GY + +Q+ + L+ KDVL SAQTG+GKT F L + L+ N+ Sbjct: 14 KAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIHRLI--NNPKQGR 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA Q+ + + V GGV+ + + R L+ G I+V TP Sbjct: 72 RKIRALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTLRQGVDILVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D L++S ++ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT + Sbjct: 132 GRLLDLQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQNLLFSATFNTD 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I A + + V V EN +D ++ V S + ++ +R +VF Sbjct: 192 IKKFASSILTNPVLVEATPENTTAEKVDQKSYRVDKSRKTEMLIKFIREGNWDQVLVFTR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R ++ L + A+ G +Q R AL + G+ RV +ATD+AARG+D+P Sbjct: 252 TKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVLVATDIAARGLDIPL 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVW 369 L VI+ EL + PE+ +HR GRTGRAG G ++ ++ + R E+L E S V Sbjct: 312 LPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRGIEKLLGEKLHSEVL 371 Query: 370 E---PAPSVEAIRERDAQ 384 E P ++ I++ A+ Sbjct: 372 EGFQPTDTLAQIKKEAAE 389 >gi|297202208|ref|ZP_06919605.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083] gi|297148059|gb|EDY61279.2| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083] Length = 723 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 179/326 (54%), Gaps = 22/326 (6%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVG 91 DV+ A+TG+GKT+ FGL L + D R P AP AL + PTREL QV Sbjct: 11 DVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPEDLTDAPQALVVVPTRELCTQVT 70 Query: 92 RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151 +L+ V V GG + + L+ G +V+GTPGRL D K LN+SH+KA Sbjct: 71 NDLQTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVVIGTPGRLLDLAGQKKLNLSHIKA 130 Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 +VLDEADEMLDLGF D+E I++ P +R+ ++FSAT+ A+ +LA+ Y +N S Sbjct: 131 LVLDEADEMLDLGFLPDVEKIINLLPARRQTMLFSATMPGAVISLARRYMSQPTHINATS 190 Query: 212 EN---------RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 + +QH YRA + D+ + IL+ G +VFC T+ + + Sbjct: 191 PDDAGRTVANTKQHV---YRAHNM---DKPEMVARILQAEGRGLVMVFCRTKRTAADLAD 244 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 L + F A+ G+L Q R AL+ R+G+ V + TDVAARGID+ + VI+ + Sbjct: 245 QLKQRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQCP 304 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVI 348 + LHR GRTGRAG KG+++ ++ Sbjct: 305 EEEKTYLHRIGRTGRAGAKGIAITLV 330 >gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171] Length = 455 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + + E Sbjct: 9 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 68 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 303 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 >gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S] gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S] Length = 461 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/371 (34%), Positives = 197/371 (53%), Gaps = 3/371 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+ + Y + T +Q + L+ KD+ AQTG+GKT AF L + A N + + Sbjct: 12 ILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALP-SLDHFARNPKPT 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L ++PTRELA Q+ + + V V GGV ++R+ R L G IVV Sbjct: 71 PLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRALGRGVDIVVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D I + I + VLDEAD+M+D+GF ++ I PK+R+ L FSAT+ Sbjct: 131 TPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQNLFFSATMP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + D V+V++A ++ + +A V ++ + +R A++F Sbjct: 191 GEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEKQALLNLTIRSEDIDRALIF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ R + L Q VA+ G SQ +R+ ALQ R G ++ +ATD+AARGID+ Sbjct: 251 TRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVATDIAARGIDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + VI+ EL + PE +HR GRT RAG +G+++ + + + + + R V + Sbjct: 311 SGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIERTTKVKLDVV 370 Query: 371 PAPS--VEAIR 379 P P VEA+R Sbjct: 371 PLPENFVEAVR 381 >gi|254443370|ref|ZP_05056846.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] gi|198257678|gb|EDY81986.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] Length = 469 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 190/345 (55%), Gaps = 12/345 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ A++ +GY + +Q + L +DVL AQTG+GKT AF L L L Sbjct: 10 PEIV-SAVTAKGYTEPSPIQAKAIPAILEGRDVLGGAQTGTGKTAAFSLPLLQRLSESEF 68 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 +N R P AL +APTRELA QV + + Y K + + C GGV+++ + L+ Sbjct: 69 KNKR------PRALILAPTRELAAQVHQSI-LDYGKGVDLHSACFFGGVNINPQISKLRR 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I+V TPGRL D + + N+ ++ +VLDEAD MLD+GF DI IL P R+ L Sbjct: 122 GLDIIVATPGRLLDLCQRREANLGAIETLVLDEADRMLDMGFIHDIRKILKLLPHDRQNL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 FSAT + + LA + ++ V V +A N I A + ++ A+ N+++ Sbjct: 182 FFSATYAKDVKKLADSILRNPVEVEVAPRNSTADQIAQEAYSIGQKNKREALSNLIKDGD 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K +VF T+ +R K L A+ G SQ R ALQ + RV +ATD+ Sbjct: 242 WKQVLVFTRTKHGANRLAKQLDSDGITAAAIHGNKSQSARERALQDFKTNYIRVLVATDI 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ DL V++ EL + PE+ +HR GRTGRAG+KG ++ ++ Sbjct: 302 AARGIDIIDLPHVVNFELPNIPEDYVHRIGRTGRAGKKGKAISLV 346 >gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383] gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383] Length = 516 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 142/400 (35%), Positives = 212/400 (53%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------- 58 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 45 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 103 Query: 59 -------ASTLLAENDRFS----PASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 A + DR + P + P L + PTRELA+QV G+ L+ L Sbjct: 104 TQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAATTYGKHLKRLRTV 163 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDIE I+ ++P+ R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 218 LDMGFIDDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 275 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ F+ AL G+ Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 AGR G +V ++ Q +R ER R NV +EP Sbjct: 396 AGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEP 435 >gi|41407579|ref|NP_960415.1| hypothetical protein MAP1481c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395932|gb|AAS03798.1| hypothetical protein MAP_1481c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 497 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 191/365 (52%), Gaps = 4/365 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P I +AL+ RG + +Q L L +DVL +TGSGKT+AF + L L Sbjct: 54 GVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVGRLSTG 113 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N R PA P L +APTRELA Q+ LE L A G+ V+ GGVS HR+ L+ G Sbjct: 114 NRR--PAR-PTGLVLAPTRELATQITATLEPLAAACGLRVSTIFGGVSQHRQVTALKAGV 170 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL D +R + + + ++ V+DEAD M DLGF + IL ++P + L+F Sbjct: 171 DIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRLLF 230 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + +DAV ++ N S++ + V +V+ L G Sbjct: 231 SATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHVFHVDSVQAKKELVHRL-ASGTG 289 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + + L E V L G LSQ R L M G ARV +ATD+AA Sbjct: 290 RRILFLRTKHQARKVARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLVATDIAA 349 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + ++ELV+H + S ++ LHRSGRT RAG G V V+ + L R+A + Sbjct: 350 RGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRALMRKAGI 409 Query: 366 SVVWE 370 V + Sbjct: 410 DVAPQ 414 >gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 518 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 131/408 (32%), Positives = 218/408 (53%), Gaps = 16/408 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A ++ G+ T +QE + + +D++ AQTG+GKT AF + + L Sbjct: 13 IIKATADMGFEEATPIQEKTIPVAMAGRDIIGQAQTGTGKTAAFAIPMIENLERH----- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A L + PTRELAVQV E+ + G+ GG ++R+ R L+N I+VG Sbjct: 68 -AEGIGGLVVTPTRELAVQVAEEINKIGQFKGIHAQPIYGGQDINRQIRALRNRPQIIVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+R + + H+ VLDEADEML +GF +DIE IL K + L+FSAT+ Sbjct: 127 TPGRLMDHMRRHTIRLDHVSMAVLDEADEMLSMGFIEDIESILGEIQHKHQTLLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +I L+K + + ++I ++ + + V + + + + +L AIVF Sbjct: 187 QSILNLSKRFMLEPEFISIKAKEVTVPNTEQYYVELPERQKFDVLCRLLDIQSPDLAIVF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V + L + + + G+L+Q R + L+ ++G + +ATDVAARG+D+ Sbjct: 247 GRTKRRVDELYEALNKRGYSAEGIHGDLTQLRRDSVLRHFKEGVTDILVATDVAARGLDI 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFREANVSV 367 + + + ++ +PE+ +HR GRTGRAG+ G++V FV P+ N R E++ + + Sbjct: 307 SGVTHIYNFDIPQDPESYVHRIGRTGRAGKTGLAVTFVTPRELNHLRLIEQVTKR---RI 363 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK---MVDVLLAKHD 412 V +P P++ + E QR+ D L S + ++ + D LLA +D Sbjct: 364 VRKPMPTIHEVLE-GQQRLAVDLLMKASEDPESRRYTELADELLASND 410 >gi|313807189|gb|EFS45682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2] gi|313819383|gb|EFS57097.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2] gi|313820647|gb|EFS58361.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1] gi|313825517|gb|EFS63231.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1] gi|314924891|gb|EFS88722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3] gi|314978145|gb|EFT22239.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2] gi|314986302|gb|EFT30394.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2] gi|315088606|gb|EFT60582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1] Length = 564 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 64 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 183 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH + VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407 >gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium OB3b] gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium OB3b] Length = 419 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 11/367 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + A+ GY T +QE + P L+ +D+L AQTG+GKT AF L + L R Sbjct: 10 QKVLAAVETSGYTQPTPIQEQAIPPALQGRDILGIAQTGTGKTAAFVLPMLCRLEQGRAR 69 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P L + PTRELA QV A + VA+ IGG++ + + GA ++ Sbjct: 70 ---ARMPRTLILEPTRELAAQVEASFAKYGANHKLNVALLIGGMAFGDQEAKIMRGADVL 126 Query: 129 VGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 + TPGRL D RGK L +++++ +V+DEAD MLD+GF DIE I P R+ L FSA Sbjct: 127 IATPGRLLDFFDRGK-LLLTNIEILVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILR-YHG 243 T+ P IT L + + + VR+ +A + + I R LVA +++ + +LR Sbjct: 186 TMPPEITRLTEAFLHNPVRIEVARASSTAATI--RQALVATHGHAEKRETLRRLLRGAEN 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 KNAI+FC+ + V+ + L +H F AL G++ Q R +L ++G + + +DV Sbjct: 244 FKNAIIFCNRKRDVAILHRSLDKHGFSAGALHGDMDQPARMASLDAFKNGDVALLVCSDV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+PD+ V + ++ ++ E+ +HR GRTGRAGR G +V ++ ++ +++ Sbjct: 304 AARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGTAVTLVTGEDRKYLDQIETLI 363 Query: 364 NVSVVWE 370 + WE Sbjct: 364 GNKIDWE 370 >gi|167619557|ref|ZP_02388188.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4] Length = 454 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 54 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 112 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 113 AQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 172 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 173 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 226 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 227 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 286 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 287 QTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 346 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 347 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 406 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 407 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 444 >gi|47570033|ref|ZP_00240694.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] gi|47553285|gb|EAL11675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus G9241] Length = 451 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + + E Sbjct: 9 ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 68 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE + I+ R + + +A+ ++ Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 303 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 356 >gi|307720439|ref|YP_003891579.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978532|gb|ADN08567.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica DSM 16294] Length = 518 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/398 (32%), Positives = 207/398 (52%), Gaps = 8/398 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ + +Q + L +D++ A TG+GKT AF L + S + + S + L Sbjct: 38 GFTIPSPIQAQAIPIILEGRDMVGQAHTGTGKTAAFSLPVLSNMKLD------GSVEM-L 90 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 I PTRELA QV E+ GV GG S R+ + GA +VV TPGR+ D Sbjct: 91 VITPTRELATQVSDEIFKYGRNLGVKTVTVYGGSSYKRQLDLIGRGASVVVATPGRMLDL 150 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ LN VVLDEADEMLD+GF DDI I P R+ L+FSAT+ I LA Sbjct: 151 LKRNMLNNFAPSVVVLDEADEMLDMGFLDDINEIFSYLPTNRQTLLFSATMPQPIKNLAN 210 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 KD V+I ++DI+ ++ +RD+AI+ ++ K A+VFC T++ V Sbjct: 211 RILKDPAFVSITKGETTNTDIEQEYYVIDEHERDDAIIRLMDAEDTKKAVVFCRTKSEVD 270 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 R + VL+ + L G++ Q++R ++ ++ +V +ATDVAARGI + ++ V + Sbjct: 271 RLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKNDSVKVLVATDVAARGIHVNNISHVFN 330 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378 + +PE+ +HR GRTGRAG KG ++ ++ + +R+ ++ S+ PS + Sbjct: 331 YHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKQKVGTSMNHAFVPSKNDL 390 Query: 379 RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416 + ++++ + I + K++D L D E I Sbjct: 391 KASTVDKMVKS-IEDQKIYDEAHKVLDRLKEDIDEETI 427 >gi|212633329|ref|YP_002309854.1| ATP-dependent RNA helicase RhlB [Shewanella piezotolerans WP3] gi|226739551|sp|B8CHZ1|RHLB_SHEPW RecName: Full=ATP-dependent RNA helicase rhlB gi|212554813|gb|ACJ27267.1| Helicase, DEAD box [Shewanella piezotolerans WP3] Length = 437 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/352 (35%), Positives = 201/352 (57%), Gaps = 11/352 (3%) Query: 2 KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F + P + + +AL+E G+ T +Q L L +KD+ AQTG+GKT+AF +A Sbjct: 9 KKFADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKTLAFLVATF 68 Query: 60 STLLAENDRFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 + LL E +P + P A+ +APTRELA+Q+ ++ L TG+ V + GG Sbjct: 69 NHLLTEA---APTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYE 125 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 +R+ L G I++GT GR+ D++R +++S ++AVVLDEAD M DLGF DI F+ Sbjct: 126 AQRKVLDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFDLGFIKDIRFLFRR 185 Query: 176 SP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 P K R ++FSAT+S + LA ++ + +V IA + +I ++ ++ Sbjct: 186 MPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMP 245 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 ++++L + AIVF +T+ S + L +V L+G++ Q++R L+ G Sbjct: 246 LLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILEQFTSG 305 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V +ATDVAARG+ + D+ V + +L + E+ +HR GRTGRAG+KG+SV Sbjct: 306 DIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSV 357 >gi|114563615|ref|YP_751128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334908|gb|ABI72290.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 451 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/343 (37%), Positives = 192/343 (55%), Gaps = 6/343 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L G T VQ L L KD++ S++TGSGKT+AF L +++ R Sbjct: 14 DSLKHLGISTPTDVQAQALPIALSGKDLMASSKTGSGKTLAFLLPAMQRVIST--RALSK 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV +L L A T +GG + + + + L H +V TP Sbjct: 72 KDPRVLILLPTRELAQQVYGQLRLLVANTQYKAISVLGGENFNDQAKALARDPHFIVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISP 191 GR+ DH++ + L ++ L+ +VLDEAD MLDLGF ++ I D++ KRR LMFSAT+ Sbjct: 132 GRIADHLQQRHLYLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLMFSATLDH 191 Query: 192 -AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIV 249 +I +A K V+I +H DI+ R +LV D A++ +IL K IV Sbjct: 192 NSIGDIATTLLKSPSHVSIGESYTEHKDIEQRIILVDHLDHKQAVLQHILSQETHKQVIV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +TR+ R +LA F ALSG+L Q R+ + G++++ + TDVA+RG+D Sbjct: 252 FTATRSDTDRLATLLAAQGFATSALSGDLKQSARNQIMDQFARGQSQILVTTDVASRGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 L ++ LVI+ ++ E +HR GRTGRAG KG +V FV P++ Sbjct: 312 LINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSFVGPKD 354 >gi|38233323|ref|NP_939090.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199582|emb|CAE49235.1| Putative ATP-dependent RNA helicase [Corynebacterium diphtheriae] Length = 436 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 179/340 (52%), Gaps = 2/340 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+ G ++QE L L +D++ A+TG GKT FG+ L + D Sbjct: 19 ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFDAADVAE 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA QVG +L+ L + VA GG + L++G +VVG Sbjct: 79 LDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVDVVVG 138 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L + H+ +VLDEADEMLDLGF DIE +L + + ++FSAT+ Sbjct: 139 TPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPHQTMLFSATMP 198 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAI 248 A+ TLA+ + V + + V+ D + V IL+ G I Sbjct: 199 GAVVTLARTFMHHPVHIRAEDTGAAQTHASTTQVIFQAHRMDKSAVTARILQAEGRGKTI 258 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + LA+ F+V + G+L Q R +L R G+A + +ATDVAARG+ Sbjct: 259 IFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILVATDVAARGL 318 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ D+ VI+ + +P +HR GRTGRAG G +V ++ Sbjct: 319 DIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLV 358 >gi|332675736|gb|AEE72552.1| DEAD-box ATP-dependent RNA helicase CshA [Propionibacterium acnes 266] Length = 564 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 64 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 183 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH + VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407 >gi|296129739|ref|YP_003636989.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] gi|296021554|gb|ADG74790.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM 20109] Length = 581 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 167/574 (29%), Positives = 265/574 (46%), Gaps = 81/574 (14%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ G+ T VQ + L +DV+ AQTG+GKT AFGL L ++ + Sbjct: 24 PRVL-SAVHGLGFTAPTPVQAQTIPALLAGRDVVGVAQTGTGKTAAFGLPLLQSVDPD-- 80 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126 +A + + PTRELA+QV L A G+ V GG ++R L GA Sbjct: 81 ----VAAVQVVVLTPTRELAMQVADALTSFAADMPGLQVVAVYGGSPYLPQQRALARGAQ 136 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DHI + L + ++ +VLDEADEML +GF +D++ +L +P R++ +FS Sbjct: 137 VVVGTPGRVIDHIDRRTLRLDDVRMLVLDEADEMLRMGFAEDVDKVLSGTPAGRQVALFS 196 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I +A + + V V ++ ++ + +V + A+ +L A Sbjct: 197 ATMPPQIRRVADQHLVNPVSVAVSRQSSTVESVRQTYAVVPYRHKAGALARVLAVSDADA 256 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF TR + VL + +SG+++Q +R ++ +R G V +ATDVAAR Sbjct: 257 AIVFVRTREAAEEIGNVLVQRGIAAAHISGDVAQADRERIVERLRSGTLDVLVATDVAAR 316 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREA 363 G+D+ + LV++ +L PE +HR GRTGRAGR G ++ FV P R+ ER R Sbjct: 317 GLDVERIGLVVNLDLPREPEAYVHRIGRTGRAGRTGEALTFVTPSERPRLRQIERTTRTP 376 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 V + V A R LL + D ++AAG L + Sbjct: 377 LVEITIPTPAQVSAHR------------------------ATALLGRTD-ARLAAGRLDV 411 Query: 424 HRAG----LCAPEEITPVSLVS-------------------------GRDRFRDDSRAFK 454 R L A ++ PV L++ R+ +++R + Sbjct: 412 VRTAVLEHLAAHPDVDPVDLLTAVAALAVGDEGPSAEVEYLDDAVRRARETRHEETRGGQ 471 Query: 455 VGGGSR----DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510 V G R G + ++VG + + L+ L G+ + +G I + Sbjct: 472 VAGNRRRPGTTGPSGRPRYRVAVGERDGLQPGALVGALTGEGGLTGKDVGKIDIFGSFAL 531 Query: 511 VEV----SADGVDLLRRT--------VKLDKGIQ 532 V++ + + VD L RT ++LD G Q Sbjct: 532 VDIPSGLTPEVVDRLGRTRVAGRPLRIRLDTGPQ 565 >gi|229007762|ref|ZP_04165353.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4] gi|228753532|gb|EEM02979.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4] Length = 481 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/370 (32%), Positives = 195/370 (52%), Gaps = 16/370 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ Y T VQ ++ L +KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELAVQV ++ + + G R++ +L+ HIVVGTPG Sbjct: 73 -PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFVRQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI ++ LK +V+DEADEML++GF D +E I+D P R ++FSAT+ + Sbjct: 132 RVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+ Y K + I + I++ + V ++ + + +I + I+FC T Sbjct: 192 ENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + + G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE-- 370 VI+ ++ E+ +HR+GRTGRAG G ++ FV P ER E + +E Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYE-----ERFLVEIEEYIGFEIQ 366 Query: 371 --PAPSVEAI 378 APS E + Sbjct: 367 KIEAPSKEEL 376 >gi|120554694|ref|YP_959045.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter aquaeolei VT8] gi|120324543|gb|ABM18858.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8] Length = 423 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 216/386 (55%), Gaps = 20/386 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----ALAST 61 N+ + + +A+S+ G+ T +Q L L +D++ AQTG+GKT AF + +L T Sbjct: 17 NLDKRLLDAISKIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSLLET 76 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + E +RF AS P LA+APTRELA+Q+ ++ E L TG V +GG++ ++R L Sbjct: 77 PIDEKERF--ASEPRVLALAPTRELAMQIAKDAEQLCHYTGHNVVTVVGGMNYDKQREQL 134 Query: 122 QNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPK- 178 QN I+V TPGRL D + + + + L ++LDEAD MLD+GF D++ I+ +PK Sbjct: 135 QNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTPKD 194 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT + + LA + ++A V I E + ++ LV+ +++ +VN Sbjct: 195 ERQTLLFSATFNQDVLNLASMWTRNAEFVEIEPEQKTAERVEQTVFLVSDNEKLPVLVNY 254 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ + AIVF + R + L +V +SGE++Q +R L + G+ +V Sbjct: 255 LKRPEVEKAIVFANRRDQCRDLEEDLKNQGVKVALMSGEIAQNKRLKTLDQFKKGQIQVL 314 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350 +ATDVA RGI + + V + L N E+ +HR GRTGRAG+ G+SV F +P+ Sbjct: 315 VATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKTGVSVSFAGEEDAFALPE 374 Query: 351 NMQRRAERL---FREANVSVVWEPAP 373 + +++L + N++V + P Sbjct: 375 IEKYISQKLKTAVPDENLTVAMDNPP 400 >gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46] gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46] Length = 454 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/341 (36%), Positives = 184/341 (53%), Gaps = 3/341 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL++ G ++QE L L D++ A+TG GKT+ FG+ L + + Sbjct: 18 ICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLGFGVPLIDRVFDDARIPE 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A+ I PTREL VQVG +L T + V GG + L G I+VG Sbjct: 78 PDGTARAIIIVPTRELCVQVGEDLARAAHSTNLRVCTIYGGRPYEEQIEQLDRGVDIIVG 137 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L +S +K +VLDEADEMLDLGF DIE IL + P +R+ ++FSAT+ Sbjct: 138 TPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDIEKILAAVPDERQTMLFSATMP 197 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGAKNA 247 I TLA+ + V + S + + + +V S D+ + I IL+ +G Sbjct: 198 GPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVFQSHQMDKVSVIARILQANGRGRT 257 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + + L E F V A+ G++ Q R +L R+G V +ATDVAARG Sbjct: 258 IIFARTKRGAASVAEQLGERGFLVTAVHGDMGQPARERSLTAFRNGDVDVLVATDVAARG 317 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ID+ D+ VI+ ++ + +HR GRTGRAG G++V ++ Sbjct: 318 IDIDDVTHVINHQVPDDEMTYVHRIGRTGRAGHSGVAVTLV 358 >gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium ATCC 35110] Length = 431 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 192/349 (55%), Gaps = 14/349 (4%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE+I P ++ AL E GY T++Q A + + KD+L +AQTG+GKT AF L + Sbjct: 6 FESISLNPSIL-RALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPILH 64 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE----WLYAKTGVVVAVCIGGVSVHR 116 L EN + AP AL + PTRELA+Q+ + +L +TGV+ +GGV H Sbjct: 65 RL-GENRSYD-IRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVI----MGGVPAHP 118 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + + L+ I+V TPGRL D + + ++ VLDEAD MLD+GF DDI I Sbjct: 119 QIKMLRRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQ 178 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 P+ + L+FSAT+SP I LA ++ VR+ +A + +I + + V +++ + Sbjct: 179 PRDHQTLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLH 238 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 N+ + + K A+VF T+ + + L A+ SQ+ R AL + G+ Sbjct: 239 NLFKENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKIN 298 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V +ATD+AARGID+ + VI+ EL +PEN +HR GRT RAG G ++ Sbjct: 299 VLVATDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTAL 347 >gi|312963578|ref|ZP_07778059.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6] gi|311282087|gb|EFQ60687.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6] Length = 628 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 191/341 (56%), Gaps = 8/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V PGRL D +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FSA Sbjct: 133 LVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSA 192 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S IT LA + R+ + N I+ R +A S + + + +++ + + Sbjct: 193 TFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLLAHLITHGAWEQV 252 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AARG Sbjct: 253 LVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVRILVATDIAARG 312 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 313 LDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|190573992|ref|YP_001971837.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia K279a] gi|190011914|emb|CAQ45535.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia K279a] Length = 458 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/379 (34%), Positives = 201/379 (53%), Gaps = 15/379 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + L GY LT VQ L L +DV+ A TGSGKT AFGL L Sbjct: 1 MTDFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILNGRDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 ++ R AL + PTRELA QVG+++ L TG+ + V Sbjct: 61 LQSIDPSLIRVQ------ALVLCPTRELADQVGKQIRKL--ATGIPNLKLLLLVGGVPLG 112 Query: 119 RDLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 L + H+VVGTPGR+ + R + LN+ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEGHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAG 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 + K R+ L+FSAT +I +A++ +DAV V + + Q I + V + R A Sbjct: 173 RTHKDRQSLLFSATFPDSIRAMARDLLRDAVEVTVEGAD-QAPAIRHLFCEVEPAHRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L + ++A+VFC+TR V L + F +AL G++ Q++R L ++ + Sbjct: 232 LAGLLLKYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL VI+ EL ++ E+ HR GRTGRAG G+++ ++ + Sbjct: 292 CNVLVASDVAARGLDVEDLAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKT 351 Query: 355 RAERLFREANVSVVWEPAP 373 RAE + + + W+ P Sbjct: 352 RAEAIEAQMGQPLDWQKTP 370 >gi|145298647|ref|YP_001141488.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851419|gb|ABO89740.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida subsp. salmonicida A449] Length = 431 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 197/354 (55%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ A+S+ GY +T VQ + R DVL SAQTG+GKT AF L + L+ Sbjct: 6 FDFAPEIL-RAVSDCGYQEMTPVQRQAIPTIRRGLDVLASAQTGTGKTAAFALPILQRLV 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + P++A + L + PTRELA QV + V V +GG + + L+ Sbjct: 65 DKPAELQPSNARV-LILTPTRELAAQVASNINDFAKYLDVTVLTLVGGGKQDVQAKKLKA 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GAHI+V TPGRL +H+ L++S ++ +VLDEAD +LD+GF D++ IL + K+R+ L Sbjct: 124 GAHIIVATPGRLLEHLTACNLSLSGVECLVLDEADRILDMGFSADVQQILQAVNKERQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240 +FSAT S + LA N D + I S N+Q+S D + V + + ++ Sbjct: 184 LFSATFSDGVKKLA-NVMLD--KPQIISVNKQNSTADTVTHTVYPVEQKRKRELLSELIG 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +VF STR S L + + G+ +Q R AL+ +G+ RV +A Sbjct: 241 KQNWPQVLVFASTRESCDELVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+PDL+ V++ +L E+ +HR GRTGRAG+ GM++ + + +R Sbjct: 301 TEVAARGLDIPDLQYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEER 354 >gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3] gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3] Length = 510 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/343 (37%), Positives = 180/343 (52%), Gaps = 4/343 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+ GY T +QE + ++ KD+L AQTG+GKT AF L + L AEN R +P Sbjct: 29 QALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILHRL-AEN-RIAPK 86 Query: 73 S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L ++PTRELA Q+G + A G VAV GGV + R LQ G I+V Sbjct: 87 PRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQERALQQGLDILVAA 146 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI+ K L++S + +VLDEAD+MLDLGF I I+ P KR+ L FSAT+ Sbjct: 147 PGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFFSATMPT 206 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA KD V+V + ++ I V V + + + +VF Sbjct: 207 EIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEMFSDPEYTRCLVFT 266 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + A+ G SQ +R L + G+ RV +ATD+AARGID+ Sbjct: 267 KTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVLVATDIAARGIDVD 326 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + V++ EL PE +HR GRT RAG G ++ FV M+ Sbjct: 327 GVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMK 369 >gi|24372485|ref|NP_716527.1| ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1] gi|24346478|gb|AAN53972.1|AE015534_11 ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1] Length = 458 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/331 (38%), Positives = 188/331 (56%), Gaps = 7/331 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E LS GY +T +Q L L +DV+ +TGSGKT AFGL L + L + R Sbjct: 14 ENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L + PTRELA QV +E+ L V V GGV + + L++GAHI+VGT Sbjct: 72 ----TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ DH+ L++S+L +VLDEAD ML++GF+ ++ I++ SP++R+ L+FSAT Sbjct: 128 PGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPE 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I ++AK + V V A + +++ + L R A+ +L H ++A+VFC Sbjct: 188 QIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPESAVVFC 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + L F V+AL G+L Q++R L + A V +ATDVAARG+D+ Sbjct: 248 NTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDID 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 L+ V + ++ + E +HR GRTGRAG KG Sbjct: 308 ALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338 >gi|321399692|emb|CAJ06994.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania major strain Friedlin] Length = 592 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 183/338 (54%), Gaps = 4/338 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P I +A + G+ T +Q L +D++ A+TGSGKT+AF + A ++A+ Sbjct: 153 PDAIHQAFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAALHIMAQPP 212 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 P P+AL +APTRELAVQ+ E + ++ C+ GG ++R L+ G H Sbjct: 213 -LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQQRALRAGVH 271 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 + + TPGRL D + N+ + + LDEAD MLD+GF D I I R+ LMFS Sbjct: 272 VCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTDRQTLMFS 331 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I LA ++QKD VRV+I SE ++D+ +V ++ + ILR G + Sbjct: 332 ATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKMEEILRQVGPQ 391 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ S L L Q V+A+ G+ Q R L R + +ATDVA Sbjct: 392 RVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERAILVATDVA 451 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 ARG+D+ DL++V++ ++ N E+ +HR GRTGRAG+ G Sbjct: 452 ARGLDIKDLDVVVNYDMPLNIEDYVHRIGRTGRAGKTG 489 >gi|284046175|ref|YP_003396515.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684] gi|283950396|gb|ADB53140.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM 14684] Length = 460 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/336 (36%), Positives = 191/336 (56%), Gaps = 8/336 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++RG +QE ++ L DVL+ + TGSGKT+AFG+ L + A + R Sbjct: 17 ALTKRGIATAFPIQELVVPDVLAGHDVLIQSPTGSGKTLAFGVPLMDRIEATDKR----- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL +APTRELA+Q+ E + + + GGV + R+ R+ +HI+V TPG Sbjct: 72 -PSALVLAPTRELALQIVDETREIAHARALSITAVYGGVGLERQARNAAR-SHILVATPG 129 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D ++ + ++++K ++LDEAD MLD+GFR ++ I+ ++ R+ ++FSAT+ + Sbjct: 130 RLEDLLQRRAFTLANVKLLILDEADRMLDMGFRPAVDRIVKATNANRQTMLFSATLKGEV 189 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +A Y DA R +A + +DID+R + V + + +V LR+HG +VF T Sbjct: 190 DRIANEYTHDARRHELAPAPERVADIDHRFLPVLHEHKLDHLVQELRHHGRGLTLVFVRT 249 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R K L + VA+ G+ +Q +R AL G V +ATDVAARGID+ + Sbjct: 250 KRGADRLVKRLRAQNVESVAMHGDKTQGQRERALSRFERGEVDVLVATDVAARGIDVNGV 309 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348 VI+ + + E +HR GRTGRAG G+ V FV+ Sbjct: 310 SHVINFDAPEDREGYVHRIGRTGRAGATGIGVTFVM 345 >gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43] Length = 475 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 143/398 (35%), Positives = 207/398 (52%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----------- 56 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 48 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 106 Query: 57 --ALASTLLAEND-------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 AL E R P + P L + PTRELA+QV G+ L L Sbjct: 107 TQALQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 166 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 167 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 220 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 221 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 280 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 281 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 340 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 341 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 400 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 401 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 438 >gi|312963542|ref|ZP_07778024.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens WH6] gi|311282348|gb|EFQ60947.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens WH6] Length = 423 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 192/339 (56%), Gaps = 12/339 (3%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L+ D++ A+TGSGKT AFG+ L + + N R+ A L + PTRELA QV +E+ Sbjct: 3 LKGLDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA---LVMCPTRELADQVAKEI 56 Query: 95 EWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153 L A+ + V GGVS+ + L++GAH++VGTPGR+ H+R L + L ++ Sbjct: 57 RRLARAEDNIKVLTLCGGVSLGPQIASLEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLI 116 Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213 LDEAD MLD+GF D IE I+ +P +R+ L+FSAT +I LA + + +V + Sbjct: 117 LDEADRMLDMGFYDAIEDIISKTPPRRQTLLFSATYPVSIKQLASKFMRAPQQVKAEAF- 175 Query: 214 RQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271 HSD I+ R ++ +R +A+ +L + + + FC T+ V L Sbjct: 176 --HSDDQIEQRFYEISPEERMDAVTKVLAHFRPASCVAFCFTKQQVQETVDHLTAKGICA 233 Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331 V L G+L Q++R L M + V +ATDVAARG+D+ L++VI+ EL+ + E +HR Sbjct: 234 VGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDALDMVINVELARDSEIHIHR 293 Query: 332 SGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 GRTGRAG G+++ ++ + RA+ + + + W+ Sbjct: 294 VGRTGRAGETGIAISLVAPSEAHRAQAIEQLQKSPLNWD 332 >gi|291447570|ref|ZP_06586960.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998] gi|291350517|gb|EFE77421.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998] Length = 458 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 189/349 (54%), Gaps = 16/349 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G + +QE L L DV+ A+TG+GKT+ FGL L + D R Sbjct: 15 EALEAVGITSPFPIQELTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 74 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AP AL + PTREL QV +L V V GG + + L+ G Sbjct: 75 AKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 134 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGRL D + L++SH++ +VLDEADEMLDLGF D+E I+ P KR+ ++F Sbjct: 135 DVIVGTPGRLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLF 194 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239 SAT+ A+ +LA+ Y +N S + + + + YRA + D+ + IL Sbjct: 195 SATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTVQHVYRAHNM---DKPEMLARIL 251 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G A++FC T+ + + + L + F A+ G+L Q R AL+ R+G+ V + Sbjct: 252 QADGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 311 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ + V++ + + + LHR GRTGRAG KG+++ ++ Sbjct: 312 CTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITLV 360 >gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158] gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158] Length = 523 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 143/400 (35%), Positives = 212/400 (53%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----------- 56 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 55 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 113 Query: 57 ALASTLLAEND---------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 A A A + R P + P L + PTRELA+QV G+ L+ L Sbjct: 114 AHAQQPRAPREAGQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 173 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 174 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 227 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDIE I+ ++P R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 228 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 285 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ F+ AL G+ Sbjct: 286 IAQTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 345 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 346 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 405 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 AGR G++V ++ Q +R ER R NV +EP Sbjct: 406 AGRSGIAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEP 445 >gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1] Length = 449 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 16/363 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL G+ T +Q + P L+ +D+L +AQTG+GKT F L L L E + + A Sbjct: 14 KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 ++ AL + PTRELA QV + + AV GGVS++ + L+ G I+V TP Sbjct: 73 NSVRALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGGDILVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D R + + L+A+VLDEAD MLDLGF +++ + + P+KR+ L+FSAT S A Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I TLA+ +D + + ++ N + V V + ++L+ + + A+VF Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQTNRWRQALVFAK 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR SV +L ++ G+ Q R ALQ + G + +ATDVAARG+D+ + Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357 + LV++ +L E+ +HR GRTGRAG G +V +I Q +QRR E Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372 Query: 358 RLF 360 F Sbjct: 373 PDF 375 >gi|291437415|ref|ZP_06576805.1| helicase [Streptomyces ghanaensis ATCC 14672] gi|291340310|gb|EFE67266.1| helicase [Streptomyces ghanaensis ATCC 14672] Length = 463 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/346 (36%), Positives = 184/346 (53%), Gaps = 10/346 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G + +QE L L DV+ A+TG+GKT+ FGL L + D R Sbjct: 16 EALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPVDVEAGR 75 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AP AL + PTREL QV +L V V GG + + L+ G Sbjct: 76 AKPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALKKGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D K LN++H+KA+VLDEADEMLDLGF D+E I++ P +R+ ++F Sbjct: 136 DVVVGTPGRLLDLAGQKKLNLAHVKALVLDEADEMLDLGFLPDVEKIINLLPVRRQTMLF 195 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYH 242 SAT+ A+ LA+ Y + + + + + + V + D+ + IL+ Sbjct: 196 SATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTKQFVYRAHNMDKPEMVARILQAE 255 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G A+VFC T+ + + L + F A+ G+L Q R AL+ R+G+ V + TD Sbjct: 256 GRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 315 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI+ + + LHR GRTGRAG KG ++ ++ Sbjct: 316 VAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLV 361 >gi|237746640|ref|ZP_04577120.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS] gi|229377991|gb|EEO28082.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS] Length = 461 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 135/401 (33%), Positives = 215/401 (53%), Gaps = 35/401 (8%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA--- 57 FE + P ++ +AL+ Y T VQ + + KD+LVS+QTGSGKT AF L Sbjct: 3 FETLGLHPSIL-KALAGIHYDIPTPVQTKAIPLAIEGKDLLVSSQTGSGKTAAFMLPALH 61 Query: 58 -LASTLLAENDRFSP-----------------ASAPLALAIAPTRELAVQVGRELEWLYA 99 A+ ++E + +P A+ P L + PTRELA+Q+ E A Sbjct: 62 RFATQKISETSQKTPNQQRQSAKAKGERARFKAAQPKMLVLTPTRELALQIVSSTEQYSA 121 Query: 100 --KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 K VA+ +GG+ ++ + L I+V TPGRL DH++ + L+ +VLDEA Sbjct: 122 CLKHFRTVAI-LGGMPYPKQMQLLARNPEILVATPGRLIDHMQSGKIRFDQLEILVLDEA 180 Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217 D MLD+GF DDIE ++ ++P R+ ++FSAT+ + +A++ DA ++I S +H Sbjct: 181 DRMLDMGFIDDIETVIAATPATRQTMLFSATLDGIVGKMARSVTHDAESIHITSSASRHE 240 Query: 218 DIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 +I+ V L ++ + + L+ A+VF +T+ LA F AL G Sbjct: 241 NIEQMIHYVDDLPHKNRLLAHWLQDRSLGQALVFTATKRDADLVADRLAIAGFSTAALHG 300 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 ++ Q R+ L +RDG+ ++ +ATDVAARGID+P + V + +L PE+ +HR GRTG Sbjct: 301 DMPQNARNRTLAKLRDGKVKILVATDVAARGIDIPSITHVFNYDLPKFPEDYVHRIGRTG 360 Query: 337 RAGRKGMSVFVIPQN---MQRRAERLFREA---NVSVVWEP 371 RAGR G+++ ++ + +R ER ++ NV +EP Sbjct: 361 RAGRHGLAISLVSHSDSASMKRIERFTKQTIPVNVIEGFEP 401 >gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881] gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881] Length = 551 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 219/387 (56%), Gaps = 21/387 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+V+ A++ +G+ + +Q + L D+L AQTG+GKT AF L L + Sbjct: 13 LPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLA------ 66 Query: 67 DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 R PA P L +APTRELA+QV E +AK G+ V GG + + L+ Sbjct: 67 -RLDPALREPQMLILAPTRELAIQVATACEE-FAKDIKGLQVLPIYGGGEYRTQLKGLRG 124 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA ++VGTPGR+ DH+ + +++LKA+VLDEADEML +GF DD++++L+ +P ++ Sbjct: 125 GAQVIVGTPGRVMDHMERGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLA 184 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ P I +A + K V I + + I R VA ++ +A+ IL Sbjct: 185 LFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEAE 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +VF T+ + + L + AL+G++ QQ+R +Q ++D R + IATD Sbjct: 245 EHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLLIATD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERL 359 V ARG+D+P + V++ ++ +PE +HR GRTGRAGR+G ++ + Q++ R+ ER+ Sbjct: 305 VVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLRQIERI 364 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI 386 R+ S+ PSV+ + +A+RI Sbjct: 365 TRQ---SIEKMALPSVDDL---NAKRI 385 >gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] Length = 432 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/332 (37%), Positives = 180/332 (54%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GYV T +Q + L +D+L AQTG+GKT +F L L L A R +P + Sbjct: 21 ALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALPLLHRL-AATPRPAPKN 79 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L +APTREL Q+ E V V GGVS + + L+ G I+V PG Sbjct: 80 GARVLVLAPTRELVSQIADGFESFSRHQPVRVTTIFGGVSQVHQVKALEEGVDIIVAAPG 139 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D I ++S L+ +VLDEAD+MLD+GF IE I+ + P+ R ++FSAT+ +I Sbjct: 140 RLLDLIEQGLCDLSQLETLVLDEADQMLDMGFAKPIERIVATLPEDRHTVLFSATMPKSI 199 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L ++ ++ +V IA + I + + SD+ A++ LR G A+VF Sbjct: 200 AALVESLLRNPAKVEIAPPSSTVDRIAQSVMFLNASDKKAALLAQLRTPGIGQAVVFTLQ 259 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L E AL G SQ +R AL R+G +V +ATD+AARGID+ + Sbjct: 260 KNIANDVCTFLTESGITAEALHGNRSQGQRERALNAFREGDVQVLVATDIAARGIDVDTV 319 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VI+ +L S PE+ +HR GRTGRAGR G ++ Sbjct: 320 THVINHDLPSLPESYVHRIGRTGRAGRSGFAI 351 >gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] Length = 495 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 187/351 (53%), Gaps = 7/351 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 I +A+ +GY + +Q + + KDV+ +AQTG+GKT F L L L + +F Sbjct: 12 ILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSKGQKLKF 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A L + PTRELA QV +E + V GGV + + + L+ G ++V Sbjct: 72 NQVRA---LILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRLRKGVDVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI+ IL+ PK R+ L+FSAT Sbjct: 129 ATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILNKLPKNRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V +++A+ N ++ +V + + + +++ + K +V Sbjct: 189 SDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKKARVLTKLIKDNDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L E A+ G SQ R+ AL + G+ RV +ATD+AARG+D Sbjct: 249 FSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVLVATDIAARGLD 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 + L VI+ +L PE+ +HR GRTGRAG G ++ + ++ A LF Sbjct: 309 IEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSED---EASELF 356 >gi|78048143|ref|YP_364318.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036573|emb|CAJ24264.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 458 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 140/413 (33%), Positives = 213/413 (51%), Gaps = 16/413 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P L+ DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPAVTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + +VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT +I TLA+ K+ V + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGAD-SAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R + L +D + D+ + D+L Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403 >gi|103487431|ref|YP_616992.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] gi|98977508|gb|ABF53659.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] Length = 459 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/385 (33%), Positives = 200/385 (51%), Gaps = 11/385 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+ + Y T +Q + P ++ +D+ AQTG+GKT F L LL R + Sbjct: 13 INRALAAKDYTQPTPIQTQAIPPLMKGRDLCGIAQTGTGKTAGFSLPSIHHLLTYPHRPT 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P + L +APTRELA Q+ + T + V+ GGV ++++ RDL G I+V Sbjct: 73 PRGCRM-LVLAPTRELAAQIAQSCRDYGRFTKLSVSTVFGGVPINKQIRDLSQGVDILVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D I + L + ++ VLDEAD+M+D+GF + + P +R+ L FSAT+ Sbjct: 132 TPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRVAKLLPSRRQNLFFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + D V V++A + + A V ++ + ++++ A++F Sbjct: 192 KEIAGLADQFLNDPVTVSVAPQATTAEKVRQFATFVEQKEKQALLHHVIKTSDIDRALIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ R + L + A+ G SQ +R+ ALQ R G+ R+ +ATD+AARGID+ Sbjct: 252 TRTKHGADRVVRHLKGAGIEAFAIHGNKSQAQRTAALQAFRSGQVRLLVATDIAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSV 367 + VI+ E+ + PE +HR GRT RAG +G+++ F+ P R ER+ R Sbjct: 312 SGVSHVINFEIPNVPEQYVHRIGRTARAGAEGIAISFIAPDERPYIRDIERVTR-----T 366 Query: 368 VWEPAPSVEAIRE--RDAQRILQDP 390 EP P E E R+ + +Q P Sbjct: 367 RAEPMPLPEGFNELVRNLPKPVQPP 391 >gi|315123425|ref|YP_004065431.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] gi|315017185|gb|ADT70522.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] Length = 433 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/345 (36%), Positives = 186/345 (53%), Gaps = 3/345 (0%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K F P++I +AL E Y LT +Q A + + KDVL SAQTG+GKT AF L + Sbjct: 3 FKSFSFAPELI-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L E+D S +AP AL +APTRELA Q+ + T + V GGV+ + Sbjct: 62 KLF-ESDS-STTNAPSALVLAPTRELAEQIANNFKDFAKYTSLKVVSLFGGVNTAGQEIA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G IVV TPGRL DHIR L+++ +K +VLDEAD MLD+GF +D++ ++ S +R Sbjct: 120 LKEGVDIVVATPGRLLDHIRLGNLSLAQVKHLVLDEADRMLDMGFINDMQSVIKSCADER 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++L+FSAT AI A K V + N S + + V + + ++ Sbjct: 180 QILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRKQELLSELIG 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + +VF + + + L G+ SQ R AL+ ++G+ RV +A Sbjct: 240 KKNWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 T+VAARGID+ L VI+ +L E+ +HR GRTGRAG +G ++ Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAI 344 >gi|303238786|ref|ZP_07325318.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] gi|302593665|gb|EFL63381.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] Length = 381 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/340 (37%), Positives = 187/340 (55%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I +A+ E GY T +Q+ + L +D+L AQTG+GKT AF + L TL E Sbjct: 7 NIITPILKAICEEGYTTPTLIQQQAIPVILEGRDLLGCAQTGTGKTAAFAIPLLQTLYKE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 L + PTRELA+Q+G LE TG+ AV GGVS + L++G Sbjct: 67 RTNLKGQRIVKGLILTPTRELAIQIGESLEAYGRYTGIKHAVIFGGVSQVPQVNKLRSGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + K +N+S LK ++LDEAD MLD+GF D++ I+ R+ L+F Sbjct: 127 DIIVATPGRLLDLMNQKYINVSCLKMLILDEADRMLDMGFSFDVKKIISRLTDTRQTLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ IT + K+ V+V + + I+ V D+ + ++ +L+ + Sbjct: 187 SATMPKEITKMVDAILKNPVKVEVTPVSSTVDTIEQNVYFVEQKDKKSLLIKLLKNRAIE 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + K LA+ A+ G+ SQ R AL + R RV +ATD+AA Sbjct: 247 SVLVFTRTKHGADKIAKDLAKLSITAQAIHGDKSQVARQIALNNFKLKRTRVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L +I+ +L + PE +HR GRTGRAG G ++ Sbjct: 307 RGIDIQELSHIINFDLPNVPETYVHRIGRTGRAGMVGTAL 346 >gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17] gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17] Length = 375 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 193/348 (55%), Gaps = 5/348 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 NI + I +AL + Y T +Q+ + L +D+L AQTG+GKT AF + + L Sbjct: 7 NISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPIIQQLAKS 66 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 A+++R A L + PTRELA+Q+ + T + V GGVS + + ++L+ Sbjct: 67 ADDNRRRDIKA---LILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELER 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I++ TPGRL D I + + H+ VLDEAD MLD+GF DI+ ++ PK+R+ L Sbjct: 124 GVDILIATPGRLLDLISQHIITLEHICHFVLDEADRMLDMGFIHDIKKLIPLLPKRRQTL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I L+K+ RV +A + I+ R V + + +V++L+ G Sbjct: 184 LFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSVLKNDG 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++A+VF T+ R + L + A+ G SQ R AL + G+ RV +ATD+ Sbjct: 244 NRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIVATDI 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 AARGID+ +L++VI+ +L E +HR GRTGRAG G+++ Q+ Sbjct: 304 AARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQD 351 >gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864] Length = 793 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 205/359 (57%), Gaps = 25/359 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L +G L +Q +P KD++ A+TGSGKT++F L + LL +N R A Sbjct: 210 LHAQGIRTLFPIQAQTYHPIFEGKDIVAQARTGSGKTLSFALPVIERLL-KNPRSEKGRA 268 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133 P L +APTRELA QV R E + + + ++C+ GGV + ++ G +VVGTPG Sbjct: 269 PAVLVMAPTRELASQVHRVFESVAPQ---LASICVYGGVEYGPQELAMRKGLDVVVGTPG 325 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---KKRRMLMFSATIS 190 RL DH L++ + ++LDEAD ML++GF+++++ I+ P K R+L+FSAT+ Sbjct: 326 RLIDHYNRGNLSLRSIDVMILDEADRMLEVGFQENVDEIMAGLPIGDAKPRILLFSATMP 385 Query: 191 PAITTLAKNYQK-DAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILR-YHGAKN 246 + L K YQ+ D V V++ S Q + I + A+ +R NAI +++R Y G+ Sbjct: 386 TWVKALTKKYQREDKVMVDLVSGTDQQTSTTIQHLAIRCPWQERANAIGDVVRVYSGSHG 445 Query: 247 -AIVFCSTRASVSRFT---KVLAE-HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +VF ST+ + ++ E H+ L G+++Q++R L R G+ R +AT Sbjct: 446 RCMVFASTKEEANDLALNGRIAGETHV-----LHGDIAQKQREITLAGFRSGKFRCLVAT 500 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAE 357 DVAARG+D+P++ELVI E + E +HR+GRTGRAG+ G + F PQ ++ RR E Sbjct: 501 DVAARGLDIPEVELVIQTEPPIDVETYIHRAGRTGRAGKSGTCILFYKPQQESLVRRIE 559 >gi|237713858|ref|ZP_04544339.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409233|ref|ZP_06085777.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645798|ref|ZP_06723482.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a] gi|294809471|ref|ZP_06768175.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC 1b] gi|229446014|gb|EEO51805.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352980|gb|EEZ02076.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638877|gb|EFF57211.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a] gi|294443343|gb|EFG12106.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC 1b] Length = 374 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 193/345 (55%), Gaps = 1/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY T +QE + P L ++D+L AQTG+GKT +F + + L + Sbjct: 7 NITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQHLQLD 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + AL + PTRELA+Q+ ++ T + V GGV+ + L+ G Sbjct: 67 KEA-ARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRKGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + +++ ++ VLDEAD MLD+GF DI+ IL PK+++ L F Sbjct: 126 DILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I +L K+ K+ V++ I ++ I V ++ +++IL + Sbjct: 186 SATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQLVYFVEKKEKSQLLISILSKAEDQ 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++F T+ + + K+L + A+ G SQ R +AL + G+ RV +ATD+A+ Sbjct: 246 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RGID+ +L LVI+ +L PE +HR GRTGRAG G ++ Q Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQ 350 >gi|73540223|ref|YP_294743.1| helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia eutropha JMP134] Length = 506 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 194/370 (52%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q + L+ D+L AQTG+GKT F L + L + Sbjct: 15 AVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQLLSESAPQRQGKP 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL + PTRELA QV + + V GGV ++ + L+ G IVV TPG Sbjct: 75 AVRALVLTPTRELAAQVEESVRNYGKYVRLRSMVMFGGVGINPQIEQLRRGVEIVVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + +++S ++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT S I Sbjct: 135 RLLDHVSQRTIDLSSVELLVLDEADRMLDMGFIHDIRKILNVLPPKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + + +A N + R V + + +++R H +VF T Sbjct: 195 RALADRLLNNPASIEVARRNTTAETVAQRVYPVDRERKRELLAHLVREHDWHQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + +A+ G SQ R+ AL + G R+ +ATD+AARGID+ L Sbjct: 255 KHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTLRLLVATDIAARGIDIDQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR---EANVSV 367 V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL + E V Sbjct: 315 PHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGLLRDIERLIKRKLEQTVLT 374 Query: 368 VWEPAPSVEA 377 +E P++ A Sbjct: 375 GFEVDPTIAA 384 >gi|326795505|ref|YP_004313325.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1] gi|326546269|gb|ADZ91489.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea MMB-1] Length = 443 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 196/359 (54%), Gaps = 16/359 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+P + +++SE G+ + +Q A L L D++ AQTG+GKT AF LA+ S L Sbjct: 67 NLPDRVLKSVSEMGFEYCSEIQAATLPATLEGYDLIGQAQTGTGKTAAFLLAMVSDFLDY 126 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E +R + L IAPTRELA+Q+ E E + + V +GG+S +++R L+ Sbjct: 127 PVEEER--ARNMARGLIIAPTRELALQIADEAEKITQNCSLNVISLVGGMSYEKQKRALE 184 Query: 123 NG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 I+V TPGRL D R K ++ ++ +VLDEAD ML +GF D++ I+ +P K Sbjct: 185 TERVDILVATPGRLLDFARSKKAMLNKVEVLVLDEADRMLSMGFIPDVKSIIRMTPHKER 244 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ ++FSAT I LA+ + V++ + + +ID V + + +++ Sbjct: 245 RQTMLFSATFPKDIQNLARQWTYFPKEVSVVPKEATNKNIDQVIYTVEADQKWPVLKSLI 304 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 G + I+F + R ++L E LSGE+SQ +R L+ +DGR +V + Sbjct: 305 EDDGNQRTIIFANRRDETRELYELLKEAKINCAILSGEVSQDKRVKTLKNFKDGRIQVLV 364 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350 ATDVA RGI + ++ELV++ L +PE+ +HR GRTGR G G SV F+IP+ Sbjct: 365 ATDVAGRGIHVDNIELVVNYTLPEDPEDYVHRIGRTGRGGEMGKSVSFASEDDAFLIPE 423 >gi|52840505|ref|YP_094304.1| DEAD-box ATP dependent DNA helicase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627616|gb|AAU26357.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 414 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/338 (36%), Positives = 185/338 (54%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + A+SE GY TS+Q + L D+L SAQTG+GKT +F L + ++ + S Sbjct: 12 LNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQKA-SQQTQTS 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P + L + PTRELA+QV + + AV GGV H + + L +G I+V Sbjct: 71 PNRVKV-LILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + + + +VLDEAD MLD+GF DI+ I+ P KR+ L+FSAT + Sbjct: 130 TPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSATFT 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P + LA+N AV ++IA N I V + + + ++L + +VF Sbjct: 190 PEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ K LAE VA+ G SQ +R AL + G+ + IATD+AARGID+ Sbjct: 250 SRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKVQTLIATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L PE+ +HR GRTGRAG G++V ++ Sbjct: 310 EKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLV 347 >gi|295085349|emb|CBK66872.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens XB1A] Length = 374 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 193/345 (55%), Gaps = 1/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY T +QE + P L ++D+L AQTG+GKT +F + + L + Sbjct: 7 NITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQHLQLD 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + AL + PTRELA+Q+ ++ T + V GGV+ + L+ G Sbjct: 67 KEA-ARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRKGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + +++ ++ VLDEAD MLD+GF DI+ IL PK+++ L F Sbjct: 126 DILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I +L K+ K+ V++ I ++ I V ++ +++IL + Sbjct: 186 SATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQVVYFVEKKEKSQLLISILSKAEDQ 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++F T+ + + K+L + A+ G SQ R +AL + G+ RV +ATD+A+ Sbjct: 246 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RGID+ +L LVI+ +L PE +HR GRTGRAG G ++ Q Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQ 350 >gi|24372003|ref|NP_716045.1| ATP-dependent RNA helicase RhlB [Shewanella oneidensis MR-1] gi|32363323|sp|Q8EJQ5|RHLB_SHEON RecName: Full=ATP-dependent RNA helicase rhlB gi|24345864|gb|AAN53490.1|AE015489_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 439 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 194/338 (57%), Gaps = 3/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRF 69 + +AL+E G+ T +Q L L+ KD+ AQTG+GKT+AF +A + LL+ + Sbjct: 20 VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEG 79 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + P A+ +APTRELA+Q+ ++ L T + V + GG S +R+ L G I++ Sbjct: 80 RQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILI 139 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSA 187 GT GR+ D++R +N++ ++AVVLDEAD M DLGF DI F+ P +R ++FSA Sbjct: 140 GTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSA 199 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+S + LA ++ D V+V IA E + +I + D+ ++ ++ + A Sbjct: 200 TLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLIEEDWPEKA 259 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF +T+ S L +V L+G++ Q++R L+ G+ + +ATDVAARG Sbjct: 260 IVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARG 319 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + + D+ V + +L + E+ +HR GRTGRAG KG+SV Sbjct: 320 LHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSV 357 >gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 429 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 188/342 (54%), Gaps = 2/342 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L L TLL + Sbjct: 8 LPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLL-TLLEKG 66 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +R P AL + PTRELA QV + + AV GGV ++ + + L+ G Sbjct: 67 NRPKPNQV-RALVLTPTRELAAQVHASVATYGKNMPLRSAVVFGGVKINPQMQILRQGVD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL D ++ L+ ++LDEAD MLD+GF DI+ IL PK+R+ L+FS Sbjct: 126 VLVATPGRLIDLYNQNAVSFKQLEVLILDEADRMLDMGFIHDIKRILAVLPKQRQNLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT SP I LAK + V ++++ N ++ V + + + +++ + + Sbjct: 186 ATFSPDIRRLAKGLVNNPVEISVSPRNTTAENVTQTVYEVDKTKKSIVLSTLIKQNDWQQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R K L A+ G SQ R+ AL ++G+ R +ATD+AAR Sbjct: 246 VLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTRALAGFKEGQVRALVATDIAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ L V++ +L E+ +HR GRTGRAG +G ++ ++ Sbjct: 306 GIDIDQLPQVVNFDLPHVSEDYVHRIGRTGRAGNEGQALSLV 347 >gi|285017902|ref|YP_003375613.1| ATP-independent RNA helicase [Xanthomonas albilineans GPE PC73] gi|283473120|emb|CBA15626.1| probable atp-independent rna helicase protein [Xanthomonas albilineans] Length = 458 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 197/364 (54%), Gaps = 15/364 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY +T VQ L P L DV+V A TGSGKT AFGL L L R AL Sbjct: 21 GYTTMTPVQAQSLPPILAGHDVIVQAPTGSGKTAAFGLGLLHKLDPALVRAQ------AL 74 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVHRERRDLQ-NGAHIVVGTPGR 134 + PTRELA QVG+++ L TG+ + V GG+ + + L+ + +VVGTPGR Sbjct: 75 VLCPTRELADQVGKQVRKL--ATGIANMKLVVLTGGMPLAPQLASLEAHDPQVVVGTPGR 132 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + + R + L++ ++ +VLDEAD MLD+GF + I I K R+ L+FSAT I Sbjct: 133 IQELARKRVLHLGGVRTLVLDEADRMLDMGFEEPIREIAGRCDKHRQSLLFSATFPETIR 192 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 LA+ KD + +A +ID + V S R A+ +L ++++VFC+TR Sbjct: 193 ALARELLKDPTEITVAGAE-SAPEIDQQFFEVDPSYRQKAVAGLLLRFAPESSVVFCNTR 251 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V L + F +AL G++ Q++R L + V +A+DVAARG+D+ DL Sbjct: 252 KEVDEVASSLQQFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLA 311 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP 373 V++ EL ++ E HR GRT RAG+ G+++ V P+ +Q RA+ L E ++ + W AP Sbjct: 312 AVLNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRELQ-RAQALETEQSLPLRWSRAP 370 Query: 374 SVEA 377 A Sbjct: 371 LATA 374 >gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145] gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145] Length = 423 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 186/341 (54%), Gaps = 3/341 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL+ +GY T +Q + + DV+ +AQTG+GKT F L + +L N+ Sbjct: 10 PEIL-NALTRQGYTEPTPIQAQAIPAVMAGNDVMAAAQTGTGKTAGFTLPILE-MLKGNE 67 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R + A+ L + PTRELA QVG + + AV GGV ++ + L+ G I Sbjct: 68 R-AKANTARVLILTPTRELAAQVGESVANYGKDLPLSYAVVFGGVKINPQMMKLRKGVDI 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + + L+ +VLDEAD MLD+GF DI+ I+ P KR+ LMFSA Sbjct: 127 LVATPGRLLDLYQQNAIRFPQLETLVLDEADRMLDMGFIHDIKKIIKLLPAKRQNLMFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LAK+ + V +++A+ N I+ + + ++ ILR Sbjct: 187 TFSDEIRKLAKSLVNNPVEISVAAPNATAERIEQTLYAAEKTHKPRMLMQILRNLNLPQV 246 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF T+ +R K L + F A+ G SQ R+ AL + G +V +ATD+AARG Sbjct: 247 IVFSRTKHGANRLVKQLDKDGFLAAAIHGNKSQGARTKALSDFKSGAVQVLVATDIAARG 306 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+ L VI+ +L E+ +HR GRTGRAG+ G ++ ++ Sbjct: 307 LDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQVGHAISLV 347 >gi|229109888|ref|ZP_04239470.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15] gi|228673542|gb|EEL28804.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15] Length = 458 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + + E Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPFILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 71 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp. salmonicida A449] Length = 613 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 202/373 (54%), Gaps = 15/373 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + GY + +Q A + + D+L AQTG+GKT AF L L S L A N Sbjct: 21 KALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSRLEAGNRNTQ-- 78 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L +APTRELA+QV + YAK V GG S + R L+ GA +VVG Sbjct: 79 ----VLVLAPTRELALQVAEACQR-YAKHMPDFHVLPIYGGSSYETQTRALRRGAQVVVG 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D IR K L++S LKA+VLDEADEML +GF DD+++I++ P R++ +FSAT+ Sbjct: 134 TPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVALFSATMP 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A+ + K + I S+ I R V + +A+ +L + +VF Sbjct: 194 DQIRRVAQKHLKQPKEIKIVSKTSTAPTIRQRYWQVTGLHKLDAMTRLLEVEPYEAVLVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + LA AL G++ Q+ R + +R G+ + IATDV ARG+D+ Sbjct: 254 VRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGLDV 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369 + V++ ++ + E+ +HR GRTGRAGRKG ++ FV P+ +RR R A + Sbjct: 314 ERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPR--ERRMLRAIEHATRQAI- 370 Query: 370 EP--APSVEAIRE 380 EP PS E I + Sbjct: 371 EPMKMPSTEDINQ 383 >gi|114643639|ref|XP_001154067.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3 [Pan troglodytes] Length = 455 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|39644716|gb|AAH09379.2| DDX47 protein [Homo sapiens] Length = 450 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 26 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 85 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 86 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 139 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 140 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 200 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 259 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 260 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 319 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 320 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 364 >gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892] gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892] Length = 474 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A + GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + + Sbjct: 62 DACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELAVQ+ E L + V AV +GG+ + + L HI+V TP Sbjct: 119 ---FGLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL P++RR +FSAT+S Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q S + + + +D +V+IL + I+F Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQTTIIF 295 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R + +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 296 TRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDI 355 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P ++LV++ +L S+ + +HR GRT RAG+ G ++ V+ Q Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395 >gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens] gi|52782792|sp|Q9H0S4|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName: Full=DEAD box protein 47 gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens] gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens] gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct] gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens] gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens] gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens] Length = 455 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22] gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22] Length = 374 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 193/345 (55%), Gaps = 1/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY T +QE + P L ++D+L AQTG+GKT +F + + L + Sbjct: 7 NITEPILKAIEEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQHLQLD 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + AL + PTRELA+Q+ ++ T + V GGV+ + L+ G Sbjct: 67 KEA-ARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRKGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + +++ ++ VLDEAD MLD+GF DI+ IL PK+++ L F Sbjct: 126 DILVATPGRLLDLMTQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I +L K+ K+ V++ I ++ I V ++ +++IL + Sbjct: 186 SATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQVVYFVEKKEKSQLLISILSKAEDQ 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++F T+ + + K+L + A+ G SQ R +AL + G+ RV +ATD+A+ Sbjct: 246 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RGID+ +L LVI+ +L PE +HR GRTGRAG G ++ Q Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQ 350 >gi|296425145|ref|XP_002842103.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638362|emb|CAZ86294.1| unnamed protein product [Tuber melanosporum] Length = 513 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/345 (35%), Positives = 188/345 (54%), Gaps = 14/345 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY N TS+Q + L KD++ A+TGSGKT AF + + L + Sbjct: 95 EACENLGYKNPTSIQVESIPVALEGKDLIGLAETGSGKTAAFAIPILQAL------WDNP 148 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + A +APTRELA Q+ + E L GV AV +GG+ + + L HI+V TP Sbjct: 149 TGLFACILAPTRELAFQISEQFEALGGGIGVRSAVIVGGMDMMTQSVALGKKPHILVATP 208 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LD+ F ++ IL P+ RR +FSAT++ Sbjct: 209 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVIPQTRRTYLFSATMTS 268 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + VR+++ S+ S + + + + +D +V ++ + I+FC Sbjct: 269 KVEKLQRASLSSPVRISVGSKYSTVSTLIQKFLFIPFKHKDTYLVYLMNEFAGQTTIIFC 328 Query: 252 STRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T SR +L HL F V L+G++SQ R AL + G + +ATDVAARG+D+ Sbjct: 329 RTVQETSRLA-ILLRHLGFNAVPLNGQMSQSARLGALNKFKSGSRNILVATDVAARGLDM 387 Query: 311 ---PD--LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 PD L V++ +L+ + + +HR GRT RAGR G S+ ++ Q Sbjct: 388 HVSPDALLYCVLNHDLAQDSKTYIHRVGRTARAGRSGRSISLVTQ 432 >gi|187925284|ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN] gi|187716478|gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans PsJN] Length = 515 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 182/337 (54%), Gaps = 2/337 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSP 71 A+ E GY T +Q + L D+L AQTG+GKT F L + L + S Sbjct: 15 AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLNTMPAVTTGSG 74 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGV ++ + L++G IVV T Sbjct: 75 KRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVDIVVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++SHL+ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 135 PGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I TLA N + +A N + + V + + ++++ H +VF Sbjct: 195 EIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLVFT 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL +DG +V +ATD+AARGID+ Sbjct: 255 RTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGIDID 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G ++ ++ Sbjct: 315 QLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLV 351 >gi|114643643|ref|XP_001153944.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 443 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 19 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 78 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 79 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 132 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 133 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 192 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 193 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 252 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 253 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 312 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 313 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 357 >gi|78224228|ref|YP_385975.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15] gi|78195483|gb|ABB33250.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15] Length = 438 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 196/342 (57%), Gaps = 3/342 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+++ +++ G+ + T +QE L L KDV AQTG+GKT AF ++L + LL + Sbjct: 7 NLPELVQRGIADTGFTDCTPIQEKTLPLALSGKDVAGQAQTGTGKTAAFLISLFTRLL-K 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N P AL +APTREL VQ+ ++ + L A G V+ GGV ++R L+ GA Sbjct: 66 NPTEGETRNPRALILAPTRELVVQIEKDAQALGAHCGFVIQAIYGGVDYMKQRSALKEGA 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183 +VVGTPGRL D+++ K ++ ++ +V+DEAD M D+GF D+ FIL P KR+ L Sbjct: 126 DVVVGTPGRLIDYLKQKVYSLKEIEVLVIDEADRMFDMGFIADLRFILRRLPPFDKRQNL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT++ + LA + +V + E ++ V ++ ++ +LR G Sbjct: 186 MFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLRKKG 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F +T+ + L + F +SG++ Q++R L+ ++G+ + IATDV Sbjct: 246 MERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRMRILEDFKNGKLPIMIATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 A+RG+ + + VI+ +L + E+ +HR GRT RAG +G ++ Sbjct: 306 ASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAI 347 >gi|289428099|ref|ZP_06429802.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes J165] gi|289158699|gb|EFD06900.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes J165] gi|313822547|gb|EFS60261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2] gi|314960461|gb|EFT04563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2] gi|314989611|gb|EFT33702.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3] gi|315085333|gb|EFT57309.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3] gi|327327119|gb|EGE68898.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3] gi|327443743|gb|EGE90397.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2] gi|328754844|gb|EGF68460.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1] Length = 560 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 60 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH + VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403 >gi|161506849|ref|YP_001576803.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC 4571] gi|160347838|gb|ABX26512.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC 4571] Length = 503 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 191/342 (55%), Gaps = 4/342 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L+ KDV+ AQTG+GKT AFGL + ++ + + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQSI--DKKEKAIQ 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131 + A+ I PTRELA+Q EL L V V GG + R+ R L Q+ I+VGT Sbjct: 72 AIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIRRQIRSLKQHAPSILVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ +++ + VVLDEADEMLD+GF DIE IL + ++ L+FSAT+ Sbjct: 132 PGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCKQTLLFSATMPK 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + KD V I ++ ID V S++ + + ++ G A+VF Sbjct: 192 PILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R L+ R+G+ + +ATDVAARG+D+ Sbjct: 252 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDIS 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 312 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEI 353 >gi|302823844|ref|XP_002993570.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii] gi|300138582|gb|EFJ05345.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii] Length = 434 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/382 (32%), Positives = 210/382 (54%), Gaps = 17/382 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A ++ G+ T +Q L L+ +D++ AQTGSGKT AF L + L + F Sbjct: 21 DACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQALFQQCHPF--- 77 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A ++PTRELA+Q+ + E L ++ GV +GGVS+ + L HIVV TP Sbjct: 78 ---FACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKNPHIVVATP 134 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ ++K +VLDEAD++L F +++ IL P++R+ +FSAT++ Sbjct: 135 GRLLDHLTNTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKTFLFSATMTN 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + ++ +V ++S+ + V V +D V +L A+VF Sbjct: 195 KVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKHKDCYFVFLLNEMAGSTAMVFT 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T S R +L F + +SG++SQ +RS AL + G + I TDVA+RG+D+P Sbjct: 255 RTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLICTDVASRGLDIP 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368 +++VI+ ++ +N ++ +HR GRT RAGR G ++ ++ Q ++ +R E L +++ Sbjct: 315 SVDVVINYDIPTNSKDYIHRVGRTARAGRSGRAISIVTQYDVDLYKRIEDLI---GMTLP 371 Query: 369 WEPAPSVEAI----RERDAQRI 386 PA + E + R +AQR+ Sbjct: 372 EFPAKADEVLLLEERVSEAQRL 393 >gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae 7-10-1-b] Length = 530 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 188/341 (55%), Gaps = 3/341 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY N T VQE + L +D++ +A TG+GKT AF L + STL R Sbjct: 16 AVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPILSTLPRVKGR---NR 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AP L ++PTRELA Q+ R + +T GG + ++L+ G +++ TPG Sbjct: 73 APRVLVVSPTRELAQQIARTCMQISRQTRHFTTTVFGGTPYGPQIKELRGGTDVLIATPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D ++ +N+S ++ +VLDEAD MLD+GF D+ I+D++P+ R+ L+FSATI +I Sbjct: 133 RLKDLMKRGVVNLSSVEVLVLDEADRMLDMGFLPDVTTIVDATPECRQTLLFSATIDQSI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + D V IA ++ + + ++ + +LR G++ IVF T Sbjct: 193 QKNLGSLLNDPAMVEIARNGETAKTVEQFMMPIKNFNKPELLEAVLREKGSERIIVFART 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L + F+ ++ + SQ R AL+ R G+ + +ATDV ARGID+PD+ Sbjct: 253 KNRTEDCAEALCDAGFRAESIHSDKSQGARRRALENFRRGKTSILVATDVLARGIDVPDV 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ +L PE+ +HR GRTGRAG KG ++ + + R Sbjct: 313 DHVINFDLPDMPEDYVHRIGRTGRAGEKGYAISFVTRETSR 353 >gi|227356697|ref|ZP_03841083.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906] gi|227163205|gb|EEI48136.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906] Length = 465 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 126/379 (33%), Positives = 200/379 (52%), Gaps = 24/379 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q+ + P L KDVL SAQTG+GKT AF L + L ++ Sbjct: 16 AIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEKLATSAEKTKGRK 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+ ++ + V GGVS++ + L+ G +++ TPG Sbjct: 76 PVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQMMKLRGGVDVLIATPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D +++S ++ +VLDEAD MLD+GF DI +++ PKKR+ L+FSAT S I Sbjct: 136 RLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKRQNLLFSATFSKEI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 T LA + + + + +A +N +D LV + + +++ ++F T Sbjct: 196 TGLANSLLNNPISIAVAPKNSAAESVDQYVHLVDKKRKTELLSHLIGLENWPQVLIFTRT 255 Query: 254 RASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 + ++ LAEHL + A+ G SQ R+ AL +DG+ + +ATD+AARG+D Sbjct: 256 KHGANK----LAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----------IPQNMQRRAER 358 + L V++ EL E+ +HR GRTGRA G ++ + I + ++R R Sbjct: 312 IDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLADIERLLKREIPR 371 Query: 359 LFREANVSVVWEPAPSVEA 377 L E ++P PS++A Sbjct: 372 LALEG-----YDPDPSIKA 385 >gi|197284517|ref|YP_002150389.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320] gi|194682004|emb|CAR41470.1| putative ATP-dependent RNA helicase [Proteus mirabilis HI4320] Length = 465 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 126/379 (33%), Positives = 200/379 (52%), Gaps = 24/379 (6%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q+ + P L KDVL SAQTG+GKT AF L + L ++ Sbjct: 16 AIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEKLATSAEKTKGRK 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+ ++ + V GGVS++ + L+ G +++ TPG Sbjct: 76 PVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQMMKLRGGVDVLIATPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D +++S ++ +VLDEAD MLD+GF DI +++ PKKR+ L+FSAT S I Sbjct: 136 RLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKRQNLLFSATFSKEI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 T LA + + + + +A +N +D LV + + +++ ++F T Sbjct: 196 TGLANSLLNNPISIAVAPKNSAAESVDQYVHLVDKKRKTELLSHLIGLENWPQVLIFTRT 255 Query: 254 RASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 + ++ LAEHL + A+ G SQ R+ AL +DG+ + +ATD+AARG+D Sbjct: 256 KHGANK----LAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----------IPQNMQRRAER 358 + L V++ EL E+ +HR GRTGRA G ++ + I + ++R R Sbjct: 312 IDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLADIERLLKREIPR 371 Query: 359 LFREANVSVVWEPAPSVEA 377 L E ++P PS++A Sbjct: 372 LALEG-----YDPDPSIKA 385 >gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Pongo abelii] Length = 455 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus] gi|109825481|sp|Q29S22|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName: Full=DEAD box protein 47 gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus] gi|296487253|gb|DAA29366.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus] Length = 457 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 33 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 92 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 93 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 146 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 147 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 206 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 207 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 266 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 267 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 326 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 327 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 371 >gi|325928093|ref|ZP_08189306.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118] gi|325541591|gb|EGD13120.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118] Length = 458 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 140/413 (33%), Positives = 213/413 (51%), Gaps = 16/413 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P L+ DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPAVTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + +VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAG 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT +I TLA+ K+ V + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGAD-SAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R + L +D + D+ + D+L Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403 >gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 861 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 203/358 (56%), Gaps = 10/358 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + +A+++ G+V T++Q+ + L +DV+ AQTG+GKT AFGL L + + Sbjct: 167 GLPRDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSR 226 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 + S AL +APTRELA+Q + + A++ G+ V GG + L+ G Sbjct: 227 D------SVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGALKGG 280 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D I L + ++ VLDEADEML +GF +D+E I S P RR + Sbjct: 281 AQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAQSLPTDRRTAL 340 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ PAI +A+ + + V+V ++ + + +V + A+ +L A Sbjct: 341 FSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDA 400 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF T+++ LA Q A+SG++ Q+ER ++ +R G V +ATDVA Sbjct: 401 EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVA 460 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 ARG+D+ + LV++ ++ E +HR GRTGRAGR G +V F+ P+ R+ ERL Sbjct: 461 ARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERL 518 >gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15] Length = 440 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 181/335 (54%), Gaps = 3/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A S++GY + +Q + L +DV+ +AQTG+GKT F L L L EN R Sbjct: 15 ATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQRL-GENPRT--GK 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV + AV GGV ++ + L+ G ++V TPG Sbjct: 72 GPRALILTPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQMMKLRKGLDVLVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + + ++ +VLDEAD MLD+GF DI IL P KR+ L+FSAT S I Sbjct: 132 RLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILSLLPAKRQNLLFSATFSNEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLA+ + V+V +A+ N +I V S + + ++R + +VF T Sbjct: 192 RTLAEGLLDNPVQVEVAARNTSAENIKQSVYPVDQSQKTALLSKLVRDNSWDQVLVFTRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R T+ L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ L Sbjct: 252 KHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATDIAARGLDIKQL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G ++ ++ Sbjct: 312 PQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLV 346 >gi|94309401|ref|YP_582611.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans CH34] gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34] Length = 540 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 199/377 (52%), Gaps = 13/377 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q + L+ D+L AQTG+GKT F L + L R + + Sbjct: 15 AVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQLLSETAARANGGN 74 Query: 74 APL-------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 AP AL + PTRELA QV + + V GGV ++ + L+ G Sbjct: 75 APRGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGINPQIEALRRGVD 134 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI +L+ P KR+ L+FS Sbjct: 135 IVVATPGRLLDHVAQRTIDLSHVELLVLDEADRMLDMGFIHDIRKVLNVLPPKRQNLLFS 194 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LA + + +A N + R V + + +++R H Sbjct: 195 ATFSDDIRALADRLLDNPASIEVARRNTTAETVAQRVFPVDRERKRELLAHLVRQHDWHQ 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L + +A+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 255 VLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTEFKAGTLRLLVATDIAAR 314 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363 GID+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL + Sbjct: 315 GIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGLLRDIERLIKRQ 374 Query: 364 NVSVV---WEPAPSVEA 377 V+ +E PS++A Sbjct: 375 IEQVLLPGFEVDPSIKA 391 >gi|313837601|gb|EFS75315.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2] gi|314972540|gb|EFT16637.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3] Length = 536 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 189/344 (54%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 44 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 103 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV + + + G V GGV + LQ G Sbjct: 104 EELTTKGKPQALVMCPTRELALQVSQNISTAASVRGARVLTVYGGVGYEPQIDALQAGVD 163 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH+ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 164 VVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGRTPTPRQTMLFS 223 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ V V + Q + D + + D+ I IL+ + A Sbjct: 224 ATMPAPIMALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDA 283 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G + +ATDVA Sbjct: 284 EKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGDVTILVATDVA 343 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 344 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLV 387 >gi|315084648|gb|EFT56624.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2] Length = 630 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 60 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH + VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403 >gi|58038681|ref|YP_190645.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] gi|58001095|gb|AAW59989.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] Length = 431 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/335 (36%), Positives = 185/335 (55%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+E GY T +Q + L +D+L AQTG+GKT AF L + + + N R + Sbjct: 13 IQKALAEEGYTTPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILNHIFT-NRRPA 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL +APTRELA Q+G AV GGV R+ + G ++V Sbjct: 72 PPKGVRALVLAPTRELASQIGESFAAYARHMKFSYAVVFGGVGQGRQIETTRRGVDVLVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 PGRL D I K +++S L+ +VLDEAD MLD+GF DI+ I+ PK+R+ L+FSAT+ Sbjct: 132 APGRLLDLIGQKHIDLSTLEILVLDEADRMLDMGFVRDIQRIMALLPKQRQTLLFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P+I+ LA + K+ V + E+ I+ + V + +A + +L A+VF Sbjct: 192 PSISDLAHSLLKNPATVQVTPESSTVDRINQAVMFVDSGSKKDAALMLLESPSVARAVVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 + ++ + L ++ + A+ G SQ R A+ R G + +ATD+AARGID+ Sbjct: 252 TLMKHEANKVAEFLNKNGIRAEAIHGNKSQGARERAMAGFRSGAIKALVATDIAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++ V + +L + PE+ +HR GRT RAGR+G +V Sbjct: 312 DEVSHVFNYDLPNVPESYVHRIGRTARAGREGCAV 346 >gi|150864621|ref|XP_001383517.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS 6054] gi|149385877|gb|ABN65488.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS 6054] Length = 396 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 119/352 (33%), Positives = 194/352 (55%), Gaps = 9/352 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q + L KD++ AQTGSGKT AF + + +L + L +AP Sbjct: 7 TPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPY------FGLVLAPA 60 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGK 142 RELA Q+ + L + GV +GG+ + + RDL HI++ TPGR+ DH+ K Sbjct: 61 RELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTK 120 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G ++ LK V+DEAD++LDL F ++ IL P KR +FSAT++ I L + Sbjct: 121 GFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLFSATMTNKIEKLQRASLH 180 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 + VRV ++S+ + ++ +LV+ ++ ++++L K+ I+F TRA R T Sbjct: 181 NPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLLNEFVGKSIIIFARTRAHTQR-TS 239 Query: 263 VLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 +L L F V L G+L+Q +R +L + G A + IATDVAARG+D+P +++VI+ ++ Sbjct: 240 ILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDI 299 Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 ++ + +HR GRT RAGR G S+ ++ Q R+ + + +P+P Sbjct: 300 PTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKLPKDPSP 351 >gi|229030176|ref|ZP_04186236.1| ATP-dependent RNA helicase [Bacillus cereus AH1271] gi|228731134|gb|EEL82056.1| ATP-dependent RNA helicase [Bacillus cereus AH1271] Length = 446 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + + E Sbjct: 12 ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 71 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE + I+ R + + +A+ ++ Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 359 >gi|284992633|ref|YP_003411187.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065878|gb|ADB76816.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus DSM 43160] Length = 611 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/350 (37%), Positives = 192/350 (54%), Gaps = 11/350 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P V+ AL+E G ++QE L L D++ A+TG+GKT+ FG+ + ++ Sbjct: 113 FDVHPDVVA-ALAEAGITRTFAIQELTLPLALAGNDLIGQARTGTGKTLGFGVPMLQRVV 171 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + P AL + PTREL VQV R+L +K G+ V GG + + LQ Sbjct: 172 PPAEGGD--GVPQALVVVPTRELCVQVSRDLATAGSKRGIRVQAIYGGRAFEPQVAALQA 229 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVVGTPGRL D + L + +K +VLDEADEMLDLGF DIE IL P KR+ + Sbjct: 230 GVEIVVGTPGRLLDLAQRGDLILGKVKVLVLDEADEMLDLGFLPDIERILAMVPDKRQTM 289 Query: 184 MFSATISPAITTLAKNY--QKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNI 238 +FSAT+ I TL++++ Q +R + E Q + YRA + D+ + + Sbjct: 290 LFSATMPGPIVTLSRSFMTQPTHIRAHGNDEGSTVPQTTQFIYRAHNL---DKPELLSRV 346 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ +VFC T+ + + L E F A+ G+L Q R AL+ R G+ V Sbjct: 347 LQARDRSLVMVFCRTKRTAQKVADELVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVL 406 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARGID+ + V++ + + + LHR GRTGRAG +G++V ++ Sbjct: 407 VATDVAARGIDVTGVSHVVNYQCPEDEKTYLHRIGRTGRAGSEGVAVTLV 456 >gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1 [Apis mellifera] Length = 452 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 115/358 (32%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I V+ +A + + + T +Q + L KD++ A+TGSGKT AF L + LL Sbjct: 25 IVDVLCKACEDLKWKSPTKIQYEAIPLALEGKDIIGLAETGSGKTAAFALPILQALLENP 84 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ AL + PTRELA Q+ + E L + GV AV +GG+ + + L H Sbjct: 85 QRY------FALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPH 138 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG ++ LK +V+DEAD +L++ F +++ IL P++R+ L+F Sbjct: 139 ILIATPGRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERKTLLF 198 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + ++ V+V ++++ + + + + + +D +V+IL Sbjct: 199 SATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGN 258 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FC+T + R +L F V L G++SQ +R AL + + I+TDVA+ Sbjct: 259 SFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVAS 318 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+ + Q + +R E+L Sbjct: 319 RGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLI 376 >gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767] gi|91207781|sp|Q6BQ61|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3 gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii] Length = 477 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 211/373 (56%), Gaps = 16/373 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP+++ EA+ + + T +Q + L KD++ AQTGSGKT AF + + L Sbjct: 73 IPELL-EAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQAL---- 127 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + +A L +APTRELA Q+ + L + G+ +GG+ + + RDL H Sbjct: 128 --WEAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPH 185 Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGR+ DH+ KG ++ +LK +V+DEAD +LD+ F ++ IL P +R +F Sbjct: 186 ILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTTYLF 245 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ I L + + VRV ++++ + ++ +LV+ ++ ++++L K Sbjct: 246 SATMTNKIAKLQRASLHNPVRVAVSNKYQTADNLVQSMMLVSDGYKNTYLIHLLNEFLGK 305 Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F T A R T +LA L F V L G+L+Q +R +L + G+A + IATDVA Sbjct: 306 SIIIFTRTCAHSQR-TALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIATDVA 364 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR 361 ARG+D+P +++VI+ ++ ++ + +HR GRT RAG+ G S+ +I Q M R E + Sbjct: 365 ARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLRIESVLG 424 Query: 362 EANVSVVWEPAPS 374 + + +P+PS Sbjct: 425 K---KLPKDPSPS 434 >gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp. PCC 8801] gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802] gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801] gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802] Length = 485 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 139/410 (33%), Positives = 215/410 (52%), Gaps = 13/410 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ + T +Q+ + L D+L +QTG+GKT A+ L + + +N AL Sbjct: 22 GFTSPTEIQQKAIPLLLEGHDILGQSQTGTGKTAAYSLPILEQVDVKNPNVQ------AL 75 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELA QV L+ + + + GG S+ R+ R L+ G IVVGTPGR+ D Sbjct: 76 ILTPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLERGVQIVVGTPGRVIDL 135 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 + K L+ L+ VLDEADEML +GF DD++ IL +P R FSAT+ I L Sbjct: 136 LDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKILKQTPDTRSTACFSATMPREIRELVN 195 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASV 257 + K V V + S I+ V + A+ IL ++AI+F T+ + Sbjct: 196 QFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKALQPILELEAPESAIIFVRTKQTA 255 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + T L E V G LSQ +R + R+G+ ++ +ATD+AARG+D+ +L VI Sbjct: 256 AELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVVATDIAARGLDVENLSHVI 315 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRRAERLFREANVSVVWEPAPS 374 + +L N E +HR GRTGRAG+ G ++ + I + M ++ ER R+ + + P+ S Sbjct: 316 NYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQIERKLRQ-QLEICQIPSRS 374 Query: 375 -VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 VE+ R QR +Q+ L + + +V L A++DP+ IAA L++ Sbjct: 375 QVESKRLEKLQRQIQESLAGERM-ASFLPIVRELSAEYDPQAIAAAALQM 423 >gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893] gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893] Length = 441 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 182/335 (54%), Gaps = 3/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A +++GY + +Q + L +DV+ +AQTG+GKT F L L L AEN R Sbjct: 15 ATADQGYETPSPIQAKAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQRL-AENPRT--GK 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L +APTRELA QV + AV GGV ++ + L+ G ++V TPG Sbjct: 72 GPRVLILAPTRELAAQVHDSVALYSRYMPTKSAVVFGGVKINPQMMKLRKGLDVLVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + + ++ +VLDEAD MLD+GF DI IL P KR+ L+FSAT S I Sbjct: 132 RLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATFSNEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLA+ + V+V +A+ N I V S + + ++R +G + +VF T Sbjct: 192 RTLAEGLLDNPVQVEVAARNTAAESIKQSVYPVDQSQKTALLSKLVRDNGWEQVLVFTRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R T+ L A+ G SQ R+ AL + G RV +ATD+AARG+D+ L Sbjct: 252 KHGANRLTQKLERDGITAAAIHGNKSQGARTRALADFKQGEVRVLVATDIAARGLDIKQL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G ++ ++ Sbjct: 312 PQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLV 346 >gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102] gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102] Length = 469 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 185/342 (54%), Gaps = 5/342 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVRSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ + L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347 >gi|91775307|ref|YP_545063.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91775451|ref|YP_545207.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91709294|gb|ABE49222.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91709438|gb|ABE49366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|167042456|gb|ABZ07182.1| putative DEAD/DEAH box helicase [uncultured marine microorganism HF4000_ANIW133B20] Length = 515 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 185/335 (55%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY + T +Q + L D+L AQTG+GKT F L + L A+ + P Sbjct: 26 AIADTGYTHPTPIQAQAIPLVLNGGDLLAGAQTGTGKTAGFTLPVLHLLHAKPVKVKPGQ 85 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV ++ + V GGV ++ + L+ I+V TPG Sbjct: 86 -PRCLILTPTRELAAQVEESVQTYGKHLKLTSMVMFGGVGINPQIERLKKPLDILVATPG 144 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI+ +L PKKR+ L+FSAT S I Sbjct: 145 RLLDHAAQKTIDLSAIEILVLDEADRMLDMGFIRDIKRVLALLPKKRQNLLFSATFSDEI 204 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V +A N ++ LV+ + + + +++R+H K ++F T Sbjct: 205 KELADGLLHNPGFVEVARRNTASELVEQAVHLVSQGHKRDLVAHLIRHHDWKQVLIFTRT 264 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L++ A+ G SQ R+ AL ++G V +ATD+AARG+D+ L Sbjct: 265 KHGANRLAEKLSKDGIAAAAIHGNKSQSARTKALAEFKNGTLPVLVATDIAARGLDIDQL 324 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G +V ++ Sbjct: 325 PQVVNFELPNVPEDYVHRIGRTGRAGCSGAAVSLV 359 >gi|85374360|ref|YP_458422.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] gi|84787443|gb|ABC63625.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] Length = 455 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 193/348 (55%), Gaps = 7/348 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +++ + GY T +QE + P L KD++ AQTG+GKT +F L + + A Sbjct: 10 PELL-KSVEKAGYTEPTPIQEQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDIMAAGRR 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV E + +A+ IGGV + + + L G + Sbjct: 69 R---ALMPRSLILEPTRELAAQVAENFEKYGENHDLKMALLIGGVQMGDQIKALNEGVDV 125 Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++ TPGRL D RGK L ++ + +V+DEAD MLD+GF DIEFI P++R+ ++FS Sbjct: 126 LIATPGRLMDLFERGKIL-LNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQTMLFS 184 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I L+K + + R+ + DI V V + + +L + Sbjct: 185 ATMPPPIEKLSKQFMSNPKRIETTRAATTNKDITAFRVNVGQRQKRETLEWLLENDHVET 244 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF + + +V K L F+ + G++ Q +R+ LQ +DG + +A+DVAAR Sbjct: 245 AIVFANRKTTVRELNKSLQRRGFKSGEIHGDIDQNQRNAELQRFKDGEINILVASDVAAR 304 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 G+D+ + V + + +P++ +HR GRTGRAG KG + FV P++ + Sbjct: 305 GLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVAPEDAE 352 >gi|290474026|ref|YP_003466900.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Xenorhabdus bovienii SS-2004] gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Xenorhabdus bovienii SS-2004] Length = 459 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 198/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GYV T +Q+ + L KD+L SAQTG+GKT F L + LL+E+ + Sbjct: 15 AVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQ-LLSESPAQAKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QVG + + V GGVS++ + L+ G I+V TP Sbjct: 74 RPVRALILTPTRELAAQVGENVCNYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++SH++ ++LDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRVLSKLPAKRQNLLFSATFSDD 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +LA +D V + +A N ID V + + ++ + +VF Sbjct: 194 IKSLANKLLRDPVSIEVARRNSASEQIDQAVHFVDKKRKGELLSYMIGNQNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L++ A+ G SQ R+ AL + GR R +ATD+AARG+D+ Sbjct: 254 TKHGANRLAEQLSQDGVTAAAIHGNKSQGARTRALADFKSGRIRALVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368 L V++ EL + E+ +HR GRTGRA G ++ ++ + ERL + + Sbjct: 314 LPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCVDEHKLLHDIERLLKREIPRIAI 373 Query: 369 --WEPAPSVEA 377 ++P PS++A Sbjct: 374 SGYDPDPSIKA 384 >gi|260365571|ref|ZP_05778108.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|260877635|ref|ZP_05889990.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|260895944|ref|ZP_05904440.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308085216|gb|EFO34911.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308090909|gb|EFO40604.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|308114339|gb|EFO51879.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] Length = 417 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 185/355 (52%), Gaps = 8/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q + E L+ V T VQE + L KD+L +AQTG+GKT AFGL + + + Sbjct: 10 IEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQAVQQKK 69 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +P AL + PTRELA QV L T + + GG S+ ++ L+ GA Sbjct: 70 RNGTPH----ALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEEGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH+ +NIS +VLDEAD MLD+GF D++ IL P +++++FS Sbjct: 126 ILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I T+A V V ++ N + V + + ++ + Sbjct: 186 ATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ K L + V+++G+ SQ R AL + G+ R IATDVAAR Sbjct: 246 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 G+D+ +LE V++ ++ E+ +HR GRTGRAG+ G++V + M R E L R Sbjct: 306 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSL----MSRDEEYLLR 356 >gi|119384480|ref|YP_915536.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus denitrificans PD1222] gi|119374247|gb|ABL69840.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans PD1222] Length = 479 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 200/366 (54%), Gaps = 4/366 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G + +QE + + +D+L AQTG+GKT AFGL + + LL + P + AL Sbjct: 86 GIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPMLTRLLNIGRKPEPRTC-RAL 144 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ ++ T + +GG S++ + + L+ G +++ TPGRL D Sbjct: 145 ILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASINVQVQRLERGVDVLIATPGRLIDL 204 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I +++S + +VLDEAD+MLD+GF + I P++R+ L+FSAT+ + LA Sbjct: 205 IERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKMLPRERQTLLFSATMPKLMEELAD 264 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +Y D +RV + + ID V D+ + L H + AIVF T+ Sbjct: 265 SYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATLLAEYLSKHVDELAIVFGRTKHGSE 324 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + K+L + F+V A+ G SQ +R AL R G +V +ATDVAARG+D+P + V + Sbjct: 325 KLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVLVATDVAARGLDIPQVAHVYN 384 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM-QRRAERLFREANVSVVWEPAPSVE 376 +L + PEN +HR GRT RAGR G ++ F P + + RA +A ++VV P Sbjct: 385 YDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRAIEKAMKAKIAVVGGEEPFEA 444 Query: 377 A-IRER 381 A IRER Sbjct: 445 AKIRER 450 >gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens DSM 3043] gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens DSM 3043] Length = 452 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 182/336 (54%), Gaps = 2/336 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E+GY + +Q + L +DV+ +AQTG+GKT F L + L A +P Sbjct: 14 DAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPILERLAAGTR--APG 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA Q+G +E + AV GGV ++ + L+ G I+V TP Sbjct: 72 KQVRALILTPTRELAAQIGANIEAYGKHLPLRSAVVFGGVKINPQIAKLRGGVDILVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D K +N L +VLDEAD MLD+GF DI IL + P KR+ L+FSAT S Sbjct: 132 GRLLDLHGQKAVNFDALDVLVLDEADRMLDMGFIHDIRRILKTLPSKRQNLLFSATFSQE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK D V +++ N + V + + + +++ H + +VF Sbjct: 192 IRQLAKGLVNDPVEISVTPRNTTAETVTQWIHPVDKARKPALLTHLIHEHQWQQVLVFMR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R ++ L E + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 252 TKHGANRLSRHLEEAGIEAAAIHGNKSQNARTKALDGFKSGEIRVLVATDIAARGLDINQ 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL + E+ +HR GRTGRAG G ++ ++ Sbjct: 312 LPQVVNFELPNVAEDYVHRIGRTGRAGASGHAISLV 347 >gi|307293134|ref|ZP_07572980.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] gi|306881200|gb|EFN12416.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] Length = 460 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 199/369 (53%), Gaps = 5/369 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ + Y + T +Q + L+ KD+ AQTG+GKT AF L + A N + +P Sbjct: 15 ALAAKKYGSPTPIQAQAIPMLLKGKDLCGIAQTGTGKTAAFALP-SLDHFARNPKPTPLQ 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L ++PTRELA Q+ + + V V GGV ++R+ R L G IVV TPG Sbjct: 74 GCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRTLGRGVDIVVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D I + I + VLDEAD+M+D+GF ++ I PK+R+ L FSAT+ I Sbjct: 134 RLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQNLFFSATMPGEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNAIVFCS 252 LA + D V+V++A ++ + +A V ++ A++N+ +R A++F Sbjct: 194 EALAAQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEK-QALLNLTIRNEDIDRALIFTR 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R + L Q VA+ G SQ +R+ ALQ R G ++ +ATD+AARGID+ Sbjct: 253 TKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVATDIAARGIDVSG 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + VI+ EL + PE +HR GRT RAG +G+++ + + + + + R V + P Sbjct: 313 VSHVINFELPNVPEQYVHRIGRTARAGAEGIAISFVADDERPYLKAIERTTKVKLDVVPL 372 Query: 373 PS--VEAIR 379 P VEA+R Sbjct: 373 PENFVEAVR 381 >gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium radiotolerans JCM 2831] Length = 506 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 181/337 (53%), Gaps = 1/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + ALSE GYV T +Q + P + +D+ AQTG+GKT AF L + L + +DR Sbjct: 11 QPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLSDR 69 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 +P L ++PTRELA Q+ V GGV++ R+ R L G I+ Sbjct: 70 RAPRRGCRVLVLSPTRELANQIAESFTDYGRHLSYTTTVVFGGVTISRQERALAPGVDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + + L + ++ +VLDEAD+MLDLGF ++ I+ P+KR+ L FSAT Sbjct: 130 VATPGRLIDLVDRRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPEKRQSLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA Y D V+V + ++ + V + + +ILR + + Sbjct: 190 MPKNIAGLAAQYLTDPVQVAVTPVATTAERVEQEVIFVHTGAKQALLGHILRDPAIERVL 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R + L + A+ G SQ +R AL +DG RV +ATD+AARGI Sbjct: 250 VFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVLVATDIAARGI 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ + V++ +L + PE+ +HR GRT RAG G+++ Sbjct: 310 DVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAI 346 >gi|313771958|gb|EFS37924.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1] Length = 564 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 64 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 124 GELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLAVYGGVGYESQIDALKAGVD 183 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH++ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ + V V + Q + D + + D+ I IL+ + Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 304 EKVIIFCRTKRACQRLSDDLDARGFKPRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407 >gi|297192239|ref|ZP_06909637.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC 25486] gi|297151271|gb|EFH31061.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC 25486] Length = 539 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/349 (36%), Positives = 188/349 (53%), Gaps = 16/349 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G ++ +QE L L DV+ A+TG+GKT+ FGL L + D R Sbjct: 36 EALEAVGILSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 95 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AP AL + PTREL QV +L V V GG + + L+ G Sbjct: 96 AKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 155 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGRL D + L++SH++A+VLDEADEMLDLGF D+E I+ P KR+ ++F Sbjct: 156 DVIVGTPGRLLDLAGQRKLDLSHVRALVLDEADEMLDLGFLPDVEKIIQQLPAKRQTMLF 215 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239 SAT+ A+ LA+ Y ++ S + + + + YRA + D+ + IL Sbjct: 216 SATMPGAVIGLARRYMSQPTHISATSPDDEGATVRNTTQRVYRAHSM---DKPEMVSRIL 272 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G A++FC T+ + + LA+ F A+ G+L Q R AL+ R+G+ V + Sbjct: 273 QAEGRGLAMIFCRTKRTAADIADQLAQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 332 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ + VI+ + + + LHR GRTGRAG G +V ++ Sbjct: 333 CTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGTAVTLV 381 >gi|296157319|ref|ZP_06840155.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] gi|295892655|gb|EFG72437.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1] Length = 520 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 183/342 (53%), Gaps = 12/342 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E GY T +Q + L D+L AQTG+GKT F L + L SPA Sbjct: 15 AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRL-----NSSPAV 69 Query: 74 AP-------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A AL + PTRELA QV + + V GGV ++ + L++G Sbjct: 70 ANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVD 129 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF DI+ +L P KR+ L+FS Sbjct: 130 IVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFS 189 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I TLA N + +A N + + V + + ++++ H Sbjct: 190 ATFSDEIKTLADNLLDSPALIEVARRNTTAESVAQKIHPVDRDKKRELLTHLIKQHNWFQ 249 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L + +A+ G SQ R+ AL +DG +V +ATD+AAR Sbjct: 250 VLVFTRTKHGANRLAEQLTKDGINSLAIHGNKSQSARTRALAEFKDGTLQVLVATDIAAR 309 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 GIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLV 351 >gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517] gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517] Length = 474 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A + GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + + Sbjct: 62 DACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELAVQ+ E L + V AV +GG+ + + L HI+V TP Sbjct: 119 ---FGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL P++RR +FSAT+S Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q S + + + +D +V+IL + I+F Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQTTIIF 295 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R + +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 296 TRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDI 355 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P ++LV++ +L S+ + +HR GRT RAG+ G ++ V+ Q Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395 >gi|226943654|ref|YP_002798727.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii DJ] gi|226718581|gb|ACO77752.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Azotobacter vinelandii DJ] Length = 558 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 168/532 (31%), Positives = 271/532 (50%), Gaps = 28/532 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ A++ GY + +Q + L D++ AQTG+GKT AF L + S Sbjct: 15 PAVLA-AITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAFALPMLS------- 66 Query: 68 RFSPAS-APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125 R PA P L +APTRELA+QV E ++ GV V GG + + + L+ GA Sbjct: 67 RIDPARREPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRLCDH+R +S +K +VLDEADEML LGF +D+E I + P+ R+ ++F Sbjct: 127 QILVATPGRLCDHLRRDEQLLSTVKHLVLDEADEMLKLGFMEDLEVIFAALPESRQTVLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ +I +A+ + + V IA++ + + ID ++V + A++ +L Sbjct: 187 SATLPHSIREIAEKHLHEPQHVKIAAKTQTVARIDQAHLMVHADQKTAAVLRLLEVEEFD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I F T+ + L ++ AL+G+++Q +R ++ ++DGR + +ATDVAA Sbjct: 247 ALIAFVRTKQATLDLAGALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+P + V + ++ +PE+ +HR GRTGRAGR G ++ ++ +R + + R Sbjct: 307 RGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQ 366 Query: 366 SVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLA--KHDPEKIAAGF 420 V P + + R R LQ PL +S + +++D L A P +AA Sbjct: 367 KVAEVHLPGAQQVLDARIRKLTAALQ-PLLAES-ESSHGELLDRLTAGLGCSPRALAAAL 424 Query: 421 LRIHRAG--LCAPE---EITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FKGSSWF 469 LR G L E E PV VS R+ S G R+ +G Sbjct: 425 LRKATNGQALTLSEVEREQPPVPSVSAPRERRERSDRSMERGVHRERRAPMPLPEGRVRC 484 Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521 ++G++ A+ L+ + G+ R +IG I+V+ + +E+ DG++ L Sbjct: 485 RAALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERL 536 >gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1 [Callithrix jacchus] Length = 455 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|73997167|ref|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 isoform 1 [Canis familiaris] Length = 456 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893] gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893] Length = 474 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A + GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + + Sbjct: 62 DACTSLGYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELAVQ+ E L + V AV +GG+ + + L HI+V TP Sbjct: 119 ---FGLVLAPTRELAVQISESFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL P++RR +FSAT+S Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q S + + + +D +V+IL + I+F Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQTTIIF 295 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R + +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 296 TRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDI 355 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P ++LV++ +L S+ + +HR GRT RAG+ G ++ V+ Q Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395 >gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi] gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi] Length = 518 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 111/358 (31%), Positives = 202/358 (56%), Gaps = 10/358 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + + + +A E + + +Q+ + L+ KDV+ A+TGSGKT AF L + LL Sbjct: 64 LSETLCKACDELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 123 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ AL + PTRELA Q+G + E L + G+ V +GG+ + + L H Sbjct: 124 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAKKPH 177 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +F Sbjct: 178 IIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 237 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + KD V+V ++++ + + + + + +D +V+IL Sbjct: 238 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYLFIPVKYKDVYLVHILNELAGN 297 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + + +L + L G++SQ +R AL + + I+TDVA+ Sbjct: 298 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 357 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E+L Sbjct: 358 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIVSQYDIELYQRIEQLL 415 >gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 432 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 199/354 (56%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+SE GY +T +Q+ + R +DVL SAQTG+GKT AF L + +L Sbjct: 6 FSFAPEIL-RAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQKML 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +N + S AL + PTRELA Q+ + + V GGV + + L+ Sbjct: 65 -DNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDLKVVTVYGGVKMDSQATKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA I++ TPGRL +HI L++S++ +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADIIIATPGRLLEHIIACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDN--AIVNILR 240 +FSAT S A+ LA V+ N+ + ++Q++ I V+ + R + ++ Sbjct: 184 LFSATFSTAVKQLANEMM---VKPNVIAADKQNTTAITVSQVVYPVEQRRKRELLSELIG 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + +VF +TR + + K L + GE +Q R AL+ ++G+ RV +A Sbjct: 241 KKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+ LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354 >gi|91785132|ref|YP_560338.1| putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400] gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400] Length = 543 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 183/342 (53%), Gaps = 12/342 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E GY T +Q + L D+L AQTG+GKT F L + L SPA Sbjct: 37 AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRL-----NSSPAV 91 Query: 74 AP-------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A AL + PTRELA QV + + V GGV ++ + L++G Sbjct: 92 ANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVD 151 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF DI+ +L P KR+ L+FS Sbjct: 152 IVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFS 211 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I TLA N + +A N + + V + + ++++ H Sbjct: 212 ATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQ 271 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L + +A+ G SQ R+ AL +DG +V +ATD+AAR Sbjct: 272 VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAAR 331 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 332 GIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLV 373 >gi|21243124|ref|NP_642706.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv. citri str. 306] gi|21108643|gb|AAM37242.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 458 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 140/413 (33%), Positives = 213/413 (51%), Gaps = 16/413 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P L+ DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPIQAHSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + +VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT +I TLA+ K+ V + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGAD-SAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R + L +D + D+ + D+L Sbjct: 352 RAQALETEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403 >gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371] gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371] Length = 474 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A + GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + + Sbjct: 62 DACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELAVQ+ E L + V AV +GG+ + + L HI+V TP Sbjct: 119 ---FGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL P++RR +FSAT+S Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q S + + + +D +V+IL + I+F Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQTTIIF 295 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R + +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 296 TRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDI 355 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P ++LV++ +L S+ + +HR GRT RAG+ G ++ V+ Q Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395 >gi|224437667|ref|ZP_03658614.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818] gi|313144114|ref|ZP_07806307.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818] gi|313129145|gb|EFR46762.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818] Length = 513 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 116/334 (34%), Positives = 185/334 (55%), Gaps = 9/334 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + + E G+ + + VQ + L+ KD++ AQTG+GKT AF + + + L + N Sbjct: 31 KGIKEAGFSSPSPVQAQSIPIVLQGKDLIAQAQTGTGKTAAFSIPILNAL-SRNKEIE-- 87 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 AL I PTRELA+Q+ E+ L + G + +C+ GG S+ R+ L+ +++ T Sbjct: 88 ----ALVITPTRELAMQISEEVLKL-GRFGRIKTICMYGGQSIKRQCDLLEKKPKVMIAT 142 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ + K VVLDE+DEMLD+GF DDIE I P + L+FSAT+ Sbjct: 143 PGRLLDHLQNGRIENFAPKVVVLDESDEMLDMGFLDDIEEIFKFLPNTHQTLLFSATMPE 202 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA V I + + DI+ + ++ +RD AIV +L +I+F Sbjct: 203 PIKNLALKILDKPEFVKITPTDITNKDIEQQYYIINEGERDEAIVRLLETQNPTKSIIFT 262 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L F+ +AL G++ Q +R A++ ++ + +ATDVA+RG+D+ Sbjct: 263 RTKKEADALATRLVTKGFKAMALHGDMEQWDRRTAIKAFKENEIELLVATDVASRGLDIS 322 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ V + + NPE+ +HR GRTGRAG+KG+++ Sbjct: 323 DVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAI 356 >gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum 'So ce 56'] gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum 'So ce 56'] Length = 478 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 195/378 (51%), Gaps = 12/378 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T +Q+ + P L D+L AQTG+GKT AF L + L P Sbjct: 15 AIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQRLAQSG---GPRQ 71 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L L + PTRELA QV G+ AV GGV + L+ G ++V TP Sbjct: 72 GGLRVLVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEALRRGVDVLVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D L +VLDEAD MLD+GF DI +L P++R+ L+FSAT+ P Sbjct: 132 GRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQTLLFSATMPPD 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + VRV +A +ID R V V SD+ + ++L+ + AIVF Sbjct: 192 ILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLKDPALRRAIVFTR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L+ + VA+ G SQ R AL + G V +ATD+AARGID+ D Sbjct: 252 TKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVATDIAARGIDIDD 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFREANVSV 367 + VI+ +L + PE+ +HR GRT RAG G+++ + + RA ERL ++ + + Sbjct: 312 ISHVINYDLPNIPESYVHRIGRTARAGASGVALSFC--DSEERAYLADIERLIQK-RLPL 368 Query: 368 VWEPAPSVEAIRERDAQR 385 + +P V I R AQ+ Sbjct: 369 LADPGVPVFQIDPRPAQQ 386 >gi|270260820|ref|ZP_06189093.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13] gi|270044304|gb|EFA17395.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13] Length = 452 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 196/371 (52%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q + L +D++ SAQTG+GKT F L L LL+++D Sbjct: 15 AVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ-LLSKHDHPIKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G +E + V GGVS++ + L+ G I+V TP Sbjct: 74 RPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMMKLRGGVDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDD 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V +A N I+ V + + ++ K +VF Sbjct: 194 IKALANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMIGEGDWKQVLVFNR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL +DG+ RV +ATD+AARG+D+ Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA R G ++ ++ + R ERL + + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIAL 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 PGYEPDPSIKA 384 >gi|228915063|ref|ZP_04078662.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844597|gb|EEM89649.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 447 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 192/355 (54%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + L KD++ A+TG+GKT+AF L + Sbjct: 9 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 61 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++ P + AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 62 EKIDPECGDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++ Sbjct: 122 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 182 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVA Sbjct: 242 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ARG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 302 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 >gi|167625797|ref|YP_001676091.1| ATP-dependent RNA helicase RhlB [Shewanella halifaxensis HAW-EB4] gi|189040042|sp|B0TJ29|RHLB_SHEHH RecName: Full=ATP-dependent RNA helicase rhlB gi|167355819|gb|ABZ78432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 436 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/352 (34%), Positives = 199/352 (56%), Gaps = 15/352 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F + P + + +AL+E G+ T +Q L L +KD+ AQTG+GKT+AF +A + Sbjct: 11 FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH 70 Query: 62 LLAENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 LL+ +P A P A+ +APTRELA+Q+ ++ L TG+ V + GG Sbjct: 71 LLS-----TPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYE 125 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 +R+ L G I++GT GR+ D++R +N+S ++AVVLDEAD M DLGF DI F+ Sbjct: 126 VQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRR 185 Query: 176 SP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 P K R ++FSAT+S + LA ++ + +V IA + +I ++ ++ Sbjct: 186 MPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMP 245 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 ++++L + AIVF +T+ S + L + L+G++ Q++R L+ G Sbjct: 246 LLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKG 305 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +ATDVAARG+ + D+ V + +L + E+ +HR GRTGRAG+KG+SV Sbjct: 306 EIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISV 357 >gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84] gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84] Length = 556 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 193/357 (54%), Gaps = 11/357 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + LS+ + T +Q + L+ +D++ AQTG+GKT AFGL + LL + R Sbjct: 29 IVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIEMLLKDAKRPD 88 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + L +APTREL Q+ L+ KT + + V +GG S+++++ L+ G I+V Sbjct: 89 NRTV-RTLILAPTRELVNQIADNLKLFVRKTALRINVVVGGASINKQQLQLERGTDILVA 147 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D I + L++ + +VLDEAD+MLDLGF D+ I P KR+ ++FSAT+ Sbjct: 148 TPGRLLDLISRRALSLGQVSYLVLDEADQMLDLGFIHDLRKISKMVPAKRQTMLFSATMP 207 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---- 246 I LA Y + V+V ++ + ++ V+ N IL+ + N Sbjct: 208 KTIADLAAEYLTNPVKVEVSPPGKAADKVEQYVHFVSGQ---NHKTEILKESISANPDGR 264 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VF T+ + K L F ++ G SQ +R AL+ RDG RV +ATDVAAR Sbjct: 265 AMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVLVATDVAAR 324 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360 GID+P + V + +L P+ +HR GRT RAGR G+++ F P + R ERL Sbjct: 325 GIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRDIERLM 381 >gi|187477179|ref|YP_785203.1| ATP-dependent RNA helicase DbpA [Bordetella avium 197N] gi|115421765|emb|CAJ48276.1| ATP-independent RNA helicase [Bordetella avium 197N] Length = 462 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 22/389 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +T +QE L L +D++ A+TGSGKT AFGL L +L + R AP AL Sbjct: 23 GFEQMTPIQEQSLPLILDGRDLIAQAKTGSGKTAAFGLGLLQSL--DLTRL----APQAL 76 Query: 79 AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV +EL L V V GG + + L GAH+VVGTPGR+ D Sbjct: 77 VLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAGRPQAESLARGAHLVVGTPGRVQD 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+ L+++ LK +VLDEAD M+D+GF DDI I P KR+ L+FSAT I L+ Sbjct: 137 HLARGNLDLAALKTLVLDEADRMVDMGFYDDIVAIASHCPVKRQTLLFSATYPDNIRKLS 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + ++ V + +++ S I+ + +DR +A+ +L ++ + +VFC+T+ Sbjct: 197 ARFLRNPAEVKVQTQH-DASRIEQIFYEIDEADRLDAVATLLAHYRPASTLVFCNTKIRS 255 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + L AL+G+L Q++R L + V +ATDVAARG+D+ +L VI Sbjct: 256 HELIERLRADGISAQALNGDLEQRDRDEILIQFANQSCAVLVATDVAARGLDIQNLSAVI 315 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP--- 373 + ++S + E +HR GR+GR +KG+++ P+ M R AN+ ++ AP Sbjct: 316 NVDVSKDTEVHVHRIGRSGRGEQKGLALSLCSPEEM--------RWANLIEQYQGAPLKW 367 Query: 374 -SVEAIRERDAQRILQDPLFLDSIQGDEK 401 ++++R + A R L+ P+ IQG +K Sbjct: 368 ADIKSLRSK-ADRPLRAPMVTLCIQGGKK 395 >gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens] Length = 455 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|326201867|ref|ZP_08191737.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] gi|325987662|gb|EGD48488.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] Length = 481 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 119/383 (31%), Positives = 205/383 (53%), Gaps = 9/383 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+S + + T VQE ++ + +KD++V +QTGSGKT AF + + L E D Sbjct: 14 ILKAISMLNFKSPTKVQEKVIPAVIEKKDIIVKSQTGSGKTAAFAVPICE--LVEWDE-- 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P AL + PTRELA+QV ++ + + V+ G + + ++L+ H+VVG Sbjct: 70 --NKPQALVLTPTRELAIQVKEDIFNIGRFKRLKVSAIYGKSPFYNQEKELKQKTHVVVG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + S++K +V+DEADEML +GF + IE I+ S K+R ++ SAT+ Sbjct: 128 TPGRIIDHIERNTFDTSNIKYLVIDEADEMLHMGFIEQIETIVSSLSKERVTVLLSATMP 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I TL Y K+ +RV I +N + V + + + +I + I+F Sbjct: 188 IDIETLCNKYMKEPIRVEIEEQNTTTDRVHQERYDVERASKIKLLRDITIVENPDSCIIF 247 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V L + + G + Q++R + + G R IATDVAARGID+ Sbjct: 248 CNTKQKVDDVYDRLLLFKYSCEKIHGGMDQRDRLKVMNDFKRGYFRYLIATDVAARGIDI 307 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ LVI+ ++ + E +HR GRTGR GR G ++ + ++ + + + ++ + Sbjct: 308 DNISLVINYDIPQDGETYVHRIGRTGRIGRDGKAISFVTEDESKYLNDINQYIGKEIILK 367 Query: 371 PAP---SVEAIRERDAQRILQDP 390 P +V +++ +++I+ P Sbjct: 368 EKPDRETVNNLKQEFSEKIVTAP 390 >gi|193212728|ref|YP_001998681.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193086205|gb|ACF11481.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB 8327] Length = 427 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 181/332 (54%), Gaps = 1/332 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL E GY + T +Q + L D+L AQTG+GKT AF L + LL ++ Sbjct: 14 KALDEEGYSSPTPIQAEAIPLLLEGHDLLGCAQTGTGKTAAFALPILQ-LLHQDQEHGRK 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA+Q+G E TG+ V GGV+ + + R L G I+V TP Sbjct: 73 RKIRCLVLTPTRELALQIGESFEAYGRHTGLKSTVIFGGVNQNPQTRTLAGGVDILVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + L++ ++ VLDEAD MLD+GF D++ +L + PKK++ L FSAT+ PA Sbjct: 133 GRLLDLMGQEHLHLRDIEYFVLDEADRMLDMGFIHDVKKVLAALPKKKQSLFFSATMPPA 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + +V + + I+ + V ++++ + ++L+ + + F Sbjct: 193 IVNLAASILHQPKKVTVTPVSSTAEIINQHILFVDRENKNSLLEHLLQNRDISSVLAFTR 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + K L + A+ G SQ R AL + G RV +ATD+AARGID+ D Sbjct: 253 TKHGADKVAKFLTRKNIKAEAIHGNKSQNARQRALGNFKSGETRVLVATDIAARGIDVDD 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 LE VI+ +L + E +HR GRTGRAG +G + Sbjct: 313 LEYVINIDLPNVAETYVHRIGRTGRAGNRGTA 344 >gi|218231258|ref|YP_002367146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus B4264] gi|228939601|ref|ZP_04102185.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972459|ref|ZP_04133068.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979080|ref|ZP_04139429.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407] gi|218159215|gb|ACK59207.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus B4264] gi|228780666|gb|EEM28884.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407] gi|228787281|gb|EEM35251.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820093|gb|EEM66134.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 458 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 191/354 (53%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + + E Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 71 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359 >gi|326940167|gb|AEA16063.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar chinensis CT-43] Length = 455 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 191/354 (53%), Gaps = 7/354 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + L E G T +QE + + KD++ A+TG+GKT+AF L + + E Sbjct: 9 ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S AL +APTRELA+Q+ E++ L + + V GG V ++ R L+ Sbjct: 68 -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVV TPGRL DHIR + +++S+L +VLDEAD+ML GF DIE ILD +P ++ ++F Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LAK Y + + + SE I+ R + + +A+ ++ Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC T+ S+ L + L G++ Q +R ++ R+ + + IATDVAA Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + ++ + E+ +HR GRTGRAG G+++ + ++ E + Sbjct: 303 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356 >gi|126340121|ref|XP_001371236.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 542 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 114/357 (31%), Positives = 197/357 (55%), Gaps = 10/357 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ +A + G+ T +Q + L +D++ A+TGSGKT AF L + + LL Sbjct: 115 VTDVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGSGKTGAFALPILNALLDTP 174 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 175 QRF------FALVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPH 228 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 229 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRKTFLF 288 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D+ +V IL Sbjct: 289 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVYILNELAGN 348 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VFCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 349 SFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVAS 408 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERL 359 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G S+ + Q + +R E L Sbjct: 409 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRIEHL 465 >gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1] gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum WM1] Length = 471 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 1/339 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP +I +AL + Y+ T +QE + L +D+L AQTG+GKT AF + L E Sbjct: 9 IPDII-KALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTIQLLREEK 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL + PTRELA+Q+ T + V GGVS + L+ Sbjct: 68 ESHGAKQNIRALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEEKLKQRVD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL I K +NI H+K ++LDEAD MLD+GF D++ I+ +P K++ L+FS Sbjct: 128 ILVATPGRLLALIDQKIVNIDHIKILILDEADRMLDMGFIHDVKKIIARTPLKKQTLLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I LA K ++ I + I V S++ + ++++L+ + + Sbjct: 188 ATMPPDIAKLAGTILKAPAKIEITPVSSTVDTIGQYVYFVDKSNKKDLLLHVLKDNNIVS 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VF T+ R K L+ + A+ G+ SQ R +AL ++ R+ IATD+AAR Sbjct: 248 ALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLRILIATDIAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 GID+ +L VI+ +L PE +HR GRTGRAG G ++ Sbjct: 308 GIDIDELTHVINYDLPDIPETYVHRIGRTGRAGLGGTAI 346 >gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] Length = 566 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 151/520 (29%), Positives = 258/520 (49%), Gaps = 45/520 (8%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E GY + +Q + L +DV+ AQTG+GKT AF L + S + A + + Sbjct: 22 ALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAFALPILSRIDARS------T 75 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL +APTREL +QV + + TG+ V GG + + + GA +VVGTP Sbjct: 76 ATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVYGGQAYAPQLAGFRRGAQVVVGTP 135 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++ L+ +VLDEADEML +GF+++++ IL +P +++ +FSAT+ Sbjct: 136 GRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVALFSATMPAP 195 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +++ Y +D V + + + ++ R + VA + +A+ +L + I+F Sbjct: 196 IRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRVLEVEPFEAMIIFVR 255 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+++ + L F A++G+LSQ +R + +RDG + +ATDVAARG+D+ Sbjct: 256 TKSATEDVAERLRSRGFATEAINGDLSQPQREKLIAQLRDGTLDLLVATDVAARGLDVER 315 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + V++ ++ ++PE+ +HR GRTGRAGR G ++ ++ E+ A +P Sbjct: 316 ITHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPR-----EKGLLAAIEKATRQPL 370 Query: 373 PSVEAIRERD--AQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPE--KIAAGF 420 +E D A+R+ + F D+I + +V + +HD IAA Sbjct: 371 TEMELPTPADVNARRVAK---FHDAITAALDAPAHAVFRDLVLGYVGEHDVPLADIAAAL 427 Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476 + R L P+ P +R G R +S+ + VG Sbjct: 428 AVMTRQEPGEFLLPPDTAPP-------------AREKPARGAGRPRPVYASY-RIGVGHY 473 Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 Q+ ++ L G++R G I ++ D + VE+ AD Sbjct: 474 QRVTPGQIVGALANEGGLDRADFGRIDIRADYSLVELPAD 513 >gi|28900700|ref|NP_800355.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|28809080|dbj|BAC62188.1| ATP-dependent RNA helicase, DEAD box family [Vibrio parahaemolyticus RIMD 2210633] Length = 421 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 185/355 (52%), Gaps = 8/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q + E L+ V T VQE + L KD+L +AQTG+GKT AFGL + + + Sbjct: 14 IEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQAVQQKK 73 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +P AL + PTRELA QV L T + + GG S+ ++ L+ GA Sbjct: 74 RNGTPH----ALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEEGAD 129 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH+ +NIS +VLDEAD MLD+GF D++ IL P +++++FS Sbjct: 130 ILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFS 189 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I T+A V V ++ N + V + + ++ + Sbjct: 190 ATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 249 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ K L + V+++G+ SQ R AL + G+ R IATDVAAR Sbjct: 250 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 309 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 G+D+ +LE V++ ++ E+ +HR GRTGRAG+ G++V + M R E L R Sbjct: 310 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSL----MSRDEEYLLR 360 >gi|187927522|ref|YP_001898009.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12J] gi|187724412|gb|ACD25577.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J] Length = 560 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 135/375 (36%), Positives = 199/375 (53%), Gaps = 11/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71 A++E GY T +Q + LR D+L AQTG+GKT F L L L A N +P Sbjct: 15 AVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVQTP 74 Query: 72 ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AL + PTRELA QV + + V GGV ++ + L+ G IV Sbjct: 75 QGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPAKRQNLLFSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N ++ R V + + ++R + + Sbjct: 195 FSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L +A+ G SQ R+ AL + G RV +ATD+AARGI Sbjct: 255 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGTLRVLVATDIAARGI 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL RE Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374 Query: 365 VSVV--WEPAPSVEA 377 +V+ +EP P++ A Sbjct: 375 RTVLERFEPDPTIAA 389 >gi|58040739|ref|YP_192703.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] gi|58003153|gb|AAW62047.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] Length = 393 Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 182/335 (54%), Gaps = 6/335 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ G+ + +Q + P L KDVLV +QTGSGKT AF L + L PA Sbjct: 35 LAQAGHKRPSLIQTQAIPPLLEGKDVLVGSQTGSGKTAAFVLPMLQKLTEAG----PAPG 90 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P AL + PTRELA Q L + + V GG S ++ + + +G I+V T GR Sbjct: 91 PRALILEPTRELAAQTAAVCRQLGRRLSLKTRVICGGTSREQQVQSVSDGVDIIVATHGR 150 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF-SATISPAI 193 L D + L + HL +VLDEAD +LD F + + P + +F SAT+ + Sbjct: 151 LLDLVMQADLVLEHLTYLVLDEADRLLDEDFSASMTALTPYFPDQPPQTVFCSATLPEPV 210 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK ++ VRV IA+E+ +I RA+ V D+ + +L+ H +IVF T Sbjct: 211 MDLAKRVTRNPVRVEIAAESFTPKNIRQRAIFVEKDDKPETVARLLK-HFEGRSIVFART 269 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V K L H +V L G+ +Q R+ AL + R GR V + TD+A+RG+D+PD+ Sbjct: 270 KNTVDALAKTLRRHNLRVETLHGDRTQGARNKALDLFRQGRIPVLVTTDIASRGLDIPDV 329 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +LVI+ ++ PE +HR GRT RAGRKG++ +I Sbjct: 330 DLVINMDMPETPEAYVHRIGRTARAGRKGVAFSLI 364 >gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus leucogenys] Length = 455 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 109/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis DSM 44728] Length = 557 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 187/337 (55%), Gaps = 4/337 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALSE G ++QE + +R D++ A TG+GKT+ FG+ L T+ + + Sbjct: 42 ALSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLETVTSAAEGAD--G 99 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTREL +QV R++E G+ V GG + + L+ G IVVGTPG Sbjct: 100 RPQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEALRTGVEIVVGTPG 159 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D ++ K L + + VLDEAD MLDLGF +D+E +L + P++R+ ++FSAT+ AI Sbjct: 160 RLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPEQRQTMLFSATMPDAI 219 Query: 194 TTLAKNYQKDAVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 +L++ + K + ++ +A++N + A L ++ + IL+ IVF Sbjct: 220 VSLSRKFLKQPMTIHAEVATDNAPSAQTKQLAYLTHSLNKIEVLARILQAKDRGLTIVFS 279 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ R L F V A+ G+L Q R AL+ R G+ V +ATDVAARG+D+ Sbjct: 280 RTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFRSGKIDVLVATDVAARGLDVR 339 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ VI+ + + E +HR GRTGRAG G++V + Sbjct: 340 DVTHVINYDSPEDAETYVHRIGRTGRAGATGVAVTFV 376 >gi|146300600|ref|YP_001195191.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium johnsoniae UW101] gi|146155018|gb|ABQ05872.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae UW101] Length = 444 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 131/381 (34%), Positives = 210/381 (55%), Gaps = 12/381 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65 I + I +ALSE V T +Q+ + L E DV+ A+TG+GKT AFGL L + Sbjct: 10 ISEPILKALSELNIVEPTEIQQKTIPLLLAENHDVVGLAKTGTGKTAAFGLPLLQLI--- 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123 + +SA A+ + PTREL Q+ R LE Y + A C GG+ + + L+ Sbjct: 67 ---DTKSSAVQAVILVPTRELGHQIFRNLEDFSKYIPNISIAATC-GGIPIKPQIERLKT 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 HI+V TPGRL D I+ K +++ + +VLDEADEM+ + ++ ++ IL PKK R L Sbjct: 123 PTHIIVATPGRLIDLIQRKAVDLKQTQYLVLDEADEMVSI-LKESLDEILTEIPKKHRTL 181 Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I L +NY K+ V+V+ + E + ID++ ++V ++ + +++ L Sbjct: 182 LFSATLPGTIKQLVQNYLNKNVVQVSASMEVVGNQGIDHQYIVVDPIEKLDVLMHFLNSR 241 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + I+FC T+A+V++ K LA + F A+ G L+Q R ++ R+G + +ATD Sbjct: 242 EGERGIIFCKTKAAVNKLAKNLAINRFSSGAIHGSLTQGIRDRIMEQFREGHINILVATD 301 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 +AARGID+ ++ V++ L E +HRSGRT RAG G+S+ V+ + RE Sbjct: 302 LAARGIDVKEISYVVNYHLPDAYETYVHRSGRTARAGANGLSLTVLQEEEVFEIADFERE 361 Query: 363 ANVSVVWEPAPSVEAIRERDA 383 ++ PS +I E + Sbjct: 362 LGLTFSKFQKPSALSIEENNT 382 >gi|302831193|ref|XP_002947162.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f. nagariensis] gi|300267569|gb|EFJ51752.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f. nagariensis] Length = 481 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 131/380 (34%), Positives = 208/380 (54%), Gaps = 11/380 (2%) Query: 16 SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPASA 74 + R +V+ + +Q L +D++ A TGSGKT+ FGL + + A+ D Sbjct: 79 ATRNFVSPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRHIAAQRDNGVVSGKG 138 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P A+ +APTRELA+Q+ + LE ++ V GGV + L++G +VVGTPGR Sbjct: 139 PFAIVMAPTRELALQINQVLEEAGSQCSVRTVCVYGGVPKGPQVAALKSGVEVVVGTPGR 198 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + D + L + + VLDEAD MLDLGF I I+ + R+ LMFSAT A+ Sbjct: 199 MEDLLNDGVLQLKKVTYAVLDEADRMLDLGFEPHIRAIMGLTRADRQTLMFSATWPAAVQ 258 Query: 195 TLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNIL-RYHGAKN----AI 248 LA + V+V I S++ S I R ++ + RD ++ +L +YHGAK I Sbjct: 259 KLAIAFLSHPVKVTIGSQDLAASHSITQRVDVIDPNARDGRLLELLQQYHGAKGRKNRVI 318 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F + R ++L+ ++ VA+ G++SQQ+R++A+ + G + IATDVAARG+ Sbjct: 319 IFVLYKKEAPRVEQLLSRKGWKAVAIHGDISQQQRTDAVDKFKSGVVPLLIATDVAARGL 378 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNMQRRAE--RLFREAN 364 D+PD+E+VI+ E+ +HR GRTGRAG+ G+ + F + R E + REA Sbjct: 379 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKTGIAHTFFCAGPDKPRAGELINVLREAG 438 Query: 365 VSVVWEPAPSVEAIRERDAQ 384 V E A+++++++ Sbjct: 439 QEVPAELLKFGTAVKKKESK 458 >gi|90408198|ref|ZP_01216366.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3] gi|90310728|gb|EAS38845.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3] Length = 462 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 120/326 (36%), Positives = 183/326 (56%), Gaps = 7/326 (2%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 Y +T +Q L L KDV+ +TGSGKT AF L L L + R +L Sbjct: 24 YTQMTEIQAQSLPHILAGKDVIAQGKTGSGKTAAFALGLLQKLNVKRFRIQ------SLI 77 Query: 80 IAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELA QV E+ L + V GG + L++GAHI+VGTPGR+ DH Sbjct: 78 LCPTRELADQVSSEIRRLARGIHNIKVLTLCGGAPFGPQIGSLEHGAHIIVGTPGRIQDH 137 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L + + +VLDEAD MLD+GF D IE I++ +PK R+ L+FSAT I +++ Sbjct: 138 LRKQTLCLDEVSMLVLDEADRMLDMGFVDAIEDIIEQAPKSRQTLLFSATFPDQIQQISR 197 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 N +D V + + + + ++ Y ++ + +R A+ ++ + +A+VFC+T+ V Sbjct: 198 NILRDPVSIKVEAMHDDNTISQYFYLVRSAEERMLALRLLILQYQPTSAVVFCNTKREVQ 257 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L F +AL G+L Q++R AL + + +ATDVAARG+D+ +L V + Sbjct: 258 EVAEELNNRGFSALALHGDLDQKDRDQALIRFSNRSCSILVATDVAARGLDIENLSAVFN 317 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS 344 L+ + E +HR GRTGRAG KGM+ Sbjct: 318 YNLAHDQEIHVHRIGRTGRAGSKGMA 343 >gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23] Length = 478 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 191/340 (56%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA Y T +QE + L+++D++ A+TGSGKT AF L + LL D+ P Sbjct: 70 EACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPILQALL---DKPQPL 126 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+G+ E L + + AV +GG+ + + L HI+V TP Sbjct: 127 ---FGLVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGKKPHIIVATP 183 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ + KG ++ LK +V+DEAD +LD+ F I+ +L P++RR +FSAT+S Sbjct: 184 GRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTYLFSATLSS 243 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKNAIVF 250 + +L + +D VRV+++S Q + +LV R D ++ ++ K+ IVF Sbjct: 244 KVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVVPQKRKDTYLIYLVNEFTGKSTIVF 303 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 304 TRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVAARGLDI 363 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++V++ +L + + +HR GRT RAG+ G+++ ++ Q Sbjct: 364 SKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQ 403 >gi|241662052|ref|YP_002980412.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia pickettii 12D] gi|240864079|gb|ACS61740.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D] Length = 565 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 135/375 (36%), Positives = 199/375 (53%), Gaps = 11/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFSP 71 A++E GY T +Q + L+ D+L AQTG+GKT F L L L A N +P Sbjct: 15 AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSASQPNKVQTP 74 Query: 72 ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AL + PTRELA QV + + V GGV ++ + L+ G IV Sbjct: 75 QGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N ++ R V + + ++R + + Sbjct: 195 FSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L +A+ G SQ R+ AL + G RV +ATD+AARGI Sbjct: 255 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGTLRVLVATDIAARGI 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL RE Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374 Query: 365 VSVV--WEPAPSVEA 377 +V+ +EP PS+ A Sbjct: 375 RTVLEGFEPDPSIAA 389 >gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099] gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099] Length = 467 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/352 (34%), Positives = 190/352 (53%), Gaps = 4/352 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A G+ +Q + P L +D+ AQTGSGKT AF L + S ++A + A Sbjct: 23 KATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSKIIALGTKRR-A 81 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTRELAVQ+ ++ L V A+ +GGVS + + + G I++ TP Sbjct: 82 KTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAPGVDILIATP 141 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +R L +S K +VLDE D MLD+GF +D++ I ++ R+ +FSAT+ Sbjct: 142 GRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQTALFSATMPDE 201 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK K+ VR+ ++ ++ ++I V + + +L K+ I+F Sbjct: 202 IAELAKGLLKNPVRIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTMLADEAMKSVIIFSR 261 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R TK L F+ + G SQ R AL R+G R+ +ATD+AARGID+P Sbjct: 262 TKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFREGSVRILVATDIAARGIDVPG 321 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--PQNMQ-RRAERLFR 361 + V++ +L E+ +HR GRTGR G G+++ + +N + R+ ER+ R Sbjct: 322 ISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQVERIIR 373 >gi|167894911|ref|ZP_02482313.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 7894] Length = 483 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 52 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 110 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 111 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 170 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 171 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 224 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 225 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 284 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 285 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 344 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 345 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 404 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 405 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 442 >gi|90020294|ref|YP_526121.1| ATP-dependent RNA helicase DbpA [Saccharophagus degradans 2-40] gi|89949894|gb|ABD79909.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40] Length = 464 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 199/368 (54%), Gaps = 9/368 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L GY +T +Q L + KDV+ +TGSGKT AFGL L ++L + RF Sbjct: 20 QNLESLGYNTMTPIQAQSLPNIIAGKDVIGQGKTGSGKTAAFGLGLLNSL--DVKRFYVQ 77 Query: 73 SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S L + PTRELA QV +E+ L A + V GG+ + L++GAHIVVGT Sbjct: 78 S----LVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGAHIVVGT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +H+R L++S L +VLDEAD ML++GF+ ++ I+++ PK+R+ L+FSAT Sbjct: 134 PGRVEEHVRKNNLDLSKLSVLVLDEADRMLEMGFQAALDAIIETMPKQRQTLLFSATFPE 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HGAKNAIVF 250 I +A V + S S I R V D+ V +L H ++A+VF Sbjct: 194 EIQAIASRIMTAPVMTQVES-THDTSTIKQRFYKVDNDDQRLLAVRLLLLQHKPESAVVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ LA H F +AL G+L Q++R L +G A V +ATDVAARG+D+ Sbjct: 253 CNTKRETQMVADDLAGHGFTALALHGDLEQRDRDLTLVRFANGSATVLVATDVAARGLDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L+ VI+ ++ + E +HR GRTGRAG KG++ + + + RL VV + Sbjct: 313 ESLDAVINYHIARDMEVHVHRIGRTGRAGAKGIACSIYSEKEHFKLARLEETMGQQVVND 372 Query: 371 PAPSVEAI 378 P + Sbjct: 373 KLPPTSVL 380 >gi|323698575|ref|ZP_08110487.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132] gi|323458507|gb|EGB14372.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans ND132] Length = 645 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 192/347 (55%), Gaps = 8/347 (2%) Query: 3 IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 F+N+P+ + +A G+ L VQE + L +DV+V A+TGSGKT AF L L L Sbjct: 23 TFDNLPEKLRQACDRAGWDRLMPVQERAIPFLLDNQDVMVQARTGSGKTGAFVLPLMEKL 82 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 AL + PTRELA QV +E L VVAV GGV + + Sbjct: 83 DPSRHTCQ------ALVMVPTRELAKQVAQEARTLAGDNLRVVAV-YGGVGYKEQLDAFR 135 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RR 181 GA++VVGTPGR+ DH+ + L + L+ V+ DEAD ML +GF D+ + P+ Sbjct: 136 EGANLVVGTPGRILDHLMRRNLTLDDLRVVIFDEADRMLSVGFYPDMVEVKRYLPRNIDG 195 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 MFSAT P++ LA+ + ++++S+ S I ++ V V ++ ++ ++ Sbjct: 196 AYMFSATFPPSVLRLAEEFMVKPEFLSLSSDEENVSAIAHQFVEVPAMGKERKLIKLIEL 255 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +A++FC+T+ +V +L++ F L+ +L+Q +R + +++G+ R +AT Sbjct: 256 ENPTSALIFCNTKRNVEFTAALLSQFGFDAEGLTSDLTQNKREALMARIKEGKLRFLVAT 315 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARGID+P+L V E +PE+ +HR+GRTGRAG G ++ ++ Sbjct: 316 DVAARGIDIPELSHVFMMEPPEDPESYVHRAGRTGRAGATGTAITLV 362 >gi|319408783|emb|CBI82440.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1] Length = 454 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 201/371 (54%), Gaps = 11/371 (2%) Query: 1 MKIFEN------IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54 M I EN IP ++ E L G +Q+ + L+++D+L AQTGSGKT+AF Sbjct: 1 MNIKENAFIKLGIPTLLTENLFIAGINKPKPIQKQAIPVMLKKRDILGIAQTGSGKTLAF 60 Query: 55 GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114 GL + S +LA D+ P +A AL + PTRELAVQ+ + + + + + +GGVS Sbjct: 61 GLPVLSQILALGDKRYPKTA-RALILVPTRELAVQIEESIRMVAKGSHLSTCLILGGVSR 119 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + ++ G +++ TPGRL D + K +++S + +VLDEAD MLD+GF D++ I Sbjct: 120 FAQIKRMKTGVDVLIATPGRLMDLVSEKCIDLSQSRFLVLDEADRMLDMGFIRDVQRIAK 179 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 +KR+ +FSAT+ I TLAKN + V++ I + + I + V S++ + Sbjct: 180 LLHEKRQTALFSATMPREIVTLAKNLLNEPVKIEIVPQGTVATKITQKLYCVPTSEKKSV 239 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + L + I+F T+ + L + + V A+ G S R AL+ R+G Sbjct: 240 LNKFLTDPALASVIIFTRTKHGADAVARSLTKAGYSVAAIHGNKSHAARQRALKAFREGS 299 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ- 353 + +ATD+AARGID+P + VI+ +L EN +HR GRTGR G ++ + + ++ Sbjct: 300 VGILVATDIAARGIDVPGVSHVINYDLPDEAENYVHRIGRTGRNDTSGNAITLFDEKVEQ 359 Query: 354 ---RRAERLFR 361 R ER+ R Sbjct: 360 VRLRAVERVIR 370 >gi|157369574|ref|YP_001477563.1| ATP-dependent RNA helicase RhlE [Serratia proteamaculans 568] gi|157321338|gb|ABV40435.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568] Length = 456 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 197/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q + L +D++ SAQTG+GKT F L L LL+++D Sbjct: 15 AVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ-LLSKHDHAVKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G +E + V GGVS++ + L+ G ++V TP Sbjct: 74 RPVRALILTPTRELAAQIGENVESYSKYLRLRSLVVFGGVSINPQMMKLRGGVDVLVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLEHQRAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDD 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V +A N I+ V + + ++ K +VF Sbjct: 194 IKGLANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMIGEGDWKQVLVFNR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL +DG+ RV +ATD+AARG+D+ Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA R G ++ ++ + R ERL + + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIAL 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 PGYEPDPSIKA 384 >gi|24374643|ref|NP_718686.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24349273|gb|AAN56130.1|AE015749_7 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 427 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/381 (33%), Positives = 200/381 (52%), Gaps = 4/381 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 +G L+E GYV+ T VQ A + L +DVL A TGSGKT AF L L L Sbjct: 20 LGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADK 79 Query: 71 PASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIV 128 A L + PTRELA QV L + G + + GGVSV+ + + L+ GA ++ Sbjct: 80 SAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVL 139 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + L ++ + A VLDEAD ML LGF +++E +L + P++++ L+FSAT Sbjct: 140 VATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSAT 199 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + L + ++ SE Q S I+ R + V + + ++++ H A+ Sbjct: 200 FPEEVRALTTKLLHQPLEYHLQSE--QESTIEQRVITVNREQKTALLAHLIKQHQWSQAL 257 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F S + + + + L++ G+ +Q R+ L ++G V IATD+AARGI Sbjct: 258 IFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGI 317 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ L +VI+ +L +P + +HR GR+GRAG G++V +I + ++ + +V Sbjct: 318 DIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLV 377 Query: 369 WEPAPSVEAIRERDAQRILQD 389 E P EA E + + Q+ Sbjct: 378 REQIPGFEANAEIPLEVLAQE 398 >gi|295425677|ref|ZP_06818364.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664] gi|295064693|gb|EFG55614.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664] Length = 493 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 186/342 (54%), Gaps = 8/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +Q + L KDV+ AQTG+GKT AFGL + L Sbjct: 14 KAIKRSGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPILQNLDKHEKTIQ-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131 A+ I PTRELA+Q EL L V V GG + R+ R L++ I+VGT Sbjct: 72 ----AVIIEPTRELAIQTQEELFRLGRDEHARVQVVYGGADIGRQIRSLKHHVPAILVGT 127 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ +++S K VVLDEADEMLD+GF DIE IL ++++ L+FSAT+ Sbjct: 128 PGRLLDHLKRGTIDLSKTKTVVLDEADEMLDMGFIQDIESILKYVGERKQTLLFSATMPK 187 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + D V I ++ ID V S++ + + ++ G A+VF Sbjct: 188 PILQIGEKFMHDPEVVKIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R + L+ R G+ + +ATDVAARG+D+ Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKQFRAGKLEILVATDVAARGLDIS 307 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349 >gi|260102329|ref|ZP_05752566.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus helveticus DSM 20075] gi|260083862|gb|EEW67982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus helveticus DSM 20075] gi|328463453|gb|EGF35104.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC 5463] Length = 503 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 191/342 (55%), Gaps = 4/342 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ G+ T +QE + L+ KDV+ AQTG+GKT AFGL + ++ + + Sbjct: 14 KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQSI--DKKEKAIQ 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131 + A+ I PTRELA+Q EL L V V GG + R+ R L Q+ I+VGT Sbjct: 72 AIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKQHAPSILVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ +++ + VVLDEADEMLD+GF DIE IL + ++ L+FSAT+ Sbjct: 132 PGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCKQTLLFSATMPK 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I + + + KD V I ++ ID V S++ + + ++ G A+VF Sbjct: 192 PILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + + G+LSQ R L+ R+G+ + +ATDVAARG+D+ Sbjct: 252 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDIS 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ +P++ +HR GRTGRAG+ G+SV FV P + Sbjct: 312 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEI 353 >gi|220933289|ref|YP_002512188.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994599|gb|ACL71201.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 602 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 164/531 (30%), Positives = 258/531 (48%), Gaps = 40/531 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL++ GY T +Q + P L +D+L AQTG+GKT AF L S L +++R Sbjct: 22 KALTDTGYEAPTPIQAEGIPPLLAGRDLLGQAQTGTGKTAAFALPALSRLDLKDNRTQ-- 79 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L +APTRELA+QV + YA+ G V GG + + L GA +VVG Sbjct: 80 ----VLVLAPTRELAIQVAEAFQ-TYARHLPGFHVLPIYGGQPYGIQLKQLSRGAQVVVG 134 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R L + L+ +VLDEADEML +GF DD+E+IL+ +P R++ +FSAT+ Sbjct: 135 TPGRVMDHMRRGTLKLDALRTLVLDEADEMLRMGFIDDVEWILEQTPASRQVALFSATMP 194 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A + K+ V I S + I R V+ + +A+ +L ++F Sbjct: 195 EVIRRVAHTHLKEPAEVRIRSATTTATTIRQRYWRVSGLHKLDALTRLLETEPFDAMLIF 254 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L AL+G++ Q +R ++ ++ G+ + +ATDV ARG+D+ Sbjct: 255 VRTKTETVELAERLTARGHACEALNGDIPQNQRERVVERLKKGQLDILVATDVVARGLDV 314 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSV 367 + V++ ++ + E+ +HR GRTGRAGR G ++ FV P Q M + ER R+ + Sbjct: 315 ERISHVLNYDIPHDTESYVHRIGRTGRAGRTGEAILFVAPREQRMLKAIERATRQPIEPM 374 Query: 368 VWEPAPSVEAIR-----ERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A V A R ER + + D L FL+ + +++ +P +IAA Sbjct: 375 HMPTAGDVNAQRIARFKERINEALGSDDLEPFLELVTDYQQE------TGAEPLEIAAAL 428 Query: 421 LRIH--RAGLCAPEEITPVSLVSGRDRFRDDS------RAFKVGGGSRD--NFKGSS--- 467 R+ + L E P R D+ R K G S KG Sbjct: 429 ARLAQGKEPLLLDERAPPPPRAEFMPRPERDTGRAEKPRPRKSGAHSEAPLPLKGQPDVA 488 Query: 468 --WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516 F + VG + L+ + +G++ Q IG I + + T V++ AD Sbjct: 489 MERFVVDVGHAHGLKPGNLVGAIANEAGLDSQYIGHIDIGDETTTVDLPAD 539 >gi|167739208|ref|ZP_02411982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 14] Length = 460 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 49 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 107 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 108 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 167 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 168 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 282 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 341 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 342 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 401 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 402 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 439 >gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus DSM 15470] gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus DSM 15470] Length = 510 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 111/343 (32%), Positives = 195/343 (56%), Gaps = 8/343 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+++ +A+ + G+ T +Q+ + + KD++ AQTG+GKT AFG+ + + Sbjct: 11 VPEIM-KAIEDMGFEEPTPIQKVSIPAAMEGKDLIGQAQTGTGKTAAFGIPILEKI---- 65 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P A+ ++PTRELA+Q E+ L + GG + R+ R L+ + Sbjct: 66 --DTTEKGPQAIVLSPTRELAIQSAEEMNRLAQYLPIHALPIYGGQDIERQFRALRKKPN 123 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL DH++ +++SH++ +VLDE DEM+D+GF DDI IL P++R+ + FS Sbjct: 124 IIVATPGRLMDHMKRGTIDLSHVQILVLDEGDEMVDMGFIDDIRTILAGMPEERQTMFFS 183 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I LA+++ +D V V I + ++ + + + + + +L + Sbjct: 184 ATMPAPIRELAESFLRDPVLVKIKAATVTIDLVEQEYIELPDMQKFDCLCRLLDMENPEL 243 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF T+ T+ L + + L G+LSQQ+R ++ ++G + +ATDVAAR Sbjct: 244 AIVFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGTIDILVATDVAAR 303 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348 G+D+ + V + ++ + E +HR GRTGRAG+ G+++ FV+ Sbjct: 304 GLDISGVTHVYNFDMPQDSETYVHRVGRTGRAGQTGLAMTFVV 346 >gi|255728265|ref|XP_002549058.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404] gi|240133374|gb|EER32930.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404] Length = 531 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 121/320 (37%), Positives = 189/320 (59%), Gaps = 17/320 (5%) Query: 35 LREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93 L +KDV+ A+TGSGKT AFG+ A+ S + +N S L I+PTRELA+Q+ Sbjct: 155 LSKKDVIGVAETGSGKTFAFGVPAINSIITTKNKNLS------VLCISPTRELALQIYDN 208 Query: 94 LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153 L L T V GGVS + + ++ A++VV TPGRL D I +N+S++ +V Sbjct: 209 LIELTNDTNVKCVAVYGGVSKDEQIQKIKT-ANVVVATPGRLVDLINDGAINLSNIDYLV 267 Query: 154 LDEADEMLDLGFRDDIEFILDSS-PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212 LDEAD ML+ GF +DI+ I+ S+ + R+ LMF+AT + LA N+ K ++V + Sbjct: 268 LDEADRMLEKGFEEDIKRIISSTNAEDRQTLMFTATWPKEVRELANNFMKSPIKVTVGDR 327 Query: 213 NRQHSD--IDYRAVLVALSDRDNAIVNIL-RYHGAKN-----AIVFCSTRASVSRFTKVL 264 + ++ I +V D++ ++N+L +Y G N +VF + SR +L Sbjct: 328 DELSANKRITQIVEVVNKFDKEKKLINLLHKYQGNNNDSENKILVFALYKKEASRIENLL 387 Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324 + FQV A+ G+LSQQ+R+ AL + G+ + +ATDVAARG+D+P++++VI+ Sbjct: 388 KRNRFQVAAIHGDLSQQQRTQALNSFKSGQCNLLLATDVAARGLDIPNVKVVINLTFPLT 447 Query: 325 PENLLHRSGRTGRAGRKGMS 344 E+ +HR GRTGRAG+ G++ Sbjct: 448 IEDYVHRIGRTGRAGKTGIA 467 >gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473] gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473] Length = 453 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 198/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY+ T +Q + L+ +D++ SAQTG+GKT F L L +L EN + Sbjct: 15 AIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLLQ-ILNENAQPIKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G +E + V GGVS++ + L+ G I+V TP Sbjct: 74 RPVRALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V +A N I V + + + ++ + +VF Sbjct: 194 IKGLASKLLNNPASVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGSQNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL +DG+ RV +ATD+AARG+D+ Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSVV 368 L V++ EL + PE+ +HR GRTGRA R G ++ ++ + R ERL RE + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCIDEHKLLRDIERLLKREIPRFAI 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 EGYEPDPSIKA 384 >gi|149713746|ref|XP_001501494.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 [Equus caballus] Length = 455 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404] gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404] Length = 483 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 120/346 (34%), Positives = 195/346 (56%), Gaps = 10/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ E++ + T +Q + L KD++ AQTGSGKT AF + + +L Sbjct: 76 VPDLL-ESIENMKFTKPTPIQSESIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQ 134 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + L +APTRELA Q+ + L + G+ + +GG+ + + RDL H Sbjct: 135 QPY------FGLVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH 188 Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGR+ DH+ KG + +LK +V+DEAD +LD+ F ++ IL P KR +F Sbjct: 189 IIVATPGRIMDHLEHTKGFTLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLF 248 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ I L + + VRV ++S+ + ++ +LV ++ ++++L +K Sbjct: 249 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMSK 308 Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T A R T +LA L F V L G+LSQ +R +L + A + IATDVA Sbjct: 309 SIIVFTRTVAHAQR-TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANILIATDVA 367 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++VI+ ++ ++ + +HR GRT RAGR G S+ +I Q Sbjct: 368 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 413 >gi|163739630|ref|ZP_02147039.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis BS107] gi|161387089|gb|EDQ11449.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis BS107] Length = 458 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/378 (33%), Positives = 204/378 (53%), Gaps = 7/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + ++E GY + T +Q + L +DVL AQTG+GKT AFG+ L + ++ + Sbjct: 24 GLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQMM-Q 82 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R A L +APTRELA Q+ L+ L T + + +GGVS++ + L G Sbjct: 83 YGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLSRGT 142 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D + L++ +VLDEAD+MLDLGF + I P++R+ ++F Sbjct: 143 DILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQTMLF 202 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + +A +Y + VR+ + + I +A +++ + + +L H + Sbjct: 203 SATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAHKDE 262 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + + K L+ F A+ G SQ +R AL + G ++ +ATDVAA Sbjct: 263 RTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATDVAA 322 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM-QRRAERLFREA 363 RG+D+PD++ V + EL + P+ +HR GRT RAG+ G +V F P M + +A + Sbjct: 323 RGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKAIQKTMNL 382 Query: 364 NVSVV----WEPAPSVEA 377 N+ V WE P +A Sbjct: 383 NIPVASGRPWEVLPDAKA 400 >gi|218709165|ref|YP_002416786.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32] gi|218322184|emb|CAV18298.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 418 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 114/325 (35%), Positives = 182/325 (56%), Gaps = 6/325 (1%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q+A++ + KDVL AQTGSGKT+AFGL L +++ + + A+ I PT Sbjct: 30 TEIQQAVIPTIIAGKDVLALAQTGSGKTLAFGLPLLNSIKHDVNELQ------AIIIVPT 83 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA QV + LE + + GGV + +++ L +V+ TPGRL I+ Sbjct: 84 RELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLLEKPQLVIATPGRLHAVIQENK 143 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L ++ K+++LDEAD +LD+GF D++ I+ + PKK + L+FSAT+ + + + + Sbjct: 144 LELTQCKSIILDEADRLLDMGFWPDVQTIISALPKKHQTLLFSATLPKELISQTEALLVN 203 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 V+V EN + I+ LV + A++ +L H +VF + + TK Sbjct: 204 PVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQHAWSQVLVFIGAKDNADALTKR 263 Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323 L++ V AL G +Q+ER AL+ ++G+ RV IATDV ARGI + L +VI+ +L S Sbjct: 264 LSKAKISVNALHGNKNQEEREQALESFKNGKTRVLIATDVMARGIHIDQLPVVINFDLPS 323 Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348 + +HR GRT RAG G ++ ++ Sbjct: 324 HSATYVHRVGRTARAGSTGSAISLV 348 >gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14] gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14] Length = 449 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 16/363 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL G+ T +Q + P L+ +D+L +AQTG+GKT F L L L E + + A Sbjct: 14 KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 ++ AL + PTRELA QV + + AV GGVS++ + L+ G I+V TP Sbjct: 73 NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D R + + L+A+VLDEAD MLDLGF +++ + + P+KR+ L+FSAT S A Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I TLA+ +D + + ++ N + V V + ++L+ + + A+VF Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQALVFAK 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR SV +L ++ G+ Q R ALQ + G + +ATDVAARG+D+ + Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357 + LV++ +L E+ +HR GRTGRAG G +V +I Q +QRR E Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372 Query: 358 RLF 360 F Sbjct: 373 PDF 375 >gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus] gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus] Length = 641 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 115/328 (35%), Positives = 182/328 (55%), Gaps = 5/328 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY+ T +Q+ + + ++D++ AQTGSGKT AF L + +TLL +ND +P + P + Sbjct: 236 GYLKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPIINTLLNDNDDMTPGN-PFVV 294 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA+Q+ E T + V V GG + + ++ NG HI+V TPGRL D Sbjct: 295 VVAPTRELALQISEEARKFARGTILKVVVAYGGTATRHQIDNVNNGCHILVATPGRLLDF 354 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKRRMLMFSATISPAIT 194 + + + +K VVLDEAD MLD+GF +E +++ S ++R+ LMFSAT I Sbjct: 355 VDRQAVTFDRVKFVVLDEADRMLDMGFMPAVEKMMNHETMKSKEERQTLMFSATFPGQIQ 414 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 LA + + + V + SD++ V + + IL + K +VF T+ Sbjct: 415 ELAGQFLNNYIFVAVGIVGGASSDVEQNIYEVTKFQKRKKLEEILESNDPKGTLVFVETK 474 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 + +L+E F ++ G+ Q+ER AL+ + G+ + IAT VAARG+D+ ++ Sbjct: 475 RNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGKMYILIATSVAARGLDIRNVA 534 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKG 342 VI+ +L ++ +HR GRTGR G KG Sbjct: 535 HVINYDLPKGIDDYVHRIGRTGRVGNKG 562 >gi|163741384|ref|ZP_02148775.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis 2.10] gi|161385118|gb|EDQ09496.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis 2.10] Length = 458 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/378 (33%), Positives = 204/378 (53%), Gaps = 7/378 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + ++E GY + T +Q + L +DVL AQTG+GKT AFG+ L + ++ + Sbjct: 24 GLPEQLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQMM-Q 82 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R A L +APTRELA Q+ L+ L T + + +GGVS++ + L G Sbjct: 83 YGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLSRGT 142 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D + L++ +VLDEAD+MLDLGF + I P++R+ ++F Sbjct: 143 DILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQTMLF 202 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + +A +Y + VR+ + + I +A +++ + + +L H + Sbjct: 203 SATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAHKDE 262 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + + K L+ F A+ G SQ +R AL + G ++ +ATDVAA Sbjct: 263 RTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATDVAA 322 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM-QRRAERLFREA 363 RG+D+PD++ V + EL + P+ +HR GRT RAG+ G +V F P M + +A + Sbjct: 323 RGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKAIQKTMNL 382 Query: 364 NVSVV----WEPAPSVEA 377 N+ V WE P +A Sbjct: 383 NIPVASGRPWEVLPDAKA 400 >gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] Length = 449 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 16/363 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL G+ T +Q + P L+ +D+L +AQTG+GKT F L L L E + + A Sbjct: 14 KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 ++ AL + PTRELA QV + + AV GGVS++ + L+ G I+V TP Sbjct: 73 NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D R + + L+A+VLDEAD MLDLGF +++ + + P+KR+ L+FSAT S A Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I TLA+ +D + + ++ N + V V + ++L+ + + A+VF Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQALVFAK 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR SV +L ++ G+ Q R ALQ + G + +ATDVAARG+D+ + Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357 + LV++ +L E+ +HR GRTGRAG G +V +I Q +QRR E Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372 Query: 358 RLF 360 F Sbjct: 373 PDF 375 >gi|71024093|ref|XP_762276.1| hypothetical protein UM06129.1 [Ustilago maydis 521] gi|74699014|sp|Q4P184|FAL1_USTMA RecName: Full=ATP-dependent RNA helicase FAL1 gi|46101778|gb|EAK87011.1| hypothetical protein UM06129.1 [Ustilago maydis 521] Length = 397 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 113/328 (34%), Positives = 185/328 (56%), Gaps = 17/328 (5%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAPLALAI 80 +++Q+ + P +R +DV+ AQ+G+GKT F +++ T L E AL + Sbjct: 48 SAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQ---------ALVL 98 Query: 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 +PTRELA+Q+ + L V CIGG SV + R L G HIV GTPGR+ D IR Sbjct: 99 SPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIR 158 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 + L ++K ++LDE+DE+L++GF+D I + P ++++ SAT+ + + + Sbjct: 159 RRHLRTKNIKMLILDESDELLNMGFKDQIYDVYRYLPPSTQVVLLSATLPQDVLEMTSKF 218 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASV 257 D VR+ + + I + VA+ + + + ++ A++FC+TR V Sbjct: 219 MTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 276 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + E+ FQV ++ GE+ Q+ER + R G +RV I TDV ARGID+ ++ LVI Sbjct: 277 DWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVI 336 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N EN +HR GR+GR GRKG+++ Sbjct: 337 NYDLPTNRENYIHRIGRSGRFGRKGVAI 364 >gi|332525438|ref|ZP_08401597.1| ATP-dependent RNA helicase DbpA [Rubrivivax benzoatilyticus JA2] gi|332108706|gb|EGJ09930.1| ATP-dependent RNA helicase DbpA [Rubrivivax benzoatilyticus JA2] Length = 473 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 150/407 (36%), Positives = 211/407 (51%), Gaps = 15/407 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ L + GY +T +Q A L P L +D++ A+TGSGKT AF L L + L A+ Sbjct: 20 PAVLAN-LQQLGYECMTPIQAAALPPALAGRDLIAQAKTGSGKTAAFSLPLLARLDAK-- 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF A AL + PTRELA QV +E+ L A+ V V GG ++ + L++GAH Sbjct: 77 RF----ATQALVLCPTRELAEQVSQEIRRLARAEDNVKVLTLCGGAAIRPQLASLEHGAH 132 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184 +VVGTPGR+ DH+ L + L VLDEAD MLD+GF +DI + P KR+ L+ Sbjct: 133 VVVGTPGRVLDHLERGSLALEALTTFVLDEADRMLDMGFAEDIAAVARHCPPPSKRQTLL 192 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT + LA Y +D V +A E S I R V S R +A+ +L+ Sbjct: 193 FSATYPDDVAKLAARYLRDPQEVRLA-ETHAASQIVERFYEVTESQRLHAVGLLLQRFRP 251 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++ + FC+T+ VL + L G+L Q++R L A V +ATDVA Sbjct: 252 ESTLAFCNTKQQCRDLVAVLQAQGIVALELHGDLEQRDRDQVLVRFAHRSASVLVATDVA 311 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+ LE VI+ +++ PE HR GRTGRAG G+ + + R R+ Sbjct: 312 ARGLDISKLEAVINVDITPEPEVHTHRIGRTGRAGESGLVFNLASLDEMGRVGRIDEMQG 371 Query: 365 VSVVWEPAPSVEA-IRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407 VW P +EA + + Q L P+ I G K+ + DVL Sbjct: 372 RQSVWHPLAELEAELAKAGPQPPLLPPMVTLQILGGRKEKIRRGDVL 418 >gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054] gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia HI2424] gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU 1054] gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia HI2424] Length = 516 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 141/400 (35%), Positives = 212/400 (53%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALAST 61 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L A Sbjct: 45 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 103 Query: 62 LLAENDRF--------------SPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 A+ R P + P L + PTRELA+QV G+ L+ L Sbjct: 104 TQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 163 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF +DIE I+ ++P+ R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 218 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 275 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ F+ AL G+ Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFRE---ANVSVVWEP 371 AGR G++V ++ Q +R ER R NV +EP Sbjct: 396 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 435 >gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1] gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1] Length = 524 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 140/395 (35%), Positives = 208/395 (52%), Gaps = 38/395 (9%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-------LAS 60 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L L Sbjct: 49 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 107 Query: 61 TLLAE----------NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGV 103 T + R P + P L + PTRELA+QV G+ L L + Sbjct: 108 TQAQQPREPQSGDRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS-- 165 Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163 +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD MLD+ Sbjct: 166 ----ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDM 221 Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223 GF DDIE I+ ++P R+ ++FSAT+ I +L K+ R+ I + ++I Sbjct: 222 GFIDDIETIVAATPATRQTMLFSATLDGKIGSLTSRLLKEPERIEIVQKLEARTNIAQTV 281 Query: 224 VLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282 V D +D + ++LR AI+F +T+ + LA+ F+ AL G+L Q Sbjct: 282 HYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGA 341 Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR G Sbjct: 342 RNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSG 401 Query: 343 MSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 ++V ++ Q +R ER R NV +EP Sbjct: 402 IAVSLVHHAEQGALKRIERFVRTPLPVNVIEGFEP 436 >gi|313682743|ref|YP_004060481.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM 16994] gi|313155603|gb|ADR34281.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM 16994] Length = 431 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 201/373 (53%), Gaps = 11/373 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++++GY T VQ + L +D+L AQTG+GKT F L L L +DR P Sbjct: 14 KAINDQGYTTPTPVQAQAIPFILEGRDMLAGAQTGTGKTAGFTLPLLQIL---SDRKQPK 70 Query: 73 S--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + AL + PTRELA QVG ++ + AV GGV ++ + L+NG I++ Sbjct: 71 THRKIRALILTPTRELAAQVGESVKLYGKYLPLKSAVIFGGVGINPQITMLRNGVDILIA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ +++S ++ VLDEAD MLD+GF DI ++ PK R+ L+FSAT S Sbjct: 131 TPGRLLDHVGQGTVDLSGVEIFVLDEADRMLDMGFIRDIRRVITILPKVRQNLLFSATYS 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I TLA ++ V +A N + +LV + + + ++ H + +VF Sbjct: 191 DDIKTLANTLLRNPAEVEVARRNTSSELVKQSVILVDCKRKSSLLGELIGKHKWEQVLVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ T+ L + A+ G SQ R+ AL + RV +ATD+AARGID+ Sbjct: 251 TRTKHGANKLTEYLQKIGITAAAIHGNKSQSARTKALDDFKRSSVRVLVATDIAARGIDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFR---EAN 364 L V++ EL + E+ +HR GRTGRAG +G + V V + R E+L +A Sbjct: 311 DALPHVVNFELPNIAEDYVHRIGRTGRAGCEGEALSLVCVDEADYLRGIEKLINKKLDAR 370 Query: 365 VSVVWEPAPSVEA 377 + +EP PS++A Sbjct: 371 IIEGYEPDPSIKA 383 >gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219] gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219] Length = 425 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 193/344 (56%), Gaps = 7/344 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + ++L++ Y + +QE + L D++ AQTG+GKT F L + ++L E Sbjct: 7 NLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPILNSLSKE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 + + AL + PTRELA Q+ ++ ++ + + A C+ GG + + +++G Sbjct: 67 KNH-----SIRALILTPTRELATQIFENIK-MFGRYMHLRACCVYGGSPAAPQLKAIRSG 120 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I++ TPGRL D++ +++ H++ +VLDEAD MLD+GF D+ I+ P R + Sbjct: 121 CDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRITAL 180 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LA++ K+ V I +E S ID + S + +VN+L Sbjct: 181 FSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKKVLVNLLNTESI 240 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K IVF T+ R K L E + + G+ +Q +R NALQ R + R+ IATDVA Sbjct: 241 KKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILIATDVA 300 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ D+ VI+ +L + EN +HR GRTGRA ++G+S+ ++ Sbjct: 301 ARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLV 344 >gi|150016621|ref|YP_001308875.1| DEAD/DEAH box helicase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149903086|gb|ABR33919.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 369 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 116/346 (33%), Positives = 195/346 (56%), Gaps = 19/346 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L++ G + T +Q+ + P +R+ KDV+ A TG+GKT+AF L L + ++++ Sbjct: 16 LNKSGIADPTPIQKQSI-PKIRDGKDVIAEAATGTGKTLAFLLPLLENINSKSNEIQ--- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA+Q+ E L + + GG + + + L N H+++ TPG Sbjct: 72 ---ALILTPTRELAIQITNEANKLKEFNDINILPVYGGKDIASQLKKLNNNIHLIIATPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ K +++S LK +LDEAD+ML +GF++++E I+ P+K+++L FSATI ++ Sbjct: 129 RLLDHLERKTIDLSKLKTFILDEADQMLLMGFKNEVESIISKMPRKKQLLCFSATIDSSV 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRD--NAIVNILRYHGAKNAI 248 LA Y KD + V I + DI A+ +V +DR +A+ +L AI Sbjct: 189 KKLAYRYMKDPIEVFI-----KQDDISLDAIEQDIVETTDRKKRDALCKVLDEDNPFMAI 243 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ V VL + L ++ Q +R ++ R+ + IATDVAARG+ Sbjct: 244 IFCRTKRRVDELEAVLHTRKYNCEKLHSDIPQNKRERIMKSFRNAEIQYLIATDVAARGL 303 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 D+ + + + ++ + E+ +HR GRTGRAG G + +F+ P+N++ Sbjct: 304 DINGITHIYNYDIPESVESYIHRIGRTGRAGESGYTCMFIDPKNIK 349 >gi|299769392|ref|YP_003731418.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1] gi|298699480|gb|ADI90045.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1] Length = 383 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 119/352 (33%), Positives = 200/352 (56%), Gaps = 8/352 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVINDLLHN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + RF P AL +APTRELA+Q+ + + L + + + +GGV ++++ L Sbjct: 69 PIQEQRFR--GEPRALILAPTRELALQIESDAKLLTKFSDLHIVTLLGGVDFDKQKKQLD 126 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 ANFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + + V I E + ++D++ R +VA D+ + +IL Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L ++V LSGE++Q +R L+ + G+ V I Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLEQFKQGKNNVMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ATDVA RGI + + VI+ L ++ +HR GRTGRAG +G+S+ + ++ Sbjct: 307 ATDVAGRGIHVDGVSHVINYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSED 358 >gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii PYR-1] Length = 494 Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 186/344 (54%), Gaps = 11/344 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G + ++QE L L D++ A+TG GKT AFG+ L + + +R P + Sbjct: 24 ALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHRITTDTER--PLT 81 Query: 74 A-PLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAH 126 P AL + PTREL +QV +L ++L A + V GG + LQ G Sbjct: 82 GIPRALIVVPTRELCIQVYEDLVGASKYLMADETRKLTVTAIYGGRPYEPQIEALQKGVD 141 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + L + L +VLDEADEMLDLGF DIE IL P KR+ ++FS Sbjct: 142 VVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILKQIPAKRQAMLFS 201 Query: 187 ATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 AT+ I TLA+ + Q +R + H + A D+ + IL+ G Sbjct: 202 ATMPDPIITLARTFMTQPTHIRAEAPHSSATHDSTEQFAYRAHALDKVEMVARILQAEGR 261 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++F T+ + + L E F+V A+ G+L Q R AL+ R G V +ATDVA Sbjct: 262 GATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQAAREKALKSFRTGEVDVLVATDVA 321 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ D+ VI+ ++ + + +HR GRTGRAG+ G++V ++ Sbjct: 322 ARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLV 365 >gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016] gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016] Length = 449 Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 16/363 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL G+ T +Q + P L+ +D+L +AQTG+GKT F L L L E + + A Sbjct: 14 KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 ++ AL + PTRELA QV + + AV GGVS++ + L+ G I+V TP Sbjct: 73 NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D R + + L+A+VLDEAD MLDLGF +++ + + P+KR+ L+FSAT S A Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I TLA+ +D + + ++ N + V V + ++L+ + + A+VF Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQALVFAK 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR SV +L ++ G+ Q R ALQ + G + +ATDVAARG+D+ + Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357 + LV++ +L E+ +HR GRTGRAG G +V +I Q +QRR E Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372 Query: 358 RLF 360 F Sbjct: 373 PDF 375 >gi|309779776|ref|ZP_07674531.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA] gi|308921353|gb|EFP66995.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA] Length = 404 Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 135/375 (36%), Positives = 199/375 (53%), Gaps = 11/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71 A++E GY T +Q + LR D+L AQTG+GKT F L L L A N +P Sbjct: 26 AVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVQTP 85 Query: 72 ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AL + PTRELA QV + + V GGV ++ + L+ G IV Sbjct: 86 QGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 145 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT Sbjct: 146 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPAKRQNLLFSAT 205 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N ++ R V + + ++R + + Sbjct: 206 FSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 265 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L +A+ G SQ R+ AL + G RV +ATD+AARGI Sbjct: 266 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGTLRVLVATDIAARGI 325 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL RE Sbjct: 326 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 385 Query: 365 VSVV--WEPAPSVEA 377 +V+ +EP P++ A Sbjct: 386 RTVLERFEPDPTIAA 400 >gi|258516456|ref|YP_003192678.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780161|gb|ACV64055.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 446 Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 190/342 (55%), Gaps = 11/342 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L E G T +Q + + KD+L +QTG+GKT+AF L + + + Sbjct: 22 INDFLRENGITEPTPIQVQAIPVLMTGKDLLAQSQTGTGKTLAFLLPVLEKIEVNKPQVQ 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +L I PTRELA+Q+ E + L K G+ + GG V R+ + L+ H+V+G Sbjct: 82 ------SLIITPTRELALQITGEAKNLGDKLGINILSVYGGQDVERQIKKLKGHIHMVIG 135 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DHIR K +++S + +VLDEAD+ML +GF +D+E I+ SP K++ ++FSAT+ Sbjct: 136 TPGRLLDHIRRKTISLSGVSKLVLDEADQMLHMGFLEDVEEIIRKSPVKKQTMLFSATLP 195 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGAKNAI 248 P I LA Y + + I S RQ + +++ L +++ + ++ + AI Sbjct: 196 PRIRALAARYMRKPADIRIQS--RQVILDKIKQIVIELEEKEKLTQLCRLIDENQPYLAI 253 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC TR S L + + L G+LSQ +R ++ R ++ +ATD+AARG+ Sbjct: 254 IFCHTRQRASELAAALIQRGYAADELHGDLSQAKRQQVMKRFSSARLQLLVATDIAARGL 313 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 D+ + V ++S E+ +HR GRTGRAG G +V FV+P Sbjct: 314 DIEGVTHVYSYDISHYLESYIHRIGRTGRAGESGTAVTFVLP 355 >gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales bacterium ALC-1] gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales bacterium ALC-1] Length = 436 Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 135/375 (36%), Positives = 198/375 (52%), Gaps = 12/375 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S++GY + +Q + P L EKDVL SAQTG+GKT F L L L + R Sbjct: 15 AISKKGYETPSPIQAKAIPPVLEEKDVLASAQTGTGKTAGFTLPLLHLL---SQRPVQKH 71 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QV ++ + V GGV+ + ++ G ++V TP Sbjct: 72 RPIRALILTPTRELAAQVHTNVKEYSEFLNIKSTVIFGGVNQKPQVATIRKGVDVLVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D L++ ++ VLDEAD MLD+GF DIE ++ P KR+ LMFSAT S Sbjct: 132 GRLIDLESQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQNLMFSATFSKD 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + V+V EN ID + VA + I+ ++ K +VF Sbjct: 192 IKKLAYSILNNPVKVEATPENTAVEVIDQKVYRVAKGKKTGLIIKLISEGNWKQVLVFTR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ ++ K + A+ G SQ R+ AL + G+ RV +ATD+AARG+D+P Sbjct: 252 TKHGANKLCKKMISAGITAAAIHGNKSQGARTKALAGFKSGKVRVLVATDIAARGLDIPL 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF-REANVSVV 368 L V++ E+ + E+ +HR GRTGRAG G ++ ++ + R E+L + V VV Sbjct: 312 LPHVVNYEIPNISEDYVHRIGRTGRAGASGEAISLVSADETTYLRSIEKLIDMKIEVEVV 371 Query: 369 --WEPAP--SVEAIR 379 +EP P S E I+ Sbjct: 372 EGFEPDPNASTEPIK 386 >gi|293376735|ref|ZP_06622957.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909] gi|325845681|ref|ZP_08168964.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1] gi|292644601|gb|EFF62689.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909] gi|325488282|gb|EGC90708.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1] Length = 479 Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 114/354 (32%), Positives = 198/354 (55%), Gaps = 6/354 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 + + I ++L+ GY + T VQ +++ L ++D++V ++TGSGKT AFG+ + L + Sbjct: 8 QLSESILKSLTGLGYEHATEVQASVIPTVLNKQDLIVQSKTGSGKTAAFGIPICEMLDWD 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P AL + PTRELA+Q+ E+ + + V G + R+L+ Sbjct: 68 ENK------PQALILTPTRELALQIKEEISNIGRFKRIKVTAVYGKSPFKEQARELKQKT 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ DH+ L++ L VLDEADEML +GF + +E I++ +P+KR+ ++F Sbjct: 122 HIVVGTPGRVQDHLERGTLSLDKLSLFVLDEADEMLKMGFIEVVENIMNEAPRKRQTMLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L+++Y + I S +++ V ++ + ++L + Sbjct: 182 SATMPDRIKKLSQHYLTHPQEIKIESPTLTTDLVEHALYEVREQEKVKLLQDLLMVENPE 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++FCST+ +V + L++ + + L G L Q+ER ++ + GR ++TDVAA Sbjct: 242 RCMIFCSTKEAVDALYRNLSQKGYPIERLHGGLDQKERFETMKNFKIGRFAYLVSTDVAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RGID+ + VI+ +L ++ +HR GR GRAG+KG ++ + QR E + Sbjct: 302 RGIDVSGVSHVINYDLPPEKDSFVHRIGRAGRAGQKGKAITFATRFDQRWLEEI 355 >gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 474 Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 121/413 (29%), Positives = 218/413 (52%), Gaps = 9/413 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+SE G+ T +Q + + +D++ AQTG+GKT AFG+ + N++ Sbjct: 15 KAISEMGFEETTPIQRQAIPQVMNGQDIIGQAQTGTGKTAAFGIPYIERIQDPNNK---- 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA+QV E+ L G+ GG S+ + + L+ I+VGTP Sbjct: 71 -EIKGLVVTPTRELAIQVAEEINRLGQYNGITALPIYGGQSIGHQIKALKKRPQIIVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K + ++++ V LDEADEML++GF +DI+ IL +P ++ LMFSAT+ Sbjct: 130 GRLIDHLNRKTIKLNNVNMVTLDEADEMLNMGFIEDIKTILQKTPSHKQTLMFSATMPGP 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +LA+ + D + ++ I+ + V V D+ + ++ + AIVF Sbjct: 190 IKSLAEQFMNDPEIIRTKTKEITVPSIEQQYVEVKEGDKFDVFCRLVDSQSPEKAIVFGR 249 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V + L + + + G++ Q +R + ++ R G + +ATDVA+RG+D+ Sbjct: 250 TKRRVDELYQALKKRGYFAEGIHGDMPQTKRDHVIKNFRTGATELLVATDVASRGLDVTG 309 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + + + ++ + ++ +HR GRTGRAG+ G +V ++ + + + + P Sbjct: 310 ISHIYNFDIPQDADSYVHRIGRTGRAGQSGAAVTLVTPREKGHLNLIEQSIKRQIPRRPK 369 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEK---KMVDVLLAKHDPEKIAAGFLR 422 PSV+ E Q+I + L ++ + + K+ + LL ++D ++ AG L+ Sbjct: 370 PSVDEALE-GKQKIAVEKLLSEAKDKNARQYHKLAEELLEENDSIELVAGALK 421 >gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1] gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1] Length = 483 Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 198/374 (52%), Gaps = 15/374 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T +Q + L D+L AQTG+GKT F L + L A F PA+ Sbjct: 15 AVNELGYNEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLNA----FQPAN 70 Query: 74 AP-----LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A AL + PTRELA QV + + V GGVS++ + L+ G IV Sbjct: 71 ANGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDALKRGVDIV 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT Sbjct: 131 VATPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSAT 190 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + + +A N I + V + + +++R H + Sbjct: 191 FSDEIKALADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKREMLTHLIREHNWFQVL 250 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L + +A+ G SQ R+ AL + G +V +ATD+AARGI Sbjct: 251 VFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKAGTLQVLVATDIAARGI 310 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ EL + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 311 DIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKPLLRDIERLIKREIP 370 Query: 365 VSVV--WEPAPSVE 376 V+ +EP P+ + Sbjct: 371 QQVIAGFEPDPNAK 384 >gi|209544711|ref|YP_002276940.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209532388|gb|ACI52325.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 427 Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 129/332 (38%), Positives = 182/332 (54%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E GY + T +Q + L +D+L AQTG+GKT AF L L L A R +P Sbjct: 17 ALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLLHRL-AMAPRPAPKG 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L +APTREL Q+ E V GGVS + L+ G I+V PG Sbjct: 76 GARVLVLAPTRELVSQIADGFESFGRHQPPSVTTIFGGVSQVHQVNALKAGVDIIVAAPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D I ++S L+A+VLDEAD+MLD+GF IE I+ + PK R ++FSAT+ +I Sbjct: 136 RLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDRHTVLFSATMPKSI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLA++ +D +V IA + I+ + V +D+ A++ +LR G A+VF Sbjct: 196 ATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLAMLRTPGIGQAVVFTLQ 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + E AL G SQ +R AL R G A+V +ATD+AARGID+ + Sbjct: 256 KNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTAQVLVATDIAARGIDVDTV 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V + +L S PE+ +HR GRTGRAGR G ++ Sbjct: 316 THVFNHDLPSLPESYVHRIGRTGRAGRNGFAI 347 >gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1 [Ailuropoda melanoleuca] Length = 455 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|27379459|ref|NP_770988.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110] gi|27352611|dbj|BAC49613.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110] Length = 500 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 182/338 (53%), Gaps = 6/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +QE + L KDVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAATGYTTPTPIQEQAIPHVLARKDVLGIAQTGTGKTAAFVLPMLTILEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + A + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLTRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +V+DEAD MLD+GF DIE I P R+ L F+AT+ P I Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---KNAIVF 250 + + + + +V ++ + V + + A KNAI+F Sbjct: 192 RRITETFLHNPQKVEVSKPATTAVTVTQSQVPAGKKAHEKRELLRRLLREAKDLKNAIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ K L +H F V AL G++ Q R AL+ R G + +A+DVAARG+D+ Sbjct: 252 CNRKREVAIVHKSLQKHGFSVGALHGDMDQPARMAALEQFRKGELPLLVASDVAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P++ V + ++ +P++ +HR GRTGRAGR G ++ ++ Sbjct: 312 PEVSHVFNFDVPHHPDDYVHRVGRTGRAGRSGTAISIV 349 >gi|53719796|ref|YP_108782.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei K96243] gi|53724110|ref|YP_103224.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344] gi|67639288|ref|ZP_00438162.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4] gi|121599488|ref|YP_993402.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1] gi|124385746|ref|YP_001029162.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] gi|126448376|ref|YP_001080910.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247] gi|166999673|ref|ZP_02265508.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20] gi|167903298|ref|ZP_02490503.1| ATP-dependent RNA helicase [Burkholderia pseudomallei NCTC 13177] gi|217421948|ref|ZP_03453452.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576] gi|254177947|ref|ZP_04884602.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399] gi|254200174|ref|ZP_04906540.1| DEAD/DEAH box helicase [Burkholderia mallei FMH] gi|254206512|ref|ZP_04912864.1| DEAD/DEAH box helicase [Burkholderia mallei JHU] gi|254257950|ref|ZP_04949004.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a] gi|254297179|ref|ZP_04964632.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e] gi|254358076|ref|ZP_04974349.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280] gi|52210210|emb|CAH36189.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei K96243] gi|52427533|gb|AAU48126.1| ATP-dependent RNA helicase RhlE, putative [Burkholderia mallei ATCC 23344] gi|121228298|gb|ABM50816.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1] gi|124293766|gb|ABN03035.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] gi|126241246|gb|ABO04339.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247] gi|147749770|gb|EDK56844.1| DEAD/DEAH box helicase [Burkholderia mallei FMH] gi|147753955|gb|EDK61020.1| DEAD/DEAH box helicase [Burkholderia mallei JHU] gi|148027203|gb|EDK85224.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280] gi|157807478|gb|EDO84648.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e] gi|160698986|gb|EDP88956.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399] gi|217395690|gb|EEC35708.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576] gi|238519823|gb|EEP83289.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4] gi|243064323|gb|EES46509.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20] gi|254216639|gb|EET06023.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a] Length = 516 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 52 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 110 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 111 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 170 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 171 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 224 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 225 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 284 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 285 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 344 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 345 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 404 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 405 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 442 >gi|134277372|ref|ZP_01764087.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305] gi|226198998|ref|ZP_03794561.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9] gi|134251022|gb|EBA51101.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305] gi|225929098|gb|EEH25122.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9] Length = 513 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 49 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 107 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 108 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 167 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 168 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 282 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 341 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 342 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 401 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 402 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 439 >gi|126453899|ref|YP_001066782.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a] gi|237812839|ref|YP_002897290.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346] gi|242315830|ref|ZP_04814846.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b] gi|254179293|ref|ZP_04885892.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655] gi|254189321|ref|ZP_04895832.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237] gi|254198045|ref|ZP_04904467.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13] gi|126227541|gb|ABN91081.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a] gi|157937000|gb|EDO92670.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237] gi|169654786|gb|EDS87479.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13] gi|184209833|gb|EDU06876.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655] gi|237504437|gb|ACQ96755.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346] gi|242139069|gb|EES25471.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b] Length = 513 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 49 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 107 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 108 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 167 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 168 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 282 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 341 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 342 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 401 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 402 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 439 >gi|310816695|ref|YP_003964659.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium vulgare Y25] gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium vulgare Y25] Length = 517 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 190/358 (53%), Gaps = 30/358 (8%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A++E GY T +Q + L +DVL AQTG+GKT +F L + L Sbjct: 11 PKVL-QAVAEAGYTTPTPIQAGAIPEALAGRDVLGIAQTGTGKTASFTLPMIQLLSRGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + T + A+ IGGVS + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDMYAKYTKLTKALLIGGVSFKDQDTLIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDI-----------------DYRAVLVALSD 230 T++P I + + R+ +A + +I + RAVL AL + Sbjct: 187 TMAPEIERITNTFLSAPARIEVARAATTNQNITQAVVQFKGSSKEREPSEKRAVLRALIE 246 Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 ++A + NAI+FC+ + V K L ++ + + G+L Q +R L Sbjct: 247 AESATLT--------NAIIFCNRKIDVDIVAKSLKKYGYNAEPIHGDLDQSQRMRTLDGF 298 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RDG + +A+DVAARG+D+P + V + ++ S+ E+ +HR GRTGRAGR G S F+I Sbjct: 299 RDGSVKFLVASDVAARGLDIPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRTG-STFMI 355 >gi|228994170|ref|ZP_04154070.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442] gi|228765622|gb|EEM14276.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442] Length = 481 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 194/370 (52%), Gaps = 16/370 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ Y T VQ ++ L +KD++V +QTGSGKT +FG+ L + E ++ Sbjct: 18 ALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV ++ + + G R++ +L+ HIVVGTPG Sbjct: 73 -PQALILTPTRELAAQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQKTHIVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DHI ++ LK +V+DEADEML++GF D +E I+D P R ++FSAT+ + Sbjct: 132 RVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSATLPEDV 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+ Y K + I + I++ + V ++ + + +I + I+FC T Sbjct: 192 ENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIFCRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +V + L + + G + Q++R + + G+ R +ATDVAARGID+ ++ Sbjct: 252 QENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENI 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE-- 370 VI+ ++ E+ +HR+GRTGRAG G ++ FV P ER E + +E Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYE-----ERFLVEIEEYIGFEIQ 366 Query: 371 --PAPSVEAI 378 APS E + Sbjct: 367 KIEAPSKEEL 376 >gi|126439983|ref|YP_001059500.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668] gi|126219476|gb|ABN82982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668] Length = 514 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 51 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 109 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 110 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 169 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 170 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 223 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 224 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 283 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 284 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 343 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 344 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 403 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 404 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 441 >gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing protein, putative [Candida dubliniensis CD36] gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36] Length = 499 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 198/346 (57%), Gaps = 10/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ E++ + T +Q + L KD++ AQTGSGKT AF + + +L Sbjct: 94 VPDLL-ESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQ 152 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL +APTRELA Q+ + L + G+ + +GG+ + + RDL H Sbjct: 153 QPY------FALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH 206 Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGR+ DH+ KG ++ +LK +V+DEAD +LD+ F ++ IL P KR +F Sbjct: 207 IIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRITYLF 266 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ I L + + V+V+++S+ + ++ +LV ++ ++++L K Sbjct: 267 SATMTNKIEKLQRASLHNPVKVSVSSKYQTADNLIQSMMLVNDGYKNTILIHLLNEFIGK 326 Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T A R T +LA L F V L G+LSQ +R +L + +A + +ATDVA Sbjct: 327 SIIVFTRTVAHAQR-TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVA 385 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++VI+ ++ ++ + +HR GRT RAGR G S+ +I Q Sbjct: 386 ARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 431 >gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1] gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1] Length = 525 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 187/342 (54%), Gaps = 9/342 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q+ + L+ D+L AQTG+GKT AFG+ L ++ + Sbjct: 31 QTLESMGFKEPTPIQKDSIPYALKGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 83 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L +APTRELA+QV +L V V GG+ + R+ + L+ G IVVGTP Sbjct: 84 EGVQSLILAPTRELAMQVAEQLREFSKGQRVQVVTVFGGMPIDRQIKALKRGPQIVVGTP 143 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GR+ DH+ + L + ++LDEADEM+++GF DD+ FI+D P +R+ ++FSAT+ Sbjct: 144 GRVIDHLNRRTLKTHDIHTLILDEADEMMNMGFIDDMRFIMDKIPADQRQTMLFSATMPK 203 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 AI L + + K + + I+ +V ++ + N L H + AIVF Sbjct: 204 AIQELVQQFMKTPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 263 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T L ++ L G+++Q +R L+ ++ + + +ATDVAARG+D+ Sbjct: 264 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 323 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + V + ++ + E+ HR GRTGRAG++G++V FV P M Sbjct: 324 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 365 >gi|170725457|ref|YP_001759483.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810804|gb|ACA85388.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 432 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 195/354 (55%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+SE GY +T VQ+ + R +DVL SAQTG+GKT AF L + ++ Sbjct: 6 FSFAPEIL-RAISECGYQKMTPVQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMI 64 Query: 64 ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 +E R S AL + PTRELA Q+ + V V GGV + + + Sbjct: 65 DKPSETQR----SNTRALILTPTRELASQIADNINDYSKHMQVSVLTIYGGVKLETQAQK 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 ++ G I+V TPGRL +HI+ LN+S++ +VLDEAD MLD+GF DI+ +L + K Sbjct: 121 IKRGVDIIVATPGRLLEHIQACNLNLSNVDFMVLDEADRMLDMGFVSDIQKVLQAVNKNS 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT S ++ LA ++ +++ +N + V + + ++ Sbjct: 181 QKMLFSATFSSSVKKLANDFLDKPKLISVDKQNTTADTVSQVVYPVEQRRKRELVSELIG 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 K ++F +TR + + K L + GE +Q R AL+ ++G+ RV +A Sbjct: 241 KKNWKQVLIFTATRDAADKLVKELNLDGIPSSVVHGEKAQGNRRRALREFKEGKVRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+ DLE V++ +L E+ +HR GRTGRAG+ G+++ ++ + +R Sbjct: 301 TEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 354 >gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus] gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus] Length = 453 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 112/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + LL Sbjct: 32 VTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAP 91 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 92 QRL------FALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH 145 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 146 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 205 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D+ +V IL Sbjct: 206 SATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGN 265 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 266 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVAS 325 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+ + Q Sbjct: 326 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 370 >gi|77918349|ref|YP_356164.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380] gi|77544432|gb|ABA87994.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380] Length = 433 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 117/348 (33%), Positives = 196/348 (56%), Gaps = 5/348 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+P + + G+ LT VQE + L +KDV AQTG+GKT AF ++L Sbjct: 1 MKFTELNLPAEVQRGIDAMGFTALTPVQEQSIPLALDKKDVAAQAQTGTGKTAAFLISLF 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + L+ +D+ + AP AL +APTREL VQ+ ++ L G + GGV ++R+ Sbjct: 61 ARLM--SDKKTETRAPRALILAPTRELVVQISKDAMGLGQFCGFKIQPIFGGVDYEKQRQ 118 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-- 177 L G I++ TPGRL D+++ +++ ++A+V+DEAD M D+GF D+ +IL P Sbjct: 119 ALHAGVDILIATPGRLIDYVKQGAVSLGSIEALVIDEADRMFDMGFIRDLRYILRKLPAF 178 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 +R+ ++FSAT+S + LA + A ++ +A EN I+ V+ ++ ++ Sbjct: 179 DRRQTMLFSATLSHRVMELAYEFMDLAEKIKVAPENVTAEQIEEVLYHVSRREKFALLLG 238 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L+ AK ++F +T+ T L + F+ +SG++ Q++R L ++GR Sbjct: 239 LLKKEPAKCVMLFVNTKREAEHLTGRLQVNGFKAALISGDIPQKKRMRILDEFKEGRIHF 298 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + TDVA+RGI + + VI+ +L + E+ +HR GRT RAG G ++ Sbjct: 299 LVGTDVASRGIHVDGVTHVINYDLPQDREDYVHRIGRTARAGAAGKAI 346 >gi|320530074|ref|ZP_08031144.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399] gi|320137507|gb|EFW29419.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399] Length = 423 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 209/382 (54%), Gaps = 16/382 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L RG T VQE + P +R +DV+ AQTG+GKT+AF LL ++ P Sbjct: 17 LKNRGISVPTPVQERAV-PAMRAGRDVIAQAQTGTGKTLAF-------LLPVLEKIKPQG 68 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + AL IAPTRELA+Q+ R E L A + + GG + R++ L+ +V+GTP Sbjct: 69 AVVQALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLRRHPQLVIGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R L + + VVLDEADEML LGF +D+E +L + + ++ +FSAT+ Sbjct: 129 GRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDYQLALFSATMPER 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L K + + R+ I E+ +I+ A+ V ++ + + + A+VFC+ Sbjct: 189 IVQLTKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCASINEEAPYLAMVFCA 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ LA + V ALSG L+Q +R+ L+ R + ++ ATD+AARG+D+ Sbjct: 249 TKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQILCATDIAARGLDIEG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFRE--ANVSV 367 + V + +L + +HR GRTGRAG +G ++ ++ R+ E +E A +V Sbjct: 309 VTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLRKIESALKERLARAAV 368 Query: 368 VWEPAPSVE-AIRERDAQRILQ 388 +P P+ + A +++ +R++Q Sbjct: 369 KKKPRPAPQKAQPDKEGRRVVQ 390 >gi|258542730|ref|YP_003188163.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01] gi|256633808|dbj|BAH99783.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01] gi|256636867|dbj|BAI02836.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03] gi|256639920|dbj|BAI05882.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07] gi|256642976|dbj|BAI08931.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22] gi|256646031|dbj|BAI11979.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26] gi|256649084|dbj|BAI15025.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32] gi|256652071|dbj|BAI18005.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655128|dbj|BAI21055.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12] Length = 636 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 184/329 (55%), Gaps = 3/329 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S+ GY + T +QE + L +DV+ AQTG+GKT +F L + L +D + A Sbjct: 169 AISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPMLEIL---SDSRARAR 225 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P +L + PTRELA+QV + A+ IGG S+ ++ L G +++ TPG Sbjct: 226 MPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRGVDVLIATPG 285 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D GL ++H +V+DEAD MLD+GF DIE I+ P R+ L+FSAT++P I Sbjct: 286 RLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLLFSATMAPTI 345 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + + +A ++ + I V+V + + +L+ +NAIVFC+ Sbjct: 346 RKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLKDPALQNAIVFCNR 405 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V TK L +H F AL G+L Q R + L+ ++ +V + +DVAARGID+ L Sbjct: 406 KRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCSDVAARGIDIGGL 465 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG 342 V + +L + E+ +HR GRTGRAGR+G Sbjct: 466 SHVFNFDLPFHAEDYVHRIGRTGRAGREG 494 >gi|24216134|ref|NP_713615.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str. 56601] gi|45656634|ref|YP_000720.1| ATP-dependent RNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24197378|gb|AAN50633.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str. 56601] gi|45599869|gb|AAS69357.1| ATP-dependent RNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 540 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 116/334 (34%), Positives = 187/334 (55%), Gaps = 7/334 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E GY LT +QE + L KD+ AQTG+GKTVAF + + +L + Sbjct: 15 AIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIHNILTKG-----IQ 69 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL +APTREL +Q+ E + L + G+ IGG + +DL+ I+V TP Sbjct: 70 GIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQNKDLEGLNGIIVATP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I+ ++IS+++ VLDEAD MLD+GF DI ++L +++ L++SAT+S Sbjct: 130 GRLIDMIKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRKQTLLYSATLSVE 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251 + LA + + V + I E ID + V + ++ + N I+ I+F Sbjct: 190 VMRLAYRFLNEPVEIQINPEKIITERIDQKIVHLGREEKIPYMTNLIINSKEEGQGIIFT 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + +A++ + L ++ V +S EL Q++R L+ + G+ R +ATDVA+RGID+ Sbjct: 250 NYKANIPKIVYTLRKYGVPVTGISSELDQKKRLRLLRDFKSGKYRYMVATDVASRGIDVE 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++++V + +L + EN +HR GRT RAGRKG ++ Sbjct: 310 NIDIVYNYDLPQDTENYVHRIGRTARAGRKGKAI 343 >gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 492 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 192/365 (52%), Gaps = 17/365 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++ +GY + +Q + L KDV+ +AQTG+GKT F L L LL++ + + Sbjct: 12 ILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLSKGTK-A 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PA AL + PTRELA Q+G +E + AV GGV + + L G I+V Sbjct: 70 PAKQVRALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKLNRGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ S L+ +VLDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 130 TPGRLLDLYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V + ++ +++ + + +VF Sbjct: 190 DDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPVDHGQKVAVLIELIKQNDWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 250 SRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRR 355 L V++ +L + PE+ +HR GRTGRAG G +V +I QN++RR Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLRDIELLIKQNLERR 369 Query: 356 AERLF 360 F Sbjct: 370 PVEGF 374 >gi|169633001|ref|YP_001706737.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii SDF] gi|169151793|emb|CAP00614.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii] Length = 383 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 198/346 (57%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + RF P AL +APTRELA+Q+ + + L + + + +GGV ++++ L Sbjct: 69 PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 126 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +VA D+ + +IL Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L + ++V LSGE++Q +R L+ + G+ + I Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + V++ L ++ +HR GRTGRAG +G+S+ Sbjct: 307 ATDVAGRGIHVEGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSI 352 >gi|119475746|ref|ZP_01616099.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143] gi|119451949|gb|EAW33182.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143] Length = 451 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 192/341 (56%), Gaps = 6/341 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + G+ T VQ + L+ +D++VSAQTGSGKT AF L + +L E Sbjct: 15 KALDKLGFSEATEVQAQAIPEALKRRDLMVSAQTGSGKTAAFLLPILHQILTEE---VST 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L + PTRELA+Q + E L A T + + IGG + + L+ +++ TP Sbjct: 72 SGTRVLILLPTRELALQTQKNFEMLAAFTYIKSGLIIGGEAFKHQVATLRKDPEVLIATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191 GRL DHI + L+ +VLDEAD MLD+GF D+ I S +R+ L+FSA++ Sbjct: 132 GRLVDHIEKGTPDFRQLEVLVLDEADRMLDMGFAIDMNTIASSCNPERQNLLFSASLKHE 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250 + ++K++ +D V + + S + QH DI + VL + ++ + ++ A+ +VF Sbjct: 192 GLGKISKSF-RDPVAIAVGSPDHQHQDICQQLVLADTIKHKEKLVEALIDEEQAQKTLVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+TR + + +L +V + G++SQ +R + R G V +ATDVAARG+D+ Sbjct: 251 CNTRVQCQQLSHLLRYKKMKVGYIHGDISQNDRKQVMNQFRQGGIAVLVATDVAARGLDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ++LV++ ++ + ++ LHR GRTGRAG +G ++ +I N Sbjct: 311 KGVDLVVNFNIAQSGDDHLHRVGRTGRAGEQGKAITLIDSN 351 >gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Meleagris gallopavo] Length = 447 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + LL Sbjct: 26 VTDVLCEACDQLGWKIPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAP 85 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 86 QRL------FALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH 139 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 140 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D+ +V IL Sbjct: 200 SATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGN 259 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VFCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 260 SFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVAS 319 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+ + Q Sbjct: 320 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 364 >gi|322507406|gb|ADX02860.1| rhlB [Acinetobacter baumannii 1656-2] gi|323518696|gb|ADX93077.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii TCDC-AB0715] Length = 389 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 198/346 (57%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 15 NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 74 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + RF P AL +APTRELA+Q+ + + L + + + +GGV ++++ L Sbjct: 75 PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 132 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 133 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 192 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +VA D+ + +IL Sbjct: 193 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 252 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L + ++V LSGE++Q +R L+ + G+ + I Sbjct: 253 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 312 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + V++ L ++ +HR GRTGRAG +G+S+ Sbjct: 313 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSI 358 >gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis] gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis] Length = 515 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 110/356 (30%), Positives = 201/356 (56%), Gaps = 10/356 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + +A E + + +Q+ + L+ KD++ A+TGSGKT AF L + LL R Sbjct: 68 ETLCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILHALLENPQR 127 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + AL + PTRELA Q+G + E L + G+ V +GG+ + + L HI+ Sbjct: 128 Y------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHII 181 Query: 129 VGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 + TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +FSA Sbjct: 182 IATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSA 241 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T++ + L + KD V+V ++++ + + + + + +D +V+IL + Sbjct: 242 TMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGNSF 301 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++FCST + + +L + L G++SQ +R AL + + I+TDVA+RG Sbjct: 302 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 361 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 +D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E+L Sbjct: 362 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQLL 417 >gi|322504299|emb|CAM41648.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 602 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 183/338 (54%), Gaps = 4/338 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P I +A + G+ T +Q L +D++ A+TGSGKT+AF + A ++A+ Sbjct: 153 PDAIHQAFMDAGFQRPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAALHIMAQPP 212 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 P P+AL +APTRELAVQ+ E + ++ C+ GG ++R L+ G H Sbjct: 213 -LQPGDGPIALVLAPTRELAVQIETETRKSLTRVPSIMTTCVYGGTPKGPQQRSLRAGVH 271 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 + + TPGRL D + N+ + + LDEAD MLD+GF D I I R+ LMFS Sbjct: 272 VCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTDRQTLMFS 331 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I LA ++QKD VRV+I SE ++D+ +V ++ + ILR G + Sbjct: 332 ATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKLEEILRQVGPQ 391 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ S L L Q V+A+ G+ Q R L R + +ATDVA Sbjct: 392 RVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERAILVATDVA 451 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 ARG+D+ +L++V++ ++ N E+ +HR GRTGRAG+ G Sbjct: 452 ARGLDIKNLDVVVNYDMPLNIEDYVHRIGRTGRAGKTG 489 >gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1] gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea MMB-1] Length = 619 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 134/418 (32%), Positives = 217/418 (51%), Gaps = 17/418 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+++ GY +++Q + L D+L AQTG+GKT AF L L S + N Sbjct: 19 ILKAVADLGYEQPSAIQAQSIPYLLEGHDLLGQAQTGTGKTAAFALPLLSRIDVTN---- 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIV 128 + L +APTRELA+QV + YA+ V GG+S + R L+ G +V Sbjct: 75 --KSTQLLVLAPTRELAIQVSEAFQS-YARNIPDFHVLPIYGGMSYDTQLRQLRRGVQVV 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DHIR K L + L+A+VLDEADEML +GF DD+E+IL+ +P + +FSAT Sbjct: 132 VGTPGRVMDHIRRKTLKLDGLQALVLDEADEMLRMGFIDDVEWILEHTPDGHQTALFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P I +A + + V I ++ + I + V+ + +A+ IL + I Sbjct: 192 MPPVIRKVANKHLNNPKEVKILTKTSTATTISQKYWQVSGIHKLDALTRILEMNEHDGMI 251 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+A+ + L AL+G++SQ R + ++ G+ + +ATDV ARG+ Sbjct: 252 IFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVATDVVARGL 311 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + V++ ++ + E+ +HR GRTGRAGR G ++ + +R +++ R ++ Sbjct: 312 DVDRVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVGHRERRMLQQIERATRQAIE 371 Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DPEKIAAGF 420 P+ I E+ R Q D+I ++ L A + DP K+ A Sbjct: 372 RMQLPTASDINEQRVARFKQR--ITDTIDNEDLDFFIELAASYQKENDVDPVKLGAAL 427 >gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505] gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505] Length = 865 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 203/358 (56%), Gaps = 10/358 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +A+++ G+V T++Q+ + L +DV+ AQTG+GKT AFGL L + + Sbjct: 168 GLPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSR 227 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 ++ AL +APTRELA+Q + + A++ G+ V GG + L+ G Sbjct: 228 DNVVQ------ALVLAPTRELALQSAEAITDMAARSRGLEVVAVYGGAPYGPQIGALKGG 281 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ D I L + ++ VLDEADEML +GF +D+E I +S P RR + Sbjct: 282 AQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPADRRTAL 341 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ PAI +A+ + + V+V ++ + + +V + A+ +L A Sbjct: 342 FSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDA 401 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF T+++ LA Q A+SG++ Q+ER ++ +R G V +ATDVA Sbjct: 402 EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVA 461 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359 ARG+D+ + LV++ ++ E +HR GRTGRAGR G +V F+ P+ R+ ERL Sbjct: 462 ARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERL 519 >gi|76809038|ref|YP_334004.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b] gi|76578491|gb|ABA47966.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b] Length = 529 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 65 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 123 Query: 65 -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 R P + P L + PTRELA+QV G+ L L Sbjct: 124 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 183 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 184 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 237 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDI+ I+ ++P R+ ++FSAT+ I +L KD R+ I + S+I Sbjct: 238 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 297 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ FQ AL G+L Sbjct: 298 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 357 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 358 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 417 Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 418 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 455 >gi|89093208|ref|ZP_01166158.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92] gi|89082504|gb|EAR61726.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92] Length = 497 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 123/361 (34%), Positives = 200/361 (55%), Gaps = 19/361 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62 N+P + A+S+ + T +Q + L KD++ AQTG+GKT AF L + + L Sbjct: 60 NLPDDVLHAISDLKFEYCTGIQAETIPAALAGKDIIGKAQTGTGKTAAFLLGIITDLIDY 119 Query: 63 -LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E R P AL +APTRELA+Q+ + + L T + V +GG+ ++R+ L Sbjct: 120 PLEEKPRLG---EPRALVVAPTRELALQIAEDAKGLAKYTDLHVVSLVGGMDYEKQRQKL 176 Query: 122 QNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179 + I+V TPGRL D + K +++ +++ +VLDEAD ML +GF D+ I+ ++P+K Sbjct: 177 KKKPVDILVATPGRLIDFVNRKDVDLWNVEVLVLDEADRMLSMGFIPDVRTIVRNTPRKG 236 Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ L++SAT + I LA+ + DAV++ IA E + ++ LV+ ++ + N Sbjct: 237 ADRQTLLYSATFTDDILNLAEQWTLDAVKIEIAPEIKTTDNVTQTVYLVSGEEKYRLLRN 296 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + A+ IVF + R R L + + +SGE+ QQ+R L+ R G+ +V Sbjct: 297 YMDKDHAEKVIVFGNRRDETRRLADRLCKDGIRAALMSGEIPQQKRVRTLEDFRSGKIQV 356 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIP 349 +ATDVA RGI + + V + +L +P++ +HR GRTGRAG G S+ F+IP Sbjct: 357 LVATDVAGRGIHIDGVTHVFNYQLPEDPDDYVHRIGRTGRAGATGASICFACEDDSFLIP 416 Query: 350 Q 350 + Sbjct: 417 E 417 >gi|331269837|ref|YP_004396329.1| DEAD/DEAH box helicase domain-containing protein [Clostridium botulinum BKT015925] gi|329126387|gb|AEB76332.1| DEAD/DEAH box helicase domain protein [Clostridium botulinum BKT015925] Length = 370 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 121/364 (33%), Positives = 194/364 (53%), Gaps = 12/364 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I + L +G T +QE + E DV+ AQTG+GKT AF LL Sbjct: 8 ISEDIIKVLKSQGVTTPTPIQEKSIKLVKEENDVIAEAQTGTGKTFAF-------LLPMF 60 Query: 67 DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + SP + L + PTRELA+Q+ E L + + GG + + + L+ Sbjct: 61 ENMSPNINTVQGLIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLKGNI 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+V+ TPGRL DHI+ +N+ LK +VLDEAD+ML +GF++++E I+ + KK+++L F Sbjct: 121 HLVIATPGRLLDHIKRNTINLQKLKTIVLDEADQMLYMGFKNEVEEIMKHTSKKKQILCF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHG 243 SAT++ + LA Y K+ V+I SE +I + +V +DR +A+ +L Sbjct: 181 SATMNSQVKKLAYRYMKEPKIVSIQSEEVTLKNI--KQAVVETTDRRKQDALCKVLDEDN 238 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+FC T+ V L E + + G+L+Q +R ++ + + IATDV Sbjct: 239 PFMAIIFCRTKRRVDNLEDALHERGYNCKKIHGDLNQAKRERVMKEFKKMDIQYLIATDV 298 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ + V ++ N E+ +HR GRTGRAG +G + I +R + + +E Sbjct: 299 AARGLDISGVTHVYSYDIPENAESYIHRIGRTGRAGEEGETCLFIDPKDKRTLDIIEKEI 358 Query: 364 NVSV 367 V++ Sbjct: 359 KVTI 362 >gi|169795350|ref|YP_001713143.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AYE] gi|184158781|ref|YP_001847120.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ACICU] gi|215482884|ref|YP_002325087.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii AB307-0294] gi|239502877|ref|ZP_04662187.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB900] gi|260554464|ref|ZP_05826685.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC 19606] gi|332850462|ref|ZP_08432782.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150] gi|332871914|ref|ZP_08440326.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113] gi|332875150|ref|ZP_08442983.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059] gi|169148277|emb|CAM86142.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii AYE] gi|183210375|gb|ACC57773.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU] gi|193077811|gb|ABO12683.2| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii ATCC 17978] gi|213986779|gb|ACJ57078.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii AB307-0294] gi|260411006|gb|EEX04303.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC 19606] gi|332730733|gb|EGJ62044.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150] gi|332731128|gb|EGJ62429.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113] gi|332736594|gb|EGJ67588.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059] Length = 383 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 198/346 (57%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + RF P AL +APTRELA+Q+ + + L + + + +GGV ++++ L Sbjct: 69 PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 126 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +VA D+ + +IL Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L + ++V LSGE++Q +R L+ + G+ + I Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + V++ L ++ +HR GRTGRAG +G+S+ Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSI 352 >gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719] gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719] Length = 449 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 16/363 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL G+ T +Q + P L+ +D+L +AQTG+GKT F L L L E + + A Sbjct: 14 KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 ++ AL + PTRELA QV + + AV GGVS++ + L+ G I+V TP Sbjct: 73 NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D R + + L+A+VLDEAD MLDLGF +++ + + P+KR+ L+FSAT S A Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I TLA+ +D + + ++ N + V V + ++L+ + + A+VF Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKVELFCHLLQANRWRQALVFAK 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR SV +L ++ G+ Q R ALQ + G + +ATDVAARG+D+ + Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLMVATDVAARGLDIEE 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357 + LV++ +L E+ +HR GRTGRAG G +V +I Q +QRR E Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372 Query: 358 RLF 360 F Sbjct: 373 PDF 375 >gi|320330891|gb|EFW86865.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. glycinea str. race 4] Length = 625 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|114564377|ref|YP_751891.1| ATP-dependent RNA helicase DbpA [Shewanella frigidimarina NCIMB 400] gi|114335670|gb|ABI73052.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 467 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 126/378 (33%), Positives = 204/378 (53%), Gaps = 14/378 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ E L G+ ++T +Q L P L +DV+ A TGSGKT AFGL L + L + Sbjct: 20 PELL-ENLQTMGFESMTQIQAESLPPILAGEDVIGQAMTGSGKTAAFGLGLLNKLDVKRF 78 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R + + PTRELA QV +++ L V V GGV + + L++GAH Sbjct: 79 RIQ------TMVLCPTRELADQVAKDIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 132 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGR+ DH+ L++S++ ++LDEAD ML++GF+ I+ I+ ++P++R+ L+FS Sbjct: 133 IIVGTPGRIVDHLDRNRLDLSNMNMLILDEADRMLEMGFQQHIDQIIAAAPRERQTLLFS 192 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK- 245 AT I +A V V + + +H ++ + D + + K Sbjct: 193 ATFPDQIQAIADQILYKPVMVKVEA---KHDNLTIDQHFYRIEDNQGRLEALRLLLLDKQ 249 Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +A+VFC+T+ + L E F V+AL G+L Q++R L + AR+ +ATDV Sbjct: 250 PESAVVFCNTKRETQQVADSLHEFGFSVLALHGDLEQRDRDQMLLQFANRSARILVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+ +L+ V + ++ + E +HR GRTGRAG G + + + + Sbjct: 310 AARGLDIDELDAVFNYHIAYDTEVHIHRIGRTGRAGSSGAAYTFFGEEDGYKMAMIEEAM 369 Query: 364 NVSVVWEPAPSVEAIRER 381 N VV EP P + A+ ++ Sbjct: 370 NKDVVSEPLPPMSALNKQ 387 >gi|330465173|ref|YP_004402916.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora maris AB-18-032] gi|328808144|gb|AEB42316.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora maris AB-18-032] Length = 572 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 192/356 (53%), Gaps = 9/356 (2%) Query: 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE +P+ + AL+ +G +Q A + L +DVL QTGSGKT+AFGL L + Sbjct: 35 TFEALGLPEPLARALARQGITTPFEIQRATVPDALAGRDVLGRGQTGSGKTLAFGLPLLA 94 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + A+ DR P S P AL + PTRELA+QV L L GV + +GGV R+ Sbjct: 95 RI-ADGDRARP-SRPRALILVPTRELAMQVNDALAPLGRTIGVFLKTAVGGVPYDRQIDA 152 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G ++V TPGRL D I + ++ VLDEAD+M D+GF ++ +L +P Sbjct: 153 LRRGVEVMVATPGRLADLIERGICKLDDVEITVLDEADQMADMGFLPEVTDLLAKTPAHA 212 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ + L + + D V + A S +D+ +L+ SD+ +I Sbjct: 213 QRLLFSATLDADVDALVQRFMTDPVTHSTAPATAAVSTMDHHLLLIPPSDKFPVTASIAA 272 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G IVF T+ V R LA + L G +Q+ R+ L R+GR V +A Sbjct: 273 RAG--RTIVFARTQLGVDRLVSQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRTNVLVA 330 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRR 355 TDVAARGI + + LV+H + +P++ LHR+GRT RAG G ++ V+P+ QRR Sbjct: 331 TDVAARGIHVDGVTLVLHVDPPKDPKDYLHRAGRTARAGETGAVATLVLPK--QRR 384 >gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Stappia aggregata IAM 12614] gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Stappia aggregata IAM 12614] Length = 505 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 184/340 (54%), Gaps = 10/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T++Q + L +D+L AQTG+GKT +F L + + L R A Sbjct: 39 AVEAAGYKEPTAIQSGAIPQVLERRDILGIAQTGTGKTASFTLPMLTLLEKGRAR---AR 95 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + +A+ IGGVS + + L G +++ TPG Sbjct: 96 MPRTLILEPTRELAAQVEENFSRYGTNHKLNIALLIGGVSFSEQDKKLDRGTDVLIATPG 155 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L + ++ +V+DEAD MLD+GF DIE I P R+ L FSAT+ P I Sbjct: 156 RLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEI 215 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA---KNAI 248 L + + ++ R+ +A + ++ L A +D LR GA +NAI Sbjct: 216 QRLTETFLQNPARIEVAPTSSTAENVAQ--FLKATDSKDYEKRAALRDLLEGAEDLQNAI 273 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+ + V+ + L H + V AL G++ Q+ R L R G ++ +A+DVAARG+ Sbjct: 274 VFCNRKRDVTTVYRSLERHEYNVGALHGDMDQRTRMMMLDNFRKGTIKLLVASDVAARGL 333 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+P++ V + ++ SN E+ +HR GRTGRAGRKG + ++ Sbjct: 334 DIPEVSHVFNFDVPSNAEDYVHRIGRTGRAGRKGTAFTLV 373 >gi|289625029|ref|ZP_06457983.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 516 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|323693539|ref|ZP_08107743.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum WAL-14673] gi|323502394|gb|EGB18252.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum WAL-14673] Length = 422 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 126/343 (36%), Positives = 186/343 (54%), Gaps = 16/343 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E+L GY T +Q+ ++ L K+V+ A TGSGKT AF + + ++ E + Sbjct: 18 ILESLRLLGYERPTEIQQQVIPAMLEGKNVVGRAPTGSGKTAAFAIPICDKIIWEEN--- 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTREL VQV E+ + K + V GG + ++ R L+ +HIV G Sbjct: 75 ---LPQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQKSHIVTG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHIR L + + +V+DEAD MLD+GF D+++ ILD + R+ +FSAT+ Sbjct: 132 TPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIALFSATLK 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-----AIVNILRYHGAK 245 P I A ++ D V I +E + ++ A+ L + DN +N+L + Sbjct: 192 PEIREFAGSHIHDMVM--IFTEQPEAAE---NAITEELFETDNENKFKVFLNVLYRENPQ 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+FC TR V+ + L H + GEL Q+ER + R G R IATDVAA Sbjct: 247 CCIIFCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGIDL ++ VI+ + + E +HR GRTGR GR G +V ++ Sbjct: 307 RGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGKAVSLV 349 >gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 477 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 211/372 (56%), Gaps = 16/372 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP+++ EA+ + T +Q + L KDV+ A TGSGKT AF + + +L + Sbjct: 73 IPELL-EAIQSMKFTKPTPIQAEAIPHALEGKDVIGLAVTGSGKTAAFAIPILQSLWHDQ 131 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + L ++PTRELA Q+ + L + G+ +GG+ + + RDL H Sbjct: 132 LPY------YCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMRKPH 185 Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGR+ DH+ KG ++ +LK +V+DEAD +LDL F +++ IL P++R +F Sbjct: 186 VIVATPGRIVDHLEHTKGFSLKNLKYLVMDEADRLLDLDFGPELDKILRVIPRERNTYLF 245 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ I L + + VR+ ++S+ + ++ +LV+ ++ +V++L K Sbjct: 246 SATMTNKIEKLQRASLNNPVRIAVSSKYQTADNLVQSMMLVSDGYKNTYLVHLLNEFVGK 305 Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F T A R T +LA L F V L G+LSQ +R +L + G+A + +ATDVA Sbjct: 306 SIIIFTRTCAHSQR-TALLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKANILVATDVA 364 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR 361 ARG+D+P +++VI+ ++ ++ + +HR GRT RAGR G S+ ++ Q M R E + + Sbjct: 365 ARGLDIPAVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLVTQYDLEMYLRIEAVLQ 424 Query: 362 EANVSVVWEPAP 373 + + +PAP Sbjct: 425 K---KLPKDPAP 433 >gi|256083681|ref|XP_002578069.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni] gi|238663419|emb|CAZ34307.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni] Length = 944 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 131/374 (35%), Positives = 203/374 (54%), Gaps = 15/374 (4%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66 Q+I E ++ Y++ T VQ+ L ++D++ AQTGSGKT AF L + + L +N Sbjct: 168 QIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFLLPILNMLFEDNHC 227 Query: 67 -----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 S A PLAL +APTREL+ Q+ E ++ + V GG S+ + R+L Sbjct: 228 ENSDASALSCAVCPLALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGGASILAQIREL 287 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK- 178 +G +++V TPGRL D + +++ ++ VLDEAD MLD+GF I I++ P Sbjct: 288 SHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRRIVEQHGMPPA 347 Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 KR+ LMFSAT I TLA+++ + + + + +I + VA D+ + +V Sbjct: 348 GKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVR 407 Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +L+ A+VF T+ K L + F V ++ G+ Q ER +ALQ R GR Sbjct: 408 LLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHALQSFRSGRTP 467 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQ 353 + IAT VAARG+D+P+++ VI+ +L S+ E +HR GRTGR G+ G + QN+ Sbjct: 468 ILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPGSATSFFSEKNQNVV 527 Query: 354 RRAERLFREANVSV 367 R L RE+ +V Sbjct: 528 RDLVELLRESKQAV 541 >gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp. MWYL1] gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1] Length = 418 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 189/345 (54%), Gaps = 7/345 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I + ++E GY T +Q A + L +KD++ AQTG+GKT AF L L +L D Sbjct: 10 QDIIQQVTELGYTTPTPIQLAAIPAVLAKKDLMAGAQTGTGKTAAFALPLLHQILQAKDS 69 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + + L + PTRELA QV AK + V GG S++ + L+ G ++ Sbjct: 70 NTTKGIQV-LVLTPTRELAQQVHASFLKYSAKLPIQSVVAYGGASINMQLDALRQGCDVL 128 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL + I +++S L+ +VLDEAD MLD+GF DI+ IL PK R+ L FSAT Sbjct: 129 VATPGRLLELIMKNLIDLSKLQTLVLDEADRMLDMGFIIDIQRILKKLPKSRQTLFFSAT 188 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-- 246 + I L+K KD + + S N + ++ + + DR +A+++ L G+KN Sbjct: 189 FNDEIFALSKTLLKDPQLIEVNSRNTTATQVE-QTIYAVDQDRKSALLSFL--IGSKNWQ 245 Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ K + + ++ G+ SQ R L + G+ R +ATDVAA Sbjct: 246 QVLIFTRTKQGADELAKEMEKDGIATQSIHGDKSQGARDRVLADFKAGKVRALVATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RGID+ L+ V++ EL N E+ +HR GRTGRAG G+++ ++ + Sbjct: 306 RGIDIEQLQYVVNHELPYNAEDYIHRIGRTGRAGSTGLAISLVSE 350 >gi|320322003|gb|EFW78099.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. glycinea str. B076] Length = 625 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis] gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis] Length = 523 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 200/355 (56%), Gaps = 10/355 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + +A E + + +Q+ + L+ KDV+ A+TGSGKT AF L + LL R+ Sbjct: 74 TLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRY 133 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA Q+G + E L + G+ V +GG+ + + L HI++ Sbjct: 134 ------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIII 187 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +FSAT Sbjct: 188 ATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSAT 247 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + KD V+V ++++ + + + + + +D +V+IL + + Sbjct: 248 MTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGNSFM 307 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FCST + + +L + L G++SQ +R AL + + I+TDVA+RG+ Sbjct: 308 IFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGL 367 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E+L Sbjct: 368 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQLL 422 >gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] Length = 492 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 185/342 (54%), Gaps = 6/342 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + +AL +GY T +Q + P L +D+L AQTG+GKT AF L + L E D Sbjct: 13 QPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLP-SIDRLREADN 71 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 +P + L +APTRELA Q+ + + A G+ V +GG SV ++R L G I+ Sbjct: 72 QTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSVGKDRNKLHRGTDIL 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D I K ++ ++ +VLDEAD+MLDLGF + I D P +R+ L FSAT Sbjct: 132 VATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVPAERQTLFFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---- 244 + I L Y ++ V+V++ ID +V ++ I IL+ A Sbjct: 192 MPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEMILKGRHAVPGK 251 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF T+ R K L + + A+ G SQ +R AL + + + IATDV Sbjct: 252 QERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKTPILIATDV 311 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + VI+ EL + PE +HR GRT RAG+ G+++ Sbjct: 312 AARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAI 353 >gi|241668567|ref|ZP_04756145.1| ATP-dependent RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877101|ref|ZP_05249811.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843122|gb|EET21536.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 445 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 185/343 (53%), Gaps = 10/343 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL A+ Sbjct: 11 LICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQ 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G Sbjct: 71 ANRIK------TLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D L L VLDEAD MLD+GF +D++ I PKK + LMF Sbjct: 125 EILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKRIHKLLPKKLQTLMF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT SP IT+LA + + V+ N I + + S + NA++++++ Sbjct: 185 SATFSPEITSLANEFLDNPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKDQDLH 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AA Sbjct: 245 QVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVLVATDIAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ L VI+ +L + E+ +HR GRTGRAG+ G+++ ++ Sbjct: 305 RGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLV 347 >gi|322436878|ref|YP_004219090.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9] gi|321164605|gb|ADW70310.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9] Length = 532 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 132/408 (32%), Positives = 223/408 (54%), Gaps = 13/408 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + L+ G+ T VQ + P L +D+L +A TG+GKT++F + + + A Sbjct: 68 NISASLKSRLAAGGFATPTPVQAKAIPPALEGRDILATASTGTGKTLSFLIPMIERMEAN 127 Query: 66 NDRFSPAS----APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 ++ P++ P+ +L + PTRELA+QV + ++ + GG+S + + Sbjct: 128 SE---PSTRGKKGPIRSLILLPTRELAMQVLEAYAKINPQSKSDSVLVCGGLSENTQLDQ 184 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G +VV TPGRL D +R + +N++ ++ +VLDE D MLD+GF I I+ + PK R Sbjct: 185 LSRGPRLVVATPGRLEDFLRRRSVNLNFVEMLVLDEVDRMLDMGFLPAIRRIVGALPKTR 244 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + + +SAT+ IT + ++Y + VR+ I + ++ ++ + V + D+ ++N + Sbjct: 245 QTMCYSATLDANITEIVRDYVQKPVRIEIGTTSKPSDQVELK-VFTVMQDQKLGLLNQML 303 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCI 299 +VF T+ R +K L E L V + G+ SQ +R++AL+ GR R+ + Sbjct: 304 NEHEGTFLVFSRTKHGADRISKKL-EKLGHVADVIHGDRSQSQRTSALKGFSTGRHRILV 362 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAER 358 ATDVAARGID+ D+ V++ +L E+ +HR GRTGRAG+KG+ + FV+PQ + A + Sbjct: 363 ATDVAARGIDVRDIAHVVNYDLPGTTEDFVHRIGRTGRAGKKGVATTFVMPQE-RSDARK 421 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406 + RE + W+ A ER+ L P L +++ K DV Sbjct: 422 MERELKIKFEWKEADKNLEKEERNKPVDLSGPSDLMNMETRAWKTGDV 469 >gi|91775611|ref|YP_545367.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91709598|gb|ABE49526.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] Length = 456 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 136/356 (38%), Positives = 202/356 (56%), Gaps = 27/356 (7%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FEN+ P ++ AL+E GY T +Q + L D++ SAQTG+GKT AF L A Sbjct: 3 FENLNLHPAIL-RALTEAGYSTPTPIQAQAIPEVLEGHDLMASAQTGTGKTAAFTLP-AL 60 Query: 61 TLLAENDRFSPASA--PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSV 114 LLA PA + P L + PTRELA QV ++L A+T +V GG+ Sbjct: 61 NLLATP---HPAKSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIV----GGMPY 113 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + L I+V TPGRL DH+ +++S L+ ++LDEAD MLD+GF DIE I Sbjct: 114 PLQNKLLSQPIDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERISS 173 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDN 233 + P +R+ LMFSAT I +AK K + IA++ +H++I+ + + V ++ ++ Sbjct: 174 ALPSERQTLMFSATFEGQIANIAKTLLKTPKVIQIAAQKEKHANIEQKLLFVDDMAHKNK 233 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF----QVVALSGELSQQERSNALQM 289 + ++L G AIVF ST+ R +LAE L+ + AL G+++Q R+ L Sbjct: 234 LLEHLLIAPGVNQAIVFTSTK----RHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTK 289 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +R G RV +ATDVAARGID+ + VI+ +L E+ +HR GRTGRAG G+++ Sbjct: 290 LRHGDVRVLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAL 345 >gi|330865776|gb|EGH00485.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 500 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|302134631|ref|ZP_07260621.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 629 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7] gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7] Length = 423 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 184/337 (54%), Gaps = 2/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + AL E GY T +QE + L KD+L AQTG+GKT AF L + ++ E + Sbjct: 10 QHLLHALKEAGYTKATPIQEDAIPHLLNNKDLLGCAQTGTGKTAAFALPILQNIMEE--K 67 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A AL +APTRELA+Q+G + + + V GGVS + + L+ G I+ Sbjct: 68 TVGKGAIKALILAPTRELAIQIGESFQTYAKYLPLNIQVIFGGVSQNPQTATLKRGTDIL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D IR + ++ ++ VLDEAD MLD+G D+ I+ PKKR+ + FSAT Sbjct: 128 IATPGRLLDLIRQGFVKLNQVEFFVLDEADMMLDMGMLRDVRHIIRELPKKRQSMFFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA + V+V + + I VA +D+ N ++++L+ + ++ Sbjct: 188 MPTEIEKLAGTILSNPVKVVVNPVSSTVEVILQSVYRVAKTDKTNLLIHLLKNKQVERSL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ K L + F A+ G SQ R AL+ + + V +ATD+AARGI Sbjct: 248 VFSRTKHGANKIVKKLLQAGFTAEAIHGNKSQNARQQALENFKTMKTSVLVATDIAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+P+L VI +L PE +HR GRTGRAG G ++ Sbjct: 308 DVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAI 344 >gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184] gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184] Length = 545 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 141/400 (35%), Positives = 212/400 (53%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALAST 61 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L A Sbjct: 76 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 134 Query: 62 LLAENDRF--------------SPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 A+ R P + P L + PTRELA+QV G+ L+ L Sbjct: 135 TQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 194 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 195 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 248 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF +DIE I+ ++P+ R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 249 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 306 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ F+ AL G+ Sbjct: 307 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 366 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 367 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 426 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFRE---ANVSVVWEP 371 AGR G++V ++ Q +R ER R NV +EP Sbjct: 427 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 466 >gi|157960228|ref|YP_001500262.1| ATP-dependent RNA helicase RhlB [Shewanella pealeana ATCC 700345] gi|189040044|sp|A8GZJ0|RHLB_SHEPA RecName: Full=ATP-dependent RNA helicase rhlB gi|157845228|gb|ABV85727.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 436 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 123/352 (34%), Positives = 199/352 (56%), Gaps = 15/352 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F + P + + +AL+E G+ T +Q L L +KD+ AQTG+GKT+AF +A + Sbjct: 11 FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH 70 Query: 62 LLAENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 LL+ +P A P A+ +APTRELA+Q+ ++ L TG+ V + GG Sbjct: 71 LLS-----TPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYE 125 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 +R+ L G I++GT GR+ D++R +N+S ++AVVLDEAD M DLGF DI F+ Sbjct: 126 VQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRR 185 Query: 176 SP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 P K R ++FSAT+S + LA ++ + +V IA + +I ++ ++ Sbjct: 186 MPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMP 245 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 ++++L + AIVF +T+ S + L + L+G++ Q++R L+ G Sbjct: 246 LLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKG 305 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +ATDVAARG+ + D+ V + +L + E+ +HR GRTGRAG+KG+SV Sbjct: 306 DIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSV 357 >gi|308809810|ref|XP_003082214.1| MGC81303 protein (ISS) [Ostreococcus tauri] gi|116060682|emb|CAL57160.1| MGC81303 protein (ISS) [Ostreococcus tauri] Length = 382 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 121/352 (34%), Positives = 200/352 (56%), Gaps = 12/352 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A E G+ +++Q+ + L+ +DV+ AQTGSGKT AF L + +LL E + Sbjct: 33 ACEELGWREPSAIQQKSIPEALQGRDVIGLAQTGSGKTGAFALPILQSLLDEPRTYH--- 89 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +L ++PTRELA+Q+ ++E L GV A +GG+ + + L H+VVGTPG Sbjct: 90 ---SLILSPTRELAIQIAEQVEALGRGIGVRTATLVGGIEMTSQAIMLGKRPHVVVGTPG 146 Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 R+ DH+ KG + LK +VLDEAD +L+L F ++I+ IL P+ RR +FSAT++ Sbjct: 147 RVVDHLENTKGFGLKALKVLVLDEADRLLNLDFEEEIDKILRVIPQDRRTQLFSATMTSK 206 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L + +D V+V ++++ + + + +D + A IVF Sbjct: 207 VQKLQRACLRDPVKVEVSAKYSTVDSLRQHYLFIPAKHKDCYATYLFNELSASTLIVFAR 266 Query: 253 TRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T +R ++A +L F V + G++SQ +R ALQ + G + IATDVA+RG+D+P Sbjct: 267 T-CDQTRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKAGERNILIATDVASRGLDIP 325 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 +++VI+ ++ N ++ +HR GRT RAGR G++V ++ Q + ++ ERL Sbjct: 326 SVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQKIERLI 377 >gi|86138673|ref|ZP_01057246.1| putative ATP-dependent RNA helicase protein [Roseobacter sp. MED193] gi|85824733|gb|EAQ44935.1| putative ATP-dependent RNA helicase protein [Roseobacter sp. MED193] Length = 431 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 203/373 (54%), Gaps = 7/373 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L++ G + T +Q + L +DVL AQTG+GKT AFG+ L S +L + Sbjct: 3 LPDQVLARLADMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLISRML-DY 61 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A L +APTRELA Q+ L+ L T + + + +GGVS++ + + + G Sbjct: 62 GRKPAAHTVRGLVLAPTRELANQIAATLKALTEGTPMKIGLVVGGVSINPQIQRISRGTD 121 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL D + L++ +VLDEAD+MLDLGF + I P++R+ ++FS Sbjct: 122 ILVATPGRLLDILDRNALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPEERQTMLFS 181 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + +A +Y VR+ + + + + +A +++ + + +L H + Sbjct: 182 ATMPKQMNEIANSYLNRPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLTEHKDER 241 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ + + KVL + F A+ G SQ +R AL + G+ +V +ATDVAAR Sbjct: 242 TLVFGRTKHGMEKLMKVLEKSGFAAAAIHGNKSQGQRERALAAFKSGQIKVLVATDVAAR 301 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ-----RRAERLF 360 G+D+PD++ V + EL + P+ +HR GRT RAG+ G +V F P M+ ++ ++ Sbjct: 302 GLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCSPDEMEELKAIQKVMKIT 361 Query: 361 REANVSVVWEPAP 373 WEP P Sbjct: 362 IPTASGSPWEPVP 374 >gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5] gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5] Length = 506 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 185/340 (54%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI VI +AL++ Y T +Q + L +D+L AQTG+GKT AF + + L + Sbjct: 7 NISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQLLNQQ 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL ++PTRELA+Q+ ++ T + +GGVS + R LQ GA Sbjct: 67 PPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D + K +++ H++ +VLDEAD MLD+GF D++ I+ P K++ L F Sbjct: 127 DILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKKQTLFF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ IT L + + V+V I + I+ L+ ++ + +++ Sbjct: 187 SATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELMKDSSIV 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +A+VF T+ R + L + A+ G+ SQ R AL + G RV +ATD+AA Sbjct: 247 SALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L VI+ L + PE +HR GRTGRAG G ++ Sbjct: 307 RGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAI 346 >gi|86132795|ref|ZP_01051387.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] Length = 425 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 132/378 (34%), Positives = 201/378 (53%), Gaps = 8/378 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+SE+GY + +Q+ + L KDVL SAQTG+GKT F L + L+A N R Sbjct: 14 KAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLHNLIA-NPRQGRR 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA Q+ + + V GGV+ + + R ++ G I+V TP Sbjct: 73 KV-RALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTIRQGVDILVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D L++S ++ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT + Sbjct: 132 GRLLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQNLLFSATFNKD 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + V V EN +D + V S + ++ + +VF Sbjct: 192 IKKLASSILTNPVLVEATPENTTAEKVDQKTYRVDKSRKTEMLIKFINEGNWDQVLVFTR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R ++ L + A+ G +Q R AL + G+ RV +ATD+AARG+D+P Sbjct: 252 TKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVLVATDIAARGLDIPL 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369 L VI+ EL + PE+ +HR GRTGRAG G ++ ++ + R E+L E S V Sbjct: 312 LPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRGIEKLLGEKLHSEVL 371 Query: 370 E---PAPSVEAIRERDAQ 384 E P ++E +++ A+ Sbjct: 372 EGFQPTDTLEQLKKEAAE 389 >gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5] gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5] Length = 500 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 189/344 (54%), Gaps = 6/344 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +QE + L +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTMLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + A + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKEQFDKYGAGQKLTVALLIGGVSFGDQDVKLTRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +V+DEAD MLD+GF DIE + P R+ L F+AT+ P I Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFTATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILR-YHGAKNAIVF 250 + + + + ++ ++ + V ++ + ++R +NAI+F Sbjct: 192 RRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIRAATDLQNAIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ K L +H F V AL G++ Q R+ AL R G + +A+DVAARG+D+ Sbjct: 252 CNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILVASDVAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 P++ V + ++ +P++ +HR GRTGRAGR G ++ ++ + Q+ Sbjct: 312 PEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQK 355 >gi|257483568|ref|ZP_05637609.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 514 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis EO147] gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis C6786] Length = 509 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 141/397 (35%), Positives = 208/397 (52%), Gaps = 42/397 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-------LAS 60 P+++ AL GY T VQ+ + + +D+LVS+ TGSGKT AF L L Sbjct: 49 PEIV-SALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 107 Query: 61 TLLAE----------NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGV 103 T + R P + P L + PTRELA+QV G+ L L + Sbjct: 108 TQAQQPREPQQGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS-- 165 Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163 +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD MLD+ Sbjct: 166 ----ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDM 221 Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223 GF DDIE I+ ++P R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 222 GFIDDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEI--QQRLESRTNIAQ 279 Query: 224 VLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280 + + DRD+ + ++LR AI+F +T+ + LA+ F+ AL G+L Q Sbjct: 280 TVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQ 339 Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340 R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR Sbjct: 340 GARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGR 399 Query: 341 KGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371 G +V ++ Q +R ER R NV +EP Sbjct: 400 SGTAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEP 436 >gi|332531386|ref|ZP_08407291.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella gracilis ATCC 19624] gi|332039170|gb|EGI75591.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella gracilis ATCC 19624] Length = 468 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 193/347 (55%), Gaps = 10/347 (2%) Query: 2 KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K FE +P E L GY+ +T++Q A L L+ +DV+ A+TGSGKT AF ALA Sbjct: 9 KSFETLPLSAAAQENLRRLGYLEMTAIQAASLPAALQGRDVIAQAKTGSGKTAAF--ALA 66 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRER 118 + RF+ S L + PTRELA QV E+ L A+ + V GGV + + Sbjct: 67 LLAKLDARRFAVQS----LVLCPTRELADQVTTEIRRLARAEDNIKVVTLAGGVPLRGQA 122 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L++GAH+VVGTPGR+ DH+ L + L +VLDEAD MLD+GF DDI + P Sbjct: 123 ASLEHGAHVVVGTPGRVIDHLERGNLGLDALATLVLDEADRMLDMGFVDDIVKVARQCPA 182 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT I LA + ++ V V + +++ I+ R V R + + Sbjct: 183 QRQTLLFSATYPEGIAKLAAQFLREPVTVKVQAQHGSE-QIEQRWYEVREEQRLPGVARL 241 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + + + FC+T+A ++L + +AL G+L Q+ER L + V Sbjct: 242 LEHFRPVSTLAFCNTKARCRELAELLQAQGYSALALHGDLEQRERDQVLVRFANSSCSVL 301 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+D+ L VI+ + S +P+ +HR GRTGRAG+ G+++ Sbjct: 302 VATDVAARGLDIAGLAAVINVDTSPDPQAYVHRIGRTGRAGQTGLAL 348 >gi|224370609|ref|YP_002604773.1| DeaD [Desulfobacterium autotrophicum HRM2] gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2] Length = 616 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 128/373 (34%), Positives = 203/373 (54%), Gaps = 13/373 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + GY T++Q + L +D+L AQTG+GKT AF L L S + + + Sbjct: 32 KALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPLLSRIDIKLKK---- 87 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTRELA+QV + A+ G V GG + + L+ G H++VGT Sbjct: 88 --PQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKRGVHVIVGT 145 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D ++ L+++ + +V+DEADEML +GF DD+E+IL+ +P R++ +FSAT+ Sbjct: 146 PGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVALFSATMPA 205 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A Y D V I I R +V + + +A+ IL IVF Sbjct: 206 PIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILEAETFDAIIVFV 265 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L + VAL+G+++Q+ R + + G+ + +ATDVAARG+D+ Sbjct: 266 RTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVATDVAARGLDVE 325 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368 + VI+ ++ + E+ +HR GRTGRAGR G ++ FV P+ M + E+ R+ + Sbjct: 326 RVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIEKTTRQ---QIE 382 Query: 369 WEPAPSVEAIRER 381 PS EAI ++ Sbjct: 383 MMKLPSTEAINDK 395 >gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82] Length = 498 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 198/367 (53%), Gaps = 7/367 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P+ + ++ +G+ T +Q L +DV+ AQTGSGKT++F L A + Sbjct: 68 FPEYLMSSIRAQGFDAPTPIQCQAWPMALTGRDVVAIAQTGSGKTISFALP-AMLHINAQ 126 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +P P+AL +APTRELAVQ+ +E + + + GG + RDLQ G Sbjct: 127 PLLAPGDGPIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVE 186 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ TPGRL D + + N+ + +V+DEAD MLD+GF I I+ R+ LMFS Sbjct: 187 IVIATPGRLIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFS 246 Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT + LA ++ +D ++VNI S E + +I + + ++ N ++ L A+ Sbjct: 247 ATWPKDVQKLANDFLRDMIQVNIGSMELTANHNIQQIVEVCSDFEKRNKLIKHLDQISAE 306 Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 NA ++F +T+ TK L + + +A+ G+ Q+ER L + GR+ + IATDV Sbjct: 307 NAKVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDV 366 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---F 360 A+RG+D+ D+ VI+ + +N E+ +HR GRTGRAG KG+S + + A L Sbjct: 367 ASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKGISYTYFTTDNAKSARELIGIL 426 Query: 361 REANVSV 367 REA +V Sbjct: 427 REAKATV 433 >gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434] gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434] Length = 557 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 186/345 (53%), Gaps = 7/345 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69 I +AL+++G ++ +Q L L +DV+ A+TG+GKT+ FG+ L L + Sbjct: 71 ISQALADKGIIHPFPIQALTLPVALDGRDVIGQAKTGTGKTLGFGIPLLMDTLGPGEEGW 130 Query: 70 --SPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 PAS +P AL + PTRELA QV EL AK V + GG + + L+ GA Sbjct: 131 DEDPASGSPQALVVLPTRELAKQVATELAQAAAKRTVRIVQVYGGRAYEPQIEALEKGAE 190 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + L++ H+ VVLDEADEMLDLGF D+E IL + R+ ++FS Sbjct: 191 VVVGTPGRLIDLMERGVLSLEHVTTVVLDEADEMLDLGFLPDVEKILARTRPDRQTMLFS 250 Query: 187 ATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 AT+ A+ LA+ Y + + E+ + + ++ + IL+ G Sbjct: 251 ATMPGAVVALARRYMSKPTHIRAQDPGDESMTVTSVKQVVYRTHALNKVEVVSRILQARG 310 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + +R + L F AL G+L Q R AL+ R G+ V +ATDV Sbjct: 311 RGRTIIFTRTKRTAARVAEDLGSRGFATAALHGDLGQGAREQALRAFRHGKVDVLVATDV 370 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ D+ VI+ + + + +HR GRTGRAG G +V + Sbjct: 371 AARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGHSGTAVTFV 415 >gi|240850851|ref|YP_002972251.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup] gi|240267974|gb|ACS51562.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup] Length = 460 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 204/361 (56%), Gaps = 9/361 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ + L G +QE + L+ D+L AQTGSGKT+AFGL + S +LA Sbjct: 14 LPTLLIKNLLIAGMSKPKPIQEQAIPVMLKGHDILGVAQTGSGKTLAFGLPILSQILALG 73 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRERRDLQNG 124 D+ P +A AL +APTRELAVQ+ + A G ++ C+ GGVS ++ + ++ G Sbjct: 74 DKRCPKTA-RALILAPTRELAVQIDETIRT--AAKGAHLSTCLIFGGVSRLKQIKRMEAG 130 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +++ TPGRL D +R K +++S + ++LDEAD MLD+GF D++ I ++R+ + Sbjct: 131 VDVLIATPGRLKDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQTAL 190 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LAK D V++ + + +I + V +++ N + +L Sbjct: 191 FSATMPREIAVLAKCLLNDPVKIEVVPQGTTAVEICQKLYCVPTNEKKNVLSKLLTNPAF 250 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T+ T+ LA+ + V + G SQ R +AL+ R+ ++ +ATD+A Sbjct: 251 NSVIVFTRTKHGADSVTRSLAKIGYSVATIHGNKSQGARQSALKAFRERSVQILVATDIA 310 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RA-ERLF 360 ARGID+P + VI+ +L E+ +HR GRTGR G G ++ + + ++R RA ERL Sbjct: 311 ARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERERLRAIERLI 370 Query: 361 R 361 R Sbjct: 371 R 371 >gi|29347295|ref|NP_810798.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|29339194|gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] Length = 374 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 121/350 (34%), Positives = 192/350 (54%), Gaps = 1/350 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY T +QE + L +KD+L AQTG+GKT +F + + L Sbjct: 7 NITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPIIQHLHL- 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N S AL + PTRELA+Q+ +E T + V GGV+ + L G Sbjct: 66 NKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLHKGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + + + +++ VLDEAD MLD+GF DI+ IL PK+++ L F Sbjct: 126 DILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L + K+ V++ + ++ I V ++ +++IL+ + Sbjct: 186 SATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQKSEDR 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++F T+ + + K+L + A+ G SQ R +AL + G+ RV +ATD+A+ Sbjct: 246 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 RGID+ +L LVI+ +L PE +HR GRTGRAG GM++ Q +++ Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQ 355 >gi|323485086|ref|ZP_08090439.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum WAL-14163] gi|323401642|gb|EGA93987.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum WAL-14163] Length = 484 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 126/343 (36%), Positives = 186/343 (54%), Gaps = 16/343 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E+L GY T +Q+ ++ L K+V+ A TGSGKT AF + + ++ E + Sbjct: 18 ILESLRLLGYERPTEIQQQVIPAMLEGKNVVGRAPTGSGKTAAFAIPICDKIIWEEN--- 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTREL VQV E+ + K + V GG + ++ R L+ +HIV G Sbjct: 75 ---LPQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQKSHIVTG 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHIR L + + +V+DEAD MLD+GF D+++ ILD + R+ +FSAT+ Sbjct: 132 TPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIALFSATLK 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-----AIVNILRYHGAK 245 P I A ++ D V I +E + ++ A+ L + DN +N+L + Sbjct: 192 PEIREFAGSHIHDMVM--IFTEQPEAAE---NAITEELFETDNENKFKVFLNVLYRENPQ 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+FC TR V+ + L H + GEL Q+ER + R G R IATDVAA Sbjct: 247 CCIIFCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGIDL ++ VI+ + + E +HR GRTGR GR G +V ++ Sbjct: 307 RGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGKAVSLV 349 >gi|325106943|ref|YP_004268011.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305] gi|324967211|gb|ADY57989.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis DSM 5305] Length = 399 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 111/330 (33%), Positives = 181/330 (54%), Gaps = 7/330 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+ + E L GY + + +Q + P L+ D L +QTG+GKT AF + + L + + Sbjct: 26 PETV-EHLKSVGYEHPSPIQRDFIPPALKGVDCLGQSQTGTGKTAAFMMPVLELLKEQQE 84 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + PTREL+ QV E + + + + +AV +GG + + + ++ G + Sbjct: 85 E------PQALVLCPTRELSEQVAVEAQKISRFSKLEIAVVVGGRPLKAQMQKIERGVDV 138 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ D + K L++ +++ VLDEAD MLD+GFR D+EFIL PK+R+ L+ SA Sbjct: 139 VVGTPGRVIDLFKRKSLSLKNIRLAVLDEADRMLDIGFRPDMEFILKQCPKERQTLLLSA 198 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ + LA + KD VR++I +N ++ V + ++ +L K A Sbjct: 199 TLPSEVERLANRFMKDPVRIDIEPQNVTADRVEQFYCTVDEHRKLQLLIKLLVQEKPKQA 258 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVFC T+ + L V L G+L Q +R ++ R G+ R+ IATD+ RG Sbjct: 259 IVFCRTKRKADQLYNKFQTRLDGVETLHGDLPQSKRDRVMKQFRAGKVRMLIATDIVGRG 318 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGR 337 ID+ + +I+ ++ + ++ +HR GR GR Sbjct: 319 IDVGGISHIINYDIPEHSDDYVHRIGRAGR 348 >gi|89094261|ref|ZP_01167203.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92] gi|89081516|gb|EAR60746.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92] Length = 592 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 128/385 (33%), Positives = 212/385 (55%), Gaps = 13/385 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64 I + + + L E GY + +Q A + L +D+L AQTG+GKT AF L L S L + Sbjct: 14 IAEPVLKVLDEIGYETPSPIQAASIPHLLEGRDLLGIAQTGTGKTAAFSLPLLSRLNLKS 73 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQ 122 N + L +APTRELA+QV + YA+ V GG + + R L+ Sbjct: 74 RNTQL--------LILAPTRELAIQVAEACQT-YARNLPDFHVLPIYGGQAYDSQLRQLK 124 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 GA +VVGTPGR+ DH+R L + L+A+VLDEADEML +GF DD+ ++L+ +P+ R++ Sbjct: 125 RGAQVVVGTPGRVMDHMRRGSLKLDKLQALVLDEADEMLRMGFIDDVNWVLEHTPEDRQI 184 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ I ++A+ + D V I ++ + I + + V+ + + +A+ IL Sbjct: 185 ALFSATMPAQIKSVAEAHLNDPAEVRIKAKTATATTITQKYLRVSGNQKLDAVTRILEMQ 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +VF T+++ + L+ + AL+G++SQ R + ++ G+ + IATD Sbjct: 245 AFDAMLVFVRTKSATVELAEKLSARGYACEALNGDISQNLRERTIDKLKRGQIDILIATD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 V ARG+D+ + V++ ++ + E+ +HR GRTGRAGR+G ++ + QR + + R Sbjct: 305 VVARGLDVERISHVLNYDIPYDTESYIHRIGRTGRAGREGEAILFVSPREQRMLKSIERA 364 Query: 363 ANVSVVWEPAPSVEAIRERDAQRIL 387 + PS + I E+ QR + Sbjct: 365 TRQKIESMQLPSTDDINEKRVQRFV 389 >gi|310658279|ref|YP_003936000.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium sticklandii DSM 519] gi|308825057|emb|CBH21095.1| atp-dependent rna helicase, dead/deah box family [Clostridium sticklandii] Length = 423 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 113/344 (32%), Positives = 188/344 (54%), Gaps = 6/344 (1%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +QE + L+ KD++ AQTG+GKT+AF L L +L EN S P L + PT Sbjct: 26 TKIQEQAIPLILKGKDIIGKAQTGTGKTLAFVLPLIQ-MLDEN-----ISIPQVLILTPT 79 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA+Q+ +E L + V GG V +++ L+N A VVGTPGR+ DHIR Sbjct: 80 RELALQITTVVEELLKDSAFDVVSVYGGHDVEKQKNQLKNNAQFVVGTPGRILDHIREGS 139 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 +N +LK VV+DEAD+M+ GF +D++ + D +P+K + ++FSATI I LA+ + Sbjct: 140 INFKNLKHVVIDEADQMMAFGFMEDLDLLFDKTPQKIQKMIFSATIPDMIRKLARKIMNN 199 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 A+ ++I E+ +I V R ++ L+ A++FC ++ + Sbjct: 200 AINIDIDPESVVIDNIRQVVVRTTEERRLQSLEMALKEFKPFMAMIFCKSKERANELYDN 259 Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323 + + V L G+ SQ +R N ++ R+ + + TD++ARG+D+ + V + ++ Sbjct: 260 MVNLRYDVEILHGDFSQNKRENIMKRFRELKFPFLVTTDISARGMDIDGITHVFNYDIPR 319 Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 E +HR GRTGRAG KG++V + + +++ + +S+ Sbjct: 320 QIEYYIHRVGRTGRAGEKGIAVSFVADKEVEQMKKIQKTVGISI 363 >gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996] gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996] Length = 457 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 193/369 (52%), Gaps = 12/369 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ K+ V + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-------FVIPQNMQRRA 356 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ +V +++ Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365 Query: 357 ERLFREANV 365 +R E V Sbjct: 366 DRKLNEVTV 374 >gi|330984676|gb|EGH82779.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 625 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|127511538|ref|YP_001092735.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126636833|gb|ABO22476.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 491 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 184/338 (54%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++++GY + +Q + L KDV+ +AQTG+GKT F L L LL++ R Sbjct: 12 ILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLE-LLSQGPRAR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA Q+ + + AV GGV + + L+ G I+V Sbjct: 71 SKQV-RALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQLKRGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ S L+ +VLDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 130 TPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I TLAK + V +++ N + + V + + A+V +++ + +VF Sbjct: 190 DEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQGDWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 250 SRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLV 347 >gi|67900874|ref|XP_680693.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4] gi|74656963|sp|Q5AWA6|DBP3_EMENI RecName: Full=ATP-dependent RNA helicase dbp3 gi|40742814|gb|EAA62004.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4] Length = 498 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 125/335 (37%), Positives = 189/335 (56%), Gaps = 10/335 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ + T++Q A +DV+ A+TGSGKT+AFGL +L + + PLA+ Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTK-QKSCRPLAV 150 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 I+PTRELA+Q+ +L K + VA GGV +R L++ A +VV TPGRL D Sbjct: 151 VISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDL 209 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLA 197 L++ +K +VLDEAD MLD GF DI+ I+ P KR+ +MF+AT P + LA Sbjct: 210 QNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLA 269 Query: 198 KNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIV-F 250 + V V I +++ R +S I +V +++ +V IL H G + ++ F Sbjct: 270 STFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAF 329 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C + R ++L F+V + G+LSQQER +L+ + G A V +ATDVAARG+D+ Sbjct: 330 CLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDI 389 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 P ++LV++ E+ +HR GRTGRAG G ++ Sbjct: 390 PHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAI 424 >gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp. Y412MC10] gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10] Length = 506 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 185/340 (54%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI VI +AL++ Y T +Q + L +D+L AQTG+GKT AF + + L + Sbjct: 7 NISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQLLNQQ 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL ++PTRELA+Q+ ++ T + +GGVS + R LQ GA Sbjct: 67 PPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQGA 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D + K +++ H++ +VLDEAD MLD+GF D++ I+ P K++ L F Sbjct: 127 DILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKKQTLFF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ IT L + + V+V I + I+ L+ ++ + +++ Sbjct: 187 SATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELMKDPSIV 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +A+VF T+ R + L + A+ G+ SQ R AL + G RV +ATD+AA Sbjct: 247 SALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L VI+ L + PE +HR GRTGRAG G ++ Sbjct: 307 RGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAI 346 >gi|330967974|gb|EGH68234.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 629 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|207742395|ref|YP_002258787.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] gi|206593785|emb|CAQ60712.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] Length = 545 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 198/373 (53%), Gaps = 11/373 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71 A++E GY T +Q + L+ D+L AQTG+GKT F L L L A N +P Sbjct: 15 AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVHTP 74 Query: 72 ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AL + PTRELA QV + + V GGV ++ + L+ G IV Sbjct: 75 HGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N ++ R V + + ++R + + Sbjct: 195 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L +A+ G SQ R+ AL + G RV +ATD+AARGI Sbjct: 255 VFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL RE Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374 Query: 365 VSVV--WEPAPSV 375 +V+ +EP P++ Sbjct: 375 RTVLEGFEPDPTI 387 >gi|117619806|ref|YP_855172.1| DEAD-box ATP dependent DNA helicase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561213|gb|ABK38161.1| ATP-dependent RNA helicase, dead box family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 406 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 123/322 (38%), Positives = 182/322 (56%), Gaps = 6/322 (1%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T VQ+ + L +D+L A+TGSGKT+AFGL L L +DR L + PT Sbjct: 24 TRVQQLAIPAALAGRDLLALARTGSGKTLAFGLPLLQRLDPASDRVQ------GLVLVPT 77 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELAVQV L+ A G+ + GGV+ ++ +L G ++V TPGRL D + + Sbjct: 78 RELAVQVSEALQGPAAGLGLRLVTLCGGVAQALQQAELALGPQLLVATPGRLRDLLAQQL 137 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L +S L+ +VLDEAD +L++GF DI+++L++ P +R+ L+FSAT+ + LA + Sbjct: 138 LGLSQLRHLVLDEADRLLEMGFWPDIQWLLNAMPVERQTLLFSATLPAELDALATGLLTE 197 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 VRV N DI+ R LV S + A++++L+ H +VF S R + Sbjct: 198 PVRVEADPRNSVADDIEERLYLVNKSSKVPALISLLKAHEWPQVLVFISARDDADGVARK 257 Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323 LA+ V AL GE Q R AL + G+ RV +ATD+ ARGI + L LVI+ +L + Sbjct: 258 LAKAGITVAALHGEKEQAVREQALGDFKAGKVRVLVATDLMARGIHVEALPLVINLDLPA 317 Query: 324 NPENLLHRSGRTGRAGRKGMSV 345 + +HR GRT RAGR G+++ Sbjct: 318 SAPVYVHRIGRTARAGRSGLAI 339 >gi|50842805|ref|YP_056032.1| putative ATP-dependent RNA helicase [Propionibacterium acnes KPA171202] gi|50840407|gb|AAT83074.1| putative ATP-dependent RNA helicase [Propionibacterium acnes KPA171202] gi|314923604|gb|EFS87435.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1] gi|314966442|gb|EFT10541.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2] gi|315092781|gb|EFT64757.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1] gi|315103751|gb|EFT75727.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2] gi|315105899|gb|EFT77875.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1] gi|327327264|gb|EGE69040.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL103PA1] Length = 561 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68 I +AL G V+ +Q + + D++ A+TG+GKT+AFG+ + + D Sbjct: 64 ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLRITLPGDEGW 123 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P AL + PTRELA+QV +++ + G V GGV + L+ G Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYESQIDALKAGVD 183 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + K L++SH++ VVLDEADEMLDLGF D+E ++ +P R+ ++FS Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244 AT+ I LA++ V V + Q + D + + D+ I IL+ + Sbjct: 244 ATMPAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDV 303 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+FC T+ + R + L + F+ A+ G+L+Q R AL+ R G A + +ATDVA Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVA 363 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ E + + +HR GRTGRAG KG++V ++ Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLV 407 >gi|313896720|ref|ZP_07830268.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974637|gb|EFR40104.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral taxon 137 str. F0430] Length = 423 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 209/382 (54%), Gaps = 16/382 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L RG T VQE + P +R +DV+ AQTG+GKT+AF LL ++ P Sbjct: 17 LKNRGISVPTPVQERAV-PAMRVGRDVIAQAQTGTGKTLAF-------LLPVLEKIKPQG 68 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A + AL IAPTRELA+Q+ R E L A + + GG + R++ L+ +V+GTP Sbjct: 69 AVVQALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLRRHPQLVIGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R L + + VVLDEADEML LGF +D+E +L + + ++ +FSAT+ Sbjct: 129 GRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDYQLALFSATMPER 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L K + + R+ I E+ +I+ A+ V ++ + + + A+VFC+ Sbjct: 189 IVQLTKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCASINEEAPYLAMVFCA 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ LA + V ALSG L+Q +R+ L+ R + ++ ATD+AARG+D+ Sbjct: 249 TKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQILCATDIAARGLDIEG 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFRE--ANVSV 367 + V + +L + +HR GRTGRAG +G ++ ++ R+ E +E A +V Sbjct: 309 VTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLRKIEAALKERLARAAV 368 Query: 368 VWEPAPSVE-AIRERDAQRILQ 388 +P P+ + A +++ +R++Q Sbjct: 369 KKKPRPAPQKAQPDKEGRRVVQ 390 >gi|330951359|gb|EGH51619.1| helicase [Pseudomonas syringae Cit 7] Length = 629 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|289647882|ref|ZP_06479225.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. aesculi str. 2250] Length = 625 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis HTCC2601] gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. HTCC2601] Length = 430 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 197/368 (53%), Gaps = 5/368 (1%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + EAL G+ T +Q + L DVL AQTG+GKT+AFGL L LLA+ + Sbjct: 12 TLSEALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLIDGLLAQPGKP 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 +P + AL +APTREL Q+ L L T + V +GG S++R+ L G I+V Sbjct: 72 APKTVK-ALVLAPTRELVNQIADSLRQLTDGTKLRVGTVVGGQSINRQINFLSRGTDILV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + K +++S ++ +VLDEAD+MLD+GF + I R+ ++FSAT+ Sbjct: 131 ATPGRLIDLMDRKAVDLSTVRQLVLDEADQMLDMGFIHALRRIAPQLGTPRQTMLFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + L+ Y + RV ++ + I V + + + + +L +V Sbjct: 191 PKQMEELSSAYLTNPRRVQVSPPGKAADKITQSVHFVDKAGKPSKLRELLGRDDESLTLV 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ R K L + ++ G SQ +R A++ RDG V +ATDVAARGID Sbjct: 251 FARTKHGAERLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGDINVLVATDVAARGID 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFREANVS 366 +P + V++ +L P+N +HR GRT RAGR+G ++ F P ++ R+ ++L + ++ Sbjct: 311 IPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQIQKLMK-IDIP 369 Query: 367 VVWEPAPS 374 V AP+ Sbjct: 370 VASGDAPT 377 >gi|28872183|ref|NP_794802.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato str. DC3000] gi|213971879|ref|ZP_03399980.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato T1] gi|301385283|ref|ZP_07233701.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato Max13] gi|28855437|gb|AAO58497.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213923363|gb|EEB56957.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato T1] gi|331015971|gb|EGH96027.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 629 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|149278660|ref|ZP_01884796.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39] gi|149230655|gb|EDM36038.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39] Length = 435 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 179/344 (52%), Gaps = 2/344 (0%) Query: 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FE N+ + I +AL GY T +QE + L +D+L AQTG+GKT AF + + Sbjct: 2 LFEELNLIEPILKALQTEGYTQPTPIQEQSIPTILTSRDLLGCAQTGTGKTAAFAIPMLQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L E+ AL + PTRELA+Q+ + + V GGV + Sbjct: 62 LLNKEHQNAKGPRPIRALVLTPTRELAIQIEESFKAYGRNLSLRHLVIFGGVGQKAQTDA 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G I++ TPGRL D + +N+ ++ VLDEAD MLD+GF D++ + P KR Sbjct: 122 LHRGVDILIATPGRLLDLMNQGFINLKDIEIFVLDEADRMLDMGFIHDVKKTIAKLPAKR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L FSAT+ P I LA D ++V + + I+ V D+ N +++IL+ Sbjct: 182 QTLFFSATMPPEIQKLANTILVDPLKVEVTPVSSTAEKIEQMIYFVEKGDKKNLLIHILQ 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + A+VF T+ R K L + + A+ G SQ R AL + R+ +A Sbjct: 242 DKTIQTALVFTRTKHGADRVVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRILVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 TD+AARGID+ +L VI+ EL + PE +HR GRTGRAG G+S Sbjct: 302 TDIAARGIDVDELTHVINYELPNIPETYVHRIGRTGRAGNSGIS 345 >gi|291006385|ref|ZP_06564358.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 467 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 121/350 (34%), Positives = 191/350 (54%), Gaps = 8/350 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL E G + ++QE L LR +D++ A+TG+GKT+ FG+ + L D Sbjct: 3 PEIV-RALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPGD 61 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + PTREL VQV R+L G+ GG ++ L++G + Sbjct: 62 -----GTPQALVVVPTRELCVQVARDLTDAGKHLGIRTLAVYGGRPYEQQIEALRSGVDL 116 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 V+GTPGRL D + L + ++A+VLDEADEMLDLGF DIE IL P++R+ ++FSA Sbjct: 117 VIGTPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSA 176 Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 T+ I TLA+ + Q +R A H D+ I ++ +G Sbjct: 177 TMPGPIITLARTFLRQPTHIRAEQADAGAIHERTKQFVYRAHAMDKTELIARAMQANGRG 236 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++F T+ + + + L E F A+ G+L Q R AL+ R G+ + +ATDVAA Sbjct: 237 LSMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVAA 296 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 RGID+ + V++ + + + +HR GRTGRAGR+G+++ ++ + + R Sbjct: 297 RGIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLVDWDEEPR 346 >gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1] gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1] Length = 438 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 184/336 (54%), Gaps = 4/336 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S++GY + +Q + L KDVL SAQTG+GKT F L + LL++ Sbjct: 15 AISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPMLQ-LLSQQPPLR--K 71 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QV ++ + V GGV+ + L+NG I+V TP Sbjct: 72 RPIRALILTPTRELAAQVYANVKEYSTFLDIRSTVIFGGVNARPQIATLRNGVDILVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D K L+++ ++ +VLDEAD MLD+GF DI+ +++ PK+R+ L+FSAT S Sbjct: 132 GRLLDLHSQKALSLAKVEMLVLDEADRMLDMGFLRDIKRVIELVPKRRQNLLFSATFSKD 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA++ V V EN ++ + V + ++ ++ +VF Sbjct: 192 IKKLAQSILHHPVSVEATPENTTAEKVNQKVYKVDKPRKTELLIKLISEGNWSQVLVFTR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R TK L A+ G +Q R+ AL + G R+ +ATD+AARG+D+P Sbjct: 252 TKHGANRLTKKLIAKHISAAAIHGNKTQNARTKALDGFKKGTIRILVATDIAARGLDIPL 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L VI+ EL + PE+ +HR GRTGRAG G ++ ++ Sbjct: 312 LPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLV 347 >gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786 str. D14] gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786 str. D14] Length = 410 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 120/339 (35%), Positives = 191/339 (56%), Gaps = 1/339 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP ++ +AL + Y T +Q+ + P L +D+L AQTG+GKT AF + L + Sbjct: 9 IPSIL-KALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTLQLLHKDG 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL I PTRELA+Q+ + AV GGVS + LQ G Sbjct: 68 APRAGRRNIRALVITPTRELALQIYENFCAYGKYLPLKCAVIFGGVSQKPQEAALQKGVD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL D ++ K +++ +++ ++LDEAD MLD+GF D++ I+ +P +R+ L+FS Sbjct: 128 ILVATPGRLNDLMQQKLIDLKNVELLILDEADRMLDMGFIHDVKKIIAKTPSQRQTLLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ AI +A + ++ V+V I + I V ++ + ++++L+ ++ Sbjct: 188 ATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLYYVDKGNKRDLLIHLLKDPSIES 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF T+ R + L + A+ G+ SQ R ALQ ++ RV +ATD+AAR Sbjct: 248 AIVFTRTKHGADRLVRHLTKAQVSAKAIHGDKSQGARQTALQDFKNRTLRVLVATDIAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 GID+ +L VI+ EL + PE +HR GRTGRAG+ G+++ Sbjct: 308 GIDIDELSHVINYELPNIPETYVHRIGRTGRAGQSGVAI 346 >gi|71280656|ref|YP_266818.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H] gi|71146396|gb|AAZ26869.1| ATP-dependent RNA helicase, DEAD box family [Colwellia psychrerythraea 34H] Length = 420 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 190/338 (56%), Gaps = 7/338 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E Y T +Q+ + L + DV+ AQTG+GKT AF L + L++ P Sbjct: 18 KAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLIS----VQPC 73 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L AL + PTRELA QV + T V + + GGVS ++ +L+ G I++ T Sbjct: 74 KPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D +R + +++S+++ +V DEAD MLD+GF+++I+ I PK ++ L+FSAT + Sbjct: 134 PGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFAD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVF 250 I ++KN + V I +N+ D++ + V +DR + + L K +VF Sbjct: 194 DIYKMSKNILVEPKMVEIDEKNKAADDVE-QLVYGVDADRKRELTSFLIGSRNWKQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ K + + + +A+ G+ SQ R AL ++G+ R IATDVAARGID+ Sbjct: 253 TRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L VI+ EL N E+ +HR GRT RAG G++V ++ Sbjct: 313 KGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLV 350 >gi|294666446|ref|ZP_06731689.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603752|gb|EFF47160.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 458 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 140/413 (33%), Positives = 212/413 (51%), Gaps = 16/413 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P L+ DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRRL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + +VVGTPGR+ + R L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKLALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT +I TLA+ K+ V + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGAD-SAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R + L +D + D+ + D+L Sbjct: 352 RAQALETEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403 >gi|207727993|ref|YP_002256387.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] gi|206591237|emb|CAQ56849.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2] Length = 559 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 198/373 (53%), Gaps = 11/373 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71 A++E GY T +Q + L+ D+L AQTG+GKT F L L L A N +P Sbjct: 31 AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVHTP 90 Query: 72 ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AL + PTRELA QV + + V GGV ++ + L+ G IV Sbjct: 91 HGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 150 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT Sbjct: 151 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 210 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N ++ R V + + ++R + + Sbjct: 211 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 270 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L +A+ G SQ R+ AL + G RV +ATD+AARGI Sbjct: 271 VFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 330 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL RE Sbjct: 331 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 390 Query: 365 VSVV--WEPAPSV 375 +V+ +EP P++ Sbjct: 391 RTVLEGFEPDPTI 403 >gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3] gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3] Length = 649 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 127/343 (37%), Positives = 190/343 (55%), Gaps = 16/343 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G V+ +QE L L D++ A+TG+GKT+AFG+ + T+LA + Sbjct: 99 ALTEAGIVHAFPIQELTLPLALARNDIIGQARTGTGKTLAFGVPVVQTVLAAKEGAD--G 156 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTREL VQV ++ A+ G+ V GG + + L+ G IVVGTPG Sbjct: 157 RPQALVVVPTRELCVQVTADVTRAGARRGLRVLSVYGGRAYEPQLSALRAGVDIVVGTPG 216 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R L+++ + +VLDEADEMLDLGF D+E I+ P +R+ ++FSAT+ + Sbjct: 217 RLLDLARQHVLDLAGVGTLVLDEADEMLDLGFLPDVERIMSQLPTERQTMLFSATMPGPV 276 Query: 194 TTLAKNYQKDAVRV--------NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 +LA+ + K V V RQH +RA + D+ + +L+ G Sbjct: 277 ISLARRFMKRPVHVRAEQPDEGRTVPTTRQHV---FRAHAL---DKMEVLARVLQAGGRG 330 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A+VF TR + + + LA+ F A+ G+L Q +R AL+ R G+ V +ATDVAA Sbjct: 331 LAMVFVRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVDVLVATDVAA 390 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ + V++ + + LHR GRTGRAG G+++ + Sbjct: 391 RGIDINGVTHVVNYQCPEDENVYLHRIGRTGRAGESGVAITFV 433 >gi|262376303|ref|ZP_06069533.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145] gi|262308904|gb|EEY90037.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145] Length = 383 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 196/346 (56%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPNLKKAIDALGFTTMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLISIMNDLLNN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + R+ P AL +APTRELA+Q+ + + L G+ V +GGV +++ L Sbjct: 69 PIQEQRYR--GEPRALILAPTRELALQIESDAQDLAKYAGLNVVTLLGGVDFDKQKNQLN 126 Query: 123 NG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 KAPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +VA +D+ + IL Sbjct: 187 RQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKADKYKLLQEIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R + ++F + R V + L ++VV LSGE++Q +R L ++G+ + I Sbjct: 247 RDEPIEKVMIFANRRDQVRKLYDHLKRDGYKVVMLSGEIAQDKRLKMLDQFKNGKHNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + V++ L ++ +HR GRTGRAG G+S+ Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTSGVSI 352 >gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2] Length = 449 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 193/363 (53%), Gaps = 16/363 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL G+ T +Q + P L+ +D+L +AQTG+GKT F L L L E + + A Sbjct: 14 KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 ++ AL + PTRELA QV + + AV GGVS++ + L+ G I+V TP Sbjct: 73 NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D R + + L+A+VLDEAD MLDLGF +++ + + P+KR+ L+FSAT S A Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I TLA+ +D + + ++ N + V V + ++L+ + A+VF Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWHQALVFAK 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR SV +L ++ G+ Q R ALQ + G + +ATDVAARG+D+ + Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357 + LV++ +L E+ +HR GRTGRAG G +V +I Q +QRR E Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372 Query: 358 RLF 360 F Sbjct: 373 PDF 375 >gi|134097656|ref|YP_001103317.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133910279|emb|CAM00392.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 496 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 121/350 (34%), Positives = 191/350 (54%), Gaps = 8/350 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL E G + ++QE L LR +D++ A+TG+GKT+ FG+ + L D Sbjct: 3 PEIV-RALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPGD 61 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + PTREL VQV R+L G+ GG ++ L++G + Sbjct: 62 -----GTPQALVVVPTRELCVQVARDLTDAGKHLGIRTLAVYGGRPYEQQIEALRSGVDL 116 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 V+GTPGRL D + L + ++A+VLDEADEMLDLGF DIE IL P++R+ ++FSA Sbjct: 117 VIGTPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSA 176 Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 T+ I TLA+ + Q +R A H D+ I ++ +G Sbjct: 177 TMPGPIITLARTFLRQPTHIRAEQADAGAIHERTKQFVYRAHAMDKTELIARAMQANGRG 236 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++F T+ + + + L E F A+ G+L Q R AL+ R G+ + +ATDVAA Sbjct: 237 LSMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVAA 296 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 RGID+ + V++ + + + +HR GRTGRAGR+G+++ ++ + + R Sbjct: 297 RGIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLVDWDEEPR 346 >gi|110834556|ref|YP_693415.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2] gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax borkumensis SK2] Length = 551 Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 219/387 (56%), Gaps = 21/387 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+V+ A++ +G+ + +Q + L D+L AQTG+GKT AF L L + Sbjct: 13 LPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLA------ 66 Query: 67 DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 R P+ P L +APTRELA+QV E +AK G+ V GG + + L+ Sbjct: 67 -RLDPSLREPQMLILAPTRELAIQVATACEE-FAKDIKGLQVLPIYGGGEYRTQLKGLRG 124 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA ++VGTPGR+ DH+ + +++LKA+VLDEADEML +GF DD++++L+ +P ++ Sbjct: 125 GAQVIVGTPGRVMDHMDRGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLA 184 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+ P I +A + K V I + + I R VA ++ +A+ IL Sbjct: 185 LFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEAE 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +VF T+ + + L + AL+G++ QQ+R +Q ++D R + IATD Sbjct: 245 EHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLLIATD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERL 359 V ARG+D+P + V++ ++ +PE +HR GRTGRAGR+G ++ + Q++ R+ ER+ Sbjct: 305 VVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLRQIERI 364 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI 386 R+ S+ PSV+ + +A+RI Sbjct: 365 TRQ---SIEKMALPSVDDL---NAKRI 385 >gi|330878076|gb|EGH12225.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 629 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|71736442|ref|YP_272752.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. phaseolicola 1448A] gi|298485028|ref|ZP_07003125.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71556995|gb|AAZ36206.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|298160438|gb|EFI01462.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 625 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct] gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct] Length = 455 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 109/345 (31%), Positives = 190/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TG GKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGPGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis DSM 9187] gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 489 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 120/337 (35%), Positives = 186/337 (55%), Gaps = 6/337 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72 A+ ++GY + +Q + L +DV+ +AQTG+GKT F L L L R +PA Sbjct: 15 AVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLLHRL----SRGNPAR 70 Query: 73 -SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +A AL + PTRELA QV + + V GGV+++ + ++ GA ++V T Sbjct: 71 SNAVRALVLTPTRELAAQVAESVTTYGKYLPLKSVVVFGGVNINPQMLAMRKGADVLVAT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + L+ L+ ++LDEAD MLD+GF DI I++ PK R+ LMFSAT S Sbjct: 131 PGRLLDLVSQNALHFRQLEVLILDEADRMLDMGFIRDIRKIINMLPKDRQTLMFSATFSD 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I TLAK + V++++A N I V + + ++++++ + +VF Sbjct: 191 EIRTLAKGLLNEPVQIDVAPRNTTAETIKQTICPVDKGRKPALLCHLIKHNNWQQVLVFM 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ ++ L Q A+ G SQ R+ AL +DG RV +ATD+AARGID+ Sbjct: 251 RTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVLVATDIAARGIDIA 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL + E+ +HR GRTGRAG +G ++ ++ Sbjct: 311 QLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLV 347 >gi|157962845|ref|YP_001502879.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847845|gb|ABV88344.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 414 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 121/352 (34%), Positives = 187/352 (53%), Gaps = 5/352 (1%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P + L+++GY T++Q + L +D++ SAQTG+GKT AF L L Sbjct: 5 FSSLPLGDKLQRVLAQKGYQQPTAIQAEAIPVILSGQDIMASAQTGTGKTAAFTLPLLQR 64 Query: 62 LLAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 LL + S P AL + PTRELAVQV + T + V GGVS+ + Sbjct: 65 LLDRSAEDCLTSRLPTALILVPTRELAVQVNGNVSQYAVNTDIASVVIYGGVSIDAQATK 124 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G I+V TPGRL DH+R LN+S + +V DEAD MLD+GF D+I IL P KR Sbjct: 125 LAAGCDIIVATPGRLLDHLRRGSLNLSSIDYLVFDEADRMLDMGFMDEISAILTRLPAKR 184 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239 + +FSAT S AI L+K R+ + N ++ + V SDR ++ +++ Sbjct: 185 QTSLFSATFSTAIYDLSKKLLHKPARIEVDKANSAADSVE-QIVYAVDSDRKTELICHLI 243 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + ++F + + + + + A G+L Q R L + G+ + + Sbjct: 244 KKYDWHQVLIFSRKKQTADTIAQKMLATGIETKAFHGDLGQGAREQVLNDFKQGKIKALV 303 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ATDVAARG+D+ +L+ V++ E+ E+ +HR GRTGRAG G +V + ++ Sbjct: 304 ATDVAARGLDIVELKYVVNYEIPFIAEDYIHRIGRTGRAGSVGKAVTLYSED 355 >gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca] Length = 383 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T +Q + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 2 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 61 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 62 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 115 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 116 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 175 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 176 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 235 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 236 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 295 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 296 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 340 >gi|256390879|ref|YP_003112443.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928] gi|256357105|gb|ACU70602.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM 44928] Length = 854 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 124/380 (32%), Positives = 203/380 (53%), Gaps = 9/380 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + + L+E G N +Q A + L + VL A+TGSGKT+AFGLA + L + Sbjct: 72 LPEELVKKLAENGVHNTFPIQAATIPDALAGRHVLGKARTGSGKTLAFGLAALANLKGKR 131 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R PLAL + PTRELA+QV L G +A GG ++++ L+ G Sbjct: 132 AR---KGKPLALVLVPTRELAMQVSDALTPYGFAVGADIAAVYGGAPMYKQVYSLRRGVE 188 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL D I ++S ++ +LDEAD+M D+GF + +L + + L+FS Sbjct: 189 LLVATPGRLTDLIEQGECDLSEVEIAILDEADQMADMGFMPIVTELLSQTDPTGQRLLFS 248 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH---- 242 AT+ A+ L + Y D V ++ +++ + +D+ ++V +D+ I H Sbjct: 249 ATLDGAVDELVRQYMTDPVLHSVTADSEDSAQMDHHLLIVEPADKSMVTAEIAARHTPGD 308 Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + I+F T+ R + + E +AL G ++Q+ R+ L ++GR V +AT Sbjct: 309 DDGRRTILFARTKLGADRIAEKIREAGVSALALHGGMTQRARTKTLADFKEGRVPVLVAT 368 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGI + ++LV+H + + +P++ LHR+GRT RAG G V ++ ++ RL Sbjct: 369 DVAARGIHVDGIDLVLHVDPAGDPKDYLHRAGRTARAGESGTVVTLVLPKQRKSTMRLLE 428 Query: 362 EANVSV-VWEPAPSVEAIRE 380 +A V + APS +RE Sbjct: 429 QAGVDAELTRVAPSSAELRE 448 >gi|124268102|ref|YP_001022106.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum PM1] gi|124260877|gb|ABM95871.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum PM1] Length = 516 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 37/392 (9%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AENDR 68 A+++ G+ TSVQE + L+ D +VS+QTGSGKT AF L + LL AE R Sbjct: 87 HAVTQLGFTAPTSVQEQAIPAALKGGDWMVSSQTGSGKTAAFLLPVLHRLLNAGAAEQTR 146 Query: 69 FSPASAPLALAIAPTRELAVQVGREL--------EWLYAKT----------GVVVAVCIG 110 + P A+ + PTRELA QV + E L A+ G+ +A +G Sbjct: 147 VA---TPRAVVLCPTRELAQQVSADAIDLMRGVGEALRAEAKQHPLRDAARGLRIATVVG 203 Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169 G+ ++ DL+ GA +VV TPGRL D H RG+ + + + +V+DEAD MLDLGF +D+ Sbjct: 204 GMPFGKQLFDLR-GAQLVVATPGRLLDLHSRGQ-IRLDATQVLVVDEADRMLDLGFAEDL 261 Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229 I D++ ++ + +MFSAT +P I LA + R+ +A+ + HSDI Sbjct: 262 AAIADATAQRDQTMMFSATFAPRIMALASKLMRSPGRLELATAHDVHSDITQTLHWADNM 321 Query: 230 DRDNAIV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 A++ + LR A+VF ST+ + L + VAL G + Q R+ LQ Sbjct: 322 GHKQALLEHWLRDAEVDQAVVFASTQVDTEAIAEALQQQGHSAVALHGAMPQAVRNRRLQ 381 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +RDG RV +ATDVAARG+D+P + VI+ L E+ +HR GRTGRAGR G ++ I Sbjct: 382 NVRDGHVRVLVATDVAARGLDVPSISHVINFGLPMKAEDYVHRIGRTGRAGRSGTAI-TI 440 Query: 349 PQNMQR---RAERLFR----EANVSVVWEPAP 373 ++ +R RA F EA+V V EP P Sbjct: 441 AEHRERGKIRAIEAFTRQPIEASVIVGLEPTP 472 >gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1] gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1] Length = 439 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 182/340 (53%), Gaps = 1/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + AL++ GY T +Q + L +D+L AQTG+GKT AF L + + L Sbjct: 8 NLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPILNKLSQI 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R +P +AP AL + PTRELA Q+G + V GGV + R L G Sbjct: 68 KGRPAP-NAPRALILTPTRELASQIGNSIAVYGKHVPTTHTVVFGGVGKQPQIRALSRGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + + + + ++ VLDEAD MLD+GF DI I+ P KR L+F Sbjct: 127 DILVATPGRLLDLMGERHVRLDQIQVFVLDEADRMLDMGFIHDIRRIIKVIPAKRHTLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA+ + +V + E+ I + + V ++ + + N+L + + Sbjct: 187 SATMPKDIAELAEGLLTNPAKVEVTPESTTVERITQKVLFVDKQNKRSLLKNVLEHESIE 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ +R + L +H A+ G SQ R AL R G+ +V +ATD+AA Sbjct: 247 QVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ + VI+ +L + E+ +HR GRT RAGR G ++ Sbjct: 307 RGIDVAGISHVINFDLPNESESYVHRIGRTARAGRDGNAI 346 >gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045] gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045] Length = 848 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 130/349 (37%), Positives = 188/349 (53%), Gaps = 16/349 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G +N +QE L L DV+ A+TG+GKT+ FGL L + D R Sbjct: 55 EALEAVGILNPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVSVPADVEAGR 114 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P + P AL + PTREL VQV +L V V GG + + L+ G Sbjct: 115 ARPEDVTNTPQALVVVPTRELCVQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALKKGV 174 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D K LN++H++ +VLDEADEMLDLGF D+E I+ P +R+ ++F Sbjct: 175 DVVVGTPGRLLDLAGQKKLNLAHVRCLVLDEADEMLDLGFLPDVEKIIGMLPARRQTMLF 234 Query: 186 SATISPAITTLAKNYQKDAVRVNIAS---ENRQHSDID---YRAVLVALSDRDNAIVNIL 239 SAT+ A+ +LA+ Y + S E ++I YRA + D+ I IL Sbjct: 235 SATMPGAVISLARRYMSQPTHIRATSPEGEGVTLANIKQFVYRAHSM---DKPEMIARIL 291 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G A++FC T+ + + + L + F A+ G+L Q R AL+ R+G+ V + Sbjct: 292 QAEGRGLAMIFCRTKRTAADIAEQLQQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 351 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ + VI+ + + + LHR+GRTGRAG G ++ + Sbjct: 352 CTDVAARGIDVEGVTHVINYQSPEDEKTYLHRTGRTGRAGASGTAITFV 400 >gi|302063416|ref|ZP_07254957.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato K40] Length = 629 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|116199007|ref|XP_001225315.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51] gi|118573324|sp|Q2GWJ5|FAL1_CHAGB RecName: Full=ATP-dependent RNA helicase FAL1 gi|88178938|gb|EAQ86406.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51] Length = 394 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 119/357 (33%), Positives = 195/357 (54%), Gaps = 15/357 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 46 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 99 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 100 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 159 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 160 IRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 219 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V D + + + ++ A++FC+TR V Sbjct: 220 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 279 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ G++ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 280 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 339 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP 373 + +L SN EN +HR GR+GR GRKG+++ FV +++ R+ R ++ +W P+P Sbjct: 340 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDV-----RILR--DIECMWLPSP 389 >gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1] gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1] Length = 508 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 194/368 (52%), Gaps = 8/368 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I A+ E GY + T +Q + L +DVL AQTG+GKT +F L + L R Sbjct: 38 EPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILQGSRAR 97 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P +L + PTRELA+QV + A+ IGG S+ ++ L G ++ Sbjct: 98 ---ARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEVLNRGVDVL 154 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D GL ++ K +V+DEAD MLD+GF DIE I+ R+ L FSAT Sbjct: 155 IATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPLRQTLFFSAT 214 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++P I LA + ++ + ++ + S I+ +V D+ A+ +LR +NAI Sbjct: 215 MAPEIRRLADAFLRNPKEITVSRPSSVASTIETGLAIVDAKDKRRALRKLLREADMQNAI 274 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+ + V K L +H F AL G+L+Q R + L+ + G ++ + +D+AARGI Sbjct: 275 VFCNRKRDVDVLCKSLIKHGFSAGALHGDLAQSVRFSTLEAFKSGELKILVCSDIAARGI 334 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ L V + +L + E+ +HR GRTGRAGR G + ++ E +A + Sbjct: 335 DIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAY-----SLATPDEEALAQAIEKLT 389 Query: 369 WEPAPSVE 376 +P P +E Sbjct: 390 GKPIPRIE 397 >gi|316971006|gb|EFV54849.1| eukaryotic initiation factor 4A [Trichinella spiralis] Length = 465 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 118/369 (31%), Positives = 195/369 (52%), Gaps = 15/369 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ + +Q+ + P + +DV+ AQ+G+GKT F + L + N F+ A L Sbjct: 104 GFEKPSVIQQLAIVPCCQRRDVIAQAQSGTGKTATFAIGLLQQI---NTDFNDCQA---L 157 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V CIGG SV R L G H+ VGTPGR+ D Sbjct: 158 VMAPTRELAQQIQKVILALGDHMGVKVLTCIGGTSVATNREKLGQGCHVAVGTPGRVLDM 217 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IRG L +K VLDEADEML GF+ I + + P ++++ SAT+ + + Sbjct: 218 IRGHHLQTKGIKTFVLDEADEMLSRGFKQQIHEVFEFMPADVQVVLLSATMPDEVLQVTT 277 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + + VR+ + E I + V + + + + +I A++FC++R V Sbjct: 278 KFMNNPVRILVRKEELTLDGIRQFYIEVGREEWKLDTLCDIYTTLSISKAVIFCNSRQKV 337 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + L + F V + G+++QQ+R +Q R G +RV I+TD+ ARGID+ + +VI Sbjct: 338 EKLARELTDRKFTVTCMHGDMTQQDRDVIMQQFRTGSSRVLISTDLLARGIDIQQVSIVI 397 Query: 318 HAELSSNPENLLHRS-------GRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + ++ N EN +HR GR+GR GR G+++ + +N +R + + + ++ Sbjct: 398 NYDIPHNRENYIHRYEQPAVFIGRSGRFGRVGVAINFVTENDKRMMKDIEEFYHTNIRQM 457 Query: 371 PAPSVEAIR 379 PA +E +R Sbjct: 458 PA-DIEKVR 465 >gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000] gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000] Length = 868 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 127/346 (36%), Positives = 183/346 (52%), Gaps = 10/346 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G + +QE L L DV+ A+TG+GKT+ FGL L + D R Sbjct: 53 EALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 112 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AP AL + PTREL QV +L V V GG + + L+ G Sbjct: 113 ARPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALKKGV 172 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D K LN+ H+KA+VLDEADEMLDLGF D+E I++ P KR+ ++F Sbjct: 173 DVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIINFLPVKRQTMLF 232 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYH 242 SAT+ A+ LA+ Y + + + + + + V + D+ + IL+ Sbjct: 233 SATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFVYRAHNMDKPEMVSRILQAD 292 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G +VFC T+ + + L + F A+ G+L Q R AL+ R+G+ V + TD Sbjct: 293 GRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 352 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI+ + + + LHR GRTGRAG KG ++ ++ Sbjct: 353 VAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGTAITLV 398 >gi|167628011|ref|YP_001678511.1| ATP-dependent RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598012|gb|ABZ88010.1| ATP-dependent RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 445 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 184/343 (53%), Gaps = 10/343 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL A+ Sbjct: 11 LICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQ 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G Sbjct: 71 ANRIK------TLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D L L VLDEAD MLD+GF +D++ I PKK + LMF Sbjct: 125 EILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT SP IT+LA + V+ N I + + S + NA++++++ Sbjct: 185 SATFSPEITSLANEFLDSPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKDQDLH 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AA Sbjct: 245 QVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVLVATDIAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ L VI+ +L + E+ +HR GRTGRAG+ G+++ ++ Sbjct: 305 RGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLV 347 >gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia MC0-3] Length = 514 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 140/400 (35%), Positives = 212/400 (53%), Gaps = 45/400 (11%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALAST 61 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L A Sbjct: 45 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 103 Query: 62 LLAENDRF--------------SPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 A+ R P + P L + PTRELA+QV G+ L+ L Sbjct: 104 TQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 163 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF +DIE I+ ++P+ R+ ++FSAT+ I +L +D R+ I + R S + Sbjct: 218 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLRDPERIEI--QQRLESRAN 275 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR AI+F +T+ + LA+ F+ AL G+ Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395 Query: 338 AGRKGMSVFVI---PQNMQRRAERLFRE---ANVSVVWEP 371 AGR G++V ++ Q +R ER R NV +EP Sbjct: 396 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 435 >gi|78186849|ref|YP_374892.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273] gi|78166751|gb|ABB23849.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273] Length = 418 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 184/340 (54%), Gaps = 1/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I + I AL E GY + T +Q + L+ D+L AQTG+GKT AF + + LL E Sbjct: 7 HIIEPILRALEEEGYTHPTPIQTEAIPLILKGSDLLGCAQTGTGKTAAFAIPILQ-LLRE 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +L + PTRELA+Q+G TG+ V GGV + + L+ G Sbjct: 66 RKAIDGKRKIRSLIVTPTRELAIQIGESFSAYGRHTGLTNTVIFGGVGQNPQVNALRRGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + L++ ++ +VLDEAD MLD+GF DI IL + PK+R+ L F Sbjct: 126 DILVATPGRLLDLMNQGILHLHDIEILVLDEADRMLDMGFIHDIRKILAAVPKERQSLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P I L+ + +V++ + I+ + V ++ +V++L+ + Sbjct: 186 SATMPPEIQRLSSTILRHPAKVSVTPVSSTVDIINQQIYFVDRGNKSGLLVHLLQNPDIR 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + + L +H A+ G +Q R AL + + RV +ATD+AA Sbjct: 246 TVLVFTRTKHGADKVVRHLEKHNITAEAIHGNKAQNARQRALSNFKSQKTRVLVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ DLE VI+ E+S+ E +HR GRTGRAG G ++ Sbjct: 306 RGIDVDDLEWVINYEMSNIAETYVHRIGRTGRAGSAGTAI 345 >gi|66043725|ref|YP_233566.1| helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63254432|gb|AAY35528.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 629 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|302186251|ref|ZP_07262924.1| helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae 642] Length = 629 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|300705099|ref|YP_003746702.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CFBP2957] gi|299072763|emb|CBJ44116.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CFBP2957] Length = 547 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 198/373 (53%), Gaps = 11/373 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71 A++E GY T +Q + L+ D+L AQTG+GKT F L L L A N +P Sbjct: 15 AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVHTP 74 Query: 72 ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AL + PTRELA QV + + V GGV ++ + L+ G IV Sbjct: 75 HGMRYPVRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N ++ R V + + ++R + + Sbjct: 195 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L +A+ G SQ R+ AL + G RV +ATD+AARGI Sbjct: 255 VFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL RE Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374 Query: 365 VSVV--WEPAPSV 375 +V+ +EP P++ Sbjct: 375 RTVLEGFEPDPTI 387 >gi|294626035|ref|ZP_06704645.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599705|gb|EFF43832.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 458 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 139/413 (33%), Positives = 212/413 (51%), Gaps = 16/413 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P L+ DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRRL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + +VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT +I LA+ K+ V + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDSIRALARELLKEPVEITVEGAD-SAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETT 351 Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407 RA+ L E + W AP A R + L +D + D+ + D+L Sbjct: 352 RAQALETEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403 >gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae] Length = 438 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 206/376 (54%), Gaps = 16/376 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A+ E GY TS+Q+ + L KD+L SAQTG+GKT F L + L ++ Sbjct: 18 ILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLPILQHL-SQTPVVV 76 Query: 71 PASAPL-ALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P+ AL +APTRELA QVG+ + ++L K+ VV GGVS++ + L+ G Sbjct: 77 KGKKPVRALILAPTRELAAQVGQNVRNYSQFLRLKSLVV----FGGVSINPQMMKLRGGV 132 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D ++ +++S ++ +VLDEAD MLD+GF DI ILD P KR+ L+F Sbjct: 133 DILVATPGRLLDLVQQNAVSLSQVEILVLDEADRMLDMGFIHDIRRILDKLPTKRQNLLF 192 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I LA + + + +A N + V + + ++ + Sbjct: 193 SATFSNQIKQLANSLLHNPTILEVAPRNSASQQVKQLIHFVDKRRKAELLSYLIGSENWQ 252 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ +R T+ L + + +A+ G SQ R+ AL + G RV +ATD+AA Sbjct: 253 QVLVFTRTKYGANRLTEHLIKDGIKAMAIHGNKSQGARTRALADFKSGAIRVLVATDIAA 312 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362 RG+D+ L V++ EL + E+ +HR GRTGRA G++V ++ Q++ ERL ++ Sbjct: 313 RGLDIEQLPYVVNYELPNVAEDYVHRIGRTGRAAATGLAVSLVAIDEQSLLTAIERLLKQ 372 Query: 363 ANVSVV---WEPAPSV 375 + + +EP P++ Sbjct: 373 SIPRMALAGYEPDPTI 388 >gi|330886235|gb|EGH20136.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. mori str. 301020] Length = 625 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVSRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 578 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 189/338 (55%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L KDV+ +AQTG+GKT F L L LL++ ++ + Sbjct: 12 IQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLSKGNK-A 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV +E + AV GGV ++ + + L++G ++V Sbjct: 70 KAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + K + + L+ +VLDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 130 TPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK V +++ N + + V + + ++ +++ + +VF Sbjct: 190 DEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQEDWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 250 SRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLV 347 >gi|330899330|gb|EGH30749.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 629 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|295704908|ref|YP_003597983.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] gi|294802567|gb|ADF39633.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] Length = 466 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 113/342 (33%), Positives = 196/342 (57%), Gaps = 9/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 I +A+ G+ T +Q + + KD++ AQTG+GKT AFG+ L + L+E Sbjct: 13 IEKAIHNLGFEEATPIQAEAIPIAMTGKDLIGQAQTGTGKTTAFGIPLIERVELSE---- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A + +APTRELA+QV EL + GV GG ++R+ + L+ HI+ Sbjct: 69 ---EAIQGIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQIKALKKRPHIIS 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ + + ++H++ VLDEADEML++GF +DI+ IL + L+FSAT+ Sbjct: 126 ATPGRLMDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQTILGGISSPHQTLLFSATM 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S + +LA+ + V + ++ +I+ + V + + + + + N++ AIV Sbjct: 186 SKQVQSLAQKFMNTPELVQVKAKQLTVKNIEQQYVEIPENRKFDVLCNLVDLQSPDLAIV 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V + L + + + G+L+Q +R++ ++ ++ + +ATDVAARG+D Sbjct: 246 FGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKEHTIEIMVATDVAARGLD 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 + + V + ++ +PE+ +HR GRTGRAG KG++V F+IP+ Sbjct: 306 ITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFIIPR 347 >gi|259418826|ref|ZP_05742743.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B] gi|259345048|gb|EEW56902.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B] Length = 442 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 120/349 (34%), Positives = 194/349 (55%), Gaps = 4/349 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P+ + + G+ T +Q + L +DVL AQTG+GKT AFG+ L + +L Sbjct: 8 DLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLVAQMLEY 67 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + PA+ + L +APTRELA Q+ L L + + + +GGVS++ + L G Sbjct: 68 GQK--PAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQINRLSRG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I+V TPGRL D + K L++ +VLDEAD+MLDLGF + I P+KR+ ++ Sbjct: 126 TDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEKRQTML 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ + +A Y K VR+ + + + + +A +++ + + +L H Sbjct: 186 FSATMPKQMNEIANAYLKSPVRIEVTPPGKPATKVTQSVHFIAKAEKLSLLKELLAKHDG 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VF T+ + + KVL + F+ A+ G SQ +R AL+ + G V +ATDVA Sbjct: 246 ERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVLVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ARG+D+PD++ V + EL + P+ +HR GRT RAG+ G +V F P + Sbjct: 306 ARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEI 354 >gi|237798154|ref|ZP_04586615.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021006|gb|EGI01063.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 629 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++F T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans 2-40] gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40] Length = 516 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 193/357 (54%), Gaps = 7/357 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDR 68 I +A+ E+GY T +Q + P L +DV+ +AQTG+GKT F L + L EN R Sbjct: 29 IQKAVLEQGYETPTPIQAQAIPPVLEGRDVMAAAQTGTGKTAGFTLPILEILAEGIENGR 88 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHI 127 + AL + PTRELA QVG + LY K + + GGV ++ + L+ G I Sbjct: 89 KVKPNQARALVLTPTRELAAQVGENVA-LYGKYLPIKSTIVFGGVKINPQMMKLRGGVDI 147 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + + L+ +VLDEAD MLD+GF DI I+ PKKR+ LMFSA Sbjct: 148 LVATPGRLMDLYNQRAVKFDQLEMLVLDEADRMLDMGFIHDIRKIMAILPKKRQNLMFSA 207 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LAK+ + V + + N + + V ++ + ++++ + + Sbjct: 208 TFSQDIRELAKSIVNNPVEITVNPPNSTATRVKQWICPVDKKEKPALLTHLIKTNKWQQV 267 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ ++ K L + A+ G SQ R+ AL ++G ++ +ATD+AARG Sbjct: 268 LVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTKALAEFKNGTVKILVATDIAARG 327 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361 +D+ L V++ +L E+ +HR GRTGRAG +G +V ++ + M + ERL + Sbjct: 328 LDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGNAVSLVSADEFQMLKEIERLTK 384 >gi|85058891|ref|YP_454593.1| ATP-dependent RNA helicase RhlE [Sodalis glossinidius str. 'morsitans'] gi|84779411|dbj|BAE74188.1| putative ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans'] Length = 453 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 205/374 (54%), Gaps = 13/374 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY+ T VQ+ + L+ +D++ SAQTG+GKT AF L + L + R +PA Sbjct: 15 ALAEKGYLEPTPVQQQAIPYVLQGRDIMASAQTGTGKTAAFTLPILQLL---DQRPAPAG 71 Query: 74 A---PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P+ AL + PTRELA Q+G + A G+ V GGVS++ + L+ G ++V Sbjct: 72 KQRRPIRALILTPTRELAAQIGENITEYSAHLGLRSLVVFGGVSINPQMMKLRGGVEVLV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + + +++S ++ +VLDEAD MLD+GF DI ++ P KR+ LMFSAT Sbjct: 132 ATPGRLLDLAQQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVMKLLPTKRQSLMFSATF 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I TLA + + V +A N I +V + + +++ + + +V Sbjct: 192 SDEIKTLANSLLDNPASVEVARRNTASEQITQFVHMVDKKRKRELLSDMIGRNNWQQVLV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + A+ G SQ R+ AL + G RV +ATD+AARG+D Sbjct: 252 FTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKQGSIRVLVATDIAARGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQ-NMQRRAERLFREANVS 366 + L V++ EL E+ +HR GRTGRA G +S+ + + + R ERL ++ Sbjct: 312 IDLLPHVVNYELPQVAEDYVHRIGRTGRAAATGEALSLVCVDELGLLRDIERLLKKPIPR 371 Query: 367 VV---WEPAPSVEA 377 +V ++P S++A Sbjct: 372 IVLPGYDPDSSIKA 385 >gi|149181312|ref|ZP_01859810.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. SG-1] gi|148851037|gb|EDL65189.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. SG-1] Length = 481 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/340 (32%), Positives = 190/340 (55%), Gaps = 6/340 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ + I AL+ Y T VQ ++ L +D++V AQTGSGKT AFG+ ++ + E Sbjct: 10 HVSEEIQRALAVLKYETPTEVQNKVIPSALENQDLVVKAQTGSGKTAAFGIPVSDMIEWE 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P AL + PTRELAVQV ++ + + G +++ +L+ Sbjct: 70 EKK------PQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQKT 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ DHI + L+++ +K +++DEADEML+ GF D++E I+ P R ++F Sbjct: 124 HVVVGTPGRVMDHIERETLDLNQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMVF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L Y + +++ I S I++ + V ++ + + +I Sbjct: 184 SATLPKDVENLCHKYMNNPLQIEIESTGVTADTIEHSLIEVREEEKISLLKDITVVENPD 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FC T+ +V L + + L G L Q++R + ++ + G R +ATDVAA Sbjct: 244 SCLIFCRTKENVDTVYSELEKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVATDVAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ ++ LVI+ ++ E+ +HR+GRTGRAG KG ++ Sbjct: 304 RGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAI 343 >gi|110833595|ref|YP_692454.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2] gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax borkumensis SK2] Length = 459 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/337 (35%), Positives = 181/337 (53%), Gaps = 6/337 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72 A++ERGY + +Q + L +DV+ +AQTG+GKT F L L L SPA Sbjct: 15 AVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLERLRTG----SPAR 70 Query: 73 -SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + AL + PTRELA QV + + V GGV ++ + + L+ G ++V T Sbjct: 71 NNQVRALVLTPTRELAAQVAESVATYGKNLPLTSTVVFGGVKINPQMQRLRGGCDVLVAT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + + HL+ ++LDEAD MLD+GF DI IL P KR+ LMFSAT S Sbjct: 131 PGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILAKLPPKRQNLMFSATFSS 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LAK D V V+I+ N + V + + ++++ +G +VF Sbjct: 191 EIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPVDKKRKPALLTHLIQENGWFQVLVFS 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ ++ K L + + A+ G SQ R+ AL + G+ R +ATD+AARG+D+ Sbjct: 251 RTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKSGKVRALVATDIAARGLDIE 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G ++ ++ Sbjct: 311 QLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLV 347 >gi|312129179|ref|YP_003996519.1| dead/deah box helicase domain protein [Leadbetterella byssophila DSM 17132] gi|311905725|gb|ADQ16166.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila DSM 17132] Length = 373 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 183/342 (53%), Gaps = 7/342 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +AL E GY +LT +QE + L+ +D+L AQTG+GKT AF + + +L Sbjct: 7 NLSAPLAQALQEYGYTSLTPIQEQAIPKVLQGQDLLGCAQTGTGKTAAFAIPILERILQN 66 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +N R L + PTRELA+Q+G + + AV GGV+ +++ L+ Sbjct: 67 PKNKR-----QIRVLILTPTRELAIQIGDNFKAYSKHIKISHAVIFGGVNQNKQVNQLKQ 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I++ TPGRL D + + ++ L +VLDEAD MLD+GF D++ IL P +R+ L Sbjct: 122 GVEILIATPGRLLDLMSQGFVRLNGLDTLVLDEADRMLDMGFVHDVKKILTKIPTERQTL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 FSAT+ +I A + + V + + + V ++ ++NIL+ Sbjct: 182 FFSATMPQSIRKFAASILTNPAYVEVTPVSSTAETVKQGVYFVDKKEKTPLLINILKDQS 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F T+ + K L + A+ G SQ R AL+ + R V IATD+ Sbjct: 242 TDRTLIFTRTKHGADKLVKQLGKVGIPAAAIHGNKSQNARQRALEDFKSSRLNVLIATDI 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+ +L VI+ EL + PE +HR GRTGRAG +G++V Sbjct: 302 AARGIDIEELPYVINYELPNVPETYVHRIGRTGRAGAEGVAV 343 >gi|253572829|ref|ZP_04850228.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14] gi|251837561|gb|EES65653.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14] Length = 374 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/350 (34%), Positives = 192/350 (54%), Gaps = 1/350 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY T +QE + L +KD+L AQTG+GKT +F + + L Sbjct: 7 NITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPIIQHL-HL 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N S AL + PTRELA+Q+ +E T + V GGV+ + L G Sbjct: 66 NKGEGKRSGIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLHKGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + + + +++ VLDEAD MLD+GF DI+ IL PK+++ L F Sbjct: 126 DILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L + K+ +++ + ++ I V ++ +++IL+ + Sbjct: 186 SATMPDTIIALTNSLLKNPLKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQKSEDR 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++F T+ + + K+L + A+ G SQ R +AL + G+ RV +ATD+A+ Sbjct: 246 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 RGID+ +L LVI+ +L PE +HR GRTGRAG GM++ Q +++ Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQ 355 >gi|255034351|ref|YP_003084972.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254947107|gb|ACT91807.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM 18053] Length = 411 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/344 (33%), Positives = 186/344 (54%), Gaps = 3/344 (0%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F++ P I +L G+ T +Q + ++ +DVL AQTG+GKT AF + + Sbjct: 3 FDDYPIAAEIKRSLEAAGFKKPTDIQFKAIPAVMKGEDVLAIAQTGTGKTAAFAIPVIDK 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + S + + + PTRELA+Q+ + T V GGV + L Sbjct: 63 LHKQKSS-SRSEGIKCVVMVPTRELAIQIAEVFSSISRYTKVKTFSVFGGVEQGPQIAKL 121 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I+V TPGR+ D + + + + ++LDEAD MLDLGF DI+ ++ PK+R+ Sbjct: 122 EKGIDILVSTPGRMFDLVSQGHIRLDRVDTLILDEADHMLDLGFIKDIQDLIRHLPKRRQ 181 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSATI I LA + ++A+R+ I+ +N +ID+ VA+ D+ + ++R Sbjct: 182 TLFFSATIDEKIKKLAYSLVRNAIRIQISPKNPVAKNIDHSVAFVAMDDKRFFLERVIRQ 241 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + K +VF T+ R L + + + G+ Q +R A+ + G ++ IAT Sbjct: 242 NADKKILVFVRTKVRAERVFNALERMEIKSLTIHGDKQQSDRLTAMNEFKKGNVKILIAT 301 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DV+ARGID+P+++ VI+ +L PE+ +HR GRTGR +KG++V Sbjct: 302 DVSARGIDIPNVDYVINYDLPEQPESYVHRVGRTGRGMQKGIAV 345 >gi|187479813|ref|YP_787838.1| ATP-dependent RNA helicase [Bordetella avium 197N] gi|115424400|emb|CAJ50953.1| putative ATP-dependent RNA helicase [Bordetella avium 197N] Length = 477 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 192/374 (51%), Gaps = 14/374 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T +Q + LR D+L +AQTG+GKT F L + L A Sbjct: 19 AIAETGYTAPTPIQAQAIPQVLRGGDLLAAAQTGTGKTAGFTLPILHMLSQNKPAKRSAG 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTREL QV ++ TG+ V GGV+++ + L+ I+V TPG Sbjct: 79 RPRCLILTPTRELTAQVAESVQVYGKHTGLTSMVMFGGVNINPQISALRKPVDILVATPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI +L PK R+ L+FSAT S I Sbjct: 139 RLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKSRQNLLFSATFSDEI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + V++ N + LV + + + + +++ G +VF T Sbjct: 199 RELARGVLHNPGEVSVTPRNTATELVTQTVYLVDQAHKRDLVSHLISESGWHQVLVFTRT 258 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + A+ G SQ R+ AL +DG V +ATD+AARG+D+ L Sbjct: 259 KHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALAGFKDGSVAVLVATDIAARGLDIDQL 318 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA------- 363 V++ EL + PE+ +HR GRTGRAG G +V ++ + + + ERL ++ Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDSSEIKLLKAIERLIKKTIDRKTVD 378 Query: 364 ----NVSVVWEPAP 373 V V EP P Sbjct: 379 GWTPPVGAVAEPEP 392 >gi|83746106|ref|ZP_00943161.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551] gi|83727289|gb|EAP74412.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551] Length = 603 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 198/373 (53%), Gaps = 11/373 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71 A++E GY T +Q + L+ D+L AQTG+GKT F L L L A N +P Sbjct: 73 AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVHTP 132 Query: 72 ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AL + PTRELA QV + + V GGV ++ + L+ G IV Sbjct: 133 HGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 192 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT Sbjct: 193 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 252 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N ++ R V + + ++R + + Sbjct: 253 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 312 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L +A+ G SQ R+ AL + G RV +ATD+AARGI Sbjct: 313 VFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 372 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL RE Sbjct: 373 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 432 Query: 365 VSVV--WEPAPSV 375 +V+ +EP P++ Sbjct: 433 RTVLEGFEPDPTI 445 >gi|99080768|ref|YP_612922.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040] gi|99037048|gb|ABF63660.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040] Length = 445 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 192/348 (55%), Gaps = 2/348 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P+ + + G+ T +Q + L +DVL AQTG+GKT AFG+ L + +L E Sbjct: 8 DLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLVAQML-E 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R A L +APTRELA Q+ L L + + + +GGVS++ + L G Sbjct: 67 YGRKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQIHRLSKGT 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + K L++ +VLDEAD+MLDLGF + I P++R+ ++F Sbjct: 127 DILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEERQTMLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + +A Y K VR+ + + + + +A +++ + + +L H + Sbjct: 187 SATMPKQMNEIANAYLKSPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLSAHDGE 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + + KVL + F+ A+ G SQ +R AL+ + G V +ATDVAA Sbjct: 247 RTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVLVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 RG+D+PD++ V + EL + P+ +HR GRT RAG+ G +V F P + Sbjct: 307 RGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEI 354 >gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25] gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25] Length = 522 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 184/339 (54%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L N Sbjct: 12 ILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SNGSRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ AL + PTRELA QV +E ++Y + + AV GGV ++ + + L+ GA ++V Sbjct: 70 RANQVRALILTPTRELAAQV-QENVFMYGRHLPLSSAVVFGGVKINPQMQRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V +++ N ++ + + +V +++ K +V Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L E A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|213158663|ref|YP_002319961.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057] gi|213057823|gb|ACJ42725.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057] Length = 383 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 117/346 (33%), Positives = 198/346 (57%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + RF P AL +APTRELA+Q+ + + L + + + +GGV ++++ L Sbjct: 69 PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 126 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT + + LA+ + + V V I E + ++D++ R +VA D+ + +IL Sbjct: 187 RQTLMFSATFTYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L + ++V LSGE++Q +R L+ + G+ + I Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + V++ L ++ +HR GRTGRAG +G+S+ Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSI 352 >gi|291453994|ref|ZP_06593384.1| ATP-dependent RNA helicase [Streptomyces albus J1074] gi|291356943|gb|EFE83845.1| ATP-dependent RNA helicase [Streptomyces albus J1074] Length = 469 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/346 (37%), Positives = 186/346 (53%), Gaps = 10/346 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G N +QE L L DV+ A+TG+GKT+ FGL L + D R Sbjct: 15 EALEAVGITNPFPIQELTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVAADVEAGR 74 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P +AP AL + PTREL QV +L V V GG + + L G Sbjct: 75 AKPEQLTTAPQALVVVPTRELCQQVTNDLLTAGKVRDVRVLAIYGGRAYEPQVEALNKGV 134 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++VGTPGRL D + L++ H+KA+VLDEADEMLDLGF D+E I+ P KR+ ++F Sbjct: 135 DVIVGTPGRLLDLAGQRKLDLGHVKALVLDEADEMLDLGFLPDVERIVTMLPAKRQTMLF 194 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA--VLVALS-DRDNAIVNILRYH 242 SAT+ A+ LA+ Y + S + + + + A V A S D+ + IL+ Sbjct: 195 SATMPGAVIGLARRYMTQPTHIRATSPDDEGATVANIAQHVFRAHSMDKPELVSRILQAE 254 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G A++FC T+ + + + L F A+ G+L Q R AL+ R+G+ V + TD Sbjct: 255 GRGLAMIFCRTKRTAADIAEQLQRRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 314 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI+ + + + LHR GRTGRAGR G+++ ++ Sbjct: 315 VAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRAGIAITLV 360 >gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256] gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256] Length = 457 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 185/342 (54%), Gaps = 5/342 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ + L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ K+ + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKNPEIIEVERVDNQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347 >gi|229593097|ref|YP_002875216.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] gi|229364963|emb|CAY53082.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] Length = 628 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 135/392 (34%), Positives = 214/392 (54%), Gaps = 17/392 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V PGRL D +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FSA Sbjct: 133 LVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSA 192 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S IT LA + R+ + N I+ R +A S + + +++ + Sbjct: 193 TFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITAGAWEQV 252 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AARG Sbjct: 253 LVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVRILVATDIAARG 312 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE-- 362 +D+ L V++ EL + E+ +HR GRTGRAGR G ++ V P + + + ER+ ++ Sbjct: 313 LDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKI 372 Query: 363 ANVSVVWEPAPSVEA----IRERDAQRILQDP 390 A+ ++ A +VEA +RER R ++P Sbjct: 373 ADGDLMGFDASAVEAEKPEVRERPDVRNPRNP 404 >gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio] gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio] Length = 512 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + +V+ EA + G+ T +Q + L+ +DV+ A+TGSGKT AF + + +LLA Sbjct: 86 VTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACA 145 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R L + PTRELA Q+ + + L + GV AV +GG+ + + L H Sbjct: 146 QRLH------TLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPH 199 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ RR +F Sbjct: 200 VVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLF 259 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + +D V+ +++S+ + + + +D +V+IL Sbjct: 260 SATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGN 319 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VFC T + R +L + L G++SQ +R AL + V +ATDVA+ Sbjct: 320 SFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVAS 379 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P ++ VI+ ++ ++ ++ +HR GRT RAGR G S+ + Q Sbjct: 380 RGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 424 >gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus denitrificans K601] gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans K601] Length = 568 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 183/339 (53%), Gaps = 4/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRF 69 +A+ E+GY N T +Q + L D+L AQTG+GKT AF L + L A RF Sbjct: 14 QAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRLAQGQAPTSRF 73 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA QV + + V GGV ++ + ++ G ++V Sbjct: 74 G-GRGVRALVLTPTRELAAQVEESVRAYGKHLDIKSTVIFGGVGMNPQIERIKRGVDVLV 132 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + +++S ++ +VLDEAD MLD+GF D++ +L PK ++ L+FSAT Sbjct: 133 ATPGRLLDLQQQGFMDLSQVEILVLDEADRMLDMGFIHDVKKVLALLPKAKQSLLFSATF 192 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA D + + N I V + +++I++ H +V Sbjct: 193 SDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQQHDWSQVLV 252 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L +H Q +AL G SQ R+ AL+ + G+ R +ATD+AARGID Sbjct: 253 FTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQIRALVATDIAARGID 312 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + DL V++ E+ + PE+ +HR GRTGRAG++G +V ++ Sbjct: 313 IDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLV 351 >gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] Length = 526 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 185/339 (54%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L N Sbjct: 12 ILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 ++ AL + PTRELA QV +E ++Y++ + AV GGV ++ + L+ GA ++V Sbjct: 70 RSNQVRALVLTPTRELAAQV-QENVFMYSRHLPLTSAVVFGGVKINPQMLRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI ILD PK+R+ L+FSAT Sbjct: 129 ATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V +++ N ++ + + +V +++ K +V Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L + A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 522 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 185/339 (54%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L N Sbjct: 12 ILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ AL + PTRELA QV +E ++Y++ + AV GGV ++ + + L+ GA ++V Sbjct: 70 RANQVRALILTPTRELAAQV-QENVFMYSRHLPLNSAVVFGGVKINPQMQRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V +++ N ++ + + +V +++ K +V Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L E A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|261253372|ref|ZP_05945945.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891] gi|260936763|gb|EEX92752.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891] Length = 488 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 178/338 (52%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +QE + L KDV+ +AQTG+GKT F L + L +N + Sbjct: 12 ILKAIEEQGYDTPSPIQEQAIPAVLSGKDVMAAAQTGTGKTAGFTLPILERL--DNGQRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + AL + PTRELA QV + + V GGV V+ + L+ G ++V Sbjct: 70 KGNHIRALILTPTRELAAQVQENVFKYSRHQSLTSQVVFGGVKVNPQMLKLRKGCDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + L+ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT S Sbjct: 130 TPGRLLDLYQQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILNVLPAKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK D V V++ EN I+ + +V +++ K +VF Sbjct: 190 AEIRELAKGLVNDPVEVSVNKENSTAVTIEQSIYPADKRKKAPMLVKLIKDGNWKQTLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ +R L + + G SQ R+ AL + G RV +ATD+AARGID+ Sbjct: 250 CRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVRVLVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNYELPHVSEDYVHRIGRTGRAGEVGRAISLV 347 >gi|254775428|ref|ZP_05216944.1| ATP-dependent RNA helicase [Mycobacterium avium subsp. avium ATCC 25291] Length = 362 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 187/356 (52%), Gaps = 4/356 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P I +AL+ RG + +Q L L +DVL +TGSGKT+AF + L L Sbjct: 11 GVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVGRLSTG 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N R PA P L +APTRELA Q+ LE L A G+ V+ GGVS HR+ L+ G Sbjct: 71 NRR--PAR-PTGLVLAPTRELATQITATLEPLAAAAGLRVSTIFGGVSQHRQVTALKAGV 127 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL D +R + + + ++ V+DEAD M DLGF + IL ++P + L+F Sbjct: 128 DIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRLLF 187 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + +DAV ++ N S++ + V + +V+ L G Sbjct: 188 SATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHVFHVDSAQAKKELVHRL-ASGTG 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + + L E V L G LSQ R L M G ARV +ATD+AA Sbjct: 247 RRILFLRTKHQARKLARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 RG+ + ++ELV+H + S ++ LHRSGRT RAG G V V+ + L R Sbjct: 307 RGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRALMR 362 >gi|326430178|gb|EGD75748.1| eIF-4a [Salpingoeca sp. ATCC 50818] Length = 409 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 185/342 (54%), Gaps = 7/342 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + +DV+ AQ+G+GKT F +++ L D P AL Sbjct: 55 GFERPSAIQQRAIVPCTKGRDVIAQAQSGTGKTATFSVSV----LQRIDTTRPECQ--AL 108 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q LE L V CIGG V + L+ G ++VGTPGR+ Sbjct: 109 ILAPTRELATQSLDVLENLGQYMDVKTMGCIGGTRVQDDMAKLEQGVQVIVGTPGRVFHM 168 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I L++S+L VLDEADEML GF D I I + PK ++++ SAT+ + + K Sbjct: 169 INSGALDVSNLGVFVLDEADEMLSFGFTDQIYDIFQTLPKDVQVILISATMPDDVLEVTK 228 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + +D +R+ + E I V V D + + +I + A++FC+TR V Sbjct: 229 RFMRDPIRILVKKEQLTLEGIRQFYVDVGKEDWKLETLSDIWKTITISQAVIFCNTRRKV 288 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ L QV G+++Q ER+ ++ R G RV I TD+ ARGID+ + LVI Sbjct: 289 DWLTEQLRARGHQVSCTHGDMTQDERNMIMKEFRAGSTRVLITTDLLARGIDVQQVSLVI 348 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 + +L SN EN LHR GR+GR GRKG+++ + ++ RR + L Sbjct: 349 NFDLPSNRENYLHRIGRSGRFGRKGVAINFVAEDDVRRLKEL 390 >gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 539 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/332 (36%), Positives = 181/332 (54%), Gaps = 3/332 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E GY + T +Q + L +DVL AQTG+GKT +F L + L R Sbjct: 59 IQQAIEEMGYRHPTPIQAQAIPYILMGRDVLGVAQTGTGKTASFTLPMLEILSGSRAR-- 116 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P +L + PTRELA+QV + A+ IGG S+ ++ L G +++ Sbjct: 117 -ARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEALNRGVDVLIA 175 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D GL ++ K +V+DEAD MLD+GF DIE I+ R+ L FSAT++ Sbjct: 176 TPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPIRQTLFFSATMA 235 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA + + + ++ + S I+ V+V D+ A+ +LR +NAI+F Sbjct: 236 PEIRRLADMFLHNPKEITVSRPSSVASTIETGLVIVEEDDKRRALRKLLRESDMQNAIIF 295 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V K L +H F AL G+L Q R + L+ + G ++ + +D+AARGID+ Sbjct: 296 CNRKRDVDVLCKSLLKHGFSAGALHGDLPQSLRFSTLEAFKSGELKILVCSDIAARGIDI 355 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 L V + +L + E+ +HR GRTGRAGR G Sbjct: 356 GGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTG 387 >gi|332767614|gb|EGJ97807.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella flexneri 2930-71] Length = 430 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 198/365 (54%), Gaps = 14/365 (3%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ A L L KDV V A+TGSGKT AFGL L + A + AL + P Sbjct: 1 MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54 Query: 83 TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 TRELA QV EL L + ++ +C GG +R LQ+ HI+V TPGRL DH++ Sbjct: 55 TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 +++ L +V+DEAD MLD+GF D I+ ++ +P R+ L+FSAT AI ++ Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260 Q+D + + I S + I+ + + + + +L H + +VFC+T+ Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 232 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 L E ++L G+L Q R L +G ARV +ATDVAARG+D+ LELV++ E Sbjct: 233 CDALNEVEQSALSLHGDLEQ--RDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 290 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 L+ +PE +HR GRT RAG G+++ F P+ Q RA + + + W+ P+ +I Sbjct: 291 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIV 349 Query: 380 ERDAQ 384 +A+ Sbjct: 350 TLEAE 354 >gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1003] gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003] Length = 517 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 182/337 (54%), Gaps = 2/337 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSP 71 A+ E GY T +Q + L D+L AQTG+GKT F L + L + S Sbjct: 15 AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLHSMPPVAAASG 74 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGV ++ + L++G IVV T Sbjct: 75 KRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKSGVDIVVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++SHL+ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 135 PGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA N + +A N + + V + + ++++ H +VF Sbjct: 195 EIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLVFT 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L++ +A+ G SQ R+ AL +DG +V +ATD+AARGID+ Sbjct: 255 RTKHGANRLAEQLSKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGIDID 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 315 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 351 >gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] Length = 415 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 197/369 (53%), Gaps = 10/369 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A + G+ T VQ A + LR DVL SAQTGSGKT AF L L L A+ Sbjct: 14 QAATAMGFSAPTPVQSAAIPAVLRGADVLGSAQTGSGKTAAFALPLLQRLQADAQ----- 68 Query: 73 SAPL---ALAIAPTRELAVQVGRELEWLY--AKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 +AP AL + PTRELA QVG + L V VAV GGVS++ + L+ GA + Sbjct: 69 NAPRHVRALILVPTRELAAQVGEVIRSLGRGLPQPVKVAVVFGGVSINPQMMGLRGGADV 128 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGRL D + L + ++ +VLDEAD +LDLGF ++++ IL P +R+ L+FSA Sbjct: 129 VVATPGRLLDLVEHNALRLGSVEHLVLDEADRLLDLGFAEELQRILQLLPVRRQNLLFSA 188 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T +PA+ LA+ + VRV + I RA V R + ++++ H Sbjct: 189 TFAPAVQALAEGMLHEPVRVTVDDAPANVPAIAQRAFAVDAQRRTQLLRHLVQEHQWSRV 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF +T+ + + L + G LSQ R+ LQ +D R +V + TD+AARG Sbjct: 249 MVFVATQYAAEHVAEKLYKAGIFATPFHGGLSQGARTQVLQEFKDDRWQVVVTTDLAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 ID+ L V++ +L + ++ +HR GRTGRAG G++V + + + + ++S+ Sbjct: 309 IDIAQLPAVVNYDLPRSADDYVHRIGRTGRAGESGVAVSFVSAATEAHFRLIEKRQHLSL 368 Query: 368 VWEPAPSVE 376 E P E Sbjct: 369 PREVVPGFE 377 >gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 557 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 183/345 (53%), Gaps = 7/345 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69 I EAL+ +G + +Q L L +D++ A+TG+GKT+ FG+ L L + Sbjct: 77 ICEALAAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGW 136 Query: 70 --SPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 PAS +P L I PTRELA QV EL AK V + GG + + DL+ GA Sbjct: 137 DEDPASGSPQGLVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIEDLERGAE 196 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + L+++H+ VVLDEADEMLDLGF D+E IL + R ++FS Sbjct: 197 VVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKILARTRADRHTMLFS 256 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHG 243 AT+ A+ TLA+ Y + + + +V + N + IL+ G Sbjct: 257 ATMPGAVVTLARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEVVARILQAEG 316 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + +R L F AL G+L Q R AL+ R+ + V +ATDV Sbjct: 317 RGRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRNDKVDVLVATDV 376 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ D+ VI+ + + + +HR GRTGRAG G +V + Sbjct: 377 AARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFV 421 >gi|223983404|ref|ZP_03633590.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM 12042] gi|223964576|gb|EEF68902.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM 12042] Length = 474 Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/353 (33%), Positives = 192/353 (54%), Gaps = 6/353 (1%) Query: 3 IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 +F+ + + +A+ Y T VQE ++ L +D LV A+TGSGKT A+ L + Sbjct: 6 VFDLLEADLRQAVEALHYTQPTPVQEQVIPAFLEGRDCLVQAKTGSGKTAAYALPVCQQC 65 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E DR P AL +APTRELA Q+ +E++ + A +G + ++ L+ Sbjct: 66 HFE-DRL-----PQALILAPTRELADQITQEIQNFSLFRRLTCARLVGRQPMKSQKYQLK 119 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 IV+GTPGR+ DHI L++S LK +VLDEAD+M LG + + IL+ P + Sbjct: 120 QRVQIVIGTPGRVWDHIEQGTLDLSQLKMIVLDEADQMFSLGLTETVHQILEQLPSPIQT 179 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT+SP I LA+ D + + I S + + +I ++ V+ +++ ++++ Sbjct: 180 CLFSATLSPEILQLAEITVHDPLTIQIDSPCQTNQNIRLTSLTVSNTEKLTGLLHVFSTI 239 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A +AIVFC + + + L + AL G + Q +R L+ R G+ R+ ATD Sbjct: 240 QAPSAIVFCDRQMTAEEVAEQLKKRGLCADALHGGMEQDQRFAVLKQFRQGQLRILCATD 299 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 VAARG+D+ L L++H +L N E+ +HR GR GR + G SV ++ + + R Sbjct: 300 VAARGLDIDGLSLIVHWDLPLNLESFIHRCGRCGRIDQLGTSVALLTPSQKSR 352 >gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni] gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni] Length = 507 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/356 (31%), Positives = 200/356 (56%), Gaps = 10/356 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + +A E + + +Q+ + L+ KDV+ A+TGSGKT AF L + LL R Sbjct: 64 ETLCQACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILQALLENPQR 123 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + AL + PTRELA Q+G + E L + G+ V +GG+ + + L HI+ Sbjct: 124 Y------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHII 177 Query: 129 VGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 + TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +FSA Sbjct: 178 IATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSA 237 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T++ + L + KD V+V ++++ + + + + + +D +V+IL + Sbjct: 238 TMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSF 297 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++FCST + + +L + L G++SQ +R AL + + I+TDVA+RG Sbjct: 298 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 357 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 +D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E L Sbjct: 358 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMVSQYDIELYQRIEHLL 413 >gi|94500946|ref|ZP_01307471.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65] gi|94426886|gb|EAT11869.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65] Length = 466 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 183/334 (54%), Gaps = 13/334 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L + GY + +Q L + KDV+ A+TGSGKT AF L L L + R Sbjct: 21 QNLEDLGYQQMRPIQAQSLPAIIEGKDVIGQAKTGSGKTAAFALGLLHHLDVKRFRVQ-- 78 Query: 73 SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 L + PTRELA QV +E+ L A + V GG+ + L++GAHIVVGT Sbjct: 79 ----HLVLCPTRELADQVAKEIRQLARAIHNIKVLTLCGGMPFGPQVGSLEHGAHIVVGT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ +HIR L + + VLDEAD MLD+GF+D +E I+++ PK+R+ L+FSAT Sbjct: 135 PGRIEEHIRKNNLPLKDITGFVLDEADRMLDMGFQDSLESIVNALPKQRQTLLFSATYPE 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAI 248 I LA VRV + E+ HS I + + L D R A+ +L+ +++I Sbjct: 195 NIEKLAAWVTNKPVRVEV-QESDVHSQI--KQLFYRLQDNKQRMTALSLLLKKEKPESSI 251 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+T+ L F VAL G+L Q++R L + A + +ATDVAARG+ Sbjct: 252 VFCNTKREAQEIADELRSQGFSAVALHGDLEQRQRDQTLVRFANKSASIMVATDVAARGL 311 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 D+ ++ V + L+ +PE +HR GRTGR +KG Sbjct: 312 DIESVDAVFNYHLARDPEVHVHRVGRTGRGDKKG 345 >gi|150016695|ref|YP_001308949.1| DEAD/DEAH box helicase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149903160|gb|ABR33993.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 480 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 178/328 (54%), Gaps = 8/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77 GY N + VQE ++ L KD++V +QTGSGKT AFG+ L + EN P Sbjct: 22 GYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIPLCEKVDWNEN-------IPQI 74 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L + PTRELAVQV ++ + + G + + R L+ H+VVGTPGR+ D Sbjct: 75 LVLTPTRELAVQVSEDITNIGRFKRIKSVSIFGKEPISEQERKLKQKTHVVVGTPGRILD 134 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HI LN++ +K V+DEADEML++GF +E I+ PKK+ ++FSATI I L Sbjct: 135 HIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTMLFSATIPEEIKVLC 194 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 Y V ++I ++ + +ID+ ++ + +IL + ++F T+ +V Sbjct: 195 DKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITEKPETVVIFAKTKENV 254 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + L + V + G + Q+ER + + R G R+ ++TD+A+RGID+ + VI Sbjct: 255 DTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTDLASRGIDVKGITHVI 314 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L E +HR GRTGRAG KG ++ Sbjct: 315 NYDLPVEKEAYVHRIGRTGRAGEKGKAI 342 >gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] Length = 426 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 124/352 (35%), Positives = 192/352 (54%), Gaps = 6/352 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++++GY T +Q + L D+L +AQTG+GKT F L + L + S Sbjct: 16 AVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQRL--SDTPVSSGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QVG + + A+ GGV ++ + L+ G I+V TP Sbjct: 74 RPVRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQISMLRKGVDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K +++S ++ ++LDEAD MLD+GF DI +L PKKR+ L+FSAT S Sbjct: 134 GRLLDHVSQKTVDLSKVEILILDEADRMLDMGFIRDIRKVLALLPKKRQNLLFSATFSDD 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + +A N ++ L+ S + + +++ + +VF Sbjct: 194 IKRLADSLLNTPTLIEVARRNTASEQVEQSVHLIEKSRKRELLSHMIGSQNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L + + A+ G +Q R+ AL + GRARV +ATD+AARG+D+ Sbjct: 254 TKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRARVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR 361 L V++ EL PE+ +HR GRTGRAGR G +V ++ + R ERL + Sbjct: 314 LPNVVNYELPDVPEDYVHRIGRTGRAGRDGKAVSLVCSEEKKQLRDIERLLK 365 >gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans ORS 2060] Length = 506 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 190/358 (53%), Gaps = 8/358 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RF 69 I +AL+E GYV T +Q + P + +D+ AQTG+GKT AF L + L +E + Sbjct: 13 IMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPILHRLASETPAKR 72 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 +P L ++PTRELA Q+ V GGV++ R+ R L NG ++V Sbjct: 73 APRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQERALANGIDVLV 132 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + + L++ ++ +VLDEAD+MLDLGF ++ I+ PK R+ L FSAT+ Sbjct: 133 ATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLPKARQSLFFSATM 192 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I TLA Y +D V+V + ++ R + V+ + + ILR +V Sbjct: 193 PKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLGTILRDESIDRVLV 252 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ R + L + A+ G SQ +R AL R G RV +ATD+AARGID Sbjct: 253 FTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRVLVATDIAARGID 312 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFRE 362 + + V++ +L + PE +HR GRT RAG G+++ N + RA ERL R+ Sbjct: 313 VEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFC--NEEERAYLRDIERLTRQ 368 >gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta ATCC 11568] gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta ATCC 11568] Length = 490 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 185/340 (54%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ GY T +QE + L +DVL AQTG+GKT AF L + L + R A Sbjct: 15 QAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPMVDRLASGRAR---A 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ +APTRELA QV T + + IGGVS+ + L G +++ TP Sbjct: 72 RMPRAVVLAPTRELADQVAESFAKYAKGTRLNWVLLIGGVSMGDQIAALNKGVDVLIATP 131 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL D RGK L ++ ++ +V+DEAD MLD+GF DIE I +P +R+ L FSAT+ P Sbjct: 132 GRLLDLFDRGKML-LTGVELMVVDEADRMLDMGFIPDIERIFKLTPPRRQTLFFSATMPP 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAI 248 IT L + + KD R+ +A I + SD + A+ ++ +N I Sbjct: 191 EITRLTQQFLKDPTRIEVARPATTADTITQHITRLPSSDPKAKRTALRALVERGDVQNGI 250 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+ ++ V K L H F + G+L Q R L R G ++ +A+DVAARG+ Sbjct: 251 VFCNRKSEVDIVAKSLQVHGFNAAPIHGDLDQSLRMKTLSDFRSGELKLLVASDVAARGL 310 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+P + V + ++ + ++ +HR GRTGRAGR G + ++ Sbjct: 311 DIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRLGEAFMIV 350 >gi|73996626|ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 10 [Canis familiaris] Length = 812 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/369 (32%), Positives = 194/369 (52%), Gaps = 31/369 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L TL+ E Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLLTLIEE 456 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +D+ P A+ +APTRELA Q+ E G+ IGG+S + L+ G Sbjct: 457 SDQ-----GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC 511 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177 IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 512 EIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDT 571 Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219 K R+ +MF+AT+ PA+ LA++Y + V I S + H + Sbjct: 572 DEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERV 631 Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 + + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 632 EQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKG 691 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRAG Sbjct: 692 QEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG 751 Query: 340 RKGMSVFVI 348 + G+++ + Sbjct: 752 KSGVAITFL 760 >gi|312130721|ref|YP_003998061.1| dead/deah box helicase domain protein [Leadbetterella byssophila DSM 17132] gi|311907267|gb|ADQ17708.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila DSM 17132] Length = 400 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 206/374 (55%), Gaps = 22/374 (5%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPASAPLAL 78 Y + T +QE + L +KD+L AQTG+GKT AF + + S + E D+ S L Sbjct: 21 YQDTTPIQEMAIPLVLEKKDLLACAQTGTGKTAAFLIPILSLIREEGGDQLS------TL 74 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAHIVVGTPGRL 135 + PTRELA Q+ ++E L GV GG + ++R L GA I++ TPGRL Sbjct: 75 ILVPTRELAKQIDEQVEGLGYFVGVTSLAIYGGGKGENWGQQRTALIEGADIIIATPGRL 134 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 H++ + +K +VLDEAD+MLD+GF DDI FI+ PK+R+ LMFSAT+ P I T Sbjct: 135 LAHMQSGKIKFDTIKRLVLDEADKMLDMGFSDDINFIIKHLPKERQTLMFSATMPPKIRT 194 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 A+N K+ +++ S ++ ID R + A + + ++L + I+F S R+ Sbjct: 195 FARNILKNPKEISL-SVSKPAEKIDQRFYMAADEQKLALLNHLLSPFEGQKIIIFTSQRS 253 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 + + K L+ + + +S ++ Q ER AL+ + G+ + +ATDV +RGID+ +L L Sbjct: 254 MIHKILKDLSRNKLKAKGVSSDIEQDEREVALRDFKAGKFNILVATDVLSRGIDISNLNL 313 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-----LFREANVSVVWE 370 V++ ++ + E+ +HR GRT RA +G+S+ + + R+A + L +E V + E Sbjct: 314 VVNFDVPRDAEDYIHRIGRTARADTEGVSITFLTEK-DRKAVKDIEALLEKEVEVQRITE 372 Query: 371 -----PAPSVEAIR 379 PAP + + Sbjct: 373 NLGLGPAPEFKVYK 386 >gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009] gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009] gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] Length = 472 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 192/346 (55%), Gaps = 10/346 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GYV+ T +Q+ + L KDVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAAAGYVSPTPIQQQAIPHVLARKDVLGIAQTGTGKTAAFVLPMLTMLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + A + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +++DEAD MLD+GF DIE I P R+ L F+AT+ I Sbjct: 132 RLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPTEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGA---KNAI 248 + + + + ++ ++ + V ++ + ++R GA KNAI Sbjct: 192 RRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIR--GATDLKNAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ + V+ K L H F V AL G++ Q R+ AL+ R G + +A+DVAARG+ Sbjct: 250 IFCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPILVASDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 D+P++ V + ++ +P++ +HR GRTGRAGR G +V ++ + Q+ Sbjct: 310 DIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAVTIVAPSDQK 355 >gi|312882439|ref|ZP_07742180.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC BAA-2122] gi|309369839|gb|EFP97350.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC BAA-2122] Length = 452 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E GY + +Q+ + L KDV+ +AQTG+GKT F L + L +N++ Sbjct: 12 ILKAIEELGYDTPSPIQKQAIPAVLSGKDVMAAAQTGTGKTAGFTLPILERL--DNNQRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + AL + PTRELA Q+ + + V GGV ++ + L+ G ++V Sbjct: 70 KGNHVRALILTPTRELAAQIQENVFKYSRHQRLTSQVVFGGVKINPQMMKLRKGCDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + K + L+ +VLDEAD MLD+GF DI IL+ PKKR+ L+FSAT S Sbjct: 130 TPGRLMDLYQQKAIKFDQLEVLVLDEADRMLDMGFIHDIRKILNLLPKKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK D V +++ +N ++ + +V ++ + +VF Sbjct: 190 AEIRQLAKGLVNDPVEISVTPQNSTAVTVEQSVYPADKRQKAPMLVELITQGKWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ +R + L + A+ G SQ R+ AL + G RV +ATD+AARGID+ Sbjct: 250 CRTKHGANRLAQFLNKAEITAAAIHGNKSQGARTRALSEFKTGEIRVLVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ +L + E+ +HR GRTGRAG G + ++ Sbjct: 310 PQLPQVVNFDLPNVAEDYVHRIGRTGRAGEAGKAFSLV 347 >gi|254519975|ref|ZP_05132031.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA] gi|226913724|gb|EEH98925.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA] Length = 481 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/371 (32%), Positives = 203/371 (54%), Gaps = 10/371 (2%) Query: 1 MKI--FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56 MKI FEN + + I +AL G+ + VQ+ ++ L +KD++V +QTGSGKT +FG+ Sbjct: 1 MKIDKFENMNLSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGI 60 Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 L + E ++ AL + PTRELA+QV ++ + V A G + Sbjct: 61 PLCELVNVEENKVK------ALILVPTRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNE 114 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + R+L+ HIV GTPGR+ DHI L+I+ + V++DEAD+ML++GF D I +LD Sbjct: 115 QIRELKQRVHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKL 174 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 P+ + +FSATI I L NY + +NI S+ I + V ++ ++ Sbjct: 175 PQSKNTALFSATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLL 234 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 L ++AI+FC+T+ SV + +L + V L G++ Q++R ++ ++ + Sbjct: 235 KSLYAFTDESAIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFK 294 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 V +ATDVAARGI + + V + E+ E+ +HR GR+GR +KG+++ ++ + +R Sbjct: 295 VLVATDVAARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGERRFL 354 Query: 357 ERLFREANVSV 367 + N S+ Sbjct: 355 NEIEEYINYSI 365 >gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis EO147] Length = 395 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/379 (35%), Positives = 201/379 (53%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + T AEN Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAENR--G 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L PKKR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPKKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N + + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE + Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREISQE 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIAGFEPDPNAKPEPIQRR 391 >gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans BC] gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans BC] Length = 564 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 184/341 (53%), Gaps = 4/341 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67 I +A+ E+GY N T +Q + L D+L AQTG+GKT AF L + L A Sbjct: 12 ILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRLAQGQAPTS 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 RF AL + PTRELA QV + + V GGV ++ + ++ G + Sbjct: 72 RFG-GRGVRALVLTPTRELAAQVEESVRTYGKHLDIKSTVIFGGVGMNPQIERIKRGVDV 130 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + +++S ++ +VLDEAD MLD+GF D++ +L PK ++ L+FSA Sbjct: 131 LVATPGRLLDLQQQGFIDLSQVEILVLDEADRMLDMGFIHDVKKVLALLPKAKQSLLFSA 190 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LA D + + N I V + +++I++ H Sbjct: 191 TFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQEHDWSQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ + + L +H Q +AL G SQ R+ AL+ + G+ R +ATD+AARG Sbjct: 251 LVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQIRALVATDIAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ID+ DL V++ E+ + PE+ +HR GRTGRAG++G +V ++ Sbjct: 311 IDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLV 351 >gi|163800537|ref|ZP_02194438.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp. AND4] gi|159175980|gb|EDP60774.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp. AND4] Length = 416 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 187/345 (54%), Gaps = 4/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q + + LS V T VQE + L KD+L +AQTG+GKT AFGL + ++ +N Sbjct: 10 IAQQLVDTLSGMNIVTPTPVQEKSIPHILEGKDLLAAAQTGTGKTAAFGLPIIQSV-QQN 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AP AL + PTRELA QV L A T + + GG S+ +++ L+ GA Sbjct: 69 KR---DGAPKALILVPTRELAQQVMDNLIQYSANTNLNIVCVYGGTSIGVQKKKLEEGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH+ + I+ +VLDEAD MLD+GF D++ IL P+ ++ ++FS Sbjct: 126 ILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQTMLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I T+A + V ++ N ++ V + + ++ + Sbjct: 186 ATFEERIKTIAYKLMDTPIEVEVSPANTTAENVKQMVYPVDKKRKRELLAYLIGSRNWQQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ K L + V+++G+ SQ R AL ++G+ R IATDVAAR Sbjct: 246 VLVFTKTKQGSDELVKELKLDGIKAVSINGDKSQGARQRALDDFKEGKVRALIATDVAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 G+D+ LE V++ +L E+ +HR GRTGRAG+ G++V ++ + Sbjct: 306 GLDIQALEQVVNFDLPFKAEDYVHRIGRTGRAGKSGLAVSLMSHD 350 >gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2] gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2] Length = 516 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 193/351 (54%), Gaps = 20/351 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +QE + L +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTMLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + A + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +++DEAD MLD+GF DIE + P R+ L F+AT+ P I Sbjct: 132 RLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFTATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---------DRDNAIVNILRY-HG 243 + + + + ++ + S AV VA S ++ + +++R Sbjct: 192 RRVTETFLHNPEKIEV-------SKPASTAVTVAQSQVACGREPHEKRETLRSLIRAATD 244 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +NAI+FC+ + V+ K L +H F V AL G++ Q R+ AL R G + +A+DV Sbjct: 245 LQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILVASDV 304 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 AARG+D+P++ V + ++ +P++ +HR GRTGRAGR G ++ ++ + Q+ Sbjct: 305 AARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQK 355 >gi|113477200|ref|YP_723261.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101] gi|110168248|gb|ABG52788.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101] Length = 495 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/379 (34%), Positives = 194/379 (51%), Gaps = 15/379 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + P L KD++ AQTG+GKT AF L + + + + A AL Sbjct: 22 GFTEPTPIQAQAIPPLLEGKDIVGQAQTGTGKTAAFSLPILEQIDIDTN------AVQAL 75 Query: 79 AIAPTRELAVQVGRELEWLY-------AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + PTRELA+QV + K + V GG S+ R+ + LQ G HIVVGT Sbjct: 76 ILTPTRELALQVTEAIRQFTGINSKGPTKRRLFVLTVYGGQSIERQSQRLQKGVHIVVGT 135 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D + L + HLK +VLDEADEML +GF D+E IL+++P +R+ FSAT+ Sbjct: 136 PGRIIDMLNRNSLKLDHLKMMVLDEADEMLSMGFIQDVEKILEAAPAERQTAFFSATMDY 195 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250 +I L Y + V V +A + I ++ + A+ IL + A++F Sbjct: 196 SIRKLVNKYLQSPVTVKVAQQKTTPKRITQTVYILPRGWSKGKALQPILELEDPEAALIF 255 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR + + T L V G L+Q +R L R+ + R +ATD+AARG+D+ Sbjct: 256 VRTRQAAAELTNQLQSAGHSVDEYHGNLNQSQRERLLTRFRNQQVRWVVATDIAARGLDV 315 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 L VI+ +L + ++ +HR GRTGRAGR+G ++ +I +R+ + R + Sbjct: 316 DHLTHVINYDLPDSVDSYVHRIGRTGRAGREGTAISLIHPVDKRKLRLIERHLRQRLNTR 375 Query: 371 PAPSVEAIRERDAQRILQD 389 P I R Q+ LQD Sbjct: 376 SIPKRSQIEARQLQK-LQD 393 >gi|323455700|gb|EGB11568.1| hypothetical protein AURANDRAFT_2416 [Aureococcus anophagefferens] Length = 435 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/353 (33%), Positives = 196/353 (55%), Gaps = 11/353 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E G+ T +Q+A + L +DV+ A+TGSGKT AFGL + LL + R Sbjct: 9 DAVGELGWAKPTRIQKAAIPVALSGRDVIGLAETGSGKTGAFGLPILHKLLEKPSRL--- 65 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +A+APTRELAVQ+ + L A G+ +GGV + + L H+VV TP Sbjct: 66 ---FGVALAPTRELAVQIHEVFDALGAAIGLRCVCVVGGVEIAAQALALAKLPHVVVATP 122 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS 190 GRL DH+ KG ++ K +V+DEAD ML + F +++ I+ + P++ R ++FSAT++ Sbjct: 123 GRLVDHLENTKGFSLRTCKCLVMDEADRMLSMDFEKELDAIVGAIPREGRCSMLFSATMT 182 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L + V+V + + +D R + V ++ + +L A+VF Sbjct: 183 SKVAKLQRASLYKPVKVAVNDKFAMPRQLDQRYLFVPAKHKECYLAAVLDARRGATALVF 242 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T A +R T +L F L G+++Q +R AL + G A + +ATDVAARG+D+ Sbjct: 243 CATCAGATRATLLLRNLGFDAACLHGQMAQPKRLGALHKFKAGAATILVATDVAARGLDI 302 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 P ++LV++ ++ ++ + +HR GRT RAGRKG ++ + Q + +R E L Sbjct: 303 PAVDLVLNYDVPTHGKEYVHRVGRTARAGRKGSAIAFVTQYDVELYQRLEHLI 355 >gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843] gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843] Length = 479 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 139/418 (33%), Positives = 218/418 (52%), Gaps = 17/418 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q + L D++ +QTG+GKT A+ L L + +N Sbjct: 16 QHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLERMDTKNPNVQ-- 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV ++ + + GG S+ R+ R L+ G IVVGTP Sbjct: 74 ----ALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEKGVQIVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + K L++ L VVLDEADEML +GF DD++ IL +SP R+ FSAT+ Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTACFSATMPRE 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251 I L N+ K + V ++ + I+ + L+ + + +L ++AI+F Sbjct: 190 IRDLIANFLKSPISVTVSQPQAAPAKIEQKIYLIPRGWTKLKVLQPLLEIEPLESAIIFV 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + T L E V G LSQ +R +Q R+G+ ++ +ATD+AARG+D+ Sbjct: 250 RTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVE 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRRAERLFREANVSVV 368 +L VI+ +L N E +HR GRTGRAG+ G ++ + I + + R+ E+ R+ S Sbjct: 310 NLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQRLRQRLES-- 367 Query: 369 WEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 P PS VEA R Q L++ L + + +V L ++DP+ IAA L++ Sbjct: 368 -SPIPSRTEVEAKRLAKLQNQLKEALSGERM-ASFLPLVRDLSEEYDPQAIAAAALQM 423 >gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica] gi|74660195|sp|Q6CH58|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3 gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica] Length = 480 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 191/342 (55%), Gaps = 9/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E E + T +Q + L +D++ AQTGSGKT AF + + +L EN + Sbjct: 75 ICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLY-ENPQ-- 131 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 PL + +APTRELA Q+ E L + G+ AV +GG+++ + L H++V Sbjct: 132 ----PLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIV 187 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P++R +FSAT Sbjct: 188 ATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNTYLFSAT 247 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + D VRV ++++ + ++ V +D +V ++ + + I Sbjct: 248 MTSKVEKLQRASLVDPVRVAVSTKYQTADNLLQYMVFCPFKHKDTHLVYLVSENAGNSMI 307 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T++ R + +L + + L G+LSQ R AL + G + IATDVA+RG+ Sbjct: 308 IFARTKSDTQRISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNILIATDVASRGL 367 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 D+P ++LVI+ ++ S+ ++ +HR GRT RAGR G SV ++ Q Sbjct: 368 DIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQ 409 >gi|120597338|ref|YP_961912.1| ATP-dependent RNA helicase RhlB [Shewanella sp. W3-18-1] gi|146294517|ref|YP_001184941.1| ATP-dependent RNA helicase RhlB [Shewanella putrefaciens CN-32] gi|189040045|sp|A4YB09|RHLB_SHEPC RecName: Full=ATP-dependent RNA helicase rhlB gi|189040084|sp|A1RFB3|RHLB_SHESW RecName: Full=ATP-dependent RNA helicase rhlB gi|120557431|gb|ABM23358.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145566207|gb|ABP77142.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] gi|319427882|gb|ADV55956.1| ATP-dependent RNA helicase, RhlB [Shewanella putrefaciens 200] Length = 439 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 196/341 (57%), Gaps = 9/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66 + +AL+E G+ T +Q L L+ KD+ AQTG+GKT+AF +A L ST + E Sbjct: 20 VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPEG 79 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + P A+ +APTRELA+Q+ ++ L T + V + GG S +R+ L G Sbjct: 80 RQIN---QPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVD 136 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184 I++GT GR+ D++R ++++ ++AVVLDEAD M DLGF DI F+ P +R ++ Sbjct: 137 ILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDANQRLNML 196 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + LA ++ D V+V+IA + + +I + D+ ++ ++ Sbjct: 197 FSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQEDKMRLLLTLIEEDWP 256 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF +T+ S L +V L+G++ Q++R L+ G+ + +ATDVA Sbjct: 257 EKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVA 316 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ + D+ V + +L + E+ +HR GRTGRAG KG+S+ Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSI 357 >gi|296107675|ref|YP_003619376.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99 Alcoy] gi|295649577|gb|ADG25424.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99 Alcoy] Length = 435 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 197/335 (58%), Gaps = 10/335 (2%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T +Q L LR +D++ A+TGSGKT AF L L + L + S A AL + P Sbjct: 1 MTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLLNNL-----KIS-FFAVQALVLCP 54 Query: 83 TRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 TRELA QV + + L V + + GG+ + + L++GAHI+VGTPGR+ H++ Sbjct: 55 TRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGSLRHGAHIIVGTPGRILKHLKN 114 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201 L++S +KA+VLDEAD MLD+GF DDI+ I+ PK+R+ L+FSAT I L+K + Sbjct: 115 ASLDLSQVKALVLDEADRMLDMGFFDDIKNIISICPKQRQTLLFSATYPEEIKRLSKQFM 174 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRASVSRF 260 KD V++ + + DI+ V+ + ++ ++L ++ + ++FC+T+ Sbjct: 175 KDPKEVHVVTPPEE-IDIEQHFYEVSRQAQKFPLLKSLLLHYRPVSVLIFCNTKQQTVEV 233 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T L F +AL+G++ Q ER A+ + + +ATDVAARG+D+ +L VI+ + Sbjct: 234 TDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSAVINFD 293 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 L+ + + +HR GRTGRAG KG+++ V P + QR Sbjct: 294 LAFDHDIHIHRIGRTGRAGSKGIALSIVTPADAQR 328 >gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium sp. Spyr1] gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] Length = 505 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 187/344 (54%), Gaps = 11/344 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G + ++QE L L D++ A+TG GKT AFG+ L + + +R P + Sbjct: 24 ALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHRITTDTER--PLT 81 Query: 74 A-PLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAH 126 P AL + PTREL +QV +L ++L A + V GG + LQ G Sbjct: 82 GIPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYEPQIEALQKGVD 141 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + L + L +VLDEADEMLDLGF DIE IL P KR+ ++FS Sbjct: 142 VVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQIPAKRQAMLFS 201 Query: 187 ATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 AT+ I TLA+ + Q +R + H + A D+ + IL+ G Sbjct: 202 ATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQFAYRAHALDKVEMVARILQAEGR 261 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++F T+ + + L E F+V A+ G+L Q R AL+ R+G V +ATDVA Sbjct: 262 GATMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRNGDVDVLVATDVA 321 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ D+ VI+ ++ + + +HR GRTGRAG+ G++V ++ Sbjct: 322 ARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLV 365 >gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002] Length = 518 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 8/339 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY + T +Q + L D+L AQTG+GKT F L + L + +PA+ Sbjct: 15 AVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRL----NSMAPAA 70 Query: 74 APL----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA QV + + V GGV ++ + L+ G IVV Sbjct: 71 GGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKRGVDIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT Sbjct: 131 ATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATF 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + +A N + + V + + +++R H +V Sbjct: 191 SDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIRQHSWFQVLV 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R + L + +A+ G SQ R+ AL +DG +V +ATD+AARGID Sbjct: 251 FTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGID 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 311 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 349 >gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01] gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01] Length = 499 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 185/339 (54%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L N Sbjct: 12 ILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 ++ AL + PTRELA QV +E ++Y++ + AV GGV ++ + L+ GA ++V Sbjct: 70 RSNQVRALVLTPTRELAAQV-QENVFMYSRHLPLTSAVVFGGVKINPQMLRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI ILD PK+R+ L+FSAT Sbjct: 129 ATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V +++ N ++ + + +V +++ K +V Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L + A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum PYR-GCK] Length = 505 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 187/344 (54%), Gaps = 11/344 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G + ++QE L L D++ A+TG GKT AFG+ L + + +R P + Sbjct: 24 ALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHRITTDTER--PLT 81 Query: 74 A-PLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAH 126 P AL + PTREL +QV +L ++L A + V GG + LQ G Sbjct: 82 GIPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYEPQIEALQKGVD 141 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + L + L +VLDEADEMLDLGF DIE IL P KR+ ++FS Sbjct: 142 VVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQIPAKRQAMLFS 201 Query: 187 ATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 AT+ I TLA+ + Q +R + H + A D+ + IL+ G Sbjct: 202 ATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQFAYRAHALDKVEMVARILQAEGR 261 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++F T+ + + L E F+V A+ G+L Q R AL+ R+G V +ATDVA Sbjct: 262 GATMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRNGDVDVLVATDVA 321 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ D+ VI+ ++ + + +HR GRTGRAG+ G++V ++ Sbjct: 322 ARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLV 365 >gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 477 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 188/338 (55%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ ++GY + +Q + L +DV+ +AQTG+GKT F L + LL++ +R Sbjct: 12 ILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPILE-LLSKGERAQ 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA QV + + AV GGVS+ + L+NG I+V Sbjct: 71 RGQV-RALVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIVPQLAALRNGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + K ++ S L+ +VLDEAD MLD+GF DI+ +L P KR+ LMFSAT S Sbjct: 130 TPGRLLDLCQQKAISFSKLEILVLDEADRMLDMGFIRDIKKVLALLPAKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V + + A++ +++ + K +VF Sbjct: 190 NEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPVDKTRKSMALIELIKTNDWKQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + A+ G SQ R+ AL + G +V +ATD+AARGID+ Sbjct: 250 SRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVMVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLV 347 >gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523] Length = 445 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 184/343 (53%), Gaps = 10/343 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL A+ Sbjct: 11 LICSALEKKGYTKPTPIQAKAIPLVLKGSDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQ 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G Sbjct: 71 ANRIK------TLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D L L VLDEAD MLD+GF +D++ I PKK + LMF Sbjct: 125 EILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT SP I LA ++ + V+ N I + + S + NA++++++ Sbjct: 185 SATFSPEIKNLANDFLNNPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKDQDLH 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AA Sbjct: 245 QVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKEINVLVATDIAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ L VI+ +L + E+ +HR GRTGRAG+ G+++ ++ Sbjct: 305 RGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLV 347 >gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense YUAN-3] gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense YUAN-3] Length = 435 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 115/334 (34%), Positives = 191/334 (57%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+ GY T +QE + L ++D+L +AQTG+GKT AF + + L E+ + + Sbjct: 12 ILKALAAAGYEQPTPIQEQSIPYILEKRDLLGTAQTGTGKTAAFAVPILDLLCREHGQST 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + AL ++PTRELA+Q+ + + V GGVS + L+ G I+V Sbjct: 72 GSRHIRALVLSPTRELAIQIKESFDQYSRFLHLRNTVIFGGVSQIPQVSRLREGVDILVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + +++SH+ VLDEAD MLD+GF D+ +++ P+ R+ L+FSAT+ Sbjct: 132 TPGRLLDLMNQRHVDLSHVSYFVLDEADRMLDMGFIHDVHKVVEKLPQNRQTLLFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA K+ +V++A + ++ + V ++ + +V++L+ ++ +VF Sbjct: 192 PDIARLADKLLKNPAQVSVAPVSSTAETVEQKLFYVDKKNKKHLLVHLLKTADMESVLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ + L + A+ G SQ R AL+ + + V +ATD+AARGID+ Sbjct: 252 SRTKHGANKIVEHLEKAGIPSKAIHGNKSQSARQQALREFKSRKIHVLVATDIAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 +L VI+ +L + PE +HR GRTGRAG+ GM+ Sbjct: 312 TELSHVINYDLPNEPETYVHRIGRTGRAGQSGMA 345 >gi|325684686|gb|EGD26840.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 478 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 141/418 (33%), Positives = 212/418 (50%), Gaps = 18/418 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ G+ T +Q + L +DV+ AQTG+GKT AFGL + L D Sbjct: 12 ILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPILQKL----DLDK 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A A+ I PTRELA+Q EL L V V GG + R+ R L+ I+VG Sbjct: 68 QEQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKKVPEILVG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K + + +K VVLDEADEMLD+GF DIE IL + + + L+FSAT+ Sbjct: 128 TPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMP 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L + + D V I ++ ID V V +++ + + ++ A+VF Sbjct: 188 KPIQVLGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVF 247 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V T+ L + + G+L+Q R L+ ++G + +ATDVAARG+D+ Sbjct: 248 GRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI 307 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSV 367 + V + ++ +P++ +H R GRAG+ GMSV FV P + R E L ++ + Sbjct: 308 SGVTHVYNYDIPQDPDSYVH---RIGRAGKSGMSVTFVTPNEIGYMRTIEDLTKKKMSPL 364 Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLR 422 P +A + Q +L+ D + GD K D LL + E IAA L+ Sbjct: 365 --RPPTDAQAFAGQMKQAVLK---VDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLK 417 >gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 471 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/352 (37%), Positives = 187/352 (53%), Gaps = 8/352 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+ I EALS +G + +Q L L +D++ A+TG+GKT+ FG+ L L Sbjct: 75 FDVEPE-ICEALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTL 133 Query: 64 AENDRF---SPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + PAS +P AL I PTRELA QV EL AK V + GG + + Sbjct: 134 GPGEEGWDEDPASGSPQALIILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 193 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 DL+ GA +VVGTPGRL D + L+++H+ VVLDEADEMLDLGF D+E IL + Sbjct: 194 DLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTRTD 253 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIV 236 R ++FSAT+ A+ LA+ Y + + + +V + N + Sbjct: 254 RHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEVVS 313 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 IL+ G I+F T+ + +R L F AL G+L Q R AL+ R+ + Sbjct: 314 RILQAEGRGRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRNSKVD 373 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V +ATDVAARGID+ D+ VI+ + + + +HR GRTGRAG G +V + Sbjct: 374 VLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFV 425 >gi|222054856|ref|YP_002537218.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32] gi|221564145|gb|ACM20117.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32] Length = 456 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 196/342 (57%), Gaps = 3/342 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + + +++ G+ + T +QE L P L KDV AQTG+GKT AF ++L + LL + Sbjct: 7 NLPEQVLKGIADTGFTDCTPIQEKALPPALLGKDVAGQAQTGTGKTAAFLISLFTRLLNQ 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P AL +APTREL VQ+ ++ + L TG + GGV +++ L+ G Sbjct: 67 -EKAGTEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQKNALKEGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183 IV+GTPGRL D+++ K ++ +++A+V+DEAD M D+GF D+ FIL P R+ L Sbjct: 126 DIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFDARQNL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT++ + LA + +V + E ++ VA ++ ++ +LR G Sbjct: 186 MFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVARKEKFPLLLGLLRKKG 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F +T+ L + F +SG++ Q++R L+ ++G+ + IATDV Sbjct: 246 MDRTMIFVNTKREAEYLYDRLNANEFPARVISGDVEQRKRMRILEDFKNGKLPIMIATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 A+RG+ + + VI+ +L + E+ +HR GRT RAG +G ++ Sbjct: 306 ASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAI 347 >gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848 str. F0332] Length = 531 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 193/350 (55%), Gaps = 15/350 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAEND 67 I +AL ++G + +Q L LR D++ A+TG+GKT+ FG+ + + + E Sbjct: 47 IVDALKDKGITHPFPIQALTLPVALRGNDIIGQAKTGTGKTLGFGIPMLENTAGIDEEGW 106 Query: 68 RFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 P A P L I PTRELA QV EL A+ + + GG + ++ L+ G Sbjct: 107 ESVPVQARGKPQGLVILPTRELAKQVAEELRAAAARRRLRIVEVYGGRAYEPQQEALKEG 166 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A IVVGTPGRL D ++ + L++++++ VVLDEADEMLDLGF +D+E IL S+P R ++ Sbjct: 167 AEIVVGTPGRLVDLMKHRFLDLTYVRTVVLDEADEMLDLGFLEDVEKILASTPSNRHTML 226 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVNI 238 FSAT+ + +A+ Y + A + + + YR + ++ + I Sbjct: 227 FSATMPGPVVAMARRYMSRPTHIRAADPSDTGVTVKSVRQVVYRCHAL---NKSEVLARI 283 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ G IVF T+ + +R + L E F AL G+L Q R AL+ R+G+ V Sbjct: 284 LQAKGRGLTIVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQALRAFRNGKVDVL 343 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARGID+ D+ VI+ + + + +HR GRTGRAG+ G +V + Sbjct: 344 VATDVAARGIDVDDVTHVINYQCPEDEKTYIHRIGRTGRAGQSGTAVTFV 393 >gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] Length = 559 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 183/340 (53%), Gaps = 13/340 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALSE G +Q L LR +DV+ A+TG+GKT+ FG+ L L+ D Sbjct: 37 ALSESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQRLVTPGD-----G 91 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTREL +QV ++L GV + GG + + L++G +V+GTPG Sbjct: 92 TPQALVVVPTRELCLQVSQDLAEAGKYLGVRITSIYGGRPYESQIQSLRSGVDVVIGTPG 151 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + L + + +VLDEADEMLDLGF DIE IL P+ R+ ++FSAT+ I Sbjct: 152 RLLDLAEQRNLVLGKISTLVLDEADEMLDLGFLPDIERILRMVPEDRQTMLFSATMPGPI 211 Query: 194 TTLAKNY--QKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 TLA+ + Q +R H + YRA + D+ I +L+ G + Sbjct: 212 LTLARTFLRQPTHIRAEAGETGAIHERTTQFVYRAHSL---DKPELIAKVLQAEGRGLTM 268 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + + L E F A+ G+L Q R AL+ R G+ + +ATDVAARGI Sbjct: 269 IFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVAARGI 328 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ + VI+ ++ + + +HR GRTGRAGR G+++ ++ Sbjct: 329 DVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTGVAITLV 368 >gi|167526114|ref|XP_001747391.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774226|gb|EDQ87858.1| predicted protein [Monosiga brevicollis MX1] Length = 504 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 213/386 (55%), Gaps = 13/386 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + +V+ EA + + T +Q + L+ KDV+ A+TGSGKT AF L + LLA Sbjct: 88 LAEVLCEACATLKFTKPTEIQRRSIPLALQGKDVIGLAETGSGKTAAFALPVLHDLLATK 147 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL +APTRELA Q+ + L + G+ AV +GG+ + + L H Sbjct: 148 GK----KEFFALVLAPTRELAFQIRQTFNALGSPIGLKSAVLVGGIDMTTQAIALAKKPH 203 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH+ KG ++ L+ +++DEAD ML++ + +++ IL P++RR +F Sbjct: 204 VLIATPGRLVDHLENTKGFHLKALRYLIMDEADRMLNMDYEKELDKILAVIPRERRTFLF 263 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + +D V+V + S+ + + R + V +D ++ ++ Sbjct: 264 SATMTSKVGKLQRASLRDPVKVEVNSKYKTVDTLIQRYMFVPQKFKDCYLIYLMNQLRGN 323 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + I+FCST +V + T VL + F V L G++SQ +R AL + +ATDVA+ Sbjct: 324 SFIIFCSTCNNVMKATLVLRDLGFDAVCLHGQMSQPKRLGALAKFTSQSHTILVATDVAS 383 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q +R+ EA + Sbjct: 384 RGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGHAITIATQYDVELFQRI--EALI 441 Query: 366 SVVWEPAPS----VEAIRER--DAQR 385 E P+ V + ER DAQR Sbjct: 442 GKKMEEYPTESSQVLQLLERVSDAQR 467 >gi|39995629|ref|NP_951580.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA] gi|39982392|gb|AAR33853.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA] gi|307634711|gb|ADI83374.2| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens KN400] Length = 443 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/342 (33%), Positives = 194/342 (56%), Gaps = 3/342 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + + +++ G+ + T +QE L L KDV AQTG+GKT AF ++L + LL Sbjct: 7 NLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTKLL-R 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + R P A+ +APTREL VQ+ ++ + L A G + GGV +++ L+ GA Sbjct: 66 SGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGA 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183 +VVGTPGRL D+++ K ++ ++ +V+DEAD M D+GF D+ FIL P KR+ L Sbjct: 126 DVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYDKRQNL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT++ + LA + +V + E ++ V ++ ++ +LR G Sbjct: 186 MFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLRKEG 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F +T+ + L + F +SG++ Q++R L+ + G+ + IATDV Sbjct: 246 MERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMIATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 A+RG+ + + VI+ +L + E+ +HR GRT RAG +G ++ Sbjct: 306 ASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAI 347 >gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886] gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886] Length = 410 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 116/345 (33%), Positives = 181/345 (52%), Gaps = 4/345 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + + L+ GY + T++Q+ + L KDV+ +AQTG+GKT AF L + LL Sbjct: 6 FSLLHPTLQHTLNALGYSDPTAIQQQAIPHVLDGKDVMGAAQTGTGKTAAFALPVIHQLL 65 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + A L + PTRELA QV ++ T + GG +++ ++ L Sbjct: 66 ERGVK----GAARVLVVTPTRELAQQVYEKVVEYSQHTSLKCVALYGGANINPQKNQLTK 121 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 I+VGTPGRL DH+ L ++ L ++LDEAD MLD+GF DI+ ++ PK R+ L Sbjct: 122 KPEIIVGTPGRLLDHLHIGTLTLNSLDTLILDEADRMLDMGFISDIKRLMKKMPKTRQTL 181 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 FSAT + LA + VR+ +++ N ++ V + + ++ Sbjct: 182 FFSATYPKQVVDLAYRLLSNPVRIEVSTANSTAETVNQLVHPVDKKRKRELLSYLIGSRN 241 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF TR S L + A+ GE +Q R+ L+ + G RV +ATDV Sbjct: 242 LQQVLVFAKTRQSTEALANELKLDGLKAEAIHGEKTQGARNRVLEGFKSGEVRVLVATDV 301 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+P L+ V + EL PE+ +HR GRTGRAG+ GM++ ++ Sbjct: 302 AARGLDIPSLDTVFNYELPHQPEDYIHRIGRTGRAGKPGMAISLV 346 >gi|282897303|ref|ZP_06305305.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9] gi|281197955|gb|EFA72849.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9] Length = 497 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/352 (34%), Positives = 187/352 (53%), Gaps = 10/352 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L G+ T++Q + L +DV+ +QTG+GKT AF L + +R P Sbjct: 19 LENMGFTTPTNIQSQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL-------ERLDPNKR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL + PTRELA+QV + + + V GG S+ R+ L+ G H+VVGTPG Sbjct: 72 AVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLKRGVHVVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D + L + +K VLDEADEML +GF DD+ IL +P++R+ +FSAT+ P+I Sbjct: 132 RVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQERQTALFSATMPPSI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCS 252 L + V V + + I+ A L+ + A+ IL + A++F Sbjct: 192 RQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKALQPILEMEDPETALIFVR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + + T L V G+LSQQ R L R+ + R +ATD+AARG+D+ Sbjct: 252 TRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAARGLDVDL 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 L VI+ +L + E +HR GRTGRAG++G ++ ++ Q +RR ++ F N Sbjct: 312 LSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLV-QPFERRKQQAFERHN 362 >gi|167568882|ref|ZP_02361756.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786] Length = 408 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 198/372 (53%), Gaps = 11/372 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + T AEN Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAENR--G 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L PKKR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPKKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N + + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE + Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREISQE 372 Query: 367 VV--WEPAPSVE 376 V+ +EP P+ + Sbjct: 373 VIAGFEPDPNAK 384 >gi|313836106|gb|EFS73820.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2] gi|314929641|gb|EFS93472.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1] gi|314970583|gb|EFT14681.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3] Length = 476 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 194/366 (53%), Gaps = 11/366 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 +P I AL++ G +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 26 GVPDEIVAALAKMGIAAPFRIQIAAIPDAIAGRDVLGRAATGSGKTLAFGVPLLSRLSAA 85 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E+ R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 86 PREDKR------PRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFK 139 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P+ + Sbjct: 140 KGVDLVVATPGRLVDLLETGDADLSGIAVTVLDEADHMAELGFMEAVGSILDAVPEDGQR 199 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ A+ L K Y D V + S+ S + + A + ++ + I Sbjct: 200 LLFSATLDGAVNKLVKRYMHDPVTHEVDSDKGSVSTMTHHAFQIKPHEKVGLMCEIANRS 259 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + IVF T+ SR + L AL G L+Q R+ L +DG V +ATD Sbjct: 260 G--HTIVFARTQRGASRMAEQLRGAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LV+ + N ++ LHRSGRT RAG G V +I + +R RL+R+ Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNSKDYLHRSGRTARAGHDGAVVSLILPHQRRTMARLYRQ 377 Query: 363 ANVSVV 368 A V V Sbjct: 378 AGVKPV 383 >gi|289676388|ref|ZP_06497278.1| helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 435 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 198/348 (56%), Gaps = 10/348 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ + ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359 >gi|145611832|ref|XP_001411591.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15] gi|152060562|sp|A4RGD1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3 gi|145019073|gb|EDK03352.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15] Length = 538 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/346 (34%), Positives = 191/346 (55%), Gaps = 8/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + + EA + T +QE + L+ +DV+ A+TGSGKT AF L + +LL + Sbjct: 117 IVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP 176 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 L +APTRELA Q+G+ E L A + AV +GG+ + + L H Sbjct: 177 QPL------FGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH 230 Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL DH+ + KG ++ LK +V+DEAD +LDL F ++ IL P++RR +F Sbjct: 231 IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRTFLF 290 Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT+S + +L + +D ++V+++S + + S + + + +D ++ + Sbjct: 291 SATMSSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAG 350 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K IVF T R + +L F + L G+LSQ R AL + + +ATDVA Sbjct: 351 KTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVA 410 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P+++LVI+ ++ + +HR GRT RAGR G ++ +I Q Sbjct: 411 ARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQ 456 >gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon] Length = 392 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/381 (33%), Positives = 210/381 (55%), Gaps = 11/381 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 MK F+ I + I +++ E G+ T +QE ++ L KDV+ A TGSGKT+AF Sbjct: 1 MKSFKELGIIEPILKSIEEEGFERPTEIQEKSISLILSGKDVIAEAATGSGKTLAF---- 56 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 A+ ++ + ++ + L + PTRELA QV L + + GGVS++ + Sbjct: 57 AADIIEKTEK---GTGIRTLVLTPTRELAQQVAAALSLFSKYKPLRIVAVFGGVSINPQI 113 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ A +VVGTPGR+ DHI + LN+S + +VLDEAD MLD+GF D++ I+ P+ Sbjct: 114 TQLRR-ADVVVGTPGRILDHIGRRTLNLSKVNILVLDEADRMLDMGFIPDVKKIVGECPR 172 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ L+FSATIS IT LA+ YQKD + V+ A S + V + + + +V++ Sbjct: 173 NRQTLLFSATISREITVLARKYQKDPISVS-AEAYVDPSKLTQLYYDVPDNLKFSLLVHL 231 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L++ ++ +VFC+TR + L +A+ G L+Q +R ++ RV Sbjct: 232 LKHEESELVMVFCNTRTNTDFVASNLKALGIGAMAIHGGLTQDKRDRVMKQFHSHDVRVL 291 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 + TDVAARG+D+P + + + ++ ++ +HR GRT RAG+ G+++ ++ R Sbjct: 292 VCTDVAARGLDIPHVSHIYNYDIPMYGKDYIHRIGRTARAGKDGVAINILASRDYDSFRR 351 Query: 359 LFREANVSVVWEPAPSVEAIR 379 + + V++ E P V+ +R Sbjct: 352 VMKSNEVTITEEKLPDVKKVR 372 >gi|156977147|ref|YP_001448053.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116] gi|156528741|gb|ABU73826.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116] Length = 421 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 185/345 (53%), Gaps = 4/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q + + LS V T VQE + P L KD+L +AQTG+GKT AFGL + ++ + Sbjct: 14 IEQQLVDTLSGMNIVTPTPVQEKSIPPVLEGKDLLAAAQTGTGKTAAFGLPIIQSVQQKK 73 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 AP AL + PTRELA QV L A T + + GG S+ +++ L+ GA Sbjct: 74 RN----GAPQALILVPTRELAQQVMDNLTQYAANTDLKIVCVYGGTSIGVQKKKLEEGAD 129 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH+ + I+ +VLDEAD MLD+GF D++ IL P+ ++ ++FS Sbjct: 130 ILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQTMLFS 189 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I T+A V V ++ N + V + + ++ + Sbjct: 190 ATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 249 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ K L + V+++G+ SQ R AL + G+ R IATDVAAR Sbjct: 250 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKAGKVRALIATDVAAR 309 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 G+D+ +LE V++ ++ E+ +HR GRTGRA + G++V ++ ++ Sbjct: 310 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRARKSGLAVSLMSRD 354 >gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92] gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92] Length = 427 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 191/368 (51%), Gaps = 12/368 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFSP 71 L GY T +Q + LR D+L AQTG+GKT +F L + L ++N D + P Sbjct: 18 TLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPIIEKL-SKNPIDGYRP 76 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A L +APTRELA+QV G+ V GGV V + + L+ G I+V T Sbjct: 77 VRA---LVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQIKRLKRGTDILVAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D +R K +++ L+ +VLDEAD MLDLGF D I+ I+D + R+ L+F+AT Sbjct: 134 PGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDRQTLLFTATADE 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 ++ LA+ Y + ++ + N I A V + + + ++ +VF Sbjct: 194 SVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLITEGKWGQTLVFV 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V T+ L + A+ GE SQ+ER L G V +ATDVAARG+D+ Sbjct: 254 RTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVATDVAARGLDIE 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVV 368 L V++ +L + PE +HR GRTGRAG G +V V P + +R E+L ++ + Sbjct: 314 SLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRIEKLIKQ---KIK 370 Query: 369 WEPAPSVE 376 P P +E Sbjct: 371 LRPVPRIE 378 >gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 549 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 189/338 (55%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L KDV+ +AQTG+GKT F L L LL++ ++ + Sbjct: 12 IQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLSKGNK-A 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV +E + AV GGV ++ + + L++G ++V Sbjct: 70 KAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ + + L+ +VLDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 130 TPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK V +++ N + + V + + ++ +++ + +VF Sbjct: 190 DEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQEDWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 250 SRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 347 >gi|292670294|ref|ZP_06603720.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541] gi|292648025|gb|EFF65997.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541] Length = 425 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/354 (32%), Positives = 192/354 (54%), Gaps = 6/354 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 + +V+ L +G T VQE + P +DV+ AQTG+GKT++F L L + + Sbjct: 8 GVSEVLTALLQRQGITEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLSFLLPLLEKIKPQ 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL IAPTRELA+Q+ R E L G+ V GG + R++ L+ Sbjct: 68 G------TVAQALVIAPTRELAIQIARVAEPLGEPLGIGTIVIYGGADIERQKEKLRRRP 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+GTPGRL DH+R L + + +VLDEADEML +GF +D+E +L + + ++ +F Sbjct: 122 QLVIGTPGRLLDHVRRGTLALGSVNKIVLDEADEMLKMGFIEDVESLLGCAAQDYQLALF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L K + + + I E + I+ A+ V+ ++ + + + Sbjct: 182 SATMPERIVRLTKKFMTNPAHIRIEGETTTLASIEQIALSVSEGEKIDRLCASINEEAPY 241 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A+VFC+T+ LA + V ALSG+L+Q +R+ L+ R+ + ++ ATD+AA Sbjct: 242 LAMVFCATKERTHTVMMELARRGYLVDALSGDLTQTQRAFVLRRFREAKLQILCATDIAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ + V + +L + +HR GRTGRAG +G ++ ++ + + ++ Sbjct: 302 RGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGAQGKAITLVAAHQHEKLRKM 355 >gi|58579756|ref|YP_198772.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424350|gb|AAW73387.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 429 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 208/386 (53%), Gaps = 16/386 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + AL+ G LT +Q A++ P L +D++V+AQTGSGKT+A+ L L L Sbjct: 11 QLPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQQRLQ- 69 Query: 66 NDRFSPASAPLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRD 120 +P P L + PTREL QV + L L A + + GG +++ + Sbjct: 70 ----APEQVPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMA 125 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GA IV+ TPGRL D + L +S ++ +VLDEAD +LDLGF +I+ IL P +R Sbjct: 126 LRGGADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPAQR 185 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++ SAT PAI +LAK +D +R+ I + I RA+ V R + ++L+ Sbjct: 186 QSVLVSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQRAIAVDAGQRTQLLRHLLQ 245 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H +VF ++R + + + L++ + + L GELSQ R L+ + +V +A Sbjct: 246 EHAWPQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVA 305 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR----- 354 TD+AARGID+ L V++ +L + + HR GRT RAG G ++ FV + Q+ Sbjct: 306 TDLAARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGKAISFVTAERAQQWRLIE 365 Query: 355 RAERLFREANVSVVWEPAPSVEAIRE 380 + + L +V +EP+P+ + R+ Sbjct: 366 KRQGLRVPTSVIEGFEPSPAEASARD 391 >gi|91791813|ref|YP_561464.1| ATP-dependent RNA helicase RhlB [Shewanella denitrificans OS217] gi|123166515|sp|Q12S35|RHLB_SHEDO RecName: Full=ATP-dependent RNA helicase rhlB gi|91713815|gb|ABE53741.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 432 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/353 (35%), Positives = 197/353 (55%), Gaps = 17/353 (4%) Query: 4 FENIP---QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 F ++P +VI +AL+E G+ T +Q L L+ KD+ AQTG+GKT+AF +A + Sbjct: 11 FADLPLHAEVI-QALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFN 69 Query: 61 TLLAENDRFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114 LL +PA + P A+ +APTRELA+Q+ ++ L TG+ V + GG S Sbjct: 70 HLLT-----TPAPQARELNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESY 124 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 +R L G I++GT GR+ D++R ++++ ++AVVLDEAD M DLGF DI F+ Sbjct: 125 EVQREVLDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIRFLFR 184 Query: 175 SSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 P R ++FSAT+S + LA ++ D +V + E + +I + D+ Sbjct: 185 RMPDASSRLNMLFSATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIKEEIFYPSTEDKM 244 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 ++ ++ + AIVF +T+ S L +V L+G++ Q++R L+ Sbjct: 245 RLLLTLMEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTS 304 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G V +ATDVAARG+ + D+ V + +L + E+ +HR GRTGRAG KG+SV Sbjct: 305 GDLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSV 357 >gi|311103372|ref|YP_003976225.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8] gi|310758061|gb|ADP13510.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8] Length = 506 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 196/378 (51%), Gaps = 9/378 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T +Q + L+ D+L +AQTG+GKT F L + L+ + Sbjct: 19 AIAETGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHLLMQKKPELRKPG 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTREL QV ++ T + V GGV+++ + L+ I+V TPG Sbjct: 79 RPRCLILTPTRELTAQVEESVQTYGKYTPLNSMVMFGGVNINPQISALRKPLDILVATPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT S I Sbjct: 139 RLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATFSDEI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLA+ + V++ N + +V + + I +I+R G +VF T Sbjct: 199 RTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLISHIIRESGWHQVLVFTRT 258 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + A+ G SQ R+ AL +D V +ATD+AARG+D+ L Sbjct: 259 KHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVLVATDIAARGLDIDQL 318 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLFREANVS 366 V++ EL + PE+ +HR GRTGRAG G +V ++ ++++R ++ V Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKDIERLIKKTIERKPVE 378 Query: 367 VVWEPAPSVEAI--RERD 382 PA S A +ERD Sbjct: 379 GWTPPATSAAAFDRQERD 396 >gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2] Length = 489 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 193/357 (54%), Gaps = 25/357 (7%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72 AL+ +G + +Q L L D++ A+TG+GKT+ FG+ L ++ +N D +PA Sbjct: 20 ALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQRVVGKNEDGAAPA 79 Query: 73 SA---------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 P AL + PTRELA QV +L + + + GG+ + Sbjct: 80 DPENTPEFVSDSTETRLPQALVVVPTRELAKQVAADLVTASTQRDIDIMTIYGGMDFDPQ 139 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 + L++G +VVGTPGRL D K L + ++ VVLDEADEMLDLGF D+E I+++ P Sbjct: 140 IKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLGFLPDVEKIINAVP 199 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRV------NIASENRQHSDIDYRAVLVALSDR 231 R+ ++FSAT+ A+ TLA+ Y + +++ + + YRA + D+ Sbjct: 200 AHRQTMLFSATMPGAVITLARRYMSRPTHIRAHDNEDLSLLGKNTEQLVYRAHSM---DK 256 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 + +L+ G I+F T+ + + L + FQV L G+L Q +R AL+ R Sbjct: 257 SELVARMLQAEGRGRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSFR 316 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +G+ V +ATDVAARGID+ D+ V++ + + + +HR GRTGRAG G++V ++ Sbjct: 317 EGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGNTGIAVTLV 373 >gi|294498466|ref|YP_003562166.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] gi|294348403|gb|ADE68732.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551] Length = 466 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/353 (32%), Positives = 200/353 (56%), Gaps = 9/353 (2%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 MK F N+ + I +A+ G+ T +Q + + KD++ AQTG+GKT AFG+ L Sbjct: 1 MKKFSDFNLSKDIEKAVHNLGFEEATPIQAEAIPIAMAGKDLIGQAQTGTGKTTAFGIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + + + +APTRELA+QV EL + GV GG ++R+ Sbjct: 61 IERVELGEEGIQ------GIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQI 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+N HI+ TPGRL DH++ + + ++H++ VLDEADEML++GF +DI+ IL Sbjct: 115 KALKNRPHIISATPGRLKDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQSILGGISS 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + L+FSAT+S + +LA+ + D V + ++ +I+ + + + + + + + N+ Sbjct: 175 PHQTLLFSATMSKQVQSLAQKFMNDPELVKVKAKELTVKNIEQQYMEIPENRKFDVLCNL 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + AIVF T+ V + L + + + G+L+Q +R++ ++ ++ + Sbjct: 235 VDLQVPDLAIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKNHTIEIM 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 +ATDVAARG+D+ + V + ++ +PE+ +HR GRTGRAG KG++V F+ P+ Sbjct: 295 VATDVAARGLDITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFITPR 347 >gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba] gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba] Length = 522 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 243/470 (51%), Gaps = 41/470 (8%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + +A E + + + +Q + L+ KDV+ A+TGSGKT AF L + LL R Sbjct: 77 ETLCQACDELKWRSPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQR 136 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + AL + PTRELA Q+G + E L + G+ V +GG+ + + L HI+ Sbjct: 137 Y------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHII 190 Query: 129 VGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 + TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +FSA Sbjct: 191 IATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSA 250 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T++ + L + KD V+V ++++ + + + + + +D +V+IL + Sbjct: 251 TMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNDLAGNSF 310 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++FCST + + +L + L G++SQ +R AL + + I+TDVA+RG Sbjct: 311 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 370 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREAN 364 +D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E L + Sbjct: 371 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEHLLGK-Q 429 Query: 365 VSVVWEPAPSVEAIRER--DAQRI----LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418 + + V A++ER +AQR L+D ++G K+ D+ HD + Sbjct: 430 LPLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTKGVKG-HKRGGDI----HDDSENFT 484 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468 G A + I P+ V G + K GG R +F +W Sbjct: 485 G----------ARKRIKPMGAVGG---------SHKPVGGGRKSFGKKNW 515 >gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp. MP688] gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688] Length = 468 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 135/349 (38%), Positives = 198/349 (56%), Gaps = 19/349 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I AL E GY T +Q + L D++ SAQTG+GKT AF L A LLA+ Sbjct: 9 NLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLP-ALNLLAD 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 S + P L + PTRELA QV + +++ A+T +V GG+ + + L Sbjct: 68 -IHPSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIV----GGMPYPLQNKLL 122 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 I+V TPGRL DH+ +++S L+ ++LDEAD MLD+GF DIE I ++ P++R+ Sbjct: 123 SQPLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQ 182 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILR 240 LMFSAT I +AK KD + IA++ +H++I+ R V + N ++ ++L Sbjct: 183 TLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHKNKLLEHLLI 242 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLF----QVVALSGELSQQERSNALQMMRDGRAR 296 AIVF ST+ R +LAE L+ + AL G+++Q R+ L +R G R Sbjct: 243 APDVNQAIVFTSTK----RHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVR 298 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V +ATDVAARGID+ + VI+ +L E+ +HR GRTGRAG G++V Sbjct: 299 VLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAV 347 >gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta] gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta] Length = 524 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/356 (31%), Positives = 199/356 (55%), Gaps = 10/356 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + +A E + + +Q + L+ KDV+ A+TGSGKT AF L + LL R Sbjct: 78 ETLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQR 137 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + AL + PTRELA Q+G + E L + G+ V +GG+ + + L HI+ Sbjct: 138 Y------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHII 191 Query: 129 VGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 + TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +FSA Sbjct: 192 IATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSA 251 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T++ + L + KD V+V ++++ + + + + + +D +V+IL + Sbjct: 252 TMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELSGNSF 311 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++FCST + + +L + L G++SQ +R AL + + I+TDVA+RG Sbjct: 312 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 371 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 +D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E L Sbjct: 372 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLL 427 >gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster] Length = 507 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 118/385 (30%), Positives = 214/385 (55%), Gaps = 13/385 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + + + +A E + + +Q + L+ KDV+ A+TGSGKT AF L + LL Sbjct: 68 LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 127 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ AL + PTRELA Q+G + E L + G+ V +GG+ + + L H Sbjct: 128 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 181 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +F Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + KD V+V ++++ + + + + + +D +V+IL Sbjct: 242 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 301 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + + +L + L G++SQ +R AL + + I+TDVA+ Sbjct: 302 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 361 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E L + Sbjct: 362 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 421 Query: 363 ANVSVVWEPAPSVEAIRER--DAQR 385 +++ V A++ER +AQR Sbjct: 422 -QLTLYKCEEDEVMALQERVAEAQR 445 >gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989] gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989] Length = 464 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/359 (33%), Positives = 196/359 (54%), Gaps = 13/359 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++++GY + +Q + L +DV+ +AQTG+GKT F L L L + Sbjct: 12 ILKAVTDKGYDTPSPIQAKAIPVVLEGRDVMAAAQTGTGKTAGFTLPLLEIL----SKGQ 67 Query: 71 PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 PA A AL + PTRELA QV +E + AV GGV ++ + L+ G I+ Sbjct: 68 PARANQVRALVLTPTRELAAQVAESVETYGKHLKLRSAVVFGGVKINPQMMKLRGGVDIL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D + ++ + L+ ++LDEAD MLD+GF +DI IL + P+KR+ LMFSAT Sbjct: 128 IATPGRLLDLHQQNAMSFNKLEILILDEADRMLDMGFINDIRKILKALPEKRQNLMFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LAK + +++ +N + + V + + +V ++ H + + Sbjct: 188 FSDDIRDLAKTIVNKPIEISVTPKNSTATTVTQWIHPVDKKQKPSLLVELIYQHKWEQVL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ L +H + A+ G SQ R+ AL + G+ RV +ATD+AARG+ Sbjct: 248 VFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTRALADFKAGKVRVLVATDIAARGL 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLF 360 D+ L V++ +L + E+ +HR GRTGRAG G +V ++ Q+++R ++L Sbjct: 308 DIEQLPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADEIQQLQDIERLIQKLL 366 >gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG 19424] gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG 19424] Length = 516 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/344 (35%), Positives = 184/344 (53%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E+GY T +Q + L+ D+L AQTG+GKT F L + L R + Sbjct: 12 IVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQLLSETAARQA 71 Query: 71 PAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + A AL + PTRELA QV + + V GGV ++ + L+ G Sbjct: 72 GGAQRGGRVAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGINPQIEQLKRG 131 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVV TPGRL DH+ + +++S ++ +VLDEAD MLD+GF DI IL+ P KR+ L+ Sbjct: 132 VEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKILNVLPAKRQNLL 191 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT S I LA + + +A N +D R V + + +++R H Sbjct: 192 FSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRELLAHLVRQHDW 251 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ +R + L + +A+ G SQ R+ AL + G R+ +ATD+A Sbjct: 252 HQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTLRLLVATDIA 311 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ Sbjct: 312 ARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLV 355 >gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 549 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 187/338 (55%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + +Q + L KDV+ +AQTG+GKT F L L LL++ ++ Sbjct: 12 IQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLSKGNKAK 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA QV +E + AV GGV ++ + + L++G ++V Sbjct: 71 VGQI-RALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + K + + L+ +VLDEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 130 TPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK V +++ N + + V + + ++ +++ + +VF Sbjct: 190 DEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQENWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 250 SRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLV 347 >gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica] Length = 627 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 194/355 (54%), Gaps = 26/355 (7%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 L RG L +Q + KDV+ A+TG+GKT AF L + + L EN D Sbjct: 59 LQARGVKALFPIQIKTFHHIHTGKDVIAQAKTGTGKTFAFALPVLTKL--ENSGIDGLKS 116 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P + +APTREL Q+ + E L +K V+++ GGVS ++ L+NG I+ G Sbjct: 117 GRKPKVIVMAPTRELVSQIASDFESLISKNLKVLSI-YGGVSYEKQTTALKNGVDIIAGA 175 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL------DSSPKKRRMLMF 185 PGR+ D I L++S ++ V+LDE D MLD+GF D +E IL ++ K + L+F Sbjct: 176 PGRVRDLINKGHLDLSKIEYVILDEVDRMLDMGFSDIVEEILSYIYPSETDKKGPQTLLF 235 Query: 186 SATISPAITTLAKNYQK-DAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242 SAT+ I + K Y K DA++V + EN + S +++ A+ +R I +I+R H Sbjct: 236 SATMPNWIHNIVKKYLKPDAIKVCLIDENGSKAASTVEHLAIQCPWRERAGTIPDIIRVH 295 Query: 243 GAKN---AIVFCSTRASVSRFTKVLAEHLFQ---VVALSGELSQQERSNALQMMRDGRAR 296 G N I+FC + LA H L G++ Q++R L+ R+G+ Sbjct: 296 GGGNQARCIIFCERKKDADE----LASHSAMKSDCHVLHGDVPQEKRELVLKKFREGKYS 351 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 V + T+VAARG+D+PD++LVI + E+ +HRSGRTGRAGRKG+ + F P+ Sbjct: 352 VLVTTNVAARGLDVPDIDLVIQCHPPKDVEDYIHRSGRTGRAGRKGVCICFYEPK 406 >gi|67423413|dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa] Length = 843 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 189/351 (53%), Gaps = 8/351 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS---AP 75 GY T VQ+ + L +D++ SA TGSGKT AF + + + LL + + +P+ P Sbjct: 428 GYTKPTPVQKGAIAVVLARRDLIASAVTGSGKTAAFLVPVVNILLEKQVQGAPSGEVQKP 487 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 + I+PTRELA+Q+ RE + + + GG V ++ L NG +I+VGTPGRL Sbjct: 488 EVVIISPTRELAIQIHREARKFSHNSVLKSVIVYGGTQVSHQKSSLMNGCNILVGTPGRL 547 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPKKRRM-LMFSATISP 191 D + ++ S+++ +LDEAD MLD+GF DIEFI +P RR+ LMFSAT Sbjct: 548 KDFVDKGFIDFSNVQFFILDEADRMLDMGFGSDIEFIAQHPTMTPVGRRVTLMFSATFPD 607 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + +A Y D V V + + D+ V D+ N +V ILR G IVF Sbjct: 608 DVQKIAGKYLHDYVFVTTGNIGGMNPDVCQEFHEVQRQDKRNKLVEILRDLGNSRVIVFV 667 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 ++ + LA FQ ++ G+ Q +R AL+ + G+ + +AT+VAARG+D+ Sbjct: 668 ESKKTADFIAAFLANTQFQATSIHGDRLQSQREQALREFKSGQRNILVATNVAARGLDIA 727 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361 +E VI+ +L ++ E +HR GRTGR G G S+ F P A RL + Sbjct: 728 GVEYVINYDLPADIEEYVHRIGRTGRVGNAGRSISFYDPDRDAPNAGRLVQ 778 >gi|42521860|ref|NP_967240.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] gi|39574390|emb|CAE77894.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] Length = 505 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 182/344 (52%), Gaps = 3/344 (0%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P + + +L E GY T +Q A + L D+L AQTG+GKT AF L + Sbjct: 6 FTDLPLIAPLQFSLKEAGYETPTPIQLAAIPVILEGHDLLGIAQTGTGKTAAFSLPILQN 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + P S P L + PTRELA+Q+ +E + AV GGV + + R L Sbjct: 66 LSKHTRKIEPKS-PRCLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNPQVRAL 124 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 Q G I++ TPGRL D K L + ++ VLDEAD MLD+GF DI+ IL P+KR Sbjct: 125 QGGVDILIATPGRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLPQKRH 184 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ I TLA + +V + + ++ R + V + + +++IL+ Sbjct: 185 NLFFSATMPHEIQTLANRILVNPKKVEVTPVSSTAEKVEQRVMFVDKPQKLDLLLHILKD 244 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +VF + +R L + + G+ SQ +R AL+ ++G RV +AT Sbjct: 245 ESLSKVLVFVQMKYGANRVVDRLTKAGVAAAGIHGDKSQNQRQRALEEFKNGDVRVLVAT 304 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+AARGID+ + VI+ EL PE+ +HR GRT RAG G+S+ Sbjct: 305 DIAARGIDIDGITHVINLELPHIPESYVHRIGRTARAGATGISI 348 >gi|154332025|ref|XP_001561829.1| nucleolar RNA helicase II [Leishmania braziliensis MHOM/BR/75/M2904] gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis MHOM/BR/75/M2904] Length = 689 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 206/389 (52%), Gaps = 20/389 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE P V+ +AL RG ++ VQ N +R DVLV A+TGSGKT+AFG+ + LL Sbjct: 91 FEMNPIVV-KALQSRGIESMFPVQALTFNAIMRNADVLVQARTGSGKTLAFGIPIVERLL 149 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + P A+ PTRELA+QV L + G++V GGV+ + R L++ Sbjct: 150 KLQSHLTRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLIVTALYGGVAYANQERVLRS 207 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--------S 175 G IVV TPGR D + L+ + LDEAD MLD+GF+DDIE +L + Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGST 267 Query: 176 SPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231 S +K + L+FSAT+ + T + KD +++ + R S I + S+ Sbjct: 268 SAEKTVHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326 Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 + + ++++ Y GA +VF +T+ + + L G++ Q++R + ++ Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 RD + V IATDVAARG+DLP ++LVI S+ + +HR+GRTGRAGRKG+ V + Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQ 444 Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI 378 + ER+ R A + PAP+ E I Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEI 473 >gi|90424330|ref|YP_532700.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] gi|90106344|gb|ABD88381.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] Length = 503 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 187/338 (55%), Gaps = 6/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +Q+ + L +DVL AQTG+GKT AF L + + L R A Sbjct: 22 AVAATGYTTPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + A + VA+ IGGVS + L G +++ TPG Sbjct: 79 MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLTRGVDVLIATPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +V+DEAD MLD+GF DIE I P R+ L F+AT+ I Sbjct: 139 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILR-YHGAKNAIVF 250 + + + + V++ ++ + V ++ + +LR +NAI+F Sbjct: 199 RRITETFLHNPVKIEVSKPASTAVTVTQSQVATGREPHEKRETLRRLLRDAKDLQNAIIF 258 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ K L +H F V AL G++ Q R+ AL R G + +A+DVAARG+D+ Sbjct: 259 CNRKREVALLAKSLEKHGFSVGALHGDMEQSARTAALDQFRKGELPILVASDVAARGLDI 318 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P++ VI+ ++ +P++ +HR GRTGRAGR G ++ ++ Sbjct: 319 PEVSHVINFDVPHHPDDYVHRIGRTGRAGRAGTAISIV 356 >gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1] Length = 508 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/335 (36%), Positives = 180/335 (53%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+SE GY T +Q + L D+L +AQTG+GKT F L + L A A Sbjct: 19 AISESGYTTPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLPVLHRLSAAPAANPKAG 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + V GGV ++ + + L+ I+V TPG Sbjct: 79 RPRCLILTPTRELAAQVEESVRTYGKHLPTTSMVMFGGVGINPQIQALKKRVDILVATPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ K L++S ++ ++LDEAD MLD+GF DI IL PK+R+ L+FSAT S I Sbjct: 139 RLLDHVGQKTLDLSGVEILILDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATFSDEI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +LA + V +A N + VA + + +V++++ + +VF T Sbjct: 199 RSLANGLLHNPGCVEVARRNTASELVQQSVYSVAQKQKRDLLVHLVKQNDWHQVLVFTRT 258 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + ++ + LA+H A+ G SQ R+ AL +DG V +ATD+AARG+D+ L Sbjct: 259 KHGANKLAEYLAKHGIPSAAIHGNKSQSARTRALAEFKDGSLPVLVATDIAARGLDIDQL 318 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G +V + Sbjct: 319 PHVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSFV 353 >gi|328956797|ref|YP_004374183.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4] gi|328673121|gb|AEB29167.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4] Length = 423 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 182/337 (54%), Gaps = 2/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + AL E GY T +QE + + KD+L AQTG+GKT AF L + ++ E + Sbjct: 10 QHLLHALKEAGYTKATPIQEDAIPHLMNNKDLLGCAQTGTGKTAAFALPILQNIMEE--K 67 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A AL +APTRELA+Q+G + + + V GGVS + + L+ G I+ Sbjct: 68 TIGKGAIKALILAPTRELAIQIGDSFQTYAKYLPLNIQVIFGGVSQNPQTATLKRGTDIL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D IR + ++ + VLDEAD MLD+G D+ I+ PKKR+ + FSAT Sbjct: 128 VATPGRLLDLIRQGFVKLNQVDFFVLDEADMMLDMGMLRDVRHIIRELPKKRQSMFFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA + V+V + + I VA +D+ N ++ +L+ + ++ Sbjct: 188 MPSEIEKLAGTILSNPVKVVVNPVSSTVEVIQQNVYRVAKTDKTNLLIYLLKNKQVERSL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ K L + F A+ G SQ R AL+ + + V +ATD+AARGI Sbjct: 248 VFSRTKHGANKIVKKLLQAGFSAEAIHGNKSQNARQQALENFKTMKTSVLVATDIAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+P+L VI +L PE +HR GRTGRAG G ++ Sbjct: 308 DVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAI 344 >gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae] gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae] Length = 525 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 198/355 (55%), Gaps = 10/355 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + +A E + + +Q + L+ KDV+ A+TGSGKT AF L + LL RF Sbjct: 81 TLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRF 140 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA Q+G + E L + G+ V +GG+ + + L HI++ Sbjct: 141 ------FALVLTPTRELAFQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAKKPHIII 194 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +FSAT Sbjct: 195 ATPGRLVDHLENMKGFNLKSIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSAT 254 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + KD V+V ++++ + + + + + +D +V+IL + + Sbjct: 255 MTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYLFIPVKYKDVYLVHILNELAGNSFM 314 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FCST + + +L + L G++SQ +R AL + + I+TDVA+RG+ Sbjct: 315 IFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKDRSILISTDVASRGL 374 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E L Sbjct: 375 DIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLL 429 >gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster] gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster] Length = 507 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 118/385 (30%), Positives = 214/385 (55%), Gaps = 13/385 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + + + +A E + + +Q + L+ KDV+ A+TGSGKT AF L + LL Sbjct: 68 LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 127 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ AL + PTRELA Q+G + E L + G+ V +GG+ + + L H Sbjct: 128 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 181 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +F Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + KD V+V ++++ + + + + + +D +V+IL Sbjct: 242 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 301 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + + +L + L G++SQ +R AL + + I+TDVA+ Sbjct: 302 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 361 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E L + Sbjct: 362 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 421 Query: 363 ANVSVVWEPAPSVEAIRER--DAQR 385 +++ V A++ER +AQR Sbjct: 422 -QLTLYKCEEDEVMALQERVAEAQR 445 >gi|254523078|ref|ZP_05135133.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14] gi|219720669|gb|EED39194.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14] Length = 458 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/379 (34%), Positives = 200/379 (52%), Gaps = 15/379 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + L GY LT VQ L L +DV+ A TGSGKT AFGL L Sbjct: 1 MTDFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + R AL + PTRELA QVG+++ L TG+ + V Sbjct: 61 LQAIDPSLIRVQ------ALVLCPTRELADQVGKQIRKL--ATGIPNLKLLLLVGGVPLG 112 Query: 119 RDLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 L + H+VVGTPGR+ + R + LN+ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEGHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAG 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 + K R+ L+FSAT +I +A++ +DAV V + + Q I + V + R A Sbjct: 173 RTHKDRQSLLFSATFPDSIRAMARDLLRDAVEVTVEGAD-QAPAIRHLFCEVEPAHRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L + ++A+VFC+TR V L + F +AL G++ Q++R L ++ + Sbjct: 232 LAGLLLKYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ +L VI+ EL ++ E+ HR GRTGRAG G+++ ++ + Sbjct: 292 CNVLVASDVAARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKS 351 Query: 355 RAERLFREANVSVVWEPAP 373 RAE + + + W+ P Sbjct: 352 RAEAIEAQMGQPLDWQKTP 370 >gi|15896005|ref|NP_349354.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum ATCC 824] gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium acetobutylicum ATCC 824] gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium acetobutylicum EA 2018] Length = 481 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 112/370 (30%), Positives = 195/370 (52%), Gaps = 6/370 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +++ + GY +S+QE ++ L KD++ A+TGSGKT AF + + + E Sbjct: 15 ILKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAIPVCEKIELEE---- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L +APTRELA Q+ + + + G + + R+L+ HIVVG Sbjct: 71 --REPQVLVLAPTRELAYQIKEDFLNIGRFKRLRCISIFGKEPISNQIRELKQRVHIVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI LN+ +K ++DEADEML++GF + +E IL PK + +FSAT+ Sbjct: 129 TPGRVLDHIERGTLNLEKVKYFIIDEADEMLNMGFIEQVESILIKMPKNKNTFLFSATLP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L+K Y K+ + + +E + I V ++ + + ++ ++I+F Sbjct: 189 EEIVMLSKKYMKNFENIEVQNEGKTKGGIHQVYYEVESREKFDLLKKVIYKEVPGSSIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ +V + F +A+ G + Q+ R + + G IATDVAARGID+ Sbjct: 249 CRTKNNVEDVLVKMKNMKFSCMAIHGGMLQENRIAVMNAFKRGEFTFLIATDVAARGIDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ VI+ ++ E+ +HR GRTGR G KG+++ + +R + + + ++ ++ E Sbjct: 309 ENVTHVINYDIPMEKESYIHRIGRTGRMGNKGIAITFVTSKEERFLKEIEEQFSLEIIKE 368 Query: 371 PAPSVEAIRE 380 P+ E +++ Sbjct: 369 EPPTREEVKK 378 >gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria AMMD] gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD] Length = 480 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 204/382 (53%), Gaps = 9/382 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + L A Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGA 73 Query: 73 S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGVS++ + L+ G IVV T Sbjct: 74 KRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++S+L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT S Sbjct: 134 PGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +LA + + +A N + + V + + +++R H +VF Sbjct: 194 EIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDID 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE V Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEV 373 Query: 368 V--WEPAPSV--EAIRERDAQR 385 + +EP PS E I++R Q+ Sbjct: 374 IAGFEPDPSAKPEPIQQRRGQQ 395 >gi|94266535|ref|ZP_01290222.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93452836|gb|EAT03359.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 524 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/346 (34%), Positives = 189/346 (54%), Gaps = 5/346 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+V+ A+ G+ T +Q IL P L D AQTG+GK+ AF +++ + LL Sbjct: 104 FDLAPEVM-RAIQALGFEYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITRLL 162 Query: 64 AEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121 + D+ P AL +APTRELA+Q+ ++ E L +G+ GGV ++R+ Sbjct: 163 RQRADQPRALGFPQALILAPTRELAIQIHQDAEGLARFSGLRCVAVYGGVDYEKQRQRFE 222 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 Q +++ TPGRL D R K L++ ++ +V+DEAD +LD+GF D+ I+ +P+K Sbjct: 223 QEPVDLLIATPGRLLDFARQKVLSLKEVQVLVIDEADRLLDMGFIPDVRRIIQQTPEKGK 282 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L FSAT++ I++LA + V V I E ++ L ++ + N++ Sbjct: 283 RQTLFFSATLTAQISSLADQWTHKPVTVEIEPEQVAAESVEQLVYLATREEKFTILYNLI 342 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVFC+ R R L H LSGE+ QQ+R N L + G+ R+ + Sbjct: 343 VGRELERVIVFCNRRDVTRRVRDRLYRHDISCAMLSGEVGQQQRMNTLDNFKAGKIRILV 402 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RG+ + + V++ L + E+ +HR GRTGRAG+ G SV Sbjct: 403 ATDVAGRGLHVEGISHVVNYNLPEDAEDYVHRIGRTGRAGQSGTSV 448 >gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp. CCGE1001] gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001] Length = 530 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 181/337 (53%), Gaps = 2/337 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSP 71 A+ E GY T +Q + L D+L AQTG+GKT F L + L + S Sbjct: 15 AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLHSMPPLAAASG 74 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGV ++ + L++G IVV T Sbjct: 75 KRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKSGVDIVVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++SHL+ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 135 PGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA N + +A N + + V + + ++++ H +VF Sbjct: 195 EIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLVFT 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL +DG +V +ATD+AARGID+ Sbjct: 255 RTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGIDID 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 315 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 351 >gi|239813341|ref|YP_002942251.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] gi|239799918|gb|ACS16985.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] Length = 424 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/338 (37%), Positives = 190/338 (56%), Gaps = 10/338 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A +E GY T++Q A + L+ +DV SAQTGSGKT AF L L L AE PA Sbjct: 14 QAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLLQRLAAE-----PA 68 Query: 73 SAPL---ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AP AL + PTRELA QVG L L + + +A+ GGVS++ + L+ GA I Sbjct: 69 QAPRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIAIAFGGVSINPQMMSLRGGADI 128 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + L + + +VLDEAD + DLGF +++ IL P +R+ L+FSA Sbjct: 129 MVATPGRLLDLVEHNALKLGAVSTLVLDEADRLFDLGFAEELGRILALLPARRQNLLFSA 188 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T PAI LA +D +++ E I R + V + R + ++L+ + Sbjct: 189 TFPPAIQALADGTLRDPAVIDVQGEPGTEPAIVQRVIEVDANRRTQLLRHLLKENEWDRV 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF +T+ + + L ++ V G+++Q R+ L ++ R V IATD+AARG Sbjct: 249 LVFVATQHAAQTVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWDVVIATDLAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ID+ L +VI+ +L +P + +HR GRTGRAG G+++ Sbjct: 309 IDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAI 346 >gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp. SIP3-4] gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4] Length = 468 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 135/349 (38%), Positives = 198/349 (56%), Gaps = 19/349 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I AL E GY T +Q + L D++ SAQTG+GKT AF L A LLA+ Sbjct: 9 NLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLP-ALNLLAD 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 S + P L + PTRELA QV + +++ A+T +V GG+ + + L Sbjct: 68 -IHPSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIV----GGMPYPLQNKLL 122 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 I+V TPGRL DH+ +++S L+ ++LDEAD MLD+GF DIE I ++ P++R+ Sbjct: 123 SQPLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQ 182 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILR 240 LMFSAT I +AK KD + IA++ +H++I+ R V + N ++ ++L Sbjct: 183 TLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHKNKLLEHLLI 242 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLF----QVVALSGELSQQERSNALQMMRDGRAR 296 AIVF ST+ R +LAE L+ + AL G+++Q R+ L +R G R Sbjct: 243 APDVNQAIVFTSTK----RHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVR 298 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V +ATDVAARGID+ + VI+ +L E+ +HR GRTGRAG G++V Sbjct: 299 VLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAV 347 >gi|227550039|ref|ZP_03980088.1| helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227077885|gb|EEI15848.1| helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 430 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 181/340 (53%), Gaps = 2/340 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL E G + S+QE L KDV+ A+TG GKT AFG+ L + + D Sbjct: 24 IVDALHELGITHTFSIQELAAPLALAGKDVIGQARTGMGKTYAFGVPLLDRVFDDADVAE 83 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELAVQVG +L T V + GG + L +G +VVG Sbjct: 84 LDGTPRALIIVPTRELAVQVGEDLSRAAKYTPVRITTVYGGRPYEAQIAVLSSGVDVVVG 143 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L + + +VLDEADEMLDLGF DI+ + + P+ + ++FSAT+ Sbjct: 144 TPGRLIDLLNRGNLQLDRVAVLVLDEADEMLDLGFFPDIQKLWAALPQPVQAMLFSATMP 203 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAI 248 I TLA++ V + + N + R V+ D+ IL+ G I Sbjct: 204 GPILTLARSLMNRPVHIRAEAANTPSTHSTTRQVVFRSHRMDKLEVTARILQARGRGRTI 263 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF + + + + LAE F V ++ G+L Q R AL+ R G + +ATDVAARGI Sbjct: 264 VFTRMKRTAAEVARDLAERGFDVGSVHGDLGQGAREQALEAFRSGEVSILVATDVAARGI 323 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ D+ VI+ + +P +HR GRTGRAG+ G++V ++ Sbjct: 324 DVDDVTHVINFQTPDDPMTYVHRIGRTGRAGQTGIAVTLV 363 >gi|186476125|ref|YP_001857595.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia phymatum STM815] gi|184192584|gb|ACC70549.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum STM815] Length = 556 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 140/391 (35%), Positives = 205/391 (52%), Gaps = 39/391 (9%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-----------ASTL 62 AL+ GY + T VQ+ + + +D+LVS+ TGSGKT AF L AS Sbjct: 49 ALTAAGYKSPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQKVQASQP 108 Query: 63 LAEND--------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAV 107 D R P + P L + PTRELA+QV G+ L L + Sbjct: 109 REPRDNNAGGRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS------ 162 Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167 +GGV+ ++ L I+V TPGRL DH+ +++S L+ +VLDEAD MLD+GF D Sbjct: 163 ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVLDEADRMLDMGFID 222 Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227 DI+ I+ ++P R+ ++FSAT+ I +L K+ R+ I Q ++I V Sbjct: 223 DIDTIVAATPASRQTMLFSATLDGKIGSLTGRLLKEPERIEIKQHIEQRTNIAQTVHYVD 282 Query: 228 LSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286 D +D + ++LR G AIVF +T++ LA+ F+ AL G+L Q R+ Sbjct: 283 DRDHKDRLLDHLLRDSGLDQAIVFTATKSDADMLAGRLADAGFESAALHGDLPQGARNRT 342 Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346 ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAGR G +V Sbjct: 343 IRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVS 402 Query: 347 VI---PQNMQRRAERLFR---EANVSVVWEP 371 ++ Q +R ER R NV +EP Sbjct: 403 LVHHAEQGALKRIERFVRAPLPVNVVEGFEP 433 >gi|119477463|ref|ZP_01617654.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143] gi|119449389|gb|EAW30628.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143] Length = 457 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 190/338 (56%), Gaps = 8/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFS 70 +++ G+ + +Q L ++ D + AQTG+GKT AF + + + LA + +R+ Sbjct: 89 GIADLGFEYCSPIQAGTLPQTMQGHDAIGKAQTGTGKTAAFLITIINDFLANPIKEERY- 147 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129 A P AL IAPTREL VQ+G + + L TG+ VA IGG+ ++ + L IVV Sbjct: 148 -AGEPRALIIAPTRELVVQIGEDAKSLNKYTGLKVATLIGGMDYQKQLQQLSRELVDIVV 206 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187 TPGRL D L + ++ +V+DEAD MLD+GF + I+ S+P+K R+ L+FSA Sbjct: 207 ATPGRLLDFQSRGDLYLDQIEILVIDEADRMLDMGFIPQVRRIVRSTPRKESRQTLLFSA 266 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T +P + +L + + + + I ++ +D + +VA + + NI++ AK+ Sbjct: 267 TFTPEVLSLTEQWTFEPFSLEIEPDSVATDTVDQKVYIVAADQKFALLRNIVQLPDAKSI 326 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF + R + + L + + LSGE+ Q +RS LQ +DG +V +ATDVA RG Sbjct: 327 IVFANRRDQTRKLYERLRKAGIRCGILSGEIPQNKRSQTLQRFKDGDLQVLVATDVAGRG 386 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 I + + VI+ L +PE+ +HR GRTGRAG G S+ Sbjct: 387 IHVDGVSHVINYTLPEDPEDYVHRIGRTGRAGATGTSI 424 >gi|213966785|ref|ZP_03394936.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato T1] gi|301383294|ref|ZP_07231712.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato Max13] gi|302062467|ref|ZP_07254008.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato K40] gi|302133449|ref|ZP_07259439.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928635|gb|EEB62179.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato T1] Length = 442 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P S Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 I-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R K + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG+ G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLV 348 >gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+] gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+] Length = 490 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/353 (33%), Positives = 196/353 (55%), Gaps = 10/353 (2%) Query: 2 KIFENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F+++ V + EA GY T++Q+ + L+++D++ A+TGSGKT AF L + Sbjct: 62 KTFKDLGIVDSLCEACDRLGYKQPTAIQQEAIPLALQDRDIIGIAETGSGKTAAFALPIL 121 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 LL D+ P AL +APTRELA Q+ + E L + + A+ +GG+ + ++ Sbjct: 122 QALL---DKPQPL---FALVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAI 175 Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L H+VV TPGRL DH+ + KG ++ +L+ V+DEAD +LD+ F +E IL P+ Sbjct: 176 ALGKKPHVVVATPGRLLDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILKFLPR 235 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVN 237 +RR +FSAT+S + +L + +D ++VN+++ Q S + + + +D + Sbjct: 236 ERRTFLFSATMSSKVESLQRASLRDPLKVNVSTSKYQTVSTLVSNYLFIPHIHKDTYFIY 295 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + K IVF T R +L + L G LSQ R AL R G + Sbjct: 296 LCNEFAGKTMIVFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALSKFRAGTRNI 355 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +ATDVAARG+D+P+++ VI+ +L + + +HR GRT RAG+ G ++ ++ Q Sbjct: 356 LVATDVAARGLDIPNVDCVINYDLPQDSKTYIHRVGRTARAGKSGHALSIVTQ 408 >gi|126343381|ref|XP_001380653.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Monodelphis domestica] Length = 744 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/348 (34%), Positives = 194/348 (55%), Gaps = 15/348 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q +P KD++ A+TG+GKT +F + L L + + + Sbjct: 157 LKARGVTYLFPIQVKAFSPVYEGKDLIAQARTGTGKTFSFAIPLIEKLQRDQEELKKTRS 216 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV ++ + + K + VA GG + ++ G I+VGTPGR Sbjct: 217 PKVLVLAPTRELANQVAKDFQDITRK--LSVACFYGGTPYQGQINHIRRGIDILVGTPGR 274 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189 + DH++ L++S L+ VVLDE D+MLD+GF D +E I+ S K + L+FSAT Sbjct: 275 IKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGSEDNPQTLLFSATC 334 Query: 190 SPAITTLAKNYQKDAVR-VNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKN 246 + +AK Y K +++ + Q + +++ A+ S R I ++++ + + Sbjct: 335 PQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAAVIGDVIQVYSGND 394 Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+FC T+ +V+ L H+ Q L G+++Q +R L+ R+G +V +AT+V Sbjct: 395 GRAIIFCETKKNVAEM--ALNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 452 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 AARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + N Sbjct: 453 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPN 500 >gi|119773945|ref|YP_926685.1| DEAD/DEAH box helicase domain-containing protein [Shewanella amazonensis SB2B] gi|119766445|gb|ABL99015.1| DEAD/DEAH box helicase domain protein [Shewanella amazonensis SB2B] Length = 432 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 190/347 (54%), Gaps = 2/347 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL+E GY +T +Q + P R +DVL SAQTG+GKT AF L + LL + Sbjct: 10 PEIL-QALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPILQKLL-DTP 67 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A+ AL +APTREL Q+ ++ + V GG + + L+ G I Sbjct: 68 KAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQKLRKGTDI 127 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL +H+ L+++ ++ +VLDEAD MLD+GF DI+ ++ + K+R+ LMFSA Sbjct: 128 IVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACNKERQTLMFSA 187 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S + LA K + N + + V + + ++ + Sbjct: 188 TFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELLSELIGRKNWQRV 247 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF +TR + T+ L + E +Q R AL+ +G+ RV ++T+VAARG Sbjct: 248 LVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRVLVSTEVAARG 307 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 +D+PDLE V++ +L PE+ +HR GRTGRAG+ G+++ + + +R Sbjct: 308 LDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEER 354 >gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74660562|sp|Q6CT85|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3 gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis] Length = 487 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 115/346 (33%), Positives = 196/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I EA Y T +Q + P L+ D++ AQTGSGKT AF + + + L + Sbjct: 75 VPELI-EACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + A +APTRELA Q+ + L + GV +GG+S+ + RDL H Sbjct: 134 QPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184 I++ TPGRL DH+ KG N+ LK +V+DEAD +LD+ F ++ IL+ P + R + Sbjct: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 248 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIG 307 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K+ IVF T+A+ R + + F AL G+L+Q +R+ AL + + G+ + +ATDVA Sbjct: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++VI+ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 413 >gi|224370360|ref|YP_002604524.1| putative helicase of superfamily II [Desulfobacterium autotrophicum HRM2] gi|223693077|gb|ACN16360.1| putative helicase of superfamily II [Desulfobacterium autotrophicum HRM2] Length = 402 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 187/348 (53%), Gaps = 3/348 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +Q+ + LR +DVL AQTG+GKT AF L + L + R Sbjct: 15 AVAAEGYKEPTPIQDQAIPVVLRGEDVLAGAQTGTGKTAAFALPILEMLSKTSKR---TY 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L +APTRELA QV E L + V GGV + + L+ G I+V TPG Sbjct: 72 TPRCLVLAPTRELAAQVQASFESLGRSLHLRSTVVFGGVGIQPQIDKLKKGVDILVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH + L++S ++ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S I Sbjct: 132 RLLDHAGRRTLDLSKVEILVLDEADRMLDMGFIHDIKKVLKLLPGKRQNLLFSATYSTEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 A + + +++ N+ + V + + + ++R +VF T Sbjct: 192 KRFADGLLNNPKIIEVSASNKAADGVTQAVYPVQKTKKRELLSTLIRNENWTKVLVFTRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R TK L + A+ G SQ R+ AL ++G + +ATD+AARG+D+ L Sbjct: 252 KHGANRLTKQLITDGIKAAAIHGNKSQSTRTRALADFKNGSIKALVATDIAARGLDIDML 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 V++ +L + PE+ +HR GRTGRAG G+++ ++ + Q++ + + R Sbjct: 312 PHVVNYDLPNVPEDYVHRIGRTGRAGATGIALSLVCSDEQKQLKEIQR 359 >gi|157863878|ref|XP_001687490.1| nucleolar RNA helicase II [Leishmania major strain Friedlin] gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain Friedlin] Length = 674 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 204/389 (52%), Gaps = 20/389 (5%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE P V+ +AL RG ++ VQ N +R DVLV A+TGSGKT+AFG+ + LL Sbjct: 91 FEMNPIVV-KALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLL 149 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + P A+ PTRELA+QV L + G+VV GGV+ + R L++ Sbjct: 150 KLPSHLTRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLVVTALYGGVAYANQERVLRS 207 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179 G IVV TPGR D + L+ + LDEAD MLD+GF+DDIE +L ++ Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267 Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231 + L+FSAT+ + T + KD +++ + R S I + S+ Sbjct: 268 GAERPAHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326 Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 + + ++++ Y GA +VF +T+ + + L G++ Q++R + ++ Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 RD + V IATDVAARG+DLP ++LVI S+ + +HR+GRTGRAGRKG+ V + Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQ 444 Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI 378 + ER+ R A + PAP+ E I Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEI 473 >gi|84621697|ref|YP_449069.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84365637|dbj|BAE66795.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 429 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 208/386 (53%), Gaps = 16/386 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + AL+ G LT +Q A++ P L +D++V+AQTGSGKT+A+ L L L Sbjct: 11 QLPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQQRLQ- 69 Query: 66 NDRFSPASAPLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRD 120 +P P L + PTREL QV + L L A + + GG +++ + Sbjct: 70 ----APEQVPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMA 125 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GA IV+ TPGRL D + L +S ++ +VLDEAD +LDLGF +I+ IL P +R Sbjct: 126 LRGGADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPAQR 185 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++ SAT PAI +LAK +D +R+ I + I RA+ V R + ++L+ Sbjct: 186 QSVLVSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQRAIAVDAGQRTQLLRHLLQ 245 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H +VF ++R + + + L++ + + L GELSQ R L+ + +V +A Sbjct: 246 EHAWPQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVA 305 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR----- 354 TD+AARGID+ L V++ +L + + HR GRT RAG G ++ FV + Q+ Sbjct: 306 TDLAARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQQWRLIE 365 Query: 355 RAERLFREANVSVVWEPAPSVEAIRE 380 + + L +V +EP+P+ + R+ Sbjct: 366 KRQGLRVPTSVIEGFEPSPAEASARD 391 >gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354] Length = 461 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 136/400 (34%), Positives = 209/400 (52%), Gaps = 18/400 (4%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + +AL +GY T +Q + P L +D+L AQTG+GKT AF L + L E + Sbjct: 11 QPVLQALDMKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLP-SIDRLREAEN 69 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 +P + L +APTRELA Q+ + + A G+ V +GG SV+++R L G I+ Sbjct: 70 QTPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTSVNKDRNKLHRGTDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D I + + ++ +VLDEAD+MLDLGF + I + +PK R+ L FSAT Sbjct: 130 VATPGRLLDLIDQRAFTLDKVEILVLDEADQMLDLGFIHALRKINELTPKTRQTLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYH---G 243 + AI L Y ++ +V++ E+ I+ +V ++ + + IL R+ Sbjct: 190 MPKAIKDLVSQYCRNPAQVSVTPESTTAERIEQFLFMVQQDEKQSLLELILSGRHEIPGK 249 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF T+ R K LA+ A+ G SQ +R AL + + V +ATDV Sbjct: 250 LERVLVFARTKHGCDRVVKKLAQVGIPANAIHGNKSQPQRERALDEFKRAKTPVLVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR--------- 354 AARGID+P + VI+ EL + PE +HR GRT RAG G+++ ++ ++ Sbjct: 310 AARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERQYLKDIRKTT 369 Query: 355 --RAERLFREANVSVVWEP-APSVEAIRERDAQRILQDPL 391 ERL N V E P+ A +++ QR+ P+ Sbjct: 370 DAEFERLPLPDNFRAVVEGVGPTKPAPKQQRGQRVTPRPI 409 >gi|319405915|emb|CBI79547.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3] Length = 430 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 191/340 (56%), Gaps = 5/340 (1%) Query: 26 VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 +QE + L+ D+L AQTGSGKT+AF L + + +LA D+ P +A AL + PTRE Sbjct: 33 IQERAIPVMLKGHDILGIAQTGSGKTLAFSLPILNRILALGDKRHPKTAR-ALILVPTRE 91 Query: 86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145 LA+Q+ + + T + + +GG+S + R + G I+V TPGRL D IR K ++ Sbjct: 92 LAIQIEEAISAVAKGTHLSTCLILGGMSRLTQIRRMAKGVDILVATPGRLIDLIRSKYVD 151 Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205 +S + +LDEAD MLD+GF +D+ I + KK + +FSAT+S + LA N K V Sbjct: 152 LSKSRFFILDEADRMLDMGFINDVRQIANFLHKKCQTALFSATMSKEVNVLADNLLKKPV 211 Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265 ++ + S+ ++I V+ S++ + + +L + IVF T+ + LA Sbjct: 212 KIEVVSQGTTAAEITQVLYCVSTSEKKSVLGKLLTNPALASVIVFIRTKHGADSVARSLA 271 Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325 + + V + G SQ R AL+ R+G RV +ATD+AARGID+P + VI+ +L N Sbjct: 272 KTGYSVATIHGNKSQNARQRALKDFREGLVRVLVATDIAARGIDIPRISHVINYDLPDNA 331 Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERLFR 361 E+ +HR GRTGR G ++ + + +++ ERL R Sbjct: 332 ESYVHRIGRTGRNSASGDAITLFDEKIEQVRLCAIERLIR 371 >gi|330873518|gb|EGH07667.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967687|gb|EGH67947.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 442 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P S Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 I-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R K + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG+ G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLV 348 >gi|282866591|ref|ZP_06275633.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE] gi|282558493|gb|EFB64053.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE] Length = 537 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 184/346 (53%), Gaps = 10/346 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G + +QE L L DV+ A+TG+GKT+ FGL L + D R Sbjct: 32 EALEAVGITSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 91 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P AP AL + PTREL QV +L V V GG + + L+ G Sbjct: 92 ATPDRLTDAPQALIVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 151 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D + L++SH++ +VLDEADEMLDLGF D+E I+ P KR+ ++F Sbjct: 152 DVVVGTPGRLLDLAGQRKLDLSHIRVLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLF 211 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYH 242 SAT+ A+ +LA+ Y +N S + + + + V + D+ + IL+ Sbjct: 212 SATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTTQFVYRAHSMDKPEMVSRILQAE 271 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A++FC T+ + + + L F A+ G+L Q R AL+ R+G+ V + TD Sbjct: 272 SRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 331 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI+ + + LHR GRTGRAG KG ++ ++ Sbjct: 332 VAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLV 377 >gi|303288181|ref|XP_003063379.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455211|gb|EEH52515.1| predicted protein [Micromonas pusilla CCMP1545] Length = 513 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 190/336 (56%), Gaps = 12/336 (3%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AENDRFSPASAP 75 + N T VQ+ + L +D++ AQTGSGKT AF + LL A + R + P Sbjct: 73 FKNPTPVQKYAIPISLARRDLMACAQTGSGKTAAFCFPIIYGLLDRGLAGSQRGGRKTFP 132 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 LAL IAPTRELA+Q+ E +TGV V GG ++ R+++ G I+V TPGRL Sbjct: 133 LALVIAPTRELAIQIHEESRKFAYQTGVASCVIYGGAPAAQQFREMERGCDILVATPGRL 192 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPK-KRRMLMFSATISP 191 D + +++S ++ + LDEAD MLD+GF I I+ D P +R+ ++FSAT Sbjct: 193 IDLVDRAKISLSEVRYLALDEADRMLDMGFEPQIRQIVEQRDMPPTGERQTMLFSATFPR 252 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKN-AIV 249 I +A ++ KD + + + H+ I + L + D+ + +++++ H K +V Sbjct: 253 EIQRMASDFLKDYIFLTVGRVGSSHTLITQQIEYLRSYEDKKSMLMDLV--HAVKGLTLV 310 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + L+ F ++ G+ +QQER AL+ R GR + +ATDVAARG+D Sbjct: 311 FVETKRGADQLEDWLSREGFPSTSIHGDRTQQEREYALKSFRSGRTPILVATDVAARGLD 370 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +P + VI+ +L S+ ++ +HR GRTGRAG+KG++ Sbjct: 371 IPHVTHVINFDLPSDIDDYVHRIGRTGRAGKKGLAT 406 >gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21] gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21] Length = 455 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 185/342 (54%), Gaps = 6/342 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + +AL +GY T +Q + P L +D++ AQTG+GKT AF L + L + D+ Sbjct: 11 QPVLQALDIKGYTTPTPIQAQAIPPVLEGRDLMGIAQTGTGKTAAFMLP-SIDRLRDADK 69 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SP + L +APTRELA Q+ + A G+ V +GG SV+++R L G I+ Sbjct: 70 QSPFKSCRMLILAPTRELAGQIADSAKDYGALAGLKVHSIVGGTSVNKDRNKLHRGTDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D I K + ++ ++LDEAD+MLDLGF + I + P R+ L FSAT Sbjct: 130 VATPGRLLDLIDQKAFTLDKVEILILDEADQMLDLGFIHALRKISELVPDDRQTLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA-- 244 + I L Y ++ V+V++ E+ ID +V ++ + IL R+ Sbjct: 190 MPKQIQELVGKYCRNPVKVSVTPESTTAERIDQYLFMVQQDEKQTLLEMILSERHQVPGK 249 Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F T+ R K L + A+ G SQ +R AL + + + +ATDV Sbjct: 250 FERVLIFARTKHGCDRIVKKLGQSGIPANAIHGNKSQPQRERALDEFKRAKTPILVATDV 309 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + V++ EL + PE +HR GRT RAGR G+++ Sbjct: 310 AARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGRDGVAI 351 >gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas eutropha C91] gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91] Length = 455 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/352 (37%), Positives = 195/352 (55%), Gaps = 18/352 (5%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FEN+ P ++ L+ GY + T +Q+ + + DV+ SAQTG+GKT AF L Sbjct: 3 FENLNLHPAIVKAVLAA-GYTSPTPIQQQAIPELIAGHDVMASAQTGTGKTAAFMLPALH 61 Query: 61 TLLAENDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114 L +PA P L + PTRELA+QV E Y K V V +GG+ Sbjct: 62 RLA------TPAKIQGRGPRILVLTPTRELALQVS-EAASKYGKFLPRVNVVSILGGMPY 114 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + L ++V TPGRL DHI ++ S L+ +VLDEAD MLD+GF D+E I Sbjct: 115 PLQNKLLSQVVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIHDVERIAS 174 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDN 233 S+P R+ L+FSAT+ AI +A K R+ IAS++ + I+ R V L+ ++ Sbjct: 175 STPTNRQTLLFSATLDTAIEKIATRLLKMPKRIQIASQHAKLDHIEQRMHYVDDLTHKNR 234 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + ++L K AIVF +T+ L+ + A+ G+++Q+ER+ L +R G Sbjct: 235 LLDHLLCDTTIKQAIVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQG 294 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R ++ +ATDVAARGID+ D+ VI+ +L E+ +HR GRTGRAG G++V Sbjct: 295 RLKILVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAV 346 >gi|209518298|ref|ZP_03267123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] gi|209501217|gb|EEA01248.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160] Length = 443 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 183/339 (53%), Gaps = 8/339 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY + T +Q + L D+L AQTG+GKT F L + L + PA+ Sbjct: 15 AVNELGYTSPTPIQTQAIPAVLDGGDLLAGAQTGTGKTAGFTLPILQRL----NSMPPAA 70 Query: 74 APL----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA QV + + V GGV ++ + L+ G IVV Sbjct: 71 GGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKRGVDIVV 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT Sbjct: 131 ATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATF 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + +A N + + V + + +++R H +V Sbjct: 191 SDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIRQHNWFQVLV 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R + L + +A+ G SQ R+ AL +DG +V +ATD+AARGID Sbjct: 251 FTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGID 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 311 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 349 >gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans] gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans] Length = 519 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 118/385 (30%), Positives = 214/385 (55%), Gaps = 13/385 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + + + +A E + + +Q + L+ KDV+ A+TGSGKT AF L + LL Sbjct: 72 LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 131 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ AL + PTRELA Q+G + E L + G+ V +GG+ + + L H Sbjct: 132 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 185 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +F Sbjct: 186 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 245 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + KD V+V ++++ + + + + + +D +V+IL Sbjct: 246 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 305 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + + +L + L G++SQ +R AL + + I+TDVA+ Sbjct: 306 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSILISTDVAS 365 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E L + Sbjct: 366 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 425 Query: 363 ANVSVVWEPAPSVEAIRER--DAQR 385 +++ V A++ER +AQR Sbjct: 426 -QLTLYKCEEDEVMALQERVAEAQR 449 >gi|212634102|ref|YP_002310627.1| DEAD box family ATP-dependent RNA helicase [Shewanella piezotolerans WP3] gi|212555586|gb|ACJ28040.1| ATP-dependent RNA helicase, DEAD box family [Shewanella piezotolerans WP3] Length = 422 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 182/342 (53%), Gaps = 5/342 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 + ++GY T +Q A + L KD++ SAQTG+GKT AF L + L A + Sbjct: 29 IKQKGYNEPTPIQTAAIPVILSGKDLMASAQTGTGKTAAFTLPILQKL-AMQSAGKETDS 87 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL + PTRELAVQV + + T + V GGVS+ + L G IVV TPGR Sbjct: 88 IRALILVPTRELAVQVNKSVTEYGVNTALKSMVIYGGVSIDAQASSLAAGVDIVVATPGR 147 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L DH+R L++ + +V DEAD MLD+GF D+I IL P +R+ L+FSAT S AI Sbjct: 148 LLDHLRRGSLSLMAIDTLVFDEADRMLDMGFMDEINAILKQLPTERQTLLFSATFSDAIY 207 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCS 252 L+K VR+ + N ++ + V SDR A+++ L +YH + ++F Sbjct: 208 RLSKKLLSKPVRIEVDKANSAADSVE-QIVYAVDSDRKAALISHLINKYHW-QQVLIFSR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + + T L A G+LSQ R L + G + +ATDVAARG+D+ + Sbjct: 266 KKQTADTITSKLVAAGVAAKAFHGDLSQGAREQVLNDFKAGNIKALVATDVAARGLDIVE 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 L V++ E+ E+ +HR GRTGRAG G ++ + ++ R Sbjct: 326 LNYVVNYEIPFVAEDYIHRIGRTGRAGNSGKAITLYSEDDAR 367 >gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4] gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4] Length = 472 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LL+ R Sbjct: 12 ILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE-LLSNGPRVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA QV + + AV GGV ++ + + L+ GA ++V Sbjct: 71 -ANHVRALILTPTRELAAQVQESVFTYSQHLPLNSAVVFGGVKINPQMQRLRKGADVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI ILD PK+R+ L+FSAT S Sbjct: 130 TPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILDLLPKQRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N ++ + +V +++ + +VF Sbjct: 190 DEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPSDAKKKAPMLVKLIKEGDWRQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L + A+ G SQ R+ AL + G RV +ATD+AARGID+ Sbjct: 250 TRTKHGANRLAKFLIDEKLPAAAIHGNKSQSARTKALADFKSGAIRVLVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKVAEDYVHRIGRTGRAGEMGKAISLV 347 >gi|212274773|ref|NP_001130659.1| hypothetical protein LOC100191761 [Zea mays] gi|194689766|gb|ACF78967.1| unknown [Zea mays] Length = 598 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 109/318 (34%), Positives = 181/318 (56%), Gaps = 8/318 (2%) Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132 P L +APTRELA QV +E++ K G V C+ GGVS + ++ L G +VVGTP Sbjct: 19 TPRVLVLAPTRELAKQVEKEIKESAPKLGTV---CVYGGVSYNVQQNALSRGVDVVVGTP 75 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I G L + ++ +VLDEAD+ML +GF +D+E IL P R+ ++FSAT+ Sbjct: 76 GRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGRQSMLFSATMPSW 135 Query: 193 ITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIV 249 + L++ Y + + +++ + + I A+ + + + + +++ Y IV Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLITVYAKGGKTIV 195 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + L + AL G++SQ +R L R G+ V +ATDVAARG+D Sbjct: 196 FTRTKKDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 254 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 +P+++L+IH EL ++PE +HRSGRTGRAG+ G ++ + + +R + L R+ + + Sbjct: 255 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLERDVGCNFEF 314 Query: 370 EPAPSVEAIRERDAQRIL 387 PS+E + E A+ ++ Sbjct: 315 ISPPSIEEVLESSAEHVI 332 >gi|317051436|ref|YP_004112552.1| DEAD/DEAH box helicase domain-containing protein [Desulfurispirillum indicum S5] gi|316946520|gb|ADU65996.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum S5] Length = 522 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 189/343 (55%), Gaps = 3/343 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + A+ + G+ T +QE +L + KD + AQTG+GK+ AF + + LL+ Sbjct: 112 NLPEELMHAIYDLGFAYCTPIQEQVLPRAIEGKDAIGKAQTGTGKSAAFLMTIICRLLSR 171 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P AL +APTRELA+Q+ ++ L T + + GG+ ++++R+ L+N A Sbjct: 172 PQEKASIGRPRALILAPTRELAMQISKDAHDLCRYTPLKIVTLFGGMDMNKQRQRLENEA 231 Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PKK-RRM 182 IVV TPGRL D K + + ++ +V+DEAD MLD+GF D+ I++S+ PK R+ Sbjct: 232 VDIVVATPGRLLDLKYQKCVFLGKVEILVIDEADRMLDMGFIPDVRQIVNSTMPKHLRQT 291 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+S +T LA + + V I E +D + ++ + N + Sbjct: 292 LLFSATLSNEVTRLASAWMTEPFMVEIEPEQVTVETVDQLVYITTREEKFTLLWNTINQA 351 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVF + R ++ L + LSGE+ Q +R L+ R+G+ V +ATD Sbjct: 352 NLTRVIVFANRRDETRHLSEKLTRYGVTNAILSGEVPQAKRIRTLENFREGKIAVLVATD 411 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VA RGI + + VI+ L NPE+ +HR GRTGRAG G+SV Sbjct: 412 VAGRGIHVDSISHVINYNLPENPEDYVHRIGRTGRAGASGISV 454 >gi|161784286|sp|Q5ACU6|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3 Length = 539 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 196/346 (56%), Gaps = 10/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ E++ + T +Q + L KD++ AQTGSGKT AF + + +L Sbjct: 131 VPDLL-ESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQ 189 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL +APTREL Q+ + L + G+ + +GG+ + + RDL H Sbjct: 190 QPY------FALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH 243 Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGR+ DH+ KG ++ +LK +V+DEAD +LD+ F ++ IL P KR +F Sbjct: 244 VIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLF 303 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ I L + + VRV ++S+ + ++ +LV ++ ++++L K Sbjct: 304 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGK 363 Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF T A R T +LA L F V L G+LSQ +R +L + +A + +ATDVA Sbjct: 364 SIIVFTRTVAHAQR-TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVA 422 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++VI+ ++ ++ + +HR GRT RAGR G S+ +I Q Sbjct: 423 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 468 >gi|74317751|ref|YP_315491.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] gi|74057246|gb|AAZ97686.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259] Length = 477 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 193/364 (53%), Gaps = 3/364 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A+++ GY T +Q + L D+L +AQTG+GKT F L + L Sbjct: 16 ILRAIADAGYTAPTPIQAQAIPHVLAGGDLLAAAQTGTGKTAGFTLPILHQLSTRAAVAP 75 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L + PTRELA QV ++ + V GGV+++ + + L+ I+V Sbjct: 76 KPGRPRCLILVPTRELAAQVEESVKTYGKYLSLTSMVMFGGVNINPQFKALKARVDILVA 135 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ K +++S ++ +VLDEAD MLD+GF DI +L PK+R+ L+FSAT S Sbjct: 136 TPGRLLDHVAQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAVLPKQRQNLLFSATFS 195 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I TLA + V +A N ++ V + + + + +++++H + +VF Sbjct: 196 DEIRTLANGLLNNPKSVEVARRNTTAEVVEQSMHRVPQAHKRDLLAHLIKHHDWQQVLVF 255 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ + L + A+ G SQ R+ AL +DG R +ATD+AARGID+ Sbjct: 256 TRTKHGANKLAEKLNKDGITAAAIHGNKSQSARTKALASFKDGSVRALVATDIAARGIDI 315 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367 L V++ EL + PE+ +HR GRTGRAG G ++ ++ R E+L + A V V Sbjct: 316 DQLPQVVNFELPNVPEDYVHRIGRTGRAGATGSALSLVDDEEMGYLRDIEKLIKRAIVRV 375 Query: 368 VWEP 371 EP Sbjct: 376 EIEP 379 >gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria IOP40-10] Length = 472 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 204/382 (53%), Gaps = 9/382 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + L A Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGA 73 Query: 73 S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGVS++ + L+ G IVV T Sbjct: 74 KRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++S+L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT S Sbjct: 134 PGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +LA + + +A N + + V + + +++R H +VF Sbjct: 194 EIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDID 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE V Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEV 373 Query: 368 V--WEPAPSV--EAIRERDAQR 385 + +EP PS E I++R Q+ Sbjct: 374 IAGFEPDPSAKPEPIQQRRGQQ 395 >gi|331018940|gb|EGH98996.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 442 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P S Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 I-RALVLAPTRELADQVHESIRQYAENLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R K + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG+ G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLV 348 >gi|323499382|ref|ZP_08104358.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] gi|323315567|gb|EGA68602.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] Length = 477 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 184/339 (54%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +QE + L+ KDV+ +AQTG+GKT F L + L +N Sbjct: 12 ILKAIEEQGYDKPSPIQEQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILERL--DNGTRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNGAHIVV 129 + AL + PTRELA QV +E + Y++ + + V GGV + + L+ G ++V Sbjct: 70 KGNHVRALVLTPTRELAAQV-QENVFKYSRYQRLTSQVIFGGVKANPQMMKLRKGCDVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + + L+ +VLDEAD MLD+GF DI IL P KR+ L+FSAT Sbjct: 129 ATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 SP I LAK D V V+++ EN I+ + +V +++ K +V Sbjct: 189 SPEIRELAKGLVNDPVEVSVSKENSTAVTIEQSIYPADKRKKAPMLVKMIKDGDWKQTLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ +R L + + G SQ R+ AL + G +V +ATD+AARGID Sbjct: 249 FCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVKVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL + E+ +HR GRTGRAG G + ++ Sbjct: 309 IPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAYSLV 347 >gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia ambifaria MC40-6] gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MC40-6] Length = 479 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 204/382 (53%), Gaps = 9/382 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + L A Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGA 73 Query: 73 S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGVS++ + L+ G IVV T Sbjct: 74 KRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++S+L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT S Sbjct: 134 PGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +LA + + +A N + + V + + +++R H +VF Sbjct: 194 EIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDID 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE V Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEV 373 Query: 368 V--WEPAPSV--EAIRERDAQR 385 + +EP PS E I++R Q+ Sbjct: 374 IAGFEPDPSAKPEPIQQRRGQQ 395 >gi|114327981|ref|YP_745138.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1] gi|114316155|gb|ABI62215.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1] Length = 763 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 190/336 (56%), Gaps = 3/336 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + A++E GY++ T +Q + L +DVL AQTG+GKT +F L + L +DR Sbjct: 232 EPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDIL---SDR 288 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + A P +L + PTRELA+QV + A+ IGG S++ +R L G ++ Sbjct: 289 RARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLIGGESMNDQRDVLSKGVDVL 348 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D GL ++ + +V+DEAD MLD+GF D+E I+ P R+ L FSAT Sbjct: 349 IATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTLFFSAT 408 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++P I LA + ++ + +A + I LV D+ A+ ++LR +NA+ Sbjct: 409 MAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKALRHLLRQEKVQNAL 468 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ + V TK L +H F L G+L+Q R + L+ + G ++ + +DVAARGI Sbjct: 469 IFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCSDVAARGI 528 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 D+ L V + ++ + E+ +HR GRTGRAGR+G + Sbjct: 529 DIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAA 564 >gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis] gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis] Length = 518 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 198/355 (55%), Gaps = 10/355 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + +A E + + +Q + L+ KDV+ A+TGSGKT AF L + LL R+ Sbjct: 79 TLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESPQRY 138 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA Q+G + E L + G+ V +GG+ + + L HI++ Sbjct: 139 ------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIII 192 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +FSAT Sbjct: 193 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSAT 252 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + KD V+V ++++ + + + + + +D +V+IL + + Sbjct: 253 MTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFM 312 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FCST + + +L + L G++SQ +R AL + + I+TDVA+RG+ Sbjct: 313 IFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGL 372 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E L Sbjct: 373 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRIEHLL 427 >gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura] gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura] Length = 518 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 198/355 (55%), Gaps = 10/355 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + +A E + + +Q + L+ KDV+ A+TGSGKT AF L + LL R+ Sbjct: 79 TLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESPQRY 138 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA Q+G + E L + G+ V +GG+ + + L HI++ Sbjct: 139 ------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIII 192 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +FSAT Sbjct: 193 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSAT 252 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + KD V+V ++++ + + + + + +D +V+IL + + Sbjct: 253 MTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFM 312 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FCST + + +L + L G++SQ +R AL + + I+TDVA+RG+ Sbjct: 313 IFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGL 372 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E L Sbjct: 373 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRIEHLL 427 >gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199] gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199] Length = 521 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 183/329 (55%), Gaps = 3/329 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T +QE + L +DVL AQTG+GKT +F L + L A + A Sbjct: 20 AVVTSGYTKPTPIQEKAIPYVLMGRDVLGCAQTGTGKTASFTLPMIDILSAGRAK---AR 76 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P +L IAPTRELA QV T + +A+ IGGVS+ + L G +++ TPG Sbjct: 77 MPRSLIIAPTRELAAQVSENFVKYGQNTRLSMALLIGGVSMGDQEAKLDRGVDVLIATPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH + ++ +K +V+DEAD MLD+GF D+E I+ P R+ L FSAT++P I Sbjct: 137 RLLDHFERGRILLTDVKILVIDEADRMLDMGFIPDVERIVSLLPTIRQTLFFSATMAPEI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + + V++ + ++ V ++ D+ +A+ ++L+ +A++FC+ Sbjct: 197 KRLADKFLMNPKEVSVDAPASAAENVAQHLVRCSVKDKRDALRSLLKSETVDSALIFCNR 256 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + V L G++SQ R+ L + G AR+ I +DVAARGID+ L Sbjct: 257 KRDIGVLHRSLQRYGIEAVQLHGDMSQPARTETLAKFKAGEARLVICSDVAARGIDIKGL 316 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG 342 V + ++ S+ E+ +HR GRTGRAG G Sbjct: 317 SHVFNFDVPSHAEDYVHRIGRTGRAGLSG 345 >gi|149184420|ref|ZP_01862738.1| DNA and RNA helicase [Erythrobacter sp. SD-21] gi|148831740|gb|EDL50173.1| DNA and RNA helicase [Erythrobacter sp. SD-21] Length = 359 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 116/331 (35%), Positives = 183/331 (55%), Gaps = 5/331 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E GY T +Q + P L KD++ AQTG+GKT +F L + + + R A Sbjct: 14 KAVEEAGYTEPTPIQAQAIPPILMMKDIIGIAQTGTGKTASFVLPMIDVMASGRRR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L +APTRELA QV E + +A+ IGGV + + + L G +++ TP Sbjct: 71 LMPRSLILAPTRELAAQVAENFEKYGKNHDLKLALLIGGVQMGDQIKALNEGVDVLIATP 130 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL D RGK L ++ + +V+DEAD MLD+GF DIEFI P++R+ ++FSAT+ P Sbjct: 131 GRLMDLFERGKIL-LNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQTMLFSATMPP 189 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LAK + + R+ ++ + DI + V + + +LR + AI+F Sbjct: 190 PIEKLAKKFLDNPKRIEVSRAATTNKDITAFKIPVESRKKRETLRWLLRNDHVETAIIFA 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + + +V K L +H F + G++ Q R L ++G + +A+DVAARG+D+ Sbjct: 250 NRKTTVRELNKSLQQHGFASSEIHGDMDQSSRIKELDRFKNGEVNILVASDVAARGLDVK 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + V + + +P++ +HR GRTGRAG KG Sbjct: 310 GVSHVFNFDTPWHPDDYVHRIGRTGRAGAKG 340 >gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 442 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 189/338 (55%), Gaps = 3/338 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A G+ N T +Q + L KD++ AQTGSGKT AF L + +LL +++ Sbjct: 23 ACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTGAFALPILQSLLEASEK--SVQ 80 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A A ++PTRELA+Q+ + E L + GV AV +GGV + ++ L HIVV TPG Sbjct: 81 AFFACVLSPTRELAIQIAEQFEALGSDIGVKCAVLVGGVDMVQQSIALGKRPHIVVATPG 140 Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 RL DH+ KG ++ LK +VLDEAD +L+ F ++ IL P++RR +FSAT++ Sbjct: 141 RLVDHLSNTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILKVIPRERRTFLFSATMTKK 200 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L + ++ V++ AS+ + + +D +V IL ++VF Sbjct: 201 VKKLQRACLRNPVKIEAASKYSTVDTLKQEYRFIPAKYKDCYLVYILTEKSGSTSMVFTR 260 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T + + VL + + ++G ++Q +R AL + G + I TDVA+RG+D+P Sbjct: 261 TCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALNKFKAGECNILICTDVASRGLDIPS 320 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ +N ++ +HR GRT RAGR G+++ ++ Q Sbjct: 321 VDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQ 358 >gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 479 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 138/418 (33%), Positives = 218/418 (52%), Gaps = 17/418 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q + L D++ +QTG+GKT A+ L L + +N Sbjct: 16 QHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLERMDTKNPNVQ-- 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV ++ + + GG S+ R+ R L+ G IVVGTP Sbjct: 74 ----ALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEKGVQIVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + K L++ L VVLDEADEML +GF DD++ IL +SP R+ FSAT+ Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTACFSATMPRE 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251 I L N+ K + V ++ + I+ + ++ + + +L ++AI+F Sbjct: 190 IRDLIANFLKSPISVTVSQPQAAPAKIEQKIYMIPRGWTKLKVLQPLLEIEPLESAIIFV 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + T L E V G LSQ +R +Q R+G+ ++ +ATD+AARG+D+ Sbjct: 250 RTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVE 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRRAERLFREANVSVV 368 +L VI+ +L N E +HR GRTGRAG+ G ++ + I + + R+ E+ R+ S Sbjct: 310 NLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQRLRQRLES-- 367 Query: 369 WEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423 P PS VEA R Q L++ L + + +V L ++DP+ IAA L++ Sbjct: 368 -SPIPSRTEVEAKRLAKLQNQLKEALSGERM-ASFLPLVRDLSEEYDPQAIAAAALQM 423 >gi|311106059|ref|YP_003978912.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8] gi|310760748|gb|ADP16197.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8] Length = 462 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 132/403 (32%), Positives = 212/403 (52%), Gaps = 18/403 (4%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P + + + L G+ +T +Q L L +D++ A+TGSGKT AFGL + Sbjct: 6 FTSLPLLPALLDNLKSLGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQK 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120 L + R +P AL + PTRELA QV +EL L + V + GG + + Sbjct: 66 L--DPTRLTPQ----ALLVCPTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAES 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G H+VVGTPGR+ DH+ L++S L +VLDEAD M+D+GF DDI I P KR Sbjct: 120 LARGTHLVVGTPGRIQDHLERGSLDLSGLNTLVLDEADRMVDMGFYDDIVAIASHCPTKR 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNI 238 + L+FSAT I L+ + ++ V + + QH + + D+D +A+ + Sbjct: 180 QTLLFSATYPDNIRKLSARFLRNPAEVKVEA---QHDASRIEQIFYEIDDKDRLDAVTRL 236 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + ++ + FC+T+ + L AL+G+L Q+ER L + V Sbjct: 237 LAHFRPESTLAFCNTKIRSHDLVERLQAEGISAQALNGDLEQRERDEILIQFANRSCAVL 296 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARG+D+ +L VI+ +++ + E +HR GR+GR +KG+++ + R A Sbjct: 297 VATDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGEQKGLALSLCSPEEMRWANL 356 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 + + +VW ++ +R + A R L+ P+ IQG +K Sbjct: 357 IEQYQGAPLVWG---DIKTLRPK-ADRPLRAPMITLCIQGGKK 395 >gi|304392205|ref|ZP_07374147.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130] gi|303296434|gb|EFL90792.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130] Length = 536 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 185/345 (53%), Gaps = 4/345 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G + T +Q + L +DV+ AQTG+GKT AFGL L LL++ D+ P S AL Sbjct: 53 GLKDPTPIQTNAIPLVLEGRDVMGLAQTGTGKTAAFGLPLIDRLLSDGDKVQPRSV-RAL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTREL Q+ L KT V V+ +GG +++ + R L G ++V TPGRL D Sbjct: 112 ILAPTRELVNQIADNLRAYVKKTPVWVSSVVGGQNINTQIRHLAKGTDVLVATPGRLLDL 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 + K + + K +VLDEAD+MLD+GF + I + R+ L+FSAT+ + L+K Sbjct: 172 VDRKAVKLDTAKYLVLDEADQMLDMGFIHALRRIEPLLGRPRQTLLFSATMPKLVEELSK 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +Y + R+ +A + + +A D+ N + +L ++VF T+ Sbjct: 232 SYLTNPERIEVARAGKAADKVRQSVHYIATKDKLNLLSKLLAERPDDLSLVFGRTKHGCE 291 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + K L F ++ G SQ +R AL+ + G R+ +ATDVAARGID+P + V + Sbjct: 292 KLMKQLVAQGFAAASIHGNKSQGQRDRALREFKSGAVRILVATDVAARGIDIPAVSHVYN 351 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLF 360 L PEN +HR GRT RAGR G +V F P + M R +RL Sbjct: 352 FNLPEVPENYVHRIGRTARAGRDGEAVAFCAPDERKMLRDIQRLM 396 >gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus 273-4] gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus 273-4] Length = 567 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 199/347 (57%), Gaps = 18/347 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I AL GY + T +Q + L+ +D+L+SAQTGSGKT AF + + Sbjct: 50 NIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVL------ 103 Query: 66 NDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERR 119 DR S A++ AL + PTRELA QV + Y+K G+ +GG + + Sbjct: 104 -DRLSRATSFDKLTKALILTPTRELAQQVHDSVR-TYSKDMRGLFCVPLVGGAPYNGQIT 161 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G ++V TPGRL DHI +++S L+ +VLDEAD MLD+GF DDI IL ++P Sbjct: 162 ALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPID 221 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-I 238 R+ +M SAT + +A ++ K+ RV+I E+ + I+ + D N +++ I Sbjct: 222 RQTIMCSATWDGPVGKIAASFTKNPERVSIKVES---AHIEEKVYYCDDFDHKNRLLDKI 278 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + + + I+F +T+ S + K L E + L G+L Q +R+ +Q +R+G+ ++ Sbjct: 279 VCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKIL 338 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+D+P L VI+ +L E+ +HR GR GRAGR G+++ Sbjct: 339 VATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAI 385 >gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS] gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS] Length = 414 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/377 (34%), Positives = 196/377 (51%), Gaps = 10/377 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+E GY + T +Q+ + L D+L AQTG+GKT AF L + L R Sbjct: 14 KALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVLQRL--HQSRMHGE 71 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + L + PTRELA+Q+G TG++ V GGV+ + + L G I+V T Sbjct: 72 KRKIRCLVLTPTRELAIQIGESFTAYGRHTGLINTVIFGGVNQNPQTARLVRGVDILVAT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D I L++ ++ VLDEAD MLD+GF DI +L PKKR+ L FSAT+ P Sbjct: 132 PGRLLDLIGQGHLHLRDIEYFVLDEADRMLDMGFIHDIRRVLAVLPKKRQSLFFSATMPP 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L+ + V + + I+ + + V ++++ + ++L+ ++A+VF Sbjct: 192 EIIKLSAAILHNPKEVMVTPVSSTVEIINQQILFVDRENKNSLLAHLLKERNIESALVFT 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + LA H A+ G SQ R AL + + RV +ATD+AARGID+ Sbjct: 252 RTKHGADKVARFLAHHDITAEAIHGNKSQNARQRALGNFKTRQTRVLVATDIAARGIDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFREANVS 366 +LE VI+ +L + PE +HR GRTGRAG +G + N + +A E+L Sbjct: 312 ELEYVINIDLPNIPETYVHRIGRTGRAGNRGAAYSFC--NAEEKAYLRDIEKLIARKIPV 369 Query: 367 VVWEPAPSVEAIRERDA 383 + P P V I E A Sbjct: 370 IEDHPFPMVNTIPENAA 386 >gi|262278447|ref|ZP_06056232.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus RUH2202] gi|262258798|gb|EEY77531.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus RUH2202] Length = 383 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 118/352 (33%), Positives = 199/352 (56%), Gaps = 8/352 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVINDLLHN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + RF P AL +APTRELA+Q+ + + L + + V +GGV ++++ L Sbjct: 69 PIQEQRFR--GEPRALILAPTRELALQIESDAKLLTKFSDLHVVTLLGGVDFDKQKKQLD 126 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEE 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + + V I E + ++D++ R +VA D+ + +IL Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L ++V LSGE++Q +R L + G+ + I Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLDQFKQGKNNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ATDVA RGI + + V++ L ++ +HR GRTGRAG +G+S+ + ++ Sbjct: 307 ATDVAGRGIHVDGVSHVVNYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSED 358 >gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae] Length = 469 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 196/355 (55%), Gaps = 10/355 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ +A + + + +Q + L+ KD++ A+TGSGKT AF L + LL R Sbjct: 49 VLCKACEQLKWKTPSKIQRESIPVALQGKDIIGLAETGSGKTAAFALPILQALLENPQRH 108 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA Q+ + E L + GV V +GG+ + + L HI++ Sbjct: 109 ------FALILTPTRELAFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPHIII 162 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P++RR +FSAT Sbjct: 163 ATPGRLVDHLSNTKGFNLRALKFLVMDEADRILNMDFEAEVDKILKVIPRERRTFLFSAT 222 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + +D VRV ++++ + + V + +D +V+IL + + + Sbjct: 223 MTKKVNKLQRACLQDPVRVEVSTKYQTVEKLLQYYVFIPAKFKDVYLVHILNENAGNSFM 282 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFCST + R +L F V L G++SQ +R AL + + I+TDVA+RG+ Sbjct: 283 VFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNRSILISTDVASRGL 342 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 D+P +++VI+ ++ + ++ +HR GRT RAGR G ++ + Q + +R E L Sbjct: 343 DIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLI 397 >gi|323497187|ref|ZP_08102207.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] gi|323317762|gb|EGA70753.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] Length = 419 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 185/346 (53%), Gaps = 1/346 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65 + Q + L+ G+ T VQ+ + L KDVL AQTG+GKT AFGL + L+ +E Sbjct: 10 LSQPLLTTLNTLGFTTPTQVQQQSIPHILLGKDVLAGAQTGTGKTAAFGLPIIQQLIQSE 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + R + AL + PTRELA QV L T + + GG S++ + R+L G Sbjct: 70 SVRDPQGNDVRALVLVPTRELAQQVYDNLVQYAESTPLKIVTAYGGTSINVQTRNLHQGC 129 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ K ++++ + +VLDEAD MLD+GF DI+ IL +R+ L F Sbjct: 130 DILIVTPGRLIDHMFCKNVSLAKTEYLVLDEADRMLDMGFMPDIQRILKRFNPERQTLFF 189 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I +A QKD + + ++ N + V + + ++ + Sbjct: 190 SATFDKRIKNIAYKLQKDPIEIQVSPSNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQ 249 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ K L + +++G+ SQ R AL + G+ R IATDVAA Sbjct: 250 QVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAA 309 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 RG+D+ LE V++ ++ E+ +HR GRTGRAG++G +V ++ Q+ Sbjct: 310 RGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSQD 355 >gi|146284249|ref|YP_001174402.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501] gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri A1501] gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166] Length = 609 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/345 (33%), Positives = 186/345 (53%), Gaps = 6/345 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---- 64 + + A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L Sbjct: 10 EALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLELLFPGGHP 69 Query: 65 -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 R+ P P L + PTRELA QV + + AV GGV ++ + + + Sbjct: 70 DREHRYGPKQ-PRVLVLTPTRELAAQVHDSFKVYARDLPLKSAVIFGGVGMNPQIQAVAK 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G ++V PGRL D K +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L Sbjct: 129 GIDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPAKRQNL 188 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S IT LA ++ R+ + N I+ R VA S + + +++ Sbjct: 189 LFSATFSKDITDLAAKLLQNPERIEVTPPNTTVERIEQRVFRVASSHKRALLAHLITQGA 248 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF T+ +R + L +H A+ G SQ R+ AL + + R+ +ATD+ Sbjct: 249 WEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQVRILVATDI 308 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARG+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 309 AARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353 >gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102] Length = 478 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA Y T +QE + L+ +D++ A+TGSGKT AF L + LL D+ P Sbjct: 70 EACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPILQALL---DKPQPL 126 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+G+ E L + + AV +GG+ + + L HI+V TP Sbjct: 127 ---FGLVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGKKPHIIVATP 183 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ + KG ++ LK +V+DEAD +LD+ F I+ +L P++RR +FSAT+S Sbjct: 184 GRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTYLFSATLSS 243 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKNAIVF 250 + +L + +D VRV+++S Q + +LV R D ++ ++ K+ I+F Sbjct: 244 KVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVIPQMRKDTYLIYLVNEFTGKSTIIF 303 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 304 TRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVAARGLDI 363 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++V++ +L + + +HR GRT RAG+ G+++ ++ Q Sbjct: 364 SKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQ 403 >gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum] gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum] Length = 780 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/344 (34%), Positives = 191/344 (55%), Gaps = 8/344 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ T +Q + L KD+L SA TGSGKT AF L + LL R S Sbjct: 195 KAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKTAAFLLPILERLLF---RDSEY 251 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A L + PTRELA+Q LE L + + + +GG+S + +L+ +V+ TP Sbjct: 252 RAIRVLVLLPTRELALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVELRKRPDVVIATP 311 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ G+ + L+ ++LDEAD +LD+GF+D+I I+DS P R+ ++FSAT++ Sbjct: 312 GRLIDHLLNAHGIGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTSRQTMLFSATLND 371 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNIL-RYHGAKNA 247 + TLAK + +RV + + + S +D V + LSDR ++++ R Sbjct: 372 EVKTLAKLSLQQPIRVQVDALFQVASTLDQEFVKIKSQHLSDRPAILMSLCTRVFNTGGT 431 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC ++ V R + + L G LSQ++R ++LQ RDG+ +A+DVA+RG Sbjct: 432 IIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGKVNYLLASDVASRG 491 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +D+ ++ VI+ + + +HR GRT RAG +G S I +N Sbjct: 492 LDIIGVKTVINYNMPNTLAQYIHRVGRTARAGMEGKSCSFITEN 535 >gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1] gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 463 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 182/339 (53%), Gaps = 2/339 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T +Q+ + L D+L AQTG+GKT AFGL L L E + P Sbjct: 15 ALAEQGYETPTPIQQQAIPLALAGHDLLAGAQTGTGKTAAFGLPLLQYLGTEPQKVGPGP 74 Query: 74 -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTRELA QV L + AV GGV + + L+ G +V+ P Sbjct: 75 RKPRALVLTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDSLRRGVDMVIACP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISP 191 GRL DHI + +++S ++ ++LDEAD MLD+GF I+ IL PK+ R+ L+FSAT Sbjct: 135 GRLIDHIERRSIDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFPE 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 +I LA + ++ V + +N I +R V + + ++++L +VF Sbjct: 195 SIKQLAMEFMRNPREVQVTPQNTVAETIAHRVHPVDTARKRELLLHLLGQDARVQTLVFA 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + Q A+ G SQ +R AL + G+ +V +ATD+AARGID+ Sbjct: 255 KTKHGSDKLATHLEKAGIQAAAIHGNKSQGQRLRALGDFKSGKVKVLVATDIAARGIDID 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 L VI+ +L E+ +HR GRTGR G G ++ ++ Q Sbjct: 315 QLPRVINYDLPMVAEDYVHRIGRTGRNGANGEALSLVSQ 353 >gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina 98AG31] Length = 486 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 185/328 (56%), Gaps = 7/328 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q + L+ KD++ AQTGSGKT AF L + +L + SA A +APT Sbjct: 83 TPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVLQSL------WDSPSAFFACVLAPT 136 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGK 142 RELA Q+ ++ + L + GV V +GG+ + + L H++V TPGRL DH+ K Sbjct: 137 RELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALSKRPHVIVATPGRLHDHLEHTK 196 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G ++ +L+ +++DEAD +LD+ F I+ IL PK+R+ +FSAT++ + L + Sbjct: 197 GFSLRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERKTYLFSATMTTKVAKLQRASLN 256 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 + V+V ++++ S + + + +D +V + K+ IVF T SR + Sbjct: 257 NPVKVEVSAKYDTVSALVQTYLFLPFKHKDTYLVYLANELSGKSLIVFTRTVHDASRLSL 316 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 +L F V L G+LSQ R AL + G + +ATDVA+RG+D+P ++ VI+ +L Sbjct: 317 ILRTLGFPAVPLHGQLSQSARLGALNKFKSGDQSLLVATDVASRGLDIPAVDCVINFDLP 376 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +N ++ +HR GRT RAGR G S+ ++ Q Sbjct: 377 TNSKDYIHRVGRTARAGRSGKSITLVTQ 404 >gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3 [Macaca mulatta] Length = 455 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 109/345 (31%), Positives = 190/345 (55%), Gaps = 7/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ EA + G+ T + + L+ +D++ A+TGSGKT AF L + + LL Sbjct: 31 VTDVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ + E L + GV AV +GG+ + L H Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ +F Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + K+ V+ ++S+ + + + + +D +V IL Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA+ Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ + Q Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369 >gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC BAA-1200] gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC BAA-1200] Length = 444 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 183/342 (53%), Gaps = 5/342 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I AL GY T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSALVSAGYETPTPIQAQAVPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTRR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALTYAKNMKWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D + ++ + L+ ++LDEAD MLD+GF +DIE I+ ++P+ R+ L Sbjct: 126 PVDLIVATPGRLMDLMDSGKVDFARLEVLILDEADRMLDMGFIEDIETIVAATPEDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ K+ V I + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKNPEVVEIERVDEQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + VI+ +L E+ +HR GRTGRAGR G++V Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAV 347 >gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia] gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia] Length = 519 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 214/385 (55%), Gaps = 13/385 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + + + +A E + + +Q + L+ KDV+ A+TGSGKT AF L + LL Sbjct: 72 LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 131 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ AL + PTRELA Q+G + E L + G+ V +GG+ + + L H Sbjct: 132 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 185 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR +F Sbjct: 186 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 245 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + KD V++ ++++ + + + + + +D +V+IL Sbjct: 246 SATMTKKVKKLQRASLKDPVKIEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 305 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FCST + + +L + L G++SQ +R AL + + I+TDVA+ Sbjct: 306 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSILISTDVAS 365 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362 RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E L + Sbjct: 366 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 425 Query: 363 ANVSVVWEPAPSVEAIRER--DAQR 385 +++ V A++ER +AQR Sbjct: 426 -QLTLYKCEEDEVMALQERVAEAQR 449 >gi|282899322|ref|ZP_06307291.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii CS-505] gi|281195779|gb|EFA70707.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii CS-505] Length = 497 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/352 (34%), Positives = 186/352 (52%), Gaps = 10/352 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73 L G+ T++Q + L +DV+ +QTG+GKT AF L + +R P Sbjct: 19 LENMGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL-------ERLDPNKR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL + PTRELA+QV + + + V GG S+ R+ L+ G H+VVGTPG Sbjct: 72 AVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLKRGVHVVVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D + L + +K VLDEADEML +GF DD+ IL +P+ R+ +FSAT+ P+I Sbjct: 132 RVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQNRQTALFSATMPPSI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCS 252 L + V V + + I+ A L+ + A+ IL + A++F Sbjct: 192 RQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKALQPILEMEDPETALIFVR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + + T L V G+LSQQ R L R+ + R +ATD+AARG+D+ Sbjct: 252 TRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAARGLDVDL 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 L VI+ +L + E +HR GRTGRAG++G ++ ++ Q +RR ++ F N Sbjct: 312 LSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLV-QPFERRKQQAFERHN 362 >gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus] gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus] gi|296472163|gb|DAA14278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus] Length = 784 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 218/400 (54%), Gaps = 20/400 (5%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 248 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 LL E AP L +APTRELA QV R+ + K + VA GG + + Sbjct: 249 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKK--LAVACFYGGTPYGGQIERM 306 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DH++ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 307 KNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 366 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 367 EDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 426 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ +A +L G++ Q++R L+ R Sbjct: 427 VIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQ-DAQSLHGDIPQKQREITLKGFR 485 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LV+ + + E+ +HRSGRTGRAGR G+ + Sbjct: 486 NGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 545 Query: 352 MQRRAERLFREANVSV--VWEPAPSVEAIR--ERDAQRIL 387 + + ++ ++A + + P+P+ E I+ +DA R+L Sbjct: 546 EEYQLAQVEQKAGIKFKRIGVPSPT-EIIKASSKDAIRLL 584 >gi|165933600|ref|YP_001650389.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa] gi|165908687|gb|ABY72983.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa] Length = 414 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 5 MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 63 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 64 SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 115 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P+KR Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I +++ Y + VR+ + + N+ ++I ++ V+ ++ +A+ L Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLG 235 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H + I+F T+ S + K+L A+ G+LSQ++R + R R+ +A Sbjct: 236 -HREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 294 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 295 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 349 >gi|163748720|ref|ZP_02155973.1| ATP-dependent RNA helicase [Shewanella benthica KT99] gi|161331830|gb|EDQ02634.1| ATP-dependent RNA helicase [Shewanella benthica KT99] Length = 438 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 194/343 (56%), Gaps = 13/343 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+E G+ T +Q A L L++KD+ AQTG+GKT+AF +A LL+ S Sbjct: 20 IKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFEHLLS-----S 74 Query: 71 PA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 P + P A+ +APTRELA+Q+ R+ L TG+ V + GG S +R+ L G Sbjct: 75 PIPEGRQLNQPRAMIMAPTRELAIQIARDATLLAKHTGLKVGIVYGGESYEVQRKVLDKG 134 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182 I++GT GR+ D++R +N+S ++ VVLDEAD M DLGF DI F+ P K R Sbjct: 135 IDILIGTTGRIIDYVRQGIINLSAIQVVVLDEADRMFDLGFIKDIRFLFRRMPDAKLRLN 194 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT+S + LA ++ + +V IA + +I ++ ++ +++++ Sbjct: 195 MLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEED 254 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + AI+F +T+ S L+ +V L+G++ Q++R L+ G +ATD Sbjct: 255 WPEKAIIFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTGELDFLVATD 314 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+ + D+ V + +L + E+ +HR GRTGR G+KG+S+ Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRVGKKGVSI 357 >gi|163840630|ref|YP_001625035.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] gi|162954106|gb|ABY23621.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 631 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 192/373 (51%), Gaps = 4/373 (1%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M+ F + +P+ + L +G +Q L L +DVL +TGSGKT+AFGL L Sbjct: 73 MQTFSSLGVPKALVSVLDAQGIDAPFPIQAKTLPDSLGGRDVLGRGRTGSGKTLAFGLPL 132 Query: 59 ASTLLA-ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 + L E + PL L +APTRELA Q+ +E L G+ V GGVS R+ Sbjct: 133 VARLAEREAAYMRKPNRPLGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGVSQQRQ 192 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R L+ G IV+ PGRL D +R K +++ ++ VLDEAD M DLGF ++ +LD++P Sbjct: 193 ERALKAGVDIVIACPGRLEDLMRQKLVSLESVEITVLDEADHMADLGFLPVVKRLLDTTP 252 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 + + L+FSAT+ + + + Y V ++ S +++ + VA + ++ Sbjct: 253 TQGQRLLFSATLDNGVDKIVQRYLSQPVTHSVDEPKAAVSTMEHHVLAVADQNVKKQLIV 312 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L G ++F T+ + K L + V L G LSQ R L G RV Sbjct: 313 EL-AAGTGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVRV 371 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARG+ + D+ELVIH + + + LHRSGRT RAG G V + Q + Sbjct: 372 LVATDVAARGVHVDDVELVIHVDPPTAHKAYLHRSGRTARAGSDGTVVTISLPEQQSDVK 431 Query: 358 RLFREANVSVVWE 370 +L R A V V +E Sbjct: 432 KLMRAAGVDVAFE 444 >gi|149908416|ref|ZP_01897079.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36] gi|149808579|gb|EDM68514.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36] Length = 438 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 180/329 (54%), Gaps = 7/329 (2%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T +Q L L KDV+ +TGSGKT AFGL L L E R L + P Sbjct: 1 MTPIQAQSLPSILEGKDVIGQGKTGSGKTAAFGLGLLQRLDVERFRIQ------TLVLCP 54 Query: 83 TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 TRELA QV +E+ L + V GG+ + L++GAHI+VGTPGR+ DH+ Sbjct: 55 TRELADQVAKEIRKLARGIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPGRVLDHLTK 114 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201 L + +L VLDEAD ML++GF+D ++ I++ +P R+ L+FSAT I +A Sbjct: 115 GTLRLDNLTTFVLDEADRMLEMGFQDALDAIVEKAPSDRQTLLFSATFPKKIQAIAAKIM 174 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 + V +AS + + + + +R + + +L H ++ ++FC+T+ V Sbjct: 175 NNPEMVEVASTHDDSTIKQHFYKVKNFGERLDTVRGLLLQHKPESTVIFCNTKKDVQDVA 234 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 L F V+AL G+L Q++R AL + V +ATDVA+RG+D+ L+ VI+ ++ Sbjct: 235 DELGHFGFSVIALHGDLEQRDRDQALVRFSNKSISVMVATDVASRGLDIESLDAVINFQV 294 Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 S + E +HR GRTGRAG KGM+ + + Sbjct: 295 SHDSEIHVHRIGRTGRAGSKGMAYTIFDE 323 >gi|28871796|ref|NP_794415.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato str. DC3000] gi|28855048|gb|AAO58110.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 442 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P S Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 I-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R K + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNDVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG+ G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLV 348 >gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120] gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120] Length = 426 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 188/340 (55%), Gaps = 2/340 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-F 69 I A++E GY T +Q + L +D+L AQTG+GKT +F L L L ++ + Sbjct: 12 IINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLHLLSQDSLKSA 71 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 S AS+P+ AL + PTRELA QV + + V GGVS++ +++ L+ I+ Sbjct: 72 SNASSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKQRLKGRVDIL 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ +N+S ++ +VLDEAD MLD+GF DI IL PK+R+ L+F AT Sbjct: 132 VATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLLFFAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N + + + + + + +++R + Sbjct: 192 FSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAHLIRKDNWYQVL 251 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R K L Q +A+ G SQ R++AL ++G +V +ATD+AARG+ Sbjct: 252 VFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLVATDIAARGL 311 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ +L V++ +L PE+ +HR GRTGRAG G +V ++ Sbjct: 312 DISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLV 351 >gi|119471950|ref|ZP_01614235.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonadales bacterium TW-7] gi|119445208|gb|EAW26499.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonadales bacterium TW-7] Length = 440 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 190/337 (56%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ +G T +Q + L D+ ++TGSGKT+AF L ++ + + Sbjct: 16 LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV +L L A T + +GG + + + + L+N VV TPGR Sbjct: 74 PRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKVLGGENFNDQIKALRNDPQFVVATPGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA- 192 L DH+ + L +S L+ ++ DEAD +LDLGF + ++ I D + + R+ L+FSAT+ A Sbjct: 134 LADHVTKRSLQLSGLELLIFDEADRILDLGFTEQLKLINDEANHRLRQTLLFSATLDHAQ 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251 + L++N K ++ +++ N QHSDI L D A++ + L+ I+F Sbjct: 194 VDALSRNLLKKPKQITLSAANEQHSDITQTLYLADHLDHKEALLAHFLKQDEVGQCIIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TRA SR ++ L F+ VAL+G+L+Q +R + + G ++ I TDVA+RG+DL Sbjct: 254 ATRADTSRLSEELNNKGFKSVALAGDLTQSKRLDIMDSFSRGNFKILITTDVASRGLDLL 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + VI+ +L + E +HR GRTGRAG KG ++ ++ Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGTAISLV 350 >gi|294661382|ref|YP_003573258.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus 5a2] gi|227336533|gb|ACP21130.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus 5a2] Length = 575 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 118/361 (32%), Positives = 194/361 (53%), Gaps = 35/361 (9%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ +AL + + T++Q + L++KD+L SAQTG+GKT+AF + L + LL++ Sbjct: 12 VLTQALDKLSFTQPTAIQAKAIPLALQQKDILGSAQTGTGKTLAFAIPLINKLLSD---- 67 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIV 128 P S + L + PTRELA QV + L K+ + A+ IGG +++ L++ I+ Sbjct: 68 -PTS--MGLILTPTRELAQQVATNINQLLFKSSFIKTALLIGGEPYNKQLAQLRSNLRII 124 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 +GTPGR+ DH+ N + ++LDE D M D+GF +E I+ P +R+ LMFSAT Sbjct: 125 IGTPGRVIDHLERGSFNPKDIDFLILDETDRMFDMGFSIQLEQIVSQLPTQRQTLMFSAT 184 Query: 189 ISPAITTLAKNYQKDAVRV--------NIASENRQHSDID------YRAVLVALSDRDNA 234 P + LA Y + R+ I ++N ++ Y +L L+ R+ Sbjct: 185 FPPKVEKLAAKYMQSPERIFMNEFDSMAIVAQNLTQEILEIKEENKYFELLTQLNSREGT 244 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 I +VF T+ + + L + + A+ G L Q +R ++ R GR Sbjct: 245 I------------LVFVKTKDNAEHLSLRLNKEAYNTCAIHGNLRQTKRERVMRAFRQGR 292 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 ++ +ATD+AARG+D+P ++ VI+ ++ PE+ +HR GRT RAG KG ++ FV Q+ + Sbjct: 293 HQIMVATDIAARGLDVPHVKHVINYDIPHAPEDYVHRIGRTARAGAKGFALSFVSSQDRK 352 Query: 354 R 354 R Sbjct: 353 R 353 >gi|330972612|gb|EGH72678.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 498 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 194/342 (56%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GK F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKAGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 484 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 190/342 (55%), Gaps = 13/342 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ GY + T +Q + L +D+L AQTG+GKT AF L + S L R A Sbjct: 14 QAVAATGYTSPTPIQAEAIPHALAGRDILGIAQTGTGKTAAFTLPMLSRLEQGRAR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQNGAHIV 128 P L + PTRELA QV E +A+ G+ VA+ IGGVS + + GA ++ Sbjct: 71 RMPRTLILEPTRELAAQV----EESFARYGINHKLNVALLIGGVSFAEQENKIMRGADVL 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FSAT Sbjct: 127 IATPGRLLDFSERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKN 246 + P IT L + + + VR+ +A + + I V A + R+ I KN Sbjct: 187 MPPEITRLTETFLHNPVRIEVARASSTATTITQGLVASAHGPAKRETLRQLIRGAENLKN 246 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+FC+ + V+ K L +H F AL G++ Q+ R +L + G + + +DVAAR Sbjct: 247 AIIFCNRKRDVAVLHKSLQKHGFSAGALHGDMDQRARMTSLDAFKSGDVNLLVCSDVAAR 306 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+PD+ V + ++ ++ E+ +HR GRTGRAGR G+++ ++ Sbjct: 307 GLDIPDVSHVFNFDVPTHAEDYVHRIGRTGRAGRSGVALSIV 348 >gi|114321219|ref|YP_742902.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227613|gb|ABI57412.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 438 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 117/333 (35%), Positives = 185/333 (55%), Gaps = 10/333 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSPASAP 75 G+ T +Q A L L +D+ AQTG+GK+ AF LA L+ E + P Sbjct: 28 GFEYCTPIQAATLPKALEGRDIAGQAQTGTGKSAAFLLAAMHRLMTVPVEEGK----EGP 83 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 L +APTRELA+Q+ R+ L TG+ A GG +R+ LQ G I++GTPGR+ Sbjct: 84 WTLILAPTRELALQIHRDALQLGRYTGLKCAAIYGGTGYEAQRQQLQEGVDIIIGTPGRV 143 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATISPAI 193 D + + ++ H++ V+LDEAD M DLGF DI +++ P KR ++FSAT+S + Sbjct: 144 IDFFKQRIFHLKHIEVVILDEADRMFDLGFIADIRYLMRRMPEPSKRMNMLFSATLSHRV 203 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCS 252 LA + D V I SE + + V+ ++ ++ ++R A N +I+F + Sbjct: 204 MELAYEHLNDPEVVRIESEQITADKVRQKLYHVSKDEKIPLLLGLIRQEEAMNRSIIFVN 263 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + R T L + + +SG++ Q++R + L+ +DG R +ATDVAARG+ + D Sbjct: 264 TKRAADRVTGYLLGNDIEAAVISGDIPQKKRESLLKRFQDGELRFLVATDVAARGLHIED 323 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ +L +PE+ +HR GRT RAG G ++ Sbjct: 324 VSHVINYDLPQDPEDYVHRIGRTARAGASGDAI 356 >gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480] gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480] Length = 474 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 189/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A + Y T +Q + L+ +D++ A+TGSGKT AF L + L+ + + Sbjct: 62 DACTSLRYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELAVQ+ E L + V AV +GG+ + + L HI+V TP Sbjct: 119 ---FGLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL P++RR +FSAT+S Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q S + + + +D +V+IL ++ I+F Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDVYLVHILNEFPGQSTIIF 295 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 296 TRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRNILVATDVAARGLDI 355 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P ++LV++ +L S+ + +HR GRT RAGR G ++ ++ Q Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQ 395 >gi|304367670|gb|ADM26640.1| vasa-like protein [Branchiostoma floridae] Length = 785 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 187/335 (55%), Gaps = 9/335 (2%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPL 76 Y T VQ+ + L +D++ AQTGSGKT AF L + + ++ E FS P Sbjct: 355 YDRPTPVQKYSIPIVLGGRDLMACAQTGSGKTAAFLLPVLTGMMKEGLAGSSFSNIQEPQ 414 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 A+ +APTRELA+Q+ E T + + GGVSV + +Q G H++V TPGRL Sbjct: 415 AICVAPTRELAIQIFSEARKFSYGTMLRPCIAYGGVSVMHHKSQIQRGCHLLVATPGRLL 474 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKK--RRMLMFSATIS 190 D I ++I LK ++LDEAD MLD+GF +I +++++ P K R+ LMFSAT Sbjct: 475 DFIDKGVISIKKLKYLILDEADRMLDMGFEPEIRRLVETASWGMPAKGERQTLMFSATFP 534 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+++ +D + + I ++D++ + + D+ + +IL G + +VF Sbjct: 535 EEIQKLAQDFLEDYIFLTIGRVGGANTDVEQTVMESSQYDKREKLTDILGNLGQERVLVF 594 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L++ F ++ G+ Q+ER AL R GRA V +AT VAARG+D+ Sbjct: 595 VETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMDFRTGRAPVLVATSVAARGLDI 654 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 P + +V++ +L S+ + +HR GRTGR G G ++ Sbjct: 655 PKVMVVVNYDLPSSIDEYVHRIGRTGRVGNTGKAI 689 >gi|222149464|ref|YP_002550421.1| ATP-dependent RNA helicase [Agrobacterium vitis S4] gi|221736447|gb|ACM37410.1| ATP-dependent RNA helicase [Agrobacterium vitis S4] Length = 484 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 199/371 (53%), Gaps = 7/371 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ L++ G+ T +Q + + +D++ AQTG+GKT AFGL + LL +++ Sbjct: 27 PTVVA-TLTQLGFETPTPIQAQGIPVVMAGRDLIGLAQTGTGKTAAFGLPIIE-LLMKDE 84 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R L +APTREL Q+G L KT + + +GG S+++++ L+ G I Sbjct: 85 RRPDNRTTRTLILAPTRELVNQIGDNLRSFIRKTPIKINQVVGGASINKQQLQLERGTDI 144 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D I +++ + +VLDEAD+MLDLGF D+ I P KR+ L+FSA Sbjct: 145 LVATPGRLLDLISRNAISLRAVTHLVLDEADQMLDLGFIHDLRKIAKMVPAKRQTLLFSA 204 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKN 246 T+ AI LA ++ + V V ++ + ++ Y + + + + L H Sbjct: 205 TMPKAIADLAGSFLNNPVTVEVSPPGKAADKVEQYVHFVNGQNHKTELLKKTLADHPDGR 264 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +IVF T+ + K L F V ++ G SQ +R AL+ RDG R IATDVAAR Sbjct: 265 SIVFLRTKHGAEKLMKHLEITGFSVASIHGNKSQGQRERALKGFRDGSIRTLIATDVAAR 324 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREA 363 GID+P + V + +L P+ +HR GRT RAGR G+++ F P + R ERL Sbjct: 325 GIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEARLLRDIERLM-GI 383 Query: 364 NVSVVWEPAPS 374 +SV AP+ Sbjct: 384 EISVASGEAPA 394 >gi|121599633|ref|YP_993994.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei SAVP1] gi|121228443|gb|ABM50961.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei SAVP1] Length = 473 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 3 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 60 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 61 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 120 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 121 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 180 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 181 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 240 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 241 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 300 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 301 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 360 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 361 VIPGFEPDPNAKPEPIQRR 379 >gi|51244788|ref|YP_064672.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54] gi|50875825|emb|CAG35665.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54] Length = 423 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 116/336 (34%), Positives = 187/336 (55%), Gaps = 1/336 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E+GY + +Q + + KDV+ +AQTG+GKT AF L + LL+++ R A Sbjct: 14 KAVAEKGYDTPSPIQAKAIPVIMEGKDVMAAAQTGTGKTAAFTLPILE-LLSQSKRRVQA 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + L + PTRELA Q+G + + AV GGV+++ + + L+ G I+V TP Sbjct: 73 NQARVLILTPTRELAAQIGESVTTYGKGLSLTSAVIFGGVNINPQMKRLRGGVDILVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D R + + L+ +VLDEAD MLD+GF +DI +L PK+R+ LMFSAT S + Sbjct: 133 GRLLDLHRQNAIKFNRLEILVLDEADRMLDMGFINDIRKVLAFLPKERQNLMFSATFSSS 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ + V +++ N ID V + ++ ++R + +VF Sbjct: 193 INNLARGMFNNPVEISVTPPNSTVEIIDQCIYPVDKKQKPALLIQLIRDNKWGQTLVFSK 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R L + A+ G SQ R+ AL ++G ++ +ATD+AARG+D+ Sbjct: 253 TKHGANRLVGQLQKKGINAAAIHGNKSQSARTKALAEFKNGTVQILVATDIAARGLDIDL 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 313 LPHVVNFDLPHVQEDYIHRIGRTGRAGASGEAISLV 348 >gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346] gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346] Length = 488 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei DM98] Length = 434 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|77362320|ref|YP_341894.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125] gi|76877231|emb|CAI89448.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein family [Pseudoalteromonas haloplanktis TAC125] Length = 433 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 183/345 (53%), Gaps = 3/345 (0%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K F P+++ +AL E Y LT +Q A + + KDVL SAQTG+GKT AF L + Sbjct: 3 FKSFSFAPELV-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L S +AP AL +APTRELA Q+ + T + V GGV+ + Sbjct: 62 KLF--ESEVSTTNAPHALVLAPTRELAEQIANNFKDFAKHTSLKVVSLFGGVNTAGQANA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G IVV TPGRL DHIR L+++ +K +VLDEAD MLD+GF ++++ ++ S R Sbjct: 120 LKEGVDIVVATPGRLLDHIRLGNLSLASVKHLVLDEADRMLDMGFIEEMQGVIKSCADDR 179 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++L+FSAT AI A K V + N S + + V + + ++ Sbjct: 180 QILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVAHVVYPVEERRKQELLSELIG 239 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + +VF + + + L G+ SQ R AL+ ++G+ RV +A Sbjct: 240 KKNWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVA 299 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 T+VAARGID+ L VI+ +L E+ +HR GRTGRAG++G ++ Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGKEGQAI 344 >gi|224052974|ref|XP_002297644.1| predicted protein [Populus trichocarpa] gi|222844902|gb|EEE82449.1| predicted protein [Populus trichocarpa] Length = 574 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 207/399 (51%), Gaps = 34/399 (8%) Query: 5 ENIPQVI--------GEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52 EN+P + GEAL+ YV T VQ + L +D++ AQTGSGKT Sbjct: 114 ENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLTGRDLMACAQTGSGKTA 173 Query: 53 AFGLALASTLLAEND-------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105 AF + S ++ D R + PLAL ++PTREL++Q+ E + +TGV V Sbjct: 174 AFCFPIISGIMKMQDQSAQRPLRGARTVYPLALILSPTRELSMQIHEEAKKFSYQTGVKV 233 Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165 V GG +H++ R+L+ G I+V TPGRL D + +++ +K + LDEAD MLD+GF Sbjct: 234 VVAYGGAPIHQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGF 293 Query: 166 RDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221 I I++ P R+ ++FSAT I LA ++ V + + I Sbjct: 294 EPQIRKIVEQMDMPPPGSRQTMLFSATFPKEIQRLASDFLASYVFLAVGRVGSSTDLIAQ 353 Query: 222 RAVLVALSDRDNAIVNIL---RYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVAL 274 R V SD+ + ++++L R +G + +VF T+ L + F ++ Sbjct: 354 RVEFVQESDKRSHLMDLLYAQRANGVQGKQDLTLVFVETKKGADSLEHWLCINNFPATSI 413 Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334 G+ SQQER AL+ + G + +ATDVAARG+D+P + V++ +L ++ ++ +HR GR Sbjct: 414 HGDRSQQEREQALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGR 473 Query: 335 TGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSV-VW 369 TGRAG+ G++ + +M R L +EAN V W Sbjct: 474 TGRAGKSGLATAFFNEGNASMARPLSELMQEANQEVPAW 512 >gi|114564231|ref|YP_751745.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335524|gb|ABI72906.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 433 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 118/351 (33%), Positives = 194/351 (55%), Gaps = 2/351 (0%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A++E GY ++T +Q+ + R +DVL SAQTG+GKT AF L + + Sbjct: 6 FSFAPEIL-RAIAECGYQSMTPIQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQRM- 63 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 +N + + S L + PTRELA QV + + V GGV + + + L+ Sbjct: 64 CDNPKETMPSNTRTLILTPTRELAAQVADNISAYSKHLNLTVLTIYGGVKIDTQSQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA ++V TPGRL +HI L++S+++ +VLDEAD MLD+GF DI+ IL + KKR+ + Sbjct: 124 GADVIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSADIKKILQAVNKKRQNM 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S + LA + + + + +N + V + I ++ Sbjct: 184 LFSATFSSEVKKLANDMLEKPKVITVDKQNTTADTVSQVVYPVEQRRKRELISELIGTKN 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF +TR + + K L + GE +Q R AL+ +G+ RV +AT+V Sbjct: 244 WQQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIRVLVATEV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 AARG+D+ +LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 304 AARGLDIKNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354 >gi|157828874|ref|YP_001495116.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801355|gb|ABV76608.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila Smith'] Length = 410 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 1 MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 60 SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 111 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P+KR Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I +++ Y + VR+ + + N+ ++I ++ V+ ++ +A+ L Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLG 231 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H + I+F T+ S + K+L A+ G+LSQ++R + R R+ +A Sbjct: 232 -HREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 345 >gi|70733086|ref|YP_262859.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5] gi|68347385|gb|AAY94991.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas fluorescens Pf-5] Length = 622 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 136/393 (34%), Positives = 217/393 (55%), Gaps = 19/393 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-LYARDLKFVSACIFGGVGMNPQVQAMARGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT LA + R+ + N I+ R + S + + +++ + Sbjct: 192 ATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE- 362 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ V P + + + ER+ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371 Query: 363 -ANVSVVWEPAPSVEA----IRERDAQRILQDP 390 A+ ++ A +VEA +RER R ++P Sbjct: 372 IADGDLMGFDASAVEAEKPEVRERPDVRNPRNP 404 >gi|254413664|ref|ZP_05027434.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179771|gb|EDX74765.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes PCC 7420] Length = 464 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 141/415 (33%), Positives = 216/415 (52%), Gaps = 15/415 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-AS 73 L + G+ T +Q + L +DV+ +QTG+GKT AF L + ++ P A Sbjct: 18 LEKLGFDTPTEIQSQAIPELLAGRDVVAQSQTGTGKTAAFSLPML-------EQIDPNAR 70 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + L + V + GG S+ R+ R LQ A +VVGTPG Sbjct: 71 GVQALILAPTRELARQVADAIRDLTSNRRVGIVTVYGGQSIDRQIRLLQRNAQMVVGTPG 130 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D + L + +K VVLDEADEML +GF DD++ IL +PK+R+ FSAT+ AI Sbjct: 131 RVIDLLDRGDLKLDQVKWVVLDEADEMLSMGFIDDVKKILKQAPKERQTACFSATMPKAI 190 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAKNAIVFCS 252 L + K V V + + I+ R ++ + A+ IL + A++F Sbjct: 191 RDLVNQFLKSPVTVTVELPKATPARIEQRVYMIPRGCSKSKALQPILALEDPEAALIFVR 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR S + T L V G+LSQ +R L R + R +ATD+AARG+D+ Sbjct: 251 TRRSAAELTSQLQAAGHSVDEYHGDLSQSQRERLLSRFRQSQVRWVVATDIAARGLDVDH 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGRAG+ G ++ +I +R+ ++ R+ ++ Sbjct: 311 LTHVINYDLPDQVESYIHRIGRTGRAGKTGTAISLIQPFERRKLHQIERKVRQNLQVSRI 370 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAKHDPEKIAAGFLRI 423 P+ I R ++ LQD L +++ G+ +V L ++DP IAA L++ Sbjct: 371 PTRSQIEARRLEK-LQDELR-EALTGERMASFLPIVRELSEEYDPHAIAAAALQM 423 >gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483] gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f] gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23] gi|156110962|gb|EDO12707.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483] gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f] gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23] Length = 374 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/345 (35%), Positives = 188/345 (54%), Gaps = 1/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY T +Q + L ++D+L AQTG+GKT +F + + L Sbjct: 7 NITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQHL-QM 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N + AL + PTRELA+Q+ + T V V GGV+ + L G Sbjct: 66 NKEAAKCRGIKALILTPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDMLHKGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + +++ ++ VLDEAD MLD+GF DI+ IL PK+++ L F Sbjct: 126 DILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +L + K+ VR++I ++ I+ V ++ +V+IL+ + Sbjct: 186 SATMPDTIISLTNSLLKNPVRISITPKSSTVDAIEQMVYFVEKKEKSLLLVSILQKSEDQ 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + + K+L + A+ G SQ R AL + G+ RV +ATD+AA Sbjct: 246 SVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RGID+ +L LVI+ +L PE +HR GRTGRAG G ++ Q Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQ 350 >gi|70663480|emb|CAJ15139.1| vasa homlogue [Platynereis dumerilii] Length = 712 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 190/349 (54%), Gaps = 13/349 (3%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND------RFSPAS 73 Y T +Q+ + L KD++ AQTGSGKT AF L + + ++ +ND F Sbjct: 290 YDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVLTGII-KNDLIEGGSGFGGPQ 348 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P A+ + PTREL Q+ E + T V V GG SV + R+L+ GAH+VVGTPG Sbjct: 349 YPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSVGYQARELEKGAHVVVGTPG 408 Query: 134 RLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK--RRMLMFSAT 188 RL D I GKG +N+S +K ++LDEAD MLD+GF +I ++ + P+K R+ LMFSAT Sbjct: 409 RLLDFI-GKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVTTFDMPEKGQRQTLMFSAT 467 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LAK + + V V + +SDI V ++ +V IL G + Sbjct: 468 FAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYEKREKLVEILNQAGTDRTL 527 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ S L++ + ++ G+ Q+ER AL + GRA + IAT VAARG+ Sbjct: 528 VFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFKTGRAPILIATSVAARGL 587 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 D+P ++ VI+ +L S + +HR GRTGR G G + ++ + E Sbjct: 588 DIPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSFFDPDVNQDKE 636 >gi|126440586|ref|YP_001057787.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 668] gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 668] Length = 485 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|255621484|ref|XP_002540211.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223498154|gb|EEF22172.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 151 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 97/150 (64%), Positives = 114/150 (76%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M + I +ALS+RGY LT VQ+A+L+P L D LVSAQTGSGKTVAFGLALA Sbjct: 1 MTEINGVVPAIAKALSKRGYTTLTPVQQAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLL +NDRF PA+ PLAL IAPTRELA+QV RELEWLY TG ++ C+GG+ + ERR Sbjct: 61 TLLEDNDRFEPAAEPLALVIAPTRELALQVKRELEWLYEMTGALIVSCVGGMDIRSERRA 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLK 150 L+ GAHIVVGTPGRLCDHIR K L++S LK Sbjct: 121 LERGAHIVVGTPGRLCDHIRRKALDMSALK 150 >gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1] gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1] Length = 480 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 133/382 (34%), Positives = 204/382 (53%), Gaps = 9/382 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + L + S Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSA 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGVS++ + L+ G IVV T Sbjct: 74 KRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT S Sbjct: 134 PGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + + +A N + + V + + +++R H +VF Sbjct: 194 EIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID+ Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDID 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE V Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREV 373 Query: 368 V--WEPAPSV--EAIRERDAQR 385 + +EP P+ E I++R Q+ Sbjct: 374 IAGFEPDPNAKPEPIQQRRGQQ 395 >gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01] gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01] Length = 517 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 183/339 (53%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L N Sbjct: 12 ILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ AL + PTRELA QV +E ++Y + + AV GGV ++ + L+ GA ++V Sbjct: 70 RANQVRALILTPTRELAAQV-QENVFMYGRHLPLSSAVVFGGVKINPQMLRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V +++ N ++ + + +V +++ K +V Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L E A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|330961645|gb|EGH61905.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 442 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 175/335 (52%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P S Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 I-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R K + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599] Length = 513 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 111/339 (32%), Positives = 191/339 (56%), Gaps = 8/339 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ALS G+ T++Q+ + L+ +D++ AQTG+GKT AFG+ L +R Sbjct: 13 IVRALSNMGFEEATAIQDQTVPVALQGRDLIGQAQTGTGKTAAFGIPLI-------ERMD 65 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 S + + + PTRELAVQV E+ + + GG + R+ + L+ I+V Sbjct: 66 ETSGNIQGVVLTPTRELAVQVAEEINKIAQFKNISALPIYGGQDITRQIKALKKRPQIIV 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGR DH+R + + + ++ VVLDEADEML++GF DDI+ IL P+ R+ L+FSAT+ Sbjct: 126 ATPGRFMDHMRRRTIRLDAIEVVVLDEADEMLNMGFIDDIKEILKEVPESRQTLLFSATM 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 AI +A+ + + + + ++ +I + VA + + + +L H + AI+ Sbjct: 186 PRAIQEIAQQFMNEPTIIQVKAKEVTVPNIAQEYMEVAEKQKFDVLCRLLDIHSPELAII 245 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V ++ L + + + G+L+Q +R + L+ ++G V +ATDVAARG+D Sbjct: 246 FGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVATDVAARGLD 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + + V + ++ + E+ +HR GRTGRAG+ G+++ + Sbjct: 306 ISGVTHVFNFDIPQDSESYVHRIGRTGRAGKTGLAITFV 344 >gi|83318931|emb|CAJ38803.1| Vasa protein isoform [Platynereis dumerilii] Length = 732 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 187/348 (53%), Gaps = 11/348 (3%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-----LASTLLAENDRFSPASA 74 Y T +Q+ + L KD++ AQTGSGKT AF L + + L+ F Sbjct: 310 YDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVLTGIIKNDLIEGGSGFGGPQY 369 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P A+ + PTREL Q+ E + T V V GG SV + R+L+ GAH+VVGTPGR Sbjct: 370 PAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSVGYQARELEKGAHVVVGTPGR 429 Query: 135 LCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK--RRMLMFSATI 189 L D I GKG +N+S +K ++LDEAD MLD+GF +I ++ + P+K R+ LMFSAT Sbjct: 430 LLDFI-GKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVTTFDMPEKGQRQTLMFSATF 488 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + I LAK + + V V + +SDI V ++ +V IL G +V Sbjct: 489 AAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYEKREKLVEILNQAGTDRTLV 548 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ S L++ + ++ G+ Q+ER AL + GRA + IAT VAARG+D Sbjct: 549 FLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFKTGRAPILIATSVAARGLD 608 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +P ++ VI+ +L S + +HR GRTGR G G + ++ + E Sbjct: 609 IPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSFFDPDVNQDKE 656 >gi|33599198|ref|NP_886758.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] gi|33575244|emb|CAE30707.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] Length = 574 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 209/361 (57%), Gaps = 19/361 (5%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE++ P ++ ALSE G+ TSVQ A + + D++VS+QTGSGKT AF L + Sbjct: 15 FEDLGLAPTIL-SALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALN 73 Query: 61 TLLAENDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115 + + P + + L + PTRELA+QV + Y + G+ A +GG+ Sbjct: 74 RIAHQ-----PGNKGVGVQVLVLTPTRELALQVA-DATASYGRNLPGLRTATVVGGMPYG 127 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + + L ++V TPGRL DH++ + ++ + +VLDEAD MLD+GF +DIE I++ Sbjct: 128 AQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIER 187 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233 PK+R+ L+FSAT+ ++ LA+ ++ R+ IA ++H++I +++L A + + Sbjct: 188 LPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANI-TQSLLYADDAAHKMR 246 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + ++LR AIVF +T+ LA+ F AL G+++Q++R+ L ++ G Sbjct: 247 LLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRG 306 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + RV +ATDVAARGID+ + ++ +L E+ +HR GRTGRAGR G + F + + + Sbjct: 307 QLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQA-FTLATHAE 365 Query: 354 R 354 R Sbjct: 366 R 366 >gi|33602957|ref|NP_890517.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] gi|33568588|emb|CAE34346.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] Length = 423 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 116/317 (36%), Positives = 182/317 (57%), Gaps = 2/317 (0%) Query: 40 VLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWL 97 ++ +AQTG+GKT AF L + L+ N SPA P+ AL + PTRELA QV ++ Sbjct: 1 MMGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRELADQVYESVKRY 60 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 T + AV GGV + ++ L+ G ++V TPGRL DH+ K +N+S + +VLDEA Sbjct: 61 SLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEA 120 Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217 D MLD+GF D+E I+ P +R+ L+FSAT S I L ++Y V + +A+ N Sbjct: 121 DRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATAD 180 Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + A + + A+V++++ G K IVF +T+ +R + L + ++ G+ Sbjct: 181 TVTQIAYQMHGDTKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGD 240 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 +Q +R AL+ + G V +ATDVAARG+D+ + VI+ +L N E+ +HR GRTGR Sbjct: 241 KTQGDRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGR 300 Query: 338 AGRKGMSVFVIPQNMQR 354 AG G ++ + + +R Sbjct: 301 AGASGEAIALFTADEER 317 >gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD 2210633] gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD 2210633] gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] Length = 522 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 183/339 (53%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L N Sbjct: 12 ILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ AL + PTRELA QV +E ++Y + + AV GGV ++ + L+ GA ++V Sbjct: 70 RANQVRALILTPTRELAAQV-QENVFMYGRHLPLSSAVVFGGVKINPQMLRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V +++ N ++ + + +V +++ K +V Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L E A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM 14600] gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM 14600] Length = 538 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/334 (35%), Positives = 188/334 (56%), Gaps = 9/334 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 A+ + GY T VQE + L +D++ AQTG+GKT AF L + L L + R Sbjct: 76 AIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHKLTLLKRPRVR-- 133 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 AL + PTRELA+Q+ + Y + + VC+ GG + L+ GA I+V T Sbjct: 134 ----ALVLTPTRELAIQIFDNFKK-YGRYLHLRTVCLYGGAKRGPQIGALRRGADILVAT 188 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + +++S ++ +VLDEAD MLD+GF D+ I++S+P KR+ LMFSAT+ Sbjct: 189 PGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTLMFSATMEK 248 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + LA KD V+V + EN ++ + + + D+ I ++L ++AIVF Sbjct: 249 EVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEAVESAIVFT 308 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + ++ L + VA+ G+ +Q +R +AL + G+ RV +ATDVAARG+D+P Sbjct: 309 RTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATDVAARGLDIP 368 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L V + ++ +HR GRTGRAG G+++ Sbjct: 369 KLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAI 402 >gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7] gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7] Length = 447 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 193/363 (53%), Gaps = 16/363 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL G T +Q + P L+ +D+L +AQTG+GKT AF L L L E + + A Sbjct: 14 KALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLLQRLTLEGPQVA-A 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 ++ AL + PTRELA QV + + AV GGVS++ + L+ G ++V TP Sbjct: 73 NSVRALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDVLVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D R + + L+A+VLDEAD MLDLGF +++ + + P+KR+ L+FSAT S A Sbjct: 133 GRLLDLYRQNAVQFARLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I TLA +D + + ++ N + V V + ++L+ + + A+VF Sbjct: 193 IRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQALVFAK 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR SV +L ++ G+ Q R ALQ + G + +ATDVAARG+D+ + Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357 + LV++ +L E+ +HR GRTGRAG G ++ +I Q +QRR E Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLAAIETLIGQTLQRREE 372 Query: 358 RLF 360 F Sbjct: 373 PDF 375 >gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana MHOM/GT/2001/U1103] Length = 684 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 148/443 (33%), Positives = 223/443 (50%), Gaps = 37/443 (8%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE P V+ +AL RG ++ VQ N +R DVLV A+TGSGKT+AFG+ + LL Sbjct: 91 FEMNPTVV-KALQSRGIESMFPVQALTFNAIMRSTDVLVQARTGSGKTLAFGIPIVERLL 149 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P A+ PTRELA+QV L + G+VV GGV+ + R L++ Sbjct: 150 KLPSHLIRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLVVTALYGGVAYANQERVLRS 207 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179 G IVV TPGR D + L+ + LDEAD MLD+GF+DDIE +L ++ Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267 Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231 + L+FSAT+ + T + KD +++ + R S I + S+ Sbjct: 268 GAEKPVHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326 Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 + + ++++ Y GA +VF +T+ + + L G++ Q++R + ++ Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 RD + V IATDVAARG+DLP ++LVI ++ + +HR+GRTGRAGRKG+ V + Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLYQ 444 Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD---------PLFLDSIQGDE 400 + ER+ R A + PAP+ E I + A+ +D LF+D Q E Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATNLFMD--QAAE 502 Query: 401 KKMVDVLLAKHDPEKIAAGFLRI 423 LL DP +I A L + Sbjct: 503 ------LLKDADPVEILASALAV 519 >gi|329114670|ref|ZP_08243429.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001] gi|326696150|gb|EGE47832.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001] Length = 637 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/334 (35%), Positives = 183/334 (54%), Gaps = 3/334 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+S+ GY + T +Q + L +DV+ AQTG+GKT +F L + L R A Sbjct: 167 AISDMGYTHPTPIQAQAIPAILMARDVMGVAQTGTGKTASFTLPMLEILADSRAR---AR 223 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P +L + PTRELA+QV + A+ IGG S+ ++ L G +++ TPG Sbjct: 224 MPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRGVDVLIATPG 283 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D GL ++H +V+DEAD MLD+GF DIE I+ P R+ L+FSAT++P I Sbjct: 284 RLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLLFSATMAPTI 343 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + + +A ++ + I V+V + + +L+ +NAIVFC+ Sbjct: 344 RKLADTFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLKDPALQNAIVFCNR 403 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V TK L +H F AL G+L Q R + L+ ++ +V + +DVAARGID+ L Sbjct: 404 KRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCSDVAARGIDIGGL 463 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 V + +L + E+ +HR GRTGRAGR+G + + Sbjct: 464 SHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSI 497 >gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314] gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314] gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1] Length = 399 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 117/333 (35%), Positives = 190/333 (57%), Gaps = 9/333 (2%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 + T +Q + L KD++ AQTGSGKT AF + + +L + AL Sbjct: 3 FTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPY------FALV 56 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 +APTRELA Q+ + L + G+ + +GG+ + + RDL H++V TPGR+ DH+ Sbjct: 57 LAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHL 116 Query: 140 -RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 KG ++ +LK +V+DEAD +LD+ F ++ IL P KR +FSAT++ I L + Sbjct: 117 EHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQR 176 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + VRV ++S+ + ++ +LV ++ ++++L K+ IVF T A Sbjct: 177 ASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQ 236 Query: 259 RFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 R T +LA L F V L G+LSQ +R +L + +A + +ATDVAARG+D+P +++VI Sbjct: 237 R-TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVI 295 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + ++ ++ + +HR GRT RAGR G S+ +I Q Sbjct: 296 NYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 328 >gi|319651055|ref|ZP_08005189.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] gi|317397225|gb|EFV77929.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] Length = 481 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ + I AL+ Y T VQ ++ ++ +D++V AQTGSGKT +FG+ ++ + E Sbjct: 10 HVSEEIKRALAVLKYETPTEVQSEVIPLAMKNQDLVVKAQTGSGKTASFGIPVSDMVEWE 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P A+ + PTRELAVQV ++ + + G +++ +L+ Sbjct: 70 EKK------PQAIILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQKT 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ DHI + L + +K +++DEADEML+ GF D++E I+ P R ++F Sbjct: 124 HVVVGTPGRVMDHIERETLILDQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMVF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L Y KD +++ I S I++ + V ++ + + ++ Sbjct: 184 SATLPKDVENLCHKYMKDPIQIKIESTKVTADTIEHSLIEVREEEKISLLKDVTVVENPD 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FC T+ V L + + L G L Q++R + ++ + G R +ATDVAA Sbjct: 244 SCLIFCRTKEHVDTVYSELDKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVATDVAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 RGID+ ++ LVI+ ++ E+ +HR+GRTGRAG KG ++ F P Sbjct: 304 RGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFSTP 348 >gi|289665687|ref|ZP_06487268.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 458 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 198/383 (51%), Gaps = 15/383 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P L+ DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQQLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + +VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT I TLA+ KD V + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLAREILKDPVEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351 Query: 355 RAERLFREANVSVVWEPAPSVEA 377 R + L + W AP A Sbjct: 352 RVQALEAAQGQPLKWSRAPLATA 374 >gi|284033244|ref|YP_003383175.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida DSM 17836] gi|283812537|gb|ADB34376.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836] Length = 815 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 186/344 (54%), Gaps = 6/344 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----EN 66 I +AL V +QE L L D++ A+TG+GKT+ FG+ L ++ + Sbjct: 5 ICDALDRVNIVEPFPIQEMTLPVALMGTDLIGQARTGTGKTLGFGIPLLQRTISPGEPDY 64 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + P AL + PTREL +QV ++L V + GGV+ + L++G Sbjct: 65 EELAAPGKPQALVVTPTRELTIQVAKDLTTASTVRTVRILTIYGGVAYEPQLEMLKSGVD 124 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D L++SH+K +VLDEADEMLDLGF D+E IL +P+ R+ ++FS Sbjct: 125 VVVGTPGRLLDLANRGVLDLSHIKVLVLDEADEMLDLGFLPDVERILRKTPELRQTMLFS 184 Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGA 244 AT+ A+ LA+ + + + + S E+ Q + V A D+ + IL+ Sbjct: 185 ATMPSAVIGLARTHMRHPLNIRAESHEDTQMVPTTAQFVYRAHDLDKPEVVARILQAEDR 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++FC T+ R T LA+ F+ A+ G+L+QQ R AL R + V I TDVA Sbjct: 245 GRVMIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARERALTRFRGDKIDVLICTDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARGID+ + VI+ + + +HR GRTGRAG G++V + Sbjct: 305 ARGIDVEGVTHVINNTCPEDEKAYIHRIGRTGRAGASGIAVTFV 348 >gi|330812324|ref|YP_004356786.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 622 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 192/342 (56%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + +YA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-VYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT LA + R+ + N I+ R + S + + +++ + Sbjct: 192 ATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRILVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|313891630|ref|ZP_07825237.1| putative DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus UPII 345-E] gi|329122052|ref|ZP_08250660.1| ATP-dependent RNA helicase DeaD [Dialister micraerophilus DSM 19965] gi|313119908|gb|EFR43093.1| putative DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus UPII 345-E] gi|327466859|gb|EGF12375.1| ATP-dependent RNA helicase DeaD [Dialister micraerophilus DSM 19965] Length = 416 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/400 (32%), Positives = 220/400 (55%), Gaps = 14/400 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP+ I E L +RG +N +Q+ ++ + ++++ AQTG+GKT+A+ L L + E Sbjct: 10 IPE-ISEYLKKRGIINPMPIQKEVIPAIFKGRNIIGRAQTGTGKTLAYLLPLVQRIKKE- 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +S+ + +APTREL+ Q+ L V IGG ++ + + L+ H Sbjct: 68 -----SSSTQVIIMAPTRELSRQIYDVLSDFSKLLNVDSVGVIGGRTIENQIQKLKRNPH 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+VGTPGRL DHIR ++++ +K VVLDEAD+ML GFR+DIE ++D +PKKR++LM S Sbjct: 123 IIVGTPGRLIDHIRKNTIDLTQVKTVVLDEADQMLAAGFREDIEILIDMTPKKRQILMLS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI+ LA+ Y K + ++ SE S ++ R + + +V L+ Sbjct: 183 ATITEESKKLARKYVKAPLIADV-SEKEVASTVEQRIYETTEAGKLKLLVKHLKEMNPYM 241 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A+VFC+TR + VV L G+++Q +R++ ++ +V +A+D+AA Sbjct: 242 AVVFCNTREGAYELAGEVYRATHMVVDQLHGDMTQGQRNHVIRQFSKAAIQVLVASDIAA 301 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFRE 362 RG+D+ + V + ++ ++ + +HR GRTGRAG KGM++ +V P++ M R+ E+ E Sbjct: 302 RGLDVEGVTHVFNYDIPTDLKYYVHRIGRTGRAGTKGMAITYVTPKDAVMLRKLEKSIHE 361 Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402 ++ V+ +R+ +R + P + E K Sbjct: 362 TLTR--YDERGRVKKVRQAKPKRRVVTPGMYKPTKKKEHK 399 >gi|289671300|ref|ZP_06492375.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 458 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 198/383 (51%), Gaps = 15/383 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + + GY LT +Q L P L+ DV+ A TGSGKT AFGL L Sbjct: 1 MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115 L R AL + PTRELA QVG++L L TG+ + V GG+ + Sbjct: 61 LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112 Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + L+ + +VVGTPGR+ + R + L++ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 K R+ L+FSAT I TLA+ KD V + + + +ID + V + R A Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLAREILKDPVEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L ++++VFC+TR V L E F +AL G++ Q++R L + Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ DL V++ EL ++ E HR GRT RAG+ G+++ ++ Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351 Query: 355 RAERLFREANVSVVWEPAPSVEA 377 R + L + W AP A Sbjct: 352 RVQALEAAQGQPLKWSRAPLATA 374 >gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 7894] Length = 416 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] gi|108869558|gb|EAT33783.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] Length = 495 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 113/330 (34%), Positives = 187/330 (56%), Gaps = 10/330 (3%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L+ KDV+ A+TGSGKT AF L + LL R+ A+ + PTRELA Q+ + Sbjct: 92 LQGKDVIGLAETGSGKTGAFALPILQALLENPQRY------FAVILTPTRELAYQISEQF 145 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVV 153 E L A G+ V +GG+ + + L HI++ TPGRL DH+ KG N+ +K +V Sbjct: 146 EALGASIGIKCCVIVGGMDMVSQALHLARKPHIIIATPGRLVDHLENTKGFNLKAVKYLV 205 Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213 +DEAD +L+L F ++E IL P++RR +FSAT++ + L + KD V+V ++S+ Sbjct: 206 MDEADRILNLDFEVELEKILKVIPRERRTFLFSATMTKKVKKLERASLKDPVKVEVSSKY 265 Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273 + + + + +D +V+IL + ++FCST + R +L V Sbjct: 266 QTVEKLLQYYIFIPAKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGLAAVP 325 Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333 L G++SQ +R AL + ++ I+TDVA+RG+D+P +++V++ ++ ++ ++ +HR G Sbjct: 326 LHGQMSQNKRLAALNKFKGKNRQILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVG 385 Query: 334 RTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 RT RAGR G +V + Q + +R E L Sbjct: 386 RTARAGRAGKAVTFVTQYDVELYQRIEHLL 415 >gi|322420162|ref|YP_004199385.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp. M18] gi|320126549|gb|ADW14109.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18] Length = 477 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 117/348 (33%), Positives = 194/348 (55%), Gaps = 4/348 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E +P ++ + + E G+ + T +QE L L KDV AQTG+GKT F +++ Sbjct: 1 MKFTELQLPDLVLKGIEETGFTDCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + LL + + P AL +APTREL VQ+ ++ + L TG + GGV ++R Sbjct: 61 TRLLNQQ-KTGAEHHPRALILAPTRELVVQIEKDAQTLGKYTGFNIQAIYGGVDYMKQRD 119 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178 L+ GA IV+GTPGRL D+++ K ++ ++A+V+DEAD M D+GF D+ FIL P Sbjct: 120 ALKAGADIVIGTPGRLIDYLKQKVYSLKDVEALVIDEADRMFDMGFIADLRFILRRLPTY 179 Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 KR+ L+FSAT++ + LA + +V++ E ++ + ++ ++ Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHASRKEKFPLLLG 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +LR G + ++F +T+ L + F +SG++ Q++R L + G + Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPCKVISGDVEQRKRMKILSDFKAGILPI 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 IATDVA+RGI + + VI+ +L + E+ +HR GRT RAG +GM++ Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAI 347 >gi|182419575|ref|ZP_02950823.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521] gi|237668830|ref|ZP_04528814.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376610|gb|EDT74185.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521] gi|237657178|gb|EEP54734.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 480 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 119/350 (34%), Positives = 188/350 (53%), Gaps = 8/350 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64 NI + I +A+ GY + VQE ++ + KDV+V +QTGSGKT AF + + + Sbjct: 9 NISEEILKAVDGLGYKKPSEVQEKVIPEIILNKDVIVKSQTGSGKTAAFAIPICEKVDWN 68 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 EN AP L ++PTRELAVQV + + + G + + R L+ Sbjct: 69 EN-------APQVLVLSPTRELAVQVSEDFVNIGRFKRIKSVAVFGKQPISEQARALKQK 121 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 H+V GTPGR+ DHI L++ +K V+DEADEML++GF +E ++ PKK+ + Sbjct: 122 THVVCGTPGRVLDHIDRGSLDVKKIKYFVIDEADEMLNMGFIGQVEGVIRRLPKKKVTTL 181 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSATIS I TL + Y V ++I + + +I++ V ++R + +L Sbjct: 182 FSATISDEIRTLCEKYMDRPVDISIEKQKVVNDNIEHGLYYVDYNERFKLLNELLICEKP 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + A++F T+ +V L + + G + Q+ER +A+ R G R+ ATDVA Sbjct: 242 ETAVIFGRTKENVDEIYNFLKSKGYSCGRIHGGMLQKERLSAMDSFRKGEFRILSATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 ARGID+ ++ VI+ EL E +HR GR+GRAG+ G ++ + ++ R Sbjct: 302 ARGIDIENITHVINFELPVEKEAYVHRIGRSGRAGKSGKAISICSKHGDR 351 >gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 459 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 113/344 (32%), Positives = 194/344 (56%), Gaps = 7/344 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+++ GYV+ T +Q + L+ DV AQTG+GKT +F L + + L Sbjct: 10 PKVVC-AVADAGYVDPTPIQVKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P L + PTRELA QV + + +A+ IGG+ + + L+ GA + Sbjct: 69 R---ARMPRTLILEPTRELASQVADNFQKYGKNYNLNIALLIGGIPFETQNKKLERGADV 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGR+ DH L +++++ +V+DEAD MLD+GF DI+ I P R+ L+FSA Sbjct: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPDIQSITSLIPFTRQTLLFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYHGA- 244 T++ + +++ + ++ R+ + + I+ + A S + + ++R A Sbjct: 186 TMTEELQKVSEKFLQNPKRIEVNTPYSTAETIEHCFVATYPQYSKKFGLVQKLIREQDAI 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 KNAI+FC+ + V+ L + F V A+ G + Q+ R L ++G ++ +A+D+A Sbjct: 246 KNAIIFCNQKKDVASLCCALEKQGFSVCAIHGNMDQRSRIKILDSFKEGTIQLMVASDLA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARG+D+PD+ V + ++ + PEN +HR GRTGRAGR G + ++ Sbjct: 306 ARGLDIPDVGHVFNFDVPNRPENYIHRIGRTGRAGRSGKAFTLV 349 >gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895] gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895] Length = 486 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 115/346 (33%), Positives = 195/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I EA + T +Q + P L+ KD++ AQTGSGKT AF + + + L + Sbjct: 74 VPELI-EACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQ 132 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 133 QPY------YACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 186 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184 I++ TPGRL DH+ KG + L+ +V+DEAD +LD+ F ++ IL + P K R + Sbjct: 187 IIIATPGRLMDHLENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRILKNIPTKGRTTYL 246 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 247 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEFIG 306 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K IVF T+A+ R + + F AL G+L+Q +R+ AL + + G+ + +ATDVA Sbjct: 307 KTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATDVA 366 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P ++LVI+ ++ + ++ +HR GRT RAGR G SV ++ Q Sbjct: 367 ARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQ 412 >gi|317404068|gb|EFV84523.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54] Length = 462 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 131/385 (34%), Positives = 208/385 (54%), Gaps = 14/385 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77 G+ +T +Q L L +D++ A+TGSGKT AFGL + L PA AP A Sbjct: 23 GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQKL-------DPARLAPQA 75 Query: 78 LAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 L + PTRELA QV +EL L + V + GG + + L GAHIVVGTPGR+ Sbjct: 76 LLLCPTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAESLARGAHIVVGTPGRIQ 135 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 DH+ L++S L +VLDEAD M+D+GF DDI I P KR+ L+FSAT I L Sbjct: 136 DHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAKRQTLLFSATYPDNIRKL 195 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 + + ++ V + +++ S I+ + ++R +A+ +L + + + FC+T+ Sbjct: 196 SARFLRNPAEVKVEAQH-DASRIEQIFYEIDPAERLDAVATLLAHFRPVSTLAFCNTKIR 254 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 + L +AL+G+L Q+ER L + V +ATDVAARG+D+ +L V Sbjct: 255 SHDLVERLQAAGISALALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAV 314 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376 I+ +++ + E +HR GR+GR +KG+++ + + R A + + + W ++ Sbjct: 315 INVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLIEQYQGAPLTWG---DLK 371 Query: 377 AIRERDAQRILQDPLFLDSIQGDEK 401 ++R + A R L+ P+ IQG +K Sbjct: 372 SLRPK-ADRPLRAPMVTLCIQGGKK 395 >gi|223056271|gb|ACM80368.1| vasa [Lytechinus variegatus] Length = 679 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 179/315 (56%), Gaps = 8/315 (2%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELE 95 D++ AQTGSGKT AF L + + ++ ++ FS PLAL ++PTRELA Q+ E Sbjct: 269 DLMACAQTGSGKTAAFLLPIITNMITQSGCVSCFSVVQEPLALIVSPTRELASQIQNEAR 328 Query: 96 WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155 T + V GG SV + R++QNG I+V TPGR+ D I + + LK ++LD Sbjct: 329 KFCRNTSLRPVVIYGGTSVSHQTREVQNGCSILVATPGRMHDFIGRGYIGLGKLKYLILD 388 Query: 156 EADEMLDLGFRDDIEFILDS---SPK-KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 EAD M+D+GF +I+ ++D PK +R+ LMFSAT P I A+ Y D + + + Sbjct: 389 EADRMVDMGFGPEIQKLIDHPHMPPKGERQTLMFSATFPPEIQEKARMYLNDYLFLTVGR 448 Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ 270 SDI+ R + V ++ ++ ILR + +VF T+ + +L++ F Sbjct: 449 VGGAASDIEQRVLSVKQYEKREKLMEILRDQNEDDRTLVFVETKRNADFLATLLSQSDFH 508 Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330 ++ G+ QQER AL+ + GRA V +AT VAARG+D+P ++ V++ +L S+ + +H Sbjct: 509 ATSIHGDRQQQEREEALRDFKIGRAPVLVATSVAARGLDIPKVKHVVNYDLPSDIDEYVH 568 Query: 331 RSGRTGRAGRKGMSV 345 R GRTGR G G S Sbjct: 569 RIGRTGRVGNTGRST 583 >gi|91216282|ref|ZP_01253249.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755] gi|91185420|gb|EAS71796.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755] Length = 423 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 124/338 (36%), Positives = 188/338 (55%), Gaps = 6/338 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--RFS 70 +A+S +GY T +QE + L KDVL SAQTG+GKT F L L LL++ R Sbjct: 14 KAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQ-LLSQTPPLRNR 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A L + PTRELA QV + ++ + V GGV+ + L+NG ++V Sbjct: 73 PVRA---LILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTLRNGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D L+++ ++ +VLDEAD MLD+GF DI+ I+ PK+R+ L+FSAT S Sbjct: 130 TPGRLIDLNNQGLLSLAKVEILVLDEADRMLDMGFLRDIKKIMKLIPKQRQTLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + K+ V V EN I+ + VA + + ++ ++ + +VF Sbjct: 190 REIRSLASEFLKNPVSVESTPENTTVEAIEQQVYRVAKEKKTDLLIKLISEGNWEQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ K L A+ G SQ R+ AL + G +V +ATD+A+RG+D+ Sbjct: 250 SRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKVLVATDIASRGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL + E+ +HR GRTGRAG G++V ++ Sbjct: 310 PLLPYVVNFELPNVSEDYVHRIGRTGRAGASGLAVSLV 347 >gi|71281612|ref|YP_268332.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H] gi|71147352|gb|AAZ27825.1| ATP-dependent RNA helicase, DEAD box family [Colwellia psychrerythraea 34H] Length = 455 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 202/371 (54%), Gaps = 35/371 (9%) Query: 19 GYVNLTSVQ-EAILNPDLREK-DVLVSAQTGSGKTVAFGLAL-------------ASTLL 63 GY NLT +Q EAI P +R+ D+L SAQTG+GKT AF L + ++T Sbjct: 20 GYKNLTPIQQEAI--PVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAAKSSTTST 77 Query: 64 AEN---DRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHR 116 EN ++ + A AL + PTRELA QV + ++L K+GVV GG + Sbjct: 78 DENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVY----GGGKMAS 133 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + + L+ G ++V TPGRL +H+ + +++S +K +VLDEAD MLD+GF DIE +L + Sbjct: 134 QTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAV 193 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 K + LMFSAT S + +LA K ++++ EN I V + + Sbjct: 194 KHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLS 253 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 ++ + + +VF T+ S + K L + G+ +Q R+ AL+ +G+ R Sbjct: 254 ELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVR 313 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP------- 349 V +ATDVAARG+D+PDL V++ L PE+ +HR GRTGRAG+ G ++ ++ Sbjct: 314 VLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFL 373 Query: 350 QNMQRRAERLF 360 +N+++ ER F Sbjct: 374 ENIEQLIERKF 384 >gi|53718338|ref|YP_107324.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei K96243] gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344] gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4] gi|126450332|ref|YP_001081986.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC 10247] gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 305] gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei Pakistan 9] gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei K96243] gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344] gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247] gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 305] gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei Pakistan 9] gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4] Length = 485 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|332993053|gb|AEF03108.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas sp. SN2] Length = 466 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 118/345 (34%), Positives = 198/345 (57%), Gaps = 14/345 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L R + LT +QE + P ++ KD++ S++TGSGKT+AF + + ++++ + Sbjct: 16 LESRNFTELTEIQEKSMLPAIQGKDIIASSKTGSGKTLAFLIPAINRMMSQ--KALSRQD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P AL +APTRELA QV E + + + + +GG + + + + L+ HI+VGT GR Sbjct: 74 PRALILAPTRELAKQVFIEAKTMCTGLNLSCTLVVGGENYNDQVKALRRNPHIIVGTAGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI-SPA 192 + DH++ K + ++ L+ ++ DEAD MLDLGF + + I + ++ +KR+ ++FSAT+ S Sbjct: 134 VADHLKDKSIFLNGLELLIFDEADRMLDLGFSEQLNMINEFANHRKRQTMLFSATLDSIE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-----A 247 + + K AVRV++ H DI + + +A++ +H N A Sbjct: 194 LNYMTARLTKAAVRVSVGDSTAHHGDIQQQCFFADNIEHKDALL----HHEISNRTYNQA 249 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF +TR R T +L + + +AL G+L Q +R+ + G+ V + TDVA+RG Sbjct: 250 IVFTATREDTDRLTTMLNKDKLEAIALRGDLPQNQRAAIMSEFARGQHSVLVTTDVASRG 309 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 +DL + LVI+ +L N + +HR GRTGRAG+KG + FV P++ Sbjct: 310 LDLSKVGLVINFDLPKNADEYIHRIGRTGRAGQKGEAASFVGPRD 354 >gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans] gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans] Length = 525 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 116/346 (33%), Positives = 193/346 (55%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I EA Y T +Q + P L KD++ AQTGSGKT AF + + + L + Sbjct: 113 VPELI-EACENLKYSKPTPIQAEAIPPALEGKDIIGLAQTGSGKTAAFAIPILNQLWHDQ 171 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + A +APTRELA Q+ + L GV +GG+++ + RDL H Sbjct: 172 QPY------YACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMRKPH 225 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184 I++ TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P + R + Sbjct: 226 IIIATPGRLMDHLENTKGFSMRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTYL 285 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 286 FSATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLIQTLMVVPGGLKNTFLIYLLNEFLG 345 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K AIVF T+A+ R + F AL G+L+Q +R+ AL + + GR + +ATDVA Sbjct: 346 KTAIVFTRTKANAERIATLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRSILVATDVA 405 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++VI+ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 406 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 451 >gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 112] Length = 419 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 14] gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 9] Length = 414 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329] Length = 522 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 183/339 (53%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L N Sbjct: 12 ILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ AL + PTRELA QV +E ++Y + + AV GGV ++ + L+ GA ++V Sbjct: 70 RANQVRALILTPTRELAAQV-QENVFMYGRHLPLSSAVVFGGVKINPQMLRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V +++ N ++ + + +V +++ K +V Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L E A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEIGKAISLV 347 >gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910] gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910] Length = 434 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 185/340 (54%), Gaps = 3/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +A+ E+GY T +QE + L +D L AQTG+GKT AF + + L ++ Sbjct: 7 NLIEPIAKAIQEQGYTTPTPIQERSIPDILDGRDFLGCAQTGTGKTAAFSIPILQNL-SK 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N P AL + PTRELA+Q+ + + V GGV + L+ G Sbjct: 66 NK--IPNKHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALKKGV 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D I +++ +L+ VLDEAD MLD+GF D++ ++ P++R+ L F Sbjct: 124 DILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRVIKLLPQRRQTLFF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA + + V+V + + I V ++ N + +IL+ + Sbjct: 184 SATMPGEIQKLANSILNNPVKVEVTPVSSTADTIKQSVYFVEKDNKLNLLSHILKNDISD 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + ++ L + A+ G SQ R NAL + G+ RV +ATD+AA Sbjct: 244 SVLVFARTKHGADKISRKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLVATDIAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L+ VI+ ELS E +HR GRTGRAG +G S+ Sbjct: 304 RGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGTSI 343 >gi|114799942|ref|YP_759839.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444] gi|114740116|gb|ABI78241.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444] Length = 464 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 115/332 (34%), Positives = 184/332 (55%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 +L++ GY T +QE + ++ +D++ AQTG+GKT+AF + L + N +P Sbjct: 21 SLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRL-SRNASPAPVR 79 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L +APTRELA Q+ A + V + GG + + R L+ GAHI+V TPG Sbjct: 80 GTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVATPG 139 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + +++ ++ ++LDEAD+MLDLGF + I + P KR+ L FSAT+ A+ Sbjct: 140 RLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMPKAV 199 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +LA + ++ V++A I+ R V ++ + ++ +R ++AIVF T Sbjct: 200 ESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKIRDPELRSAIVFTRT 259 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + K LA+ VA+ G SQ +R AL+ + GR + +ATD+AARGI + L Sbjct: 260 KHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHVDAL 319 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VI+ +L PE +HR GRT RAG G+++ Sbjct: 320 THVINYDLPDVPEQFVHRIGRTARAGNSGVAI 351 >gi|307105200|gb|EFN53450.1| hypothetical protein CHLNCDRAFT_36420 [Chlorella variabilis] Length = 421 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 200/369 (54%), Gaps = 11/369 (2%) Query: 12 GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FS 70 E + R + + + +Q L L +D++ A TGSGKT+AFGL + A+++ + Sbjct: 15 AELHATRSFQHPSPIQAQCLPLALSGRDLVGIAATGSGKTLAFGLPALRHIRAQSEAGVA 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P+AL IAPTRELA+Q+ LE ++ G+ GGV + L+ GA IVV Sbjct: 75 TGKKPVALVIAPTRELALQICAVLEEAGSQCGISTVCVYGGVPKREQVAALRKGAAIVVA 134 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + + +VLDEAD MLDLGF I I + R+ LMFSAT Sbjct: 135 TPGRLEDLLEDGACRLDEVSYLVLDEADRMLDLGFEPHIRAIAGKTRADRQTLMFSATWP 194 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN- 246 PAI LA + VRV I S++ S V+ + D RD + +L RYH +++ Sbjct: 195 PAIRKLASEFLCHPVRVTIGSQDLAASH-SVTQVIEVIEDRARDGRLHELLQRYHASRSN 253 Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F + R ++L ++ A+ G++SQ +RS+A++ + G + +ATDVAA Sbjct: 254 RVIIFVLYKKEAVRVEQLLQRKGWKAAAIHGDISQVQRSSAVEQFKSGAVPLLVATDVAA 313 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL---FR 361 RG+D+PD+E V++ E+ +HR GRTGRAG+ G + F + N + RA L R Sbjct: 314 RGLDIPDVEAVLNYSFPLTTEDYVHRIGRTGRAGKTGKAHTFFVGNNDKPRAGELINVLR 373 Query: 362 EANVSVVWE 370 EA +V E Sbjct: 374 EAKQTVPEE 382 >gi|294852360|ref|ZP_06793033.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026] gi|294820949|gb|EFG37948.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026] Length = 488 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 198/375 (52%), Gaps = 9/375 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I V+ + + G +Q + L +D+L AQTGSGKT AF L + ++ Sbjct: 94 ITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGRDILGIAQTGSGKTAAFSLPILQKIIGLG 153 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 D+ P +A AL +APTRELAVQ+ + + + + A+ +GGVS + + + G Sbjct: 154 DKRRPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGID 212 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL D +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FS Sbjct: 213 VLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFS 272 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I +LA+ +D VRV +A + S+I V ++ + +L ++ Sbjct: 273 ATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRS 332 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + L + V A+ G SQ R AL RDG R+ +ATD+AAR Sbjct: 333 VIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAAR 392 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE 362 GID+P + V++ +L PE +HR GRTGR G G S+ + ++ R ER+ R Sbjct: 393 GIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRS 452 Query: 363 ----ANVSVVWEPAP 373 + V PAP Sbjct: 453 KLSIKDAPVKLAPAP 467 >gi|262369669|ref|ZP_06062997.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046] gi|262315737|gb|EEY96776.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046] Length = 383 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 199/346 (57%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + A+ G+ ++T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKRAIDALGFKDMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLVSVINDLLNN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121 + R+ P AL +APTRELA+Q+ + + L + + V +GGV +++ L Sbjct: 69 PIQEQRYR--GEPRALILAPTRELALQIESDAKELTKFSDLHVVTLLGGVDFDKQKAQLD 126 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 + I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 KKPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +VA SD+ + +IL Sbjct: 187 RQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKSDKYKLLQDIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R + ++F + R V + L ++VV LSGE++Q +R L ++G+ + I Sbjct: 247 RDEPIEKVMIFANRRDQVRKLYDNLKRDGYKVVMLSGEIAQDKRLKMLDQFKNGQHNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + V++ L ++ +HR GRTGRAG +G+S+ Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTRGVSI 352 >gi|77461504|ref|YP_351011.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1] gi|77385507|gb|ABA77020.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1] Length = 622 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 189/341 (55%), Gaps = 8/341 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ + GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + +YA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-IYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V PGRL D +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FSA Sbjct: 133 LVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSA 192 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S IT LA + R+ + N I+ R + S + + +++ + Sbjct: 193 TFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAGAWEQV 252 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AARG Sbjct: 253 LVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRILVATDIAARG 312 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 313 LDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|219123243|ref|XP_002181938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406539|gb|EEC46478.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 433 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 111/343 (32%), Positives = 190/343 (55%), Gaps = 6/343 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + + EA + T +Q ++L +D++ A+TGSGKT AF L + LL + Sbjct: 48 ETLQEACDRLEWKTATRIQASVLPEAFEGRDIIGLAETGSGKTGAFCLPILQGLLRK--- 104 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P AL + PTRELA Q+ + ++ L G +GGV + L H+V Sbjct: 105 --PVKGTAALILTPTRELAFQILQVVQGLGQAMGATAVCVVGGVDRTSQAIALGRNPHVV 162 Query: 129 VGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 + TPGRL DH++ KG N++ ++ +VLDEAD ML + F +++ ILD+ P++R+ L+FSA Sbjct: 163 IATPGRLLDHLKDTKGFNLNKVRYLVLDEADRMLSMDFEEELHQILDNMPEQRQTLLFSA 222 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T++ + L + KD V+V ++++ + + + + +D + ++ H ++ Sbjct: 223 TMTTQVAKLERASLKDPVKVQVSTKFQTPKQLLQSYLFIPAKYKDCYLTYLINEHAGQSI 282 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF +T +V R +L F V L G++ Q +R ALQ G + + TDVA+RG Sbjct: 283 LVFGATCNNVQRLALMLRNLGFPAVCLHGQMDQSKRLGALQKFSSGDRTILLCTDVASRG 342 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +DLP ++LVI+ +L + + +HR GRT RAG+ G ++ ++ Q Sbjct: 343 LDLPQVDLVINFDLPGHGKEYIHRVGRTARAGKSGRAIAMVTQ 385 >gi|237799048|ref|ZP_04587509.1| helicase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021902|gb|EGI01959.1| helicase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 332 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 114/327 (34%), Positives = 188/327 (57%), Gaps = 12/327 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++ A+ GY +++Q+ + L D++ AQTG+GKT AF L + Sbjct: 15 PNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH------- 66 Query: 68 RFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124 R P+ P AL +APTRELA+QV E YAK GV V GG + + + ++NG Sbjct: 67 RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A IVV TPGRLCDH+R ++ + +VLDEADEML LGF DD+E I + P+ R+ ++ Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ +I +A+ + +D V I ++ + + I+ +LV + +A++++L Sbjct: 186 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F T+ + L ++ AL+G+++Q +R ++ ++DGR + +ATDVA Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHR 331 ARG+D+P + V + ++ +PE+ +HR Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHR 332 >gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase domain-containing protein [Geobacter uraniireducens Rf4] gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens Rf4] Length = 453 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 206/386 (53%), Gaps = 19/386 (4%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE + P ++ +A++ GY T +QE + L KD++ SAQTG+GKT AF L Sbjct: 3 FETLQLSPSIL-KAIAVCGYTTPTPIQEQAIPLALAGKDLIASAQTGTGKTAAFTLPALQ 61 Query: 61 TLLAENDRFSP--ASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSV 114 L SP P L + PTRELA QV + +++ ++G + +GG+ Sbjct: 62 RLSTP----SPINGKGPRILVLTPTRELANQVTDAVRNYGKFMRVRSGAI----LGGMPY 113 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 + + L ++V TPGRL DH+ +N+S L+ ++LDEAD MLD+GF DD++ I Sbjct: 114 REQLQLLSQPVDLIVATPGRLIDHLERGRINLSRLELLILDEADRMLDMGFSDDVDKIAA 173 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDN 233 ++P R+ L+F+AT+ + LA+ KD VR+ IA + H I+ R +V L ++ Sbjct: 174 AAPANRQTLLFTATMDDVMAKLAQRLLKDPVRIEIAGQKTSHDQIEQRLHVVDNLQHKNR 233 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + +++ AI+F +T+ + L AL G+++Q R+ + MR G Sbjct: 234 MLQHLIADGNLTKAIIFSATKRDADMLARELHAQGHAAAALHGDMTQNARNKTITNMRRG 293 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + R+ +ATDVAARG+D+ + VI+ +L E+ +HR GRTGRAG G+++ + N Sbjct: 294 KVRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFVSLNDI 353 Query: 354 RRAERLFREANVSVVWEPAPSVEAIR 379 +R+ R ++ P +E R Sbjct: 354 NYLDRIERYTGQTLPLHVIPGLEPTR 379 >gi|282853714|ref|ZP_06263051.1| DEAD/DEAH box helicase [Propionibacterium acnes J139] gi|282583167|gb|EFB88547.1| DEAD/DEAH box helicase [Propionibacterium acnes J139] Length = 494 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 117/316 (37%), Positives = 180/316 (56%), Gaps = 6/316 (1%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDR----FSPASAPLALAIAPTRELAVQVGREL 94 D++ A+TG+GKT+AFG+ + + D + P AL + PTRELA+QV +++ Sbjct: 25 DLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI 84 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 + G V GGV + L+ G +VVGTPGRL D + K L++SH++ VVL Sbjct: 85 STAASVRGARVLTVYGGVGYESQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVL 144 Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214 DEADEMLDLGF D+E ++ +P R+ ++FSAT+ I LA++ V V + Sbjct: 145 DEADEMLDLGFLPDVENLIGRTPASRQTMLFSATMPAPIMALARSQLHRPVHVRAEGADT 204 Query: 215 QHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272 Q + D + + D+ I IL+ + + I+FC T+ + R + L + F+ Sbjct: 205 QATVPDTQQFVYQAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTR 264 Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332 A+ G+L+Q R AL+ R G A + +ATDVAARGID+ + VI+ E + + +HR Sbjct: 265 AIHGDLTQVAREKALKKFRHGDATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRI 324 Query: 333 GRTGRAGRKGMSVFVI 348 GRTGRAG KG++V ++ Sbjct: 325 GRTGRAGAKGVAVTLV 340 >gi|16331758|ref|NP_442486.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803] gi|1001719|dbj|BAA10556.1| ATP-dependent RNA helicase; DeaD [Synechocystis sp. PCC 6803] Length = 492 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 180/337 (53%), Gaps = 8/337 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L++ G+ T +Q + L +D+L +QTG+GKT AF L L DR P Sbjct: 20 QLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLM-------DRIDPE 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV ++ + + + GG S+ R+ R L+ G IVVGTP Sbjct: 73 GDLQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLERGVQIVVGTP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D I K L + ++ VVLDEADEML +GF DD++ IL +P R+ FSAT+ Sbjct: 133 GRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTRQTACFSATMPRE 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251 I L + D V + + I+ + V + A+ IL ++AI+F Sbjct: 193 IKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEMEDPESAIIFV 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + T L E V G LSQ +R + RDG+ ++ +ATD+AARG+D+ Sbjct: 253 RTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATDIAARGLDVN 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +L V++ +L N E +HR GRTGRAG+ G ++ ++ Sbjct: 313 NLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALV 349 >gi|331224537|ref|XP_003324940.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309303930|gb|EFP80521.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 521 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 194/353 (54%), Gaps = 11/353 (3%) Query: 2 KIFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 K FE IP++ EA Y T +Q + L ++D++ AQTGSGKT AF L + Sbjct: 75 KTFEELGLIPELC-EACRTLNYKRPTPIQAESIPYALEDRDIIGLAQTGSGKTAAFALPV 133 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 +L + F +APTRELA Q+ ++ + L + GV AV +GG+ + + Sbjct: 134 LQSLWNDPKPF------FCCVLAPTRELAYQISQQFDALGSTIGVKTAVIVGGIDMMSQA 187 Query: 119 RDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 L HI+V TPGRL DH+ KG ++ +LK +++DEAD +LD+ F I+ IL P Sbjct: 188 IALSKRPHIIVATPGRLHDHLENTKGFSLRNLKYLIMDEADRLLDMDFGPVIDKILKVIP 247 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 ++RR +FSAT++ + L + V+V ++++ + + ++D +V Sbjct: 248 RERRTYLFSATMTTKVAKLQRASLVSPVKVQMSTKYDTVDGLVQLYMFFPFKNKDAYLVY 307 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ K+ I+F T +R + +L F + L G+LSQ R ++L + G + Sbjct: 308 LVNELSGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLNQFKSGNRSI 367 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +ATDVA+RG+D+P ++ VI+ +L +N ++ +HR GRT RAGR G +V ++ Q Sbjct: 368 LVATDVASRGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQ 420 >gi|260545280|ref|ZP_05821021.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038] gi|260754789|ref|ZP_05867137.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758012|ref|ZP_05870360.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260761835|ref|ZP_05874178.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883806|ref|ZP_05895420.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261214040|ref|ZP_05928321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260096687|gb|EEW80562.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038] gi|260668330|gb|EEX55270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672267|gb|EEX59088.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674897|gb|EEX61718.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260873334|gb|EEX80403.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260915647|gb|EEX82508.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 458 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 33 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 92 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 331 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391 Query: 371 PAP 373 PAP Sbjct: 392 PAP 394 >gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp. holarctica 257] gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp. holarctica 257] Length = 441 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 186/339 (54%), Gaps = 2/339 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL + Sbjct: 11 LICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G I++ Sbjct: 69 AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L VLDEAD MLD+GF +D++ I + PKK + LMFSAT Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + V+ N I + + S++ NA++++++ +V Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AARGID Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L VI+ +LS+ E+ +HR GRTGRAG++G+++ ++ Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLV 347 >gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. holarctica LVS] gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp. holarctica OSU18] gi|167010034|ref|ZP_02274965.1| ATP-dependent RNA helicase [Francisella tularensis subsp. holarctica FSC200] gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. holarctica LVS] gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp. holarctica OSU18] Length = 441 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 186/339 (54%), Gaps = 2/339 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL + Sbjct: 11 LICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G I++ Sbjct: 69 AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L VLDEAD MLD+GF +D++ I + PKK + LMFSAT Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + V+ N I + + S++ NA++++++ +V Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AARGID Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L VI+ +LS+ E+ +HR GRTGRAG++G+++ ++ Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLV 347 >gi|15894071|ref|NP_347420.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824] gi|15023670|gb|AAK78760.1|AE007593_8 ATP-dependent RNA helicase, superfamily II [Clostridium acetobutylicum ATCC 824] gi|325508198|gb|ADZ19834.1| ATP-dependent RNA helicase, superfamily II [Clostridium acetobutylicum EA 2018] Length = 374 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/354 (33%), Positives = 196/354 (55%), Gaps = 12/354 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + + E L + G T VQ ++ +DV+ AQTG+GKT+AF LL Sbjct: 8 ISEALVEVLKKSGITEPTPVQAESISHIKGGRDVIGEAQTGTGKTLAF-------LLPIF 60 Query: 67 DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + SP SA AL + PTRELA+Q+ + L + + GG + +++ L+ Sbjct: 61 ENISPTLSAVQALIVTPTRELALQITEQALKLKEAKDINILAAYGGKDIASQQKKLRGST 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+++ TPGRL D I+ K +++ LK+ VLDEAD+ML +GF++D+E IL ++PKKR+ML F Sbjct: 121 HLIIATPGRLLDLIQRKTVDLRKLKSFVLDEADQMLLMGFKNDVEEILKNAPKKRQMLCF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHG 243 SATISPA+ LA Y + + I+++ ++ + + +V +DR + L+ Sbjct: 181 SATISPAVKKLAYRYMTNP--LTISTKKKEVTLENIEQFVVETTDRKKLEDLCTALKQDN 238 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+F T+ V L F L +L+Q +R ++ R+G + +ATDV Sbjct: 239 PFMAIIFGRTKRRVDELEVELYRRGFDCQKLHSDLTQTKRERIMKSFRNGDFQYLLATDV 298 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 A+RG+D+ + + + ++ NPE+ +HR GRTGRAG +G + + +R+ E Sbjct: 299 ASRGLDISGVSHIYNYDVPDNPESYIHRIGRTGRAGEEGYTCLFAAERDKRKLE 352 >gi|314983245|gb|EFT27337.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3] gi|315090093|gb|EFT62069.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4] Length = 494 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 117/316 (37%), Positives = 180/316 (56%), Gaps = 6/316 (1%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDR----FSPASAPLALAIAPTRELAVQVGREL 94 D++ A+TG+GKT+AFG+ + + D + P AL + PTRELA+QV +++ Sbjct: 25 DLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI 84 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 + G V GGV + L+ G +VVGTPGRL D + K L++SH++ VVL Sbjct: 85 STAASVRGARVLTVYGGVGYESQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVL 144 Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214 DEADEMLDLGF D+E ++ +P R+ ++FSAT+ I LA++ V V + Sbjct: 145 DEADEMLDLGFLPDVENLIGRTPASRQTMLFSATMPAPIMALARSQLHRPVHVRAEGADT 204 Query: 215 QHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272 Q + D + + D+ I IL+ + + I+FC T+ + R + L + F+ Sbjct: 205 QATVPDTQQFVYQAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTR 264 Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332 A+ G+L+Q R AL+ R G A + +ATDVAARGID+ + VI+ E + + +HR Sbjct: 265 AIHGDLTQVAREKALKKFRHGDATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRI 324 Query: 333 GRTGRAGRKGMSVFVI 348 GRTGRAG KG++V ++ Sbjct: 325 GRTGRAGAKGVAVTLV 340 >gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81] Length = 445 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 116/343 (33%), Positives = 188/343 (54%), Gaps = 14/343 (4%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 +++Q+ + P L+ +DV+ AQ+G+GKT F +++ T+ + AL ++PT Sbjct: 64 SAIQQRAIAPILKGRDVIAQAQSGTGKTATFSISVLQTIDTTRRQTQ------ALILSPT 117 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA Q+ + L V CIGG S+ + R L +G H+V GTPGR+ D I+ + Sbjct: 118 RELATQIQSVVLALGDYMNVQCHACIGGTSIGEDIRKLDHGQHVVSGTPGRVFDMIKRRN 177 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L +K ++LDEADEML GF++ I + P ++++ SAT+ + + + D Sbjct: 178 LQTRDIKMLILDEADEMLSKGFKEQIYDVYRYLPPSTQVVILSATLPHDVLDMTSKFMTD 237 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260 VRV + + I + VA+ + + + ++ A++FC+TR V Sbjct: 238 PVRVLVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 295 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T+ + E F V A+ GE+ Q+ER +Q R G +RV I TDV ARGID+ + LVI+ + Sbjct: 296 TEKMREANFTVAAMHGEMPQKERDAIMQEFRSGASRVLITTDVWARGIDVQQVSLVINYD 355 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 L SN EN +HR GR+GR GRKG+++ + N+ R E+ + Sbjct: 356 LPSNRENYIHRIGRSGRFGRKGVAINFVKNDDVNILRDIEQYY 398 >gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 576] gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 576] Length = 485 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|254388923|ref|ZP_05004154.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC 27064] gi|197702641|gb|EDY48453.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC 27064] Length = 891 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 183/348 (52%), Gaps = 10/348 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67 EAL G +N +QE L L DV+ A+TG+GKT+ FGL L + D Sbjct: 55 TAEALEAVGILNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEA 114 Query: 68 -RFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 R P + AP AL + PTREL QV +L V V GG + + L+ Sbjct: 115 GRARPDQLSEAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALRK 174 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G ++VGTPGRL D K L++S ++A+VLDEADEMLDLGF D+E I+ P KR+ + Sbjct: 175 GVDVIVGTPGRLLDLAGQKKLDLSQVRALVLDEADEMLDLGFLPDVEKIIQLLPAKRQTM 234 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS---ENRQHSDIDYRAVLVALSDRDNAIVNILR 240 +FSAT+ A+ LA+ Y + + E ++I R D+ + IL+ Sbjct: 235 LFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANITQRVYRAHSMDKPEMVSRILQ 294 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G A++FC T+ + + LA F A+ G+L Q R AL+ R+G+ V + Sbjct: 295 AEGRGLAMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVC 354 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ + VI+ + + + LHR GRTGRAG G +V ++ Sbjct: 355 TDVAARGIDVEGVTHVINYQSPEDEKTYLHRVGRTGRAGASGTAVTLV 402 >gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571] gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571] Length = 540 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 180/332 (54%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E +V T +Q + L KD++ AQTG+GKT AFGL + L R P S Sbjct: 16 ALTEEKHVTPTPIQAQAIPAILSGKDLIGIAQTGTGKTAAFGLPILDHLSRNPRRIEPRS 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + L ++PTREL+ Q+ L+ + + IGGV + R+ R LQ G ++V TPG Sbjct: 76 CRV-LILSPTRELSGQILDNLDKFGRHIRLSTTLAIGGVPMGRQIRALQRGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + L + ++ VLDEAD+MLD+GF I+ I+ P KR L FSAT+ AI Sbjct: 135 RLMDLVENNALKLDTVEVFVLDEADQMLDMGFVHAIKAIVRRLPHKRHSLFFSATMPSAI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + ++ V V + + +D R + V + + +L A+VF T Sbjct: 195 ADLAASMLRNPVTVAVTPVAKTADRVDQRVIFVEKPAKAKMLAEVLSTEEVDRALVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + +VLA + A+ G SQ +R L R+G R +ATD+AARGID+ + Sbjct: 255 KHGADKVVQVLARAGHKAEAIHGNKSQNQRDRVLAAFREGSLRTLVATDIAARGIDVTGV 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VI+ +L + PE+ +HR GRT RAGR+G+++ Sbjct: 315 SHVINYDLPNVPESYVHRIGRTARAGREGIAI 346 >gi|269104380|ref|ZP_06157076.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp. damselae CIP 102761] gi|268161020|gb|EEZ39517.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp. damselae CIP 102761] Length = 437 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 116/323 (35%), Positives = 185/323 (57%), Gaps = 7/323 (2%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T +Q L L +D++ +TGSGKT AFGL L + L + R L + P Sbjct: 1 MTPIQAQSLPIILAGQDIIAQGKTGSGKTAAFGLGLLNNLNVKRFRVQ------TLVLCP 54 Query: 83 TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 TRELA QV +E+ L A + V GG+ + L++GAHI+VGTPGR+ +H+R Sbjct: 55 TRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPGRVEEHLRK 114 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201 L++ +L +VLDEAD ML++GF+D I+ ++D +PK+R+ L+FSAT I ++A + Sbjct: 115 GNLSLDNLNTLVLDEADRMLEMGFQDAIDAVIDCAPKQRQTLLFSATYPTQIASIANSIM 174 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 V + + + S + + +R +A+ +L H ++A++FC+T+ Sbjct: 175 NKPAMVKVEATHDNSSISQHFYKVDNNEERMDAVRLLLAKHHPESAVIFCNTKREAQEVA 234 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 L + F +AL G+L Q+ER L + + + +ATDVAARG+D+ L+ VI+ L Sbjct: 235 DTLVDEGFSALALHGDLEQRERDRTLVRLANKSCSILVATDVAARGLDIDALDAVINYHL 294 Query: 322 SSNPENLLHRSGRTGRAGRKGMS 344 + + E +HR GRTGRAG KG++ Sbjct: 295 ARDTEVHVHRIGRTGRAGSKGIA 317 >gi|259416782|ref|ZP_05740702.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B] gi|259348221|gb|EEW59998.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B] Length = 490 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 187/347 (53%), Gaps = 13/347 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY + T +Q + L +DVL AQTG+GKT +F L + + L Sbjct: 11 PKVL-KAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMITRLARGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + A+ IGGVS + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + RV IA + I+ V+ S +D + ++ Sbjct: 187 TMAPEIERITNTFLSGPERVEIARQATTSETIEQAVVMFKASRKDREGSEKRRVLRELIN 246 Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G KNAI+FC+ + V K L ++ + + G+L Q +R+ L RDG ++ Sbjct: 247 QEGEAVKNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGTLKIL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +A+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGR G ++ Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRNGKAI 353 >gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei NCTC 13177] Length = 430 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158] gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158] Length = 480 Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 134/384 (34%), Positives = 206/384 (53%), Gaps = 13/384 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + T AE+ Sbjct: 17 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHR-- 74 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 75 NAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVV 134 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT Sbjct: 135 ATPGRLLDHMQQKTIDLSSLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATF 194 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + +A N + + V + + +++R H +V Sbjct: 195 SDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 254 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID Sbjct: 255 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALTEFKNSTLQVLVATDIAARGID 314 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365 + L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 315 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 374 Query: 366 SVV--WEPAPSV--EAIRERDAQR 385 V+ +EP P+ E I++R Q+ Sbjct: 375 EVIAGFEPDPNAKPEPIQQRRGQQ 398 >gi|331009646|gb|EGH89702.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 625 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 194/342 (56%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFAPPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT+LA + R+ + N I+ R +A + + + + +++ + Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353 >gi|167950812|ref|ZP_02537886.1| DEAD/DEAH box helicase domain protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 415 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 198/373 (53%), Gaps = 9/373 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSP 71 A+SE+GY T VQ+ + L +DV+ AQTG+GKT F L L L A+ P Sbjct: 15 AVSEQGYTQTTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFTLPLLELLEEHAQGKGRRP 74 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A L + P RELA QVG +E + V GGV ++ + L++G I+V T Sbjct: 75 VRA---LVLTPNRELAAQVGESVEQYGKYLPLKSTVIFGGVKINPQIEKLRHGVDILVAT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+ K L++SH++ +VLDEAD MLD+GF DI +L P +R+ L+FSAT S Sbjct: 132 PGRLLDHVSQKTLDLSHIEILVLDEADRMLDMGFIHDIRKVLRLLPHERQNLLFSATYSQ 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + ++ +A N + V + + + +++ + + +VF Sbjct: 192 EIKRLASDLLNQPEQIEVARRNTAAELVSQVVYPVDKARKRELLSHMIGANNWRQVLVFT 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 252 RTKHGANRLAQQLEKDGLSAAAIHGNKSQGARTRALANFKSGEVRVLVATDIAARGLDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367 L V++ EL + PE+ +HR GRTGRAG +G +V ++ + R ERL R+ V Sbjct: 312 QLPHVVNYELPNVPEDYVHRIGRTGRAGNEGEAVSLVCIDEHKLLRDIERLLKRKITEKV 371 Query: 368 VWEPAPSVEAIRE 380 + P +A R+ Sbjct: 372 LPGYEPGTQASRQ 384 >gi|33593984|ref|NP_881628.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|33564058|emb|CAE43326.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|332383401|gb|AEE68248.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS] Length = 574 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 209/361 (57%), Gaps = 19/361 (5%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE++ P ++ ALSE G+ TSVQ A + + D++VS+QTGSGKT AF L + Sbjct: 15 FEDLGLAPTIL-SALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALN 73 Query: 61 TLLAENDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115 + + P + + L + PTRELA+QV + Y + G+ A +GG+ Sbjct: 74 RIAHQ-----PGNKGVGVQVLVLTPTRELALQVA-DATASYGRNLPGLRTATVVGGMPYG 127 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + + L ++V TPGRL DH++ + ++ + +VLDEAD MLD+GF +DIE I++ Sbjct: 128 AQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIER 187 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233 PK+R+ L+FSAT+ ++ LA+ ++ R+ IA ++H++I +++L A + + Sbjct: 188 LPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANI-TQSLLYADDAAHKMR 246 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + ++LR AIVF +T+ LA+ F AL G+++Q++R+ L ++ G Sbjct: 247 LLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRG 306 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + RV +ATDVAARGID+ + ++ +L E+ +HR GRTGRAGR G + F + + + Sbjct: 307 QLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQA-FTLATHAE 365 Query: 354 R 354 R Sbjct: 366 R 366 >gi|156083170|ref|XP_001609069.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein [Babesia bovis T2Bo] gi|154796319|gb|EDO05501.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein [Babesia bovis] Length = 433 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 121/380 (31%), Positives = 202/380 (53%), Gaps = 21/380 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A G+ T +Q A + L +DV+ A TGSGKT AF + + LL + R Sbjct: 54 LCKACQSMGWQAPTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQRI- 112 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + +AP+REL Q+ + L + + V V IGGV + + L H++V Sbjct: 113 -----YCVVLAPSRELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPHVIVA 167 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 +PGRL DH+ KG ++S +K +V+DEAD +L F ++++ I+ + P +R+ +FSAT+ Sbjct: 168 SPGRLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQTFLFSATM 227 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + ++ L K KD + V + + ++D R +LV + + +L Y+ + AIV Sbjct: 228 TKKLSKLQKMALKDPISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAALLWYYATRTAIV 287 Query: 250 FCSTRASVSRFTKVLAEHLFQV---VALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 FC T R L F V L G+++Q +RS ALQ+ + G + +AT+V R Sbjct: 288 FCKTCDGAQRCAAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGR 347 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR-- 361 G+DLP +ELVI+ ++ ++ +HR GRT RAGR G+++ V+ Q + +R E Sbjct: 348 GLDLPMVELVINFDIPECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRIELALNKK 407 Query: 362 -EANVSVVWE-----PAPSV 375 E +++W+ P+P V Sbjct: 408 LEEFTTLLWQSMLSVPSPYV 427 >gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b] gi|126454229|ref|YP_001065030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106a] gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106b] gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei S13] gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1710a] gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b] gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106a] gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei S13] gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106b] gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1710a] Length = 485 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|282909394|ref|ZP_06317209.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282326664|gb|EFB56962.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] Length = 467 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 176/315 (55%), Gaps = 9/315 (2%) Query: 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99 +L AQTG+GKT AFG+ L ++ + +L +APTRELA+QV +L Sbjct: 3 ILGQAQTGTGKTGAFGIPLIEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSR 55 Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 GV V GG+ + R+ + L+ G IVVGTPGR+ DH+ + L + ++LDEADE Sbjct: 56 GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 115 Query: 160 MLDLGFRDDIEFILDSSPK-KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218 M+++GF DD+ FI+D P +R+ ++FSAT+ AI L + + K + + Sbjct: 116 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 175 Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278 I+ +V ++ + N L H + AIVF T+ V T L ++ L G++ Sbjct: 176 IEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDI 235 Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338 +Q +R L+ ++ + + +ATDVAARG+D+ + V + ++ + E+ HR GRTGRA Sbjct: 236 TQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRA 295 Query: 339 GRKGMSV-FVIPQNM 352 G++G++V FV P M Sbjct: 296 GKEGIAVTFVNPIEM 310 >gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei B7210] Length = 427 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372 Query: 367 VV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391 >gi|166710339|ref|ZP_02241546.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 429 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 207/386 (53%), Gaps = 16/386 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + AL+ G LT +Q A++ P L +D++ +AQTGSGKT+A+ L L L Sbjct: 11 QLPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQQRLQ- 69 Query: 66 NDRFSPASAPLALA---IAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRD 120 P AP L + PTREL QV + L L A G+ + GG +++ + Sbjct: 70 ----VPEQAPRVLGGLILVPTRELVAQVAQTLLSLAAALPRGLKIVAATGGEAINPQLMA 125 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GA IV+ TPGRL D + L +S ++ +VLDEAD +LDLGF +++ IL P +R Sbjct: 126 LRGGADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAELDRILALLPAQR 185 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++ SAT PAI +LAK +D +R+ I + I A+ V R + ++L+ Sbjct: 186 QSVLVSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQHAIAVDAGQRTQLLRHLLQ 245 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H +VF ++R + + + L++ + + L GELSQ R L+ + +V +A Sbjct: 246 EHAWPQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVA 305 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR----- 354 TD+AARGID+ L V++ +L + + HR GRT RAG G ++ FV + Q+ Sbjct: 306 TDLAARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQQWRLIE 365 Query: 355 RAERLFREANVSVVWEPAPSVEAIRE 380 + + L +V +EP+P+ + R+ Sbjct: 366 KRQGLRVPTSVIEGFEPSPAEASARD 391 >gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121] gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121] Length = 617 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 203/379 (53%), Gaps = 11/379 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ ++GY + +Q + L D+L AQTG+GKT AF L L S R +P Sbjct: 21 KAVVDQGYEQPSPIQAQSIPHLLEGHDLLGQAQTGTGKTAAFALPLLS-------RINPK 73 Query: 73 SAPLAL-AIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 L +APTRELA+QV + YA+ V GG+S + R L+ G +VV Sbjct: 74 DKNTQLLVLAPTRELAIQVSEAFQT-YARNIPDFHVLPIYGGMSYDTQLRQLRRGVQVVV 132 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DHIR K L + L+A+VLDEADEML +GF DD+E+IL+ +P++R++ +FSAT+ Sbjct: 133 GTPGRVMDHIRRKTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPEQRQIALFSATM 192 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I +A + + V I ++ ++ I + V+ + +A+ IL I+ Sbjct: 193 PSVIRQVANRHLNNPKEVKIVTKTATNTSITQKYWQVSGLHKLDALTRILEMSEHDGMII 252 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+A+ + L AL+G++SQ R ++ ++ G+ + +ATDV ARG+D Sbjct: 253 FVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVERIKRGQIDILVATDVVARGLD 312 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + + V++ ++ + E+ +HR GRTGRAGR G ++ + +R + + R + Sbjct: 313 IDRISHVVNYDIPYDTESYVHRIGRTGRAGRTGNAILFVAHRERRMLQAIERATRQPIER 372 Query: 370 EPAPSVEAIRERDAQRILQ 388 P+ I + R Q Sbjct: 373 MQLPTASDINTQRVNRFKQ 391 >gi|330818246|ref|YP_004361951.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia gladioli BSR3] gi|327370639|gb|AEA61995.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia gladioli BSR3] Length = 505 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 195/370 (52%), Gaps = 7/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSPA 72 A++E GY T +Q + L D+L AQTG+GKT F L + L A + Sbjct: 15 AVNELGYTEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLNASTAAQAGGK 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL + PTRELA QV + + V GGVS++ + L+ G IVV TP Sbjct: 75 RAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 135 GRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLARLPAKRQNLLFSATFSDE 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + +A N I + V + + +++R H +VF Sbjct: 195 IKALADSLLDSPALIEVARRNTTAETIAQKIYPVDRDRKRELLTHLIREHNWFQVLVFTR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L + +A+ G SQ R+ AL + G +V +ATD+AARGID+ Sbjct: 255 TKHGANRLAEQLGKDGISALAIHGNKSQSARTRALTEFKAGTLQVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSVV 368 L V++ EL + PE+ +HR GRTGRAG G +V ++ + + R E+L RE V+ Sbjct: 315 LPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIEKLIKREIPQEVI 374 Query: 369 --WEPAPSVE 376 +EP P+ + Sbjct: 375 AGFEPDPNAK 384 >gi|326774180|ref|ZP_08233462.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505] gi|326636319|gb|EGE37223.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505] Length = 558 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 182/345 (52%), Gaps = 7/345 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69 I EAL +G + +Q L L +D++ A+TG+GKT+ FG+ L L + Sbjct: 81 ICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGW 140 Query: 70 --SPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 PAS +P AL I PTRELA QV EL AK V + GG + + DL+ GA Sbjct: 141 DEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIEDLERGAE 200 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + L+++H+ VVLDEADEMLDLGF D+E IL + R ++FS Sbjct: 201 VVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTRADRHTMLFS 260 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHG 243 AT+ A+ LA+ Y + + + +V + N + IL+ G Sbjct: 261 ATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEVVSRILQAEG 320 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + +R L F AL G+L Q R AL+ R+ + V +ATDV Sbjct: 321 RGRTIIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRNNKVDVLVATDV 380 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ D+ VI+ + + + +HR GRTGRAG G +V + Sbjct: 381 AARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFV 425 >gi|148245005|ref|YP_001219699.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius okutanii HA] gi|146326832|dbj|BAF61975.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius okutanii HA] Length = 462 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 118/361 (32%), Positives = 201/361 (55%), Gaps = 7/361 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q+ L L KDV+ +TGSGKTVAFGL L L + + Sbjct: 19 LTILGYDLMTPIQKLSLPVILSGKDVIGQGKTGSGKTVAFGLGLLQKLDVKLFKLQ---- 74 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 ++ + PTRELA QV E++ L + V V GG+S + L++G H+VVGTPG Sbjct: 75 --SIVLCPTRELANQVAVEIQKLARVINNIKVVVLCGGMSFGLQIDSLRHGVHVVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L +S++ +VLDEAD MLD+GF++ ++ I+++ P R+ L+FSAT I Sbjct: 133 RIEEHLRKGTLKLSYINTLVLDEADRMLDMGFQESVDNIIETMPTNRQTLLFSATCLDTI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 T + + + + V + N + + Y + ++R A+ +L + ++++VFC+T Sbjct: 193 TNITQRVMRSPIMVKVPLINERSTIKQYFYKINTDNERMMALRLLLAKYKPESSLVFCNT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L + F +A+ G+L Q+ER AL + + +ATDVAARG+D+ L Sbjct: 253 KRDAQKVANELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSILVATDVAARGLDIDSL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 ++VI+ +++ + + +HR GRTGRAG G++ + + + L ++ + P Sbjct: 313 DMVINFDIAHDDQVHIHRIGRTGRAGHFGIACTLYSNRETYKLDTLKLGTGDDIILDSLP 372 Query: 374 S 374 S Sbjct: 373 S 373 >gi|194365407|ref|YP_002028017.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia R551-3] gi|194348211|gb|ACF51334.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia R551-3] Length = 458 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 200/379 (52%), Gaps = 15/379 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F +P + L GY LT VQ L L +DV+ A TGSGKT AFGL L Sbjct: 1 MTDFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + R AL + PTRELA QVG+++ L TG+ + V Sbjct: 61 LQAIDPSLIRVQ------ALVLCPTRELADQVGKQIRKL--ATGIPNLKLLLLVGGVPLG 112 Query: 119 RDLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 L + H+VVGTPGR+ + R + LN+ ++ +VLDEAD MLD+GF + I I Sbjct: 113 PQLASLEGHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAG 172 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 + K R+ L+FSAT +I +A++ ++AV V + + Q I + V + R A Sbjct: 173 RTHKDRQSLLFSATFPDSIRAMARDLLREAVEVTVEGAD-QAPAIRHMFCEVEPAHRQKA 231 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +L + ++A+VFC+TR V L + F +AL G++ Q++R L ++ + Sbjct: 232 LAGLLLKYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRS 291 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +A+DVAARG+D+ +L VI+ EL ++ E+ HR GRTGRAG G+++ ++ + Sbjct: 292 CNVLVASDVAARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKT 351 Query: 355 RAERLFREANVSVVWEPAP 373 RAE + + + W+ P Sbjct: 352 RAEAIEAQMGQPLDWQKTP 370 >gi|328906158|gb|EGG25933.1| DEAD/DEAH box helicase [Propionibacterium sp. P08] Length = 686 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 133/365 (36%), Positives = 194/365 (53%), Gaps = 11/365 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64 +P I AL++ G +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 237 VPDEIVAALAKMGIAAPFRIQIAAIPDAIAGRDVLGRAATGSGKTLAFGVPLLSRLSAAP 296 Query: 65 -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E+ R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 297 REDKR------PRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFKK 350 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P+ + L Sbjct: 351 GVDLVVATPGRLVDLLETGDADLSGIAVTVLDEADHMAELGFMEAVGSILDAVPEDGQRL 410 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ A+ L K Y D V + S+ S + + A + ++ + I G Sbjct: 411 LFSATLDGAVNKLVKRYMHDPVTHEVDSDKGSVSTMTHHAFQIKPHEKVGLMCEIANRSG 470 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ SR + L AL G L+Q R+ L +DG V +ATDV Sbjct: 471 --HTIVFARTQRGASRMAEQLRGAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDV 528 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D+ LV+ + N ++ LHRSGRT RAG G V +I + +R RL+R+A Sbjct: 529 AARGIDVDDVTLVLQVDPPMNSKDYLHRSGRTARAGHDGAVVSLILPHQRRTMARLYRQA 588 Query: 364 NVSVV 368 V V Sbjct: 589 GVKPV 593 >gi|293397166|ref|ZP_06641440.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582] gi|291420637|gb|EFE93892.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582] Length = 447 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 196/371 (52%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q + L +D++ SAQTG+GKT F L + LL+++D Sbjct: 15 AVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQ-LLSKHDHAVKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G ++ + V GGVS++ + L+ G I+V TP Sbjct: 74 RPVRALILTPTRELAAQIGENVQAYSKHLRLRSLVVFGGVSINPQMMKLRGGVDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLSKLPPKRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V +A N I+ V + + ++ + +VF Sbjct: 194 IKGLASKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMIGEGDWRQVLVFNR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL +DG+ RV +ATD+AARG+D+ Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA R G ++ ++ + R ERL + + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIAL 373 Query: 369 --WEPAPSVEA 377 +EP P+++A Sbjct: 374 PGYEPDPTIKA 384 >gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp. MWYL1] gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1] Length = 632 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 135/420 (32%), Positives = 220/420 (52%), Gaps = 25/420 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ GY +++Q + L +D+L AQTG+GKT AF L L S + + Sbjct: 21 KAVADLGYEQPSAIQAQSIPYLLEGRDLLGQAQTGTGKTAAFALPLLSRIDVTDKTTQ-- 78 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L +APTRELA+QV + YA+ V GG+S + R L+ G +VVG Sbjct: 79 ----LLVLAPTRELAIQVSEAFQS-YARNLPDFHVLPIYGGMSYDTQLRQLKRGVQVVVG 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHIR K L + +KA+VLDEADEML +GF DD+E+IL+ +P R++ +FSAT+ Sbjct: 134 TPGRVMDHIRRKTLKLDGIKALVLDEADEMLRMGFIDDVEWILEQTPPTRQIALFSATMP 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +A + + V I ++ I + V+ + +A+ IL + I+F Sbjct: 194 AVIRQVANRHLNNPKEVKIVTKTSTAMTITQKYWPVSGLHKLDALTRILEMNEHDGMIIF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+A+ + L AL+G++SQ R + ++ G+ + +ATDV ARG+D+ Sbjct: 254 VRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVATDVVARGLDV 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSV 367 + V++ ++ + E+ +HR GRTGRAGR G ++ + M + ER R+ S+ Sbjct: 314 ERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQAIERATRQPIESM 373 Query: 368 VWEPAPSVEAIRERDAQRILQDPL-------FLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 A + A R ++ + D + FL+ +Q +K+ + DP K+AA Sbjct: 374 TLPTASDINAHRVNRFKQSITDAMDNEDLDFFLELVQSYQKE------NEVDPLKMAAAL 427 >gi|121605306|ref|YP_982635.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120594275|gb|ABM37714.1| DEAD/DEAH box helicase domain protein [Polaromonas naphthalenivorans CJ2] Length = 417 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/341 (37%), Positives = 192/341 (56%), Gaps = 10/341 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ A++E+GY+ T++Q A + L+ +D++ SAQTGSGKT AF L L L Sbjct: 15 VLLRAIAEKGYLAPTAIQAAAIPAILQGRDIVGSAQTGSGKTAAFALPLLHQLAQ----- 69 Query: 70 SPASAPL---ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124 +PA A L + PTRELA QVG + L Y V VAV GGVS++ + +L+ G Sbjct: 70 APADAKRRIRGLVLVPTRELAAQVGEAIVSLANYLPQRVKVAVVFGGVSINPQMMNLRGG 129 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A I+V TPGRL D I L + + +VLDEAD +LDLGF +++ IL P +R+ L Sbjct: 130 ADIIVATPGRLIDLIDHNALKLDQVGMLVLDEADRLLDLGFGEELGRILALLPAQRQSLF 189 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT PAI LA D +R+ + + + +I RA+ V S R + ++ + Sbjct: 190 FSATFPPAIEALAAGMLTDPLRIEVEAVKQAEPEIVQRAIEVDPSRRTQLLRHLAQTEKW 249 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF +T+ + L + + GELSQ +R+ LQ + +V +ATDVA Sbjct: 250 SRVLVFVATKHAAEIVADKLRKADIEAEPFHGELSQGKRNQVLQDFKAKLLQVVVATDVA 309 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ L +V++ +L + + +HR GRTGRAG G+++ Sbjct: 310 ARGIDIAQLPVVVNYDLPRSSVDYIHRIGRTGRAGETGIAI 350 >gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str. F0314] gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str. F0314] Length = 443 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 184/342 (53%), Gaps = 5/342 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+ GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ K+ + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKNPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+P + VI+ +L E+ +HR GRTGRAGR G+++ Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347 >gi|221131953|ref|XP_002164829.1| PREDICTED: similar to LOC556764 protein [Hydra magnipapillata] Length = 674 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 129/374 (34%), Positives = 206/374 (55%), Gaps = 20/374 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP +G+AL + + T++Q + L ++++ AQTGSGKT++F L A + Sbjct: 113 IPDYVGDALRKFNFKEPTAIQSQGFSVALSGRNMVGIAQTGSGKTISFVLP-AVIHINNQ 171 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 + P+ L + PTRELA+QV + + + T V + CI GG S + RDL+ G+ Sbjct: 172 PPLNQGDGPICLVLCPTRELAIQV-QSVAGQFGLTTRVRSTCIYGGASKGPQIRDLERGS 230 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL D I + +++ + +VLDEAD MLD+GF I I+D R++LM+ Sbjct: 231 EIVVATPGRLIDLIEIRKISLKRVTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQVLMW 290 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNIL 239 SAT + LA+++ D +++NI S SDI ++ + D +D +V +L Sbjct: 291 SATWPKEVRKLAEDFLTDYIQINIGS-----SDIHANHNILQIVDVCEEYEKDRKLVKLL 345 Query: 240 -RYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 G K I+FC T+ T+ L + + + + G+ SQ ER L+ R G+A Sbjct: 346 EEIMGEKENKTIIFCETKRKTDDITRRLRKDGWPAMCIHGDKSQPEREWVLKEFRSGKAP 405 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRR 355 + IATDVA+RG+D+PD+ V++ + ++ E+ +HR GRT RAG G + F N + Sbjct: 406 ILIATDVASRGLDIPDINFVVNYDYPNSGEDYIHRIGRTARAGNTGTAYTFFTSANGKYA 465 Query: 356 AE--RLFREANVSV 367 AE ++ EAN ++ Sbjct: 466 AELLKVMEEANQTI 479 >gi|91792246|ref|YP_561897.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91714248|gb|ABE54174.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 433 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 191/351 (54%), Gaps = 2/351 (0%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A++E GY N+T VQ+ + R +DVL SAQTG+GKT AF L + + Sbjct: 6 FSFAPEIL-RAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQKM- 63 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E S AL + PTRELA QV + + V GG+ + + + L+ Sbjct: 64 HERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQKLKQ 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA I+V TPGRL +HI L++S+++ +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + ++ +N + + V + + ++ Sbjct: 184 LFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELIGTKN 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF +TRA + L + GE +Q R AL+ +G+ RV +AT+V Sbjct: 244 WQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLVATEV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 AARG+D+ LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 304 AARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354 >gi|300692445|ref|YP_003753440.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07] gi|299079505|emb|CBJ52183.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07] Length = 549 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 195/373 (52%), Gaps = 11/373 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T +Q + L+ D+L AQTG+GKT F L L L A S Sbjct: 15 AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAVQPNKVHTS 74 Query: 74 APL-----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + AL + PTRELA QV + + V GGV ++ + L+ G IV Sbjct: 75 HGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N ++ R V + + ++R + + Sbjct: 195 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L +A+ G SQ R+ AL + G RV +ATD+AARGI Sbjct: 255 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL RE Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374 Query: 365 VSVV--WEPAPSV 375 +V+ +EP P++ Sbjct: 375 RTVLPGFEPDPTI 387 >gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus] Length = 694 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 134/402 (33%), Positives = 215/402 (53%), Gaps = 23/402 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-A 64 +I + L RG L +Q R KD++ A+TG GKT+AF + + LL A Sbjct: 153 DISETTKGHLRNRGITTLFPIQAQTFEHIRRGKDLIGRARTGMGKTLAFAVPVIEKLLMA 212 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQN 123 P P L +APTRELA QV + E L A + + CI G + +R + D L+ Sbjct: 213 GAGSLKPGRKPRVLVMAPTRELAKQVAADFE-LTAPS--LKTTCIYGGAPYRPQEDALRW 269 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179 G +VVGTPGRL DH+ L +S + ++LDEAD+MLD+GF++++E + ++ ++ Sbjct: 270 GVDVVVGTPGRLLDHVGRGTLQLSDAEFIILDEADQMLDMGFKEEMEKVFEACGEEGEQG 329 Query: 180 RRMLMFSATISPAITTLAKNYQK-DAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236 R+ML+FSAT+ P + + K Y K D V +++ E + D+++ + + R + I Sbjct: 330 RQMLLFSATMPPWVDKVVKEYMKEDRVFIDLVKEGTVKASKDVEHIGIPCHWTSRSSTIN 389 Query: 237 NILRYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 +I+ +GA K IVFC+T+ + + + + AL G+++Q R + L + G Sbjct: 390 DIVSVYGAGGNKRTIVFCTTKRDCNELC-MDPKMTYDCQALHGDITQANRESTLAGFKKG 448 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSS------NPENLLHRSGRTGRAGRKGMSVFV 347 +V +ATDVAARG+D+ ++LV++AE + + E+ +HRSGRTGRAGRKGM + + Sbjct: 449 SFKVLVATDVAARGLDMI-VDLVLNAEPPTHQSGRVDTESYVHRSGRTGRAGRKGMCITL 507 Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389 + + R W AP + I A + D Sbjct: 508 YTPRQRGGLGEIERHIGNDFAWRGAPQPDDIVNASAGAAIDD 549 >gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972] gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972] Length = 540 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 186/339 (54%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L+ KDV+ +AQTG+GKT F L + L R Sbjct: 12 ILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILERLTG-GPRVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ AL + PTRELA QV +E + Y++ + AV GGV ++ + L+ GA ++V Sbjct: 71 -ANQVRALILTPTRELAAQV-QECVFTYSRHLPLSSAVVFGGVKINPQMLRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI IL+ PK R+ L+FSAT Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK D V ++++ N ++ + + +V +++ + +V Sbjct: 189 SDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPADVKKKAPMLVKLIKDGNWQQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ L E + A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL + E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLV 347 >gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546] gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546] Length = 419 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 179/339 (52%), Gaps = 1/339 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L G+ T VQ + L KDVL AQTG+GKT AFGL + L+ + + S Sbjct: 17 TLESLGFKQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPILQKLIDSDTKRDIQS 76 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA QV L A+T + V GG S++ + R+L G I++ TP Sbjct: 77 NDVRALVLVPTRELAQQVFDNLTQYAAQTKIKVVAVYGGTSMNVQTRNLDQGCDILIATP 136 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K +N+ + +VLDEAD MLD+GF DI+ IL R+ L FSAT Sbjct: 137 GRLIDHMYCKNINLHKTEYLVLDEADRMLDMGFMPDIKRILQRCNDDRQTLFFSATFDKR 196 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I T+A ++ V V ++ N + V + + ++ + +VF Sbjct: 197 IKTIAYRMLEEPVEVQVSPSNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVLVFTK 256 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ K L + +++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 257 TKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVRALIATDVAARGLDIQQ 316 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 LE V++ ++ E+ +HR GRTGRAG++G +V ++ ++ Sbjct: 317 LEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRD 355 >gi|2500516|sp|Q40470|IF4A7_TOBAC RecName: Full=Eukaryotic initiation factor 4A-7; Short=eIF-4A-7; AltName: Full=ATP-dependent RNA helicase eIF4A-7 gi|485949|emb|CAA55738.1| unnamed protein product [Nicotiana tabacum] Length = 413 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 193/355 (54%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D +S AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YSLVECQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ+G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L H+K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + ++ I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV + PA Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQRFYNVVIEELPA 407 >gi|237815476|ref|ZP_04594474.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A] gi|237790313|gb|EEP64523.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A] Length = 545 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 120 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 178 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 179 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 238 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 239 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 298 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 299 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 358 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 359 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 418 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 419 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 478 Query: 371 PAP 373 PAP Sbjct: 479 PAP 481 >gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis WY96-3418] Length = 441 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 186/339 (54%), Gaps = 2/339 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL + Sbjct: 11 LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G I++ Sbjct: 69 AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L VLDEAD MLD+GF +D++ I + PKK + LMFSAT Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + V+ N I + + S++ NA++++++ +V Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AARGID Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L VI+ +LS+ E+ +HR GRTGRAG++G+++ ++ Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLV 347 >gi|326316425|ref|YP_004234097.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373261|gb|ADX45530.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 461 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 132/340 (38%), Positives = 188/340 (55%), Gaps = 8/340 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSPASA-P 75 G+ T +Q + L +DVL AQTGSGKT AFGL L LL A+ P P Sbjct: 36 GFDTPTPIQVQAIPAVLDGRDVLGRAQTGSGKTAAFGLPLLQRLLPQAQQAGARPGPRRP 95 Query: 76 LALAIAPTRELAVQVG---RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QVG REL + +A+ GGVS++ + L+ GA VV TP Sbjct: 96 RALVLVPTRELAAQVGEVLRELAGHLPGPRLKIAIAFGGVSINPQLMALRGGADAVVATP 155 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + L++S ++A+VLDEAD++LDLGF ++++ +L P +R+ L+FSAT P Sbjct: 156 GRLLDLVEHNALSLSQVQALVLDEADQLLDLGFAEELQRVLALLPAQRQNLLFSATFEPG 215 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVFC 251 + LA+ +D +R+ IA DI RA+ V R + +L + G +VF Sbjct: 216 VARLAEGLLRDPLRIEIAEAPGTAPDIAQRAIAVEGPRRTQLLKQLLTQEPGWTRVLVFV 275 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + + L + G LSQ R LQ RD R +V + TD+AARGID+ Sbjct: 276 ATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRDERWQVLVTTDLAARGIDIA 335 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 L V++ +L + +HR GRTGRAG G++V FV P+ Sbjct: 336 GLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTPE 375 >gi|224418675|ref|ZP_03656681.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter canadensis MIT 98-5491] gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT 98-5491] gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491] gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT 98-5491] gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491] Length = 505 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 113/333 (33%), Positives = 179/333 (53%), Gaps = 7/333 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + + E G+ + +Q+ ++ L DV+ AQTG+GKT AF L L + L + Sbjct: 22 KGIDEAGFKEPSPIQKEVIPVILDGLDVIAQAQTGTGKTAAFALPLINELRHD------- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + L +APTREL +Q+G E+ L V GG + R+ L+ IV+ TP Sbjct: 75 GSIEVLIVAPTRELVMQIGDEVFKLGKYNKVRTVSLFGGQPIRRQIELLEKKPQIVIATP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R L + VVLDE+DEMLD+GF DDIE I R+ L+FSAT+ Sbjct: 135 GRLLDHLRNGRLKDFDPRVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTLLFSATMPTP 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ + + + + + DI R ++ +R++AIV ++ AI+F Sbjct: 195 IKHLAQKILHNPKLIKVTPSDTTNQDISQRYYIINEQEREDAIVRLIDSEMPSKAIIFTR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + + L ++ AL G++ Q+ER +++ +D V +ATD+AARG+D+ Sbjct: 255 MKKEADLLCERLVNRGYKAGALHGDMEQRERQKSIKAFKDSSINVLVATDIAARGLDISG 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + V + + NPE+ +HR GRTGRAG+KG+++ Sbjct: 315 VSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAI 347 >gi|315501146|ref|YP_004080033.1| dead/deah box helicase domain protein [Micromonospora sp. L5] gi|315407765|gb|ADU05882.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5] Length = 629 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 129/351 (36%), Positives = 190/351 (54%), Gaps = 7/351 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + E L+ +G +Q A L L +DVL QTGSGKT+AFGL + + L A+ Sbjct: 26 GLPRQVVEVLARQGITTPFEIQRATLPDSLAGRDVLGRGQTGSGKTLAFGLPVIARL-AD 84 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R P P AL + PTRELA+QV L L GV + +GGV R+ L+ G Sbjct: 85 RNRARPLH-PRALVLVPTRELAMQVNDALMPLGKAVGVFLKTAVGGVPYDRQIDALRRGV 143 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL D I + ++ VLDEAD+M D+GF ++ +L +P + L+F Sbjct: 144 EIVVATPGRLGDLIERGVCRLDDVEITVLDEADQMADMGFLPEVTQLLAKTPADAQRLLF 203 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + TL K + D V + A S +D+ +L+ D+ +I G Sbjct: 204 SATLDNDVDTLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDKFAVAASIAAREG-- 261 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ V R + LA + L G +Q+ R+ L R+GR V +ATDVAA Sbjct: 262 RTMLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRTPVLVATDVAA 321 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRR 355 RGI + + LV+H + +P++ LHR+GRT RAG G ++ V+P+ QRR Sbjct: 322 RGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGESGAVATLVLPK--QRR 370 >gi|194205947|ref|XP_001917975.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Equus caballus] Length = 785 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 213/399 (53%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTRELA QV R+ + K + VA GG + + Sbjct: 250 LQRELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITKK--LAVACFYGGTPYGGQIERM 307 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DH++ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 308 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 367 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHS--DIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ + R Sbjct: 368 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAMTVEHLAIKCHWTQRAA 427 Query: 234 AIVNILR-YHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ ++ L +L G++ Q++R L+ R Sbjct: 428 VIGDVIRVYSGYQRRTIIFCETKKEAQELSQSVSIKL-DAQSLHGDIPQKQREITLKGFR 486 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 487 NGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHK 546 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 547 EEHQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 585 >gi|149189294|ref|ZP_01867580.1| DNA and RNA helicase [Vibrio shilonii AK1] gi|148836853|gb|EDL53804.1| DNA and RNA helicase [Vibrio shilonii AK1] Length = 477 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 117/336 (34%), Positives = 182/336 (54%), Gaps = 4/336 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY + +QE + + KDV+ +AQTG+GKT F L L L + + + Sbjct: 15 AIQDLGYEKASPIQEQAIPAIIEGKDVMAAAQTGTGKTAGFALPLLERL--NSGQRVKGN 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV E + Y+ + + C+ GGV ++ + L+ G ++V TP Sbjct: 73 HIRALILTPTRELAAQV-HESVFKYSTNLPLTSQCVFGGVKINPQMLKLRKGCDVMVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + S L+ +VLDEAD MLD+GF DI+ ILD PK R+ L+FSAT S Sbjct: 132 GRLLDLYQQNAIKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQNLLFSATFSNE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK + + V++ N ++ + + + ++ K +VFC Sbjct: 192 IRDLAKGLVNNPIEVSVTPPNSTTKLVEQSLYVTDKKQKPAMLAKLIDDGSWKQVLVFCK 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L +A+ G SQ R+ AL+ + G+ RV +ATD+AARG+D+P Sbjct: 252 TKHGANRLARFLEGKKITALAIHGNKSQGARTKALEHFKTGQIRVLVATDIAARGLDIPQ 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L E+ +HR GRTGRAG G + ++ Sbjct: 312 LPQVVNFDLPHVSEDYVHRIGRTGRAGETGKAYSLV 347 >gi|24374367|ref|NP_718410.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1] gi|24348927|gb|AAN55854.1|AE015722_4 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis MR-1] Length = 449 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 195/351 (55%), Gaps = 15/351 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAS 60 ++ Q + ++L G T++QE L L KD++ S++TGSGKT+AF L +++ Sbjct: 7 SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L++ D P L + PTRELA QV +L L A T +GG + + + + Sbjct: 67 RALSKRD-------PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L H +V TPGR+ DH+ K L ++ L+ ++LDEAD MLDLGF ++ I +++ KR Sbjct: 120 LAKEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKR 179 Query: 181 RM-LMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237 R LMFSAT+ + I +A K+ + V I + + +H DI R L D A+++ Sbjct: 180 RQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSR 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L K I+F +TRA R L+ F ALSGEL Q R+ + G+ ++ Sbjct: 240 LLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + TDVA+RG+DL ++ LVI+ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|261755014|ref|ZP_05998723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] gi|261744767|gb|EEY32693.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] Length = 517 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 198/375 (52%), Gaps = 9/375 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I V+ + + G +Q + L +D+L AQTGSGKT AF L + ++ Sbjct: 108 ITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLG 167 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 D+ P +A AL +APTRELAVQ+ + + + + A+ +GGVS + + + G Sbjct: 168 DKRRPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGID 226 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL D +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FS Sbjct: 227 VLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFS 286 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I +LA+ +D VRV +A + S+I V ++ + +L ++ Sbjct: 287 ATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRS 346 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + L + V A+ G SQ R AL RDG R+ +ATD+AAR Sbjct: 347 VIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAAR 406 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE 362 GID+P + V++ +L PE +HR GRTGR G G S+ + ++ R ER+ R Sbjct: 407 GIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRS 466 Query: 363 ----ANVSVVWEPAP 373 + V PAP Sbjct: 467 KLSIKDAPVKLAPAP 481 >gi|189426565|ref|YP_001953742.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ] gi|189422824|gb|ACD97222.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ] Length = 436 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 181/346 (52%), Gaps = 2/346 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ A++ GY + T +Q + D+L AQTG+GKT AF L + +LAE Sbjct: 15 PELLS-AITSLGYTSPTPIQAEAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ-MLAETT 72 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + PTRELA QV E+ + + + GGV++ + L G I Sbjct: 73 PAEKRRKPRALVLVPTRELAAQVSDEMNRYARRLSLRSTMIYGGVTIQAQIERLHRGVDI 132 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV TPGRL DH +++S +K +VLDEAD MLDLGF D+I+ + + P K + L+FSA Sbjct: 133 VVATPGRLLDHAERGTIDLSRIKFLVLDEADRMLDLGFIDEIKKVAEYLPAKHQALLFSA 192 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LA RV +A + V S + + ++R +G Sbjct: 193 TYSQNIKQLADQLLDQPKRVEVARRTLTAEAVTQAVYQVERSRKREMLSFLIRKNGWNQV 252 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF TR + T+ L + A+ SQ R+ L + G RV +ATDVAARG Sbjct: 253 LVFTRTRYGADKLTEELLFDGIKAAAIHSNKSQSIRTRTLAEFKQGAFRVLVATDVAARG 312 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 +D+ L V++ +L PE+ +HR GRTGRAG +G+++ ++ Q Q Sbjct: 313 LDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEEGIAISLVSQEEQ 358 >gi|110638219|ref|YP_678428.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC 33406] gi|110280900|gb|ABG59086.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC 33406] Length = 413 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 182/335 (54%), Gaps = 2/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++L+E G+ T +Q + P L +DVL AQTG+GKT AF + + +TL+ N + S Sbjct: 12 IKKSLAEAGFNRPTDIQFKSIPPILAGEDVLAIAQTGTGKTAAFVIPVLNTLI--NVKKS 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + L +APTRELAVQ+ + + A T + GGV + G I+V Sbjct: 70 EHTDISCLVMAPTRELAVQISEVFKKIGAYTRLRTVCITGGVEQEAQIAAADYGIDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ D I K + I+ +K +VLDEAD MLDLGF DI+ + P + + L FSATI+ Sbjct: 130 TPGRMFDLIYQKHIKITRVKILVLDEADHMLDLGFIKDIQDVKKFLPARHQTLFFSATIN 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + K+ +R+ IA ++R +I + + + D+ + +L+ H IVF Sbjct: 190 EEIKKLAYSLVKNPIRIQIAPKDRVSKNITHSVAFIGMDDKRFFLERLLKEHPESKVIVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ R + + V + G QQ R A+ ++G V IATD++ARGID+ Sbjct: 250 VRTQVRADRVQAAMERVGLKSVTMHGGKEQQARDAAMDAFKNGTVHVLIATDISARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +E V++ ++ EN +HR GRTGR KG ++ Sbjct: 310 AGVEYVVNYDMPEVAENYVHRVGRTGRGVSKGFAI 344 >gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276] gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276] Length = 484 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 190/338 (56%), Gaps = 7/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A + G+ + +Q + L KD++ AQTGSGKT AF L + TL F Sbjct: 52 ACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPF---- 107 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA Q+ +++ L + GV AV +GG+ + + L H++V TPG Sbjct: 108 --FALVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHVIVATPG 165 Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 RL DH+ KG ++ LK +V+DEAD +LDL F I+ +L PK+R +FSAT++ Sbjct: 166 RLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKERNTYLFSATMTTK 225 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L + VRV ++S+ S + +L+ L ++D+ ++ + + + I+F Sbjct: 226 VAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDSYLLYLANELSSSSMIIFTR 285 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T A R + +L F + L G+++Q R +L + G + +ATDVA+RG+D+P Sbjct: 286 TVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPL 345 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ++LVI+ ++ +N ++ +HR GRT RAGR G S+ ++ Q Sbjct: 346 VDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQ 383 >gi|304310488|ref|YP_003810086.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1] gi|301796221|emb|CBL44429.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1] Length = 527 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 187/335 (55%), Gaps = 16/335 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY T VQ+ + L+ D+L S+ TGSGKT AF L ++ +D + A L Sbjct: 20 GYEQATPVQQLAIPAALQGGDLLASSHTGSGKTAAFLLPCLQRMI--DDPKPKSGAARML 77 Query: 79 AIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + PTRELA+Q+ GRE+ L A +GG S + +DL I++ T Sbjct: 78 VLTPTRELALQIEKAARNYGREVRRLN------TACLVGGSSYFMQLKDLGRQPEILIAT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI +++S ++ +VLDEAD MLD+GF DDIE I+ + +R+ ++FSAT+ Sbjct: 132 PGRLLDHIERGRVDLSQIETLVLDEADRMLDMGFSDDIEAIVAETNPERQTMLFSATMEG 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250 + LA+ +D R+ I + Q + I+ + ++ L+ ++ + +LR A+VF Sbjct: 192 VVGALARKLTRDPQRIEIEKKPEQQAKIEQKLMMADDLAHKNRLLGALLRDESLNQAVVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +T+ + + L + F V AL G++ Q+ R+ L +R GR + +ATDVAARGID+ Sbjct: 252 TATKRAAEDLSNTLRDEGFSVEALHGDMHQKLRNRTLTKLRQGRIGILVATDVAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ + E+ +HR GRTGRAGR G +V Sbjct: 312 VGISHVINYDPPRQVEDYVHRIGRTGRAGRTGTAV 346 >gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Thermobifida fusca YX] gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Thermobifida fusca YX] Length = 503 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 181/342 (52%), Gaps = 9/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL G V +Q L L D++ A+TG+GKT AFGL L + + Sbjct: 29 IADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTFAFGLPLLQRVHTQ----- 83 Query: 71 PASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P SA P AL + PTRELA+QV +L + V +A GG + + L+ G IV Sbjct: 84 PGSAKRPRALVVVPTRELAIQVAADLATASKRIDVRIATVYGGRAYEPQISALRKGVDIV 143 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL D ++ + L +S + A+VLDEAD+MLDLGF DIE IL +P +R+ ++FSAT Sbjct: 144 VGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPDIERILAKTPDQRQTMLFSAT 203 Query: 189 ISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 + I L++ Y + + + + + D+ + +L+ Sbjct: 204 MPSEIVALSRKYLRRPTHIRAEDDPLDTGSGQVTQHVFRTHPLDKLEMLARLLQARNRGL 263 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VFC T+ + L F A+ G+L Q +R AL+ R+G+ V +ATDVAAR Sbjct: 264 TMVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDVLVATDVAAR 323 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ D+ V++ E + + HR GRTGRAGR G +V I Sbjct: 324 GIDVDDVTHVVNYECPDDEKTYTHRIGRTGRAGRSGTAVTFI 365 >gi|298489929|ref|YP_003720106.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae' 0708] gi|298231847|gb|ADI62983.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708] Length = 513 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 122/353 (34%), Positives = 185/353 (52%), Gaps = 8/353 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L + + T++Q + L +DV+ +QTG+GKT AF L + L Sbjct: 16 EILEKLSFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPMLEKLDVSK------ 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A A+ + PTRELA+QV + G+ V GG S+ R+ L+ G H+VVGTP Sbjct: 70 KAVQAVVLTPTRELAMQVHDAISQFMGNDGLRVLAIYGGQSIDRQMMQLKRGVHVVVGTP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + L + +K VLDEADEML +GF DD+ IL +P +R+ +FSAT+ P+ Sbjct: 130 GRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIRILSQAPTERQTALFSATMPPS 189 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251 I L + V V + + I+ A L+ + A+ IL + A++F Sbjct: 190 IRQLVNKFLNSPVTVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEMEDPETALIFV 249 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR + + T L V G+LSQQ R L R+ + R +ATD+AARG+D+ Sbjct: 250 RTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAARGLDVD 309 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 L VI+ +L + E +HR GRTGRAG++G ++ ++ Q +RR ++ F N Sbjct: 310 LLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLV-QPFERRKQQAFERHN 361 >gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium sp. 4-46] gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46] Length = 499 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 188/358 (52%), Gaps = 8/358 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRF 69 I +AL+E GYV T +Q + + +D+ AQTG+GKT AF L + L +E R Sbjct: 13 ILKALAETGYVTPTPIQAQAVPQAMAGRDLCGIAQTGTGKTAAFALPILHRLASETPQRR 72 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 +P L ++PTRELA Q+ V GGV++ R+ R L NG I+V Sbjct: 73 APRRGCRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQERALANGVDILV 132 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D I + L++ ++ +VLDEAD+MLDLGF ++ I+ PK R+ L FSAT+ Sbjct: 133 ATPGRLLDLIDRRSLSLDAVEYLVLDEADQMLDLGFIHALKRIVTLLPKARQSLFFSATM 192 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I TLA Y +D V+V + ++ R V V + + ILR +V Sbjct: 193 PRNIATLAAQYLRDPVQVAVTPVATTAERVEQRVVHVPTGAKQALLATILRDASIDRVLV 252 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ R + L + A+ G SQ +R AL R G RV +ATD+AARGID Sbjct: 253 FTRTKHGADRVVRGLEKAGIGSAAIHGNKSQPQRERALAAFRAGICRVLVATDIAARGID 312 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFRE 362 + + V++ +L + PE +HR GRT RAG G+++ N + RA ERL R+ Sbjct: 313 VEGVSHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFC--NDEERAYLRDIERLTRQ 368 >gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] Length = 506 Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 180/337 (53%), Gaps = 1/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + AL E GYV T +Q + P + +D+ AQTG+GKT AF L + L EN R Sbjct: 11 QPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRLSLENRR 70 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 +P L ++PTRELA Q+ V GGV+++R+ R + G I+ Sbjct: 71 -APRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNINRQERAIAPGVDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + + L + ++ +VLDEAD+MLDLGF ++ I+ P +R+ L FSAT Sbjct: 130 VATPGRLIDLVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQSLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA Y + V+V + +D + + + + ++LR + + Sbjct: 190 MPKNIAGLADQYLTNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVL 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R + L + A+ G SQ +R AL RDG RV +ATD+AARGI Sbjct: 250 VFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGI 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ + V++ +L + PE+ +HR GRT RAG +GM++ Sbjct: 310 DVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGMAI 346 >gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] Length = 479 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/389 (31%), Positives = 202/389 (51%), Gaps = 27/389 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EA+ G+ + +Q+ + L KD++ A+TGSGKT AF + + +LL R Sbjct: 39 ICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLHNPQRL- 97 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL +APTRELA Q+G + E L A G+ A +GG+ + +++ L H+V+ Sbjct: 98 -----YALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIA 152 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ KG ++ +K +VLDEAD ML + F ++I I+ P R +FSAT+ Sbjct: 153 TPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPADRNTYLFSATM 212 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + + L + KD V+V I + + + + +D + +L ++ ++ Sbjct: 213 TSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLI 272 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F ST + T +L FQ + L G++ Q R AL + V + TDVA+RG+D Sbjct: 273 FASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLD 332 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF------ 360 +P +++VI+ ++ ++ ++ +HR GRT RAGR G+++ + Q + +R E L Sbjct: 333 IPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDA 392 Query: 361 ---REANVSVVWEPAPSVEAIRERDAQRI 386 E V V+ E R +AQRI Sbjct: 393 YSCEEETVLVITE--------RVNEAQRI 413 >gi|254704340|ref|ZP_05166168.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 3 str. 686] gi|260566411|ref|ZP_05836881.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40] gi|260155929|gb|EEW91009.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40] Length = 503 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|306843924|ref|ZP_07476519.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1] gi|306275679|gb|EFM57403.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1] Length = 455 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 26 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 84 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 85 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 144 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 145 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 204 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 205 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 264 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 265 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 324 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 325 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 384 Query: 371 PAP 373 PAP Sbjct: 385 PAP 387 >gi|261218608|ref|ZP_05932889.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] gi|261321895|ref|ZP_05961092.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] gi|260923697|gb|EEX90265.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] gi|261294585|gb|EEX98081.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] Length = 462 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 33 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 92 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 272 TVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 331 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391 Query: 371 PAP 373 PAP Sbjct: 392 PAP 394 >gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218] Length = 536 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 185/337 (54%), Gaps = 4/337 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E+GY + +Q + L+ KDV+ +AQTG+GKT F L + L R A Sbjct: 14 QAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILERLTG-GPRVR-A 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + AL + PTRELA QV +E + Y++ + AV GGV ++ + L+ GA ++V T Sbjct: 72 NQVRALILTPTRELAAQV-QECVFTYSRHLPLSSAVVFGGVKINPQMLRLRKGADVLVAT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + L+ +VLDEAD MLD+GF DI IL+ PK R+ L+FSAT S Sbjct: 131 PGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQNLLFSATFSD 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LAK D V ++++ N ++ + + +V +++ + +VF Sbjct: 191 EIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPADVKKKAPMLVKLIKDGNWQQVLVFT 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ ++ L E + A+ G SQ R+ AL + G RV +ATD+AARGID+P Sbjct: 251 RTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVATDIAARGIDIP 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL + E+ +HR GRTGRAG G ++ ++ Sbjct: 311 QLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLV 347 >gi|212633620|ref|YP_002310145.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3] gi|212555104|gb|ACJ27558.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3] Length = 458 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 126/330 (38%), Positives = 187/330 (56%), Gaps = 9/330 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ G+ ++T +Q L L +DV+ A+TGSGKT AFGL L L + R Sbjct: 16 LTTMGFESMTPIQAQSLPAILNGEDVIGQAKTGSGKTAAFGLGLLHKLDVKRFRIQ---- 71 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +L + PTRELA QV +E+ L + V GGV + + L++GAHI+VGTPG Sbjct: 72 --SLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPG 129 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L++ + +VLDEAD MLD+GF+ ++E I++ P +R+ L+FSAT I Sbjct: 130 RIIDHLDRGRLHLDDVHTLVLDEADRMLDMGFQVELEAIVEQVPVERQTLLFSATFPEQI 189 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVFCS 252 ++A + V V +AS + S ID V +DR A+ +L H ++A+VFC+ Sbjct: 190 KSIADSIMFKPVLVKVAS-THETSTIDQHFYEVGNNNDRMRALKLLLLQHRPESAVVFCN 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L F VVAL G+L Q++R L + + +ATDVAARG+D+ Sbjct: 249 TKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDA 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKG 342 L+ VI+ ++ + E +HR GRTGRAG KG Sbjct: 309 LDAVINYHIAFDTEVHIHRIGRTGRAGSKG 338 >gi|62289973|ref|YP_221766.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str. 9-941] gi|82699901|ref|YP_414475.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308] gi|189024215|ref|YP_001934983.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus S19] gi|254689280|ref|ZP_05152534.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 6 str. 870] gi|254693764|ref|ZP_05155592.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 3 str. Tulya] gi|254697417|ref|ZP_05159245.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730315|ref|ZP_05188893.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 4 str. 292] gi|256257530|ref|ZP_05463066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella abortus bv. 9 str. C68] gi|297248372|ref|ZP_06932090.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196] gi|62196105|gb|AAX74405.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus bv. 1 str. 9-941] gi|82616002|emb|CAJ11028.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189019787|gb|ACD72509.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus S19] gi|297175541|gb|EFH34888.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196] Length = 531 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|126176118|ref|YP_001052267.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS155] gi|217975023|ref|YP_002359774.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS223] gi|304412472|ref|ZP_07394078.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307307131|ref|ZP_07586869.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|189040039|sp|A3D9I5|RHLB_SHEB5 RecName: Full=ATP-dependent RNA helicase rhlB gi|254797691|sp|B8E670|RHLB_SHEB2 RecName: Full=ATP-dependent RNA helicase rhlB gi|125999323|gb|ABN63398.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] gi|217500158|gb|ACK48351.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] gi|304349114|gb|EFM13526.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306910370|gb|EFN40801.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 438 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 13/343 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +AL+E G+ T +Q L L+ KD+ AQTG+GKT+AF +A + LL+ + Sbjct: 20 VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS-----T 74 Query: 71 PA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 P + P A+ +APTRELA+Q+ ++ L T + V + GG S +R+ L G Sbjct: 75 PVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKVLDQG 134 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182 I++GT GR+ D++R + ++ ++AVVLDEAD M DLGF DI F+ P+ +R Sbjct: 135 VDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLN 194 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT+S + LA ++ + V+V IA E + +I + ++ ++ ++ Sbjct: 195 MLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEED 254 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + AIVF +T+ S L +V L+G++ Q++R L+ G+ + +ATD Sbjct: 255 WPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATD 314 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+ + D+ V + +L + E+ +HR GRTGRAG KGMS+ Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSI 357 >gi|265994970|ref|ZP_06107527.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262766083|gb|EEZ11872.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 455 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 26 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 84 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 85 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 144 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 145 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 204 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 205 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 264 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 265 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 324 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 325 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 384 Query: 371 PAP 373 PAP Sbjct: 385 PAP 387 >gi|88859340|ref|ZP_01133980.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2] gi|88818357|gb|EAR28172.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2] Length = 413 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 187/351 (53%), Gaps = 5/351 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E+GY T +Q + LR +DV+ A TG+GKT F L + LL+ P Sbjct: 14 KAVTEQGYTQPTPIQVEAIPVVLRLRDVMAVANTGTGKTAGFTLPMVQ-LLSGGAIAQPK 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S AL I PTRELA QV + ++ T + AV GGV + + L G ++V TP Sbjct: 73 SV-RALVITPTRELAAQVAQNVQDYSRHTNISSAVVFGGVRIEPQIAQLATGVDVLVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + +N + L+ +VLDEAD MLDLGF DDI I P +R+ LMFSAT S Sbjct: 132 GRLVDLYNQQAINFNQLELLVLDEADRMLDLGFIDDIRHIQTLLPSERQTLMFSATFSDE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +LAK + + ++ N + + V + + A++ +L+ H + +VF Sbjct: 192 IKSLAKGMLNNPQLIEVSPVNSTVDTVKQKIYPVDKTRKSEALIYLLKKHQWRQVLVFSR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L ++ +Q R++AL + G +V +ATD+A+RGID+ Sbjct: 252 TKQGADSLVTQLNNAGINSASIHANRTQHARTHALNGFKSGEIKVLVATDIASRGIDVNQ 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNMQRRA-ERLF 360 L VI+ +L E+ +HR GRTGRAG G+ S+F I ++ Q +A ERL Sbjct: 312 LPCVINLDLPYVAEDYVHRIGRTGRAGTAGLAISLFSIDESNQLQAIERLL 362 >gi|325068259|ref|ZP_08126932.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20] Length = 507 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 182/345 (52%), Gaps = 7/345 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69 I EAL +G + +Q L L +D++ A+TG+GKT+ FG+ L L + Sbjct: 81 ICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGW 140 Query: 70 --SPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 PAS +P AL I PTRELA QV EL AK V + GG + + DL+ GA Sbjct: 141 DEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIEDLERGAE 200 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D + L+++H+ VVLDEADEMLDLGF D+E IL + R ++FS Sbjct: 201 VVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTRADRHTMLFS 260 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHG 243 AT+ A+ LA+ Y + + + +V + N + IL+ G Sbjct: 261 ATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEVVSRILQAEG 320 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ + +R L F AL G+L Q R AL+ R+ + V +ATDV Sbjct: 321 RGRTIIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRNNKVDVLVATDV 380 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ D+ VI+ + + + +HR GRTGRAG G +V + Sbjct: 381 AARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFV 425 >gi|302308420|ref|NP_985329.2| AFL221Cp [Ashbya gossypii ATCC 10895] gi|299790624|gb|AAS53153.2| AFL221Cp [Ashbya gossypii ATCC 10895] Length = 557 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 133/393 (33%), Positives = 205/393 (52%), Gaps = 23/393 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P+ + + + E G+ T++Q L +D++ A TGSGKT+++ L + A+ Sbjct: 121 FPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQP 180 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 SP P+ L +APTRELAVQ+ +E + ++ + C+ GGV ++ RDLQ G Sbjct: 181 -LLSPGDGPVVLVLAPTRELAVQIQKECS-KFGRSSRIRNTCVYGGVPKSQQIRDLQRGV 238 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D + N+ + +VLDEAD MLD+GF I I+D R+ LM+ Sbjct: 239 EILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 298 Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 SAT + LA++Y D ++VNI S H+ V+ RD + ++ Sbjct: 299 SATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVKHLEIASK 358 Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 K++ I+F ST+ + T L + + +A+ G+ QQER L R GR+ + +AT Sbjct: 359 DKDSKIIIFASTKRTCDEITSYLRQDGWPALAIHGDKQQQERDWVLNEFRTGRSPIMVAT 418 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGID+ + VI+ ++ N E+ +HR GRTGRAG G ++ F Sbjct: 419 DVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAI------------SFFT 466 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394 EAN ++ A + +RE Q I QD L D Sbjct: 467 EANKTL---GAQLISIMREA-KQEIPQDLLVYD 495 >gi|261325143|ref|ZP_05964340.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|261752356|ref|ZP_05996065.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] gi|261301123|gb|EEY04620.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|261742109|gb|EEY30035.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] Length = 462 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 33 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 92 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 331 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391 Query: 371 PAP 373 PAP Sbjct: 392 PAP 394 >gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis] Length = 727 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 211/382 (55%), Gaps = 28/382 (7%) Query: 31 LNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--APLALAIAPTRELAV 88 +P +DV+ A+TG+GKT +F + L L + D +PA AP L + PTRELA+ Sbjct: 185 FDPVYDGEDVIAQARTGTGKTFSFAIPLVEKL--QGDSAAPARGRAPKVLVLTPTRELAI 242 Query: 89 QVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS 147 QV ++ + + K +V C GG S + ++NG I+VGTPGR+ DH++ L++S Sbjct: 243 QVAKDFKDIIKKLSIV---CFYGGTSYMPQIEAIRNGIDILVGTPGRIKDHLQNHKLDLS 299 Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----RMLMFSATISPAITTLAKNYQK 202 LK VVLDE D+MLD+GF + +E IL S KK + L+FSAT P + +AK Y + Sbjct: 300 KLKHVVLDEVDQMLDMGFAEQVEEILALSYKKDADTNPQTLLFSATCPPWVYDVAKKYMR 359 Query: 203 DAVR-VNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKN-AIVFCSTRASV 257 + + V++ + Q + +++ A+ S R I +++R Y G+ AIVFC T+ Sbjct: 360 PSCKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIRVYSGSHGRAIVFCETKKEA 419 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + A +L G++ Q++R L+ R G V +AT+VAARG+D+P+++LV+ Sbjct: 420 NELA-LNASIKQNAQSLHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVDLVV 478 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 + E+ +HRSGRTGRAGR G+ + + + + + +A ++ P+ Sbjct: 479 QCSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEDQLRYVENKAGITFRRVGVPTAND 538 Query: 378 I---RERDAQRILQDPLFLDSI 396 I +DA R FLDSI Sbjct: 539 IIKSSSKDAVR------FLDSI 554 >gi|33594923|ref|NP_882566.1| putative ATP-dependent RNA helicase [Bordetella parapertussis 12822] gi|33564999|emb|CAE39946.1| putative ATP-dependent RNA helicase [Bordetella parapertussis] Length = 582 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 209/361 (57%), Gaps = 19/361 (5%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE++ P ++ ALSE G+ TSVQ A + + D++VS+QTGSGKT AF L + Sbjct: 39 FEDLGLAPTIL-SALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALN 97 Query: 61 TLLAENDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115 + + P + + L + PTRELA+QV + Y + G+ A +GG+ Sbjct: 98 RIAHQ-----PGNKGVGVQVLVLTPTRELALQVA-DATASYGRNLPGLRTATVVGGMPYG 151 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + + L ++V TPGRL DH++ + ++ + +VLDEAD MLD+GF +DIE I++ Sbjct: 152 AQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIER 211 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233 PK+R+ L+FSAT+ ++ LA+ ++ R+ IA ++H++I +++L A + + Sbjct: 212 LPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANI-TQSLLYADDAAHKMR 270 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + ++LR AIVF +T+ LA+ F AL G+++Q++R+ L ++ G Sbjct: 271 LLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRG 330 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + RV +ATDVAARGID+ + ++ +L E+ +HR GRTGRAGR G + F + + + Sbjct: 331 QLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQA-FTLATHAE 389 Query: 354 R 354 R Sbjct: 390 R 390 >gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia vietnamiensis G4] gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis G4] Length = 486 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 132/378 (34%), Positives = 202/378 (53%), Gaps = 9/378 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + L + Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRGA 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGVS++ + L+ G IVV T Sbjct: 74 KRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT S Sbjct: 134 PGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + + +A N + + V + + +++R H +VF Sbjct: 194 EIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID+ Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDID 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE V Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEV 373 Query: 368 V--WEPAPSV--EAIRER 381 + +EP P+V E I++R Sbjct: 374 IAGFEPDPNVKPEPIQQR 391 >gi|313674605|ref|YP_004052601.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM 4126] gi|312941303|gb|ADR20493.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM 4126] Length = 371 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 116/364 (31%), Positives = 203/364 (55%), Gaps = 11/364 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 + LSE N T +QE ++ ++ D++ AQTG+GKT AFGL + + ++D+ Sbjct: 14 KGLSELNIQNPTKIQELVIGHLMQNTGDLVAQAQTGTGKTAAFGLPILERINPKDDKIQ- 72 Query: 72 ASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ ++PTRELA Q+ +L ++ V + V GG + ++ ++L+ I+V Sbjct: 73 -----AVILSPTRELAQQIKHQLFKFTKYSDKVFMEVVFGGEKIEKQIQNLKRPTQILVA 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D IR K ++I K +VLDEADEML +GF+ D+EFIL++ K+ + +FSATI Sbjct: 128 TPGRLNDLIRRKAVDIRDAKLMVLDEADEMLSMGFKKDLEFILNTMKHKKDIWLFSATIP 187 Query: 191 PAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I + K Y + +A ++ + + I ++ V ++ + L+ + I+ Sbjct: 188 TDIKYIIKQYLEPNAKQIKASGNELVNEKIMHQYVPCDTDEKMMVLDYFLKTQKKERGII 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ S + L L G++ Q++R ++ ++ + + IATDVAARGID Sbjct: 248 FCNTKNSARALHEQLNARKISTGILEGDMHQKDRDKEMRAFKNKKLDLLIATDVAARGID 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + +L V+H E+ + +HRSGRT RAG+ G+S+ + +N + +++ +E + + Sbjct: 308 VANLAFVVHYEIPKQVDYYVHRSGRTARAGKTGISMALCTKNEVTQIKKIQQELGIKI-- 365 Query: 370 EPAP 373 +P P Sbjct: 366 KPVP 369 >gi|260945072|ref|XP_002616834.1| hypothetical protein CLUG_04075 [Clavispora lusitaniae ATCC 42720] gi|238850483|gb|EEQ39947.1| hypothetical protein CLUG_04075 [Clavispora lusitaniae ATCC 42720] Length = 559 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 197/373 (52%), Gaps = 34/373 (9%) Query: 6 NIPQVIGEALSER-GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64 +P I E ++++ Y T VQ A + LR +DV+ A+TGSGKT+AF L L + + + Sbjct: 151 QLPTSIVEVITQKLKYTEPTPVQRAAIPVALRHRDVVGIAETGSGKTLAFLLPLITYIQS 210 Query: 65 --------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 E+ + A+ L L +APTRELA+Q+ +E E + G+ V IGG Sbjct: 211 IEPEYMKYEHSKEDNANRALGLVLAPTRELALQITKEAEKVAGPLGLSVVTIIGGHQYEE 270 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 L+NG HIVV TPGRL D + +++ + +DEAD+M+D+GF ++ ILD Sbjct: 271 TVHSLRNGVHIVVATPGRLVDSLERGIVSLEKCYHLTMDEADKMIDMGFEKSLQAILDYL 330 Query: 177 P----------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 P KR LMF+ATI+PAI + K Y D + + N +I Sbjct: 331 PSSESLQKSIDSRIFRVSKRTTLMFTATITPAIEKITKQYLIDPAFLYVGGANEVVENIS 390 Query: 221 YRAVLV---ALSDRDN----AIVNILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLF-QV 271 + + + D D ++V IL+ G + I+F + + +V + + L F +V Sbjct: 391 QQFEYMGEETVQDFDEKRFASLVRILKAQGHDMSVIIFANFKRTVEQLAEELEGKGFPKV 450 Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331 + G +Q+ R A++ R RA + IATDVAARG+D+P + LV++ +S E +HR Sbjct: 451 AVVHGSKTQEAREKAIESFRAKRANILIATDVAARGLDVPHVSLVVNYHMSKKFEEYIHR 510 Query: 332 SGRTGRAGRKGMS 344 GRTGRAG+KG S Sbjct: 511 IGRTGRAGQKGAS 523 >gi|119775819|ref|YP_928559.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B] gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis SB2B] Length = 533 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL +GY + +Q + L +D+L +AQTG+GKT F L L LL++ + Sbjct: 12 ILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLLE-LLSQTQKAG 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA Q+ + + V GGV + + L+ G I+V Sbjct: 71 PKQV-RALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTLRRGIDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ L+ +VLDEAD MLD+GF DI+ IL P KR+ L+FSAT S Sbjct: 130 TPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I TLA +A V++ N + V V + + + + R++ + +VF Sbjct: 190 PEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAELTRFYRWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ +R + + + A+ G SQ R+ AL + G R+ IATD+AARGID+ Sbjct: 250 CRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLIATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +L V++ EL PE+ +HR GRTGRAG G + ++ Sbjct: 310 SELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLV 347 >gi|327400905|ref|YP_004341744.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316413|gb|AEA47029.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus SNP6] Length = 389 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 119/316 (37%), Positives = 181/316 (57%), Gaps = 21/316 (6%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 DV+ ++TGSGKT+AF + + AE AL + PTRELA Q+ E Sbjct: 42 DVVAQSETGSGKTLAFAIPIIEA--AET-----GKGIQALVLTPTRELANQIENEFRRFS 94 Query: 99 AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 G+ +A GGV + + RDL+ A +VVGTPGRL DH+R K ++ S ++ V+DEAD Sbjct: 95 RHKGLRIANIHGGVPIEPQIRDLRR-ADVVVGTPGRLLDHVRRKTVDFSRVEYFVIDEAD 153 Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD--AVR----VNIASE 212 MLD+GF DD++ I+ +PK R+ L+FSATI P + LA Y K+ +R V+ Sbjct: 154 RMLDMGFIDDVKAIMRCTPKTRQSLLFSATIPPEVRALASRYMKNPKTIRTKELVDPKLL 213 Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272 N+ + D+D S++ + +V++LR K A+VF + R + K L H F+ Sbjct: 214 NQYYYDVDD-------SEKFSMLVHLLRKENPKKALVFTNMRKTSDIVAKNLFMHGFKAS 266 Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332 L G L+Q +R ++ R G RV +ATDVA+RG+D+ + V + ++ S E+ +HR Sbjct: 267 VLHGGLTQSKRDRMMERFRKGEIRVLVATDVASRGLDVKGVTHVFNYDVPSKAEDYIHRI 326 Query: 333 GRTGRAGRKGMSVFVI 348 GRT RAG+ G +V ++ Sbjct: 327 GRTARAGKNGKAVTIL 342 >gi|330838649|ref|YP_004413229.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC 35185] gi|329746413|gb|AEB99769.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC 35185] Length = 446 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 114/344 (33%), Positives = 195/344 (56%), Gaps = 8/344 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64 + P+V+ +AL+ +G T VQE + P +R +D +V AQTG+GKT+AF L L + Sbjct: 7 HCPEVLVDALARQGIREATLVQEQAI-PAVRSGRDAIVQAQTGTGKTLAFLLPLLERIKG 65 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 A AL ++PTRELA+Q R + L G+ A+ GG + R++ L+ Sbjct: 66 N------ARVAQALVVSPTRELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLRQK 119 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +++ TPGRL DH+R + +S + +VLDEADE++ LGF +D+E +L++ ++++ Sbjct: 120 PQLIIATPGRLLDHLRRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQLML 179 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I L + Y K+ + + E ++I+ V + + + +L + Sbjct: 180 FSATMPERIRALTRRYMKEPREITVQPECVTLANIEQVIVDTREDTKLDKLCELLNKYQP 239 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A+VFC T+ V+ T LA + V L G+L+Q +R+ ++ R+ + ++ + TD+A Sbjct: 240 YLAMVFCHTKQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILVVTDIA 299 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARG+D+ + V + +L + E +HR GRTGRAG KG++V + Sbjct: 300 ARGLDIEGVTHVFNYDLPQDTEWYIHRIGRTGRAGAKGLAVTFV 343 >gi|306838409|ref|ZP_07471254.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF 2653] gi|306406549|gb|EFM62783.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF 2653] Length = 455 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 26 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 84 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 85 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 144 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 145 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 204 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 205 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 264 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 265 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 324 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 325 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 384 Query: 371 PAP 373 PAP Sbjct: 385 PAP 387 >gi|99081650|ref|YP_613804.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040] gi|99037930|gb|ABF64542.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040] Length = 493 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 119/347 (34%), Positives = 188/347 (54%), Gaps = 13/347 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+ E GY + T +Q + L +DVL AQTG+GKT +F L + + L Sbjct: 11 PKVL-KAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMITRLARGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV + + A+ IGGVS + + G + Sbjct: 70 R---ARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240 T++P I + + RV IA + +I+ V+ S +D + ++ Sbjct: 187 TMAPEIERITNTFLSGPERVEIARQATTSENIEQAVVMFKASRKDREGSEKRRVLRELIN 246 Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 G +NAI+FC+ + V K L ++ + + G+L Q +R+ L RDG ++ Sbjct: 247 QEGEAVQNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGTLKIL 306 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +A+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGR G ++ Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAI 353 >gi|217977138|ref|YP_002361285.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2] gi|217502514|gb|ACK49923.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2] Length = 494 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 184/344 (53%), Gaps = 5/344 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY T +Q + L +DVL AQTG+GKT AF L + S L R A Sbjct: 14 QAVEASGYTTPTPIQAQAIPFALTGRDVLGIAQTGTGKTAAFTLPMLSRLEQGRAR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV V VA+ IGGVS + + GA +++ TP Sbjct: 71 RMPRTLILEPTRELAAQVEESFVRYGVNHKVNVALLIGGVSFADQEAKITRGADVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D L ++ ++ +V+DEAD MLD+GF DIE I P R+ L FSAT+ P Sbjct: 131 GRLLDFAERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA--KNAIVF 250 IT L + + + RV +A + + I + A + L A KNAI+F Sbjct: 191 ITRLTETFLHNPARVEVARASSTATTITQGLIASAPGPAKRETLRRLLRSAADFKNAIIF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ K L H F AL G+L Q+ R +L + G + + +DVAARG+D+ Sbjct: 251 CNRKRDVALLHKSLLTHGFNAGALHGDLDQRARMASLDAFKTGEVALIVCSDVAARGLDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 PD+ V++ ++ ++ E+ +HR GRTGRAG+ G+++ ++ + Q+ Sbjct: 311 PDVSHVLNFDVPTHAEDYVHRIGRTGRAGKSGVAITIVTKADQK 354 >gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] Length = 436 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 187/338 (55%), Gaps = 7/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 +L GY T +Q A + L+ D+L +AQTGSGKT AF L + L ++ + Sbjct: 15 SLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPIIERLAGMEEQ---KA 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L + PTRELAVQVG +E YA+ V V GGV + + G +VV Sbjct: 72 KPRFLVLVPTRELAVQVGAAIER-YAEGAPRKARVLVAFGGVGYDAQMKAAYAGVEVVVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + + ++ +VLDEAD +L LGF +++ IL+ P+ R+ L+FSAT Sbjct: 131 TPGRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGRQNLLFSATFP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +LA KD V++ + + +R I RA+ V + R + ++L G + +VF Sbjct: 191 QNVVSLANALLKDPVKIELEAASRPVESIAQRAIEVDGNSRTGLLRHLLETEGWERVLVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 ++ T L +H + VAL G +SQ +R+ +L+ + + RV +ATDVAARGID+ Sbjct: 251 VGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRVLMATDVAARGIDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + + +HR GRTGRAG G++V I Sbjct: 311 AGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFI 348 >gi|265991134|ref|ZP_06103691.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265999460|ref|ZP_05466486.2| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9] gi|263001918|gb|EEZ14493.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094098|gb|EEZ18020.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9] gi|326409073|gb|ADZ66138.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis M28] Length = 462 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 33 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 92 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 212 RLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 331 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391 Query: 371 PAP 373 PAP Sbjct: 392 PAP 394 >gi|319404441|emb|CBI78044.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498] Length = 415 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 118/347 (34%), Positives = 191/347 (55%), Gaps = 9/347 (2%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L+ D+L AQTGSGKT+AF L + + +L D+ P +A AL + PTRELA+Q+ + Sbjct: 42 LKGHDILGIAQTGSGKTLAFSLPILNRILTLGDKRYPKTAR-ALILVPTRELAIQIEEAI 100 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 + T + + +GG+S + R + G I++ TPGRL D IR K +++S + +L Sbjct: 101 SAVAKGTHLSTCLIVGGMSRLIQIRRMAKGVDILIATPGRLMDLIRSKYVDLSQSRFFIL 160 Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214 DEAD MLD+GF D+ I + +K + +FSAT+S + LA N + V++ + S+ Sbjct: 161 DEADRMLDMGFISDVRQIANFLHEKCQTALFSATMSKEVNVLADNLLRKPVKIEVVSQGT 220 Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274 ++I V+ S++ + + +L + IVF T+ + LA+ + V + Sbjct: 221 TAAEITQVLYCVSTSEKKSILSKLLTNPALTSVIVFIRTKHGADSVARSLAKTGYSVATI 280 Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334 G SQ R AL+ R+G RV +ATD+AARGID+P + VI+ +L N E+ +HR GR Sbjct: 281 HGNKSQNARQCALKNFREGLVRVLVATDIAARGIDIPGISHVINYDLPDNAESYVHRIGR 340 Query: 335 TGRAGRKGMSVFVIPQNMQR----RAERLFR----EANVSVVWEPAP 373 TGR G G ++ + + +++ ERL R + + + P P Sbjct: 341 TGRNGASGYAITLFDEKIEQVRLCAIERLIRMKLKRKEIPLQFAPLP 387 >gi|310814605|ref|YP_003962569.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare Y25] gi|308753340|gb|ADO41269.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare Y25] Length = 426 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 190/343 (55%), Gaps = 2/343 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +AL+E G T +Q + + +DVL AQTG+GKT AFGL + L+ ++ R + Sbjct: 12 LTKALAELGITEPTPIQAQAIPHAMNGRDVLGLAQTGTGKTAAFGLPMIDALI-KDSRRA 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL +APTRELA Q+ L + + V GG + + + ++ G I+V Sbjct: 71 QAKGARALVLAPTRELAKQIAENLAAYTKDSHLKTVVVTGGAGIGGQIQRMERGTAILVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + K +++S + +VLDEAD+MLDLGF + I P R+ ++FSAT+ Sbjct: 131 TPGRLIDLLDRKAIDLSQTEFLVLDEADQMLDLGFIHALRRIAPLLPANRQTMLFSATMP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + LA ++ + +RV + + + I VA + + ++ +L H + A+VF Sbjct: 191 KQMEELAASFLSNPIRVQVNPPGQAATKITQSVHFVASRAKTDLLIELLDAHRDELALVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + K L + V A+ G SQ +R AL+ R G RV +ATDVAARG+D+ Sbjct: 251 GRTKHGMEKLAKQLENAGYAVAAIHGNKSQGQRDRALRDFRAGTLRVLVATDVAARGLDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 PD+ V + EL + P+N +HR GRT RAG+ G +V F P M Sbjct: 311 PDVRYVYNYELPNVPDNYVHRIGRTARAGKDGQAVAFCAPDEM 353 >gi|153002454|ref|YP_001368135.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS185] gi|160877173|ref|YP_001556489.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS195] gi|189040040|sp|A6WTD3|RHLB_SHEB8 RecName: Full=ATP-dependent RNA helicase rhlB gi|189040041|sp|A9L5D5|RHLB_SHEB9 RecName: Full=ATP-dependent RNA helicase rhlB gi|151367072|gb|ABS10072.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|160862695|gb|ABX51229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|315269377|gb|ADT96230.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 438 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 13/343 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +AL+E G+ T +Q L L+ KD+ AQTG+GKT+AF +A + LL+ + Sbjct: 20 VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS-----T 74 Query: 71 PA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 P + P A+ +APTRELA+Q+ ++ L T + V + GG S +R+ L G Sbjct: 75 PVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKVLDQG 134 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182 I++GT GR+ D++R + ++ ++AVVLDEAD M DLGF DI F+ P+ +R Sbjct: 135 VDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLN 194 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT+S + LA ++ + V+V IA E + +I + ++ ++ ++ Sbjct: 195 MLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEED 254 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + AIVF +T+ S L +V L+G++ Q++R L+ G+ + +ATD Sbjct: 255 WPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATD 314 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+ + D+ V + +L + E+ +HR GRTGRAG KGMS+ Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSI 357 >gi|319760253|ref|YP_004124191.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str. BVAF] gi|318038967|gb|ADV33517.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str. BVAF] Length = 617 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 198/367 (53%), Gaps = 19/367 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + GY +QE + L+ D+L A TGSGKT AF L L ++ + AS Sbjct: 21 LKKVGYKKPLPIQEKCIPLLLKGHDILGIAHTGSGKTAAFLLPLLQSI-----NINTAST 75 Query: 75 PLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L I PTRELA+Q+G+ ++++ +G+ VA+ GG + + + DL+ HI+VGTPG Sbjct: 76 Q-GLIITPTRELAIQIGQVCIDFIKYISGISVAILYGGQNYNIQLNDLRKNPHIIVGTPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ NIS LK +++DEADEML +GF +D++ I++ P R+ FSAT I Sbjct: 135 RLLDHLNRGTANISKLKILIIDEADEMLRMGFIEDVKLIVNKVPVDRQTACFSATFPENI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNAIVFC 251 ++ + V I + + DI LV + + A++ L AIVF Sbjct: 195 KKISYKFMNTPKEVCICNIDIHPPDIKQNFWLVKRGMITKHEALIRFLEIEDYDAAIVFV 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T++ R +++L + AL+G+++Q R + ++ G + I+TDVAARG+D+ Sbjct: 255 RTKSETLRISEILENFGYNSAALNGDMNQSIRQKTVSRLKYGTLDILISTDVAARGLDIQ 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ------NMQRRAERLFREANV 365 + LVI+ ++ +N + +HR GRTGRAGR G S+ + + N +R E+ N+ Sbjct: 315 RISLVINYDVPNNYNSYIHRIGRTGRAGRIGKSLLFVERQEYNLLNSIKRGEKF----NI 370 Query: 366 SVVWEPA 372 S V P Sbjct: 371 SEVQCPT 377 >gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9] gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9] Length = 581 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 209/400 (52%), Gaps = 33/400 (8%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65 I Q + ++L + N T VQ + L+ KD++VSAQTGSGKT AF L LL E Sbjct: 11 IEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFMLPSIQQLLHEL 70 Query: 66 ----------------NDRFSPASAP----LALAIAPTRELAVQVGREL-EWLYAKTGVV 104 R S A+ P L + PTRELA+QV E++Y GV Sbjct: 71 ETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQVSDATKEFIYGFKGVH 130 Query: 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164 +A +GG++ + L IVV TPGRL DHI+ +N+ +LK ++LDEAD MLD+G Sbjct: 131 IATLVGGMAYGPQINSLSREVEIVVATPGRLLDHIKAGRVNLRNLKILILDEADRMLDMG 190 Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRA 223 F DI ++ +P R+ L+FSAT + LA++ D R+ ++ +H +I+ Y Sbjct: 191 FIHDINNVVAETPDDRQTLLFSATFEGNVVKLARDMLTDPERIIVSDHTDKHQNIEQYLF 250 Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283 + + + +L+ A+ IVF T+ + L + + L G+++Q +R Sbjct: 251 YADTVGHKFKLLEALLKDPEAEQVIVFTKTKRGATDLAGRLKDIDIKASELHGDMNQGQR 310 Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343 + +Q + G+ +V +ATDVAARGID+ + VI+ +L E+ +HR GRTGRAGR G Sbjct: 311 NRTIQGLHKGKIKVLVATDVAARGIDIQGISHVINYDLPMQAEDYVHRIGRTGRAGRDGR 370 Query: 344 SVFVIPQNMQRRAERLF-----REANVSVVWEPAPSVEAI 378 + + + +RR R RE +++V+ P +E + Sbjct: 371 A-YTLALLSERRGVRFIENYINREFDIAVI----PGLEPV 405 >gi|182416631|ref|ZP_02948044.1| cold-shock deAd box protein a [Clostridium butyricum 5521] gi|237668564|ref|ZP_04528548.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379523|gb|EDT77009.1| cold-shock deAd box protein a [Clostridium butyricum 5521] gi|237656912|gb|EEP54468.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 369 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 113/343 (32%), Positives = 188/343 (54%), Gaps = 13/343 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L++ G T +QE + KD++ A TG+GKT+AF LL ++ +P Sbjct: 14 DILNKNGISAPTPIQEESIEIIKNGKDIIAEAGTGTGKTLAF-------LLPIFEQINPK 66 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S + AL + PTRELA+Q+ E + L + V C GG + + + L ++V T Sbjct: 67 SKDVQALILTPTRELALQITNEADKLNEDKKINVLACYGGKDISSQLKKLNKNVQLIVAT 126 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI K +++ +K VLDEAD+ML +GF++++E I++ KK++ML FSAT+ Sbjct: 127 PGRLLDHIERKTIDLKTVKTFVLDEADQMLFMGFKNEVEKIMEQMSKKKQMLCFSATMDS 186 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGAKNAIV 249 + LA Y D +++ E I + +V +DR +A+ +L AI+ Sbjct: 187 EVKKLAYRYMNDPAIISVKKEEVDMHSI--KQFVVETTDRQKRDALCKVLDEDNPFMAII 244 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V+A + + +++Q +R ++ R+ + + IATDVAARG+D Sbjct: 245 FCRTKRRADDLETVMATRKYNCAKIHSDIAQNKRERIMKSFREAKLQYLIATDVAARGLD 304 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351 + + + + ++ PE+ +HR GRTGRAG G++ +FV P+N Sbjct: 305 ITGVTHIYNYDIPETPESYVHRIGRTGRAGESGITCMFVDPKN 347 >gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4] gi|74897154|sp|Q54TJ4|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName: Full=DEAD box protein 27 gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4] Length = 783 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 119/344 (34%), Positives = 191/344 (55%), Gaps = 8/344 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + G+ T +Q + L KD+L SA TGSGKT AF L + LL R S Sbjct: 203 KAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLF---RDSEY 259 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A L + PTRELA+Q +E L + + + +GG+S + +L+ +V+ TP Sbjct: 260 RAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATP 319 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ G+ + L+ ++LDEAD +LD+GF+D+I I++S P R+ ++FSAT++ Sbjct: 320 GRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSATLND 379 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNIL-RYHGAKNA 247 + TLAK + +RV + + + S ++ V + LSDR ++++ R Sbjct: 380 EVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGT 439 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC ++ V R + + L G LSQ++R ++LQ RDG+ +A+DVA+RG Sbjct: 440 IIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRG 499 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +D+ ++ VI+ + +N N +HR GRT RAG G S I N Sbjct: 500 LDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDN 543 >gi|262372452|ref|ZP_06065731.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205] gi|262312477|gb|EEY93562.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205] Length = 383 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 195/346 (56%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLTN 68 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121 + RF P AL +APTRELA+Q+ + + L T + + +GGV ++++ L Sbjct: 69 PVQEQRFR--GEPRALILAPTRELALQIESDAQHLTKFTDLHLVTLLGGVDFEKQKKMLD 126 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179 +N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP ++ Sbjct: 127 RNFVDIIVATPGRLIDFVEQKEVWLDKIEFLVIDEADRLLDMGFIPSVKRIVRFSPFKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +V D+ + IL Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVENKDKYKLLQEIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L ++V LSGE++Q +R L + G+ + I Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQGKNNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + VI+ L ++ +HR GRTGRAG +G+S+ Sbjct: 307 ATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSI 352 >gi|30249765|ref|NP_841835.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea ATCC 19718] gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea ATCC 19718] Length = 457 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 197/353 (55%), Gaps = 20/353 (5%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALA 59 FEN+ P ++ L+ GY T +Q+ + PDL DV+ SAQTG+GKT AF L Sbjct: 3 FENLNLHPAIVKAVLAA-GYTAPTPIQQQAI-PDLIAGHDVMASAQTGTGKTAAFMLPAL 60 Query: 60 STLLAENDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVS 113 L +PA P L + PTRELA+QV + Y K + V +GG+ Sbjct: 61 HRLA------TPAQIRGRGPRILVLTPTRELALQVS-DAASKYGKFLPRINVVSILGGMP 113 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + + L ++V TPGRL DHI ++ S L+ +VLDEAD MLD+GF D+E I Sbjct: 114 YPLQNKLLSQTVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIQDVERIA 173 Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232 S+P R+ L+FSAT+ AI +A K R+ +A+++ + I+ R V L+ ++ Sbjct: 174 LSTPATRQTLLFSATLDVAIEKIATRLLKAPKRIQVAAQHTKLDHIEQRMHYVDDLTHKN 233 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 + ++LR K AIVF +T+ L+ + A+ G+++Q+ER+ L +R Sbjct: 234 RLLDHLLRDTTIKQAIVFTATKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTLTGLRQ 293 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 GR ++ +ATDVAARGID+ D+ VI+ +L E+ +HR GRTGRAG G++V Sbjct: 294 GRLKILVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAV 346 >gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229] Length = 488 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 138/382 (36%), Positives = 199/382 (52%), Gaps = 16/382 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN S Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS------VFVIPQNMQRRAERLF-REA 363 L V++ +L + PE+ +HR GRTGR GR G + V V + + R ERL RE Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREI 372 Query: 364 NVSVV--WEPAPSV--EAIRER 381 V+ +EP P+ E I+ R Sbjct: 373 PQQVIPGFEPDPNAKPEPIQRR 394 >gi|153938593|ref|YP_001391335.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str. Langeland] gi|152934489|gb|ABS39987.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum F str. Langeland] gi|295319364|gb|ADF99741.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum F str. 230613] Length = 376 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 121/347 (34%), Positives = 189/347 (54%), Gaps = 13/347 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L ++ + T +QE + DV+ AQTG+GKT+AF LL + S Sbjct: 13 IIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAF-------LLPMFENIS 65 Query: 71 P-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P +A L I PTRELA+Q+ E L + + GG + + + L+N H+V+ Sbjct: 66 PDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIHLVI 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ LN LK +VLDEADEML +GF++D+ I++++P+KR+ L FSAT+ Sbjct: 126 ATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATM 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNA 247 + + LA +D + I E +I + VL+ +DR + IL A Sbjct: 186 NSEVKKLAYKNMRDPKLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMA 243 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V + L + + L G ++Q +R ++ ++ + IATDVAARG Sbjct: 244 IIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARG 303 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 +D+ + V + ++ N E+ +HR GRTGRAG KG + +FV P++ Q Sbjct: 304 LDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350 >gi|1170511|sp|P41382|IF410_TOBAC RecName: Full=Eukaryotic initiation factor 4A-10; Short=eIF-4A-10; AltName: Full=ATP-dependent RNA helicase eIF4A-10 gi|475213|emb|CAA55642.1| translation initiation factor (eIF-4A) [Nicotiana tabacum] gi|475216|emb|CAA55641.1| translation initiation factor (eIF-4A) [Nicotiana tabacum] Length = 413 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 193/355 (54%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D +S AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YSLVECQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ+G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L H+K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + ++ I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV + PA Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPA 407 >gi|168179718|ref|ZP_02614382.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum NCTC 2916] gi|182669435|gb|EDT81411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum NCTC 2916] Length = 376 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 121/347 (34%), Positives = 189/347 (54%), Gaps = 13/347 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L ++ + T +QE + DV+ AQTG+GKT+AF LL + S Sbjct: 13 IIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAF-------LLPMFENIS 65 Query: 71 P-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P +A L I PTRELA+Q+ E L + + GG + + + L+N H+V+ Sbjct: 66 PDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIHLVI 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ LN LK +VLDEADEML +GF++D+ I++++P+KR+ L FSAT+ Sbjct: 126 ATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATM 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNA 247 + + LA +D + I E +I + VL+ +DR + IL A Sbjct: 186 NSEVKKLAYKNMRDPKLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMA 243 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V + L + + L G ++Q +R ++ ++ + IATDVAARG Sbjct: 244 IIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARG 303 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 +D+ + V + ++ N E+ +HR GRTGRAG KG + +FV P++ Q Sbjct: 304 LDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350 >gi|315127484|ref|YP_004069487.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] gi|315015998|gb|ADT69336.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] Length = 415 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 191/342 (55%), Gaps = 6/342 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + Y T++Q + P L KDV+ SAQTG+GKT AF L L LL + P Sbjct: 18 AIEQNNYTTPTAIQHKTIPPILAGKDVMGSAQTGTGKTAAFVLPLLHKLLNTTKKDEPGI 77 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A + + + PTRELA QV E T + A+ GG S+ + + L+ A ++V TPG Sbjct: 78 ARVVI-LTPTRELAQQVFASFEKYAQGTDIKGALAYGGASIGPQIKALKT-AQVIVATPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHI + +S + ++V DEAD MLD+GF D+I IL P R+ L+FSAT ++ Sbjct: 136 RLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPGDRQTLLFSATFDDSV 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIV-NILRYHGAKNAIVFC 251 L+K KD + + + R + ++ V+ A+ DR +V +++ + ++F Sbjct: 196 FELSKKLLKDPELIEV--DKRNSAAVEVEQVIYAVDEDRKRELVSHMIGMKNWRQVLIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + K + + + ++ G+ SQ R AL ++G RV +ATDVAARG+D+P Sbjct: 254 RTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGSTRVLVATDVAARGLDIP 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 L+ VI+ EL E+ +HR GRTGRAG +G+++ ++ + Q Sbjct: 314 ALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQ 355 >gi|265984119|ref|ZP_06096854.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] gi|264662711|gb|EEZ32972.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] Length = 462 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 33 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 92 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 331 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391 Query: 371 PAP 373 PAP Sbjct: 392 PAP 394 >gi|254714133|ref|ZP_05175944.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M644/93/1] gi|254716809|ref|ZP_05178620.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti M13/05/1] Length = 535 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 345 TVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|303277715|ref|XP_003058151.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460808|gb|EEH58102.1| predicted protein [Micromonas pusilla CCMP1545] Length = 413 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 123/372 (33%), Positives = 194/372 (52%), Gaps = 13/372 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P + DV+ AQ+G+GKT F + L E Sbjct: 46 NLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCAGVLQQLDYE 105 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL +APTRELA Q+ + + L V C+GG SV ++R LQ+G Sbjct: 106 KEECQ------ALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQSGV 159 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ D +R + L H+K LDEADEML GF+D I I P K ++ +F Sbjct: 160 HVVVGTPGRVYDMLRRRALKPDHIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVGVF 219 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ P + + + VR+ + + I V V D + + + ++ Sbjct: 220 SATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAI 279 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +++F +TR V T + F V A G++ Q R ++ R G +RV I TD+ Sbjct: 280 TQSVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ + LVI+ +L + PEN LHR GR+GR GRKG+++ + ++ ERL ++ Sbjct: 340 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKD----DERLLQDVQ 395 Query: 365 --VSVVWEPAPS 374 V+E PS Sbjct: 396 RFYQTVFEELPS 407 >gi|157804046|ref|YP_001492595.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel] gi|157785309|gb|ABV73810.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel] Length = 410 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L + Sbjct: 1 MKNF-NLSEELIIALETMNITEPTEIQKQSIPIAMIGSDILASSQTGSGKTLAYLLPVID 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 60 SFIK--------NKTTALILVPTRELATQIYSTLNKVTRYYKINSAVLIGGEPMPKQFMQ 111 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P+KR Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + LMFSAT+ I TL++ Y + VR+ + + N+ ++I ++ +A ++ + + L Sbjct: 172 QFLMFSATMPKHIITLSQKYLNNPVRITVGANNKAAAEIKQESIHIADKEKFSELTKQLD 231 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + I+F TR S + +L + A+ G+LSQ++R + R R+ +A Sbjct: 232 NREG-SVIIFVKTRRSADQLANMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P+++ R Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPEDVIR 345 >gi|302864863|ref|YP_003833500.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302567722|gb|ADL43924.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca ATCC 27029] Length = 635 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 129/351 (36%), Positives = 190/351 (54%), Gaps = 7/351 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + E L+ +G +Q A L L +DVL QTGSGKT+AFGL + + L A+ Sbjct: 26 GLPRQVVEVLARQGITTPFEIQRATLPDSLAGRDVLGRGQTGSGKTLAFGLPVIARL-AD 84 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R P P AL + PTRELA+QV L L GV + +GGV R+ L+ G Sbjct: 85 RNRARPLH-PRALVLVPTRELAMQVNDALMPLGKAVGVFLKTAVGGVPYDRQIDALRRGV 143 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL D I + ++ VLDEAD+M D+GF ++ +L +P + L+F Sbjct: 144 EIVVATPGRLGDLIERGVCRLDDVEITVLDEADQMADMGFLPEVTQLLAKTPADAQRLLF 203 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + TL K + D V + A S +D+ +L+ D+ +I G Sbjct: 204 SATLDNDVDTLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDKFAVAASIAAREG-- 261 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ V R + LA + L G +Q+ R+ L R+GR V +ATDVAA Sbjct: 262 RTMLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRTPVLVATDVAA 321 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRR 355 RGI + + LV+H + +P++ LHR+GRT RAG G ++ V+P+ QRR Sbjct: 322 RGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGESGAVATLVLPK--QRR 370 >gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae] gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae] Length = 655 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 205/370 (55%), Gaps = 25/370 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L R V L VQ + + DV+ A+TG+GKT+AF + L L + A Sbjct: 105 LKARNVVKLFPVQYSTFDFVYDGWDVITQARTGTGKTLAFSIPLVERLQKDGVSIKRGRA 164 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPG 133 P+ + +APTRELA+QV + + + K + + C+ G + + + D N G I+VGTPG Sbjct: 165 PVVIVLAPTRELAIQVYEDFKSISTK---LTSFCVYGGTPYPPQNDAINRGLDILVGTPG 221 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR------RMLMFSA 187 R+ DH+R LN+S L+ VVLDE D ML++G + ++ IL+++ KK + L FSA Sbjct: 222 RIQDHVRSGRLNLSELRHVVLDEVDRMLEMGMVEQVDEILEAAYKKDDKSQNPQTLFFSA 281 Query: 188 TISPAITTLAKNYQK-DAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 T+ + A+ Y K + V++ +NR + +++ A+ R I +I+ + Sbjct: 282 TLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEHLAIRCGWQARAPVIADIITMYSG 341 Query: 245 KN--AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ A+VFC T+ ++ VL L Q L G++ Q +R L+ RDG +V +AT Sbjct: 342 QHGRAMVFCETKKEANQL--VLEGVLKQEAQVLHGDIPQAQRELTLKSFRDGNIQVLVAT 399 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-------MQR 354 DVAARG+D+P+++LV+ E S+ ++ +HRSGRTGRAGR G+ V N ++R Sbjct: 400 DVAARGLDIPEVDLVVQCEPPSDVDSYIHRSGRTGRAGRTGVCVCFYKPNREQDLRFVER 459 Query: 355 RAERLFREAN 364 RA FR+ N Sbjct: 460 RAGIKFRQIN 469 >gi|42524815|ref|NP_970195.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] gi|39577025|emb|CAE78254.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] Length = 549 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 115/369 (31%), Positives = 201/369 (54%), Gaps = 23/369 (6%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + A+ + Y + T +QE + P L KDV AQTG+GKT AF + + Sbjct: 1 MKFSELNLDSQLLSAIQKLNYDDCTPIQEQAIPPVLDGKDVAGLAQTGTGKTAAFVIPVM 60 Query: 60 STLL---------AENDR----------FSPASAPLALAIAPTRELAVQVGRELEWLYAK 100 +L E + + P + L + PTRELA QV + L Sbjct: 61 ERILRARPIQGEVTEEQKALIEKRAYKDWKPQN--FVLILVPTRELAEQVQDNINKLSVD 118 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 +G+ GG +++ L+NG +V TPGRL D + +++ ++A+V DEAD M Sbjct: 119 SGLRGFAIYGGTGYDKQKEALKNGVEFIVATPGRLIDLYKEHLVDLKQVRAIVFDEADRM 178 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 D+GF+DD+++IL P++R++L+FSAT++ + + + V +NI+ + + ++ Sbjct: 179 FDMGFKDDMKYILQRVPRERQLLVFSATLNFDVLNTIYQFGSEPVEINISRDQAKADNVK 238 Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280 + V ++ ++++L+ H K AI+F + + SV R K L E+ +A+S L+Q Sbjct: 239 DQIFHVGSDEKPQHLLSLLKVHNPKQAIIFTNFKMSVERIAKFLVENGVPAMAISSLLTQ 298 Query: 281 QERSNALQMMR-DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 +R+ ++ + + V +ATDVAARG+D+ +++V++ EL + E+ +HR GRTGRAG Sbjct: 299 AQRNRVIEQFKAENDMNVLVATDVAARGLDIKGVDMVVNYELPMDSESYVHRIGRTGRAG 358 Query: 340 RKGMSVFVI 348 G + ++ Sbjct: 359 TTGQAFSLV 367 >gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3] gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3] Length = 509 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 128/374 (34%), Positives = 200/374 (53%), Gaps = 8/374 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E+GYV T +Q+ + L+ +D++ SAQTG+GKT F L L L+ +N+ + Sbjct: 70 ILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLI-QNEPHA 128 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P+ AL + PTRELA QVG + + V GGVS++ + L+ G I+V Sbjct: 129 KGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILV 188 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D +++ ++ +VLDEAD MLD+GF DI +L P +R+ L+FSAT Sbjct: 189 ATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATF 248 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA+ + + V +A N I V + + + ++ + +V Sbjct: 249 SDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLV 308 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D Sbjct: 309 FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLD 368 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVS 366 + +L V++ EL + PE+ +HR GRTGRA G + V V + R ERL ++ Sbjct: 369 IEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPR 428 Query: 367 VV---WEPAPSVEA 377 + +EP PS++A Sbjct: 429 IAIAGYEPDPSIKA 442 >gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5] gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5] Length = 552 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 126/346 (36%), Positives = 196/346 (56%), Gaps = 18/346 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I AL GY N T +Q + L +D+L+SAQTGSGKT AF + + Sbjct: 45 IAKPILTALDRSGYTNPTPIQAQAIPFALAGRDLLLSAQTGSGKTAAFVIPVL------- 97 Query: 67 DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRD 120 DR S A++ AL + PTRELA QV + Y+K G+ +GG + + Sbjct: 98 DRLSRATSFDKLTKALILTPTRELAQQVHDSVR-TYSKDMRGLFCVPLVGGAPYNGQITA 156 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G ++V TPGRL DHI +++S L+ +VLDEAD MLD+GF DDI IL ++P R Sbjct: 157 LKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPTDR 216 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-IL 239 + +M SAT + +A ++ K+ RV+I E+ + I+ + D N +++ I+ Sbjct: 217 QTIMCSATWDGPVGKIAASFTKNPERVSIKVES---AHIEEKVYYCDDFDHKNRLLDKIV 273 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + I+F +T+ S + K L E + L G+L Q +R+ +Q +R+G+ ++ + Sbjct: 274 CQQDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVKILV 333 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARG+D+P + VI+ +L E+ +HR GR GRAGR G+++ Sbjct: 334 ATDVAARGLDIPAISHVINYDLPRQTEDYVHRIGRCGRAGRTGIAI 379 >gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102] gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102] Length = 486 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 189/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY + T +QE + L +DV+ A+TGSGKT AF L + LL + Sbjct: 74 EATEALGYKHPTPIQEKSIPLALAGRDVIGLAETGSGKTAAFALPVLQALLEK------P 127 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S A+ +APTRELA Q+ + E L + + AV +GG+ + ++ L H+VV TP Sbjct: 128 SGLFAVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPHVVVATP 187 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ + KG ++ LK +VLDEAD +LD+ F I+ IL P++R +FSAT+S Sbjct: 188 GRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYLFSATMSS 247 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + KD RV++ S Q S + + + + +D V+++ + IVF Sbjct: 248 KVESLQRASLKDPARVSVQSNGYQVVSTLLQNFLFIPHALKDVYCVHLINSFIGQTTIVF 307 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R G + +ATDVAARG+D+ Sbjct: 308 LRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVATDVAARGLDI 367 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P++++VI+ +L + + +HR GRT RAG+ G ++ ++ Q Sbjct: 368 PNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQ 407 >gi|254476796|ref|ZP_05090182.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11] gi|214031039|gb|EEB71874.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11] Length = 447 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 2/347 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + + E G+ T +Q + L KDVL AQTG+GKT AFG+ L + ++ + Sbjct: 9 LPEKLLSRIDEMGFKEPTPIQARAIPHALNGKDVLGLAQTGTGKTAAFGVPLIAQMM-QY 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A L +APTRELA Q+ L+ L T + + +GGVS++ + L G Sbjct: 68 GRKPAAKTVRGLVLAPTRELANQIAATLKGLTEGTPLKTGLVVGGVSINPQISRLSRGTD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL D + L++ +VLDEAD+MLDLGF + I P++R+ ++FS Sbjct: 128 ILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPQERQTMLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + +A +Y VR+ ++ + I +A +++ + + +L H + Sbjct: 188 ATMPKQMNEIANSYLNAPVRIEVSPPGKAADKITQSVHFIAKAEKLSLLKELLAEHKDER 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ + + K L+ F A+ G SQ +R AL + G ++ +ATDVAAR Sbjct: 248 TLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALAAFKSGEVKILVATDVAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 G+D+PD++ V + EL + P+ +HR GRT RAG+ G +V F P M Sbjct: 308 GLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEM 354 >gi|83719171|ref|YP_441164.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] gi|257140174|ref|ZP_05588436.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] gi|83652996|gb|ABC37059.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264] Length = 482 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 198/372 (53%), Gaps = 11/372 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--G 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE + Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREISQE 372 Query: 367 VV--WEPAPSVE 376 V+ +EP P+ + Sbjct: 373 VIPGFEPDPNAK 384 >gi|296273966|ref|YP_003656597.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296098140|gb|ADG94090.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM 7299] Length = 480 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 204/372 (54%), Gaps = 9/372 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ ++GY+ + +QE + L + DVL AQTG+GKT F L L +L++ + + Sbjct: 14 KAIKDKGYIKPSPIQEQAIPIILEKHDVLAGAQTGTGKTAGFTLPLLQ-ILSKKESNNTK 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV + ++ + AV GGV ++ ++ ++ G IV+ TP Sbjct: 73 PEIRALILTPTRELAAQVAQSVDDYGKYLPLKTAVIFGGVGINPQKALIRKGVDIVIATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI K ++ISH++ +LDEAD MLD+GF DI +L P R+ L+FSAT S Sbjct: 133 GRLLDHIEQKTIDISHVEHFILDEADRMLDMGFIRDIRKVLALLPSHRQNLLFSATFSDE 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFC 251 I L+ + +A N S++ + + + DR +++ L G + +VF Sbjct: 193 IKKLSDGILNKPKLIEVARRN-TSSEMVSQVIHLVDKDRKKTLLSKLIKEGDWRQVLVFT 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ ++ ++ L A+ G SQ R+ AL + G RV +ATD+AARGID+ Sbjct: 252 RTKHGANKLSQQLEIDGITATAIHGNKSQGARTKALADFKAGAVRVLVATDIAARGIDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV 368 L V++ EL + E+ +HR GRTGRAG +G +V ++ + + E+L + + V+ Sbjct: 312 QLPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHDYLKGIEKLIKTSIKKVL 371 Query: 369 ---WEPAPSVEA 377 +E PS++A Sbjct: 372 IEGFEVDPSIKA 383 >gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera] Length = 688 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 190/357 (53%), Gaps = 20/357 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65 P+++ +A+ GY + +Q A + L+++DV+ A+TGSGKT AF L + + + L Sbjct: 219 PELL-KAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPP 277 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G Sbjct: 278 ISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC 337 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------ 179 +V+ TPGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 338 EVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN 397 Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 R MFSAT+ PA+ LA+ Y ++ V V I + + I ++V Sbjct: 398 EDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKG 457 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 S++ + +L G K AIVF +T+ S K L + ++V L G SQ++R +L+ Sbjct: 458 SEKMPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKSQEQREISLE 517 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R R V +ATDVA RGID+PD+ VI+ ++ N E HR GRTGRAG+ G++ Sbjct: 518 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 574 >gi|256369477|ref|YP_003106985.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti CCM 4915] gi|255999637|gb|ACU48036.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti CCM 4915] Length = 535 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|148560232|ref|YP_001258986.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840] gi|161619002|ref|YP_001592889.1| DEAD/DEAH box helicase domain-containing protein [Brucella canis ATCC 23365] gi|254701799|ref|ZP_05163627.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv. 5 str. 513] gi|256061140|ref|ZP_05451294.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae 5K33] gi|148371489|gb|ABQ61468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis ATCC 25840] gi|161335813|gb|ABX62118.1| DEAD/DEAH box helicase domain protein [Brucella canis ATCC 23365] Length = 535 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|326538779|gb|ADZ86994.1| DEAD/DEAH box helicase domain protein [Brucella melitensis M5-90] Length = 455 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 26 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 84 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 85 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 144 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 145 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 204 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 205 RLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 264 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 265 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 324 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 325 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 384 Query: 371 PAP 373 PAP Sbjct: 385 PAP 387 >gi|168186565|ref|ZP_02621200.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str. Eklund] gi|169295454|gb|EDS77587.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str. Eklund] Length = 371 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 121/381 (31%), Positives = 204/381 (53%), Gaps = 15/381 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 MK F+N I + I + LS G + T +QE + + KDV+ AQTG+GKT+AF L + Sbjct: 1 MKDFKNLGISKNIIDVLSREGIKSPTPIQENSIEFIRKGKDVIAEAQTGTGKTLAFLLPI 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + E++ L + PTRELA+Q+ E L + + GG + + Sbjct: 61 FENISLESNFVQ------VLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQL 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ +++ TPGRL DH+ + + LK +VLDEAD+ML +GF++++E I++ + K Sbjct: 115 KKLKGNIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIINYTSK 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIV 236 K + L FSAT++ + LA Y KD V++ +E +I + +V +DR +++ Sbjct: 175 KYQTLCFSATMNSEVKKLAYRYMKDPKVVSVKTEEITLKNI--KQFVVETTDRRKQDSLC 232 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +L AI+FC T+ V + L + + L G+L+Q +R ++ ++ + Sbjct: 233 KVLDEDNPFMAIIFCRTKRRVDNLEEALHKRGYNCSKLHGDLAQSKRERVMKKFKNMDTQ 292 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 IATDVAARG+D+ + V ++ N E+ +HR GRTGRAG +G + I +R Sbjct: 293 YLIATDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLL 352 Query: 357 ERLFREANVSVVWEPAPSVEA 377 E + +E ++ P +VE+ Sbjct: 353 ETIEKEIKFTI---PRRNVES 370 >gi|330957006|gb|EGH57266.1| helicase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 630 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 200/359 (55%), Gaps = 13/359 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + LYA+ V+ CI GGV + + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-LYARDLKFVSACIFGGVGTNPQVQAMARGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT LA + R+ + N I+ R + + + + + +++ + Sbjct: 192 ATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLLAHLITVGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++F T+ +R + L +H VA+ G SQ R+ AL + G R+ +ATD+AAR Sbjct: 252 VLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE 362 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ V P + + + ER+ R+ Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTRQ 370 >gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter cloacae SCF1] gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1] Length = 446 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 127/377 (33%), Positives = 200/377 (53%), Gaps = 9/377 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ +N+ Sbjct: 10 PEIL-RAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQRLV-QNE 67 Query: 68 RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P+ AL + PTRELA QVG + + V GGVS++ + L+ G Sbjct: 68 PHAKGRRPIRALILTPTRELAAQVGENVREYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL D L + ++ +VLDEAD MLD+GF DI +L P KR+ L+FS Sbjct: 128 ILVATPGRLLDLEHQNALKLDSVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LA+ ++ + + +A N + V + + ++ + Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGEGNWQQ 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AAR Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREA 363 G+D+ +L V++ EL + PE+ +HR GRTGRA G + V V + R ERL ++ Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367 Query: 364 NVSVV---WEPAPSVEA 377 + +EP PS++A Sbjct: 368 IPRIAIAGYEPDPSIKA 384 >gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1] gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1] Length = 460 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 120/358 (33%), Positives = 191/358 (53%), Gaps = 4/358 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + + +A + G +Q+ + P L D+L AQTGSGKT AF L + S ++ Sbjct: 33 ISETLLKAAAAAGMTEPKPIQKEAIPPFLAGSDILGVAQTGSGKTAAFSLPILSKIIGLG 92 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P +A AL + PTRELAVQ+ + + L V A+ +GGVS H + + + G Sbjct: 93 TKRRPRTA-RALILVPTRELAVQIEKVVRELAKGAHVSTALVLGGVSRHSQIKRMAQGVD 151 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL D +R + +S +VLDEAD MLD+GF +D+ I ++ R+ +FS Sbjct: 152 VLIATPGRLTDLVRDGAVVLSETTWLVLDEADRMLDMGFINDVRRIAKATHPARQTALFS 211 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I LA + K+ VR+ ++ + ++I ++ + + +L Sbjct: 212 ATMPREIEALASSLLKEPVRIEVSPQGTTAAEIRQSVIMARTKQKRKLLSEMLADEKMAQ 271 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ R TK L FQ + G SQ R AL R+G R+ +ATD+AAR Sbjct: 272 VIIFSRTKHGADRVTKDLQHDGFQAAVIHGNKSQNARQRALNDFREGAVRILVATDIAAR 331 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ--RRAERLFR 361 GID+P + V++ +L E+ +HR GRTGR G +G ++ + P + R+ ER+ R Sbjct: 332 GIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGAEGEAITLCDPGEVSKLRQVERVIR 389 >gi|304413058|ref|ZP_07394531.1| RNA helicase [Candidatus Regiella insecticola LSR1] gi|304283901|gb|EFL92294.1| RNA helicase [Candidatus Regiella insecticola LSR1] Length = 446 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 197/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+ Y T +QE + L +D++ SAQTG+GKT F L L LL+EN Sbjct: 50 AITEQKYSAPTPIQEKAIPEVLAGRDLMASAQTGTGKTAGFTLPLLQ-LLSENQSLIKGR 108 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G ++ + V GGVS++ + L+ G I+V TP Sbjct: 109 RPVRALILTPTRELAAQIGDNVKNYSEFLKLRSMVVFGGVSINPQMMKLRGGVDILVATP 168 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D ++++ ++ +VLDEAD MLD+GF DI IL P KR+ L+FSAT S Sbjct: 169 GRLLDLEHQNAVDLAKIEILVLDEADRMLDMGFIHDIRRILAKLPAKRQNLLFSATFSND 228 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK + + ++ N I R V S + + ++ + +VF Sbjct: 229 IKLLAKKLLNNPAYIEVSPGNTTAKHITQRVHFVDKSRKRQLLSYMIGSQNWQQVLVFNR 288 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL +DG+ RV +ATD+AARG+D+ Sbjct: 289 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQ 348 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G ++ ++ + R ERL + + Sbjct: 349 LPHVVNYELPNVPEDYVHRIGRTGRAECSGEAISLVCVDEHKLLRDIERLLKNEIPRIAI 408 Query: 369 --WEPAPSVEA 377 ++P P+++A Sbjct: 409 DGYQPDPTIKA 419 >gi|256113603|ref|ZP_05454423.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 535 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|260564054|ref|ZP_05834540.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M] gi|260154070|gb|EEW89162.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M] Length = 510 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760] gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar SAW760] Length = 689 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 115/343 (33%), Positives = 195/343 (56%), Gaps = 15/343 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L +RG +L +Q + +P KDV+ AQTGSGKT++F L L L AEN+R Sbjct: 80 EMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAENER--KG 137 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 P + ++PTRELA+Q+ E + G +C+ GGV + + LQ+G ++VGT Sbjct: 138 KNPRVICLSPTRELAIQIAEE--FTQCSCGKFKVICVYGGVDIQGQINKLQSGVDVIVGT 195 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKR--RMLMF 185 PGR+ D + L + ++ +VLDEADEML++GF++++ I+D S PK+ + L+F Sbjct: 196 PGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLF 255 Query: 186 SATISPAITTLAKNY-QKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIVNILRYHG 243 SAT+ + +++ Y + DA +++ N Q + + A + + I +++R +G Sbjct: 256 SATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLIRVYG 315 Query: 244 -AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVFC T+A + + +F+ L G++ Q++R L R+ + V +ATD Sbjct: 316 RTGRTIVFCDTKAECTD-CAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLVATD 374 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ ++L+I + + +HR+GRT RAG++G ++ Sbjct: 375 VAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTI 417 >gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130] gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130] Length = 455 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 187/339 (55%), Gaps = 7/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL + GY + T +Q L L +D++ A+TGSGKT AF L + L E Sbjct: 32 EALEQVGYKSPTEIQSESLPHALEGRDIIGVAETGSGKTAAFALPILQKLWEEPKGL--- 88 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A +APTRELA Q+ ++ E L A G AV +GG+ + + L H+VV TP Sbjct: 89 ---FACVLAPTRELAYQISQQFEALGAAMGARCAVIVGGMDLPTQAIALAKRPHVVVATP 145 Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL H+ KG ++ LK +VLDEAD +LD+ F I+ IL PK+R +FSAT++ Sbjct: 146 GRLLQHLEETKGFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLIPKERTTYLFSATMTS 205 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + + VRV ++ + + S + +LV L D+ ++ + + I+F Sbjct: 206 KVAKLQRASLVNPVRVEVSGKYQTVSTLLQHYLLVPLKDKVVMLIYLANSLAQNSIIIFT 265 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T + +L F V L G+LSQ +R AL + G ++ +ATDVA+RG+D+P Sbjct: 266 RTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRKILVATDVASRGLDIP 325 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q Sbjct: 326 SVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQ 364 >gi|254719124|ref|ZP_05180935.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. 83/13] Length = 535 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|126343379|ref|XP_001380649.1| PREDICTED: similar to Gu protein [Monodelphis domestica] Length = 902 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 133/420 (31%), Positives = 227/420 (54%), Gaps = 22/420 (5%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 341 FSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLVEK 400 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L ++ AP L +APTREL++QV ++ + K + VA GG + + + Sbjct: 401 LQGDSQPRPRGRAPKILVLAPTRELSIQVSKDFSDITKK--LTVACFYGGTPYNGQIDLI 458 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 + G I+VGTPGR+ DH++ L+++ ++ VVLDE D+MLD+GF + +E IL + KK Sbjct: 459 RRGIDILVGTPGRIKDHLQNGRLDLTKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDS 518 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHS--DIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + +++ A+ S R Sbjct: 519 EDNPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAA 578 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++++ Y G+ I+FC T+ + L E + Q +L G++ Q++R LQ Sbjct: 579 VIGDVIQVYSGSHGRTIIFCETKKEAQELS--LNESIKQDAQSLHGDIPQKQREITLQGF 636 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 R+G+ V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + + Sbjct: 637 RNGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQK 696 Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRILQD--PLFLDSIQGDEKKMVD 405 Q + ++ R+A ++ PS I +DA R L P +++ + +K++D Sbjct: 697 KEQHQLAQVERQAGITFKRVGVPSASEIIKASSKDAIRFLDSVPPAAINNFRQTAQKLID 756 >gi|259909026|ref|YP_002649382.1| ATP-dependent RNA helicase RhlE [Erwinia pyrifoliae Ep1/96] gi|224964648|emb|CAX56162.1| Putative ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96] gi|283479042|emb|CAY74958.1| putative ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM 12163] Length = 471 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 134/371 (36%), Positives = 198/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q + L +D++ SAQTG+GKT F L L L + N Sbjct: 15 AVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG ++ + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D L++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCS 252 TLA+ + +V +A N + LV R ++++L G + +VF Sbjct: 195 KTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD-KKRKRELLSLLIGRGNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL +DG+ RV +ATD+AARGID+ + Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLVATDIAARGIDIEE 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ER+ RE + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERVLKREIPRMAI 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 DGFEPDPSIKA 384 >gi|322806278|emb|CBZ03846.1| ATP-dependent RNA helicase BA2475 [Clostridium botulinum H04402 065] Length = 376 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 188/346 (54%), Gaps = 11/346 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L ++ + T +QE + DV+ AQTG+GKT+AF L + + + D Sbjct: 13 IIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMFENISPDID--- 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A L I PTRELA+Q+ E L + + GG + + + L+N H+V+ Sbjct: 70 ---AIQGLIITPTRELAIQITEEAMKLKEAKDLNILATYGGKDIGSQIKKLKNNIHLVIA 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ LN LK +VLDEADEML +GF++D+ I++++P+KR+ L FSAT++ Sbjct: 127 TPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMN 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAI 248 + LA +D + I E +I + VL+ +DR + IL AI Sbjct: 187 SEVKKLAYKNMRDPKLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMAI 244 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ V + L + + L G ++Q +R ++ ++ + IATDVAARG+ Sbjct: 245 IFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGL 304 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 D+ + V + ++ N E+ +HR GRTGRAG KG + +FV P++ Q Sbjct: 305 DITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350 >gi|313234298|emb|CBY10365.1| unnamed protein product [Oikopleura dioica] Length = 408 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 118/351 (33%), Positives = 191/351 (54%), Gaps = 7/351 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64 IP+ I + +S+ GY + T +Q + ++ +D++ A+TGSGKT+AF + L + L Sbjct: 9 IPENILKIISDAGYKDPTPIQRQAIPIGMQNRDIIGVAETGSGKTLAFLVPLLVWIDSLP 68 Query: 65 ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 N R A P A+ +APTRELA Q+ E+ + G+ IGG S + L+ Sbjct: 69 RNIRVEDADKGPYAMILAPTRELATQIEEEVVKFGSPLGIRSVAVIGGASREEQGLKLRM 128 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IV+ TPGRL D I + L +S +VLDEAD M+D+GF +++ IL P R+ + Sbjct: 129 GCEIVIATPGRLIDVIENRYLVLSQCTYIVLDEADRMIDMGFEPEVQKILSHMP-FRQTV 187 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MF+AT+ P + +AK + + V I S + I +A V + +++IL Sbjct: 188 MFTATMPPPVERIAKTFMRRPCTVYIGSVGKAADRIVQKAFFVPDGQKAKKMISILEDEN 247 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 IVF + + + L ++ + ++L G Q +R AL +++G V +A Sbjct: 248 CLEQGPVIVFVNQKKGCDVLARQLEKYGYDAISLHGGKGQDQRDYALACIKNGEKNVLVA 307 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 TDVA RGID+ D+ L+++ +++ N E+ HR GRTGRAG+ G +V + Q+ Sbjct: 308 TDVAGRGIDIKDVSLILNYDMAKNIEDYTHRIGRTGRAGKSGKAVTFLTQD 358 >gi|257205736|emb|CAX82519.1| belle [Schistosoma japonicum] Length = 939 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 206/384 (53%), Gaps = 27/384 (7%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 QVI E ++ Y++ T VQ+ L ++D++ AQTGSGKT AF L + + L + Sbjct: 167 QVIKENVTRAQYIHPTPVQKYALPIISAKRDLMACAQTGSGKTAAFLLPILNMLFEDKHC 226 Query: 69 FSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +P ++ P+AL +APTREL+ Q+ E ++ + V GG S+ + R+L Sbjct: 227 ENPEASTLNCIAYPVALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGGASILAQIREL 286 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK- 178 +G +++V TPGRL D + +++ ++ VLDEAD MLD+GF I I++ P Sbjct: 287 SHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRRIVEQHGMPPA 346 Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 KR+ LMFSAT I TLA+++ + + + + +I + VA D+ + +V Sbjct: 347 GKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVR 406 Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +L+ A+VF T+ K L + F V ++ G+ Q ER +ALQ R GR Sbjct: 407 LLQGKDPDGLALVFVETKRGADILAKFLCQLNFPVASIHGDRPQTEREHALQSFRSGRTP 466 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 + IAT VAARG+D+P+++ VI+ +L S+ E +HR GRTGR G+ G A Sbjct: 467 ILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQSG------------SA 514 Query: 357 ERLFREANVSVVWEPAPSVEAIRE 380 F E N +VV + VE +RE Sbjct: 515 TSFFSEKNQNVVRD---LVELLRE 535 >gi|302875685|ref|YP_003844318.1| DEAD/DEAH box helicase domain-containing protein [Clostridium cellulovorans 743B] gi|307689114|ref|ZP_07631560.1| DEAD/DEAH box helicase domain-containing protein [Clostridium cellulovorans 743B] gi|302578542|gb|ADL52554.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans 743B] Length = 472 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 112/322 (34%), Positives = 176/322 (54%), Gaps = 6/322 (1%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T VQE ++ L D++V AQTGSGKT AF + + L+A + A AL + PT Sbjct: 26 TEVQEKVIPLALSGDDIIVKAQTGSGKTAAFAIPIIENLIANEN------AVQALVLTPT 79 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELAVQV L + G + ++ L HIVVGTPGR DHI Sbjct: 80 RELAVQVQETFSTLGVYKKIKTVAVYGKQPMSIQKNQLSQRVHIVVGTPGRTLDHIEKGN 139 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L+IS +K +++DEADEML++GF D++E I+ PK R+ LMFSAT+S I L Y Sbjct: 140 LDISSVKYLIIDEADEMLNMGFIDEVENIIKKVPKLRQTLMFSATLSYEIKELINKYMFS 199 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 + + E + I+ + + + + N + ++++ AI+FC T+ +V+ Sbjct: 200 PKLIELTPETLTVAKINQKYYEIDENLKYNLLEDLIKTEDITKAILFCRTKKNVAYLASR 259 Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323 + + V + G++ Q +R +AL+ ++ + + +ATDVAARGID+ ++ V + ++ Sbjct: 260 MRVSSYSVTEIHGDMLQNDRLSALKAFKEDKFQFIVATDVAARGIDVNNVSHVFNYDIPL 319 Query: 324 NPENLLHRSGRTGRAGRKGMSV 345 E +HR GRTGRAG G ++ Sbjct: 320 ELEAYVHRIGRTGRAGSSGEAI 341 >gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] Length = 632 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 190/342 (55%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L R Sbjct: 15 AIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPILERLFPAGHPDREQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + +YA+ V+ CI GGV ++ + + L G + Sbjct: 75 HGPKQ-PRVLVLTPTRELAAQVHDSFK-IYARDLKFVSACIFGGVGMNPQVQALAKGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++SH++ +VLDEAD MLD+GF D++ +L P +R+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLARLPAQRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT LA + R+ + N I+ R +A S + + +++ + Sbjct: 192 ATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITQGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H A+ G SQ R+ AL + + R+ +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKASKVRILVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353 >gi|209964678|ref|YP_002297593.1| DeaD [Rhodospirillum centenum SW] gi|209958144|gb|ACI98780.1| DeaD [Rhodospirillum centenum SW] Length = 528 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 182/335 (54%), Gaps = 4/335 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+SE GY T +QE + L+ +DVL AQTG+GKT +F L + L Sbjct: 10 PEVL-QAISEVGYTTPTPIQEKAIPWVLQGRDVLGCAQTGTGKTASFTLPMIEILAQGRA 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L + PTRELA QV E + +A+ IGG S + + L+ G + Sbjct: 69 R---ARMPRSLILEPTRELAAQVADNFEIYGKYHKLNMALLIGGESFGDQVKKLERGVDV 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGR+ D + +S +K +V+DEAD MLD+GF DIE I+ PK R+ L FSA Sbjct: 126 LIATPGRMIDLFERGNILLSDIKILVIDEADRMLDMGFIPDIERIVGLLPKLRQTLFFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ P I LA + + + +A + + + D+ + ++L+ KNA Sbjct: 186 TMPPEIRRLADQFLMNPREITVAPPASPAATVTQALAVAYDEDKRKVLRHLLQTEDVKNA 245 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +FC+ + V + L+ H F AL G++ Q +R+ L+ + G + + +DVAARG Sbjct: 246 FIFCNRKKDVGILHQSLSRHGFNAGALHGDMVQSKRTETLEAFKQGSIDLLVCSDVAARG 305 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 ID+ + V + ++ N E+ +HR GRTGRAG G Sbjct: 306 IDIKGVSHVFNFDVPFNAEDYVHRIGRTGRAGLTG 340 >gi|168185001|ref|ZP_02619665.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Bf] gi|237795441|ref|YP_002862993.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium botulinum Ba4 str. 657] gi|182671947|gb|EDT83908.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Bf] gi|229262402|gb|ACQ53435.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum Ba4 str. 657] Length = 376 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 188/346 (54%), Gaps = 11/346 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L ++ + T +QE + DV+ AQTG+GKT+AF L + + + D Sbjct: 13 IIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMFENISPDID--- 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A L I PTRELA+Q+ E L + + GG + + + L+N H+V+ Sbjct: 70 ---AIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIHLVIA 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ LN LK +VLDEADEML +GF++D+ I++++P+KR+ L FSAT++ Sbjct: 127 TPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMN 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAI 248 + LA +D + I E +I + VL+ +DR + IL AI Sbjct: 187 SEVKKLAYKNMRDPKLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMAI 244 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ V + L + + L G ++Q +R ++ ++ + IATDVAARG+ Sbjct: 245 IFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGL 304 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 D+ + V + ++ N E+ +HR GRTGRAG KG + +FV P++ Q Sbjct: 305 DITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350 >gi|332520339|ref|ZP_08396801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043692|gb|EGI79887.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 373 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 119/351 (33%), Positives = 193/351 (54%), Gaps = 12/351 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 ++L E T +QE + ++ K D + AQTG+GKT A+GL + + A Sbjct: 15 KSLKELDIKTPTEIQEQAIPILIKSKVDFVGLAQTGTGKTAAYGLPVLHKVDANKKSVQ- 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 L IAPTREL Q+ ++L Y + V GG + + +L+ HI+V Sbjct: 74 -----GLIIAPTRELVQQIKKQLFKFTKYNDKKIFVEGVYGGEKIDIQISNLKRPTHIIV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSAT 188 TPGRL D + +++ H+ +VLDEADEML +GF+ D+ ILD++ K R +FSAT Sbjct: 129 ATPGRLVDLLDKNIIDLKHINTLVLDEADEMLSMGFKKDLNIILDATTKSARNTWLFSAT 188 Query: 189 ISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 + + + Y KDA RV + + +++I + V + D+ + I+ +L + Sbjct: 189 MPTDLKAIVNRYISKDAARVEVNRNSIVNANISHHFVQTPIVDKAHTIMRLLDDRADERG 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+A + L + F V AL G+++Q+ER ++ ++ ++ I+TDV+ARG Sbjct: 249 IIFCRTKAGTQALKQQLQKEGFNVDALEGDMTQKERDKVMRAFKNTNLQILISTDVSARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357 ID+ +L +IH +L + E HRSGRT RAG+KG S+ V+P +++ AE Sbjct: 309 IDVNNLAFIIHHQLPEHIEYYTHRSGRTARAGKKGESIALVLPSELKKVAE 359 >gi|17987217|ref|NP_539851.1| ATP-dependent RNA helicase RHLE [Brucella melitensis bv. 1 str. 16M] gi|225852555|ref|YP_002732788.1| DEAD/DEAH box helicase domain-containing protein [Brucella melitensis ATCC 23457] gi|256044711|ref|ZP_05447615.1| DEAD/DEAH box helicase domain protein [Brucella melitensis bv. 1 str. Rev.1] gi|17982889|gb|AAL52115.1| ATP-dependent RNA helicase rhle [Brucella melitensis bv. 1 str. 16M] gi|225640920|gb|ACO00834.1| DEAD/DEAH box helicase domain protein [Brucella melitensis ATCC 23457] Length = 535 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 451 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 199/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GYV T +Q+ + L+ +D++ SAQTG+GKT F L L L+ +N+ + Sbjct: 15 AVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLI-QNEPHAKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QVG + + V GGVS++ + L+ G I+V TP Sbjct: 74 RPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++ ++ +VLDEAD MLD+GF DI +L P +R+ L+FSAT S Sbjct: 134 GRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ + + V +A N I V + + + ++ + +VF Sbjct: 194 IKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ + Sbjct: 254 TKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEE 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL ++ + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAI 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 AGYEPDPSIKA 384 >gi|157826077|ref|YP_001493797.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford] gi|157800035|gb|ABV75289.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford] Length = 410 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 1 MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + + AL + PTRELA Q+ L + + AV IGG +H++ Sbjct: 60 SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKMNSAVLIGGEPMHKQFMQ 111 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ ++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P+KR Sbjct: 112 LKKNPKAIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I +++ Y + VR+ + + N+ ++I ++ V+ ++ + + L Sbjct: 172 QVLMFSATMPKHIIVVSQKYLNNPVRITVGAANKAAAEIKQESIHVSDKEKFSELTKQLG 231 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + I+F T+ S + K+L + A+ G+LSQ++R + R R+ +A Sbjct: 232 NREG-SVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDIIR 345 >gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS] gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS] Length = 723 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 115/343 (33%), Positives = 195/343 (56%), Gaps = 15/343 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L +RG +L +Q + +P KDV+ AQTGSGKT++F L L L AEN+R Sbjct: 80 EMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAENER--KG 137 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 P + ++PTRELA+Q+ E + G +C+ GGV + + LQ+G ++VGT Sbjct: 138 KNPRVICLSPTRELAIQIAEE--FTQCSCGKFKVICVYGGVDIQGQINKLQSGVDVIVGT 195 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKR--RMLMF 185 PGR+ D + L + ++ +VLDEADEML++GF++++ I+D S PK+ + L+F Sbjct: 196 PGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLF 255 Query: 186 SATISPAITTLAKNY-QKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIVNILRYHG 243 SAT+ + +++ Y + DA +++ N Q + + A + + I +++R +G Sbjct: 256 SATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLIRVYG 315 Query: 244 -AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVFC T+A + + +F+ L G++ Q++R L R+ + V +ATD Sbjct: 316 RTGRTIVFCDTKAECTD-CAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLVATD 374 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ ++L+I + + +HR+GRT RAG++G ++ Sbjct: 375 VAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTI 417 >gi|18410973|ref|NP_567067.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] gi|42572719|ref|NP_974455.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] gi|79315530|ref|NP_001030884.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana] gi|75329861|sp|Q8LA13|RH11_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 11 gi|21593670|gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|332646270|gb|AEE79791.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana] gi|332646271|gb|AEE79792.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana] gi|332646272|gb|AEE79793.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana] Length = 612 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 124/366 (33%), Positives = 197/366 (53%), Gaps = 20/366 (5%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AENDRFSPASAP 75 YV T VQ + L E+D++ AQTGSGKT AF + S ++ E R S A P Sbjct: 171 YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYP 230 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 A+ ++PTRELA Q+ E + +TGV V V GG +H++ R+L+ G I+V TPGRL Sbjct: 231 FAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRL 290 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK-RRMLMFSATISP 191 D + +++ ++ + LDEAD MLD+GF I I +D P+ R+ ++FSAT Sbjct: 291 NDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPS 350 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN----- 246 I LA ++ + + + + I R V SD+ + ++++L H + Sbjct: 351 QIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLL--HAQRETQDKQ 408 Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ L + F ++ G+ +QQER AL+ + GR + +ATDVA Sbjct: 409 SLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVA 468 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361 ARG+D+P + V++ +L ++ ++ +HR GRTGRAG+ G++ +N + R L + Sbjct: 469 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQ 528 Query: 362 EANVSV 367 EAN V Sbjct: 529 EANQEV 534 >gi|302879666|ref|YP_003848230.1| DEAD/DEAH box helicase domain-containing protein [Gallionella capsiferriformans ES-2] gi|302582455|gb|ADL56466.1| DEAD/DEAH box helicase domain protein [Gallionella capsiferriformans ES-2] Length = 504 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 186/343 (54%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+++ GY T VQ + L D+L AQTG+GKT F L + L + Sbjct: 16 NLAEPIMRAIADAGYTQPTPVQAQAIPLVLAGGDLLAGAQTGTGKTAGFTLPVLHLLNSR 75 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 A P L + PTRELA QV ++ + V GGV+++ + + L+ Sbjct: 76 PAANPGAGRPRCLILTPTRELAAQVEESVQTYGKYLSLKSLVMFGGVNINPQIKSLRGQV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+ K L++S ++ ++LDEAD MLD+GF DI+ IL PK R+ L+F Sbjct: 136 DILVATPGRLLDHVGQKTLDLSAVEILILDEADRMLDMGFIRDIKKILALLPKTRQNLLF 195 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I TL+ + V +A N + +VA + + + ++++++ K Sbjct: 196 SATFSEEIKTLSDGLLNNPGFVEVARRNTTSELVAQTVHMVAQKLKSHLLSHLIKHNDWK 255 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ +R + L A+ G SQ R+ AL +DG V +ATD+AA Sbjct: 256 QVLVFTRTKHGANRLAEKLNADGIPAAAIHGNKSQSARTKALSQFKDGTMPVLVATDIAA 315 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RG+D+ L V++ EL + PE+ +HR GRTGRAG G ++ ++ Sbjct: 316 RGLDIDMLPHVVNFELPNVPEDYVHRIGRTGRAGSNGAAISLV 358 >gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens] gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens] Length = 582 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 11/333 (3%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 Y T +Q L L +D+L A+TGSGKT AF L + LA+ PLAL Sbjct: 155 YTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQHCLAQPP-IRRGDGPLALV 213 Query: 80 IAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ +E++ + + G A+ +GG +++ +R +L+ G IVV TPGR DH Sbjct: 214 LAPTRELAQQIEKEVKAFCRSAEGFRTAIVVGGTNIYEQRSELRAGVEIVVATPGRFIDH 273 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ ++S + VVLDEAD MLD+GF I ++ S PKK + L+FSAT+ I LA+ Sbjct: 274 LQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQTLLFSATMPEEIEALAQ 333 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---------AIV 249 Y + +RV + + +++ + ++ +++ +L +++ IV Sbjct: 334 EYLDNPIRVKVGRVSSPTANVTQNLEKITEKEKIESLLALLVDEHSQSLDTNQPPPLTIV 393 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +A T L E + AL G SQ ER AL+ R G + +ATDVA+RG+D Sbjct: 394 FVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATDVASRGLD 453 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + + VI+ +L E+ +HR GRTGRAG G Sbjct: 454 VTGVAHVINLDLPKTMEDYVHRIGRTGRAGASG 486 >gi|312140568|ref|YP_004007904.1| dead/deah box helicase [Rhodococcus equi 103S] gi|311889907|emb|CBH49224.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] Length = 499 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 136/396 (34%), Positives = 202/396 (51%), Gaps = 21/396 (5%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE+ +P I AL++ G +Q L L +DVL +TGSGKT+AF + LA+ Sbjct: 27 FESLGVPAPIVSALADGGITAPFPIQVDTLPDTLAGRDVLGRGKTGSGKTLAFSIPLAAR 86 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L R P L +APTRELA Q+ LE L G+ V GGVS HR+ + L Sbjct: 87 LAGGKRR---PGKPRGLVLAPTRELATQITATLEPLAGALGLRVTTIFGGVSQHRQVKAL 143 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 ++G IVV PGRL D ++ + + + ++ +LDEAD M DLGF + IL ++P + Sbjct: 144 ESGVDIVVACPGRLEDLMKQRFVTLDAVEMTILDEADHMADLGFLPGVTRILTATPSGGQ 203 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSAT+ + L K + ++ V ++ N + + + VA + A+V+ L Sbjct: 204 RLLFSATLDNGVDKLVKRFLQNEVLHSVDEANSPVAAMTHHVYDVAGVEAKKALVHKL-A 262 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G I+F T+ + + L E V L G LSQ R L +G ARV +AT Sbjct: 263 SGQGRRILFMRTKHQARKLARQLTESGIPSVDLHGNLSQNARDRNLAAFSEGTARVLVAT 322 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+ + ++ELV+H + + + LHRSGRT RAG G V ++ ++ L R Sbjct: 323 DVAARGVHVDEVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTIVLPEQRKDLSALMR 382 Query: 362 EAN---------------VSVVWEPAPSVEAIRERD 382 +A+ V++V EPAP V + D Sbjct: 383 KASIKVTPVQVTADSEHVVTLVGEPAPHVAPAPKTD 418 >gi|308178316|ref|YP_003917722.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] gi|307745779|emb|CBT76751.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117] Length = 515 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 123/364 (33%), Positives = 194/364 (53%), Gaps = 3/364 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + + L++ G + +QEA L L DVL QTGSGKT+AF L L + L A+ Sbjct: 10 VPEYLAKVLADSGIESAFPIQEATLPSTLAGGDVLGRGQTGSGKTLAFSLPLVARL-ADR 68 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + A P AL +APTRELA Q+ + +E L G+ V GGV+ R+ + + GA Sbjct: 69 PQRRKARFPRALIMAPTRELATQIAKTVEPLAKAAGLRTTVIYGGVAQSRQEKAMNEGAD 128 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ PGRL D I+ K +++S L+ VLDEAD M D+GF + I+D P + ++FS Sbjct: 129 IVIACPGRLDDLIKQKIVDLSQLEISVLDEADHMADMGFLPVVRRIMDRMPTGIQHMLFS 188 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + +AK Y ++ + + +++ +++ D+ + ++ +L G Sbjct: 189 ATLDNGVDKVAKRYLSHPTIHSVDAPKAAVNTMEHHVFVISNDDKKD-LIRVL-AQGTAR 246 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ + L++ V L G LSQ R L G A+V +ATDVAAR Sbjct: 247 RIMFMRTKHHAKKMALTLSKAGVPAVDLHGNLSQNARDRNLAAFASGEAKVLVATDVAAR 306 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+ + +ELV+H + + + HRSGRT RAG G V + + Q L ++A + Sbjct: 307 GVHVDGVELVVHVDPPAEHKAYTHRSGRTARAGSDGTVVTICTPDQQGDVSTLLKQAGLK 366 Query: 367 VVWE 370 V +E Sbjct: 367 VPFE 370 >gi|295696219|ref|YP_003589457.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912] gi|295411821|gb|ADG06313.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912] Length = 526 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 205/374 (54%), Gaps = 7/374 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ + G+ + +Q A + L+ KDV+ AQTG+GKT AFG+ + + Sbjct: 13 VQQAIDDMGFEEPSPIQAACIPLVLQGKDVIGQAQTGTGKTAAFGVPIIEMM-------G 65 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA+QV EL + V GG S+ + R LQ G +V+G Sbjct: 66 TGRHVQALILTPTRELAIQVAGELRKIAKYARVRTLPIYGGQSIGHQIRALQQGVGVVIG 125 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+R L + ++ VVLDEADEMLD+GF +DIE IL +P++R+ L+FSAT Sbjct: 126 TPGRVLDHLRRGTLKLDKVRTVVLDEADEMLDMGFIEDIEAILKETPQERQTLLFSATFP 185 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + LA Y K+ V + ID V ++ ++ I+ I+F Sbjct: 186 HEVKQLAVRYMKNPEHVTVNRGEMTVPLIDQIYYKVLERNKLESLCRIIDSEDVSLGIIF 245 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V T+ L + V L G+LSQ +R ++ R+G +ATDVAARGID+ Sbjct: 246 CRTKRGVDELTEALLARGYLVDGLHGDLSQAQRDRVMKKFRNGDIEFLVATDVAARGIDV 305 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ VI+ ++ +PE+ +HR GRTGRAGR+G+++ ++ + +++ RE +V Sbjct: 306 TNVTHVINYDIPQDPESYVHRIGRTGRAGRRGLAITLVTPREFKLLKQIERETQAPLVGR 365 Query: 371 PAPSVEAIRERDAQ 384 P++ + ER A+ Sbjct: 366 EVPTLADVAERVAE 379 >gi|331006961|ref|ZP_08330204.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989] gi|330419223|gb|EGG93646.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989] Length = 451 Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 120/351 (34%), Positives = 195/351 (55%), Gaps = 16/351 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFS 70 A+++ G+ + +Q L L D+L AQTG+GKT AF A+ LL E +R+ Sbjct: 83 AIADLGFEYCSPIQAQSLPNTLNGHDMLGKAQTGTGKTAAFLTAIIDDLLKNPLEGERY- 141 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129 A AL IAPTREL VQ+ + + L T + V +GG+ ++++ ++N I+V Sbjct: 142 -AGEARALIIAPTRELVVQIAEDAKLLVKHTDLTVHTLVGGMDYTKQQQGVRNKFVDILV 200 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSA 187 TPGRL D K +++ ++ +VLDEAD MLD+GF + I+ +P+ R+ L FSA Sbjct: 201 ATPGRLLDFASNKDVHLDQVEILVLDEADRMLDMGFIPQVRRIVRLTPRCENRQTLFFSA 260 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T + + LA+ + ++ V I E+ ++ LVA S++ + N+ R ++ Sbjct: 261 TFTDDVMRLAEQWTQNPCSVEIEPESVATDTVEQHVYLVAASEKYKLLTNLARQPDVESL 320 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF + R R + L +H F LSGE++Q +R L + G+ ++ +ATDVA RG Sbjct: 321 IVFGNRRDECRRLHEQLVKHGFSAGLLSGEVAQNKRIKTLDGFKSGKIKILVATDVAGRG 380 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350 I + ++ V++ L PE+ +HR GRTGRAG+KG+S+ F++P+ Sbjct: 381 IHINNISHVVNFSLPEEPEDYVHRIGRTGRAGKKGVSISFACEDDAFLLPE 431 >gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3] gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3] Length = 426 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 189/342 (55%), Gaps = 2/342 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + A+ E+GY + +QE + L KDV+ +AQTG+GKT F L L + L+ + Sbjct: 8 LPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLLANLM-KG 66 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +R + A+ L + PTRELA Q+ + + AV GGV ++ + + L+ G Sbjct: 67 ER-AKANQVRVLILTPTRELAAQIHESVCNYGQNLPLRSAVVFGGVKINPQMQLLRRGVD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL D + + L+ +VLDEAD MLD+GF DI+ I+ P+KR+ L+FS Sbjct: 126 VLVATPGRLLDLYQQNAVRFKQLEVLVLDEADRMLDMGFIHDIKRIIKFLPEKRQNLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LAK D V ++++ N + V + + + +++ + K Sbjct: 186 ATFSNDIRKLAKGLVNDPVEISVSPRNTTAESVTQFIYEVDKTKKSPLLSTLIKENKWKQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R K L A+ G SQ R+ AL ++G+ V +ATD+AAR Sbjct: 246 VLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASFKEGKITVLVATDIAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ LE V++ +L E+ +HR GRTGRAG KG ++ ++ Sbjct: 306 GIDIDQLEQVVNFDLPHVSEDYVHRIGRTGRAGNKGEAISLV 347 >gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A] gi|74662479|sp|Q7RY59|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3 gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A] Length = 515 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 119/353 (33%), Positives = 194/353 (54%), Gaps = 10/353 (2%) Query: 2 KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F++ I + EA GY N T +QE + L+ +D++ A+TGSGKT AF L + Sbjct: 90 KTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPIL 149 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 LL D+ +P AL +APTRELA Q+ + E L + + A+ +GG+ + + Sbjct: 150 QALL---DKPAPL---FALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAI 203 Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L H++V TPGRL DH+ + KG ++ ++ +V+DEAD +LD+ F +E IL P+ Sbjct: 204 ALGKKPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPR 263 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVN 237 +RR +FSAT+S + +L + +D ++V+++S S + V + +D +V Sbjct: 264 ERRTFLFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVY 323 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + + I+F T R +L + L G LSQ R AL R G + Sbjct: 324 LCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREI 383 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +ATDVAARG+D+P+++ VI+ +L + + +HR GRT RAG+ G ++ ++ Q Sbjct: 384 LVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQ 436 >gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 519 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 128/374 (34%), Positives = 200/374 (53%), Gaps = 8/374 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E+GYV T +Q+ + L+ +D++ SAQTG+GKT F L L L+ +N+ + Sbjct: 80 ILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLI-QNEPHA 138 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P+ AL + PTRELA QVG + + V GGVS++ + L+ G I+V Sbjct: 139 KGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILV 198 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D +++ ++ +VLDEAD MLD+GF DI +L P +R+ L+FSAT Sbjct: 199 ATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATF 258 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA+ + + V +A N I V + + + ++ + +V Sbjct: 259 SDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLV 318 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D Sbjct: 319 FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLD 378 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVS 366 + +L V++ EL + PE+ +HR GRTGRA G + V V + R ERL ++ Sbjct: 379 IEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPR 438 Query: 367 VV---WEPAPSVEA 377 + +EP PS++A Sbjct: 439 IAIAGYEPDPSIKA 452 >gi|126739425|ref|ZP_01755118.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6] gi|126719525|gb|EBA16234.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6] Length = 468 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 121/349 (34%), Positives = 193/349 (55%), Gaps = 2/349 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ I L+ G + T +Q + L +DVL AQTG+GKT AFG+ L S +L + Sbjct: 33 GLPKHILTRLANMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLISRML-D 91 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R L +APTRELA Q+ L+ L T + V + +GGVS++ + + G Sbjct: 92 YGRKPAGKTVRGLVLAPTRELANQIAETLKALTEGTPMKVGLVVGGVSINPQISRIARGT 151 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + L++ +VLDEAD+MLDLGF + I P++R+ ++F Sbjct: 152 DILVATPGRLLDILDRDALDLGSCDFLVLDEADQMLDLGFIHALRKISALLPEERQTMLF 211 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + +A +Y K VR+ + + + + +A +++ + + +L H + Sbjct: 212 SATMPKQMNEIANSYLKRPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLANHKDE 271 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + + +VL + F A+ G SQ +R AL + G +V +ATDVAA Sbjct: 272 RTLVFGRTKYGMEKLMRVLEKAGFAAAAIHGNKSQGQRERALAAFKSGEIKVLVATDVAA 331 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 RG+D+PD++ V + EL + P+ +HR GRT RAG+ G +V F P M+ Sbjct: 332 RGLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGEAVAFCAPDEME 380 >gi|222054409|ref|YP_002536771.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32] gi|221563698|gb|ACM19670.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32] Length = 451 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 193/371 (52%), Gaps = 3/371 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I +A++ GY T +QE + L KD++ SAQTG+GKT AF L L + Sbjct: 11 LILKAIAACGYTTPTPIQEQAIPLALEGKDLIASAQTGTGKTAAFTLPALERLSVRSP-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P P L + PTRELA QV + V +GG+ + + L ++V Sbjct: 69 IPGRGPRILVLTPTRELANQVTDAVRNYGKFIRVTSGAILGGMPYREQLQLLSRPVDLIV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ +N+S L+ ++LDEAD MLD+GF +D++ I ++P R+ L+F+AT+ Sbjct: 129 ATPGRLIDHLDRGRINLSRLELLILDEADRMLDMGFSEDVDRIAAAAPANRQTLLFTATM 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKNAI 248 + LA+ KD VR+ IA + H I+ R V L + + +++ AI Sbjct: 189 DDVMAKLAQRLLKDPVRIEIAGKKMTHEQIEQRLHVADNLQHKTRMLQHLIADGTVTKAI 248 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +T+ + L AL G++SQ R+ + MR G+ R+ +ATDVAARG+ Sbjct: 249 IFSATKRDADLLARDLHAQGHAAAALHGDMSQNARNKTIHNMRRGKIRLLVATDVAARGL 308 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ + VI+ +L E+ +HR GRTGRAG G+++ N +R+ R ++ Sbjct: 309 DVTGISHVINFDLPKFAEDYVHRIGRTGRAGATGIAISFASLNDLNYLDRIERYTGQTLP 368 Query: 369 WEPAPSVEAIR 379 P +E R Sbjct: 369 MHVIPGLEPTR 379 >gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116] gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116] Length = 527 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 184/337 (54%), Gaps = 4/337 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L N + Sbjct: 14 KAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRVRS 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + AL + PTRELA QV +E ++Y++ + AV GGV ++ + L+ GA ++V T Sbjct: 72 NHIRALVLTPTRELAAQV-QENVFMYSRHLPLTSAVVFGGVKINPQMLRLRKGADVLVAT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + L+ +VLDEAD MLD+GF DI IL+ PK+R+ L+FSAT S Sbjct: 131 PGRLMDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILELLPKQRQNLLFSATFSN 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LAK + V +++ N ++ + + +V +++ K +VF Sbjct: 191 EIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQVLVFT 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R K L + A+ G SQ R+ AL + G RV +ATD+AARGID+P Sbjct: 251 KTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGIDIP 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 311 QLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|226949308|ref|YP_002804399.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A2 str. Kyoto] gi|226844168|gb|ACO86834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A2 str. Kyoto] Length = 376 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 121/347 (34%), Positives = 189/347 (54%), Gaps = 13/347 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L ++ + T +QE + DV+ AQTG+GKT+AF LL + S Sbjct: 13 IIDVLKKQRIIEPTPIQEESIMFIKNGNDVIAEAQTGTGKTLAF-------LLPMFENIS 65 Query: 71 P-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P +A L I PTRELA+Q+ E L + + GG + + + L+N H+V+ Sbjct: 66 PDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIHLVI 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ LN LK +VLDEADEML +GF++D+ I++++P+KR+ L FSAT+ Sbjct: 126 ATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATM 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNA 247 + + LA +D + I E +I + VL+ +DR + IL A Sbjct: 186 NSEVKKLAYKNMRDPRLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMA 243 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V + L + + L G ++Q +R ++ ++ + IATDVAARG Sbjct: 244 IIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARG 303 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 +D+ + V + ++ N E+ +HR GRTGRAG KG + +FV P++ Q Sbjct: 304 LDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350 >gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Ciona intestinalis] Length = 672 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 126/362 (34%), Positives = 205/362 (56%), Gaps = 23/362 (6%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L ++G L +Q N KDV+ A+TG+GKT++F + L L+ N Sbjct: 105 LKKKGVAYLFPIQIQSFNHVYDGKDVVAQARTGTGKTLSFAIPLVEKLIM-NRCKDYGRP 163 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133 P L +APTRELA+QV ++ + + + + +VCI GG ++ R ++ G IVVGTPG Sbjct: 164 PKVLVMAPTRELAIQVRKDFQDI---SQGLSSVCIYGGTPYFQQERSMRGGVDIVVGTPG 220 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR-----MLMFSAT 188 R+ DH++ L + ++ VVLDE D+MLD+GF +E IL + + R L+FSAT Sbjct: 221 RIMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVEEILGYAYTEEREGPPQTLLFSAT 280 Query: 189 ISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 P + ++ Y + + V++ S R + +++ A+ SDR I N+++ + Sbjct: 281 CPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEHLAIRCQYSDRAECIGNVVQMYSG 340 Query: 245 KN--AIVFCSTRASVSRFTKVLAEHLFQVVA--LSGELSQQERSNALQMMRDGRARVCIA 300 ++ A++F T+ + V+ E L Q A L G++ Q++R L+ RDG R +A Sbjct: 341 QHGRAMIFTDTKKDANEL--VVCEALQQQKAQVLHGDIEQRQREITLKAYRDGTVRCLVA 398 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAE 357 T+VAARG+D+P+++LVI S+ ++ +HRSGRTGRAGR G+ V F P+ M ++ E Sbjct: 399 TNVAARGLDIPEIDLVIQTSPPSDIDSYIHRSGRTGRAGRTGVCVCFYKPREDMMIKKVE 458 Query: 358 RL 359 R+ Sbjct: 459 RV 460 >gi|90417199|ref|ZP_01225126.1| putative ATP-dependent RNA helicase DbpA [marine gamma proteobacterium HTCC2207] gi|90330975|gb|EAS46236.1| putative ATP-dependent RNA helicase DbpA [marine gamma proteobacterium HTCC2207] Length = 466 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 200/389 (51%), Gaps = 11/389 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ GY +T +Q L L KDV+ A+TGSGKT F L L + L + R Sbjct: 23 LASLGYSEMTPIQAQALPSILASKDVIAKAKTGSGKTATFSLGLLNKLDVKRFRVQ---- 78 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV E+ L + V GGV+ + L++GAHI+VGTPG Sbjct: 79 --TLVLCPTRELADQVAAEIRKLARGIHNIKVLTLCGGVAFGPQVGSLEHGAHIIVGTPG 136 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+R LN+ +L ++LDEAD MLD+GF+ ++ I+ P++R+ ++FSAT I Sbjct: 137 RVEDHLRKANLNLDNLTTLILDEADRMLDMGFQQALDDIVGYMPRQRQTMLFSATYPEKI 196 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +A+ + V V + + S ++ + R A+ +L+ H + ++FC+T Sbjct: 197 DKIAQRIMRSPVTVEVQDSHSSQSIVETLYQIDNDQSRIEAVRLLLQAHQPETTLIFCNT 256 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R L ++ AL G+L Q++R L + V +ATDVAARG+D+ L Sbjct: 257 KIETDRVANELRAVGYEASALHGDLEQKDRDQTLACFANRSVSVLVATDVAARGLDIDAL 316 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 ++VI+ +++ E HR GRTGRAG +G++ + Q + + L P Sbjct: 317 DMVINYQMAQELEVHTHRIGRTGRAGAQGIACSLYTQKETYKIDLLEDYLEQKFNRGDLP 376 Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKK 402 +E +RE + P+ I G +K+ Sbjct: 377 HLELLRE----PVFYPPMVTIHIGGGKKQ 401 >gi|148379972|ref|YP_001254513.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. ATCC 3502] gi|153932857|ref|YP_001384271.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str. ATCC 19397] gi|153936987|ref|YP_001387810.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str. Hall] gi|148289456|emb|CAL83553.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152928901|gb|ABS34401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. ATCC 19397] gi|152932901|gb|ABS38400.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A str. Hall] Length = 376 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 188/346 (54%), Gaps = 11/346 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L ++ + T +QE + DV+ AQTG+GKT+AF L + + + D Sbjct: 13 IIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMFENISPDID--- 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A L I PTRELA+Q+ E L + + GG + + + L+N H+V+ Sbjct: 70 ---AIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIHLVIA 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ LN LK +VLDEADEML +GF++D+ I++++P+KR+ L FSAT++ Sbjct: 127 TPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMN 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAI 248 + LA +D + I E +I + VL+ +DR + IL AI Sbjct: 187 SEVKKLAYKNMRDPKLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMAI 244 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ V + L + + L G ++Q +R ++ ++ + IATDVAARG+ Sbjct: 245 IFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGL 304 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 D+ + V + ++ N E+ +HR GRTGRAG KG + +FV P++ Q Sbjct: 305 DITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350 >gi|167617991|ref|ZP_02386622.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4] Length = 435 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 198/372 (53%), Gaps = 11/372 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A++E GY T +Q + L D+L AQTG+GKT F L + L AEN Sbjct: 15 AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--G 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 73 ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA + + +A N I + V + + +++R H +VF Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID+ Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTLQVLVATDIAARGIDI 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE + Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREISQE 372 Query: 367 VV--WEPAPSVE 376 V+ +EP P+ + Sbjct: 373 VIPGFEPDPNAK 384 >gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32] gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32] Length = 446 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 181/341 (53%), Gaps = 3/341 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ +GY T +Q + D+L AQTG+GKT AF L + +L EN Sbjct: 15 AIASQGYTMPTPIQTQAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ-MLGENIPPEKRR 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV ++ + + + GGV++ + L G IVV TPG Sbjct: 74 RPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIERLHRGVDIVVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH +N+S +K +VLDEAD MLDLGF D I+ + + P KR+ L+FSAT S +I Sbjct: 134 RLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIQKVAEYLPVKRQTLLFSATYSQSI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCS 252 LA R+ +A N +D +A+ R +++ L G N + VF Sbjct: 194 KQLADELLNKPRRIEVARSN-IAADAVTQAIYQVEKSRKREMLSFLISRGKWNQVLVFAR 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + T+ L + A+ SQ R+ L R G RV +ATDVAARG+D+ Sbjct: 253 TRYGADKLTEELLYDGIKAAAIHSNKSQSIRNRTLAEFRRGEFRVLVATDVAARGLDIEQ 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 L V++ +L PE+ +HR GRTGRAG++G+++ ++ Q Sbjct: 313 LPHVVNYDLPQVPEDYVHRIGRTGRAGKEGIALSLVSHEEQ 353 >gi|71891896|ref|YP_277626.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796002|gb|AAZ40753.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 569 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 168/556 (30%), Positives = 262/556 (47%), Gaps = 39/556 (7%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I L + GY +Q + L DVL A TGSGKT AF L L + N Sbjct: 17 IVNVLHDVGYTKPLPIQIQCIPYLLAGYDVLGMAHTGSGKTAAFVLPLLHNVDINN---- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 S L I PTRELA+Q+GR Y K VV + GG S + L HI+ Sbjct: 73 --SCSQGLIITPTRELAIQIGRVCSNFAKYMKKINVVTL-YGGQSYGIQLSALNKRPHII 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ N+S LK +V+DEADEML +GF +D+E I+ + P KR+ +FSAT Sbjct: 130 VSTPGRLIDHLNRGTANLSQLKTLVIDEADEMLRMGFLEDVERIIKNIPVKRQTALFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNILRYHGAKN 246 + I ++ + + V I S ++I Y V ++ + A++ L Sbjct: 190 LPMGIRRISYRFMNNPKEVFIHSNTSMCANIRQSYWLVHSGIAKHE-ALMRFLETEDFDA 248 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF T+ + +++L + AL+G+++Q R L +R G+ + IATDVAAR Sbjct: 249 AIVFVRTKYATLEISEILERFGYNSAALNGDMNQTVRHQTLDRLRHGKLDILIATDVAAR 308 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ + LVI+ ++ N + +HR GRTGRAG G S+ + R + R+ + Sbjct: 309 GLDVHRISLVINYDIPINSDAYIHRIGRTGRAGCMGKSLLFVEHKEYRLLRHIERKIKLK 368 Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGF 420 + P+ E + + R + S + D+ + LL + P E +AA Sbjct: 369 IPEVQYPTSETLFDCRLSRFTNKVEYQLSTENDDLDVYRSLLPQIKPRRDLTTENLAAVL 428 Query: 421 LRI---HRAGLCAPEEI------TPVSLVSGRDR-FRDDSRAFKVGGGSR--DNFKGSSW 468 L+I +R + P+ I + + + S R FR ++R K S+ DN Sbjct: 429 LKIAQGNRPLVFPPDPIIKNKSVSKIRINSNRQNCFRVENRVIKTRLQSKISDNMDA--- 485 Query: 469 FSLSVGSKQKAEARWLMPMLCRS-SGINRQSIGAIRVQPDLTFVEV-----SADGVDLLR 522 + +SVG + R ++ +L + + I IG I++ +E+ S + L Sbjct: 486 YHISVGRNDGVKIRHIIRVLSNNIANIRYHEIGNIKLFSFHAIIELDKGLSSNKILTQLS 545 Query: 523 RTVKLDKGIQLKYLGG 538 L+K I +K+LG Sbjct: 546 HARILNKPINMKFLGN 561 >gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus] Length = 645 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 193/355 (54%), Gaps = 11/355 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ RFS Sbjct: 223 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 282 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GGVS + RD++ G +IV GT Sbjct: 283 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIRDIERGCNIVCGT 342 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + +S L+ +VLDEAD MLD+GF D+ ++ S S + R+ LMFS Sbjct: 343 PGRLLDMIGRGK-VGVSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 401 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I +A ++ K D + + + SD++ + V + ++++L+ G + Sbjct: 402 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGME 461 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ G+ Q+ER AL R G+ V +AT VAA Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 521 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359 RG+D+PD++ V++ +L +N + +HR GRTGR G G +V F P + A L Sbjct: 522 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDPDGDSQLASSL 576 >gi|225443496|ref|XP_002270644.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 709 Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 190/357 (53%), Gaps = 20/357 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65 P+++ +A+ GY + +Q A + L+++DV+ A+TGSGKT AF L + + + L Sbjct: 298 PELL-KAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPP 356 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G Sbjct: 357 ISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC 416 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------ 179 +V+ TPGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 417 EVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN 476 Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 R MFSAT+ PA+ LA+ Y ++ V V I + + I ++V Sbjct: 477 EDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKG 536 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 S++ + +L G K AIVF +T+ S K L + ++V L G SQ++R +L+ Sbjct: 537 SEKMPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKSQEQREISLE 596 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R R V +ATDVA RGID+PD+ VI+ ++ N E HR GRTGRAG+ G++ Sbjct: 597 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 653 >gi|226502378|ref|NP_001147853.1| ATP-dependent RNA helicase DDX41 [Zea mays] gi|195614138|gb|ACG28899.1| ATP-dependent RNA helicase DDX41 [Zea mays] Length = 616 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 122/353 (34%), Positives = 182/353 (51%), Gaps = 9/353 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + L ERG V T +Q L L +D++ A TGSGKT+ F L L L E Sbjct: 178 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 237 Query: 67 DRFS--PASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRER 118 P P + I P+RELA Q +E + +CIGGV + + Sbjct: 238 SLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGVDMRTQL 297 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ G HIVV TPGRL D + K +N+ + + + LDEAD ++DLGF DDI+ + D Sbjct: 298 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 357 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AKN V VN+ + D+ V R ++ Sbjct: 358 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 417 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ ++FC +A V + L + VA+ G Q+ER NA+ + GR V Sbjct: 418 LQ-KTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 476 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +ATDVA++G+D PD++ VI+ ++ + EN +HR GRTGR G+ G++ I +N Sbjct: 477 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 529 >gi|163843319|ref|YP_001627723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis ATCC 23445] gi|163674042|gb|ABY38153.1| DEAD/DEAH box helicase domain protein [Brucella suis ATCC 23445] Length = 535 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQMQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P + V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|311032981|ref|ZP_07711071.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13] Length = 375 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 115/333 (34%), Positives = 188/333 (56%), Gaps = 7/333 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +L G T +QE + L DV+ AQTG+GKT+AF L + L + D + Sbjct: 13 VNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLPI----LEKVDVNN 68 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVV 129 P + AL + PTRELA Q+ +E++ L + V GG V+ + + L+ H++V Sbjct: 69 PETQ--ALILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLKGAQHVIV 126 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+R +++S + +V+DEAD+ML +GF DI+ I R+ ++FSATI Sbjct: 127 ATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQTMLFSATI 186 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LAK Y K + IA + + I++ AV ++ ++++++ H AI+ Sbjct: 187 PNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDRRKEGTMLHLIKEHNPYLAII 246 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+A V + T+VL + AL G++ Q +R+ A++ R+ + + +ATDVAARG+D Sbjct: 247 FCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLVATDVAARGLD 306 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + + V + ++ + E +HR+GRTGRA G Sbjct: 307 VEGVTHVYNYDIPQDLETYIHRTGRTGRASGSG 339 >gi|307941598|ref|ZP_07656953.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4] gi|307775206|gb|EFO34412.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4] Length = 436 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 136/382 (35%), Positives = 201/382 (52%), Gaps = 6/382 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E GY T +Q+ + L+ D+L AQTG+GKT AFGL LA LL E P Sbjct: 15 KAIEEIGYDTPTPIQKNAIPLILKGNDLLGLAQTGTGKTAAFGLPLAHRLLEEGRTPEPK 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +A AL +APTREL Q+ L KT + V +GGVS++ + + L G I+V TP Sbjct: 75 AA-RALILAPTRELVNQIASNLTSFIRKTPLRVTSVVGGVSINPQIKRLGRGTDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + K ++++ +VLDEAD+MLDLGF + I +KR+ L+FSAT+ Sbjct: 134 GRLLDLVDRKAVHLNKASYLVLDEADQMLDLGFIHALRRIAGLVAEKRQTLLFSATMPRQ 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ Y RV +A + + + + +V+++ +VFC Sbjct: 194 IEDLARTYLHKPERVEVAPAGKTAERVAQSVHFMDQKAKSGFLVDMICERADDTCLVFCR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R K L ++ G SQ +R A++ +R+G +V +ATDVAARGID+P Sbjct: 254 TKHGAERLMKRLVAAGVSAGSIHGNKSQNQRDRAIKGLREGTLKVLVATDVAARGIDIPG 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR-EANVSVV 368 + V + EL E +HR GRT RAG G ++ + + R+ E+L E V+ Sbjct: 314 VSHVYNFELPEVAEAYVHRIGRTARAGASGDAISLCSAEEVALLRQIEKLTGIEIEVASG 373 Query: 369 WEPAPSVEAIRERDAQRILQDP 390 PAP V+ +R+ QR Q P Sbjct: 374 EAPAP-VKLVRKGRNQRSGQRP 394 >gi|271969585|ref|YP_003343781.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021] gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021] Length = 697 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 123/351 (35%), Positives = 189/351 (53%), Gaps = 13/351 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL G + +QE L L +D++ A+TG+GKT AFG+A+ + Sbjct: 50 IADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAMLQRVGKPRKN-- 107 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L + PTRELAVQV +L K G + GG + + L+ G ++VG Sbjct: 108 -RKKPRGLVVVPTRELAVQVTEDLVTAAGKLGSRILTVYGGRAYEPQVEALKQGVDVIVG 166 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ K L++ + +VLDEAD MLDLGF DIE I+ P+KR+ ++FSAT+ Sbjct: 167 TPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKRQTMLFSATLP 226 Query: 191 PAITTLAKNYQKDAVRVNI------ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 I L++ Y V A Q + +RA + D+ + +L+ G Sbjct: 227 GEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRM---DKIEIVGRLLQCDGR 283 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++FC T+ + + L E F A+ G+L Q +R AL+ R+G+ V +ATDVA Sbjct: 284 GLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVATDVA 343 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ARGID+ D+ V++ + + + +HR GRTGRAG+ G++V FV +++ R Sbjct: 344 ARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTR 394 >gi|167384217|ref|XP_001736854.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760] gi|165900561|gb|EDR26857.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar SAW760] Length = 432 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 122/396 (30%), Positives = 224/396 (56%), Gaps = 17/396 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP+V+ + + GY T +QE + L++KD++ AQTGSGKT +F L + LL Sbjct: 17 IPEVL-KVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMIQHLLNVK 75 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ A + I PTRELA QV L+ + A G++ + +GG+ V ++ L Sbjct: 76 EK---NRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSVQLAKRP 132 Query: 126 HIVVGTPGRLCDHIRG-KGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 H++VGTPGR+ HI+ KG+ +I +K +V+DEAD++L++ F ++I+++++ P +R Sbjct: 133 HVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQRTT 192 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNIL 239 ++FSAT+S + L + V+ I E +++ +D + RD +++IL Sbjct: 193 MLFSATMSTKVEKLQRASLTHPVK--IKEEEQKYQTVDTLRQEYCFIPFKYRDGYLLSIL 250 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + K+ I+F + ++ +L + + + L G++SQQ+R AL+ + G+ + + Sbjct: 251 KETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGKRGILV 310 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRA 356 ATDVA+RG+D+P++++VI+ + P++ +HR GRT RAG+ G ++ ++ Q + +R Sbjct: 311 ATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIELYQRI 370 Query: 357 ERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPL 391 E + ++ N V E + + DA RI+ L Sbjct: 371 ETMIEKKLNEYKVNEKEAIAYSQKANDAMRIVSQQL 406 >gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata HTCC2501] gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata HTCC2501] Length = 422 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 119/334 (35%), Positives = 182/334 (54%), Gaps = 4/334 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + Y T +Q + L +DV+ SAQTG+GKT AF + + L E DR Sbjct: 15 ALKKENYSRPTDIQAQAIPHVLNRRDVMGSAQTGTGKTAAFAIPILQHL--ERDRRYGGK 72 Query: 74 APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + AL + PTRELA+Q+G L TG+ V GGV ++ L+ G I+V T Sbjct: 73 RGVVNALIVTPTRELAIQIGESLTAYGHYTGIRNTVIFGGVKQGKQVEALRRGVDILVAT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + +++S ++ VLDEAD MLD+GF DI I+ P +R+ L FSAT+ Sbjct: 133 PGRLLDLMDQGIISLSKVEYFVLDEADRMLDMGFIHDIRKIIARLPAERQSLFFSATMPD 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +L++ D V+V ++ + I SD+++ +++IL+ ++F Sbjct: 193 DIVSLSRKILSDPVKVAVSPVSSTAETIRQYLYYTNKSDKNDLLLHILKDPDMDQVLLFA 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ R K L + A+ G SQ +R AL +DG+ RV +ATD+AARGID+ Sbjct: 253 RTKHGADRIVKNLGKKKISAAAIHGNKSQNQRQKALGQFKDGKVRVLVATDIAARGIDID 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L V++ ++ + E +HR GR+GRAG +G+S+ Sbjct: 313 QLRYVVNFDIPNVAETYVHRIGRSGRAGEEGVSI 346 >gi|127511532|ref|YP_001092729.1| ATP-dependent RNA helicase DbpA [Shewanella loihica PV-4] gi|126636827|gb|ABO22470.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 468 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 191/342 (55%), Gaps = 9/342 (2%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F+++P + + L G+ +T +Q L L +DV+ +TGSGKT AFGL L + Sbjct: 13 FDSLPLNPALLDTLKSIGFHQMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGLLNK 72 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRD 120 L + R L + PTRELA QV EL L + + GGV + + Sbjct: 73 LDVKRFRIQ------TLVLCPTRELADQVAAELRTLARGIHNIKILTLCGGVPMGPQIGS 126 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++GAHI+VGTPGR+ DH+ L++ ++ +VLDEAD ML++GF+ +++ I+ P++R Sbjct: 127 LEHGAHIIVGTPGRIIDHLDRGRLDLDNVDTLVLDEADRMLEMGFQRELDAIMQEVPRER 186 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT I L++ + D + V + ++ S + +DR A+ +L Sbjct: 187 QTLLFSATFPEQIQGLSEQFMIDPLMVKVEVQHGGESIEQHFYECGNNNDRMKALQLLLL 246 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 H ++A+VFC+T+ L F VVAL G+L Q++R L + A V +A Sbjct: 247 KHQPESAVVFCNTKRETKDVAAKLTNAGFSVVALHGDLEQRDRDQMLLKFANKSASVMVA 306 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 TDVAARG+D+ L++V++ ++ + E +HR GRTGRAG KG Sbjct: 307 TDVAARGLDIDALDMVVNYHMAYDTEVHIHRIGRTGRAGSKG 348 >gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 447 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 127/348 (36%), Positives = 192/348 (55%), Gaps = 16/348 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-----LASTLLAEND 67 ++LS G T +QE + L KD++ S++TGSGKT+AF L +++ L++ D Sbjct: 14 QSLSHMGITTPTEIQEMAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQRIISTKALSKRD 73 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P L + PTRELA QV +L L A T +GG + + + + L H Sbjct: 74 -------PRVLILLPTRELANQVYSQLRLLVANTQYKALKILGGENFNDQAKALARDPHF 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFS 186 VV TPGRL DH+ +++ L+ ++LDEAD MLDLGF D ++ I ++ KRR LMFS Sbjct: 127 VVATPGRLADHLAQHHFHLNGLELLILDEADRMLDLGFADQLKAINAAADHKRRQTLMFS 186 Query: 187 ATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGA 244 AT++ I +A KD V + + N ++ DI + L D A++ +IL+ Sbjct: 187 ATLNHNEINEIASELLKDPKHVAVGASNIENQDITQKIYLCDHLDHKEALLQSILKRGEQ 246 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F +TR R K LAE F +LSG+L+Q R+ + G + + TDVA Sbjct: 247 KQVIIFTATRQDTDRLAKKLAEEGFNTASLSGDLNQSARNQIMDQFSRGMQDILVTTDVA 306 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 +RG+DL ++ LVI+ ++ E +HR GRT RAG KG ++ FV P++ Sbjct: 307 SRGLDLLNVSLVINFDMPKFAEEYVHRIGRTARAGAKGDAISFVGPKD 354 >gi|303242080|ref|ZP_07328571.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] gi|302590374|gb|EFL60131.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus CD2] Length = 499 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 184/338 (54%), Gaps = 6/338 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL E G+ T VQ + L +D++V ++TGSGKT FG+++ + + D Sbjct: 14 ILKALEEMGFEAPTEVQSKAIPHILNHEDLIVMSKTGSGKTAVFGVSMLQMIDPKAD--- 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L + PTRELAVQV EL+ + G S++ E + L+ G IV G Sbjct: 71 ---GPQGLILTPTRELAVQVDNELKKMAKHLDHHTTAVYGQHSMNVEIQALRRGISIVTG 127 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR DHI L +++ ++LDEAD MLD+GF D + I+ + PK R L+FSATI Sbjct: 128 TPGRAYDHIHTGNLITKNIRFLILDEADRMLDMGFLDQVVKIIRTLPKDRVTLLFSATIP 187 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I + K Y K + + I S+ + I+ + ++ + ++L ++ ++F Sbjct: 188 PEIRRICKEYMKQPLTIEIKSQTKTVDTIEQIYYRIDNQQKNTELNHLLLIERPESCMIF 247 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ +V + L+ + +L G++ Q R +Q + G + +ATDVAARGI + Sbjct: 248 CNTKIAVDKVQSFLSRKGYACQSLHGDIPQARRMKTIQQFKQGDFHLLVATDVAARGIHI 307 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +L LVI+ ++ +N +HR GRTGRAG G ++ ++ Sbjct: 308 DNLSLVINYDVPLEKDNYVHRIGRTGRAGNGGRALTLV 345 >gi|255561546|ref|XP_002521783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223538996|gb|EEF40593.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 714 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 191/357 (53%), Gaps = 20/357 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65 P+++ +A+ GY + +Q A + L+++DV+ A+TGSGKT AF L + + + L Sbjct: 303 PELL-KAVERAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPP 361 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G Sbjct: 362 MSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC 421 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------ 179 +V+ TPGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 422 EVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN 481 Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 R MFSAT+ PA+ LA+ Y ++ V VNI + + I ++V Sbjct: 482 EDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVNIGTAGKATDLISQHVIMVKE 541 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 S++ + +L G K AIVF +T+ + K L + ++V L G SQ++R +L+ Sbjct: 542 SEKFFKLQRLLDEAGDKTAIVFVNTKKNADTVAKNLDKAKYRVTTLHGGKSQEQREISLE 601 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R + V +ATDVA RGID+PD+ VI+ ++ N E HR GRTGRAG+ G++ Sbjct: 602 GFRTKKYTVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKSGVAT 658 >gi|218281439|ref|ZP_03487888.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989] gi|218217417|gb|EEC90955.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989] Length = 475 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 115/354 (32%), Positives = 198/354 (55%), Gaps = 8/354 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ Q I +AL GY VQE ++ L + D +V ++TGSGKT +F + + L E Sbjct: 7 NLDQNIIQALHTLGYEKPLPVQEQVIPNILSQTDCIVKSRTGSGKTASFAIPIIQNL--E 64 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D SP AL + PTRELA+Q+ ++ + + + G ++ DL+ Sbjct: 65 IDERSPQ----ALVLTPTRELALQIQQDFDRIGTFKKIKTLPIFGKQPFKFQKEDLKQRC 120 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+V+GTPGR+ DH++ + L+ S +K VVLDEADEML++ F D+++ IL PKK +F Sbjct: 121 HVVIGTPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKKHVTCLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I ++K Y +V++ S N+ +I A V ++ ++++L + Sbjct: 181 SATYPAVIQRMSKKYLYKPAKVDLTSTNK--PNILEEAYHVNEEHKELFLLHLLALKKPE 238 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FC T+A V L ++ V + G + Q+ER + ++ + G+ R+ + TDVA+ Sbjct: 239 SCMIFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILVCTDVAS 298 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RGID+ +E++I+ ++ S E HR GR+GR +G+++ ++ + R E+L Sbjct: 299 RGIDVFKVEMIINYDMPSPVETYTHRIGRSGRVDEQGLAISLVNEYDGVRKEKL 352 >gi|17545258|ref|NP_518660.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000] gi|17427549|emb|CAD14067.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum GMI1000] Length = 540 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 197/373 (52%), Gaps = 11/373 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71 A++E GY T +Q + L+ D+L AQTG+GKT F L L L A N +P Sbjct: 15 AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAVQPNKVQTP 74 Query: 72 ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AL + PTRELA QV + + V GGV ++ + L+ G IV Sbjct: 75 HGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N ++ R V + + ++ + + Sbjct: 195 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVSDNDWHQVL 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L +A+ G SQ R+ AL + G RV +ATD+AARGI Sbjct: 255 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL RE Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374 Query: 365 VSVV--WEPAPSV 375 +V+ +EP P++ Sbjct: 375 RTVLAGFEPDPTI 387 >gi|238008396|gb|ACR35233.1| unknown [Zea mays] Length = 618 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/353 (34%), Positives = 182/353 (51%), Gaps = 9/353 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + L ERG V T +Q L L +D++ A TGSGKT+ F L L L E Sbjct: 180 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 239 Query: 67 DRFS--PASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRER 118 P P + I P+RELA Q +E + +CIGGV + + Sbjct: 240 SLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGVDMRTQL 299 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ G HIVV TPGRL D + K +N+ + + + LDEAD ++DLGF DDI+ + D Sbjct: 300 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 359 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AKN V VN+ + D+ V R ++ Sbjct: 360 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 419 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ ++FC +A V + L + VA+ G Q+ER NA+ + GR V Sbjct: 420 LQ-KTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 478 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +ATDVA++G+D PD++ VI+ ++ + EN +HR GRTGR G+ G++ I +N Sbjct: 479 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 531 >gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36] gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36] Length = 449 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 184/338 (54%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY +++Q + L +DV+ +AQTG+GKT F L + +L++ R Sbjct: 12 ILKAVAEKGYDTPSAIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPILE-ILSQGPR-P 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ L + PTRELA Q+ +E + V GGV ++ + L+ G I+V Sbjct: 70 RANQARTLILTPTRELAAQIAENIEVYSKHLRLTSTVVFGGVKINPQMTRLRRGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLLDLYNQNAIRFHQLEILVLDEADRMLDMGFLRDIRKILAVLPQKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ D V +++ N ++ V + + ++++ + K +VF Sbjct: 190 DDIRQLARGLINDPVEISVTPRNAAAKSVEQWMHPVDKKKKALLLTHLIKENDWKQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ TK L E A+ G SQ R+ AL + G R IATD+AARGID+ Sbjct: 250 TKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKALANFKSGEVRALIATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG +G ++ ++ Sbjct: 310 VQLPQVVNFDLPNVPEDYVHRIGRTGRAGSEGTAISLV 347 >gi|89096784|ref|ZP_01169676.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. NRRL B-14911] gi|89088799|gb|EAR67908.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus sp. NRRL B-14911] Length = 480 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/378 (32%), Positives = 199/378 (52%), Gaps = 13/378 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ + I AL Y + T VQ ++ + ++D++V AQTGSGKT +FG+ + + E Sbjct: 9 HLSEEIQRALGVLKYESPTEVQSKVIPLAMEKQDLVVKAQTGSGKTASFGIPVCDMVEWE 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P AL + PTRELAVQV ++ + + G +++ +L+ Sbjct: 69 E------KSPQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFTKQKEELKQKT 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ DHI + L + ++ +++DEADEML+ GF D++E I+ P R ++F Sbjct: 123 HVVVGTPGRVMDHIDRETLVLDRIQYLIIDEADEMLNRGFIDEVEAIIKELPSDRVTMVF 182 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L Y KD V V I S I++ + V D+ + + +I Sbjct: 183 SATLPKDVEALCHEYMKDPVHVEIESTGVTAETIEHLLMEVKQEDKISLLKDITVTENPD 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++FC T+ V L + L G L Q++R ++ + G R +ATDVAA Sbjct: 243 SCLIFCRTKEHVDTVYTELDGAGYSSERLHGGLEQEDRFAVMEGFKMGNYRYLVATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RGID+ ++ LVI+ ++ E+ +HR+GRTGRAG KG ++ F P E F +A Sbjct: 303 RGIDIDNVSLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFATP------FEEKFLKAI 356 Query: 365 VSVVWEPAPSVEAIRERD 382 + P +EA ++D Sbjct: 357 ERYIGFEIPVIEAPSQQD 374 >gi|326202741|ref|ZP_08192609.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] gi|325987325|gb|EGD48153.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens DSM 2782] Length = 414 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 181/340 (53%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +AL GY T +Q+ + L KD++ AQTG+GKT AF + + L E Sbjct: 7 NLISPIQKALMAEGYTAPTDIQKQTIPLLLEGKDLVGCAQTGTGKTAAFAIPILQMLSVE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 AL + PTRELAVQ+G G+ +V GGVS + L+ G Sbjct: 67 QRDSKELRRIKALILTPTRELAVQIGESFTVYGQYLGLKNSVIFGGVSQKPQTDALEEGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D I K +N+ H+K VLDEAD MLD+G D++ I+ PK R+ ++F Sbjct: 127 DILIATPGRLLDLINQKYINLHHIKFFVLDEADRMLDMGLVADVKRIISHLPKIRQTMLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P ++ L + D V+V + + I+ V D+ + +L+ Sbjct: 187 SATMPPDVSKLIDSILTDPVKVAVTPISSTVDIIEQAVYFVGKKDKKLLLTQLLKNKSIT 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +A+VF T+ + K LA+ A+ G SQ R AL +D + RV +ATD+AA Sbjct: 247 SALVFSRTKHGADKIVKELAKVRIHAEAIHGNKSQGARQRALNNFKDKKTRVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ L VI+ +L + PE +HR GRTGRAG G+++ Sbjct: 307 RGIDVEGLSYVINYDLPNIPETYVHRIGRTGRAGLGGVAL 346 >gi|311030272|ref|ZP_07708362.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13] Length = 510 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 115/333 (34%), Positives = 188/333 (56%), Gaps = 7/333 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +L G T +QE + L DV+ AQTG+GKT+AF L + L + D + Sbjct: 13 VNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLPI----LEKVDVNN 68 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVV 129 P + AL + PTRELA Q+ +E++ L + V GG V+ + + L+ H++V Sbjct: 69 PETQ--ALILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLKGAQHVIV 126 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+R +++S + +V+DEAD+ML +GF DI+ I R+ ++FSATI Sbjct: 127 ATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQTMLFSATI 186 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LAK Y K + IA + + I++ AV ++ ++++++ H AI+ Sbjct: 187 PNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDRRKEGTMLHLIKEHNPYLAII 246 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+A V + T+VL + AL G++ Q +R+ A++ R+ + + +ATDVAARG+D Sbjct: 247 FCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLVATDVAARGLD 306 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + + V + ++ + E +HR+GRTGRA G Sbjct: 307 VEGVTHVYNYDIPQDLETYIHRTGRTGRASGSG 339 >gi|260770147|ref|ZP_05879080.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972] gi|260615485|gb|EEX40671.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972] Length = 422 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 195/380 (51%), Gaps = 11/380 (2%) Query: 7 IPQVIGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 +P I AL ER G T +Q + L KDVL AQTG+GKT AFGL L Sbjct: 9 LPLGIAPALVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRF 68 Query: 63 LAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + + P S + AL + PTRELA QV L+ + + + GG S++ ++++L Sbjct: 69 VDHPLQREPNSKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNL 128 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA I++ TPGRL DH K L + + +A+VLDEAD MLD+GF DI+ +L +R+ Sbjct: 129 RGGADILIATPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHERQ 188 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT I A ++ V V +A N ++ V + + ++ Sbjct: 189 TLFFSATFDSKIKAFAHRMMQNPVEVQVAPSNSTADTVEQMVYPVDKKRKRELLAYLIGS 248 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + +VF T+ + L + +++G+ SQ R AL + G+ R IAT Sbjct: 249 RNWQQVLVFTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIAT 308 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARGID+ LE V++ ++ E+ +HR GRTGRAG+ G +V ++ + Q E + R Sbjct: 309 DVAARGIDIAQLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLLEAIER 368 Query: 362 --EANVSVVW----EPAPSV 375 + + W EP+P V Sbjct: 369 LLDKRLPQEWLKGYEPSPVV 388 >gi|170756598|ref|YP_001781574.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str. Okra] gi|169121810|gb|ACA45646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum B1 str. Okra] Length = 376 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 116/319 (36%), Positives = 178/319 (55%), Gaps = 13/319 (4%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWL 97 DV+ AQTG+GKT+AF LL + SP +A L I PTRELA+Q+ E L Sbjct: 41 DVIAEAQTGTGKTLAF-------LLPMFENISPDINAIQGLIITPTRELAIQITEEAMKL 93 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + + GG + + + L+N H+V+ TPGRL DH+ LN LK +VLDEA Sbjct: 94 KEAKDLNILAAYGGKDIGSQIKKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEA 153 Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217 DEML +GF++D+ I++++P+KR+ L FSAT++ + LA +D + I E Sbjct: 154 DEMLLMGFKNDVRSIIENTPRKRQTLCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLK 213 Query: 218 DIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275 +I + VL+ +DR + IL AI+FC T+ V + L + + L Sbjct: 214 NI--KQVLIETTDRRKQEDLCKILDEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLH 271 Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335 G ++Q +R ++ ++ + IATDVAARG+D+ + V + ++ N E+ +HR GRT Sbjct: 272 GSITQPKRERIMRSFKNLEIQYLIATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRT 331 Query: 336 GRAGRKGMS-VFVIPQNMQ 353 GRAG KG + +FV P++ Q Sbjct: 332 GRAGEKGYTFLFVAPKDEQ 350 >gi|312069559|ref|XP_003137738.1| hypothetical protein LOAG_02152 [Loa loa] gi|307767094|gb|EFO26328.1| hypothetical protein LOAG_02152 [Loa loa] Length = 415 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/333 (33%), Positives = 184/333 (55%), Gaps = 7/333 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P +++DV+ AQ+G+GKT F +A+ + D P AL Sbjct: 61 GFEKPSAIQQRAIIPCTKKRDVIAQAQSGTGKTATFSVAVLQNI----DETIPEVQ--AL 114 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV IGG +V ++R L++G H+VVGTPGR+ D Sbjct: 115 VMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLESGVHVVVGTPGRVNDM 174 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I + L +++K VLDEADEML GF++ I + P ++++ SAT+ + + Sbjct: 175 ITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPNDVQVVLLSATMPSEVLEVTN 234 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + E I + V + + + ++ A++FC+TR V Sbjct: 235 RFMNDPIRILVKREELTLEGIRQFYINVEKEEWKFETLCDLYSTVNVTQAVIFCNTRRKV 294 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 +++ + V + GE+ Q ER ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 295 DYLATQMSKEKYTVSCMHGEMEQSERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 354 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + +L SN EN +HR GR+GR GRKG+++ I + Sbjct: 355 NYDLPSNRENYIHRIGRSGRFGRKGVAINFITE 387 >gi|167540072|ref|XP_001741531.1| ATP-dependent RNA helicase has1 [Entamoeba dispar SAW760] gi|165893947|gb|EDR22062.1| ATP-dependent RNA helicase has1, putative [Entamoeba dispar SAW760] Length = 518 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 131/394 (33%), Positives = 213/394 (54%), Gaps = 7/394 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +AL E GY +T++Q + L KD++ A+TGSGKT+AF + + L Sbjct: 63 NLSEEIQKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIVEIL--N 120 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 F + A+ I+PTRELA+Q LE + A + + IGG S +E L+ GA Sbjct: 121 KIHFQTRNGTGAIIISPTRELAIQTFEVLEKILAHSERTRTLIIGGSSKKKEEEALKKGA 180 Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVV TPGRL DHI K +LK +V+DEAD ++++GF +++ IL+ PK R+ ++ Sbjct: 181 SIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNRQTML 240 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYH 242 FSAT S + +A K V +N+ S++ S ++ VLV DR + LR + Sbjct: 241 FSATQSEKVDDIANISLKQPVVINVESQSTISTSSKLEQGYVLVEAKDRFRLLYTFLRKN 300 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K IVF S+ +V ++ +L V AL G+L Q +R+ + + I TD Sbjct: 301 KNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKEAILITTD 360 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 +AARG+D+P ++ +I +L +P++ +HR GRT RA KG ++ + R E L E Sbjct: 361 IAARGLDIPAVDWIIQVDLPDSPKDYIHRVGRTARADTKGRALLFVQPCEVRILEYLKGE 420 Query: 363 ANVSVVWE-PAPSVEAIRERDAQRILQDPLFLDS 395 +E P + I +R+ +++++ +L++ Sbjct: 421 KIPLTQYEVPEKKIANI-QRELEKLVEKNYYLNT 453 >gi|33591417|ref|NP_879061.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|33571059|emb|CAE40549.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|332380818|gb|AEE65665.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS] Length = 476 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 180/335 (53%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L+ D+L +AQTG+GKT F L + L+ Sbjct: 19 AIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPG 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTREL QV ++ + V GGV+++ + L+ I+V TPG Sbjct: 79 RPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI +L PK+R+ L+FSAT S I Sbjct: 139 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +LA+ D V++ N + LV + + + +++R G +VF T Sbjct: 199 RSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHLIRESGWHQVLVFTRT 258 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + VA+ G SQ R+ AL +DG V +ATD+AARG+D+ L Sbjct: 259 KHGANRLAEKLVKDGLSAVAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQL 318 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G +V ++ Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLV 353 >gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC 21756] Length = 475 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/333 (36%), Positives = 175/333 (52%), Gaps = 1/333 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+E+GY T +Q + L+ KD+L AQTG+GKT AF L + L AE+ + +P Sbjct: 15 KALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQRL-AEDRKPAPR 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L ++PTRELA Q+ + G+ V GGV + + L G ++V TP Sbjct: 74 RGFRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALAGGIDVLVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K +S + VLDEAD+MLDLGF I I K R+ L FSAT+ Sbjct: 134 GRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIASQLTKNRQNLFFSATMPSE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA KD V+V++A + ID R + + + + + IVF Sbjct: 194 IGKLAGELLKDPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELFADSSFSRTIVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R K L + ++ G+ +Q +R AL + G R +ATD+AARGID+ D Sbjct: 254 TKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALVATDIAARGIDVND 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ EL + PE +HR GRT R G+ G+++ Sbjct: 314 VSHVINYELPNVPEAYVHRIGRTARKGKDGIAI 346 >gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum] gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum] Length = 622 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 201/386 (52%), Gaps = 19/386 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I + L R L VQ + KD +V A+TG+GKT+AF L L + L+ Sbjct: 15 NIDDAIIKRLHARNIFELFPVQFKTYDAISSGKDAVVLARTGTGKTLAFSLPLVNQLIKR 74 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + F P+ P+ L +APTREL Q+ + E + G+ V GGV + L+NG Sbjct: 75 QESFKPS--PVVLVLAPTRELVTQIATDFESICVH-GIKVTSVYGGVPYKPQCNALRNGT 131 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-----DSSPKKR 180 H+VVG PGR+ D I L +S ++ VVLDE D MLD+GF D+E IL + + KK Sbjct: 132 HVVVGAPGRVIDLIDKGILKLSSVQHVVLDEVDRMLDMGFSKDVEKILADIYNNETSKKP 191 Query: 181 RMLMFSATISPAITTLAKNY-QKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVN 237 + L+FSAT+ ++ +++NY DA+ +++ E + +++ + A+L R + + Sbjct: 192 QTLLFSATMPSWVSDISRNYLSNDALHLSLIDEQETKASTNVTHLALLCPYESRAATLSD 251 Query: 238 ILRYHGAKN---AIVFCSTRASVSRF--TKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 +++ + IVFC + + V+ L G++ Q +R LQ RD Sbjct: 252 VIKVYCKSRESRCIVFCERKKDADELAASSVMPTDCH---VLHGDVPQDKREFVLQKFRD 308 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 G+ R + T+VAARG+D+P ++LVI + E+ +HRSGRTGRA R G S+ Sbjct: 309 GKYRTLLTTNVAARGLDVPHVDLVIQCHPPRDVEDYIHRSGRTGRADRSGTSICFYTYKE 368 Query: 353 QRRAERLFREANVSVVWEPAPSVEAI 378 + ++ A ++ AP++ I Sbjct: 369 RSMLSKIENMAGITFRRISAPTIHDI 394 >gi|225420023|ref|ZP_03762326.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme DSM 15981] gi|225041279|gb|EEG51525.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme DSM 15981] Length = 552 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 180/340 (52%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I AL Y T +QE + L +D+L AQTG+GKT AF + L E Sbjct: 7 NIMPEILRALKNENYKIPTPIQEEAIPVVLSGRDLLGCAQTGTGKTAAFAIPTLQMLSGE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 AL + PTRELA+Q+ T + V GGVS + +L+ G Sbjct: 67 ETPRWEKRTIKALVVTPTRELAIQIYDSFNTYGQFTDLKSCVVYGGVSQKPQEENLKRGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + K +NI +K +VLDEAD MLD+GF D++ I+ +P +++ L F Sbjct: 127 DILVATPGRLLDLMDQKIVNIEKIKILVLDEADRMLDMGFIHDVKKIIARTPAEKQTLFF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ P I LA K+ ++ I I+ V ++ + +++IL+ Sbjct: 187 SATMPPDIAKLAAKILKNPEKIEITPAATTVEAIEQYLYFVDKGNKKDLLLHILKTKDLD 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ R + L++ A+ G+ SQ R AL +D + RV +ATD+AA Sbjct: 247 STLVFTRTKHGADRVVRQLSKSNVVAQAIHGDKSQGARQRALNDFKDKKLRVLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L V++ +L PE +HR GRTGRAG +G+++ Sbjct: 307 RGIDIDELACVVNYDLPDVPETYVHRIGRTGRAGLEGIAI 346 >gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 465 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/339 (36%), Positives = 186/339 (54%), Gaps = 5/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G T +Q+ + L KD++ S++TGSGKT+AF L +++ R Sbjct: 33 KTLDHMGIEKPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQRIIST--RALSK 90 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV +L L A T +GG + + + + L+ H VV TP Sbjct: 91 RDPRVLILLPTRELANQVYSQLRLLVANTQYKAVKILGGENFNDQAKSLERDPHFVVATP 150 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISP 191 GRL DH+ L+++ L+ ++LDEAD MLDLGF D ++ I ++ KRR LMFSAT+ Sbjct: 151 GRLADHLAQHHLHLNGLELLILDEADRMLDLGFVDQLKAINAAADHKRRQTLMFSATLDH 210 Query: 192 -AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIV 249 I +A KD + V+I + N ++ DI R L D A++N IL+ K I+ Sbjct: 211 NKINEIAAELLKDPMHVSIGAGNIENLDITQRIYLSDHLDHKEALLNHILKNEKNKQVII 270 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +TR R LAE F +LSG+L Q R+ + G + + TDVA+RG+D Sbjct: 271 FTATRQDTDRLATKLAEAGFNTASLSGDLKQNARNQIMDQFSRGLQDILVTTDVASRGLD 330 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L ++ LVI+ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 331 LLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 369 >gi|292493472|ref|YP_003528911.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4] gi|291582067|gb|ADE16524.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus Nc4] Length = 504 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/382 (32%), Positives = 203/382 (53%), Gaps = 13/382 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ + GY T +Q + L D++ AQTG+GKT AF + + + L Sbjct: 19 ILQAIKQVGYETPTQIQARAIPHLLAGCDLMGQAQTGTGKTAAFAIPILNRLALTRKE-- 76 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIV 128 P AL + PTRELA+QV + YA+ V GG S+ + R L+ G H++ Sbjct: 77 ----PQALVLVPTRELAIQVAEAFQ-TYARYLEDFRVLPIYGGQSMGNQLRQLKRGVHVI 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+R K L + L VVLDEADEML +GF +D+E+IL P KR+ +FSAT Sbjct: 132 VGTPGRIMDHLRRKSLLLDKLTTVVLDEADEMLKMGFIEDVEWILGQMPAKRQTALFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + ++ +A + + I + I+ R LV+ + +A+ +L I Sbjct: 192 MPSSVRHIASRHLHSPHDIKIKGKTASLPAINQRYCLVSDFHKLDALTRMLEVEEYDATI 251 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + K L+ + AL+G+++Q +R + ++ + +ATDVAARG+ Sbjct: 252 IFVRTKIATEELAKKLSARGYAAAALNGDMAQAQREKVVGQLKKNTLDIIVATDVAARGL 311 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAERLFREANVSV 367 D+ + V++ ++ + +HR GRTGRAGR G ++FV P+ +RR ++ Sbjct: 312 DVKRISHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPR--ERRMLSAIKKVTGQP 369 Query: 368 VWE-PAPSVEAIRERDAQRILQ 388 ++E P PS + I +R ++ Q Sbjct: 370 LYEMPLPSHQKIIDRRIEQFKQ 391 >gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88] gi|143462251|sp|A2RB17|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3 gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger] Length = 467 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 116/346 (33%), Positives = 189/346 (54%), Gaps = 8/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + + EA GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + Sbjct: 55 IIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKP 114 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F L +APTRELA Q+ + E L A GV V +GG+ + + L H Sbjct: 115 QPF------FGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPH 168 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+ KG ++ +LK +V+DEAD +LD+ F ++ IL P++RR +F Sbjct: 169 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLF 228 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT+S + +L + + +RV++++ Q S + + + +D +V +L Sbjct: 229 SATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEFAG 288 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++ I+F T R +L F + L G+LSQ R AL R + +ATDVA Sbjct: 289 QSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILVATDVA 348 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++V++ +L + + +HR GRT RAG+ G+++ + Q Sbjct: 349 ARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQ 394 >gi|262201425|ref|YP_003272633.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262084772|gb|ACY20740.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 43247] Length = 491 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 195/381 (51%), Gaps = 6/381 (1%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M FE+ +P + + L+ G +Q+ L L KDVL +TGSGKT+AF + L Sbjct: 1 MTTFESLGVPAELVKVLAAEGKTEAFPIQQDTLGDTLEGKDVLGRGKTGSGKTLAFSIPL 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + L AE + AP L +APTRELA Q+ R +E L G+ V GGV R+ Sbjct: 61 VAGL-AEMEVPRKPGAPTGLVLAPTRELATQIARVVEPLAEAVGLRVTTVFGGVKQTRQE 119 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + + G IVV PGRL D +R + + ++ V+DEAD M DLGF + IL ++P Sbjct: 120 QAFRRGVDIVVACPGRLDDLMRQGIVTLDDVEITVIDEADHMADLGFLPVVTRILAATPA 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + ++FSAT+ + LA+ + + ++ N + + + V+ SD+ I + Sbjct: 180 DGQRMLFSATLDNGVDKLARRFLDNPTMHSVDEANSPVAAMTHHVFEVSPSDKAALITEL 239 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 GA I+F T+ + + L E V L G LSQ +R L G RV Sbjct: 240 --ASGAGRRILFMRTKHQAKKLARKLTEDGIPAVDLHGNLSQAQRDRNLGAFGAGDVRVL 297 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARG+ + D+ELV+H + + + LHRSGRT RAG G V V + +R Sbjct: 298 VATDVAARGVHVDDIELVVHVDPPNEHKAYLHRSGRTARAGSAGDVVTVCLPDQRRDVAS 357 Query: 359 LFREANVSVVWEP-APSVEAI 378 L R+A +SV P P +A+ Sbjct: 358 LLRKAKISVAPMPVTPRSDAV 378 >gi|306840535|ref|ZP_07473294.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2] gi|306289550|gb|EFM60768.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2] Length = 549 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 197/375 (52%), Gaps = 9/375 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I V+ + + G +Q + L D+L AQTGSGKT AF L + ++ Sbjct: 108 ITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGHDILGIAQTGSGKTAAFSLPILQKIIGLG 167 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 D+ P +A AL +APTRELAVQ+ + + + + A+ +GGVS + + + G Sbjct: 168 DKRRPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGID 226 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL D +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FS Sbjct: 227 VLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFS 286 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I +LA+ +D VRV +A + S+I V ++ + +L ++ Sbjct: 287 ATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRS 346 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + L + V A+ G SQ R AL RDG R+ +ATD+AAR Sbjct: 347 VIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAAR 406 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE 362 GID+P + V++ +L PE +HR GRTGR G G S+ + ++ R ER+ R Sbjct: 407 GIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRS 466 Query: 363 ----ANVSVVWEPAP 373 + V PAP Sbjct: 467 KLSIKDAPVKLAPAP 481 >gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] Length = 438 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 191/341 (56%), Gaps = 10/341 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 + +Q + L+ KDV+ A+TGSGKT AF L + LL R+ A+ + PT Sbjct: 20 SKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLENPQRY------FAVILTPT 73 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142 RELA Q+ + E L A GV V +GG+ + + L HI++ TPGRL DH+ K Sbjct: 74 RELAYQISEQFEALGASIGVKCCVIVGGMDMVSQALQLARKPHIIIATPGRLVDHLENTK 133 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G N+ +K +V+DEAD +L+L F +++ IL P++RR +FSAT++ + L + K Sbjct: 134 GFNLKAVKYLVMDEADRILNLDFEVELDKILKVLPRERRTFLFSATMTKKVKKLERASLK 193 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 D V+V ++S+ + + V + +D +V+IL + ++FCST + R Sbjct: 194 DPVKVEVSSKYQTVEKLLQYYVFIPAKFKDVYLVHILNELAGNSFMIFCSTCNNTVRTAL 253 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 +L V L G++SQ +R +L + ++ I+TDVA+RG+D+P +++V++ ++ Sbjct: 254 MLRALGLAAVPLHGQMSQNKRLASLNKFKGKDRQILISTDVASRGLDIPHVDVVLNFDIP 313 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 ++ ++ +HR GRT RAGR G +V + Q + +R E L Sbjct: 314 THSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHLL 354 >gi|88704045|ref|ZP_01101760.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71] gi|88701872|gb|EAQ98976.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71] Length = 427 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 185/339 (54%), Gaps = 8/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRF 69 ++E G+ + +Q IL L+ D + AQTG+GKT AF + + LL E +RF Sbjct: 57 HGIAEIGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFDDLLKHPHEGERF 116 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIV 128 P AL IAPTREL +Q+ + E L TG+ IGG+ ++ L + +V Sbjct: 117 --LGEPRALVIAPTRELVMQIAADAEDLGKHTGLNTCTLIGGMDYQKQLNQLGREVVDLV 174 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFS 186 V TPGRL D + L + ++ +VLDEAD MLD+GF ++ I+ +P K R+ L+FS Sbjct: 175 VATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHKDYRQTLLFS 234 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT + I L++ + DA+ + I ++ +D R L + +R +VN+LR A + Sbjct: 235 ATFTQDIINLSQQWTTDAITIEIEPDHVATDSVDQRIYLASSEERFRILVNLLRSDDASS 294 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF + R V R + L + LSGE++Q +R+ L + G V +ATDVA R Sbjct: 295 VIVFANRRDQVRRLFERLRKASITCGMLSGEIAQAKRTKTLDQFKKGEISVLVATDVAGR 354 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 GI + + V++ L +PE+ +HR GRTGRAG G S+ Sbjct: 355 GIHVDGVTHVVNYNLPEDPEDYVHRIGRTGRAGASGTSI 393 >gi|91205891|ref|YP_538246.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C] gi|157826748|ref|YP_001495812.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389] gi|91069435|gb|ABE05157.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C] gi|157802052|gb|ABV78775.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389] Length = 411 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 119/366 (32%), Positives = 194/366 (53%), Gaps = 33/366 (9%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+P+ + L T +Q+ + + D+L S+QTGSGKT+A+ L + + Sbjct: 1 MKNF-NLPEELTTTLEAMKITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPVIN 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + L + PTRELA Q+ L + + AV IGG + ++ Sbjct: 60 AFIKDKT--------TTLILVPTRELATQICSTLNKVTTSFKINNAVLIGGEPMPKQFTQ 111 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P+KR Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-----------LS 229 ++LMFSAT+ I +L++ Y + VR+ + + N+ ++I +V + L Sbjct: 172 QVLMFSATMPKHIISLSQKYLNNPVRITVGATNKAAAEIKQESVHITDKEKFTELNKQLG 231 Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 DR+ ++ I+F T+ S + K+L + A+ G+LSQ++R + Sbjct: 232 DREGSV------------IIFVKTKRSADQLAKMLRYENHKAEAIHGDLSQRQRDRVILS 279 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348 R R+ +ATDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG KG ++ F+ Sbjct: 280 FRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAKGNALSFIS 339 Query: 349 PQNMQR 354 P ++ R Sbjct: 340 PDDVIR 345 >gi|260776311|ref|ZP_05885206.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC BAA-450] gi|260607534|gb|EEX33799.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC BAA-450] Length = 483 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 184/337 (54%), Gaps = 4/337 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ ++GY + +QE + L KDV+ +AQTG+GKT F L + L +N Sbjct: 14 KAIDDQGYDKPSPIQEQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILERL--DNGTRVKG 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNGAHIVVGT 131 + AL + PTRELA QV +E + Y++ + + V GGV ++ + L+ G ++V T Sbjct: 72 NHVRALVLTPTRELAAQV-QENVFKYSRYQRLTSNVVFGGVKINPQMTKLRKGTDVLVAT 130 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + +N S L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 131 PGRLLDLYQQNAINFSQLEVLVLDEADRMLDMGFIRDIRKILALLPEKRQNLLFSATFSA 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LAK D V V++ EN I+ + +V +++ + +VF Sbjct: 191 EIRELAKGLVNDPVEVSVNPENSTAVTIEQSIYPADKRKKAPMLVKLIKDGDWRQVLVFS 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + + G SQ R+ AL + G RV +ATD+AARGID+P Sbjct: 251 RTKHGANRLSHYLNDQGITAAPIHGNKSQGARTKALADFKSGEVRVLVATDIAARGIDIP 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 311 QLPQVVNFELPHVAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|254452993|ref|ZP_05066430.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238] gi|198267399|gb|EDY91669.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238] Length = 439 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 193/346 (55%), Gaps = 3/346 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I E L +G V+ T +Q + + +DV+ A+TGSGKT AFGL + LL E Sbjct: 6 PRLIAE-LKSQGIVDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLLKEQG 64 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + +A AL +APTRELA Q+ LE T + + +GG + + R L+ G + Sbjct: 65 KPEGKTA-RALILAPTRELAKQIQENLEAYTKGTHLKTMLVVGGAGITGQIRKLERGVDL 123 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + + + + K +VLDEAD+MLD+GF + I +R+ ++FSA Sbjct: 124 LVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTMLFSA 183 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ + LA + K+ +RV + + + I+ VA + + + ++ ++ H + A Sbjct: 184 TMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELIDKHRDERA 243 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF T+ + K+LA F ++ G SQ +R A+ + G+ + +ATDVAARG Sbjct: 244 IVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVTILVATDVAARG 303 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +D+P+++ V + +L + EN +HR GRT RAG GM++ F P M Sbjct: 304 LDIPEVKHVYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEM 349 >gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria MEX-5] Length = 480 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 198/371 (53%), Gaps = 7/371 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + L A Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGA 73 Query: 73 S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGVS++ + L+ G IVV T Sbjct: 74 KRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++S+L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT S Sbjct: 134 PGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +LA + + +A N + + V + + +++R H +VF Sbjct: 194 EIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDID 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE V Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEV 373 Query: 368 V--WEPAPSVE 376 + +EP PS + Sbjct: 374 IAGFEPDPSAK 384 >gi|167624613|ref|YP_001674907.1| DEAD/DEAH box helicase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354635|gb|ABZ77248.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 458 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 188/345 (54%), Gaps = 5/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + ++L G T +QE + L KD++ S++TGSGKT+AF L L++ Sbjct: 18 LDQRLLQSLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAMQRLISC- 76 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P + + PTRELA QV +L L A T +GG + + + + L H Sbjct: 77 -KALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKALARDPH 135 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMF 185 VV TPGRL DH++ L+++ L+ ++LDEAD MLDLGF + ++ I +++ KRR LMF Sbjct: 136 FVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKLINNAADHKRRQTLMF 195 Query: 186 SATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHG 243 SAT+ + +A K V I + N +H DI R L D AI+ IL+ Sbjct: 196 SATLDHGDVNDIANELLKFPEHVAIGASNLEHKDITQRIFLCDHLDHKEAILTRILKEEQ 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K I+F +TR R LA F+ +LSGEL Q R+ + G ++ + TDV Sbjct: 256 QKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQILVTTDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+RG+DL ++ LVI+ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 316 ASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 360 >gi|226506900|ref|NP_001142117.1| hypothetical protein LOC100274281 [Zea mays] gi|194704910|gb|ACF86539.1| unknown [Zea mays] gi|194707190|gb|ACF87679.1| unknown [Zea mays] Length = 494 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 192/357 (53%), Gaps = 5/357 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 P+ + + +++ G+V T +Q LR +D++ A+TGSGKT+A+ L A + Sbjct: 97 GFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAY-LLPAIVHVNA 155 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 SP P+ L +APTRELAVQ+ +E A + + GGV + RDLQ G Sbjct: 156 QPILSPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGV 215 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL D I N+ + +VLDEAD MLD+GF I+ I+ R+ L + Sbjct: 216 EIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYW 275 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILR-YH 242 SAT + LA+N+ D +V I SE+ + H+ + + +L + S + N +VN+L Sbjct: 276 SATWPKEVEQLARNFLFDPYKVTIGSEDLKANHAIVQHVEIL-SESQKYNKLVNLLEDIM 334 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++F T+ + T+ L + +++ G+ SQ ER L + G++ + ATD Sbjct: 335 DGSRILIFMDTKKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATD 394 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 VAARG+D+ D++ VI+ + + E+ +HR GRTGRAG KG + R A+ L Sbjct: 395 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 451 >gi|300722435|ref|YP_003711723.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Xenorhabdus nematophila ATCC 19061] gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Xenorhabdus nematophila ATCC 19061] Length = 498 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/370 (33%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q+ + L KD+L SAQTG+GKT F L + L + Sbjct: 15 AVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQRLSESPTQVKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG + + V GGVS++ + L+ G I+V TPG Sbjct: 75 PVRALILTPTRELAAQVGENVHNYSKYLKLRSFVVFGGVSINPQMMKLRGGVDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D +++SH++ ++LDEAD MLD+GF DI IL+ P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRILNKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D V V +A N I V + + ++ + +VF T Sbjct: 195 KNLANKLLNDPVSVEVARRNSASEQIAQSIHFVDKKRKGELLSYMIGSQNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + ++ ++L + A+ G SQ R+ AL + G+ R +ATD+AARG+D+ L Sbjct: 255 KHGANKLAELLNKDGVTAAAIHGNKSQGARTRALADFKSGQIRALVATDIAARGLDIDQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368 V++ EL + E+ +HR GRTGRA G ++ ++ + + ERL + + Sbjct: 315 PHVVNYELPNVAEDYVHRIGRTGRADATGQAISLVCVDEHKLLKDIERLLKREIPRIAIQ 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|167375363|ref|XP_001733609.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760] gi|165905196|gb|EDR30262.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar SAW760] Length = 432 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/396 (30%), Positives = 224/396 (56%), Gaps = 17/396 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP+V+ + + GY T +QE + L++KD++ AQTGSGKT +F L + LL Sbjct: 17 IPEVL-KVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMIQHLLNVK 75 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ A + I PTRELA QV L+ + A G++ + +GG+ V ++ L Sbjct: 76 EK---NRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSIQLAKRP 132 Query: 126 HIVVGTPGRLCDHIRG-KGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 H++VGTPGR+ HI+ KG+ +I +K +V+DEAD++L++ F ++I+++++ P +R Sbjct: 133 HVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQRTT 192 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNIL 239 ++FSAT+S + L + V+ I E +++ +D + RD +++IL Sbjct: 193 MLFSATMSTKVEKLQRASLTHPVK--IKEEEQKYQTVDTLRQEYCFIPFKYRDGYLLSIL 250 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + K+ I+F + ++ +L + + + L G++SQQ+R AL+ + G+ + + Sbjct: 251 KETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGKRGILV 310 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRA 356 ATDVA+RG+D+P++++VI+ + P++ +HR GRT RAG+ G ++ ++ Q + +R Sbjct: 311 ATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIELYQRI 370 Query: 357 ERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPL 391 E + ++ N V E + + DA RI+ L Sbjct: 371 ETMIEKKLNEYKVNEKEAIAYSQKANDAMRIVSQQL 406 >gi|59713557|ref|YP_206332.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] gi|59481805|gb|AAW87444.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] Length = 434 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 176/333 (52%), Gaps = 1/333 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72 ++E G+ T +QE + L+ DVL AQTG+GKT AFGL L L+ +R + Sbjct: 31 TVAELGFKEATPIQEQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLIQRLIESPIERHEES 90 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QV L T + V V GG S++ ++ +L GA I++ TP Sbjct: 91 KVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQKENLLGGADILIATP 150 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K + ++ + +VLDEAD MLD+GF DI+ IL P +R+ L FSAT S Sbjct: 151 GRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPDERQTLFFSATFSKK 210 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + +A V + N ++ V + + ++ + +VF Sbjct: 211 VREIAYYMLNKPKEVQVTPTNSTAETVEQMVYPVDKHRKSELLAYLIGSRNWQQVLVFTK 270 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ K L + + +++G+ SQ R AL+ + G+ R IATDVAARG+D+ Sbjct: 271 TKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKVRALIATDVAARGLDIEQ 330 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LE VI+ EL E+ +HR GRTGRAG G ++ Sbjct: 331 LECVINYELPFKAEDYVHRIGRTGRAGHTGKAI 363 >gi|2500520|sp|Q40467|IF414_TOBAC RecName: Full=Eukaryotic initiation factor 4A-14; Short=eIF-4A-14; AltName: Full=ATP-dependent RNA helicase eIF4A-14 gi|485943|emb|CAA55742.1| unnamed protein product [Nicotiana tabacum] Length = 413 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 193/355 (54%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D +S AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YSLVECQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ+G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L H+K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + ++ I V V + + + ++ +++F +TR V Sbjct: 233 KFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV + PA Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPA 407 >gi|299067900|emb|CBJ39113.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CMR15] Length = 548 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 197/373 (52%), Gaps = 11/373 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71 A++E GY T +Q + L+ D+L AQTG+GKT F L L L A N +P Sbjct: 15 AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAVQPNKVQTP 74 Query: 72 ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P+ AL + PTRELA QV + + V GGV ++ + L+ G IV Sbjct: 75 NGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH+ + +++SH++ +VLDEAD MLD+GF DI IL+ P KR+ L+FSAT Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LA + +A N ++ R V + + ++ + + Sbjct: 195 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVSDNDWHQVL 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ +R + L +A+ G SQ R+ AL + G RV +ATD+AARGI Sbjct: 255 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364 D+ L V++ +L + PE+ +HR GRTGRAG +G ++ ++ + R ERL RE Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374 Query: 365 VSVV--WEPAPSV 375 +V+ +EP P++ Sbjct: 375 RTVLSGFEPDPTI 387 >gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata] Length = 502 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 186/340 (54%), Gaps = 7/340 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---P 75 GY T +Q+ + L +D++ AQTGSGKT AF L + + ++ E SP S P Sbjct: 76 GYTKPTPIQKHAIPSILAGRDLMGCAQTGSGKTAAFILPVLTAMVKEGLTCSPMSEFQEP 135 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 + +APTRELA Q+ E +T V V GGVSV + R +++GA++VVGTPGRL Sbjct: 136 QTIVVAPTRELASQIYTEARKFALRTDVRPVVVYGGVSVAHQLRQVESGANLVVGTPGRL 195 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISP 191 D I +++ +K ++LDEAD MLD+GF I +++S S +R+ LMFSAT Sbjct: 196 LDFIERGKISVKKVKFLILDEADRMLDMGFEPSIRKLVESLGMPSKSERQTLMFSATFKA 255 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA ++ D + + + SD++ + V + + +IL G +VF Sbjct: 256 EIQQLAADFMNDYLFITVGIVGGACSDVEQTFLEVDRLQKREYLCDILNSSGTNRVLVFV 315 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + + L++ + ++ G+ Q+ER AL + G++ V IAT+VAARG+D+P Sbjct: 316 GQKRNADFLASFLSQSGYPTTSIHGDRLQREREEALMDFKRGKSPVLIATNVAARGLDIP 375 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 D+ V++ +L ++ + +HR GRTGR G G + Q+ Sbjct: 376 DVTHVVNYDLPTDIDEYVHRIGRTGRCGNLGKATSFYSQD 415 >gi|224094640|ref|XP_002195464.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Taeniopygia guttata] Length = 451 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 191/346 (55%), Gaps = 8/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ +A + G+ T +Q + L+ +DV+ A+TGSGKT AF L + LL Sbjct: 31 VTDVLCKACDQLGWKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQALLETP 90 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGA 125 R AL + PTRELA Q+ + E L + GV AV +GG+ + L Sbjct: 91 QRL------FALVLTPTRELAFQISEQFEALGSSIGVQTSAVIVGGIDTMSQSLALAKKP 144 Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 H+++ TPGRL DH+ KG N+ LK +V+DEAD +L++ F +++ IL P+ R+ + Sbjct: 145 HVIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFL 204 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ + L + K+ V+ ++S+ + + + + +D+ +V IL Sbjct: 205 FSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAG 264 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + ++FCST + R +L F + L G++SQ +R +L + + +ATDVA Sbjct: 265 NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVA 324 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+ + Q Sbjct: 325 SRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 370 >gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium] Length = 446 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 183/338 (54%), Gaps = 6/338 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ GY + +Q + L +DV+ +AQTG+GKT F L L L + PA Sbjct: 23 KAVADEGYTAPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLHGL----SKGQPA 78 Query: 73 SAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV ++ + AV GGV ++ + L+ G I++ Sbjct: 79 KANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRKGVDILIA 138 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ L+ ++LDEAD MLD+GF DI I+ + PKKR+ LMFSAT S Sbjct: 139 TPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPKKRQNLMFSATFS 198 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + V + + + +V ++ H + +VF Sbjct: 199 EDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQVLVF 258 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + Q A+ G SQ R+ AL + G+ RV +ATD+AARG+D+ Sbjct: 259 SRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAARGLDI 318 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L ++ +HR GRTGRAG G ++ ++ Sbjct: 319 EQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLV 356 >gi|117164725|emb|CAJ88273.1| putative DEAD/DEAH box helicase [Streptomyces ambofaciens ATCC 23877] Length = 472 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/372 (34%), Positives = 202/372 (54%), Gaps = 7/372 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +A++ G +Q A L L +DVL A+TGSGKT+AFGLAL L Sbjct: 46 GLPPALLKAMTGLGVTRPFPIQAATLPDALAGRDVLGRARTGSGKTLAFGLAL---LART 102 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124 R + A PLAL + TRELA QV L YA+T + +A +GG+S++R+ L+NG Sbjct: 103 AGRRADAKRPLALVLVSTRELAQQVSEALAP-YARTMDLRLATVVGGLSINRQAEQLRNG 161 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VV TPGRL D + + ++ ++ VLDEAD+M D+GF + ILD P + L+ Sbjct: 162 AEVVVATPGRLADLVSRRDCHLDRVRITVLDEADQMCDMGFLPQVTGILDQVPGDGQRLL 221 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ + L +++ D V ++ + + +++ + V +D+ I G Sbjct: 222 FSATLDGDVDQLVRSHLHDPVLASVDPVSGSVATMEHHVLTVHPADKHAVATEIAARDG- 280 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++F T+A V RF + L + AL SQ +R++ L DG V +AT+VA Sbjct: 281 -RVLMFLDTKAGVDRFLRHLRAGGVRAAALHSGKSQPQRTHTLAQFVDGGVTVLVATNVA 339 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGI + L+LV++ + ++ ++ LHR GRT RAG+ G V ++ + +R R+ EA Sbjct: 340 ARGIHVDALDLVVNVDPPADAKDYLHRGGRTARAGQSGRVVTLVTPDQRRDVNRMMSEAG 399 Query: 365 VSVVWEPAPSVE 376 + P S E Sbjct: 400 IRPTITPVRSGE 411 >gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp. PRwf-1] gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1] Length = 516 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 115/345 (33%), Positives = 193/345 (55%), Gaps = 7/345 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E P+++ EAL+ GY + T +Q + P L +D+L+SAQTGSGKT AF L + ++ Sbjct: 45 LELAPELL-EALTSSGYKHPTPIQALSIPPALAGRDLLLSAQTGSGKTAAFVLPMLDKII 103 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQ 122 + + + + PTRELA QV + +KT + +V +GG + R L Sbjct: 104 RDK---ATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALN 160 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +++ TPGR DH+ +++S L ++LDEAD MLD+GF +DIE ++ ++PK R+ Sbjct: 161 KGVQVIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFAEDIEKVMKAAPKNRQT 220 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +M SAT + +A ++ + R++I +E + + Y A + ++ + N+L Sbjct: 221 IMCSATWDGPVGKIAASFTNNPERIDIKAETKHIDESVYYA--DDFNHKNRILDNLLTQK 278 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 AI+F +T+ S K L E + L G+L Q +RS + ++ G+ + +ATD Sbjct: 279 DVNQAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRSRIINDVKAGKITILVATD 338 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 VAARGID+ + V + +L E+ +HR GR+GRAGR G+++ + Sbjct: 339 VAARGIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINI 383 >gi|82569452|gb|ABB83368.1| VASA-like protein [Pleurodeles waltl] Length = 463 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/364 (34%), Positives = 197/364 (54%), Gaps = 13/364 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + +S+ GYV LT VQ+ + L ++D++ AQTGSGKT AF L + + ++ Sbjct: 36 NLPETLNRNISKAGYVKLTPVQKYSIPIVLAKRDLMACAQTGSGKTAAFLLPILAHMM-- 93 Query: 66 NDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 D +P S P A+ +APTREL Q+ + T + V GG R + Sbjct: 94 RDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHSLRQI 153 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SP 177 G +I+ TPGRL D I+ + + ++ L+ +VLDEAD MLD+GF D++ +++S S Sbjct: 154 YQGCNILCATPGRLIDIIKREKIGLTKLRYLVLDEADRMLDMGFGPDMKVLVNSPGMPSK 213 Query: 178 KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 + R+ LMFSAT I +LAK + K D + V + SD++ + V + + +V Sbjct: 214 EDRQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKDKLV 273 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 IL+ G + +VF T+ T +L + ++ G+ Q+ER AL R G+ Sbjct: 274 EILQGLGIERTMVFVKTKKRADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCN 333 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQR 354 V +AT+VAARG+D+ +++ VI +LS N E +HR GRTGR G K ++ F N R Sbjct: 334 VLVATNVAARGLDIENVQHVIIYDLSDNIEEYVHRIGRTGRCGNVGKAITFFDTDDNEDR 393 Query: 355 RAER 358 R Sbjct: 394 TVAR 397 >gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17] gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17] Length = 444 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 180/335 (53%), Gaps = 3/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A ++GY + +Q + L KDV+ +AQTG+GKT F L + +L +N R Sbjct: 15 ATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPILQ-MLEQNPRT--GK 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + AV GGV ++ + L+ G ++V TPG Sbjct: 72 GPRVLILTPTRELAAQVHDSVNLYSRYVPTRAAVVFGGVKINPQMMKLRKGLDVLVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + + ++ +VLDEAD MLD+GF DI IL P KR+ L+FSAT S I Sbjct: 132 RLMDLYQQNAVRFNEVEFLVLDEADRMLDMGFIRDIRKILAMLPAKRQSLLFSATFSNEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLAK D V++++A N + V S + + ++R + + +VF T Sbjct: 192 RTLAKGLLNDPVQIDVAVRNTTAESVIQSVYPVDQSQKTALLSKLVRDNSWEQVLVFTRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R T+ L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ L Sbjct: 252 KHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVLVATDIAARGLDIKQL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G ++ ++ Sbjct: 312 PQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLV 346 >gi|114561793|ref|YP_749306.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333086|gb|ABI70468.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 421 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 178/342 (52%), Gaps = 8/342 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-- 72 L+E Y T +Q + L KDV+ AQTG+GKT AF L L LL D + Sbjct: 16 LAELKYQQPTPIQLQAIPVILSGKDVMAGAQTGTGKTAAFALPLLHQLLTHQDNLAAQPD 75 Query: 73 -----SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 S P+ AL + PTRELA QV +E + V + GGVS+ + R L NG H Sbjct: 76 TQHINSTPITALVLVPTRELAQQVHSSIEQYAYGSSVTSVMVYGGVSIGEQIRQLANGTH 135 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL D +R + L++S L +V DEAD MLD+GF+D+I +L P R+ L+FS Sbjct: 136 ILVATPGRLLDLLRKRALSLSQLTHLVFDEADRMLDMGFKDEIVEVLKRLPSTRQTLLFS 195 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + + ++ + + +A N S I R V + + + +++ Sbjct: 196 ATLDDRMLSFSRRLLRSPQVIEVAQRNTTASSIVERVFNVDANRKCAMLCHLITQESWLQ 255 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +++F T+ K + + A +LSQ R L + G +ATDVAAR Sbjct: 256 SLIFSRTKQGADALVKQMKQAGVAAEAFHADLSQAVREQVLAAFKAGEVTALVATDVAAR 315 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ +L V++ EL E+ +HR GRTGRAG+ G ++ ++ Sbjct: 316 GLDINELNYVVNMELPFQVEDYVHRIGRTGRAGKAGQAITLL 357 >gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans JEC21] gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var. neoformans B-3501A] gi|74683279|sp|Q5KBE2|RRP3_CRYNE RecName: Full=ATP-dependent rRNA helicase RRP3 gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 484 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 189/338 (55%), Gaps = 7/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A + G+ + +Q + L KD++ AQTGSGKT AF L + TL F Sbjct: 52 ACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPF---- 107 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA Q+ +++ L + GV AV +GG+ + + L HI+V TPG Sbjct: 108 --FALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPG 165 Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 RL DH+ KG ++ LK +V+DEAD +LDL F I+ IL PK+R +FSAT++ Sbjct: 166 RLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKERNTYLFSATMTTK 225 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L + VRV ++S+ S + +L+ L ++D ++ + + + ++F Sbjct: 226 VAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELSSSSMMIFTR 285 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T A R + +L F + L G+++Q R +L + G + +ATDVA+RG+D+P Sbjct: 286 TVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPL 345 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ++LVI+ ++ +N ++ +HR GRT RAGR G S+ ++ Q Sbjct: 346 VDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQ 383 >gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2143] Length = 431 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 187/338 (55%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++++GY + +Q + + KDV+ +AQTG+GKT F L + L+ + + Sbjct: 12 ILDAVADQGYDTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPILELLIP--GKLA 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ L + PTRELA QVG + + AV GGV ++ + L+ G ++V Sbjct: 70 QANQARVLILTPTRELAAQVGESVATYGKNLPLRSAVVFGGVKINPQMMKLRQGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + HL+ +VLDEAD MLD+GF DI+ IL PKKR+ L+FSAT S Sbjct: 130 TPGRLLDLYNQRAVKFDHLEVLVLDEADRMLDMGFIHDIKKILAVLPKKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N + + V + + ++++++ + +VF Sbjct: 190 NDIRGLAKGLVNNPVEISVSPANTTVESVQHWIYPVDKNQKSKLLIHLIQDNQWSQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ K L A+ G SQ R+ AL + G+ +V +ATD+AARG+D+ Sbjct: 250 SRTKHGANKLAKQLDGAGINAAAIHGNKSQGARTKALADFKGGKVQVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G +V ++ Sbjct: 310 EQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 347 >gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. KMS] gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS] Length = 507 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 187/345 (54%), Gaps = 8/345 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+E G ++QE L L D++ A+TG GKT AFG+ L + + ++ Sbjct: 21 ICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQRVTTDTEK-E 79 Query: 71 PASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 + P AL + PTREL +QV +L ++L A + V I GG + L+ GA Sbjct: 80 LSGIPRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYEPQIESLRKGA 139 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D + L + L +VLDEADEMLDLGF DIE IL +P R+ ++F Sbjct: 140 DVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQTPDTRQAMLF 199 Query: 186 SATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 SAT+ I TLA+ + Q +R + H A D+ + IL+ G Sbjct: 200 SATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDKVEMVSRILQAEG 259 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F T+ + + LAE F+V A+ G+L Q R AL+ R G V +ATDV Sbjct: 260 RGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTGEVDVLVATDV 319 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ D+ VI+ ++ + + +HR GRTGRAG+ G++V ++ Sbjct: 320 AARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLV 364 >gi|311694990|gb|ADP97863.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15] Length = 427 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 195/347 (56%), Gaps = 9/347 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----ALAST 61 N+ + + +A++ G+ T +Q L L +D++ AQTG+GKT AF + +L T Sbjct: 17 NLDKRLLDAITAIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSLLET 76 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + E +RF AS P LA+APTRELA+Q+ ++ E L TG V +GG++ ++R L Sbjct: 77 PIPEKERF--ASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVGGMNYDKQRDQL 134 Query: 122 QNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKK 179 QN I+V TPGRL D + + + + L ++LDEAD MLD+GF D++ I+ +PK+ Sbjct: 135 QNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTPKE 194 Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ L+FSAT + + LA + +A V I E + ++ LV ++ +VN Sbjct: 195 ERQTLLFSATFNQDVLNLASMWTSNAEFVEIEPEQKTAERVEQTVYLVGDDEKLPVLVNF 254 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ + A+VF + R + L +V +SGE++Q +R L + G +V Sbjct: 255 LKRPEVEKALVFANRRDQCRDLEEDLRNQGVKVALMSGEIAQNKRLKTLDQFKKGSIQVL 314 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVA RGI + + V + L N E+ +HR GRTGRAG+ G+S+ Sbjct: 315 VATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSI 361 >gi|330822482|ref|XP_003291680.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum] gi|325078116|gb|EGC31785.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum] Length = 397 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/328 (33%), Positives = 185/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +D + AQ+G+GKT F + A + N R +P AL Sbjct: 42 GFEKPSAIQQRAIVPIIKGRDTIAQAQSGTGKTATFSIG-ALQCIDVNVR-----SPQAL 95 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V V C+GG ++ + + L+ G HIV GTPGR+ D Sbjct: 96 ILSPTRELAQQIQKVALALSEYMNVQVHACVGGKNMSDDIKKLETGVHIVSGTPGRVLDM 155 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I K L+ H+K ++LDEADEML LGF+ I + P+ ++++ SAT++ + T+ + Sbjct: 156 ITRKSLSTRHIKMMILDEADEMLSLGFQQQINDVYRYLPEATQIVLVSATLTQDVVTMTE 215 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + +I A++FC+T+ V Sbjct: 216 KFMSKPVRILLKRDELTLDGIKQFFVSVEKEEWKFGTLCDIYDSLTITQAVIFCNTKKKV 275 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + T+ + E F V ++ G++ Q+ER ++ R G RV I TD+ ARGID+ + LVI Sbjct: 276 DQLTEKMREANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVI 335 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L + EN LHR GR+GR GRKG+++ Sbjct: 336 NYDLPIDRENYLHRIGRSGRFGRKGVAI 363 >gi|325675810|ref|ZP_08155494.1| ATP-dependent RNA helicase RhlE [Rhodococcus equi ATCC 33707] gi|325553781|gb|EGD23459.1| ATP-dependent RNA helicase RhlE [Rhodococcus equi ATCC 33707] Length = 500 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 136/396 (34%), Positives = 202/396 (51%), Gaps = 21/396 (5%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE+ +P I AL++ G +Q L L +DVL +TGSGKT+AF + LA+ Sbjct: 27 FESLGVPAPIVSALADGGITAPFPIQVDTLPDTLAGRDVLGRGKTGSGKTLAFSIPLAAR 86 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L R P L +APTRELA Q+ LE L G+ V GGVS HR+ + L Sbjct: 87 LAGGKRR---PGKPRGLVLAPTRELATQITATLEPLAGALGLRVTTIFGGVSQHRQVKAL 143 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 ++G IVV PGRL D ++ + + + ++ +LDEAD M DLGF + IL ++P + Sbjct: 144 ESGVDIVVACPGRLEDLMKQRFVTLDAVEMTILDEADHMADLGFLPGVTRILTATPSGGQ 203 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L+FSAT+ + L K + ++ V ++ N + + + VA + A+V+ L Sbjct: 204 RLLFSATLDNGVDKLVKRFLQNEVLHSVDEANSPVAAMTHHVYDVAGVEAKKALVHKL-A 262 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G I+F T+ + + L E V L G LSQ R L +G ARV +AT Sbjct: 263 SGQGRRILFMRTKHQARKLARQLTESGIPSVDLHGNLSQNARDRNLAAFSEGTARVLVAT 322 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 DVAARG+ + ++ELV+H + + + LHRSGRT RAG G V ++ ++ L R Sbjct: 323 DVAARGVHVDEVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTIVLPEQRKDLSALMR 382 Query: 362 EAN---------------VSVVWEPAPSVEAIRERD 382 +A+ V++V EPAP V + D Sbjct: 383 KASIKVTPVQVTADSEHVVTLVGEPAPHVAPAPKTD 418 >gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Acyrthosiphon pisum] Length = 450 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 109/358 (30%), Positives = 200/358 (55%), Gaps = 10/358 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + V+ E + T +Q+ + L+ KD++ A+TGSGKT AF + + LL Sbjct: 26 VTDVLCETCETLKWKTPTKIQKEAIPVALQGKDIIGLAETGSGKTGAFAIPILQALLENP 85 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ AL + PTRELA Q+ ++E L + GV AV +GG+ + + L H Sbjct: 86 QRY------FALILTPTRELAFQISEQIEALGSSIGVKCAVIVGGMDMMAQSLMLAKKPH 139 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL DH+ KG ++ +LK +V+DEAD +L++ F ++++ IL P++RR +F Sbjct: 140 IIIATPGRLVDHLENTKGFSLRNLKVLVMDEADRILNMDFEEEVDKILKVIPRERRTFLF 199 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + D VRV ++++ + + + + + +D +V+IL Sbjct: 200 SATMTKKVQKLHRASLVDPVRVEVSTKFQTVEQLQQYYIFIPVKYKDVYLVHILNEMAGN 259 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF +T R +L + L G+++Q +R +L + + I+TDV++ Sbjct: 260 SFMVFMATCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSILISTDVSS 319 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q + +R E+L Sbjct: 320 RGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEQLI 377 >gi|301344661|ref|ZP_07225402.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB056] gi|301512465|ref|ZP_07237702.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB058] gi|301595454|ref|ZP_07240462.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB059] Length = 347 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 190/340 (55%), Gaps = 9/340 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALA 59 ++ + + +AL G+ N T VQE + L KD+LVS+QTGSGKT AF LA Sbjct: 9 SLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQ 68 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118 T + +R + P L + PTRELA QV ++ + ++ GV +A +GG+ ++ Sbjct: 69 DTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQI 128 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ GA +VV TPGRL D + + L + + A+++DEAD MLDLGF +D+E I D + Sbjct: 129 QQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAAN 187 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237 + + LMFSAT + I LA+ + R+ I + + ++DI + + + Sbjct: 188 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 247 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L A+VF ST+ + LAE VVAL G + Q R+ L+ +R+GRA++ Sbjct: 248 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 307 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 +ATDVAARG+D+P + VI+ L E+ +HR GRTGR Sbjct: 308 LVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347 >gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group] Length = 2897 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 193/344 (56%), Gaps = 12/344 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P I + + G++N T +Q L+ +D++ A+TGSGKT+ G + + + Sbjct: 610 FPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL--GYLIPAFIHLRR 667 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 + +P P L +APTRELA Q+ E + ++ V C+ GG S + R+L+ GA Sbjct: 668 YQNNPMLGPTVLVLAPTRELASQIQDEAV-KFGRSSRVSCTCLYGGTSKGLQLRELERGA 726 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL D + + +++ + +VLDEAD MLD+GF I I+D P+ R+ LM+ Sbjct: 727 DIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMY 786 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYH 242 +AT +T +A + KD V+VNI S + S Y V+ L D+ + ILR Sbjct: 787 TATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPL-DKQRRLEQILRAQ 845 Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G+K I+FCST+ + + + F ++ G+ SQ ER N L R GRA + +A Sbjct: 846 ERGSK-VIIFCSTKKMCDQLARDIGR-SFGAASIHGDKSQAERDNVLNQFRTGRAPILVA 903 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 TDVAARG+D+ D+ +VI+ + + E+ +HR GRTGRAG G+S Sbjct: 904 TDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVS 947 >gi|47028621|gb|AAT09162.1| DEAD box protein AxVH [Ambystoma mexicanum] Length = 724 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/358 (33%), Positives = 195/358 (54%), Gaps = 11/358 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + +S+ GY LT VQ+ + L +D++ AQTGSGKT AF L + + L+ Sbjct: 300 NLPETLYNNISKAGYTKLTPVQKYSIPIVLARRDLMACAQTGSGKTAAFLLPILAHLM-- 357 Query: 66 NDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 D P ++ P + +APTREL Q+ + +T + V GG R + Sbjct: 358 QDGIPPPTSELQEPEVIIVAPTRELINQIFLDARKFAYRTCIKPVVVYGGTQTIHSLRQI 417 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SP 177 G +I+ TPGRL D IR + + ++ L+ +VLDEAD MLD+GF D++ ++ S + Sbjct: 418 YQGCNILCATPGRLIDIIRREKIGLTKLRYLVLDEADRMLDMGFGPDMKTLVTSPGMPTK 477 Query: 178 KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 ++R+ LMFSAT I +LA+ + K D + V + +D+ + + V ++ + +V Sbjct: 478 EERQTLMFSATFPENIQSLAREFLKPDYLFVTVGQVGGACADVQQKILEVDQYEKKDKLV 537 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 IL+ G + +VF T+ T +L + ++ G+ Q+ER AL R G+ Sbjct: 538 EILQGLGKERTMVFVGTKKMADYLTTLLCQENISATSIHGDRLQREREEALADFRFGKCH 597 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 V +AT+VAARG+D+ +++ VI+ +LS N E +HR GRTGR G G ++ N R Sbjct: 598 VLVATNVAARGLDIENVQHVINYDLSDNIEEYVHRIGRTGRCGNVGKAISFFHSNQNR 655 >gi|226942516|ref|YP_002797589.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii DJ] gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii DJ] Length = 557 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 196/365 (53%), Gaps = 11/365 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L + R Sbjct: 15 AVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPGGHPDKEHR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P A + L + PTRELA QV + LYA+ +V+ CI GGV ++ + + L G + Sbjct: 75 HGPRQARV-LVLTPTRELAAQVHDSFK-LYARDLKLVSACIFGGVGMNPQVQALSRGVDV 132 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V PGRL D + +++SH++ +VLDEAD MLD+GF D++ +L P KR+ L+FSA Sbjct: 133 LVACPGRLLDLVGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQNLLFSA 192 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I L D R+ + N I+ R + + + +++ + Sbjct: 193 TFSADIVNLTNKLLHDPERIEVTPPNTTVERIEQRVFRLPAGHKRALLAHLVTQGAWEQV 252 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ +R + L +H A+ G SQ R+ AL + G R+ +ATD+AARG Sbjct: 253 LVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKSGTIRILVATDIAARG 312 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREAN 364 +D+ L V++ EL + E+ +HR GRTGRAGR G ++ V P + + + ER+ R++ Sbjct: 313 LDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTRQSI 372 Query: 365 VSVVW 369 W Sbjct: 373 PEGDW 377 >gi|302409340|ref|XP_003002504.1| ATP-dependent RNA helicase DBP3 [Verticillium albo-atrum VaMs.102] gi|261358537|gb|EEY20965.1| ATP-dependent RNA helicase DBP3 [Verticillium albo-atrum VaMs.102] Length = 571 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/344 (35%), Positives = 185/344 (53%), Gaps = 22/344 (6%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 Y T +Q A L +D + A+TGSGKT+AF L L ++ R A + Sbjct: 195 AYTKPTPIQAASWPFTLSGRDAIGVAETGSGKTMAFALPLVESISKMKKRCIKA-----V 249 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA+Q + L A G+ GG S +R LQ GA I+V TPGRL D Sbjct: 250 VVSPTRELAMQTHEQTAQLAAHLGLKSVCVYGGASKDEQRALLQRGADIIVATPGRLKDF 309 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTL 196 + +++SH + VLDEAD MLD GF DDI+ IL + P + R+ LMF+AT ++ L Sbjct: 310 MSDGTVDLSHSRFAVLDEADRMLDKGFEDDIKAILGAMPAREDRQTLMFTATWPASVRLL 369 Query: 197 AKNYQKDAVRVNIAS----------ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 A ++ D V++ I S E + ++ I R +V D++ ++ ILR + A Sbjct: 370 ASSFMVDPVKITIGSGGKETASGSVELQANTRITQRVEVVDGRDKEQRLLQILRQYQAGQ 429 Query: 247 A-----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +VFC + +R L + V + G+L Q +R+ +L+ + G V +AT Sbjct: 430 GRHDRILVFCLYKKEATRVEGFLQQRGIHVCGIHGDLRQDQRTRSLEAFKSGSTSVMVAT 489 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DVAARG+D+P+++LV++ E+ +HR GRTGRAG+ G ++ Sbjct: 490 DVAARGLDIPEVKLVVNVTFPLTIEDYVHRIGRTGRAGKTGEAI 533 >gi|224010271|ref|XP_002294093.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335] gi|220970110|gb|EED88448.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335] Length = 471 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/353 (34%), Positives = 192/353 (54%), Gaps = 10/353 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P+ + + + G+ T +Q L+ K+++ + TGSGKT+AF L A + Sbjct: 75 SMPEYVLSEVIKCGFDKPTPIQSQGWPMALKGKNMVGISATGSGKTLAF-LLPAMIHINA 133 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P P+ L +APTRELAVQ+ E + A + + V GGV ++ R L+ G Sbjct: 134 QQYLKPGEGPIVLVLAPTRELAVQIKEECDKFGASSEIKNTVVYGGVPKSKQVRSLREGV 193 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL DH+ N+ + +VLDEAD MLD+GF + I+ R++LM+ Sbjct: 194 EIVIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMW 253 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY---- 241 SAT + LA++Y D +V + S + + D ++ SD+D N+LRY Sbjct: 254 SATWPKEVQNLARDYLSDFYQVTVGSLDLA-GNKDVTQMIDVCSDQDK-YRNLLRYLREN 311 Query: 242 -HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +VF T+ T+ L FQ A+ G+ SQ+ER L+ + +A + +A Sbjct: 312 LTSKDRVLVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQEERDWVLREFKSCQATLLVA 371 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--FVIPQN 351 TDVAARG+D+ D+++V++ + ++ E +HR GRTGRAG+KG +V FV +N Sbjct: 372 TDVAARGLDVDDIKMVVNFDFPNDTETYIHRIGRTGRAGKKGFAVSFFVTEKN 424 >gi|237845351|ref|XP_002371973.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49] gi|61676032|gb|AAX51681.1| DEAD box RNA helicase [Toxoplasma gondii] gi|211969637|gb|EEB04833.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49] Length = 479 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 196/341 (57%), Gaps = 11/341 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++S G+ + T++Q +L L+ +D++ A+TGSGKT AFGL + LL RF Sbjct: 65 SVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQRLLQRTQRF---- 120 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTREL +Q+ +++ + GV V +GG+ + + L H+VVG+PG Sbjct: 121 --YALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPG 178 Query: 134 RLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATIS 190 R+ DH++ KG ++ +K +VLDEAD +L L F ++ +L+ SP +R+ ++FSAT++ Sbjct: 179 RVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMT 238 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 ++ L K K V++ + S+ S + +LV + + L + + IVF Sbjct: 239 TKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLHLSPSSVIVF 298 Query: 251 CSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 +T A+ +R T + HL FQ V L G+++Q +R AL R +AT+V +RG+D Sbjct: 299 TNTCAN-ARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATEVGSRGLD 357 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +P +++VI+ ++ + + +HR GRT RAGR G ++ ++ Q Sbjct: 358 IPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQ 398 >gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43] gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43] Length = 508 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 203/365 (55%), Gaps = 11/365 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q + P L +DV+ AQTG+GKT AF L + L A P A L ++PT Sbjct: 34 TPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPILHRL-APGKPAGPKKA-RVLILSPT 91 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 REL+ Q+ + ++ L K + AV +GGVS+ + + L +G +++ TPGRL D I + Sbjct: 92 RELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKTLASGVDVLIATPGRLMDLIEQRA 151 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 ++++ ++ VVLDEAD+MLD+GF I+ IL +P R+ L+FSAT+ I L+ + D Sbjct: 152 VSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPATRQTLLFSATMPKEIRQLSDRHLTD 211 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 + V++ + +++ + + + A+ +++R + IVF T+ + K Sbjct: 212 PIEVSVIPAKKTADRVEHSVMHMQPGAKMGALASLIRDRKGERVIVFTRTKRGADKAAKR 271 Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323 L A+ G SQ +R AL R G V IATD+AARGID+P + LV++ EL + Sbjct: 272 LEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVLIATDIAARGIDVPGVSLVVNYELPN 331 Query: 324 NPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVVWEPAPS---VEA 377 PE +HR GRT RAG +G +V F P +++ R E++ + V++ E AP V+A Sbjct: 332 VPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRDIEKMLK---VAIPVENAPEGTYVDA 388 Query: 378 IRERD 382 + + D Sbjct: 389 LADPD 393 >gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H] gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia psychrerythraea 34H] Length = 466 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 116/367 (31%), Positives = 191/367 (52%), Gaps = 15/367 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ ++GY + +Q + + +DV+ +AQTG+GKT F L L L + + Sbjct: 19 KAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSS 78 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA Q+ +E + V GGV ++ + L+ G ++V TP Sbjct: 79 NNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDVLVATP 138 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + S L+ +LDEAD MLD+GF DI+ ++ + PK R+ L+FSAT SP Sbjct: 139 GRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSATFSPE 198 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK + + +++ +EN + V + + ++++ + + +VF Sbjct: 199 IRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLIKENNWQQVLVFTK 258 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ ++ TK L A+ G SQ R+ AL +DG ++ +ATD+AARGID+ Sbjct: 259 TKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAARGIDIDL 318 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357 L V++ +L + PE+ +HR GRT RAG G ++ VI Q+++R+ Sbjct: 319 LPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGIEHVIQQHIERKVI 378 Query: 358 RLFREAN 364 F AN Sbjct: 379 EKFIPAN 385 >gi|293628906|dbj|BAJ04860.1| vasa homolog [Cynops pyrrhogaster] Length = 717 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/349 (34%), Positives = 193/349 (55%), Gaps = 11/349 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P+ + + +S+ GY LT VQ+ + L ++D++ AQTGSGKT AF L + + ++ Sbjct: 281 NLPETLNKNISKAGYAKLTPVQKHSIPIVLAKRDLMACAQTGSGKTAAFLLPILAHMM-- 338 Query: 66 NDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 D +P S P A+ +APTREL Q+ + T + V GG R + Sbjct: 339 QDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHSLRQI 398 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SP 177 G +I+ TPGRL D IR + + ++ L+ +VLDEAD MLD+GF D++ ++ S S Sbjct: 399 YQGCNILCATPGRLLDIIRREKIGLAKLRYLVLDEADRMLDMGFGPDMKILITSPGMPSK 458 Query: 178 KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 ++R+ LMFSAT I +LAK + K D + V + SD++ + V + + +V Sbjct: 459 EERQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKDKLV 518 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 IL+ G + +VF T+ T +L + ++ G+ Q+ER AL R G+ Sbjct: 519 EILQGLGTERTMVFVKTKKKADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCN 578 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V +AT+VAARG+D+ +++ VI +LS N E +HR GRTGR G G ++ Sbjct: 579 VLVATNVAARGLDIENVQHVIIFDLSDNIEEYVHRIGRTGRCGNVGKAI 627 >gi|33598813|ref|NP_886456.1| putative ATP-dependent RNA helicase [Bordetella parapertussis 12822] gi|33574943|emb|CAE39607.1| putative ATP-dependent RNA helicase [Bordetella parapertussis] Length = 481 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 197/380 (51%), Gaps = 11/380 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L+ D+L +AQTG+GKT F L + L+ Sbjct: 3 AIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPG 62 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTREL QV ++ + V GGV+++ + L+ I+V TPG Sbjct: 63 RPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPG 122 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI +L PK+R+ L+FSAT S I Sbjct: 123 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 182 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +LA+ D V++ N + LV + + + +++R G +VF T Sbjct: 183 RSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHLIRESGWHQVLVFTRT 242 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + A+ G SQ R+ AL +DG V +ATD+AARG+D+ L Sbjct: 243 KHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQL 302 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR---EANVSV 367 V++ EL + PE+ +HR GRTGRAG G +V ++ + + + ERL + E Sbjct: 303 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRAVD 362 Query: 368 VWEP---APSVE--AIRERD 382 W P P+ E A RER+ Sbjct: 363 GWTPPAGGPTAEDRADRERE 382 >gi|212635941|ref|YP_002312466.1| DEAD box family ATP-dependent RNA helicase [Shewanella piezotolerans WP3] gi|212557425|gb|ACJ29879.1| ATP-dependent RNA helicase, DEAD box family [Shewanella piezotolerans WP3] Length = 447 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 193/351 (54%), Gaps = 15/351 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAS 60 ++ Q + + L G T +QE + L KD++ S++TGSGKT+AF L ++ Sbjct: 7 SLDQRLLQTLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAMQRMISC 66 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L++ D P A+ + PTRELA QV +L L A T +GG + + + + Sbjct: 67 KALSKRD-------PRAVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L H VV TPGRL DH++ L+++ L+ ++ DEAD MLDLGF + ++ I +++ KR Sbjct: 120 LARDPHFVVATPGRLADHLKQHHLHLNGLELLIFDEADRMLDLGFAEQLKQINNAADHKR 179 Query: 181 RM-LMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237 R LMFSAT+ + +A K V I + N +H DI R L D A+++ Sbjct: 180 RQTLMFSATLDHGDVDEIAAELLKTPEHVAIGAGNLEHKDITQRIFLCDHLDHKEALLSR 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL+ K I+F +TR R K LA+ F+ +LSGEL Q R+ + G ++ Sbjct: 240 ILKDEQQKQIIIFTATRQDTDRLAKKLADDGFKTASLSGELKQSARNQIMDEFSRGLQQI 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + TDVA+RG+DL ++ LVI+ ++ E +HR GRTGRAG KG +V ++ Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLV 350 >gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus] Length = 510 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/332 (37%), Positives = 179/332 (53%), Gaps = 12/332 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K F P+++ EAL RG T +Q A L L KD++ A+TG+GKT+AF L +A Sbjct: 3 FKDFPLKPEIL-EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L +R P AL + PTRELA+QV EL + VV GG +++ Sbjct: 62 RLAPSQER---GRKPRALVLTPTRELALQVASELTAVAPHLKVV--AVYGGTGYGKQKEA 116 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L GA VV TPGR D++R L++S ++ VLDEADEML +GF +++E +L ++P R Sbjct: 117 LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 176 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ LA+ Y K+ V +N+ + + + AV + R + ++L Sbjct: 177 QTLLFSATLPSWAKRLAERYMKNPVLINVIKD--EPVTYEEEAVPAPVRGRLEVLSDLLY 234 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVALSGELSQQERSNALQMMRDGRARVC 298 A+VF T+A + L HL Q AL G+LSQ ER L R G RV Sbjct: 235 VASPDRAMVFTRTKAETEEIAQGLLRLGHLAQ--ALHGDLSQGERERVLGAFRQGEVRVL 292 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLH 330 +ATDVAARG+D+P ++LV+H L E H Sbjct: 293 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 324 >gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+] gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+] Length = 488 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 187/337 (55%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 133 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 186 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 187 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 246 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + T+ Sbjct: 247 IRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPHDVLTMTT 306 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V D + + + ++ A++FC+TR V Sbjct: 307 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 366 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ G++ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 367 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 426 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 427 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVR 463 >gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris BisA53] Length = 517 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 203/381 (53%), Gaps = 12/381 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +Q+ + + +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAASGYTTPTPIQDQAIPHVMARRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + A + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLTRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +V+DEAD MLD+GF DIE I P R+ L F+AT+ I Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPTEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHG-AKNAIVF 250 + + + + V++ ++ + V + + +LR +NAI+F Sbjct: 192 RRITEAFLHNPVKIEVSKPASTAVTVTQSQVAAGREPHQKRETLRQLLREASDLQNAIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ K L +H F V AL G++ Q R+ AL+ R G + +A+DVAARG+D+ Sbjct: 252 CNRKREVALLAKSLLKHGFSVGALHGDMDQSARTAALEAFRKGELPLLVASDVAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREANVSV 367 P++ V + ++ +P++ +HR GRTGRAGR G +V V P + + A E+L + V Sbjct: 312 PEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTAVTLVAPPDGKSVAAIEKLIGQEIPRV 371 Query: 368 VWEPAPS---VEAIRERDAQR 385 AP VE RE A+R Sbjct: 372 QLGDAPPETEVEGEREAPARR 392 >gi|300853611|ref|YP_003778595.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528] gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528] Length = 496 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 198/371 (53%), Gaps = 8/371 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +++ + GY N + VQE ++ + KD++V +QTGSGKT AF + + + E Sbjct: 30 ILKSIEKLGYKNPSQVQEKVIPLIFKNKDIIVKSQTGSGKTAAFAIPICEKIELEEKN-- 87 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L +APTRELA+Q+ + + + G + + ++L+ H++VG Sbjct: 88 ----PQVLVLAPTRELALQIKEDFYDIGRFKRINCTAIFGKEPITTQIKELKQRTHVIVG 143 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR DHI L++ ++ +++DEADEML++GF D ++ +LD PK R L+FSATI Sbjct: 144 TPGRTLDHIEKDTLSLKKIQYLIIDEADEMLNMGFIDQVKAVLDKLPKNRVTLLFSATIP 203 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L Y + + V I +E+ + I+ + + + + ++ +++++F Sbjct: 204 QEILKLCAAYMNNPINVEIDAEDPVINRINQIYYQIEAYKKFDLLNKLVYTQRPESSMIF 263 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ +V + + L G + Q ER + ++ + G + TDVAARGID+ Sbjct: 264 CRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKRFKRGEFIFLVCTDVAARGIDV 323 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369 ++ +I+ ++ E+ +HR GRTGRAG+ G ++ FV P+ R E + + N+++ Sbjct: 324 ENITHIINYDIPMEKESYVHRIGRTGRAGKSGTAITFVTPKEY-RFLEEIEKFFNLTIEK 382 Query: 370 EPAPSVEAIRE 380 PS E + + Sbjct: 383 GTIPSKEEVEK 393 >gi|226952982|ref|ZP_03823446.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC 27244] gi|294650564|ref|ZP_06727921.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC 19194] gi|226836303|gb|EEH68686.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC 27244] gi|292823561|gb|EFF82407.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC 19194] Length = 383 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 201/357 (56%), Gaps = 12/357 (3%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE + PQ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + Sbjct: 5 FETLKLHPQ-LKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIN 63 Query: 61 TLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 LL + RF P AL +APTRELA+Q+ + + L + + + +GGV ++ Sbjct: 64 DLLNNPIQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQ 121 Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 ++ L +N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ S Sbjct: 122 KKMLDRNFVDIIVATPGRLIDFVEQKEVWLDRIEFLVIDEADRLLDMGFIPSVKRIVRYS 181 Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P K R+ LMFSAT S + LA+ + + V V I E + + D++ R +VA D+ Sbjct: 182 PSKEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNVDVEQRVYVVAKEDKYKL 241 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 + +ILR ++F + R V R L ++V LSGE++Q +R L + G+ Sbjct: 242 LQDILRDEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQGK 301 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 + IATDVA RGI + + V++ L ++ +HR GRTGRAG +G+S+ + ++ Sbjct: 302 HNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSED 358 >gi|224135589|ref|XP_002322111.1| predicted protein [Populus trichocarpa] gi|222869107|gb|EEF06238.1| predicted protein [Populus trichocarpa] Length = 710 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 183/344 (53%), Gaps = 19/344 (5%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPLA 77 Y + +Q A + L+++DV+ A+TGSGKT AF L + + + L + A P A Sbjct: 310 YKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTCAFVLPMLTYISRLPPMSEENEAEGPYA 369 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + +APTRELA Q+ E G+ V +GG S+ + ++ G +V+ TPGRL D Sbjct: 370 VVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLID 429 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-----------------R 180 + + ++ VVLDEAD M+D+GF + +LD+ P R Sbjct: 430 CLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYR 489 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 MFSAT+ PA+ LA+ Y ++ V V I + + I ++ S++ + + +L Sbjct: 490 TTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMTKESEKSSRLHRLLD 549 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G K AIVF +T+ + K L +H ++V L G SQ++R +L+ R R V +A Sbjct: 550 ELGDKTAIVFVNTKKNADMVAKNLDKHGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVA 609 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 TDVA RGID+PD+ VI+ ++ N E HR GRTGRAG+ G++ Sbjct: 610 TDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVA 653 >gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 413 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 116/333 (34%), Positives = 178/333 (53%), Gaps = 2/333 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73 LSE Y T VQ + L D++ AQTG+GKT AF L + L ++ + S Sbjct: 16 LSELNYSEPTQVQAEAIPAILAGSDLMAGAQTGTGKTAAFALPILERLSQLKSSQTSYEL 75 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA+QV + + A+ GGVS+ + L+ G I++ TP Sbjct: 76 TPVRALILTPTRELALQVHQSFVRYGDGLTLKSAIVYGGVSIDAQADILKAGVDILIATP 135 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+R L ++ L +V DEAD MLD+GF+D+I+ IL PK+R+ L+FSAT Sbjct: 136 GRLLDHLRRGSLTLTQLAFLVFDEADRMLDMGFKDEIDAILKQLPKERQTLLFSATFDDG 195 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L+K KD + + N ++ R V + + +++ + ++F Sbjct: 196 VFNLSKRLLKDPKLIEVGKRNAAAGKVEQRVYAVDADRKSELLCHLILSKKWRQVLIFSR 255 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + + L + +A G+LSQ R LQ + G +V +ATDVAARG+D+ Sbjct: 256 KKQGADKLAAKLVNEGVKALAFHGDLSQSVREKVLQEFKSGELQVLVATDVAARGLDVES 315 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LE+V++ EL E+ +HR GRTGRAG G+++ Sbjct: 316 LEVVVNYELPFVAEDYVHRIGRTGRAGNSGLAI 348 >gi|316934368|ref|YP_004109350.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315602082|gb|ADU44617.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris DX-1] Length = 469 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/346 (34%), Positives = 192/346 (55%), Gaps = 10/346 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GYV+ T +Q+ + L +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAAAGYVSPTPIQQQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + A + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +V+DEAD MLD+GF DIE I P R+ L F+AT+ I Sbjct: 132 RLLDHTERGGLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPTEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA---KNAI 248 + + + + ++ ++ + V ++ + +++R GA KNAI Sbjct: 192 RRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRHLIR--GATDLKNAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ + V+ + L H F V AL G++ Q R AL+ R G + +A+DVAARG+ Sbjct: 250 IFCNRKREVALLARSLQRHGFSVGALHGDMDQTARMAALEAFRKGELPILVASDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 D+P++ V + ++ +P++ +HR GRTGRAGR G ++ ++ + Q+ Sbjct: 310 DIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTALTIVAPSDQK 355 >gi|118092587|ref|XP_001232052.1| PREDICTED: similar to Gu protein [Gallus gallus] Length = 713 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 206/375 (54%), Gaps = 21/375 (5%) Query: 4 FENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P G + L RG L VQ NP KDV+ A+TG+GKT +F + L Sbjct: 135 FSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEK 194 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L A++ +P L +APTRELA QV ++ + + K + VA GG + + + Sbjct: 195 LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRK--LTVACFYGGTPYNGQIDLI 252 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 ++G I+VGTPGR+ DH++ L+++ +K VVLDE D+MLD+GF + +E IL + KK Sbjct: 253 RSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDS 312 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ Q + +++ A+ S R Sbjct: 313 EDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAIECHWSQRAA 372 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++++ Y G+ IVFC T+ + L + Q +L G++ Q++R L+ Sbjct: 373 VIGDVIQVYSGSYGRTIVFCETKKDANEL--ALNASIKQDCQSLHGDIPQKQREITLKGF 430 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 R+G +V +AT+VAARG+D+P+++LV+ + + E+ +HRSGRTGRAGR G+ + Sbjct: 431 RNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICF--- 487 Query: 351 NMQRRAERLFREANV 365 QR+ E R V Sbjct: 488 -YQRKEENQLRYVEV 501 >gi|90020267|ref|YP_526094.1| ATP-dependent RNA helicase RhlB [Saccharophagus degradans 2-40] gi|89949867|gb|ABD79882.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40] Length = 392 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 193/346 (55%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 N+ ++ ALS+ + +++Q L LR DVL AQTG+GKT AF +AL LL Sbjct: 12 NLSPLVMRALSDLKFTECSAIQAKSLPFTLRGHDVLGKAQTGTGKTAAFLIALIEDLLGT 71 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E +R+ A +L IAPTRELA+Q+ ++ E L T + V + +GGV ++ + LQ Sbjct: 72 PIEEERY--AGEARSLVIAPTRELAMQIAKDAENLVKHTDLKVHILVGGVDYAKQLQKLQ 129 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179 I+V TPGRL D + + + ++ +V+DEAD MLD+GF ++ I+ +P Sbjct: 130 AEHIDILVATPGRLLDFCEKRAVYLDQVEVLVIDEADRMLDMGFIPQVKRIVRMTPPSTH 189 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT S + L++ + + V V+I EN + LV+ ++ + N++ Sbjct: 190 RQTLLFSATFSEDVLRLSEQWMHEPVTVSIEDENVAADRVKQVVYLVSSEEKFTVLGNLM 249 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R +N ++F + R L F+V LSGE++Q +R L+ R G+ + Sbjct: 250 REPDVENIMIFANRRDQCRDLHHKLQRRGFRVGLLSGEIAQNKRIRTLEDFRTGKLTALV 309 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + V++ L PE+ +HR GRTGRAG++G+SV Sbjct: 310 ATDVAGRGIHIDGISHVVNYTLPEEPEDYVHRIGRTGRAGKEGVSV 355 >gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase domain-containing protein [Kangiella koreensis DSM 16069] gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM 16069] Length = 458 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/374 (32%), Positives = 197/374 (52%), Gaps = 15/374 (4%) Query: 3 IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 IF+ + + +A + + + VQE + P L DV+VSA+TGSGKT AF L + L Sbjct: 6 IFQELHSGLQKAFQKLKFEVPSEVQEKAIEPILDGHDVMVSAETGSGKTAAFLLPIIHNL 65 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 L R + L +APTRELA Q+ + L T + + IGG ++ + Sbjct: 66 LENPSRHTSTRV---LILAPTRELARQIDKHARDLTQFTQIKTGLIIGGADYKYQQAIFR 122 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 + I++ TPGR+ +H +G +++ L+ +V+DEAD+M ++GF DD++ I R+ Sbjct: 123 DNPEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFCKSDRQT 182 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILR 240 L+FSAT+ +Y D + + + +D + ++ A L ++ +L Sbjct: 183 LLFSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQFIITADDLVHKEKLTQWLLT 242 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + AIVFC+T+ V R ++ H L G++SQ R++ + RD + +V IA Sbjct: 243 NEEYRKAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMTQFRDSKIKVLIA 302 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 +DVAARGID+ D++LVI+ +++ N E+ +HR GRT RAG G +V +I Sbjct: 303 SDVAARGIDVKDIDLVINFDMAHNAEDYIHRIGRTARAGETGKAVSLISH---------- 352 Query: 361 REANVSVVWEPAPS 374 RE N+ V E A S Sbjct: 353 REWNLMVTIEKAIS 366 >gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8] gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8] Length = 517 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/332 (37%), Positives = 179/332 (53%), Gaps = 12/332 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K F P+++ EAL RG T +Q A L L KD++ A+TG+GKT+AF L +A Sbjct: 10 FKDFPLKPEIL-EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 68 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L +R P AL + PTRELA+QV EL + VV GG +++ Sbjct: 69 RLAPSQER---GRKPRALVLTPTRELALQVASELTAVAPHLKVV--AVYGGTGYGKQKEA 123 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L GA VV TPGR D++R L++S ++ VLDEADEML +GF +++E +L ++P R Sbjct: 124 LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 183 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ LA+ Y K+ V +N+ + + + AV + R + ++L Sbjct: 184 QTLLFSATLPSWAKRLAERYMKNPVLINVIKD--EPVTYEEEAVPAPVRGRLEVLSDLLY 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVALSGELSQQERSNALQMMRDGRARVC 298 A+VF T+A + L HL Q AL G+LSQ ER L R G RV Sbjct: 242 VASPDRAMVFTRTKAETEEIAQGLLRLGHLAQ--ALHGDLSQGERERVLGAFRQGEVRVL 299 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLH 330 +ATDVAARG+D+P ++LV+H L E H Sbjct: 300 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 331 >gi|238893853|ref|YP_002918587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae NTUH-K2044] gi|238546169|dbj|BAH62520.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 451 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 199/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GYV T +Q+ + L+ +D++ SAQTG+GKT F L L L+ +N+ + Sbjct: 15 AVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLI-QNEPHAKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QVG + + V GGVS++ + L+ G I+V TP Sbjct: 74 RPVRALILTPTRELAAQVGENVCDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++ ++ +VLDEAD MLD+GF DI +L P +R+ L+FSAT S Sbjct: 134 GRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ + + V +A N I V + + + ++ + +VF Sbjct: 194 IKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ + Sbjct: 254 TKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEE 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL ++ + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAI 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 AGYEPDPSIKA 384 >gi|271500987|ref|YP_003334012.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii Ech586] gi|270344542|gb|ACZ77307.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586] Length = 452 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 193/371 (52%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T VQ + L +D++ SAQTG+GKT F L L LL E+ + Sbjct: 15 AVEEQGYREPTPVQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ-LLNESPVLAKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G ++ + V GGVS++ + L+ G I++ TP Sbjct: 74 RPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILIATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V + N + V + + +++ H + +VF Sbjct: 194 IKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLIGKHNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + ++L + A+ G SQ R+ AL +DG RV +ATD+AARG+D+ Sbjct: 254 TKHGANHLAELLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIERLLKREIPRIAI 373 Query: 369 --WEPAPSVEA 377 +EP P+++A Sbjct: 374 PGYEPDPTIKA 384 >gi|34581357|ref|ZP_00142837.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246] gi|28262742|gb|EAA26246.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246] Length = 410 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 1 MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 60 SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 111 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P+KR Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I +++ Y + VR+ + + N+ ++I ++ V+ ++ +A+ L Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLG 231 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + I+F T+ S + K+L A+ G+LSQ++R + R R+ +A Sbjct: 232 NREG-SVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 345 >gi|209885134|ref|YP_002288991.1| putative ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5] gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5] Length = 469 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 188/345 (54%), Gaps = 8/345 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +QE + L +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTMLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV ++ A + +A+ IGG+S + L G I++ TPG Sbjct: 72 MPRTLILEPTRELAAQVQENIDHYCAGQKLNIALLIGGMSFGDQDAKLMRGVDILIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L F+AT+ P I Sbjct: 132 RLLDHTERGKLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILR-YHGAKNAIV 249 + + + + +V I+ + + + + SD + + +LR KNAI+ Sbjct: 192 RRITETFLHNPEKVEISRPASTATTVTQSQIGIG-SDAHAKRELLRQLLRDAKDLKNAII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+ + V+ K L +H F AL G++ Q R AL R G + +A+DVAARG+D Sbjct: 251 FCNRKRDVAILHKSLQKHGFGAAALHGDMDQSARMTALDQFRKGELPLLVASDVAARGLD 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 +P++ V + ++ +P++ +HR GRTGRAGR G ++ ++ Q+ Sbjct: 311 IPEVSHVFNFDVPYHPDDYVHRIGRTGRAGRLGTAISIVSPTDQK 355 >gi|328849915|gb|EGF99087.1| hypothetical protein MELLADRAFT_50777 [Melampsora larici-populina 98AG31] Length = 395 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 108/325 (33%), Positives = 184/325 (56%), Gaps = 11/325 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 +++Q+ + P + +DV+ AQ+G+GKT F +++ ++ + AL ++PT Sbjct: 46 SAIQQRAILPITKGRDVIAQAQSGTGKTATFSISILQSIDTQ------IRETQALVLSPT 99 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA Q+ + L + CIGG S+ + R L +G H+V GTPGR+ D IR + Sbjct: 100 RELATQIQSVILALGDYMNIQCHACIGGTSIGEDIRKLDHGQHVVSGTPGRVYDMIRRRN 159 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L ++K +VLDEADE+L+LGF+D I + P + ++++ SAT+ + + + D Sbjct: 160 LRTRNIKMLVLDEADELLNLGFKDQIYDVYRYLPPQTQVVVLSATLPYDVLEMTTKFMTD 219 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260 +R+ + + I + VA+ + + + ++ A++FC+TR V Sbjct: 220 PIRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 277 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T+ + E F V ++ G++ Q+ER + R+G +RV I TDV ARGID+ + LVI+ + Sbjct: 278 TEKMREANFTVSSMHGDMPQKERDTIMGEFRNGTSRVLITTDVWARGIDVQQVSLVINYD 337 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345 L SN EN +HR GR+GR GRKG+++ Sbjct: 338 LPSNRENYIHRIGRSGRFGRKGVAI 362 >gi|315126555|ref|YP_004068558.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913] gi|315015069|gb|ADT68407.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913] Length = 440 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 190/337 (56%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ +G T +Q + L D+ ++TGSGKT+AF L ++ + + Sbjct: 16 LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV +L L A T + +GG + + + + L+N H VV TPGR Sbjct: 74 PRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKALRNDPHFVVATPGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA- 192 L DH++ + L +S L+ ++ DEAD +LDLGF D ++ I + + + R+ L+FSAT+ A Sbjct: 134 LADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLINELADHRLRQTLLFSATLDHAQ 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251 + L++N K ++ +++ N QHSDI L D A++ + L I+F Sbjct: 194 VDALSRNLLKKPKQIMLSAANEQHSDIKQTLYLADHLDHKEALLEHFLNQDNVGQCIIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TRA SR ++ L F+ VAL+G+L+Q +R + + ++ I TDVA+RG+DL Sbjct: 254 ATRADTSRLSESLNSKGFKSVALAGDLTQSKRLDIMDAFSRENFKILITTDVASRGLDLL 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + VI+ +L + E +HR GRTGRAG KG ++ ++ Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNALSLV 350 >gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia vietnamiensis G4] gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis G4] Length = 516 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 138/398 (34%), Positives = 207/398 (52%), Gaps = 41/398 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------- 58 P+++ AL GY T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 44 PEIV-SALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 102 Query: 59 -------ASTLLAENDRFS----PASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 A + DR + P + P L + PTRELA+QV G+ L L Sbjct: 103 SQAQQPRAPREPNQGDRRARRPQPVARPSLLVLTPTRELAMQVTTAATTYGKHLRRLRTV 162 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 163 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 216 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF DDIE I+ ++P R+ ++FSAT+ I +L + R+ I ++ ++I Sbjct: 217 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLNNPERIEIVAKIESRANIA 276 Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 V D +D + ++LR AI+F +T+ + LA+ F+ AL G+L Sbjct: 277 QTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLP 336 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGRAG Sbjct: 337 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 396 Query: 340 RKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371 R G +V ++ Q +R ER R NV +EP Sbjct: 397 RSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 434 >gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson] gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson] Length = 437 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 199/371 (53%), Gaps = 9/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q + L +D++ SAQTG+GKT F L L LL+++++ + Sbjct: 15 AVEEQGYREPTPIQRQAIPMVLAGRDLMASAQTGTGKTAGFTLPLLQ-LLSQHEQPAKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G ++ + V GGVS++ + L+ G I+V TP Sbjct: 74 RPVRALILTPTRELAAQIGENVDAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLD-LEQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDD 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V +A N I+ V + + ++ K +VF Sbjct: 193 IKALANKLLHNPASVEVARRNTASEQIEQSVYFVDKKRKRELLSQMIGAGDWKQVLVFNR 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL ++G+ RV +ATD+AARG+D+ Sbjct: 253 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKEGKIRVLVATDIAARGLDIDQ 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA R G ++ ++ + R ERL + + Sbjct: 313 LPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIAL 372 Query: 369 --WEPAPSVEA 377 +EP P+++A Sbjct: 373 PGYEPDPTIKA 383 >gi|127513380|ref|YP_001094577.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126638675|gb|ABO24318.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 460 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 130/383 (33%), Positives = 206/383 (53%), Gaps = 19/383 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALASTLLAENDR 68 +L G T +Q + L +D++ S++TGSGKT+AF L +A+ L++ D Sbjct: 28 SLEHMGIDTPTEIQTQSIPVGLSGRDLMASSKTGSGKTLAFLLPAMQRVIATKALSKRD- 86 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P L + PTRELA QV +L L A T +GG + + + + L H V Sbjct: 87 ------PRVLILLPTRELATQVYSQLRLLVANTQYKAIKILGGENFNDQAKALARDPHFV 140 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSA 187 V TPGRL DH+ + L ++ L+ ++LDEAD MLDLGF + + I ++ KRR LMFSA Sbjct: 141 VATPGRLADHLAQRHLYLNGLELLILDEADRMLDLGFAEQLRAINQAADHKRRQTLMFSA 200 Query: 188 TISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245 T+ I +A K+ V I + + ++ DI + L LS ++ + +L+ K Sbjct: 201 TLDHGQINEIAAELLKEPEHVAIGASHVENQDIAQKIYLCDNLSHKEQLLTRLLQLEPHK 260 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F +TR R VLAE F +LSGEL Q R+ + G+ ++ + TDVA+ Sbjct: 261 QVIIFTATRGDTDRLAGVLAEQGFSTSSLSGELKQAARNQIMDQFSRGQQQILVTTDVAS 320 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQ---NMQRRAERLFR 361 RG+DL ++ LVI+ ++ E +HR GRTGRAG KG ++ ++ P+ N ++ L + Sbjct: 321 RGLDLLNVSLVINFDMPKFAEEYIHRIGRTGRAGAKGDAISLVGPKDWVNFKQVQNFLRK 380 Query: 362 EANVSVVWEPAPSVEAIRERDAQ 384 S + E AP + ++++ +Q Sbjct: 381 SFEFSELEELAPKFKGLKDKPSQ 403 >gi|313899722|ref|ZP_07833225.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2] gi|312955337|gb|EFR37002.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2] Length = 477 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/368 (31%), Positives = 197/368 (53%), Gaps = 6/368 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL GY + VQEA++ L +KD+LV ++TGSGKT +F + + L+ E Sbjct: 12 ICEALHTLGYQSPLPVQEAVIPLMLEKKDILVKSRTGSGKTASFAIPIIQDLIWEE---- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +P AL ++PTRELA+Q+ E + + A + A G + +D++ H+V G Sbjct: 68 --RSPQALVLSPTRELALQIKGEFDNIGAYKRIKTAAVFGKQPFRFQAQDVKQRTHVVAG 125 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ L ++ +++DEADEML++GF + ++ I PK + MFSAT+ Sbjct: 126 TPGRVLDHLEQGTLRTEKIRYIIIDEADEMLNMGFIETVQKIFFRLPKNASVCMFSATLP 185 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA ++ K A V I S+ + + A + ++ A++ +L ++ I+F Sbjct: 186 QEIQELAHDFLKQAEVVEIESQTSVSEQMHHYAYRLKEHEKPQALLKLLCRELPESCIIF 245 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ V ++L + V L G + Q++R ++ R G+ R+ ATDVAARGID+ Sbjct: 246 AKTQEHVREICRMLYDKGISVDQLHGGMLQEDRLENMKDFRLGKLRILTATDVAARGIDI 305 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 D+ +I+ ++ + E +HR GR+ R R G ++ + Q R + L ++ + Sbjct: 306 QDVTHIINYDMPNKKETYIHRIGRSARLDRSGTAISFVSQYDDFRLQELEEYLGNALEFH 365 Query: 371 PAPSVEAI 378 + +EA+ Sbjct: 366 DSSELEAV 373 >gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca] Length = 765 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/401 (32%), Positives = 212/401 (52%), Gaps = 22/401 (5%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 161 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 220 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTRELA QV R+ + K + VA GG + + Sbjct: 221 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRK--LAVACFYGGTPYGGQIERM 278 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DH++ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 279 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 338 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 339 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 398 Query: 234 AIVNILR----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 I +++R +HG I+FC T+ ++ ++ +L G++ Q++R L+ Sbjct: 399 VIGDVIRVYSGFHG--RTIIFCETKKEAQELSQNVSIKQ-DAQSLHGDIPQKQREITLKG 455 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 R+G V +AT+VAARG+D+P+++LV+ + + E+ +HRSGRTGRAGR G+ + Sbjct: 456 FRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQ 515 Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 516 HKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 556 >gi|77917983|ref|YP_355798.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM 2380] gi|77544066|gb|ABA87628.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM 2380] Length = 435 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 203/357 (56%), Gaps = 34/357 (9%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL++ GY T +Q + L +D++ SA TG+GKT AF L L + Sbjct: 10 PRIL-KALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPALQRLTVKIA 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAH 126 R AP L +APTRELA QV + +Y K G+ AV +GGV + R L Sbjct: 69 RRK--GAPRMLVLAPTRELAGQV-MDAARVYGKYLGLTTAVLLGGVPYRDQFRALAKPLD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VV TPGRL DH++ + +++S L+ +VLDEAD MLD+GF++D++ + ++P++R+ +MF+ Sbjct: 126 LVVATPGRLLDHLQRRSIDLSCLEMLVLDEADRMLDMGFKEDVDKVCAAAPRQRQTMMFT 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIA---------------SENRQHSDIDYRAVLVALSDR 231 AT++ A+ +A+ D R++IA ++NRQH + Sbjct: 186 ATLNDAMQKMARRLLDDPFRIDIAVVKNVSDHIEQHLHVADNRQH--------------K 231 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 + + ++L++ AIVF +T+ + L+ ++ AL G+++Q R+ ++ +R Sbjct: 232 NRLLQHLLKHSDISQAIVFSATKRDADSLARDLSAQGYRAAALHGDMNQGARNRTVRDLR 291 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GR RV +ATDVAARG+D+ + V + +L E+ +HR GRTGRAG G+++ + Sbjct: 292 RGRIRVLVATDVAARGLDVAGISHVFNYDLPKFAEDYVHRIGRTGRAGATGVAISFV 348 >gi|254369445|ref|ZP_04985457.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp. holarctica FSC022] gi|157122395|gb|EDO66535.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp. holarctica FSC022] Length = 441 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 185/339 (54%), Gaps = 2/339 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL + Sbjct: 11 LICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ L + PTRELA Q+ +++ A T + V GGVS++ + L+ G I++ Sbjct: 69 AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSGVIFGGVSINPQMMKLRKGVEILI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L VLDEAD MLD+GF +D++ I + PKK + LMFSAT Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + V+ N I + + S++ NA++++++ +V Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AARGID Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L VI+ +LS+ E+ +HR GRTGRAG++G+++ ++ Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLV 347 >gi|190572660|ref|YP_001970505.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia K279a] gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia K279a] Length = 470 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 191/341 (56%), Gaps = 4/341 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL+E+GY N T +Q+ + L +D+L AQTG+GKT AFGL L L A + S Sbjct: 15 ALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQHLGTASQEVRSGP 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA QV L Y+K + + CI GGV + + L+ G ++V Sbjct: 75 RKPRALILAPTRELATQVHDSLRG-YSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190 PGRL DH+ + +++S ++ +VLDEAD MLD+GF I+ IL PK+ R+ L+FSAT Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFE 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + ++ ++ + +N I +R V + + ++++L + +VF Sbjct: 194 DNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSREQTLVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 254 ARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGIDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ Sbjct: 314 NELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQD 354 >gi|33603888|ref|NP_891448.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] gi|33568864|emb|CAE35278.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] Length = 481 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 197/380 (51%), Gaps = 11/380 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L+ D+L +AQTG+GKT F L + L+ Sbjct: 3 AIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPG 62 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTREL QV ++ + V GGV+++ + L+ I+V TPG Sbjct: 63 RPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPG 122 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI +L PK+R+ L+FSAT S I Sbjct: 123 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 182 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +LA+ D V++ N + LV + + + +++R G +VF T Sbjct: 183 RSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHLIRESGWHQVLVFTRT 242 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + A+ G SQ R+ AL +DG V +ATD+AARG+D+ L Sbjct: 243 KHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQL 302 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR---EANVSV 367 V++ EL + PE+ +HR GRTGRAG G +V ++ + + + ERL + E Sbjct: 303 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRAVD 362 Query: 368 VWEP---APSVE--AIRERD 382 W P P+ E A RER+ Sbjct: 363 GWTPPAGGPTAEDRADRERE 382 >gi|302553973|ref|ZP_07306315.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM 40736] gi|302471591|gb|EFL34684.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM 40736] Length = 475 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 178/327 (54%), Gaps = 16/327 (4%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSPAS---APLALAIAPTRELA 87 L KDV+ A+TG+GKT+ FGL L + D R P + AP AL + PTREL Sbjct: 7 LSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAEPEALTEAPQALVVVPTRELC 66 Query: 88 VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS 147 QV +L V V GG + + L+ G +VVGTPGRL D K LN+ Sbjct: 67 TQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLK 126 Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRV 207 H+K++VLDEADEMLDLGF D+E I++ P +R+ ++FSAT+ A+ LA+ Y + Sbjct: 127 HVKSLVLDEADEMLDLGFLPDVEKIINMLPVRRQTMLFSATMPGAVIGLARRYMSQPTHI 186 Query: 208 NIASENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 + S + + + YRA + D+ + IL+ G A+VFC T+ + + Sbjct: 187 SATSPDDAGATVANTKQYIYRAHNM---DKPEMVARILQAEGRGLAMVFCRTKRTAADLA 243 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 L + F A+ G+L Q R AL+ R+G+ V + TDVAARGID+ + VI+ + Sbjct: 244 DQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQS 303 Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVI 348 + LHR GRTGRAG KG ++ ++ Sbjct: 304 PEEEKTYLHRIGRTGRAGAKGTAITLV 330 >gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp. SKA14] gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp. SKA14] Length = 473 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 191/341 (56%), Gaps = 4/341 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL+E+GY N T +Q+ + L +D+L AQTG+GKT AFGL L L A + S Sbjct: 15 ALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQHLGTASQEVRSGP 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA QV L Y+K + + CI GGV + + L+ G ++V Sbjct: 75 RKPRALILAPTRELATQVHDSLRG-YSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190 PGRL DH+ + +++S ++ +VLDEAD MLD+GF I+ IL PK+ R+ L+FSAT Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFE 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + ++ ++ + +N I +R V + + ++++L + +VF Sbjct: 194 DNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSREQTLVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 254 ARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGIDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ Sbjct: 314 NELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQD 354 >gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062] gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062] Length = 476 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 190/377 (50%), Gaps = 8/377 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T++Q + L +DVL AQTG+GKT +F L + + L R A Sbjct: 15 AVEASGYTEPTAIQAGAIPYVLERRDVLGIAQTGTGKTASFTLPMITLLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + VA+ IGGVS + R L+ GA +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVEDNFNRYGVNHKLNVALLIGGVSFAEQDRKLERGADVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L + + +V+DEAD MLD+GF DIE I P R+ L FSAT+ I Sbjct: 132 RLLDHFERGKLLLQGVDILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPSEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---KNAIVF 250 L + ++ +V +A + + R D + GA +NAIVF Sbjct: 192 QRLTDTFLQNPAKVEVAKASTTAETVTQRIAAAEPEDYEKRAKLRELIEGAEDLQNAIVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ + L H F V AL G++ Q+ R L + G ++ +A+DVAARG+D+ Sbjct: 252 CNRKRDVATLFRSLVRHEFSVGALHGDMDQRSRMTMLDNFKKGNIKILVASDVAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW- 369 P + V + +L E+ +HR GRTGRAGR G ++ ++ ++ + + + W Sbjct: 312 PSVSHVFNFDLPIQAEDYVHRIGRTGRAGRDGTAISIVTGKDEKALQAINETIGKELEWV 371 Query: 370 -EPAPSVEAIRERDAQR 385 EP + E+ ++R Sbjct: 372 GEPVDFSAPVEEKKSRR 388 >gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1] Length = 570 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 189/336 (56%), Gaps = 6/336 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +A+ E GY T +Q+ + L +DVL AQTG+GKT +F L + L A Sbjct: 17 PELL-QAVEESGYTTPTPIQQQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEILAAGRA 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + A P +L +APTRELA QV + + A+ IGG S+ + L G + Sbjct: 76 K---ARMPRSLILAPTRELAAQVAENFDKYGKYHKLNKALIIGGESMSDQIAILDRGVDV 132 Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++ TPGRL D RG+ L ++ +K +V+DEAD MLD+GF D++ I+ PK R+ L FS Sbjct: 133 LIATPGRLLDMFDRGRIL-LNDVKVLVIDEADRMLDMGFIPDVQRIVSMLPKMRQTLFFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ P I LA + + +++++++ ++ +V D+ + +I+R KN Sbjct: 192 ATLGPEIRKLADEFLMNPKEISVSAQSSTAVTVEQFLAVVDHIDKRETLRHIIRIENLKN 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A +FC+ + V K L +H F VV + G++SQ R +L + G AR+ + +DV AR Sbjct: 252 AFIFCNRKRDVDILFKSLKKHGFDVVQMHGDMSQPARLESLAKFKSGEARLLVCSDVVAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 GID+ + V + ++ + E+ +HR GRTGRAG G Sbjct: 312 GIDIKAVSHVFNFDVPIHAEDYVHRIGRTGRAGETG 347 >gi|88797378|ref|ZP_01112968.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297] gi|88780247|gb|EAR11432.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297] Length = 462 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/392 (33%), Positives = 201/392 (51%), Gaps = 13/392 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ Y +T +Q+ L L +DV+ A+TGSGKT AFGL + L E R Sbjct: 18 LNTLNYTAMTEIQQKTLPLVLDGQDVIAQAKTGSGKTAAFGLGVLQALQVERFRIQ---- 73 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +L + PTRELA QV +EL L A + + GG+ + L +GAHI+VGTPG Sbjct: 74 --SLILCPTRELADQVAQELRKLARAIHNIKILTLCGGMPFGPQIGSLAHGAHIIVGTPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ +H+R L + ++ +V DEAD MLD+GF++ I+ I+D P +R+ L+FSAT I Sbjct: 132 RIEEHLRKGTLKLDDVQTLVFDEADRMLDMGFQEVIDTIVDQVPAQRQTLLFSATYPDEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCS 252 +L + A V + S + Q I+ R + DR +L N ++FC+ Sbjct: 192 DSLCARVTRKATLVQVESAH-QADVIEQRFYRTESFDDRLQMSQRLLLNDKPMNTLIFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ L + F +AL G++ Q++R+ L +G V +ATDVAARG+D+ Sbjct: 251 TKRETDEVADFLKQAGFDALALHGDMEQRQRNETLIRFANGSVSVLVATDVAARGLDIDK 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L+ VI+ ++ +PE HR GRTGRAG +G + + + R+ + + Sbjct: 311 LDAVINFHIAKDPEVHTHRIGRTGRAGERGRAYSFFAEKEGHKLLRMDLAQDPLGHPDTP 370 Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404 PS E + Q Q P+ I G +K+ V Sbjct: 371 PSAEVLN----QSPFQAPMATLQIDGGKKQKV 398 >gi|323491944|ref|ZP_08097113.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546] gi|323313802|gb|EGA66897.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546] Length = 482 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ ++GY + +QE + L +DV+ +AQTG+GKT F L + L +N Sbjct: 12 ILKAIQDQGYDKPSPIQEQAIPAVLNGQDVMAAAQTGTGKTAGFTLPILERL--DNGTRV 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVV 129 + AL + PTRELA QV +E + Y++ + V GGV ++ + L+ G+ IVV Sbjct: 70 KGNHVRALILTPTRELAAQV-QENVFKYSRYQRLTSTVVFGGVKINPQMLKLRKGSDIVV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + + L+ +VLDEAD MLD+GF DI IL P KR+ L+FSAT Sbjct: 129 ATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V ++++ EN I+ + +V +++ K +V Sbjct: 189 SQEIRELAKGLVNNPVEISVSPENSTAVTIEQSIYPADKRKKAPMLVKLIKDGDWKQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ +R L + + G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FCRTKHGANRLAHFLNKEEITAAPIHGNKSQGARTRALADFKSGDVRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL + E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAISLV 347 >gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74] gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74] Length = 485 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/336 (34%), Positives = 177/336 (52%), Gaps = 1/336 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+E GY N T +QE + L +D+L AQTG+GKT AF + + L E + + Sbjct: 12 ILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQLLSEERSKST 71 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + L + PTRELA+Q+ + V GGVS H + L+ G +++ Sbjct: 72 GGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQVNTLKAGVDVLI 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + +++ ++ VLDEAD MLD+GF D++ ++ P R+ L FSAT+ Sbjct: 132 ATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPTHRQSLFFSATM 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P + LA + +V + + I+ V D+ +V+IL K+A+V Sbjct: 192 PPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHILDDKNIKSALV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + K L + A+ G SQ R AL + RV +ATD+AARGID Sbjct: 252 FARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVLVATDIAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L VI+ EL + PE +HR GRTGRAG G+++ Sbjct: 312 VDELSHVINYELPNIPETYVHRIGRTGRAGHDGIAL 347 >gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. JLS] gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS] Length = 507 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 187/345 (54%), Gaps = 8/345 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+E G ++QE L L D++ A+TG GKT AFG+ L + + ++ Sbjct: 21 ICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQRVTTDTEK-E 79 Query: 71 PASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 + P AL + PTREL +QV +L ++L A + V I GG + L+ GA Sbjct: 80 LSGIPRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYEPQIESLRKGA 139 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D + L + L +VLDEADEMLDLGF DIE IL +P R+ ++F Sbjct: 140 DVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQTPDTRQAMLF 199 Query: 186 SATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 SAT+ I TLA+ + Q +R + H A D+ + IL+ G Sbjct: 200 SATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDKVEMVSRILQADG 259 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F T+ + + LAE F+V A+ G+L Q R AL+ R G V +ATDV Sbjct: 260 RGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTGEVDVLVATDV 319 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ D+ VI+ ++ + + +HR GRTGRAG+ G++V ++ Sbjct: 320 AARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLV 364 >gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group] gi|75326432|sp|Q75HJ0|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName: Full=OsPL10a gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group] gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa Japonica Group] gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group] gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group] Length = 637 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/379 (33%), Positives = 205/379 (54%), Gaps = 22/379 (5%) Query: 11 IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64 +G+AL+E YV T VQ + + +D++ AQTGSGKT AF + S +++ Sbjct: 181 LGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMSSR 240 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + R S + PLAL ++PTREL+VQ+ E +TGV V V GG +H++ R+L+ Sbjct: 241 PPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQLRELE 300 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK 179 G I+V TPGRL D + +++ +K + LDEAD MLD+GF I I +D P+ Sbjct: 301 RGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 360 Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ ++FSAT I +A ++ D + + + I R V +D+ + ++++ Sbjct: 361 VRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRSYLMDL 420 Query: 239 LR------YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 L HG + +VF T+ L + F ++ G+ +QQER AL+ + Sbjct: 421 LHAQKANGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALRSFK 480 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350 G + +ATDVAARG+D+P + VI+ +L ++ ++ +HR GRTGRAG+ G++ + Sbjct: 481 SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEG 540 Query: 351 --NMQRRAERLFREANVSV 367 ++ R L +EAN V Sbjct: 541 NLSLARPLCELMQEANQEV 559 >gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella bacilliformis KC583] gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain protein [Bartonella bacilliformis KC583] Length = 471 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/367 (33%), Positives = 197/367 (53%), Gaps = 9/367 (2%) Query: 26 VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 +QE + L+ +D+L AQTGSGKT+AFGL + S +L D+ SP +A AL + PTRE Sbjct: 43 IQEQAIPVMLKGRDILGIAQTGSGKTLAFGLPILSQILTFGDKRSPKTAR-ALILVPTRE 101 Query: 86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145 LAVQ+ + + + + +GGVS ++ + + G +V+ TPGRL D +R K ++ Sbjct: 102 LAVQIEEMISAVVKGAHLSTCLIVGGVSRFKQIKRMGAGVDVVIATPGRLMDLVREKFVD 161 Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205 +S + +VLDEAD MLD+GF +D+ I K+ + +FSAT+ I LA + V Sbjct: 162 LSRSRFLVLDEADRMLDMGFINDVRRIAKLLCKEHQTALFSATMPKEIKELANGLLNEPV 221 Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265 ++ + + +I + V +++ N + +L + IVF T+ T+ L Sbjct: 222 KIEVVPQGTTAVEITQKLYCVPKNEKRNILNRLLVNPDLISVIVFIRTKHGADAITRYLK 281 Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325 V + G SQ R +AL+ R+G +V +ATD+AARGID+P + VI+ +L + Sbjct: 282 NMGHAVATIHGNKSQNARQSALKAFREGSVKVLVATDIAARGIDIPGVSHVINYDLPEDA 341 Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQ----RRAERLFR----EANVSVVWEPAPSVEA 377 E+ +HR GRTGR G G ++ + + + R ER+ R NV + +E P Sbjct: 342 ESYVHRIGRTGRNGASGDAITLFDEESEESRLRAVERIIRMKLTRENVPLQYETYPEKPF 401 Query: 378 IRERDAQ 384 E D + Sbjct: 402 TLESDEK 408 >gi|317401375|gb|EFV82010.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54] Length = 591 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 133/391 (34%), Positives = 213/391 (54%), Gaps = 28/391 (7%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FEN+ P ++ AL + G+ T+VQ + + L D++VS+QTGSGKT AF L A Sbjct: 3 FENLGLAPALL-SALQDAGFTTPTTVQASAIPQALAGHDLMVSSQTGSGKTAAFMLP-AL 60 Query: 61 TLLAENDRFSPASAPLA---LAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIG 110 +A+ PA+ + L +APTRELA+QV GR+L L A +G Sbjct: 61 HRIAQ----MPANKGVGVQVLVLAPTRELALQVTDATATYGRKLADLR------TATVVG 110 Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170 G+ + + L ++V TPGRL DH+ + ++ + +VLDEAD MLD+GF +DIE Sbjct: 111 GMPYGAQLKALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIE 170 Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--L 228 I+ P +R+ L+FSAT+ + LA +D R+ +A +H++I +++L A Sbjct: 171 TIISRLPVERQTLLFSATLDGTVAKLAARMMRDPQRIEVAGAKEKHTNI-TQSLLYADDA 229 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 S + + ++LR AIVF ST+ LA+ F AL G+++Q++R+ L Sbjct: 230 SHKMQLLDHVLRDASLDQAIVFTSTKRGADDLADHLADQGFAAAALHGDMNQRQRTRTLS 289 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ G+ R+ +ATDVAARGID+ + ++ +L E+ +HR GRTGRAGR G++ + Sbjct: 290 QLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLA 349 Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 + + + R+ S+ E +E R Sbjct: 350 THSERHKVRRIEHYIGQSITPEVIAGLEPKR 380 >gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans ATCC 17616] gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616] Length = 480 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 198/371 (53%), Gaps = 7/371 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + L + S Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSA 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGVS++ + L+ G IVV T Sbjct: 74 KRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT S Sbjct: 134 PGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + + +A N + + V + + +++R H +VF Sbjct: 194 EIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID+ Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDID 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE V Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREV 373 Query: 368 V--WEPAPSVE 376 + +EP P+ + Sbjct: 374 IAGFEPDPNAK 384 >gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces pombe 972h-] gi|74654514|sp|Q9P6N8|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3 gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces pombe] Length = 465 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/339 (33%), Positives = 182/339 (53%), Gaps = 7/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA + G+ T +Q+ + L ++DV+ AQTGSGKT AF L + L F Sbjct: 59 EACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF--- 115 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ +APTRELA Q+ + E + GV V +GG+ + + L H++V TP Sbjct: 116 ---FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTP 172 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +++DEAD +LD+ F I+ IL P +RR L+FSAT++ Sbjct: 173 GRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTS 232 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + VRV ++S+ + R + +D +V ++ + I+F Sbjct: 233 KVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFA 292 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T R +L F + L G+LSQ R AL + G +ATDVAARG+D+P Sbjct: 293 RTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIP 352 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ ++ + +HR GRT RAGR G S+ ++ Q Sbjct: 353 LVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQ 391 >gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H] Length = 793 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/334 (35%), Positives = 182/334 (54%), Gaps = 3/334 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I A+ E GY + T +Q + L+ DVL AQTG+GKT +F L + L R Sbjct: 300 EPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLQKLAGSRAR 359 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 A P +L + PTRELA+QV + + A+ IGG S+ +R L G ++ Sbjct: 360 ---ARMPRSLILEPTRELALQVAENFKLYGKYLRLTHALLIGGESMAEQRDVLNRGVDVL 416 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D GL ++ +V+DEAD MLD+GF DIE I+ P R+ L FSAT Sbjct: 417 IATPGRLLDLFGRGGLLLTQTSTLVIDEADRMLDMGFIPDIEKIVALLPAHRQTLFFSAT 476 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++P I LA + + V + ++ ++ + I+ V+V ++ + +LR ++AI Sbjct: 477 MAPEIRRLADAFLRHPVEITVSRQSSVATTIEEALVIVPEDEKRRTLKKLLRRENVQSAI 536 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC+ + V + L +H + L G+L+Q R + L+ R G + + +DVAARGI Sbjct: 537 VFCNRKRDVDMIQQYLTKHDIEAGHLHGDLAQSLRFSTLERFRSGELKFLVCSDVAARGI 596 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 D+ L V + +L N E+ +HR GRTGRAG +G Sbjct: 597 DIGGLSHVFNYDLPFNAEDYVHRIGRTGRAGNEG 630 >gi|261314221|ref|ZP_05953418.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261303247|gb|EEY06744.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] Length = 462 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 192/363 (52%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 33 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 92 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P V++ Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 331 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391 Query: 371 PAP 373 PAP Sbjct: 392 PAP 394 >gi|63139086|gb|AAY33860.1| eukaryotic initiation factor 4A [Pennisetum glaucum] Length = 414 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/360 (34%), Positives = 193/360 (53%), Gaps = 15/360 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 60 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L H+K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ MQ +R + SVV E P+ Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMQFDIQRFY-----SVVIEELPT 408 >gi|291277508|ref|YP_003517280.1| DEAD box helicase family protein [Helicobacter mustelae 12198] gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198] Length = 513 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/350 (34%), Positives = 188/350 (53%), Gaps = 11/350 (3%) Query: 4 FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FEN+ + + + + + G+ T +QE + L+E+DV+ AQTG+GKT AF L + Sbjct: 19 FENLGLSKTVLKGVLDAGFRMPTPIQEQAIPAILQERDVIAQAQTGTGKTAAFTLPILE- 77 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +L N AL I PTREL +QV E+ L + GG S+ R+ L Sbjct: 78 MLHHNQSIE------ALIITPTRELTMQVSDEIYKLGRPKNIKTVCVYGGQSIKRQCELL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 I+V TPGRL DH++ L+ + VVLDE+DEMLD+GF DDIE I + P + Sbjct: 132 AKNPQIMVATPGRLLDHLKSGRLDNFTPRFVVLDESDEMLDMGFLDDIEEIFNYLPNNIQ 191 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILR 240 +L+FSAT+ AI LA+ + + + I + N + D+ ++ +R A++ IL Sbjct: 192 VLLFSATMPEAIKKLAQRILHNPIHIKITPTANMTNLDVTQYYCVIGEGERQEALMRILD 251 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +I+F T+ L ++ L G++ Q++R A+ + ++ +A Sbjct: 252 TENIYKSIIFTRTKKEADGLYNFLEARGYKAGTLHGDMEQRDRRAAILDFKKCHYKILVA 311 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 TDVA+RG+D+ D+ V + + +N E +HR GRTGRAG+KG ++ FV P Sbjct: 312 TDVASRGLDISDVSHVFNYHIPTNSEVYVHRIGRTGRAGKKGKAITFVTP 361 >gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9] gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium profundum SS9] Length = 422 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/377 (33%), Positives = 195/377 (51%), Gaps = 12/377 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDR 68 + ++E G+ T +QE + L D++ AQTG+GKT AFGL + LLA E+D Sbjct: 14 DTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMIQRLLASQQSEHDE 73 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A AL + PTRELA QV + T + VAV GG S+ + + L++G Sbjct: 74 GYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTSMGVQVKALKSGVD 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH +++S ++ +VLDEAD MLD+GF DI+ I+ P+KR+ L+FS Sbjct: 134 ILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIMQRMPRKRQTLLFS 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S + LA + D + + EN + V + + ++ Sbjct: 194 ATFSNQVKKLAYDILADPKLIEVTPENITAESVTQMVYPVDKHRKRELLSYLIGSRNWNQ 253 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++F T+ K L + V+++G+ SQ R AL ++G+ R +ATDVAAR Sbjct: 254 VLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDFKEGKVRAMVATDVAAR 313 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQRRAERLFREAN 364 G+D+ L V++ +L E+ +HR GRTGRAG G +S+ I + RA + Sbjct: 314 GLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSIDEEWALRAIEELLDTR 373 Query: 365 VSVVW----EPAPSVEA 377 + W EP P+++A Sbjct: 374 LPQEWLEGYEPDPTIKA 390 >gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484] Length = 596 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 162/566 (28%), Positives = 273/566 (48%), Gaps = 30/566 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + A+++ G+V +++Q + L +D++ AQTG+GKT AFGL L + + A Sbjct: 31 GLPAPLERAVADLGFVTPSAIQSQAVPALLAGRDIVGVAQTGTGKTAAFGLPLLAAVDAG 90 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124 A+ + PTRELA+QV + G+ V GG ++R + G Sbjct: 91 TAGVQ------AIVLTPTRELAMQVADAITSFATHLPGLAVVAVYGGSPFLPQQRAIARG 144 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A +VVGTPGR+ DH+ L + ++ +VLDEADEML +GF +D++ +L S+P +R++ + Sbjct: 145 AQVVVGTPGRVLDHLDRGTLVLDQVRYLVLDEADEMLRMGFAEDVDRVLASTPDRRQVAL 204 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I +A+ + V + +A ++ + + +V + A+ +L A Sbjct: 205 FSATMPAPIRRVAEQHLHQPVEITVARQSSTVTTVRQTYAVVPYRHKIGALGRVLAVTDA 264 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVF TR + L E +SG+++Q +R + +R G V +ATDVA Sbjct: 265 DATIVFVRTRGAAEEVGSALVERGISAAHISGDVAQSDREKIVDRLRSGALDVLVATDVA 324 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363 ARG+D+ + LV++ ++ E +HR GRTGRAGR+G+++ FV P Q R + R Sbjct: 325 ARGLDVERIGLVVNFDVPREAETYVHRIGRTGRAGREGVALSFVTPAE-QSRLRTIERTT 383 Query: 364 NVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKH---DPEKIAA 418 V++ P P+ E R A + + P + + D ++ V LA H DP ++ A Sbjct: 384 RVTLEQVPIPTPAEVSAHRVALLLGRTPARAELGRLDVYREAVAAHLAAHPGTDPIELLA 443 Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFR-DDSRAFKVGGGSRDNFK----------GSS 467 + G P L +R R R +VGG R + G Sbjct: 444 AVTALA-VGDEGPTPRDGDDLDDALERARLTPGRHERVGGDDRPPRERRRAETHIAGGPP 502 Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523 + ++VG + + L+ L G+ + +G I + V++ SAD VD L R Sbjct: 503 RWRVAVGHRDGLQPGALVGALTGEGGLTGKDVGKIDIFGSFALVDIPGGLSADVVDRLSR 562 Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSS 549 T + ++++ G +P + S Sbjct: 563 TRVAGRPLRIRVDTGPRPGHGASRPS 588 >gi|221502154|gb|EEE27898.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG] Length = 479 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 196/341 (57%), Gaps = 11/341 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++S G+ + T++Q +L L+ +D++ A+TGSGKT AFGL + LL RF Sbjct: 65 SVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQRLLQRTQRF---- 120 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTREL +Q+ +++ + GV V +GG+ + + L H+VVG+PG Sbjct: 121 --YALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPG 178 Query: 134 RLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATIS 190 R+ DH++ KG ++ +K +VLDEAD +L L F ++ +L+ SP +R+ ++FSAT++ Sbjct: 179 RVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMT 238 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 ++ L K K V++ + S+ S + +LV + + L + + IVF Sbjct: 239 TKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLHLSPSSVIVF 298 Query: 251 CSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 +T A+ +R T + HL FQ V L G+++Q +R AL R +AT+V +RG+D Sbjct: 299 TNTCAN-ARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATEVGSRGLD 357 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +P +++VI+ ++ + + +HR GRT RAGR G ++ ++ Q Sbjct: 358 IPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQ 398 >gi|126173892|ref|YP_001050041.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|125997097|gb|ABN61172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 451 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 190/346 (54%), Gaps = 5/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ Q + +++ G T++QE L L KD++ S++TGSGKT+AF L +++ Sbjct: 7 SLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P L + PTRELA QV +L L A T +GG + + + + L Sbjct: 67 --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184 H +V TPGR+ DH+ K L ++ L+ +VLDEAD MLDLGF ++ I D++ KRR LM Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLM 184 Query: 185 FSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYH 242 FSAT+ I +A K+ V I + + +H+DI R L D A++ +L+ Sbjct: 185 FSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARLLKDE 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K I+F +TR R L E F ALSG+L Q R+ + G+ +V + TD Sbjct: 245 THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQVLVTTD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VA+RG+DL ++ LV++ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 305 VASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga lytica DSM 7489] gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM 7489] Length = 429 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/338 (36%), Positives = 182/338 (53%), Gaps = 6/338 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--RFS 70 +A+ ++GY + +QE + P L KDVL SAQTG+GKT F L L LL+E R Sbjct: 14 KAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLLH-LLSEQKALRHR 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A L + PTRELA Q+ ++ + AV GGV+ + +L+ G ++V Sbjct: 73 PVRA---LILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIANLKRGMDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L++ ++ VLDEAD MLD+GF DIE ++ P KR+ LMFSAT S Sbjct: 130 TPGRLLDLHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIERVMKLIPAKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + ++V EN I + VA + I+ ++ + +VF Sbjct: 190 KDIKKLAHGILNNPIQVEATPENTAVEVIKQKVYRVAKGKKTGLIIKLISDGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K ++ A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 250 TRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKGTLRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L VI+ E+ + E+ +HR GRTGRAG G +V ++ Sbjct: 310 PLLPHVINYEIPNISEDYVHRIGRTGRAGASGEAVSLV 347 >gi|73996610|ref|XP_862993.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 3 [Canis familiaris] gi|119578414|gb|EAW58010.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_a [Homo sapiens] Length = 634 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/369 (32%), Positives = 192/369 (52%), Gaps = 29/369 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 211 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 270 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 271 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 330 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 331 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 390 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 391 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 450 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 451 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 510 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 511 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 570 Query: 337 RAGRKGMSV 345 RAG+ G+++ Sbjct: 571 RAGKSGVAI 579 >gi|304409763|ref|ZP_07391383.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307304119|ref|ZP_07583872.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304352281|gb|EFM16679.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306913017|gb|EFN43440.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 451 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 190/346 (54%), Gaps = 5/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ Q + +++ G T++QE L L KD++ S++TGSGKT+AF L +++ Sbjct: 7 SLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P L + PTRELA QV +L L A T +GG + + + + L Sbjct: 67 --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184 H +V TPGR+ DH+ K L ++ L+ +VLDEAD MLDLGF ++ I D++ KRR LM Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLM 184 Query: 185 FSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYH 242 FSAT+ I +A K+ V I + + +H+DI R L D A++ +L+ Sbjct: 185 FSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARLLKDE 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K I+F +TR R L E F ALSG+L Q R+ + G+ +V + TD Sbjct: 245 THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQVLVTTD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VA+RG+DL ++ LV++ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 305 VASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|239946654|ref|ZP_04698407.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes scapularis] gi|239920930|gb|EER20954.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes scapularis] Length = 410 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 193/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 1 MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLID 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 60 SFIK--------NKTTALILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQ 111 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P+KR Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKR 171 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I L++ Y + VR+ + + N+ ++I ++ ++ ++ + + L Sbjct: 172 QVLMFSATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKFSELTKQLG 231 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + I+F T+ S + K+L + A+ G+LSQ +R + R R+ +A Sbjct: 232 NREG-SVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVA 290 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIR 345 >gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp. JE062] gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp. JE062] Length = 453 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/349 (35%), Positives = 188/349 (53%), Gaps = 4/349 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL +GY T +QE + L KD+L AQTG+GKT AF + L LL R +P S Sbjct: 16 ALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLLQRLLESRYRAAPKS 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +L + PTRELA Q+ + ++ +T + + +GGV + LQ G ++V TPG Sbjct: 76 V-RSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFHALQRGLDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R G++ L+ VLDEAD+MLDLGF ++E I PKKR+ L FSAT+ I Sbjct: 135 RLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKKRQTLFFSATMPREI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ + + V V+ A + + + + + +L + A+VF T Sbjct: 195 RDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKELLEKDECERALVFTLT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R L A+ G++SQ ER L + G+ + +ATDVAARGID+ D+ Sbjct: 255 KKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTLVATDVAARGIDVSDI 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERL 359 VI+ ++ + EN +HR GRT RAG+ G ++ F +P++ M R ++L Sbjct: 315 SHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRAIQKL 363 >gi|217973860|ref|YP_002358611.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|217498995|gb|ACK47188.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 451 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 190/346 (54%), Gaps = 5/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ Q + +++ G T++QE L L KD++ S++TGSGKT+AF L +++ Sbjct: 7 SLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P L + PTRELA QV +L L A T +GG + + + + L Sbjct: 67 --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184 H +V TPGR+ DH+ K L ++ L+ +VLDEAD MLDLGF ++ I D++ KRR LM Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLM 184 Query: 185 FSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYH 242 FSAT+ I +A K+ V I + + +H+DI R L D A++ +L+ Sbjct: 185 FSATLDHYEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARLLKDE 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K I+F +TR R L E F ALSG+L Q R+ + G+ +V + TD Sbjct: 245 THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQVLVTTD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VA+RG+DL ++ LV++ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 305 VASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|125587400|gb|EAZ28064.1| hypothetical protein OsJ_12029 [Oryza sativa Japonica Group] Length = 472 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/345 (33%), Positives = 194/345 (56%), Gaps = 6/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+++ A G+ T +Q + L +D++ QTGSGKT AFGL + LL ++ Sbjct: 49 VPELVA-ACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFGLPIIQALLKQD 107 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A A ++PTRELA Q+G++ E L + G+ V +GGV ++ L H Sbjct: 108 K----PQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPH 163 Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGRL DH+ KG +++ LK +VLDEAD++L++ F+ ++ IL+ PK+RR +F Sbjct: 164 IVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKERRTFLF 223 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ ++ L + ++ V+V +AS+ + V +D +V++L Sbjct: 224 SATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNELPGS 283 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T S L F+ +++SG++SQ +R AL + + I TDVA+ Sbjct: 284 MIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVAS 343 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+ +++VI+ ++ N ++ +HR GRT RAG G +V ++ Q Sbjct: 344 RGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQ 388 >gi|115444197|ref|NP_001045878.1| Os02g0146600 [Oryza sativa Japonica Group] gi|75325389|sp|Q6Z2Z4|IF4A3_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD-box ATP-dependent RNA helicase 23; AltName: Full=eIF4A-2 gi|45736055|dbj|BAD13081.1| putative translational initiation factor eIF-4A [Oryza sativa Japonica Group] gi|113535409|dbj|BAF07792.1| Os02g0146600 [Oryza sativa Japonica Group] gi|125538069|gb|EAY84464.1| hypothetical protein OsI_05839 [Oryza sativa Indica Group] gi|215707096|dbj|BAG93556.1| unnamed protein product [Oryza sativa Japonica Group] gi|222622164|gb|EEE56296.1| hypothetical protein OsJ_05367 [Oryza sativa Japonica Group] Length = 414 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 190/355 (53%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D L L Sbjct: 60 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLDYGLVECQSLVL 115 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 A PTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 116 A--PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L H+K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV++ PA Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPA 408 >gi|292487709|ref|YP_003530582.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora CFBP1430] gi|292898944|ref|YP_003538313.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946] gi|291198792|emb|CBJ45901.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946] gi|291553129|emb|CBA20174.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora CFBP1430] gi|312171822|emb|CBX80079.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora ATCC BAA-2158] Length = 470 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 198/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q + L +D++ SAQTG+GKT F L L L + N Sbjct: 15 AVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG ++ + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D L++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCS 252 TLA+ + +V +A N + LV R ++++L G + +VF Sbjct: 195 KTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD-KKRKRELLSLLIGRGNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL +DG+ RV +ATD+AARGID+ + Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLVATDIAARGIDIEE 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ER+ RE + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERVLKREIPRMAI 373 Query: 369 --WEPAPSVEA 377 +EP P+++A Sbjct: 374 DGFEPDPAIKA 384 >gi|108761880|ref|YP_632259.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622] gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622] Length = 501 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 134/375 (35%), Positives = 192/375 (51%), Gaps = 22/375 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY T +Q+ + L +DVL AQTG+GKT AF L + L A+ +PA Sbjct: 15 AVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPILQRLSAK----APAG 70 Query: 74 A--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P+ L + PTRELA QVG + AV GGV + + + L+NG ++V Sbjct: 71 GARPVRCLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQTLRNGVDVLVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + +++ L+ VLDEAD MLD+GF D+ ++ + P KR+ L FSAT+ Sbjct: 131 TPGRLLDLMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKRQTLFFSATLP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA++ D +RV + + + + V + + ++L+ A+VF Sbjct: 191 PDIVDLARSILTDPIRVEVTPASSTAETVSQQVYFVEREQKRGLLTHLLKEGNIHRALVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L A+ G SQ R AL R G RV +ATD+AARGID+ Sbjct: 251 TRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLVATDIAARGIDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFREANV 365 L V++ +L + PE +HR GRTGRAG G +V + + RA ER R NV Sbjct: 311 DGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFC--DAEERAYLRDIERTIRR-NV 367 Query: 366 SVV-------WEPAP 373 VV +PAP Sbjct: 368 PVVEDHPYRSGQPAP 382 >gi|256424779|ref|YP_003125432.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] gi|256039687|gb|ACU63231.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] Length = 492 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 182/344 (52%), Gaps = 8/344 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL GY T +Q+ + L +D+L AQTG+GKT AF + L L D+ + Sbjct: 40 KALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLLQ--LMHQDQQAQQ 97 Query: 73 SAPL----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 L AL + PTRELA+Q+ + V GGVS H + L+ G I+ Sbjct: 98 RKGLRNIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQHPQTEALKKGVDIL 157 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D I + + +K VLDEAD MLD+GF D++ ++ P++R+ L FSAT Sbjct: 158 IATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIVKLPEQRQSLFFSAT 217 Query: 189 ISPAITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 + P I TLAK + + +V + + I V +D+ N +++IL+ K Sbjct: 218 MPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRNLLLHILKDKAIKTL 277 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ R K L + A+ G SQ R AL + + RV +ATD+AARG Sbjct: 278 LVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQQTRVLVATDIAARG 337 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 ID+ +L V++ EL + PE +HR GRTGRAG G+++ F P+ Sbjct: 338 IDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPE 381 >gi|332297922|ref|YP_004439844.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM 12168] gi|332181025|gb|AEE16713.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM 12168] Length = 610 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 113/326 (34%), Positives = 184/326 (56%), Gaps = 6/326 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GYV T VQE +L L D+ V +QTG+GKT A+ +++ +L + + AL Sbjct: 20 GYVTCTPVQEQVLKGSLEGADLYVQSQTGTGKTAAYLISIIQEMLTREE----VAGKKAL 75 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELAVQV +E + L T + GGV ++ L+N +I++GTPGR+ D Sbjct: 76 VMVPTRELAVQVEQEAKKLLEFTPLKAGSFYGGVGYTQQTAMLKNNVNIIIGTPGRVIDL 135 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTL 196 +++S + +V+DEAD M D+GF D+ ++ PK R+ ++FSAT++ + L Sbjct: 136 QESGAMDLSSVAFLVVDEADRMFDMGFYPDLRTLIKVLPKTHDRQTMLFSATLNTYVKNL 195 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 A Y ++A + I +E +ID + V+ + ++ IL++ ++ IVFC+T+ S Sbjct: 196 AWEYTEEAKEITIEAEQLTVEEIDQVLLHVSSDSKMKLLLGILQHEKPESVIVFCNTKRS 255 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 K L + + + G+L Q +R L+ + G + +ATDVAARGID+ DL +V Sbjct: 256 CEVVAKRLQLNGIESEFIIGDLPQAKRLQVLESFKRGSLKCLVATDVAARGIDVNDLAMV 315 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKG 342 ++ +L + EN +HR GRT RAG+ G Sbjct: 316 VNYDLPNESENYVHRIGRTARAGKSG 341 >gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255] gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255] Length = 461 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 206/382 (53%), Gaps = 26/382 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +A+++ GY T +Q + L +DVL AQTG+GKT F L + L Sbjct: 11 PKVM-KAINDVGYDTPTPIQSEAIPHALEGRDVLGIAQTGTGKTAGFTLPMIHKLARGRA 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R A P +L +APTRELA QV E + +A+ IGGVS + R + G + Sbjct: 70 R---ARMPRSLVLAPTRELAAQVAENFEQYAKYVKLDMALLIGGVSFKDQDRLIDRGVDV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL DH L ++ ++ +V+DEAD MLD+GF DIE I +P R+ L FSA Sbjct: 127 LIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFKLTPFTRQTLFFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRA---VLVALSDRDNAIVNIL 239 T++P I + + + ++ V +A SEN + I ++A L A RD + I+ Sbjct: 187 TMAPEINRITQEFLQNPKLVEVARQATTSENITQNVICFKAENRKLEAKKKRD-LLRTII 245 Query: 240 RYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + G K N IVFC+ + V K L +H V A+ G+L Q+ R L ++ + Sbjct: 246 KDEGEKLTNGIVFCNRKVDVDIVMKSLKKHGHSVGAIHGDLDQRYRMEVLAGFKNNDITL 305 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR-- 354 +A+DVAARG+D+P + V + ++ + E+ +HR GRTGRAGRKG + + +P ++ Sbjct: 306 LVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRKGWAFMLCLPHEIKHLD 365 Query: 355 RAERLFREANVSVVWEPAPSVE 376 + E L V +P P +E Sbjct: 366 KIEEL--------VKQPIPRLE 379 >gi|326504546|dbj|BAJ91105.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326508600|dbj|BAJ95822.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 456 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 112/339 (33%), Positives = 190/339 (56%), Gaps = 7/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA G+ T +Q + L+ +DV+ QTGSGKT AF L + LL F Sbjct: 39 EACDAMGWKQPTKIQAGAIPHALQGRDVIGLGQTGSGKTGAFALPIIQALLEHRQPF--- 95 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A ++PTRELA+Q+ + E L + G+V +V +GGV ++ + HIVVGTP Sbjct: 96 ---FACVMSPTRELAIQIAEQFEALGSGIGLVCSVLVGGVDRMQQVLSIAKRPHIVVGTP 152 Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH++ KG +++ +K +VLDEAD++L+L F++ ++ IL PK+RR +FSAT++ Sbjct: 153 GRLLDHLKDTKGFSLTKVKYLVLDEADKLLNLEFKESLDDILKEIPKERRTYLFSATMTK 212 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 ++ L + ++ V+V ++S+ + V +D +V++L ++F Sbjct: 213 KVSKLQRACLRNPVKVEVSSKYSTVDTLKQEWYFVPADYKDCYLVHVLNELQGSMIMIFV 272 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T S L F+ +++SG++SQ +R AL + + I TDVA+RG+D+ Sbjct: 273 RTCESTRLLALTLRNLGFKALSISGQMSQDKRLGALNKFKAKDFNILICTDVASRGLDIQ 332 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++V++ ++ N ++ +HR GRT RAG+ G +V + Q Sbjct: 333 GVDVVMNYDIPMNSKDYVHRVGRTARAGQSGYAVSFVNQ 371 >gi|220914235|ref|YP_002489544.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6] gi|219861113|gb|ACL41455.1| DEAD/DEAH box helicase domain protein [Arthrobacter chlorophenolicus A6] Length = 631 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 192/365 (52%), Gaps = 4/365 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66 P+ + + L+ +G V +Q L L +DVL +TGSGKT+AF + L + L E Sbjct: 10 PKALADTLTAQGIVEPFPIQVKTLPDTLSGRDVLGRGRTGSGKTIAFAIPLVARLAEREA 69 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F P+ L +APTRELA Q+ +E L G+ V GG+S R+ + L+ G Sbjct: 70 KHFRKPGRPMGLVLAPTRELATQINATIEPLAKAAGLNTTVIYGGISQARQEKALRAGVD 129 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ PGRL D IR + L++ ++ VLDEAD M DLGF ++ ++D +P + + L+FS Sbjct: 130 IVIACPGRLEDLIRQRILSLEAVEITVLDEADHMADLGFLPVVKKLMDMTPSQGQRLLFS 189 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245 AT+ + + + Y + + ++ + +++ ++V + + IV + GA Sbjct: 190 ATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIVEL--ASGAG 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ + K L + V L G LSQ R L +G RV +ATDVAA Sbjct: 248 RRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVRVLVATDVAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + D+ELVIH + + + LHRSGRT RAG G V + Q ++L + A V Sbjct: 308 RGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDVKKLMKAAGV 367 Query: 366 SVVWE 370 V +E Sbjct: 368 EVSFE 372 >gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] Length = 451 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 198/347 (57%), Gaps = 14/347 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E +V T VQE + ++ +D++V ++TGSGKT+AF + + L S Sbjct: 18 ALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFENL---------NS 68 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV R + G V GG + R+ L+ GA +V+GTPG Sbjct: 69 GLEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLK-GASMVIGTPG 127 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D +R LN++ ++ VLDEAD MLD+GF DDI++IL +PK ++M++FSAT+ P I Sbjct: 128 RVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEI 187 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +LA+ Y K+ ++ ++ + ++ V V ++ + ++L K ++FC+T Sbjct: 188 ISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGK-YLIFCNT 246 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R ++L ++ F+ AL G++ Q R+ + + G+ + ++TDVAARGID+ + Sbjct: 247 RRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAARGIDVHGI 306 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAE 357 V++ ++ P++ +HR GRTGR G ++ FV ++ + RR E Sbjct: 307 THVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIE 353 >gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp. K31] gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31] Length = 479 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/333 (35%), Positives = 178/333 (53%), Gaps = 1/333 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+++GY T +Q + + +D+L AQTG+GKT AF L + L AE+ + +P Sbjct: 15 KALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHRL-AEDKKPAPR 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L ++PTRELA Q+ G+ VA GGV + + L G +VV TP Sbjct: 74 RGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKALAAGVDVVVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K +++ ++ VLDEAD+MLDLGF I I PK+R+ L FSAT+ Sbjct: 134 GRLMDHLGEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQNLFFSATMPSE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA K+ +V I ID + + + + +L + +IVF Sbjct: 194 IGKLAGELLKNPAQVAITPSATTVERIDQSLIFIEAQRKRPLLAELLADKSVERSIVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R K L + A+ G+ +Q +R AL + G+ + IATD+AARGID+ D Sbjct: 254 TKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKALIATDIAARGIDVND 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + V + EL + PE+ +HR GRT R G++G+++ Sbjct: 314 VSHVFNYELPNVPESYVHRIGRTARKGKEGIAI 346 >gi|331698451|ref|YP_004334690.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953140|gb|AEA26837.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 504 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 189/369 (51%), Gaps = 6/369 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + L G+ +Q A L L +D+L QTGSGKT+AFGLAL S L Sbjct: 68 GLPEAVLRTLDAEGFTAPFPIQAATLPVTLAGRDLLGRGQTGSGKTLAFGLALLSRLAGG 127 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + A P L + PTRELA QV L+ G+ A +GG+S +R+ L G Sbjct: 128 R---AVARRPRGLVLVPTRELAQQVVDALDPFARALGLRAAAVVGGLSFNRQADALARGV 184 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH + ++S ++ +DEAD M D+GF + ILD +P + L+F Sbjct: 185 DLLVATPGRLTDHTNQRTADLSGIEVTAIDEADRMADMGFLPQVRAILDLTPADGQRLLF 244 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L Y D V +AS +D+ +LV + + I G Sbjct: 245 SATLDGDVAALVSRYLHDPVTRAVASATGAVDTMDHHLLLVDSVTKARVVAEIAARDG-- 302 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ V R+ + L L G SQ +R+ A+ ++GR V +ATDVAA Sbjct: 303 RTILFARTKHGVDRWVRNLRRDGVSAAGLHGGKSQNQRNRAIADFKEGRTPVLVATDVAA 362 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LV+H + +P++ LHR+GRT R G G V ++ +R + L R+A V Sbjct: 363 RGIHVDDVSLVVHIDPPGDPKDYLHRAGRTARGGESGTVVTLVTPEERRDVDTLTRQAGV 422 Query: 366 -SVVWEPAP 373 V + AP Sbjct: 423 RPTVHDAAP 431 >gi|326798202|ref|YP_004316021.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21] gi|326548966|gb|ADZ77351.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21] Length = 419 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 184/333 (55%), Gaps = 3/333 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + GY T +Q + L +D+L AQTG+GK+ AF L + L N + Sbjct: 14 KAIHKEGYETPTPIQSQAIPVVLSGRDLLGCAQTGTGKSAAFILPILQQL---NSLPNKE 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL +APTRELA+Q+ + + V GGV+++ + L+ G I+V TP Sbjct: 71 KAVKALVLAPTRELAIQINESIATYGQLLPLKHQVVYGGVNINTQISGLKKGIDILVATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + L + + VLDEAD MLD+GF DI+ ++ P KR+ L FSAT+ P Sbjct: 131 GRLLDLVGQRVLTLRAVSHFVLDEADRMLDMGFIHDIKKVVALLPIKRQTLFFSATMPPE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 IT LA K+ VRV + + + V +++ ++++L+ + +VF Sbjct: 191 ITKLANTLLKNPVRVEVTPVSSTAEKVTQVVYAVDKANKPKLLLHLLKSEVRDHVLVFTR 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R K LA+ Q A+ G SQ R NALQ + G+ +V IATD+AARGID+ + Sbjct: 251 TKHGADRLVKFLAKQGVQAAAIHGNKSQNARQNALQAFKSGQLKVLIATDIAARGIDVEE 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L+ VI+ +L + PE +HR GRTGRAG G ++ Sbjct: 311 LKFVINFDLPNEPETYVHRIGRTGRAGASGKAL 343 >gi|187251183|ref|YP_001875665.1| superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191] gi|186971343|gb|ACC98328.1| Superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191] Length = 502 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/348 (33%), Positives = 190/348 (54%), Gaps = 10/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ ++ + + G+ T VQ + + DVL SAQTGSGKT AFG+ + L+ Sbjct: 10 SLSEITLKTIENMGFTTPTPVQAQTIPLAIEGHDVLASAQTGSGKTCAFGIPVIEHLVQN 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124 AL + PTREL QV + L + A +GG S+ ++ R L+ Sbjct: 70 KSNN-------ALIVTPTRELGEQVHKVFTMLTKNYPQLTSAFIVGGKSITQQSRALKKR 122 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 ++GTPGRL D I L++S K V DE D MLD+GF + IE I+ P KR+M+M Sbjct: 123 PRCIIGTPGRLNDMINRGELDLSKTKVAVWDEMDRMLDIGFINQIESIMAKLPVKRQMMM 182 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT + +A+ Y R+++ EN +++ + V ++ +V++LR G Sbjct: 183 FSATYPKRVIKIAEKYLVAPKRISVDPENSVAVNVEEEIISVIRDNKFETLVSLLRAKGG 242 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + ++F T+ SV K L + F+ ++ G Q +R+ A++ R+ + + +ATDVA Sbjct: 243 -STLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEKFDILVATDVA 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 ARG+D+P ++LVI+ +L E+ +HR GRT RAG KG+++ FV P + Sbjct: 302 ARGLDIPHIQLVINYDLPLRAEDYIHRIGRTARAGAKGLAISFVTPND 349 >gi|143456452|sp|Q0DB53|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group] gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group] Length = 602 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/347 (35%), Positives = 194/347 (55%), Gaps = 23/347 (6%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---------ENDRF 69 GY + T VQ + L +D++ AQTGSGKT AF L + S L+A E F Sbjct: 103 GYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSF 162 Query: 70 SPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + A+A P AL +APTRELA Q+ E + +TG+ V V GG ++ + RDL+ GA I+ Sbjct: 163 NRAAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADIL 222 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRMLM 184 V TPGRL D + +++ +K +V+DEAD MLD+GF I I++ + P+K R+ ++ Sbjct: 223 VATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTML 282 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-- 242 FSAT P I LA ++ + + + + I + L++ ++ ++++L+ Sbjct: 283 FSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSV 342 Query: 243 GAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 G N+ +VF T+ L F A+ G+ +QQER +AL+ + G Sbjct: 343 GVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLT 402 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + +ATDVA+RG+D+P++ VI+ +L + E+ +HR GRTGRAG+ G Sbjct: 403 PIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAG 449 >gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca] Length = 794 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/401 (32%), Positives = 212/401 (52%), Gaps = 22/401 (5%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 190 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTRELA QV R+ + K + VA GG + + Sbjct: 250 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRK--LAVACFYGGTPYGGQIERM 307 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DH++ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 308 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 367 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 368 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 427 Query: 234 AIVNILR----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 I +++R +HG I+FC T+ ++ ++ +L G++ Q++R L+ Sbjct: 428 VIGDVIRVYSGFHG--RTIIFCETKKEAQELSQNVSIKQ-DAQSLHGDIPQKQREITLKG 484 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 R+G V +AT+VAARG+D+P+++LV+ + + E+ +HRSGRTGRAGR G+ + Sbjct: 485 FRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQ 544 Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 545 HKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 585 >gi|303316314|ref|XP_003068159.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii C735 delta SOWgp] gi|240107840|gb|EER26014.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii C735 delta SOWgp] Length = 512 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/317 (37%), Positives = 189/317 (59%), Gaps = 11/317 (3%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 +D++ A+TGSGKT+AFGL +L N+ + + P AL I PTRELAVQ+ +L Sbjct: 134 RDLIGVAETGSGKTLAFGLPCLRRVLELNNSET-SCKPCALIITPTRELAVQIYDQLLRF 192 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + V +A GG +RR+++N A +V+ TPGRL D + +N+S +K +VLDEA Sbjct: 193 SSAVDVGIACIYGGSPKDHQRREIRN-ASVVIATPGRLKDFQADQTINLSGVKYLVLDEA 251 Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI--ASEN 213 D MLD GF DI+ I+ P +KR+ +MF+AT + LA ++ K+ V V I +S+ Sbjct: 252 DRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDI 311 Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAEHL 268 R + I ++ ++D+ ++ +LR + GAKN +VFC + R + + Sbjct: 312 RANKRIKQIVEVLQPYEKDSRLLELLRRYQDGAKNNHRILVFCLYKKEAMRVERFIGSKG 371 Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328 F+V + G++SQ ER +L+ + G + +ATDVAARG+D+P ++LV++ E+ Sbjct: 372 FKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDY 431 Query: 329 LHRSGRTGRAGRKGMSV 345 +HR GRTGRAG +G+++ Sbjct: 432 VHRIGRTGRAGAEGLAI 448 >gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27] gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27] Length = 517 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/330 (36%), Positives = 176/330 (53%), Gaps = 8/330 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K F P+++ EAL RG T +Q A L L KD++ A+TG+GKT+AF L +A Sbjct: 10 FKDFPLKPEIL-EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 68 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L +R P AL + PTRELA+QV EL + VV GG +++ Sbjct: 69 RLAPSQER---GRKPRALVLTPTRELALQVASELTAVAPHLKVV--AVYGGTGYGKQKEA 123 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L GA VV TPGR D++R L++S ++ VLDEADEML +GF +++E +L ++P R Sbjct: 124 LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 183 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ LA+ Y K+ V +N+ + + + AV + R + ++L Sbjct: 184 QTLLFSATLPSWAKRLAERYMKNPVLINVIKD--EPVTYEEEAVPAPVRGRLEVLSDLLY 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A+VF T+A + L AL G+LSQ ER L R G RV +A Sbjct: 242 VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLH 330 TDVAARG+D+P ++LV+H L E H Sbjct: 302 TDVAARGLDIPQVDLVVHYRLPDRAEAYQH 331 >gi|1170506|sp|P41379|IF4A2_NICPL RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2; AltName: Full=ATP-dependent RNA helicase eIF4A-2 gi|19697|emb|CAA43513.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana plumbaginifolia] Length = 413 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 192/355 (54%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D +S AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YSLVECQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ+G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L H+K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV + PA Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPA 407 >gi|254818841|ref|ZP_05223842.1| ATP-dependent RNA helicase [Mycobacterium intracellulare ATCC 13950] Length = 454 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 191/360 (53%), Gaps = 4/360 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+ RG + +Q L L +DVL +TGSGKT+AF + L S L N R Sbjct: 16 IVSALAARGITHPFPIQVETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVSRLSRGNRR-- 73 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 PA P L +APTRELA Q+ LE L A G+ V GGVS R+ L++G IVV Sbjct: 74 PAR-PSGLVLAPTRELATQITATLEPLAAACGLRVTTIFGGVSQTRQVAALKSGVDIVVA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 PGRL D ++ + +++ ++ V+DEAD M DLGF + IL ++P + L+FSAT+ Sbjct: 133 CPGRLEDLMKQRLISLDAIEITVIDEADHMADLGFLPGVTRILAATPNGGQRLLFSATLD 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L + +DAV ++ N S++ + V + +V+ L GA I+F Sbjct: 193 NGVDKLVTRFLRDAVSHSVDEANSPVSEMTHHVFHVDSAQAKKELVHRL-ASGAGRRILF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K L E V L G LSQ R L G ARV +ATD+AARG+ + Sbjct: 252 MRTKHQARKLAKQLTESGIPSVDLHGNLSQPARERNLARFAAGSARVLVATDIAARGVHV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 ++ELV+H + S ++ LHRSGRT RAG G V V+ ++ L R+A + V + Sbjct: 312 DEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQRQDTRELLRKAGIKVAPQ 371 >gi|254706759|ref|ZP_05168587.1| DEAD/DEAH box helicase domain-containing protein [Brucella pinnipedialis M163/99/10] Length = 535 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 192/363 (52%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 +L PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|254480020|ref|ZP_05093268.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214039582|gb|EEB80241.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 440 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/331 (32%), Positives = 185/331 (55%), Gaps = 4/331 (1%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 Y T VQE ++ L D+ VSA+TGSGKTVA+ L +L+ + + LA+ Sbjct: 20 YEKATEVQEQVIPAALEGTDLRVSAETGSGKTVAYLLPTLQRILSAP--INRKAGALAVV 77 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 + PTRELA QV + L KT + GG +R L+ +++ TPGRL +H Sbjct: 78 LVPTRELARQVQKNCRDLMQKTQLGAQAITGGADFKYQRALLRKNPELIIATPGRLLEHC 137 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLAK 198 ++ L+ ++LDEAD MLD+GFRDD+ + +R+++M SAT+ + +AK Sbjct: 138 EKGSADLGSLQTLILDEADRMLDMGFRDDVMKLASFCGAERQVIMLSATLKHKGLGGVAK 197 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + +D + ++ + HS I ++ +L + +D + ++ G A+VF + R + Sbjct: 198 DLLRDPQTIEVSEFRQPHSSIHHQRILADSQEHKDKLLCALMDKGGFTRALVFANKRTTA 257 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 R +L+ H + L GE+S +ER + + RD + + A+DVAARG+D+ D++LV+ Sbjct: 258 QRLAGLLSHHGLRCGCLHGEMSTEERKHVMTQFRDSKVDMVCASDVAARGLDVKDIDLVV 317 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + +L ++ LHR+GRTGRAG G+++ ++ Sbjct: 318 NYDLPQKGDDYLHRTGRTGRAGATGLAISLV 348 >gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis biprosthecum C19] gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis biprosthecum C19] Length = 606 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 182/342 (53%), Gaps = 5/342 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY T VQ + L+ D+L AQTG+GKT AF L + LL+ SP Sbjct: 17 LEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQHLLSNRKMPSPKMV 76 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL ++PTRELA Q+ + G+ +A GGV + + L G ++V TPGR Sbjct: 77 -RALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQYKALLGGLDVLVCTPGR 135 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L DHI K +++S ++ VLDEAD+MLDLGF I + PKKR+ L FSAT+ I Sbjct: 136 LIDHIEQKTVDLSQVECFVLDEADQMLDLGFVKPIRQVASRLPKKRQNLFFSATMPKEIG 195 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA--KNAIVFCS 252 LA D RV I E + + VL + R A+++ + Y A + +VF Sbjct: 196 VLASELLTDPKRVEITPEATTAERVSQQ-VLFIEAQRKRALLSEM-YADAVLERTLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ S R L + A+ G+ +Q +R ALQ R G+ R +ATD+AARGID+ + Sbjct: 254 TKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRALVATDIAARGIDVDN 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ EL + E +HR GRT RAG+ G+S+ + + +R Sbjct: 314 VSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERR 355 >gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus] Length = 643 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 188/340 (55%), Gaps = 10/340 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ RFS Sbjct: 223 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 282 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GGVS + RD++ G ++V GT Sbjct: 283 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIRDIERGCNVVCGT 342 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + +S L+ +VLDEAD MLD+GF D+ ++ S S + R+ LMFS Sbjct: 343 PGRLLDMIGRGK-VGVSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEDRQTLMFS 401 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I +A ++ K D + + + SD++ + V + ++++L+ G + Sbjct: 402 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGME 461 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ G+ Q+ER AL R G+ V +AT VAA Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 521 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+PD++ V++ +L +N + +HR GRTGR G G +V Sbjct: 522 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 561 >gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei T469] Length = 451 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 198/347 (57%), Gaps = 14/347 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E +V T VQE + ++ +D++V ++TGSGKT+AF + + L S Sbjct: 18 ALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFENL---------NS 68 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV R + G V GG + R+ L+ GA +V+GTPG Sbjct: 69 GLEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLK-GASMVIGTPG 127 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D +R LN++ ++ VLDEAD MLD+GF DDI++IL +PK ++M++FSAT+ P I Sbjct: 128 RVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEI 187 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +LA+ Y K+ ++ ++ + ++ V V ++ + ++L K ++FC+T Sbjct: 188 ISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGK-YLIFCNT 246 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R ++L ++ F+ AL G++ Q R+ + + G+ + ++TDVAARGID+ + Sbjct: 247 RRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAARGIDVHGI 306 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAE 357 V++ ++ P++ +HR GRTGR G ++ FV ++ + RR E Sbjct: 307 THVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIE 353 >gi|182436152|ref|YP_001823871.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464668|dbj|BAG19188.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 731 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/323 (36%), Positives = 178/323 (55%), Gaps = 16/323 (4%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVG 91 DV+ A+TG+GKT+ FGL L + D R P AP AL + PTREL QV Sbjct: 11 DVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPEQLTDAPQALVVVPTRELCTQVT 70 Query: 92 RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151 +L V V GG + + L+ G ++VGTPGRL D + L++SH++ Sbjct: 71 NDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHIRG 130 Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 +VLDEADEMLDLGF D+E I+ P KR+ ++FSAT+ A+ +LA+ Y +N S Sbjct: 131 LVLDEADEMLDLGFLPDVERIITMLPAKRQTMLFSATMPGAVISLARRYMSQPTHINATS 190 Query: 212 ENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265 + + + + YRA + D+ + IL+ G A++FC T+ + + + L Sbjct: 191 PDDEGTTVKNTVQHVYRAHNM---DKPEMLARILQAEGRGLAMIFCRTKRTAADIAEQLE 247 Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325 + F A+ G+L Q R AL+ R+G+ V + TDVAARGID+ + V++ + + Sbjct: 248 KRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDE 307 Query: 326 ENLLHRSGRTGRAGRKGMSVFVI 348 + LHR GRTGRAG KG ++ ++ Sbjct: 308 KTYLHRIGRTGRAGAKGTAITLV 330 >gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1] gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1] Length = 429 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/368 (32%), Positives = 209/368 (56%), Gaps = 13/368 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +++ E G+ + T++QE + L +DV+ A TGSGKT++F AS +L +++ Sbjct: 42 KSIDEHGFESPTAIQEKSIPLILAGEDVIGGAATGSGKTLSF----ASGILQNSEK---G 94 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV L + +A GGV ++ + ++L+N A +VVGTP Sbjct: 95 KGIQALILTPTRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQIKELKN-AEVVVGTP 153 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI + ++++K +VLDEAD M D+GF+ D+E I+ P+ R+ L+FSATI+ Sbjct: 154 GRLLDHISRNTIKLNNVKTLVLDEADHMFDMGFKVDVEKIIKECPQNRQTLLFSATITKD 213 Query: 193 ITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L++ Y ++ VRV+ S + ++ + + Y+ V + + +V +L+ + +VF Sbjct: 214 IVRLSRKYMENPVRVSTESYIDPQKLNQVVYK---VQDDMKLSLLVYLLQNEKSNLGMVF 270 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ + + K L + VA+ G L+Q ER+ L+ G V + TDVA RG+D+ Sbjct: 271 CNTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRILEKFHSGNIGVLVCTDVAGRGLDI 330 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + V + ++ + +HR GRT RAG +G ++ ++ +N + ++ +V + + Sbjct: 331 QGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKNDHANFMSVLKDNDVDIKEQ 390 Query: 371 PAPSVEAI 378 P+++ I Sbjct: 391 ALPALKKI 398 >gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella multipartita DSM 44233] gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM 44233] Length = 586 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 185/347 (53%), Gaps = 15/347 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-------LAEN 66 AL++ G ++Q L L D++ A+TG GKT+ FG+ L L + E Sbjct: 59 ALADVGIERTFAIQALTLPIALTGSDLIGQARTGMGKTLGFGVPLLQRLSHDKAVTVDEK 118 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AP A+ + PTREL VQV R+L L G+ V GG + + + LQ G Sbjct: 119 GKLPVGRAPRAVVMVPTRELCVQVTRDLHALGKALGLAVTAVYGGRAYEPQIKALQAGVD 178 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGRL D L + +K +VLDEADEMLDLGF D+E +LD P ++ ++FS Sbjct: 179 LVVGTPGRLLDLANSGHLVLGGVKVLVLDEADEMLDLGFLPDMEKVLDLVPTVKQTMLFS 238 Query: 187 ATISPAITTLAKNYQKDA--VRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRY 241 AT+ I TLA+ + +R A+E HS YRA + D+ + +L+ Sbjct: 239 ATMPGPILTLARTFMSRPMHIRAEAAAEGAMHSTTRQFVYRAHAL---DKVEMLARVLQA 295 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G +VF T+ + ++ + L E F A+ G+L Q R AL+ R G+ V +AT Sbjct: 296 RGRGLTMVFTRTKRTAAKVAEDLEERGFAAAAVHGDLGQGAREQALRAFRAGKVDVLVAT 355 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARGID+ D+ VI+ + + +HR GRTGRAG+ G +V I Sbjct: 356 DVAARGIDVDDVTHVINFQCPEEEKTYVHRIGRTGRAGKTGTAVSFI 402 >gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens] gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens] Length = 538 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 11/333 (3%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 Y T +Q L L +D+L A+TGSGKT AF L + LA+ PLAL Sbjct: 130 YTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQHCLAQPP-IRRGDGPLALV 188 Query: 80 IAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ +E++ + + G ++ +GG +++ +R +L+ G IVV TPGR DH Sbjct: 189 LAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQRSELRAGVEIVVATPGRFIDH 248 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ ++S + VVLDEAD MLD+GF I ++ S PKK + L+FSAT+ I LA+ Sbjct: 249 LQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQTLLFSATMPEEIEALAQ 308 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---------AIV 249 Y VRV + + +++ + ++ ++++ +L +++ IV Sbjct: 309 EYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLLALLVDEHSQSLDSNQPPPLTIV 368 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +A T L E + AL G SQ ER AL+ R G + +ATDVA+RG+D Sbjct: 369 FVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATDVASRGLD 428 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + + VI+ +L E+ +HR GRTGRAG G Sbjct: 429 VTGVAHVINLDLPKTMEDYVHRIGRTGRAGASG 461 >gi|56708046|ref|YP_169942.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis SCHU S4] gi|110670517|ref|YP_667074.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis FSC198] gi|224457133|ref|ZP_03665606.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis MA00-2987] gi|254370532|ref|ZP_04986537.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis FSC033] gi|254874848|ref|ZP_05247558.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp. tularensis MA00-2987] gi|54113663|gb|AAV29465.1| NT02FT0547 [synthetic construct] gi|56604538|emb|CAG45585.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis SCHU S4] gi|110320850|emb|CAL08968.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis FSC198] gi|151568775|gb|EDN34429.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis FSC033] gi|254840847|gb|EET19283.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp. tularensis MA00-2987] gi|282159241|gb|ADA78632.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. tularensis NE061598] Length = 441 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 186/339 (54%), Gaps = 2/339 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL + Sbjct: 11 LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G I++ Sbjct: 69 AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L VLDEAD MLD+GF +D++ I + PKK + LMFSAT Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + V+ N I + + S++ NA++++++ +V Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AARGID Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKYNDINVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L VI+ +LS+ E+ +HR GRTGR+G++G+++ ++ Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRSGQEGLAISLV 347 >gi|2500521|sp|Q40468|IF415_TOBAC RecName: Full=Eukaryotic initiation factor 4A-15; Short=eIF-4A-15; AltName: Full=ATP-dependent RNA helicase eIF4A-15 gi|485945|emb|CAA55739.1| unnamed protein product [Nicotiana tabacum] Length = 413 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 187/355 (52%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F + L E AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLAYE------LLECQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L H+K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV + PA Sbjct: 353 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNVVIEELPA 407 >gi|224369411|ref|YP_002603575.1| RhlE2 [Desulfobacterium autotrophicum HRM2] gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2] Length = 460 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 205/368 (55%), Gaps = 10/368 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ +GY+ T +Q ++ L +D+L AQTG+GKT AF L + +LA + Sbjct: 14 KAVKTKGYIEPTPIQIRVIPAILNGQDILARAQTGTGKTDAFALPIVE-ILARGK--AHR 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTRELA+QVG ++ + + V GGV+V+ + L+ G I+V TP Sbjct: 71 RHPRALVLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQIDRLKRGVDILVATP 130 Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL D + + +S ++ +V DEAD MLDLGF D+I IL+ P+ RR ++FSAT + Sbjct: 131 GRLLDLAAFNRDVKLSKIEFLVFDEADRMLDLGFSDEISQILELVPQDRRTMLFSATYTR 190 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA K ++ + I + LV S++ +++++ + +VF Sbjct: 191 QIRDLADKMLKTPEQIEVTPNTTVAESIVQKVHLVEKSNKRELLIHLITRSDWRQVLVFT 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ ++ + LA+ AL G SQ R+ LQ ++G R+ +ATDVAARG+D+ Sbjct: 251 RTKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQEFKNGEIRILVATDVAARGLDIT 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 L V++ ++ S E+ +HR GRTGRAG +G++V ++ + E++F ++ S++ + Sbjct: 311 GLPHVVNYDMPSVAEDYVHRIGRTGRAGIQGVAVSLVSKE-----EKVFLKSVESLLEQK 365 Query: 372 APSVEAIR 379 P VE ++ Sbjct: 366 IP-VETVK 372 >gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. holarctica URFT1] gi|295313716|ref|ZP_06804297.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. holarctica URFT1] gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 441 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 185/339 (54%), Gaps = 2/339 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL + Sbjct: 11 LICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ L + PTRELA Q+ +++ A T + AV GGVS + + L+ G I++ Sbjct: 69 AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSNNPQMMKLRKGVEILI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L VLDEAD MLD+GF +D++ I + PKK + LMFSAT Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + V+ N I + + S++ NA++++++ +V Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AARGID Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L VI+ +LS+ E+ +HR GRTGRAG++G+++ ++ Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLV 347 >gi|239831927|ref|ZP_04680256.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824194|gb|EEQ95762.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 470 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/327 (35%), Positives = 181/327 (55%), Gaps = 1/327 (0%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 41 GMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 99 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 100 ILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 159 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA Sbjct: 160 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSERQTALFSATMPKEIASLAG 219 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + +D VRV +A + ++I V ++ + +L ++ IVF T+ Sbjct: 220 SLLRDPVRVEVAPQGTTAAEITQVVHPVHTKEKRRLLSALLGDKAMRSVIVFTRTKHGAD 279 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L ++V A+ G SQ R AL RDG R+ IATD+AARGID+P + V++ Sbjct: 280 AVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILIATDIAARGIDVPGISHVVN 339 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345 +L PE +HR GRTGR G G S+ Sbjct: 340 YDLPDEPETYVHRIGRTGRNGASGASI 366 >gi|254502530|ref|ZP_05114681.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11] gi|222438601|gb|EEE45280.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11] Length = 430 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 196/369 (53%), Gaps = 5/369 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY T +Q+ + L +D++ AQTG+GKT AFGL L LLAE R +P Sbjct: 16 AIKDNGYEAPTPIQQKAIPLILDGQDLMGLAQTGTGKTAAFGLPLIERLLAEPRRAAPKG 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTREL Q+ + L T + V +GGVS++ + + + G I+V TPG Sbjct: 76 T-RALILAPTRELVNQIAKNLISFLKTTPLRVTSVVGGVSINGQVKRMSKGTDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + +++ +VLDEAD+MLDLGF + I K R+ L+FSAT+ I Sbjct: 135 RLLDLVDRNAVDLGSASYLVLDEADQMLDLGFIHALRKIAGLVAKDRQTLLFSATMPKQI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA++Y D RV ++ R + + + + ++++L ++VFC T Sbjct: 195 NELAQSYLTDPARVEVSPVGRTADKVRQKVHFMDSKAKTGFLIDVLSDQPDDMSLVFCRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R + +A+ ++ G SQ +R A++ +R G +V +ATDVAARGID+P + Sbjct: 255 KHGAERLMRKMAQAGIAAGSIHGNKSQNQRERAIKELRSGAIKVLVATDVAARGIDIPGV 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370 V + EL E +HR GRT RAG G +V P+ + R+ E+L ++ V Sbjct: 315 SHVYNFELPEVAEAYVHRIGRTARAGADGDAVALCAPEEIGLFRQIEKLI-GIDIEVASG 373 Query: 371 PAPSVEAIR 379 AP + A + Sbjct: 374 EAPPLSAAK 382 >gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 449 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 198/370 (53%), Gaps = 9/370 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T +Q + L D+L AQTG+GKT F L + L + Sbjct: 12 IVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHRLATSGTPHA 71 Query: 71 PASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 ASA P+ AL + PTRELA QV + + AV GGV ++ + + L++G I Sbjct: 72 SASAQRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINPQIKLLKHGVDI 131 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL DH++ +N+S ++ +VLDEAD MLD+GF DI +L PK R+ L+FSA Sbjct: 132 LVATPGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVLPKNRQNLLFSA 191 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LA + +A N I+ + V + + ++++ + Sbjct: 192 TFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRDKKHPMLAHLIKTNNWSQV 251 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ ++ + L + +A+ G SQ R+ AL +DG +V +ATD+AARG Sbjct: 252 LVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQVLVATDIAARG 311 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR--- 361 ID+ L V++ +L + PE+ +HR GRTGRAG G +V ++ +M + E+L + Sbjct: 312 IDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELDMLKDIEKLIKRKL 371 Query: 362 EANVSVVWEP 371 + V V +EP Sbjct: 372 PSEVIVGFEP 381 >gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia phymatum STM815] gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum STM815] Length = 522 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 193/367 (52%), Gaps = 6/367 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY + T +Q+ + L D+L AQTG+GKT F L + LL Sbjct: 15 AVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLLTMPPAPGGKR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV + + V GGV ++ + L+ G IVV TPG Sbjct: 75 VVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALRRGVDIVVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ K +++SHL+ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S I Sbjct: 135 RLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + + +A N + + V + + ++++ H +VF T Sbjct: 195 KALADSLLDAPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIKQHNWFQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID+ L Sbjct: 255 KHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREA---NVSV 367 V++ +L + PE+ +HR GRTGRAG G +V V +Q + E+L + A V Sbjct: 315 PHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIKRAVPQEVIA 374 Query: 368 VWEPAPS 374 +EP P+ Sbjct: 375 GYEPDPN 381 >gi|297621628|ref|YP_003709765.1| putative ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044] gi|297376929|gb|ADI38759.1| putative ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044] Length = 395 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 188/341 (55%), Gaps = 7/341 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I E+L E Y+ + +Q + L ++DV+ AQTGSGKT A + L + D Sbjct: 15 PKII-ESLREMKYLEPSEIQTKAIPEILNKRDVVALAQTGSGKTAACAIPLCHMVDTSKD 73 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 A AL I PTRELA+Q E + + K GV GG + + + H+ Sbjct: 74 ------AIQALVIVPTRELALQYATETQKIGKKRGVHAFAIYGGEDADIQEAKIGHRVHV 127 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL D I + +++S + + LDEADEML +GF +D+EFI++ ++ ++L+FSA Sbjct: 128 LIATPGRLIDFIYSRRIDLSQVFILALDEADEMLSMGFYEDLEFIINCLVQEHQILLFSA 187 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I +A+ + KD V + + + + S I++R + RD +++ +L + Sbjct: 188 TMPKEIRRIAEGHMKDPVDILLTQKKQGPSSIEHRFLYCRPDQRDASLIQLLNECQPVQS 247 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F TR V K L + + V L G LSQ R + R G+ + +ATDVAARG Sbjct: 248 IIFGRTRFQVESLAKSLQKSVKGVDFLHGALSQDVRRIVTRKFRGGKIQHLVATDVAARG 307 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D ++ V E+S +P+ +HRSGRTGR ++GM V ++ Sbjct: 308 LDFSEVSHVFMYEMSDDPDIYVHRSGRTGRFDKQGMVVTLV 348 >gi|317127874|ref|YP_004094156.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522] gi|315472822|gb|ADU29425.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 481 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/373 (31%), Positives = 199/373 (53%), Gaps = 13/373 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++ Y T VQ ++ + ++D++V +QTGSGKT AFG+ + + E + Sbjct: 15 IHRAITLMKYEKPTEVQREVIPLAMNKEDLVVKSQTGSGKTAAFGIPICEMMNWEERK-- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELAVQV ++ + + G +++ +L+ H+VVG Sbjct: 73 ----PQALILTPTRELAVQVREDIANIGRFKLIKALAVYGKEPFAKQKEELKQRNHVVVG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI + L + +K ++LDEADEML++GF +D+E I+ + P R ++FSAT+ Sbjct: 129 TPGRMLDHIERETLALDEIKYLILDEADEMLNMGFINDVEEIMKALPADRVTMVFSATLP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L Y ++ + IAS + I++ + V + + +I + I+F Sbjct: 189 KDVEDLCHKYMENPQHIEIASSGITTASIEHHLMEVNPKGKLALLKDITVVENPDSCIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V L + L G L Q++R + + + G R +ATDVAARGID+ Sbjct: 249 CNTKEHVDTVFSELERANYSCEKLHGGLEQEDRFSVMDGFKRGNFRYLVATDVAARGIDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369 ++ LVI+ ++ E +HR+GRTGR+G KG ++ FV P + + + +A + Sbjct: 309 DNVTLVINYDVPMEKEGYVHRTGRTGRSGNKGRAITFVTPNDGK------YLKAIEKYIG 362 Query: 370 EPAPSVEAIRERD 382 P +EA E+D Sbjct: 363 FSIPVMEAPSEKD 375 >gi|70728428|ref|YP_258177.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5] gi|68342727|gb|AAY90333.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5] Length = 496 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 195/348 (56%), Gaps = 9/348 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ A+ + G+ T +Q +L L KD + AQTG+GKT AF +++ + LL Sbjct: 110 FKLAPELM-HAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLVSIITQLL 168 Query: 64 ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + Sbjct: 169 QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKH 226 Query: 121 LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 227 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 286 Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ L+FSAT + + LAK + D V I +EN ++++ VA +D+ + N Sbjct: 287 SERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASANVEQHIYAVAGADKYKLLYN 346 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ +G + +VF + + V R + L LSG++ Q +R L+ R+G+ RV Sbjct: 347 LVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 406 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVA RGI + + VI+ L P++ +HR GRTGRAG G+S+ Sbjct: 407 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 454 >gi|119718785|ref|YP_925750.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp. JS614] gi|119539446|gb|ABL84063.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614] Length = 507 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 186/360 (51%), Gaps = 3/360 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + L++RG V T +Q A L L +DVL +TGSGKT AF L L + L A Sbjct: 14 GVPASLAAVLADRGIVQPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPLVARLTAS 73 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R + A P AL +APTREL Q+ L+ L G+ GGV + + + L+ GA Sbjct: 74 G-RPAQARKPRALVLAPTRELVNQIEEALKPLARTAGLTTQTVFGGVGQNPQVQGLRRGA 132 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ PGRL D I ++S ++ VLDEAD M DLGF + I+D +P+ + L+F Sbjct: 133 DIVLACPGRLEDLIGQGHCDLSQVEITVLDEADHMADLGFLPGVRRIMDRTPRDGQRLLF 192 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI L K + ++ V S + +D+ + VA R +V++ G Sbjct: 193 SATLDKAIDVLVKRFLRNPVTHQADSAQSPVATMDHHVLHVAREHRVPVLVDLTSAPG-- 250 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + L + V L G LSQ R+ + GRA +ATD+AA Sbjct: 251 RTVVFTRTKYGAKALARQLNKSGVPAVELHGNLSQGARTRNMDAFHTGRASTLVATDIAA 310 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LV+HA+ + LHRSGRT RAG +G + ++ + R L R A + Sbjct: 311 RGIHVDDVALVVHADPPVEHKAYLHRSGRTARAGARGTVITLMTDDQVRDVRDLTRAAGI 370 >gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp. laumondii TTO1] Length = 434 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 194/373 (52%), Gaps = 6/373 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A+ E+GY T +Q+ + L KD+L SAQTG+GKT F L + L + Sbjct: 18 ILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQRLNDSPIQMK 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA QVG + + V GGVS++ + L+ G I+V Sbjct: 78 GRRPVRALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILVA 137 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D +++S ++ +VLDEAD MLD+GF DI +L+ P KR+ L+FSAT S Sbjct: 138 TPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPPKRQNLLFSATFS 197 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I +LA +D V V +A N I+ V + + ++ + +VF Sbjct: 198 DDIKSLASKLLRDPVSVEVARRNSASEQIEQLVHFVDKKRKGELLSFLIGSRNWQQVLVF 257 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + A+ G SQ R+ AL +DGR RV +ATD+AARG+D+ Sbjct: 258 TRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKDGRIRVLVATDIAARGLDI 317 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVS 366 L V++ EL + E+ +HR GRTGRA G + V V + + ERL RE Sbjct: 318 DQLPYVVNFELPNVAEDYVHRIGRTGRADATGQALSLVCVDEHKLLKDIERLLKREIPRM 377 Query: 367 VV--WEPAPSVEA 377 + +EP P+++A Sbjct: 378 AIPGYEPDPTIKA 390 >gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891] gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891] Length = 419 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 186/340 (54%), Gaps = 3/340 (0%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPASAPLALAIAP 82 T VQ+ + L +DVL AQTG+GKT AFGL + LL +E R ++ LAL + P Sbjct: 27 TEVQKHAIPHVLEGQDVLAGAQTGTGKTAAFGLPIIQRLLESETTRDIQSNDVLALVLVP 86 Query: 83 TRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 TRELA QV + LYA+ ++ V GG S++ + R+L G I++ TPGRL DH+ Sbjct: 87 TRELAQQVFDNIT-LYAQDTIIKVVTAYGGTSMNVQTRNLDQGCDILIATPGRLLDHLFC 145 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201 K +N++ + +VLDEAD MLD+GF DI+ IL ++R+ + FSAT I T+A Sbjct: 146 KNINLTKTQYLVLDEADRMLDMGFMPDIKRILKRCNEERQTMFFSATFDKRIKTIAYKML 205 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 + V V + N + V + + ++ + +VF T+ Sbjct: 206 SEPVEVQVTPSNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVLVFTKTKQGSDALA 265 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 K L + +++G+ SQ R AL + G+ R IATDVAARG+D+ LE V++ ++ Sbjct: 266 KELKLDGIKAASINGDKSQGARQKALDDFKSGQVRALIATDVAARGLDIQQLEQVVNFDM 325 Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 E+ +HR GRTGRAG++G +V ++ ++ + E + R Sbjct: 326 PYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLLEAIER 365 >gi|304391684|ref|ZP_07373626.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130] gi|303295913|gb|EFL90271.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130] Length = 532 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 190/348 (54%), Gaps = 8/348 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ A+ GY T +Q + L +DV+ AQTG+GKT AF L + S L+E Sbjct: 10 PKVLA-AVEASGYTEPTPIQAQAIPEVLNRRDVMGIAQTGTGKTAAFTLPMIS--LSEKG 66 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R + A P L + PTRELA QV + E + VA+ IGG S+ ++ + L GA + Sbjct: 67 R-ARARMPRTLILEPTRELAAQVEQNFEKYAVNHKLNVALLIGGTSMEKQMKILDRGADV 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL D + ++ ++ +V+DEAD MLD+GF DIE I+ P R+ L FSA Sbjct: 126 LIATPGRLLDLFERGRILMNGVEILVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGA 244 T+ P I LA + ++ V+V +A+ ++ + V D R I Sbjct: 186 TMPPIIEKLADQFLQNPVQVMVAAAATTAKTVEQKLVKAPKKDFEKRAKLRDVIDSQDNI 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 KNAI+FC+ + V+ + + + + V +L G++ Q R L RD +A+DVA Sbjct: 246 KNAIIFCNRKVDVATLHRSMTKRGYSVGSLHGDMDQSARMKTLAAFRDNEITHLVASDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351 ARG+D+PD+ V + ++ +P++ +HR GR GRAGR G + FV P + Sbjct: 306 ARGLDIPDVSHVFNYDVPIHPDDYVHRIGRCGRAGRDGWAFTFVTPAD 353 >gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314] gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314] Length = 424 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 179/340 (52%), Gaps = 2/340 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL G + ++QE L L D++ A+TG GKT FG+ L + D Sbjct: 19 ITDALDALGIRHTFAIQEYTLPIALDGHDLIGQARTGMGKTYGFGVPLLDRVFDSADIEE 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELAVQVG +LE + V GG + L+ G +VVG Sbjct: 79 IDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYGGTPYEEQIDALETGVDVVVG 138 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L + + +VLDEADEMLDLGF DIE I+ + K + ++FSAT+ Sbjct: 139 TPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIEKIMRALTHKHQTMLFSATMP 198 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAI 248 I TLA+++ V + S + + R ++ D++ IL+ G I Sbjct: 199 GPILTLARSFLDKPVHIRAESADSAATHATTRQIVFQAHRMDKEAVTARILQARGRGKTI 258 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + ++ + LA F V ++ G++ Q R +L R G+ + +ATDVAARGI Sbjct: 259 IFARTKRTAAQVAEDLAARGFTVGSVHGDMGQPARERSLNAFRSGKIDILVATDVAARGI 318 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ D+ VI+ + +P +HR GRTGRAG G +V ++ Sbjct: 319 DIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLV 358 >gi|84994532|ref|XP_951988.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara] gi|65302149|emb|CAI74256.1| ATP-dependent RNA helicase, putative [Theileria annulata] Length = 455 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 112/338 (33%), Positives = 192/338 (56%), Gaps = 9/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A E G+ T +Q + L KD++ A+TGSGKT AF + + LL + R Sbjct: 55 ACKELGWKTPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQKLLEKPQRL---- 110 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +L +APTREL++Q+ +L L + G+ V + +GG+ + + L HI+VG+PG Sbjct: 111 --FSLILAPTRELSLQIKEQLISL--EIGLDVCLILGGLDMVSQALQLSKKPHIIVGSPG 166 Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 R+ DH++ KG ++ +K +VLDEAD++L F D + I+ S PK + ++SAT++ Sbjct: 167 RIADHLQNTKGFSLETIKYLVLDEADKLLSADFDDSLNKIIISLPKDKVTYLYSATMTSK 226 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 IT L K +++N+ ++ + + + +L+ L + + IL + +VFC+ Sbjct: 227 ITKLQKVTLMKPIQINVNTKYHTNELLIQKYLLIPLKFKYTYLACILWKYSTSTIMVFCN 286 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T + + T L F+ V L G+LSQ +R N+L + G + + TDV +RGID+P Sbjct: 287 TCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGLFNILVVTDVGSRGIDIPF 346 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ++LVI+ ++ + ++ +HR GRT RAG+ G+S+ +I Q Sbjct: 347 VDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQ 384 >gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera] Length = 797 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/352 (34%), Positives = 186/352 (52%), Gaps = 19/352 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFS 70 +A+ GY + +Q A + L+++DV+ A+TGSGKT AF L + + + L + Sbjct: 319 KAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEEN 378 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G +V+ Sbjct: 379 EAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIA 438 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----------- 179 TPGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 439 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEEL 498 Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 R MFSAT+ PA+ LA+ Y ++ V V I + + I +++ S++ Sbjct: 499 DEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMMKESEKMF 558 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + +L G K AIVF +T+ S K L + ++V L G SQ++R +L+ R Sbjct: 559 KLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKSQEQREISLEGFRTK 618 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R V +ATDVA RGID+PD+ VI+ ++ N E HR GRTGRAG+ G++ Sbjct: 619 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 670 >gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383] gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383] Length = 484 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 11/370 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + T A+N Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYADNR-- 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 72 GAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ K +++S+L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT Sbjct: 132 ATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + +A N + + V + + +++R H +V Sbjct: 192 SDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID Sbjct: 252 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365 + L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 312 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 371 Query: 366 SVV--WEPAP 373 V+ +EP P Sbjct: 372 EVIAGFEPDP 381 >gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c] gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c] Length = 446 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 6/367 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALSE+GY T +Q+ + L D+L +AQTG+GKT AFGL + L+A + A Sbjct: 15 ALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQRLMAASSNVG-AG 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L V AV GGV + + L+ G +++ PG Sbjct: 74 KPRALVLTPTRELATQVYDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S + +VLDEAD MLD+GF I+ IL P++ R+ L+FSAT + Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNRQTLLFSATFAEP 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V +AS N I +R V +S + ++++L + +VF Sbjct: 194 IKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLHLLAQDSREQTLVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L ++ + A+ G +Q +R AL + GR V +ATD+AARGID+ Sbjct: 254 TKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-REANVSVV 368 L VI+ +L E+ +HR GRTGR G +G ++ ++ Q + R+ RL R+ ++ V Sbjct: 314 LPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIVRLLDRDMDIRDV 373 Query: 369 WEPAPSV 375 + P V Sbjct: 374 PDFEPQV 380 >gi|327325572|gb|EGE67371.1| ATP-dependent RNA helicase [Propionibacterium acnes HL103PA1] Length = 491 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 26 GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 86 PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ A+ L + Y + V + + + + + A + ++ + I Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATD Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLTAFKDGSLPVLVATD 317 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+ Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377 Query: 363 ANVSVV 368 A V V Sbjct: 378 AGVKPV 383 >gi|118602908|ref|YP_904123.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567847|gb|ABL02652.1| ATP-dependent RNA helicase CsdA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 606 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 193/350 (55%), Gaps = 13/350 (3%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDR 68 I + L GY + +QE + L +D++ AQTG+GKT AF L L + L N Sbjct: 22 TILKVLDAIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFSLPLLDKIDLGIN-- 79 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAH 126 P L + PTRELA+QV ++ YA+ G V GG S + R L+ G H Sbjct: 80 -----MPQLLILTPTRELAIQVSEAVQT-YARGMKGFHVLPIYGGQSYDIQLRPLKRGVH 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VGTPGR+ DHI+ L + HLK+ VLDEADEML +GF DDI++I+ P++R++ +FS Sbjct: 134 AIVGTPGRVMDHIKKGTLKLDHLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIALFS 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245 AT+ I +A+ + V I ++ + I + +V LS + A+ IL Sbjct: 194 ATMPSVIKKVAEQFLNQPKIVKIKTKTETATTITQKYCMVGGLSQKLEALTRILEVTTFD 253 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + + L+ F A++G++ Q +R + + G+ + IATDVAA Sbjct: 254 AMIIFVRTKTLTTELAEKLSARGFSAEAINGDIQQNQRERIITNYKKGKIDILIATDVAA 313 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 RG+D+ + V++ ++ + E+ +HR GRTGRAGRKG ++ + N +RR Sbjct: 314 RGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGDAILFV-SNRERR 362 >gi|158259303|dbj|BAF85610.1| unnamed protein product [Homo sapiens] Length = 820 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/372 (32%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S R H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGRPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51] gi|118595827|sp|Q2H1Q8|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3 gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51] Length = 493 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/353 (33%), Positives = 198/353 (56%), Gaps = 10/353 (2%) Query: 2 KIFENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F+++ V + +A E G+ T +Q+ + L+++D++ A+TGSGKT AF L + Sbjct: 65 KTFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPIL 124 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 LL D+ P AL +APTRELA Q+ + E L + + A+ +GG+ + ++ Sbjct: 125 QALL---DKPQPL---FALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAI 178 Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L H+VV TPGRL DH+ + KG ++ +L+ +V+DEAD +LD+ F ++ IL P+ Sbjct: 179 ALGKKPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLPR 238 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVN 237 +RR +FSAT+S + +L + +D ++V+I+S Q S + V + + +D ++ Sbjct: 239 ERRTFLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHKDTYLIY 298 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + + I+F T R +L + L G LSQ R AL R G + Sbjct: 299 LCNEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDI 358 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +ATDVAARG+D+P+++ V++ +L + + +HR GRT RAGR G ++ + Q Sbjct: 359 LVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQ 411 >gi|88800218|ref|ZP_01115786.1| ATP-dependent RNA helicase [Reinekea sp. MED297] gi|88777064|gb|EAR08271.1| ATP-dependent RNA helicase [Reinekea sp. MED297] Length = 534 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 3/342 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + A+ E GY + +Q L L D + AQTG+GKT AF + + LL Sbjct: 34 LPIALMRAIQEVGYEYCSPIQAMTLPYALAGHDCIGKAQTGTGKTAAFLITAITDLLEHR 93 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGA 125 P AL +APTRELA+Q+ + + L + + VA +GG+ ++++ L + Sbjct: 94 LEEQYVGEPRALILAPTRELALQIAEDAKALTKYSRLKVAAVVGGMDFDKQKQQLHEQRT 153 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183 I+V TPGRL D + K + + ++ +++DEAD MLD+GF DI+ I+ ++P+ R+ L Sbjct: 154 DILVATPGRLIDFMNRKAVFLDQIEMLIIDEADRMLDMGFIPDIKTIVRATPRTENRQTL 213 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S I LA+ + D VRV + + + D++ LV+ ++ + I+R Sbjct: 214 LFSATFSQDILNLAQRWTNDPVRVEVEPKVKTAEDVEQHVYLVSSEEKYPVLRRIVRQDE 273 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 A +VF + R V + L + LSG++ Q +R L ++G+ V +ATDV Sbjct: 274 ADRVMVFANRRDIVRDLAENLKKDGIPCQVLSGDVPQNKRIRTLDGFKEGKFEVLVATDV 333 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 A RGI + + VI+ L +PE+ +HR GRTGRAG+KG+S+ Sbjct: 334 AGRGIHVDGVSHVINFTLPEDPEDYVHRIGRTGRAGKKGVSI 375 >gi|314964947|gb|EFT09046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2] gi|315093752|gb|EFT65728.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1] Length = 491 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 26 GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 86 PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ A+ L + Y + V + + + + + A + ++ + I Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATD Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLTAFKDGSLPVLVATD 317 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+ Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377 Query: 363 ANVSVV 368 A V V Sbjct: 378 AGVKPV 383 >gi|266619670|ref|ZP_06112605.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479] gi|288868767|gb|EFD01066.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479] Length = 483 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 15/377 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I AL GY T +Q ++ L ++V ++TG+GKT AFG+ L ++ E + Sbjct: 17 PEII-HALDLLGYQEPTEIQREVIPAVLEGRNVAARSRTGTGKTAAFGIPLCEKIVWEEN 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + P+RELAVQV EL + + + V GG + ++ R ++ +HI Sbjct: 76 ------LPQALVLEPSRELAVQVSNELFHIGRRKRLKVPAVFGGFPIDKQMRTIKQKSHI 129 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ D I+ + L ++ ++ +V+DEAD MLD+GF ++++ I+ PK R+L+FSA Sbjct: 130 VVGTPGRVMDLIQRECLKLAGIRYLVIDEADLMLDMGFLEEVKQIMALLPKGGRVLLFSA 189 Query: 188 TISPAITTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 T+ + L Y DAV + A E S + YRA ++ + + L Sbjct: 190 TLDEKVRLLVDEYMADAVMIAPEPDAEEEPAISQVVYRA---DPEEKYDLLKRTLILENP 246 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++ ++FC TR V+ + L + GE+ Q+ER + R G R IATDVA Sbjct: 247 ESCMIFCGTREMVNVLLQKLKRDRIFCGMIHGEMEQRERLKTVDAFRRGGFRFLIATDVA 306 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FRE 362 ARGID ++LV++ + E +HR GRTGR G G +V ++ ++ +R + + Sbjct: 307 ARGIDFDKIDLVVNYDFPGGRETYVHRIGRTGRNGENGRAVSLLCESEERMLHMVEAYMG 366 Query: 363 ANVSVVWEPAPSVEAIR 379 +SV P P EA + Sbjct: 367 RELSVTTCPEPDEEATK 383 >gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD2M] gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD2] gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD2] gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD2M] Length = 480 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 198/371 (53%), Gaps = 7/371 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + L + S Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSA 73 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL + PTRELA QV + + V GGVS++ + L+ G IVV T Sbjct: 74 KRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT S Sbjct: 134 PGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSD 193 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + + +A N + + V + + +++R H +VF Sbjct: 194 EIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID+ Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDID 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367 L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE V Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREV 373 Query: 368 V--WEPAPSVE 376 + +EP P+ + Sbjct: 374 IAGFEPDPNAK 384 >gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196] gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC 25196] Length = 472 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/343 (37%), Positives = 193/343 (56%), Gaps = 6/343 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ +I +A+++ GY + T +QE + L DVL SAQTG+GKT AF L L + Sbjct: 7 NLHPLILKAINDAGYTSPTPIQEQAIPELLTGHDVLASAQTGTGKTAAFMLPALHRLASP 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123 + S P L + PTRELA+QV E Y K V +GG+ + + L Sbjct: 67 SQVRS--RGPRVLVLTPTRELALQVS-EATAKYGKYLPRAKVVSILGGMPYPLQNKLLSQ 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 I+V TPGRL DHI+ ++ S L+ +VLDEAD MLD+GF +D+E I ++P R+ L Sbjct: 124 VVDILVATPGRLIDHIQRGRIDFSRLEMLVLDEADRMLDMGFIEDVERIASATPATRQTL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYH 242 +FSAT+ A+ +A R+ +A+ + ++I+ R V +S ++ + ++LR Sbjct: 184 LFSATLDSAMDNVAARLLNSPKRIQVATSKARLNNIEQRLHYVDDISHKNQLLDHLLRDI 243 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K AIVF +T+ L+ AL G++SQ++R+ L +R G RV +ATD Sbjct: 244 ELKQAIVFTATKRDADMLADGLSAQGHAAAALHGDMSQRDRNRTLIKLRQGGIRVLVATD 303 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARGID+ + VI+ +L E+ +HR GRTGRAG G++V Sbjct: 304 VAARGIDVAGITHVINFDLPKFAEDYVHRIGRTGRAGASGIAV 346 >gi|326430346|gb|EGD75916.1| ATP-dependent RNA helicase RhlE [Salpingoeca sp. ATCC 50818] Length = 2578 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 194/353 (54%), Gaps = 13/353 (3%) Query: 5 ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL- 63 + + +V+ +A + GY T VQEA + P L KD++ A+TGSGKT AF L + +L+ Sbjct: 2159 QGLEEVLCQACEDVGYRRPTPVQEAAIPPALEGKDIVGIAKTGSGKTAAFALPVMHSLIN 2218 Query: 64 --AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 RF AL +APTRELA Q+ E + L A G+ A+ +GG+S+ +++ L Sbjct: 2219 ARPRERRFH------ALVMAPTRELAQQIEGEFKALGATIGLKTALLVGGLSLQQQQDRL 2272 Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 H+++ TPGR+ H+ R G ++++K ++LDEAD ML F +I+ +L PK+R Sbjct: 2273 SQNPHVLIATPGRILHHLERTNGFKLNNVKFLILDEADRMLTPEFEREIDQLLGHIPKRR 2332 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 +FSAT + + L ++ V + I + + +D V + L ++ +V L+ Sbjct: 2333 TNFLFSATSNDKVKHLMHAVLRNPVHIKIKHKVKTVDTLDQHCVFLPLQFKETYLVWFLQ 2392 Query: 241 YHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 G + + I+FC T+ + + +L + + L G +SQ++R AL + + V Sbjct: 2393 RQGLQADSSVIIFCETKRATMKLVLMLRKLGLRATCLHGNMSQEKRIGALARFKTHKDNV 2452 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + T+V ARG+D+ +ELVI+ +L + LHR GRT RAGR G +V + Q Sbjct: 2453 LVCTNVGARGLDIQGVELVINYDLPKTSDVYLHRVGRTARAGRSGRAVTFVTQ 2505 >gi|325527064|gb|EGD04490.1| ATP-dependent RNA helicase [Burkholderia sp. TJI49] Length = 391 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 162/276 (58%) Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 + PTRELA QV + T + AV GGV ++ + +L+ G I++ TPGRL DH+ Sbjct: 1 LTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHV 60 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 + K N+ ++ +VLDEAD MLD+GF D++ IL+ PK+R+ L+FSAT SP I LA Sbjct: 61 QQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLAST 120 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259 Y ++ + +A N ++++ VA D+ A+V +LR G K IVFC+++ SR Sbjct: 121 YLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASR 180 Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 + L A+ G+ SQ ER AL + G +ATDVAARG+D+ +L VI+ Sbjct: 181 LARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINF 240 Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 +L N E+ +HR GRTGRAG G ++ + N +++ Sbjct: 241 DLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 276 >gi|170720088|ref|YP_001747776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida W619] gi|169758091|gb|ACA71407.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619] Length = 483 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 185/338 (54%), Gaps = 8/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70 A+ + G+ T +Q +L LR KD + AQTG+GKT AF +++ S L +R+ Sbjct: 108 AIHDLGFPYCTPIQAQVLGYTLRGKDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERY- 166 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129 P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ I+V Sbjct: 167 -MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKTLEARHCDILV 225 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187 TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K R+ L+FSA Sbjct: 226 ATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA 285 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T + + LAK + D V I EN ++ VA SD+ + N++ + + Sbjct: 286 TFTDDVMNLAKQWTTDPAIVEIEPENVASETVEQHVFAVAGSDKYKLLYNLVTQNKWERV 345 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF + + V R + L LSG++ Q +R L+ R+GR V +ATDVA RG Sbjct: 346 MVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRG 405 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 I + + VI+ L +P++ +HR GRTGRAG G+S+ Sbjct: 406 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSI 443 >gi|126642301|ref|YP_001085285.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ATCC 17978] Length = 358 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/329 (34%), Positives = 190/329 (57%), Gaps = 8/329 (2%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFSPASAPLALA 79 +T +Q+ +L L D + AQTG+GKT AF +++ + LL + RF P AL Sbjct: 1 MTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNNPVQEQRFR--GEPRALI 58 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCDH 138 +APTRELA+Q+ + + L + + + +GGV ++++ L N I+V TPGRL D Sbjct: 59 LAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMVATPGRLIDF 118 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTL 196 + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K R+ LMFSAT S + L Sbjct: 119 VEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSATFSYDVLNL 178 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 A+ + + V V I E + ++D++ R +VA D+ + +ILR ++F + R Sbjct: 179 ARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDILREEPIDKVMIFANRRDQ 238 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 V R L + ++V LSGE++Q +R L+ + G+ + IATDVA RGI + + V Sbjct: 239 VRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMIATDVAGRGIHVDGVSHV 298 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++ L ++ +HR GRTGRAG +G+S+ Sbjct: 299 VNFTLPEQSDDYVHRIGRTGRAGAQGVSI 327 >gi|290559021|gb|EFD92400.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 434 Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 111/343 (32%), Positives = 192/343 (55%), Gaps = 8/343 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I ++L+ G+ T VQ+ + P L +DV+V ++TGSGKT AF + + + L Sbjct: 6 NIKKEIVDSLNAMGFKEPTEVQKQAIPPGLEGRDVIVKSKTGSGKTAAFLIPIINNL--- 62 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P A+ I PTRELA+QV + + G+ GG S++ + ++ G Sbjct: 63 ----KKSHYPSAMVIVPTRELAMQVTDVAKQIGHNIGIRTFTVYGGASINIQIEAIRAGV 118 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +I+VGTPGR+ D I+ L +K +VLDE D MLD+GF DD+++IL P++++ + F Sbjct: 119 NIIVGTPGRVIDLIKRGELPTDQIKFLVLDEFDIMLDMGFIDDVKYILSKIPQEKQTMFF 178 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SATI I + Y K+ + +NI S+ I++ + ++D+ ++ + K Sbjct: 179 SATIPSEIRAVTNKYTKNPIIINIDSKEVTVDTIEHYYSIARVADKFLTLLAYIDTKKPK 238 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +IVFC T+ + R +L + V + G LSQ R ++L + + G + IAT+VA+ Sbjct: 239 KSIVFCRTQINAERIHTILRKVGIPAVLMHGGLSQSRREHSLSLFKSG-TEMLIATNVAS 297 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RG+D+ ++ +I+ + +P+ +HR GRT R G+ G + ++ Sbjct: 298 RGLDIDNVSDIINFDAEEDPKAYVHRVGRTARMGKSGRAFTIL 340 >gi|159040018|ref|YP_001539271.1| DEAD/DEAH box helicase domain-containing protein [Salinispora arenicola CNS-205] gi|157918853|gb|ABW00281.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola CNS-205] Length = 469 Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 190/351 (54%), Gaps = 7/351 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +PQ + AL+ +G +Q A + L +DVL QTGSGKT+AFGL L + L A+ Sbjct: 23 GLPQPLVRALARQGITAPFEIQRATMPDALAGRDVLGRGQTGSGKTLAFGLPLLARL-AD 81 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R P P AL + PTRELA+QV L L GV + +GGV R+ L+ G Sbjct: 82 GERARPRH-PRALVLVPTRELAMQVSDALFPLGRTIGVFLRTAVGGVPYDRQISALRRGV 140 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL D I + ++ VLDEAD+M D+GF ++ +L +P + L+F Sbjct: 141 EVLVATPGRLADLIERGVCRLDDIEVTVLDEADQMADMGFLPEVTELLAKTPADAQRLLF 200 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + + D V + A + +D+ +L+ D+ + + +I G Sbjct: 201 SATLDGDVDALVRRFMTDPVTHSTAPPTAAVTTMDHHLLLIPPHDKFSVVASIAAREG-- 258 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ V R + LA + L G +Q+ R+ L R+GR V +ATDVAA Sbjct: 259 RTMVFARTQLGVDRLVQQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRMNVLVATDVAA 318 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRR 355 RGI + + LV+H + +P++ LHR+GRT RAG G ++ +P+ QRR Sbjct: 319 RGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGEAGAVATLALPK--QRR 367 >gi|67468731|ref|XP_650379.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS] gi|56466997|gb|EAL44993.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS] Length = 542 Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/394 (32%), Positives = 213/394 (54%), Gaps = 7/394 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I +AL E GY +T++Q + L KD++ A+TGSGKT+AF + + L Sbjct: 87 NLSEEIQKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIVEIL--N 144 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 F + A+ I+PTRELA+Q LE + A + + IGG S +E L+ GA Sbjct: 145 KIHFQTRNGTGAIIISPTRELAIQTFDVLEKILAHSERTRTLIIGGSSKKKEEEALKKGA 204 Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVV TPGRL DHI K +LK +V+DEAD ++++GF +++ IL+ PK R+ ++ Sbjct: 205 SIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNRQTML 264 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYH 242 FSAT S + +A K V +N+ S++ S ++ VL+ DR + LR + Sbjct: 265 FSATQSEKVDDIANISLKQPVVINVESQSTISTSSKLEQGYVLIEAKDRFRLLYTFLRKN 324 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K IVF S+ +V ++ +L V AL G+L Q +R+ + + I TD Sbjct: 325 KNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKEAILITTD 384 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 +AARG+D+P ++ +I +L +P++ +HR GRT RA KG ++ + R E L E Sbjct: 385 IAARGLDIPAVDWIIQVDLPDSPKDYIHRVGRTARADTKGRALLFVQPCEIRILEYLKGE 444 Query: 363 ANVSVVWE-PAPSVEAIRERDAQRILQDPLFLDS 395 +E P + I +R+ +++++ +L++ Sbjct: 445 KIPLTQYEVPEKKIANI-QRELEKLVEKNYYLNT 477 >gi|167041353|gb|ABZ06107.1| putative DEAD/DEAH box helicase [uncultured marine microorganism HF4000_005I08] Length = 416 Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 182/331 (54%), Gaps = 3/331 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ Q I A+++ GY T +Q + P L +D+L AQTG+GKT AF L L L A+ Sbjct: 8 DLAQPILRAIADEGYTTPTPIQGKSIPPLLEGRDLLGVAQTGTGKTAAFALPLLHRL-AD 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N S PLAL +APTRELA Q+G + V GGVS+ R+ + L G Sbjct: 67 NAGKSHPRQPLALILAPTRELAGQIGDSFRTYGRHLRLRTGVVFGGVSIRRQIQTLARGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H++V TPGRL D + L + ++ +LDEAD MLD+GF D++ I + PK+R+ L+F Sbjct: 127 HVLVATPGRLIDLMNRGDLRLDAVEVFILDEADRMLDMGFIRDVKKITAALPKRRQTLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGA 244 SAT+ ++ LA + + VRV A + +D + VL D+ A++ +L Sbjct: 187 SATMPKSVQGLAADLLSNPVRVEAAPASTTVEKVD-QMVLFVPKDKKRALLGELLNDKDM 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++F T+ +R + L + A+ G +Q R AL R GR R +ATD+A Sbjct: 246 ARVLIFTRTKHGANRVARYLHDRGIHSDAIHGNKAQNARQRALDGFRSGRIRALVATDIA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRT 335 ARGID+ + VI+ +L ++PE+ +HR GRT Sbjct: 306 ARGIDVEGVTHVINFDLPNDPESYVHRIGRT 336 >gi|159465205|ref|XP_001690813.1| predicted protein [Chlamydomonas reinhardtii] gi|158279499|gb|EDP05259.1| predicted protein [Chlamydomonas reinhardtii] Length = 446 Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 113/341 (33%), Positives = 188/341 (55%), Gaps = 7/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + EA + G+ + +QE + L +DV+ AQTGSGKT AF L + L+ + Sbjct: 28 LAEAAAGLGWKAPSHIQEQAIPHLLAGQDVIGLAQTGSGKTGAFSLPILQALMDKPQEH- 86 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL ++PTRELA+Q+ ++E L + GV V +GG+ + + L H++VG Sbjct: 87 -----FALILSPTRELAIQIAEQVEALGSGIGVKSCVLVGGIDMMAQAIALAKRPHVLVG 141 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGR+ DH+ KG ++ LK +VLDEAD++LD+ F +I+ IL P++RR +FSAT+ Sbjct: 142 TPGRVVDHLSNTKGFSLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRERRTQLFSATM 201 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + + L + V++ +A + + + V + +D + ++ ++ Sbjct: 202 TNKVQKLQRACLDKPVKIEVAHKYSTVDTLRQQYVFIPAKYKDCYLAYVINELSGSTFMI 261 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T S R +L F V + G +SQ +R AL + G + +ATDVA+RG+D Sbjct: 262 FTRTCESTRRIALLLRNLGFGAVPIHGHMSQPKRLGALNKFKSGERNILVATDVASRGLD 321 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +P +++VI+ ++ N ++ +HR GRT RAGR G SV ++ Q Sbjct: 322 IPSVDVVINFDVPQNSKDYVHRVGRTARAGRSGRSVTIVTQ 362 >gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1] gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum AMB-1] Length = 583 Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 190/342 (55%), Gaps = 7/342 (2%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE++ P+++ +AL+E GY + T +Q + L +DVL AQTG+GKT +F L + Sbjct: 40 FEDLGLGPEIL-KALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIE 98 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L A + A P +L +APTRELA QV + + A+ IGG S+ + Sbjct: 99 ILAAGRAK---ARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVAL 155 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G +++ TPGRL D + ++ +K +V+DEAD MLD+GF D+E I+ PK R Sbjct: 156 LDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKIR 215 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L FSAT+ P I LA + + V +++ + + +V D+ + +++R Sbjct: 216 QTLFFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQALAVVEEIDKRETLRHLIR 275 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KNA +FC+ + V + L +H F VV L G+++Q R L+ + G AR+ + Sbjct: 276 IEEVKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEARLMVC 335 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 +DVAARGID+ + V + ++ + E+ +HR GRTGRAG +G Sbjct: 336 SDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEG 377 >gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 551 Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/332 (35%), Positives = 177/332 (53%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL E GYV+ T +Q L P + +D+ AQTG+GKT AF L + L EN R +P Sbjct: 54 ALGEAGYVSPTPIQTQALPPAMEGRDLCGIAQTGTGKTAAFALPILHRLSLENRR-APRR 112 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L ++PTRELA Q+ V GGV++ R+ R + G I+V TPG Sbjct: 113 GCRVLVLSPTRELASQIAESFSDYGRHLPYTSTVVFGGVNISRQERAIAPGVDILVATPG 172 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + L + ++ +VLDEAD+MLDLGF ++ I+ P +R+ L FSAT+ I Sbjct: 173 RLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQSLFFSATMPKNI 232 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA Y + V+V + +D + + + + ++LR + +VF T Sbjct: 233 AGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVLVFTRT 292 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R + L + A+ G SQ +R AL RDG RV +ATD+AARGID+ + Sbjct: 293 KHGADRVVRGLDKVGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDVEGV 352 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V++ +L + PE+ +HR GRT RAG +G ++ Sbjct: 353 THVVNYDLPNVPESYVHRIGRTARAGAEGQAI 384 >gi|27376558|ref|NP_768087.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110] gi|27349699|dbj|BAC46712.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110] Length = 530 Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 179/340 (52%), Gaps = 1/340 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I ALSE YV T +Q + L +DV+ AQTG+GKT +F L + LL + Sbjct: 25 EPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILHRLLEHRIK 84 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P + + L ++PTREL+ Q+ + + IGGV + R+ R L G ++ Sbjct: 85 PQPKTTRV-LVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLMQGVEVL 143 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D ++ GL + ++ +VLDEAD MLD+GF +DI I+ P KR+ L FSAT Sbjct: 144 VATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSAT 203 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA + +D RV + + I+ R + V S + + +L+ A+ Sbjct: 204 MPKDIAELADSMLRDPARVAVTPVSSTAERINQRILQVDFSAKPAFLTKLLKDEPINRAL 263 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ + K L + A+ G SQ R L R G R +ATD+AARGI Sbjct: 264 VFTRTKHGADKVVKTLEKAGIAASAIHGNKSQNHRERTLAQFRSGDIRTLVATDIAARGI 323 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ + VI+ +L + PE +HR GRT RAG +G ++ ++ Sbjct: 324 DVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLV 363 >gi|242093508|ref|XP_002437244.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor] gi|241915467|gb|EER88611.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor] Length = 567 Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/354 (34%), Positives = 189/354 (53%), Gaps = 27/354 (7%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA------------EN 66 GY N T VQ + + +D++ AQTGSGKT AF L + S L+ Sbjct: 75 GYDNPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSGLVVPPAGGGSGYGYGRR 134 Query: 67 DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 DR F + P AL +APTRELA Q+ E +TG+ V V GG ++ + RDL+ G Sbjct: 135 DRGSFDRVAKPRALVLAPTRELAAQINEEARKFSFQTGLRVVVAYGGTPMYNQLRDLERG 194 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--R 180 ++V TPGRL D + +++ +K +V+DEAD MLD+GF I I+D + PKK R Sbjct: 195 VDLLVATPGRLVDMVERSRISLEGIKYLVMDEADRMLDMGFEPQIRKIVDMMNMPKKSVR 254 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT P I LA ++ + + V + I+ + V ++ ++++L+ Sbjct: 255 QTMLFSATFPPEIQRLASDFLYNYIFVTVGRVGSSTDLIEQKLEFVNDGEKRGFLIDLLQ 314 Query: 241 YHGAKNA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 A A +VF T+ L F A+ G+ +QQER +AL+ + Sbjct: 315 KQSAGVANSKLQQPLTLVFVETKREADSLRYFLQSKGFPATAIHGDRTQQERESALKSFK 374 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G + +ATDVA+RG+D+P++ VI+ +L + E+ +HR GRTGRAG+ G++ Sbjct: 375 SGTTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGIAT 428 >gi|15892943|ref|NP_360657.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7] gi|15620136|gb|AAL03558.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7] Length = 414 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 5 MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 63 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 64 SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFIQ 115 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P+KR Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I +++ Y + VR+ + + N+ ++I ++ V+ ++ +A+ L Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLG 235 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + I+F T+ S + K+L A+ G+LSQ++R + R R+ +A Sbjct: 236 NREG-SVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 294 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 295 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 349 >gi|320037892|gb|EFW19828.1| ATP-dependent RNA helicase dbp3 [Coccidioides posadasii str. Silveira] Length = 512 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/317 (37%), Positives = 189/317 (59%), Gaps = 11/317 (3%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 +D++ A+TGSGKT+AFGL +L N+ + + P AL I PTRELAVQ+ +L Sbjct: 134 RDLIGVAETGSGKTLAFGLPCLRRVLELNNSET-SCKPCALIITPTRELAVQIYDQLLRF 192 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + V +A GG +RR+++N A +V+ TPGRL D + +N+S +K +VLDEA Sbjct: 193 SSVVDVGIACIYGGSPKDHQRREIRN-ASVVIATPGRLKDFQADQTINLSGVKYLVLDEA 251 Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI--ASEN 213 D MLD GF DI+ I+ P +KR+ +MF+AT + LA ++ K+ V V I +S+ Sbjct: 252 DRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDI 311 Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAEHL 268 R + I ++ ++D+ ++ +LR + GAKN +VFC + R + + Sbjct: 312 RANKRIKQIVEVLQPYEKDSRLLELLRRYQDGAKNNHRILVFCLYKKEAMRVERFIGSKG 371 Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328 F+V + G++SQ ER +L+ + G + +ATDVAARG+D+P ++LV++ E+ Sbjct: 372 FKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDY 431 Query: 329 LHRSGRTGRAGRKGMSV 345 +HR GRTGRAG +G+++ Sbjct: 432 VHRIGRTGRAGAEGLAI 448 >gi|330952956|gb|EGH53216.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae Cit 7] Length = 442 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P S Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 I-RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|314924108|gb|EFS87939.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1] gi|314982201|gb|EFT26294.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3] gi|315103937|gb|EFT75913.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2] gi|315106118|gb|EFT78094.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1] Length = 491 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 26 GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 86 PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ A+ L + Y + V + + + + + A + ++ + I Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATD Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+ Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377 Query: 363 ANVSVV 368 A V V Sbjct: 378 AGVKPV 383 >gi|302833407|ref|XP_002948267.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f. nagariensis] gi|300266487|gb|EFJ50674.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f. nagariensis] Length = 410 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 189/341 (55%), Gaps = 10/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + EA + G+ + +++QE + L+ +DV+ AQTGSGKT AF L + L+ Sbjct: 10 LAEAAAGLGWKSPSNIQEQAIPHLLQGQDVIGLAQTGSGKTGAFSLPILQALMERPQEH- 68 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL ++PTRELA+Q+ ++E L + GV AV +GG+ + + L HI+VG Sbjct: 69 -----FALILSPTRELAIQIAEQVEALGSGIGVKCAVLVGGIDMMAQAIALAKRPHILVG 123 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGR+ DH+ KG N+ LK +VLDEAD++LD+ F +I+ IL P+ RR +FSAT+ Sbjct: 124 TPGRVVDHLSNTKGFNLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRDRRTQLFSATM 183 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + + L + V+V +A++ + + V + +D + +L ++ Sbjct: 184 TNKVQKLQRACLVRPVKVEVAAKYSTVETLRQQYVFIPAKYKDCYLAYVLNELSGSTFMI 243 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T S R +L F V + G +SQ +R AL + G + ATDVA+RG+D Sbjct: 244 FTRTCESTRRIALMLRNLGFGAVPIHGHMSQPKRLGALNKFKAGERSILAATDVASRGLD 303 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +P +++VI+ + N ++ +HR GRT RAGR G SV ++ Q Sbjct: 304 IPSVDVVINYD---NSKDYIHRVGRTARAGRSGRSVTIVTQ 341 >gi|297622829|ref|YP_003704263.1| DEAD/DEAH box helicase domain-containing protein [Truepera radiovictrix DSM 17093] gi|297164009|gb|ADI13720.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM 17093] Length = 442 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/353 (36%), Positives = 188/353 (53%), Gaps = 11/353 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L GY T +Q A + L +D+L AQTG+GKT AF L L L+ P Sbjct: 19 QGLQAAGYTTPTPIQRAAIPAALAGRDLLGLAQTGTGKTAAFVLPLLHRLMD-----GPR 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S AL +APTRELA Q+ E+ L TG+ A GGV + + R L+ GA I+V P Sbjct: 74 SCVRALVVAPTRELAEQIHGEIGVLGRATGLRSATVYGGVGMAPQARALRGGAEIIVACP 133 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ RG G ++ L+ +VLDEAD M D+GF + ++ P+ + L+FSAT+ P Sbjct: 134 GRLLDHLERGTG-TLAKLEVLVLDEADHMFDMGFLPAVRKLVGRVPEGAQRLLFSATMPP 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + LA+ + V + I + + + VA + + ++LR+H ++A+VF Sbjct: 193 ELRRLAEALLRAPVTLQI-GRTEAAATVSHALYPVAREQKTALLKHLLRHHDIRSALVFT 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ R + L F +L G LSQ +R AL R G V +ATD+AARGID+ Sbjct: 252 RTKRGAKRLAESLERDNFFATSLQGNLSQTKRQKALDAFRAGEVHVLVATDIAARGIDVA 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFR 361 + V + ++ + E HR GRTGRA R G + FV P + + R+ ER + Sbjct: 312 RVSHVFNYDVPTTAEAYTHRIGRTGRAARTGEACTFVTPDDEGVVRQIERALK 364 >gi|227822942|ref|YP_002826914.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234] gi|227341943|gb|ACP26161.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234] Length = 520 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 200/373 (53%), Gaps = 6/373 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I LS G+ T +Q + L+ D++ AQTG+GKT AFGL + L+A+ R Sbjct: 21 QQILATLSANGFEKPTPIQAQAIPLVLKGHDLIGLAQTGTGKTAAFGLPMIEKLVADGKR 80 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P + AL +APTREL Q+ L+ K+ + V V +GGVS++++ L G I+ Sbjct: 81 PDPRNI-RALVLAPTRELVNQIATNLKLFVKKSPLKVGVVVGGVSINKQTEQLARGVDIL 139 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + K + ++ + +VLDEAD+MLDLGF D+ I PK R+ L+FSAT Sbjct: 140 VATPGRLLDLVARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSAT 199 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247 + I LA Y D V+V + + ++ V D I+ L + + Sbjct: 200 MPKQIAELAGEYLTDPVKVEVTPPGKAADKVEQYVHFVPGKDLKTTILKQSLTNNPDGLS 259 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ + K L F+ ++ G SQ +R AL+ RDG RV +ATDVAARG Sbjct: 260 LVFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKGFRDGEIRVLVATDVAARG 319 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREAN 364 ID+P + V + +L P+ +HR GRT R GR G+++ F P ++ R E+L Sbjct: 320 IDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEKLM-GIQ 378 Query: 365 VSVVWEPAPSVEA 377 ++V APS +A Sbjct: 379 IAVASGEAPSDQA 391 >gi|77359594|ref|YP_339169.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125] gi|76874505|emb|CAI85726.1| putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein family [Pseudoalteromonas haloplanktis TAC125] Length = 432 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/377 (33%), Positives = 206/377 (54%), Gaps = 12/377 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ ++ A+ + Y T++Q + P L DV+ SAQTG+GKT AF L L LL Sbjct: 27 NLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLLHKLLNT 86 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P A + + + PTRELA QV E T + A+ GG S+ + + L++ A Sbjct: 87 PKKDEPGVARVVI-LTPTRELAQQVFASFEKYAQGTNIKGALAYGGASIGPQIKALKD-A 144 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DHI + +S + ++V DEAD MLD+GF D+I+ IL P R+ L+F Sbjct: 145 QVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPGDRQTLLF 204 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIV-NILRYHG 243 SAT ++ L+K K+ V + + R + ++ V+ ++ DR +V +++ Sbjct: 205 SATFDDSVFALSKKLLKNPELVEV--DKRNSAAVEVEQVIYSVDEDRKRELVSHMIGMKN 262 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F T+ + K + + + ++ G+ SQ R ALQ ++G RV +ATDV Sbjct: 263 WRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVLVATDV 322 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FR 361 AARG+D+P L VI+ EL E+ +HR GRTGRAG +G+++ ++ + Q E + Sbjct: 323 AARGLDIPTLRFVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQWLLEEIEVLL 382 Query: 362 EANVSVVW----EPAPS 374 + ++ W EP P+ Sbjct: 383 DTRLTPQWLAGYEPDPN 399 >gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 433 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 195/354 (55%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+S+ GY +T +Q+ + R +DVL SAQTG+GKT AF L + ++ Sbjct: 6 FSFSPEIL-RAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 EN + S L + PTRELA QV + V GGV + + + L+ Sbjct: 65 -ENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA ++V TPGRL +H+ L++S++ +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + V+ + S ++Q++ D + +V ++ + G Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG 240 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KN +VF +TR + K L + G+ Q R AL+ G RV +A Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+P LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354 >gi|304410127|ref|ZP_07391746.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307302161|ref|ZP_07581919.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304351536|gb|EFM15935.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306914199|gb|EFN44620.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 433 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 195/354 (55%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+S+ GY +T +Q+ + R +DVL SAQTG+GKT AF L + ++ Sbjct: 6 FSFSPEIL-RAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 EN + S L + PTRELA QV + V GGV + + + L+ Sbjct: 65 -ENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA ++V TPGRL +H+ L++S++ +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + V+ + S ++Q++ D + +V ++ + G Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG 240 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KN +VF +TR + K L + G+ Q R AL+ G RV +A Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+P LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354 >gi|152986038|ref|YP_001347685.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7] gi|150961196|gb|ABR83221.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7] Length = 553 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 199/344 (57%), Gaps = 12/344 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ A++ GY + +Q + L D++ AQTG+GKT AF L L S Sbjct: 15 PNVLA-AITAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLS------- 66 Query: 68 RFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124 R P+ P L + PTRELA+QV E Y+K GV V GG + + + L+ G Sbjct: 67 RIDPSRREPQMLVLVPTRELALQVATACET-YSKQLPGVGVVAVYGGAPMGPQLKALRQG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A I+V TPGRLCDH+R ++ ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++ Sbjct: 126 AQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ +I +A+ + K V IA++ + + I+ ++V + +I +L Sbjct: 186 FSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQF 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I F T+ + + ++L ++ AL+G++ Q +R ++ ++DG + IATDVA Sbjct: 246 DALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARG+D+P + V++ ++ +PE+ +HR GRTGRAGR+G ++ ++ Sbjct: 306 ARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLV 349 >gi|115730751|ref|XP_786504.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a [Strongylocentrotus purpuratus] gi|115943987|ref|XP_001179633.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a [Strongylocentrotus purpuratus] Length = 657 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/383 (33%), Positives = 207/383 (54%), Gaps = 25/383 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+ I E L +G L +Q P DV+ A+TG+GKT++F L L Sbjct: 111 PKTI-EKLHAKGVKYLFPIQAQTFKPIDDGFDVIAQARTGTGKTLSFVLPLVEKW----Q 165 Query: 68 RFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 +F S P+ LA+APTRELA Q+ E+ A + CI GG S + ++ G Sbjct: 166 QFPQKSGRQPIILALAPTRELAKQIS---EYFEAIGPHLSTTCIYGGTSYWPQESAIRRG 222 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL------DSSPK 178 +VVGTPGR+ D+IR L++S LK VVLDE D MLD+GF + +E IL + +P Sbjct: 223 LDVVVGTPGRILDYIRKNTLDLSKLKHVVLDEVDRMLDMGFAESVEEILGAAYKTEEAPN 282 Query: 179 KRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAI 235 + L+FSAT+ P + A Y +KD +V++ +R + + + A+ + DR I Sbjct: 283 NPQTLLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTATTVQHLAINCSYFDRPQVI 342 Query: 236 VNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 ++++ +G + +VFC T+ + + ++ + + G++ Q +R L+ R+G Sbjct: 343 SDVIKVYGGLDGRCMVFCETKRDANELA-MSSDVKQETQVMHGDIPQTQREVTLKGFREG 401 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + + + TDVAARG+D+P+++LVI + ++ +HRSGRTGRAGR G+ V + + Sbjct: 402 KFQCLVTTDVAARGLDIPEVDLVIQCNPPRDVDSYIHRSGRTGRAGRNGVCVCFYKRQEE 461 Query: 354 RRAERLFREANVSV--VWEPAPS 374 R +++ +A + V P PS Sbjct: 462 RDLQKVEYKAGIKFKRVSAPQPS 484 >gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1] gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum AMB-1] Length = 476 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 180/333 (54%), Gaps = 1/333 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL GY T +QE + L+ DVL AQTG+GKT +F L L L R P Sbjct: 16 KALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQRLDQFKKRAMPK 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S + L + PTRELAVQVG+ + + A+ GGV + + + + G ++V TP Sbjct: 76 SCRI-LVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMAGGVDVLVATP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I + + ++A+VLDEAD MLD+GF I I+ PK+R+ ++FSAT+ + Sbjct: 135 GRLLDLIEQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVALVPKQRQTVLFSATMPDS 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + VRV + + ID + + V + + +IL A+VF Sbjct: 195 IVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTLLTDILAGKDVGRALVFTR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R ++L + A+ G SQ R AL RDGR + +ATD+AARGID+ Sbjct: 255 TKHGANRVVELLEKAGIDADAIHGNKSQGARQKALADFRDGRIKALVATDIAARGIDVDG 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ EL + PE+ +HR GRT RAG G+++ Sbjct: 315 ITHVINFELPNEPESYVHRIGRTARAGASGIAL 347 >gi|330969509|gb|EGH69575.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 442 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P S Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 I-RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|315444871|ref|YP_004077750.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] gi|315263174|gb|ADT99915.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] Length = 468 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 188/362 (51%), Gaps = 4/362 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +AL+ERG +Q A L L +DVL +TGSGKT+AF + L + L Sbjct: 10 GVPAPLVKALAERGIAEPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSIPLVAALTGI 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AS P L +APTRELA Q+ LE + G+ V GGVS R+ L+ G Sbjct: 70 RRQ---ASRPSGLVLAPTRELATQITAALEPMATAAGLRVTTIYGGVSQGRQVSALRGGI 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL D ++ K +++ ++ VLDEAD M DLGF + IL ++P+ + L+F Sbjct: 127 DIVVACPGRLEDLMQQKVISLDNVTVTVLDEADHMADLGFLPGVTRILAATPRGGQRLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + + + V ++ + + + V +V+ L G Sbjct: 187 SATLDNGVDKLVQRFLDNPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKDLVHQL-ASGTG 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + K L E V L G LSQ R L G ARV +ATD+AA Sbjct: 246 RRILFMRTKHQARKLAKQLTESGVPSVDLHGNLSQPARERNLAAFSSGEARVLVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + D+ELV+H + + LHRSGRT RAG G V V+ +R ++L R+A + Sbjct: 306 RGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLLRKAGI 365 Query: 366 SV 367 +V Sbjct: 366 TV 367 >gi|225427683|ref|XP_002273691.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 797 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/352 (34%), Positives = 186/352 (52%), Gaps = 19/352 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFS 70 +A+ GY + +Q A + L+++DV+ A+TGSGKT AF L + + + L + Sbjct: 305 KAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEEN 364 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P A+ +APTRELA Q+ E G+ V +GG S+ + ++ G +V+ Sbjct: 365 EAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIA 424 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----------- 179 TPGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 425 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEEL 484 Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 R MFSAT+ PA+ LA+ Y ++ V V I + + I +++ S++ Sbjct: 485 DEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMMKESEKMF 544 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + +L G K AIVF +T+ S K L + ++V L G SQ++R +L+ R Sbjct: 545 KLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKSQEQREISLEGFRTK 604 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R V +ATDVA RGID+PD+ VI+ ++ N E HR GRTGRAG+ G++ Sbjct: 605 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 656 >gi|71656836|ref|XP_816959.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL Brener] gi|70882121|gb|EAN95108.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi] Length = 617 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/376 (33%), Positives = 201/376 (53%), Gaps = 10/376 (2%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M +F ++ P I ++ + GY T +Q L +D++ A+TGSGKT+AF + Sbjct: 69 MLLFSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPA 128 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117 A ++A+ P P+AL +APTRELAVQ+ E + + + C+ GG + Sbjct: 129 ALHIMAQPP-VRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQ 187 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R L+ G H+ + TPGRL D + + N+ + +VLDEAD MLD+GF I I Sbjct: 188 IRTLRAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIR 247 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIV 236 R+ LMFSAT I LA ++Q+D +RV++ SE+ ++D+ ++V D+ + Sbjct: 248 SDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRLE 307 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRA 295 IL+ G + ++F T+ + L L V+A+ G+ Q +R L R Sbjct: 308 EILQKLGRQRVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDR 367 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQN 351 V +ATDVAARG+D+ +L++VI+ ++ +N E+ +HR GRTGRAG++G + + P Sbjct: 368 SVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYSFVSGADPSK 427 Query: 352 MQRRAERLFREANVSV 367 R L R AN V Sbjct: 428 TIRDLVDLLRRANQEV 443 >gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans DMS010] gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans DMS010] Length = 442 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 184/340 (54%), Gaps = 6/340 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+SE+GY + +Q + P ++ DV+ +AQTG+GKT F L L L + Sbjct: 12 ILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLLHRLASGK---- 67 Query: 71 PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 PASA AL + PTRELA QV ++ + V GGV ++ + L+ GA I+ Sbjct: 68 PASANQVRALVLTPTRELAAQVADSVQTYGKFLPLRSTVVFGGVKINPQMMRLRRGADIL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + + HL+ ++LDEAD MLD+GF DI I+ PKKR+ LMFSAT Sbjct: 128 VATPGRLLDLYQQNAVRFDHLEVLILDEADRMLDMGFIHDIRKIISFLPKKRQNLMFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I +LAK + + ++++ N + + V + + ++ H + Sbjct: 188 FSTDIRSLAKTLVNNPIEISVSPANSTATTVKQWIAPVDKKKKPELLSQLINTHQWTQVL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ T+ L A+ G SQ R+ AL + G ++ +ATD+AARG+ Sbjct: 248 VFSRTKHGANKLTRHLESVGLSAAAIHGNKSQGARTKALADFKAGDKQILVATDIAARGL 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ L V++ +L + E+ +HR GRTGRAG G ++ ++ Sbjct: 308 DIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGATGEAISLV 347 >gi|91793927|ref|YP_563578.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91715929|gb|ABE55855.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 422 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 192/347 (55%), Gaps = 7/347 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 + +A+ E GY T VQ+A++ L +DVL SA+TG+GKT AF L + L + Sbjct: 12 LQDAVKECGYDATTPVQQAVIPVALLGQDVLASAETGTGKTAAFALPILMNLSQIDTQTL 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 +P AL + PTRELA+Q+ E +L Y++ + ++ + GG S++ +R+ L G + Sbjct: 72 TPEQRLRALVMTPTRELAIQI--EQNFLSYSRYLELNSLAVYGGASINPQRKALAQGVDV 129 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D I L++SH+ +V+DEAD MLDLGF DIE + ++R+ +MFSA Sbjct: 130 LVATPGRLFDIIGQHELDLSHVTHLVIDEADRMLDLGFVKDIEKVQRLVARQRQTMMFSA 189 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S + LA+ ++AS S + LV + + ++ + + Sbjct: 190 TFSDEVQVLAQKMLNQPAIFHLASSTTA-STVSQEVYLVDKRRKAELLSELIGRNNWQQV 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF ST+ + L + G+ SQ R+ AL+ + G+ R+ IATD+AARG Sbjct: 249 MVFTSTKETAEHLLSELTLDGLKAAVFHGDKSQGARNKALEEFKQGQLRILIATDLAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 +D+ L LVI+ EL PE+ +HR GRTGRAG G ++ FV P Q Sbjct: 309 LDIQALPLVINFELPPEPEDYVHRVGRTGRAGMAGHAISFVSPNEQQ 355 >gi|328769192|gb|EGF79236.1| hypothetical protein BATDEDRAFT_35392 [Batrachochytrium dendrobatidis JAM81] Length = 647 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/372 (34%), Positives = 196/372 (52%), Gaps = 23/372 (6%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74 GY N T VQ + +D++ AQTGSGKT AF L + S ++ S Sbjct: 195 GYSNATPVQRYSVAIVTAGRDLMACAQTGSGKTAAFLLPILSQNFSDGATVSDTPTDRRS 254 Query: 75 ---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P++L +APTRELA+Q+ E + ++ V V GG + + RDL+ G ++V T Sbjct: 255 KILPISLILAPTRELAIQIYEESKKFAYRSWVRPCVAYGGTPISDQLRDLERGCQLLVAT 314 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATI 189 PGRL D + ++++ ++ +VLDEAD MLD+GF I I+ + P R+ LMFSAT Sbjct: 315 PGRLVDLMERGRVSLASIRYLVLDEADRMLDMGFEPQIRQIVQQADMPTDRQTLMFSATF 374 Query: 190 SPAITTLAKNYQKDAV-----RVNIASENRQHS-----DIDYRAVLVALSDRDNAIVNIL 239 I LA+++ D V RV SEN + D+D R+VL+ + D I Sbjct: 375 PRNIQMLARDFLHDYVFIAVGRVGSTSENITQNIEMVEDVDKRSVLLDILATDAGIAQES 434 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 A +VF T+ L + F A+ G+ +Q+ER ALQ R GR V + Sbjct: 435 PDPAANLTLVFVETKRGADMLCNFLIDQRFPATAIHGDRTQREREFALQSFRSGRTPVLV 494 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIPQN--MQRR 355 AT VAARG+D+P++ V++ +L S+ ++ +HR GRTGRAG K + F + QN + + Sbjct: 495 ATAVAARGLDIPNVTHVVNFDLPSDIDDYVHRIGRTGRAGNIGKATAFFNMEQNRGIVKE 554 Query: 356 AERLFREANVSV 367 + +EAN + Sbjct: 555 LVEILQEANQEI 566 >gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454] Length = 555 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 182/336 (54%), Gaps = 3/336 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T +Q + L D+L AQTG+GKT F L + L + R + Sbjct: 21 AVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILERL--SHSRATSGK 78 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QV + + + V GGV ++ + L+ G IVV TP Sbjct: 79 IPVRALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDALRRGVDIVVATP 138 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH++ + +++S L+ +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT S Sbjct: 139 GRLLDHLQQRTIDLSSLQILVLDEADRMLDMGFIHDIKRVLKYLPSQRQNLLFSATFSDE 198 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA N + +A N + V + + ++++ H +VF Sbjct: 199 IKALADNLLDSPALIEVARRNTTAETVTQTIYPVDRDRKRELLTHLIKAHNWFQVLVFTR 258 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L + +A+ G SQ R+ AL +DG +V +ATD+AARGID+ Sbjct: 259 TKHGANRLAEQLTKDGISALAIHGNKSQAARTRALSEFKDGTLQVLVATDIAARGIDIDQ 318 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + PE+ +HR GRTGRAG G ++ ++ Sbjct: 319 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAISLV 354 >gi|319955548|ref|YP_004166815.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM 14237] gi|319424208|gb|ADV51317.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM 14237] Length = 446 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 109/317 (34%), Positives = 185/317 (58%), Gaps = 11/317 (3%) Query: 37 EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 +KD++ A+TG+GKT AFGL L + +N+ + +APTREL Q+ L Sbjct: 41 KKDIVALAKTGTGKTAAFGLPLLQLVNTKNNDIQ------VVILAPTRELGQQIYANLVS 94 Query: 97 L--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 Y+ V+ ++C GG + + L++ H+VV TPGRL D I+ K +NI + +VL Sbjct: 95 FAKYSPAIVIASIC-GGTPIKPQIEKLKSATHVVVATPGRLVDLIQQKAINIKNTSYLVL 153 Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASEN 213 DEADEM+ + D++ I+ P++RR L+F+AT+ AI L +NY K+ + + + Sbjct: 154 DEADEMVT-ALKQDLDPIVKELPEERRTLLFTATMPGAIKQLVQNYLNKNVMHLEADMDT 212 Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273 H I+++ ++V ++ + +++ L + I+FC T+A+V++ K LA + F A Sbjct: 213 IGHQGIEHQYIVVEPIEKLDVLLHFLSSREGEQGIIFCKTKAAVNKLAKNLAINKFSSGA 272 Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333 L G L+Q R + R+G+ ++ +ATD+A+RGID+ D+ V++ L + +HRSG Sbjct: 273 LHGSLTQVIRDRVMGQFREGQLKILVATDLASRGIDVKDISYVVNYHLPETYDLYVHRSG 332 Query: 334 RTGRAGRKGMSVFVIPQ 350 RT RAG G+S+ ++ Q Sbjct: 333 RTARAGANGLSITILQQ 349 >gi|197337346|ref|YP_002157966.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] gi|197314598|gb|ACH64047.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] Length = 418 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 178/336 (52%), Gaps = 1/336 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72 ++E G+ T VQ+ + L+ DVL AQTG+GKT AFGL L L+ +R + Sbjct: 15 TVAELGFKEATPVQKQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLIQRLIESPIERHEES 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 +L + PTRELA QV L T + V V GG S++ ++ +L GA I++ TP Sbjct: 75 KVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQKENLLGGADILIATP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K + ++ + +VLDEAD MLD+GF DI+ IL P +R+ L FSAT S Sbjct: 135 GRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPDERQTLFFSATFSKK 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + +A V + N ++ V + + ++ + +VF Sbjct: 195 VREIAYYMLNKPKEVQVTPTNSTADTVEQMVYPVDKHRKSELLAYLIGSRNWQQVLVFTK 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ K L + + +++G+ SQ R AL+ + G+ R IATDVAARG+D+ Sbjct: 255 TKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKVRALIATDVAARGLDIEQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 LE VI+ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 315 LECVINYELPFKAEDYVHRIGRTGRAGHTGKAISLM 350 >gi|90412948|ref|ZP_01220947.1| putative ATP-dependent RNA helicase, DEAD box family protein [Photobacterium profundum 3TCK] gi|90326127|gb|EAS42561.1| putative ATP-dependent RNA helicase, DEAD box family protein [Photobacterium profundum 3TCK] Length = 422 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/377 (33%), Positives = 195/377 (51%), Gaps = 12/377 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDR 68 + ++E G+ T +QE + L D++ AQTG+GKT AFGL + LLA E+D Sbjct: 14 DTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMIQRLLASQQSEHDE 73 Query: 69 --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A AL + PTRELA QV + T + VAV GG S+ + + L++G Sbjct: 74 GYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTSMGVQVKALKSGVD 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL DH +++S ++ +VLDEAD MLD+GF DI+ I+ P+KR+ L+FS Sbjct: 134 ILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIMQRMPRKRQTLLFS 193 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S + LA + D + + EN + V + + ++ Sbjct: 194 ATFSNQVKKLAYDILADPKLIEVTPENIAAESVTQMVYPVDKHRKRELLSYLIGSRNWNQ 253 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++F T+ K L + V+++G+ SQ R AL ++G+ R +ATDVAAR Sbjct: 254 VLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDFKEGKVRAMVATDVAAR 313 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQRRAERLFREAN 364 G+D+ L V++ +L E+ +HR GRTGRAG G +S+ I + RA + Sbjct: 314 GLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSIDEEWALRAIEELLDTR 373 Query: 365 VSVVW----EPAPSVEA 377 + W EP P+++A Sbjct: 374 LPQEWLEGYEPDPTIKA 390 >gi|66047524|ref|YP_237365.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63258231|gb|AAY39327.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 442 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P S Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 I-RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|327332290|gb|EGE74026.1| ATP-dependent RNA helicase [Propionibacterium acnes HL097PA1] Length = 491 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 26 GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 86 PREDNR------PRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFK 139 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ A+ L + Y + V + + + + + A + ++ + I Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATD Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+ Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377 Query: 363 ANVSVV 368 A V V Sbjct: 378 AGVKPV 383 >gi|83593250|ref|YP_427002.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] gi|83576164|gb|ABC22715.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] Length = 393 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 189/345 (54%), Gaps = 4/345 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + A++ GY T +Q + P L +DVL AQTG+GKT +F L L L + Sbjct: 13 LARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQRLTKDPQPRV 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P P AL + PTRELA Q+ + L + + V +GGV + R+ R +Q G I+V Sbjct: 73 PGR-PRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILRQTRMVQRGLEILV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + K +++ ++ +VLDEAD MLD+GF ++ I P+KR+ +MFSAT+ Sbjct: 132 ATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVLPRKRQTVMFSATL 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248 +T L + D VRV +A + ID R + V +++ ++++L + AI Sbjct: 192 PNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLLDLLGDARKVERAI 251 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ L E+ + + G SQ R AL + G+ R +ATD+AARGI Sbjct: 252 VFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVRALVATDIAARGI 311 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 D+ + VI+ +L + PE+ +HR GRT RAG G+++ PQ M Sbjct: 312 DVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEM 356 >gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar] Length = 611 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 131/395 (33%), Positives = 214/395 (54%), Gaps = 22/395 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q N KDV+ A+TG+GKT+AF + L L + D A Sbjct: 48 LQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEKLQNDPDDKRRGRA 107 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA+QV ++ + + K + V GG S + + +++G I+VGTPGR Sbjct: 108 PKILCLAPTRELAIQVSKDFKDMTKK--LSVTCFYGGSSYNPQLDAIRSGIDILVGTPGR 165 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----RMLMFSATI 189 + DH++ L++S LK VVLDE D+MLD+GF + +E IL +S +K + L+FSAT Sbjct: 166 IKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSETNPQTLLFSATC 225 Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y + V++ + Q + +++ A+ S R I ++++ Y G+ Sbjct: 226 PSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYSGSH 285 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVFC T+ + + + A +L G++ Q++R L+ R G V +AT+VA Sbjct: 286 GRTIVFCETKKDANELS-MNASIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATNVA 344 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARG+D+P+++LV+ + E+ +HRSGRTGRAGR G+ + + + + + ++A Sbjct: 345 ARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQKAG 404 Query: 365 VSVVWEPAPSVEAI---RERDAQRILQDPLFLDSI 396 ++ P+ I +DA R FLDS+ Sbjct: 405 ITFKRVGVPTANDIIKSSSKDAVR------FLDSV 433 >gi|229587022|ref|YP_002845523.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5] gi|228022072|gb|ACP53780.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5] Length = 410 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 193/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 1 MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 60 SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 111 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P KR Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPDKR 171 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I +++ Y + VR+ + + N+ ++I ++ V+ ++ +A+ L Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLG 231 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + I+F T+ S + K+L A+ G+LSQ++R + R R+ +A Sbjct: 232 NREG-SVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 345 >gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 364 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/350 (34%), Positives = 190/350 (54%), Gaps = 8/350 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 M +F + + +AL + GY T +Q + L D+L A TG+GKT AF + + Sbjct: 1 MSLFSKLSLELQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPIVE 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L + P AL + PTRELA+QV ++ L + V GG SV + Sbjct: 61 KL----QKGKPDVK--ALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDI 114 Query: 121 LQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 LQN I++GTPGR+ D I K LN+S ++ +VLDE D+MLD+GF +DIE+I+ PK+ Sbjct: 115 LQNKNVDILIGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKE 174 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNI 238 R MFSAT+ I LAK + K + +I+ + + L + ++ + +++I Sbjct: 175 RTTYMFSATVPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMIKLSSPGEKIHELMHI 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + H + ++F T+ +L + + AL G+L+Q++R AL + G + Sbjct: 235 IDTHPMEKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSIL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 IATDVAARG+D+ D+ +VI+ + +PE +HR GRTGR G+ G + +I Sbjct: 295 IATDVAARGLDIKDVGVVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLI 344 >gi|205352078|ref|YP_002225879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271859|emb|CAR36694.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627120|gb|EGE33463.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 453 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 191/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V N+ R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHNLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|145224540|ref|YP_001135218.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145217026|gb|ABP46430.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum PYR-GCK] Length = 468 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 188/362 (51%), Gaps = 4/362 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +AL+ERG +Q A L L +DVL +TGSGKT+AF + L + L Sbjct: 10 GVPAPLVKALAERGIAEPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSIPLVAALTGI 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AS P L +APTRELA Q+ LE + G+ V GGVS R+ L+ G Sbjct: 70 RRQ---ASRPSGLVLAPTRELATQITAALEPMATAAGLRVTTIYGGVSQGRQVSALRGGI 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL D ++ K +++ ++ VLDEAD M DLGF + IL ++P+ + L+F Sbjct: 127 DIVVACPGRLEDLMQQKVISLDNVTVTVLDEADHMADLGFLPGVTRILAATPRGGQRLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + + + V ++ + + + V +V+ L G Sbjct: 187 SATLDNGVDKLVQRFLDNPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKDLVHQL-ASGTG 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + K L E V L G LSQ R L G ARV +ATD+AA Sbjct: 246 RRILFMRTKHQARKLAKQLTESGVPSVDLHGNLSQPARERNLAAFSSGEARVLVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + D+ELV+H + + LHRSGRT RAG G V V+ +R ++L R+A + Sbjct: 306 RGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLLRKAGI 365 Query: 366 SV 367 +V Sbjct: 366 TV 367 >gi|330938172|gb|EGH41869.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. pisi str. 1704B] Length = 442 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P S Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 I-RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis O35E] Length = 581 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 206/369 (55%), Gaps = 12/369 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL++ GY T +Q + L +D+L+SAQTGSGKT AF L + + + + + Sbjct: 29 ILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---SRKPT 85 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA+QV + + +V +GG + R L+ G +++ Sbjct: 86 IEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGVQVII 145 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+R +++S L ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M SAT Sbjct: 146 ATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATW 205 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI 248 A+ +A+++ + +V+I E+ + ID + ++N ++ +L K A+ Sbjct: 206 DGAVGKIAESFTVNPEKVSIKVES---AHIDESVYYCDDFNHKNNILLQVLNNPKIKQAV 262 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +T+ S + L E F+ L G+L Q +R+ + M+ G+ V +ATDVAARGI Sbjct: 263 IFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGI 322 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFREAN 364 D+ + VI+ +L E+ +HR GR GRAGR G++V + N R+ E L R+ + Sbjct: 323 DISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSINDNRQLEHINRYLKRQMS 382 Query: 365 VSVVWEPAP 373 VS + P Sbjct: 383 VSTIEGLEP 391 >gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense] Length = 440 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 114/356 (32%), Positives = 198/356 (55%), Gaps = 13/356 (3%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 MK F+++ P+ + EA G+ +Q + L+ KDV+ AQTGSGKT AF L + Sbjct: 8 MKSFKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPI 67 Query: 59 ASTLLAENDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 LL A P A ++PTRELA+Q+ + E L + GV AV +GG+ + Sbjct: 68 LHALLQ-------APRPNHFFACVLSPTRELAIQISEQFEALGSGIGVKSAVLVGGIDMV 120 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 ++ + HI+VGTPGR+ DH++ KG ++S LK +VLDEAD +L+ F + + IL Sbjct: 121 QQSIKIAKHPHIIVGTPGRVLDHLKNTKGFSLSKLKYLVLDEADRLLNEDFEESLNEILG 180 Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P++RR +FSAT++ + L + ++ V++ +++ + + + +D Sbjct: 181 MIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQYRFLPAKRKDCY 240 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 +V IL ++VF T + +L + + ++G +SQ +R AL + G Sbjct: 241 LVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGD 300 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + + TDVA+RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+++ ++ Q Sbjct: 301 CNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQ 356 >gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase domain-containing protein [Geobacter uraniireducens Rf4] gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens Rf4] Length = 438 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 186/354 (52%), Gaps = 6/354 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ +GY T +Q + D+L AQTG+GKT AF L + L EN Sbjct: 15 AIAAQGYTTPTPIQTEAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQRL-GENIPPDKRR 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV ++ + + + GGV++ + L G IVV TPG Sbjct: 74 RPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIERLHRGVDIVVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH +N+S +K +VLDEAD MLDLGF DDI + + P KR+ ++FSAT S +I Sbjct: 134 RLLDHAERGTINLSRIKFLVLDEADRMLDLGFIDDIHKVAEYLPAKRQTMLFSATYSQSI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCS 252 LA R+ +A N +D +AV R +++ L G N + VF Sbjct: 194 KQLADELLDQPRRIEVARRN-IAADAVTQAVYQVEKSRKREMLSFLISKGNWNQVLVFAR 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + T+ L + A+ SQ R+ L + G RV +ATDVAARG+D+ Sbjct: 253 TRYGADKLTEELLYDGIKAAAIHSNKSQSIRTRTLAEFKRGEFRVLVATDVAARGLDIER 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREA 363 L V++ +L PE+ +HR GRTGRAG G+++ ++ Q++ + E+L + A Sbjct: 313 LPHVVNYDLPQVPEDYVHRIGRTGRAGENGVALSLVSHEEQSLLQAIEKLLKYA 366 >gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio parahaemolyticus 16] gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio parahaemolyticus 16] Length = 419 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 177/337 (52%), Gaps = 1/337 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I LS G+ T VQ + L KDVL AQTG+GKT AFGL + L+ + Sbjct: 13 TILSTLSSLGFEQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPIIQKLIESEAKR 72 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P S + AL + PTRELA QV L T + + GG S++ + R+L+ G I+ Sbjct: 73 DPQSNDVRALVLVPTRELAQQVFDNLVQYAQATELKIVAAYGGTSMNVQTRNLEQGCDIL 132 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH+ K +++ + +VLDEAD MLD+GF DI+ IL R+ L FSAT Sbjct: 133 IATPGRLIDHMFCKNVSLLKSEFLVLDEADRMLDMGFMPDIQRILKRFNAVRQTLFFSAT 192 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 I +A Q + V V +++ N + V + + ++ + + Sbjct: 193 FDKRIKNIAYKLQSEPVEVQVSASNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVL 252 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ K L + +++G+ SQ R AL + G+ R IATDVAARG+ Sbjct: 253 VFTKTKQGSDALVKELKLDGIKAASINGDKSQGARQKALDDFKAGKIRALIATDVAARGL 312 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ +LE V++ ++ E+ +HR GRTGRAG++G +V Sbjct: 313 DIQELEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAV 349 >gi|114777228|ref|ZP_01452239.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Mariprofundus ferrooxydans PV-1] gi|114552373|gb|EAU54856.1| Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal [Mariprofundus ferrooxydans PV-1] Length = 426 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 189/364 (51%), Gaps = 7/364 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++++GY T VQ + L DVL AQTG+GKT F L + + + S Sbjct: 15 AVADQGYETPTPVQANSIPVILAGHDVLAGAQTGTGKTAGFTLPMLQLMHKTHPERSRNH 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG + + V GGV ++ + + LQ G I+V TPG Sbjct: 75 PIRALVLTPTRELAAQVGESIATYGKYLPLRSTVVFGGVGINPQIQKLQRGVDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D I N+ H++ VLDEAD MLD+GF DI +L PKKR+ L+FSAT S I Sbjct: 135 RLLDLIGQGKANLGHVEFFVLDEADRMLDMGFIHDIRKVLKMLPKKRQNLLFSATFSEEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V V +A H + V+ + + + + +++R + +VF T Sbjct: 195 KKLANGFLHAPVYVEVARNETAH-QVTQVVHPVSKAKKRDLLSHLIRQGDWQQVLVFTKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + ++ T L VA+ G SQ R+ AL + G RV +ATD+AARG+D+ L Sbjct: 254 KHGANKLTTQLESDGITAVAIHGNKSQTARTKALAGFKAGSVRVMVATDIAARGLDIDSL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFREANVSVV-- 368 V++ EL E+ +HR GRTGRAG G S+ ++ + ++ ERL ++ VV Sbjct: 314 PHVVNYELPHVAEDYVHRIGRTGRAGNSGESLSLVSGDEKKLLVGIERLIKKPIAKVVVP 373 Query: 369 -WEP 371 +EP Sbjct: 374 GFEP 377 >gi|293602448|ref|ZP_06684894.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553] gi|292819210|gb|EFF78245.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553] Length = 597 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 206/377 (54%), Gaps = 18/377 (4%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FEN+ P ++ A+ E G+ T+VQ A + L D++VS+QTGSGKT AF L Sbjct: 3 FENLGLAPALL-SAVQEAGFNTPTAVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPALH 61 Query: 61 TLLAENDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115 + PA+ + L + PTRELA+QV E Y + + A +GG+ Sbjct: 62 RIAQ-----MPANKGVGVQVLVLTPTRELALQV-TEATATYGRKLADLRTATVVGGMPYG 115 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + + L ++V TPGRL DH++ + ++ + +VLDEAD MLD+GF +DIE I+ Sbjct: 116 AQLKALSRRVDVLVATPGRLIDHLQSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVSR 175 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233 P+ R+ L+FSAT+ I LA +D R+ +A +H++I +++L A S + Sbjct: 176 LPEDRQTLLFSATLDGTIAKLAAKMMRDPQRIEMAGAKEKHTNI-TQSLLYADDASHKMQ 234 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + ++LR AIVF ST+ LA+ F AL G+++Q++R+ L ++ G Sbjct: 235 LLDHVLRDAKLDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQLQRG 294 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + R+ +ATDVAARGID+ + ++ +L E+ +HR GRTGRAGR G++ + + + Sbjct: 295 QLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLATHSER 354 Query: 354 RRAERLFREANVSVVWE 370 + R+ S+ E Sbjct: 355 HKVRRIEHYIGQSITPE 371 >gi|238650986|ref|YP_002916842.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic] gi|238625084|gb|ACR47790.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic] Length = 410 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 112/332 (33%), Positives = 185/332 (55%), Gaps = 10/332 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q+ + + D+L S+QTGSGKT+A+ L L + + + AL + PT Sbjct: 23 TEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFIK--------NKTTALILVPT 74 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA Q+ L + + AV IGG + ++ L+ +++GTPGR+ DH+ Sbjct: 75 RELATQIHSTLNKVTTSYKINSAVLIGGAPMPKQFMQLKKNPKVIIGTPGRIIDHLNRGS 134 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L I + VLDE D MLD+G ++ +E I P+KR++LMFSAT+ I +++ Y + Sbjct: 135 LKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNN 194 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 VR+ + + N+ ++I ++ V+ ++ +A+ L + I+F T+ S + K+ Sbjct: 195 PVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLGNREG-SVIIFVKTKRSADQLAKM 253 Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323 L A+ G+LSQ++R + R R+ +ATDVAARG+D+P + VI+ +L Sbjct: 254 LKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPM 313 Query: 324 NPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 314 CPEDYLHRIGRTGRAGATGHALSFISPDDVIR 345 >gi|114048006|ref|YP_738556.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113889448|gb|ABI43499.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 449 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 193/351 (54%), Gaps = 15/351 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAS 60 ++ Q + ++L G T++QE L L KD++ S++TGSGKT+AF L +++ Sbjct: 7 SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L++ D P L + PTRELA QV +L L A T +GG + + + + Sbjct: 67 RALSKRD-------PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L H +V TPGR+ DH+ K L ++ L+ +VLDEAD MLDLGF ++ I ++ KR Sbjct: 120 LAKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKR 179 Query: 181 RM-LMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-N 237 R LMFSAT+ + I +A K+ V I + + +H DI R L D A++ + Sbjct: 180 RQTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTH 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L K I+F +TRA R L+ F ALSGEL Q R+ + G+ ++ Sbjct: 240 LLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + TDVA+RG+DL ++ LVI+ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|302765659|ref|XP_002966250.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii] gi|302801131|ref|XP_002982322.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii] gi|300149914|gb|EFJ16567.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii] gi|300165670|gb|EFJ32277.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii] Length = 411 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 187/359 (52%), Gaps = 13/359 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F + L N AL Sbjct: 57 GFEKPSTIQQRGIVPFCKGIDVIQQAQSGTGKTATFCSGILQQLDYNNVECQ------AL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V V C+GG V +++R LQ G H+VVGTPGR+ D Sbjct: 111 VLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTDVRQDQRILQAGVHVVVGTPGRVYDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 171 LRRRALRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGLFSATMPPEALEITR 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + + ++ +++FC+TR V Sbjct: 231 KFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNTRRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 291 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN--VSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ M R ER+ + + V E P+ Sbjct: 351 NYDLPTQPENYLHRIGRSGRFGRKGVAI----NFMVREDERMLHDIQKFYNTVIEELPN 405 >gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri] Length = 801 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/329 (36%), Positives = 182/329 (55%), Gaps = 7/329 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAI 80 T VQ+ + + +D++ AQTGSGKT AF L + + ++ FS P AL + Sbjct: 376 TPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLTGMMKNGLTGSAFSDVQEPQALVV 435 Query: 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 APTRELA+Q+ + T + V GG SV + + ++NGAHIVVGTPGRL D I Sbjct: 436 APTRELALQIFNDARKFSHGTMLRPVVLYGGTSVGYQLKQVENGAHIVVGTPGRLIDVIN 495 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRMLMFSATISPAITTL 196 ++++ LK ++LDEAD MLD+GF DI+ I+ +P+K R+ LMFSAT I L Sbjct: 496 KGKISLAKLKYLILDEADRMLDMGFGPDIKKIVHELGTPEKTERQTLMFSATFPEEIQKL 555 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 A ++ D + + + SD+ V + + +IL GA +VF + + Sbjct: 556 AGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQKRQKLCDILSESGADKTLVFVEQKRN 615 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 L+E F ++ G+ Q+ER AL+ + G+A + IAT VAARG+D+P+++ V Sbjct: 616 ADFLASYLSESGFPTTSIHGDRLQREREEALRDFKQGKAPILIATSVAARGLDIPNVKHV 675 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345 I+ +L + + +HR GRTGR G G + Sbjct: 676 INYDLPQSIDEYVHRIGRTGRCGNLGKAT 704 >gi|325919452|ref|ZP_08181477.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865] gi|325550072|gb|EGD20901.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865] Length = 438 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 187/345 (54%), Gaps = 10/345 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ G+ T +Q+ + P L+ +D++ AQTGSGKT+A+ L L + +P + Sbjct: 28 ALARAGHHTPTPIQQQAIQPMLQGRDLIAMAQTGSGKTLAYALPLL-----QQRCLAPET 82 Query: 74 APL---ALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128 AP AL + PTRELA QV L L A + + GG S++ + L+ GA IV Sbjct: 83 APRVLGALVLVPTRELAAQVEDTLHQLAAHLPRRLKIVTATGGSSINPQLLALRGGADIV 142 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + L +S + +VLDEAD +L+LGF +++ IL P +R+ ++FSAT Sbjct: 143 VATPGRLLDLVDHNALRLSEVATLVLDEADRLLELGFGAELDRILALLPAQRQSVLFSAT 202 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 P I +LAK +D +R+ I + I+ RA+ V R + ++L+ HG + + Sbjct: 203 FPPGIASLAKRRLRDPLRITIVATPDAAPAIEQRAIAVDAGQRTQLLRHLLQEHGWSHVL 262 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF ++R + + + L + L GELSQ R L + +V +ATD+A RGI Sbjct: 263 VFVASRHTAEKVAEKLTKTGINAQPLHGELSQGRRERTLYAFKQREVQVLVATDLAGRGI 322 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 D+ L VI+ +L + + HR GRT RAG G+++ + Q Sbjct: 323 DIDALPAVINYDLPRSTVDYTHRIGRTARAGASGVAISFVSAESQ 367 >gi|119188415|ref|XP_001244814.1| hypothetical protein CIMG_04255 [Coccidioides immitis RS] gi|118575174|sp|Q1DZK8|DBP3_COCIM RecName: Full=ATP-dependent RNA helicase DBP3 Length = 464 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 117/317 (36%), Positives = 188/317 (59%), Gaps = 11/317 (3%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 +D++ A+TGSGKT+AFGL +L N+ + + P AL I PTRELAVQ+ +L Sbjct: 137 RDLIGVAETGSGKTLAFGLPCLRRVLELNNSET-SCKPCALIITPTRELAVQIYDQLLRF 195 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + V +A GG +RR+++N A +V+ TPGRL D + +N+S +K +VLDEA Sbjct: 196 SSAVDVGIACIYGGSPKDHQRREIRN-ASVVIATPGRLKDFQADQTINLSGVKYLVLDEA 254 Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI--ASEN 213 D MLD GF DI+ I+ P +KR+ +MF+AT + LA ++ K+ V V I +S+ Sbjct: 255 DRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDI 314 Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAEHL 268 R + I ++ ++D+ ++ +LR + G KN +VFC + R + + Sbjct: 315 RANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVFCLYKKEAMRVERFIGSKG 374 Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328 F+V + G++SQ ER +L+ + G + +ATDVAARG+D+P ++LV++ E+ Sbjct: 375 FKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDY 434 Query: 329 LHRSGRTGRAGRKGMSV 345 +HR GRTGRAG +G+++ Sbjct: 435 VHRIGRTGRAGAEGLAI 451 >gi|153824344|ref|ZP_01977011.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae MZO-2] gi|254226198|ref|ZP_04919793.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V51] gi|125621300|gb|EAZ49639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V51] gi|149741898|gb|EDM55927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae MZO-2] Length = 422 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 189/369 (51%), Gaps = 7/369 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72 LSE G VN T +Q+ + L+ KDVL AQTG+GKT AFGL L + + R + + Sbjct: 20 TLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNS 79 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV L+ T + + GG S+ + L+ G I++ TP Sbjct: 80 KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A +D + V + N + V + + ++ + +VF Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368 LE V++ ++ E+ +HR GRTGRAG G++V ++ + Q + E + R N + Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWL 379 Query: 369 --WEPAPSV 375 +EP+P V Sbjct: 380 KGFEPSPVV 388 >gi|293605139|ref|ZP_06687530.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC 43553] gi|292816463|gb|EFF75553.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC 43553] Length = 462 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 134/402 (33%), Positives = 208/402 (51%), Gaps = 16/402 (3%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F +P + + + L G+ +T +Q L L +D++ A+TGSGKT AFGL + Sbjct: 6 FSTLPLLPALLDNLQSLGFEQMTPIQAQSLPLILEGRDIIAQAKTGSGKTAAFGLGVLQK 65 Query: 62 LLAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119 L PA AP AL + PTRELA QV +EL L V + GG + Sbjct: 66 L-------DPARLAPQALLVCPTRELADQVAQELRRLARLIPNVKILTLCGGAPARPQAE 118 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L GAH+VVGTPGR+ DH+ L++S L +VLDEAD M+D+GF DDI I P K Sbjct: 119 SLARGAHLVVGTPGRIQDHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAK 178 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT I L+ + ++ V + +++ S I+ + DR +A+ +L Sbjct: 179 RQTLLFSATYPDNIRKLSARFLRNPAEVKVEAQH-DASRIEQIFYEIDEKDRLDAVARLL 237 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + + FC+T+ + L AL+G+L Q+ER L + V + Sbjct: 238 AHFRPVSTLAFCNTKIRSHDLVERLQADGISAQALNGDLEQRERDEILIQFANQSCAVLV 297 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATDVAARG+D+ +L VI+ +++ + E +HR GR+GR +KG+++ + + R A + Sbjct: 298 ATDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLV 357 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401 + + W S++ A R L+ P+ IQG +K Sbjct: 358 EQYQGTPLKWGDIKSLKP----KADRPLRAPMVTLCIQGGKK 395 >gi|187779372|ref|ZP_02995845.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC 15579] gi|187772997|gb|EDU36799.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC 15579] Length = 374 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 187/345 (54%), Gaps = 13/345 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L + + T +QE + DV+ AQTG+GKT+AF LL + S Sbjct: 13 IIDVLKNQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAF-------LLPMFENIS 65 Query: 71 P-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P +A L I PTRELA+Q+ E L + + GG + + + L+N H+V+ Sbjct: 66 PDINAIQGLIITPTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKLKNNIHLVI 125 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ LN LK +VLDEADEML +GF++++ I+D++P+KR+ L FSAT+ Sbjct: 126 ATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIDNTPRKRQTLCFSATM 185 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNA 247 + + LA +D V I E +I + VL+ +DR + IL A Sbjct: 186 NSEVKKLAYKNMRDPKLVIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMA 243 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V + L + + L G ++Q +R ++ ++ + IATDVAARG Sbjct: 244 IIFCRTKRRVDNLEEDLYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARG 303 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351 +D+ + V + ++ N E+ +HR GRTGRAG KG + +FV P++ Sbjct: 304 LDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKD 348 >gi|167586824|ref|ZP_02379212.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu] Length = 396 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 197/363 (54%), Gaps = 39/363 (10%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------- 58 P+++ AL GYV T VQ+ + + +D+LVS+ TGSGKT AF L Sbjct: 43 PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 101 Query: 59 -------ASTLLAENDRFS----PASAPLALAIAPTRELAVQV-------GRELEWLYAK 100 A + DR + P + P L + PTRELA+QV G+ L L Sbjct: 102 AQAQQPRAPREPSNGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 161 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 + +GGV+ ++ L I+V TPGRL DH+ +++S LK +VLDEAD M Sbjct: 162 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 215 Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 LD+GF +DIE I+D++P+ R+ ++FSAT+ I +L KD R+ I + R S + Sbjct: 216 LDMGFIEDIETIVDATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 273 Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + + DRD+ + ++LR + AI+F +T+ + LA+ F+ AL G+ Sbjct: 274 IAQTVHYVDDRDHKDRLLDHLLRDNALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 333 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q R+ ++ +R+ R RV +ATDVAARGID+P + V + +L E+ +HR GRTGR Sbjct: 334 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 393 Query: 338 AGR 340 AGR Sbjct: 394 AGR 396 >gi|256422981|ref|YP_003123634.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] gi|256037889|gb|ACU61433.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM 2588] Length = 444 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 193/371 (52%), Gaps = 14/371 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + + GY T VQE ++ P + KD+L AQTG+GKT AF L + L+ E A Sbjct: 14 DGIDAMGYTTATPVQEKVIPPIIAGKDILACAQTGTGKTAAFLLPILHRLITEPHD---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQNGAHIVV 129 +L I PTRELAVQ+ + LE + T V GG + E++ L +G IV+ Sbjct: 71 RKINSLIIVPTRELAVQIAQTLEGMSYFTSVSSIAVYGGSNGALFAAEKKALTSGVDIVI 130 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGR+ H+ + + +K +VLDEAD MLD+GF DDI I + PK+R+ L+FSAT+ Sbjct: 131 CTPGRMIAHLNMGYVKLDAVKYLVLDEADRMLDMGFSDDIIRITSTLPKERQNLLFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LA +NIA ++ I A +V + I +L I+ Sbjct: 191 PDKIRKLALKILHQPEEINIAI-SKPPEKIVQEAFVVFEEQKTGLIKQLLARKEFGCIII 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FCS + +V + T L + F V + +L Q +R L ++ + ++ +ATD+ +RGID Sbjct: 250 FCSRKQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLKMLVATDILSRGID 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-------FRE 362 + D++LVI+ ++ ++ E+ +HR GRT RA G + +I + QR+ R+ + Sbjct: 310 IEDIDLVINYDVPNDAEDYIHRIGRTARAATDGTAYTIISEKEQRKFARIEEVLGKPVTK 369 Query: 363 ANVSVVWEPAP 373 A V P P Sbjct: 370 AEVPAALGPVP 380 >gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548] gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548] Length = 441 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 184/339 (54%), Gaps = 2/339 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL + Sbjct: 11 LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G I++ Sbjct: 69 AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L VLDEAD MLD+GF +D++ I PKK + LMFSAT Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + V+ N I + + S++ NA++++++ +V Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AARGID Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L VI+ +L + E+ +HR GRTGRAG++G+++ ++ Sbjct: 309 IAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLV 347 >gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278] gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene) [Bradyrhizobium sp. ORS278] Length = 473 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 181/343 (52%), Gaps = 1/343 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + AL E Y T +Q + L+ +DV+ AQTG+GKT +F L + LL Sbjct: 8 NLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILHRLLEN 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P +A L ++PTREL+ Q+ + + IGGV + R+ R + G Sbjct: 68 RIKPQPKTA-RVLVLSPTRELSGQILDSFNTYGRHIRLSSTLAIGGVPMGRQVRAVMPGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL D ++G L +SH++ +VLDEAD MLD+GF +DI I+ P KR+ L F Sbjct: 127 DVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA + +D RV + + I R + V S + + + +L+ Sbjct: 187 SATMPKDIAELADSMLRDPARVAVTPVSSTVERIAQRVIQVDHSAKPSLLAQLLKNEPVN 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A+VF T+ + K L + A+ G SQ R L R G R +ATD+AA Sbjct: 247 RALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ + V++ +L + PE +HR GRT RAG G+++ ++ Sbjct: 307 RGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLV 349 >gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group] gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group] gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group] Length = 1398 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 193/344 (56%), Gaps = 12/344 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P I + + G++N T +Q L+ +D++ A+TGSGKT+ G + + + Sbjct: 611 FPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL--GYLIPAFIHLRR 668 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 + +P P L +APTRELA Q+ E + ++ V C+ GG S + R+L+ GA Sbjct: 669 YQNNPMLGPTVLVLAPTRELASQIQDEA-VKFGRSSRVSCTCLYGGTSKGLQLRELERGA 727 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL D + + +++ + +VLDEAD MLD+GF I I+D P+ R+ LM+ Sbjct: 728 DIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMY 787 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYH 242 +AT +T +A + KD V+VNI S + S Y V+ L D+ + ILR Sbjct: 788 TATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPL-DKQRRLEQILRAQ 846 Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G+K I+FCST+ + + + F ++ G+ SQ ER N L R GRA + +A Sbjct: 847 ERGSK-VIIFCSTKKMCDQLARDIGRS-FGAASIHGDKSQAERDNVLNQFRTGRAPILVA 904 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 TDVAARG+D+ D+ +VI+ + + E+ +HR GRTGRAG G+S Sbjct: 905 TDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVS 948 >gi|229526712|ref|ZP_04416116.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426] gi|229336870|gb|EEO01888.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426] Length = 422 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 189/367 (51%), Gaps = 7/367 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72 ALSE G VN T +Q+ + L+ KDVL AQTG+GKT AFGL L + + R + + Sbjct: 20 ALSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANS 79 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV L+ T + + GG S+ + L+ G I++ TP Sbjct: 80 KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A +D + V + N + V + + ++ + +VF Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368 LE V++ ++ E+ +HR GRTGRAG G++V ++ + Q + E + R N + Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSYDEQPQLEAIERLLNTRLPQEWL 379 Query: 369 --WEPAP 373 +EP+P Sbjct: 380 KGFEPSP 386 >gi|241949729|ref|XP_002417587.1| ATP-dependent, RNA helicase, putative [Candida dubliniensis CD36] gi|223640925|emb|CAX45242.1| ATP-dependent, RNA helicase, putative [Candida dubliniensis CD36] Length = 538 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 114/318 (35%), Positives = 186/318 (58%), Gaps = 13/318 (4%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L KDV+ A+TGSGKT AFG+ + ++ + + + L I+PTRELA+Q+ L Sbjct: 162 LSNKDVIGVAETGSGKTFAFGVPAINNIITTGNTNTLS----VLCISPTRELALQIYDNL 217 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 L A +GV GGVS + R L+ A++VV TPGRL D I +N+ ++ +VL Sbjct: 218 IELTADSGVNCVAVYGGVSKDDQIRKLKT-ANVVVATPGRLVDLINDGAINLGNVNYLVL 276 Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213 DEAD ML+ GF +DI+ I+ +++ KR+ LMF+AT + LA N+ V+V + + Sbjct: 277 DEADRMLEKGFEEDIKTIISNTNNAKRQTLMFTATWPKEVRELANNFMNSPVKVTVGDRD 336 Query: 214 RQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA-----IVFCSTRASVSRFTKVLAE 266 ++ ++ ++ D++ ++ +LR + A + ++F + SR L Sbjct: 337 ELSANKRITQIVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKR 396 Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326 + F V A+ G+LSQQ+R+ AL + G++ + +ATDVAARG+D+P++++VI+ E Sbjct: 397 NRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIE 456 Query: 327 NLLHRSGRTGRAGRKGMS 344 + +HR GRTGRAG KG + Sbjct: 457 DYVHRIGRTGRAGAKGTA 474 >gi|153830439|ref|ZP_01983106.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae 623-39] gi|229514213|ref|ZP_04403674.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21] gi|254285788|ref|ZP_04960751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae AM-19226] gi|148874080|gb|EDL72215.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae 623-39] gi|150424285|gb|EDN16223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae AM-19226] gi|229348193|gb|EEO13151.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21] gi|327485774|gb|AEA80180.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3894-4] Length = 422 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 189/369 (51%), Gaps = 7/369 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72 LSE G VN T +Q+ + L+ KDVL AQTG+GKT AFGL L + + R + + Sbjct: 20 TLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANS 79 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV L+ T + + GG S+ + L+ G I++ TP Sbjct: 80 KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A +D + V + N + V + + ++ + +VF Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368 LE V++ ++ E+ +HR GRTGRAG G++V ++ + Q + E + R N + Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWL 379 Query: 369 --WEPAPSV 375 +EP+P V Sbjct: 380 KGFEPSPVV 388 >gi|221108888|ref|XP_002166443.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 789 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/373 (32%), Positives = 193/373 (51%), Gaps = 28/373 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I + + GY + T +Q + L +D++ A+TGSGKT AF + L T L Sbjct: 367 SLPNDILDVILSLGYTDPTPIQRQAIPIGLMNRDIIGIAETGSGKTAAFVIPLLVWITGL 426 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E+DR S + + P A+ +APTRELA Q+ E K G+ IGG+S + L+ Sbjct: 427 PESDRQSVSDNGPFAIILAPTRELAQQIEEETIKFAKKLGIRTVAVIGGLSREDQGFQLR 486 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VV+DEAD M+D+GF D++ IL+ P Sbjct: 487 LGCEIVIATPGRLIDVLENRYLVLSQCSYVVMDEADRMIDMGFEPDVQKILEHLPVTNIK 546 Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217 K R+ +MF+AT+ P + LA+ Y + V I S + Sbjct: 547 PDTEEAEDVNVIAKNYSSKDKYRQTVMFTATMPPVVERLARTYLRRPAIVTIGSAGKPVD 606 Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 ++ + +++ + + ++ IL +VF + + K L + F L G Sbjct: 607 RVEQKVYMLSAAQKKKKLLEILSNKLDPPVLVFVNQKKGADVLAKSLEKQGFSATTLHGG 666 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 Q++R AL +++G + +ATDVA RGID+ D+ +VI+ +++ N E+ HR GRTGR Sbjct: 667 KGQEQREFALNSLKEGNKDILVATDVAGRGIDIKDVSMVINYDMAKNIESYTHRIGRTGR 726 Query: 338 AGRKGMSVFVIPQ 350 AG+ G++V + Q Sbjct: 727 AGKSGIAVTFLTQ 739 >gi|290957574|ref|YP_003488756.1| helicase [Streptomyces scabiei 87.22] gi|260647100|emb|CBG70199.1| putative helicase [Streptomyces scabiei 87.22] Length = 865 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 185/351 (52%), Gaps = 16/351 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67 EAL G + +QE L L D++ A+TG+GKT+ FGL L ++ D Sbjct: 41 TAEALEAVGIITPFPIQEMTLPVALTGTDIIGQAKTGTGKTLGFGLPLLERVVVPADVEA 100 Query: 68 -RFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 R P +P AL + PTREL QV +L V V GG + + L+ Sbjct: 101 GRAKPEDLVDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKK 160 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +V+GTPGRL D K LN+ ++K +VLDEADEMLDLGF D+E I++ P +R+ + Sbjct: 161 GVDVVIGTPGRLLDLAGQKKLNLKNVKCLVLDEADEMLDLGFLPDVEKIINMLPARRQTM 220 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVN 237 +FSAT+ A+ LA+ Y + S + R S YRA + D+ + Sbjct: 221 LFSATMPGAVIGLARRYMSQPTHIRATSPDDEGATVRNTSQHIYRAHNM---DKPELVAR 277 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL+ G +VFC T+ + + L + F A+ G+L Q R AL+ R+G+ V Sbjct: 278 ILQADGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDV 337 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + TDVAARGID+ + VI+ + + + LHR GRTGRAG KG+++ ++ Sbjct: 338 LVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGIAITLV 388 >gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila] gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila SB210] Length = 744 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 203/379 (53%), Gaps = 19/379 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-- 70 E L++RG L +QE KD++ +TGSGKT+ F L L L E + S Sbjct: 81 EILNKRGITYLFPIQEHCFQAIQAGKDLIGKDRTGSGKTLGFSLPLIEKLRNEGNFTSIK 140 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L + PTREL +QV E+ L + V GGV V + +++G IVV Sbjct: 141 KKQTPYMLVVVPTRELCIQVANEINTLKHTDNEFRVLQIYGGVDVREQANQIRDGVEIVV 200 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-----DSSPKKRRMLM 184 GTPGR+ D L + A VLDEAD+ML+ GF++DIE I D ++ + L+ Sbjct: 201 GTPGRIIDQYERGALMFHSIIATVLDEADQMLNFGFQEDIEKIFGFIKNDKGEERPQNLL 260 Query: 185 FSATISPAITTLAKNY-QKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVN-ILR 240 FSAT+ + +A+ + ++D V +++ N+ D+ + A+ R AI + IL Sbjct: 261 FSATMPSWVHDIARKFLREDRVLIDLVKNLGNKTSQDVTHLAINCPYFQRTEAIGDVILC 320 Query: 241 YHGAKNA--IVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARV 297 Y G ++ I+FC T+ + +L ++ Q V L G++ Q++R Q R+G+ + Sbjct: 321 YGGGAHSRVIIFCETKNEANEI--MLKANIKQDVQVLHGDIPQKQREITFQGFREGKFKC 378 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +AT+VAARG+D+P+++L++ E + +HRSGRTGRAG+KG+ + + Q E Sbjct: 379 LVATNVAARGLDIPEVDLIVQLEPPKELDAYIHRSGRTGRAGKKGVCITFYTKKQQSLIE 438 Query: 358 RLFREANVSV--VWEPAPS 374 R+ ++ ++ + V P P+ Sbjct: 439 RIEKKCHIKMQKVGAPQPA 457 >gi|170758353|ref|YP_001787402.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str. Loch Maree] gi|169405342|gb|ACA53753.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium botulinum A3 str. Loch Maree] Length = 376 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 115/319 (36%), Positives = 178/319 (55%), Gaps = 13/319 (4%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWL 97 DV+ AQTG+GKT+AF LL + SP +A L I PTRELA+Q+ E L Sbjct: 41 DVIAEAQTGTGKTLAF-------LLPMFENISPNINAIQGLIITPTRELAIQITEEAMKL 93 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + + GG + + + L+N H+V+ TPGRL DH+ LN LK +VLDEA Sbjct: 94 KKAKDLNILAAYGGKDIGSQIKKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEA 153 Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217 DEML +GF++++ I++++P+KR+ L FSAT++ + LA +D + I E Sbjct: 154 DEMLLMGFKNEVRSIIENTPRKRQTLCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLK 213 Query: 218 DIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275 +I + VL+ +DR + IL AI+FC T+ V + L + + L Sbjct: 214 NI--KQVLIETTDRRKQEDLCKILNEENPFMAIIFCRTKRRVDNLEEDLYKKGYNCEKLH 271 Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335 G ++Q +R ++ ++ + IATDVAARG+D+ + V + ++ N E+ +HR GRT Sbjct: 272 GSMTQPKRERIMRSFKNLEIQYLIATDVAARGLDITGVTHVFNYDIPENSESYIHRIGRT 331 Query: 336 GRAGRKGMS-VFVIPQNMQ 353 GRAG KG + +FV P++ Q Sbjct: 332 GRAGEKGYTFLFVAPKDEQ 350 >gi|300855475|ref|YP_003780459.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528] gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528] Length = 369 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 115/353 (32%), Positives = 187/353 (52%), Gaps = 9/353 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I E L G T +Q+ + KDV+ AQTG+GKT+AF L + + Sbjct: 12 IINE-LKHMGITKPTPIQQESIKFIREGKDVIAEAQTGTGKTLAFLLPIFENI------- 63 Query: 70 SP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SP ++ AL + PTRELA+Q+ E L + + GG + + + L+ H++ Sbjct: 64 SPNINSTQALIVTPTRELAIQITEEALKLKKAKDINILAAYGGKDIGSQLKKLKRNIHLI 123 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH+ K +++S LK +VLDEAD+ML +GF++D+E I+ KKR+ L FSAT Sbjct: 124 IATPGRLLDHLHRKTIDLSKLKTLVLDEADQMLLMGFKNDVEDIIKEVSKKRQTLCFSAT 183 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + LA Y D + V+I E ++I + + +A+ NI+ AI Sbjct: 184 MNSDVKKLAYRYMTDPLVVSIKKEKVTLNNIKQYVIETTDRKKQDALCNIIDQDNPFMAI 243 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC T+ V L + + L ++ Q +R ++ R+ + IATDVAARG+ Sbjct: 244 IFCRTKRRVDDLEIALYQRGYNCKKLHSDIPQSKRERIMKSFRNADIQYLIATDVAARGL 303 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 D+ + + + ++ N E+ +HR GRTGRAG +G + + +R E + R Sbjct: 304 DISGVTHIYNYDIPENVESYIHRIGRTGRAGEEGCTCLFVDPKDKRTLEEIER 356 >gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966] gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966] Length = 470 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 193/342 (56%), Gaps = 9/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EA + + T +Q + L+ +DV+ AQTGSGKT AF + + L ++ R Sbjct: 36 ICEACEKLHFSAPTDIQAQAIPHALQGRDVIGLAQTGSGKTAAFSIPILQGLW-DDPR-- 92 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 PL A +APTREL+ Q+ +++E L A GV A +GG+ + + L H++V Sbjct: 93 ----PLFACILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMTQSIALSKRPHVIV 148 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG ++ L+ +V+DEAD +LDL F I+ +L + PK+RR ++FSAT Sbjct: 149 ATPGRLQDHLENTKGFSLRSLRYLVMDEADRLLDLDFGPIIDKLLQNIPKERRTMLFSAT 208 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + ++ VR+ I ++ S + + + + +D +V++ + I Sbjct: 209 MTTKVAKLQRASLRNPVRIEIGTKYSTVSTLQQYYLFMPFAHKDTYLVHLANEQVGHSII 268 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T R +L F + L G+LSQ R AL + G + + TDVAARG+ Sbjct: 269 VFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSIMVCTDVAARGL 328 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 D+P ++LV++ ++ ++ ++ +HR GRT RAGR+G SV ++ Q Sbjct: 329 DIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQ 370 >gi|254974450|ref|ZP_05270922.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-66c26] gi|255091842|ref|ZP_05321320.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP 107932] gi|255099944|ref|ZP_05328921.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-63q42] gi|255305833|ref|ZP_05350005.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC 43255] gi|255313577|ref|ZP_05355160.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-76w55] gi|255516261|ref|ZP_05383937.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-97b34] gi|255649358|ref|ZP_05396260.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-37x79] gi|260682530|ref|YP_003213815.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196] gi|260686129|ref|YP_003217262.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291] gi|260208693|emb|CBA61492.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196] gi|260212145|emb|CBE02789.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291] Length = 375 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 190/355 (53%), Gaps = 14/355 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73 L + G T +Q+ + KDV+ AQTG+GKT+AF L + + L ND Sbjct: 22 LKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDIND------ 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L ++PTRELA+Q+ E L V + GG + + + L+ H+++ TPG Sbjct: 76 -IQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLKGNIHMIIATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ K +++S LK VLDEAD+ML +GF++++E IL + K++ L FSATI+ + Sbjct: 135 RLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFSATINSQV 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA Y K+ V V+I E ++I V + +A+ +L AI+FC T Sbjct: 195 KKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFMAIIFCRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + LA + L +++Q +R ++ R+ + IATDVA+RG+D+ + Sbjct: 255 KRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLDISGV 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367 + + +L PE+ +HR GRTGRAG +G + F+ P+N ER+ E ++ Sbjct: 315 SHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKN-----ERMLSEIETAI 364 >gi|327393211|dbj|BAK10633.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355] Length = 449 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 192/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q + L +D+L SAQTG+GKT F L L L A Sbjct: 15 AVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQKLSANTGAVRGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG + + V GGVS++ + L+ G I+V TPG Sbjct: 75 PVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLA+ + +V +A N + + V + + ++ + +VF T Sbjct: 195 KTLAEKLLHNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSQLIGEGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV- 368 V++ EL + E+ +HR GRTGRA G++ V V + R ERL RE V Sbjct: 315 PHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427] gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM 5427] Length = 371 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 127/386 (32%), Positives = 197/386 (51%), Gaps = 26/386 (6%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I L + G T +Q+ + L KDV+ AQTG+GKT+AF L L L +++ Sbjct: 10 PEMINH-LKKSGITIPTPIQDQTIPLILSGKDVIGEAQTGTGKTLAFLLPLFEKLSSKSP 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AL ++PTRELA+Q+ +E + L + + GG + + L H+ Sbjct: 69 NIQ------ALVLSPTRELAIQITQEAKKLAEAKAIGILPIYGGQDTAMQLKKLGKPVHL 122 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 V+ TPGRL DHI K +++S VLDEAD+ML +GF++D+E I PKKR+ L FSA Sbjct: 123 VIATPGRLLDHIGRKSIDLSKTTTFVLDEADQMLLMGFKNDVESITKQLPKKRQTLCFSA 182 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ + LA Y V IA + I V + A++ +L A Sbjct: 183 TMDAPVKKLAYRYTSSPTTVTIAKKKITIEAIHQEIVETTDRHKQAALLQVLSEDNPYMA 242 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+FC T+ V + + + + V L ++ Q +R ++ + G + IATDVAARG Sbjct: 243 IIFCRTKRRVEVLYEAMKDKDYNCVRLHSDILQSKRERIMKSFKKGDIQYLIATDVAARG 302 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVS 366 +D+ + + + ++ PE +HR GRTGRAG G + +F+ P+N + +E Sbjct: 303 LDISGVTHIYNYDVPETPEAYIHRIGRTGRAGNDGYTCMFMSPKNEKEVSE--------- 353 Query: 367 VVWEPAPSVEA-IRERDAQRILQDPL 391 +EA IR + +RILQD L Sbjct: 354 --------IEAHIRFKIPRRILQDIL 371 >gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy] Length = 653 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 127/346 (36%), Positives = 190/346 (54%), Gaps = 11/346 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ RFS Sbjct: 233 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 292 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTREL Q+ E T V V GGVS + R++ G +++ GT Sbjct: 293 LQEPEALIVAPTRELINQIYLEARKFSFGTCVRPVVVYGGVSTAHQIREISRGCNVLCGT 352 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + +S L+ +VLDEAD MLD+GF D+ ++ S S + R+ LMFS Sbjct: 353 PGRLLDVIGRGK-VGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 411 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I +A ++ K D + + + SD++ V V + ++++L+ G + Sbjct: 412 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKTTGTE 471 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ G+ Q+ER AL R G+ V +AT VAA Sbjct: 472 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 531 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 RG+D+PD++ V++ +L SN + +HR GRTGR G G +V F P+ Sbjct: 532 RGLDIPDVQHVVNFDLPSNIDEYVHRIGRTGRCGNTGRAVSFYDPE 577 >gi|325983695|ref|YP_004296097.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp. AL212] gi|325533214|gb|ADZ27935.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212] Length = 445 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 201/372 (54%), Gaps = 8/372 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ERGY T +Q+ + L D+L AQTG+GKT F L + L ++ + Sbjct: 15 AVTERGYTVPTPIQKQAIPAVLTGADLLAGAQTGTGKTAGFTLPILHRLSDKSVKGPSTG 74 Query: 74 APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL + PTRELA QV + + + IGGV+++ + L++ I+V T Sbjct: 75 RPPIRALILVPTRELAAQVEESVRDYGKYLKLSSMMMIGGVNINPQITRLKSRVDILVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ K L++S ++ +VLDEAD MLD+GF DI+ IL PK+R+ L+FSAT S Sbjct: 135 PGRLLDHVQQKTLSLSQIEILVLDEADRMLDMGFIRDIKKILALLPKQRQNLLFSATFSD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + + A N + + V + + + ++++ HG +VF Sbjct: 195 EIRALADSLLNQPALIEAARRNAIADKVTHVVHPVDRERKRHLLAHLIKQHGWSQVLVFT 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ ++ + L +A+ G SQ R+ AL + G +V +ATD+AARGID+ Sbjct: 255 RTKHGANKLAEFLTADGIPALAIHGNKSQTARTTALAKFKTGSLQVLVATDIAARGIDIN 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE---ANV 365 +L V++ EL PE+ +HR GRTGRAG +G +V ++ + E+L + ++V Sbjct: 315 ELPHVVNFELPQVPEDYVHRIGRTGRAGAEGDAVSLVCVDELKLLTAIEKLIKHELRSHV 374 Query: 366 SVVWEPAPSVEA 377 +EP P ++A Sbjct: 375 IAGFEPDPRIKA 386 >gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida U112] gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella tularensis subsp. novicida FTE] gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112] gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis subsp. novicida FTE] Length = 441 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 184/343 (53%), Gaps = 10/343 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL A+ Sbjct: 11 LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQ 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G Sbjct: 71 ANRIK------TLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D + L VLDEAD MLD+GF +D++ I PKK + LMF Sbjct: 125 EILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I LA + + V+ N I + + S++ NA++++++ Sbjct: 185 SATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLH 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AA Sbjct: 245 QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ L VI+ +L + E+ +HR GRTGRAG++G+++ ++ Sbjct: 305 RGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLV 347 >gi|310767076|gb|ADP12026.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617] Length = 469 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 197/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q + L +D++ SAQTG+GKT F L L L + N Sbjct: 15 AVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG ++ + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D L++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCS 252 LA+ + +V +A N + LV R ++++L G + +VF Sbjct: 195 KILAEKLLHNPEQVEVARRNTASEQVTQHVHLVD-KKRKRELLSLLIGRGNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL +DG+ RV +ATD+AARGID+ + Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLVATDIAARGIDIEE 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ER+ RE + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERVLKREIPRMAI 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 DGFEPDPSIKA 384 >gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus] Length = 639 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 201/377 (53%), Gaps = 12/377 (3%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 ++ FE N P + E + +GY T +Q L +D++ AQTGSGKT+ + L Sbjct: 137 IQYFEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILP- 195 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117 A + R S P+ L +APTRELA Q+ +E+ + +T V CI GG + Sbjct: 196 AIVHIIHQPRLSNGDGPIVLVLAPTRELAQQI-QEVANCFGETAAVRNTCIFGGAPKGPQ 254 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 DL+ G I + TPGRL D + N+ +VLDEAD MLD+GF I I++ Sbjct: 255 AHDLERGIEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 314 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236 R++LM+SAT + LA+++ D V +NI S + +I + ++D+ + Sbjct: 315 PDRQVLMWSATWPKEVRALAEDFLTDYVHLNIGSLTLSANHNITQIIDVCHEYEKDSKLY 374 Query: 237 NILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 +L+ G + I+F T+ V T+ + +Q V++ G+ +QQER + LQ R G Sbjct: 375 RLLQEIGTEKENKTIIFVETKRKVDDITRNIRRDGWQAVSIHGDKNQQERDHVLQEFRSG 434 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352 RA + +ATDVAARG+D+ D++ VI+ + S+ E+ +HR GRTGR + G + F NM Sbjct: 435 RAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNM 494 Query: 353 QRRAE--RLFREANVSV 367 + + + REA +V Sbjct: 495 KHAGDLIEVLREAGQNV 511 >gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3] gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3] Length = 551 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 115/336 (34%), Positives = 182/336 (54%), Gaps = 2/336 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ +GY + +QE + L KDV+ +AQTG+GKT F L + LL++ R Sbjct: 14 KAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE-LLSKGPRVRQN 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV + + +V GGV ++ + + L+ G+ ++V TP Sbjct: 73 QV-RALVLTPTRELAAQVNGSVVKYGLNLPLTSSVVFGGVKINPQMQKLRKGSDVLVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + L+ +VLDEAD MLD+GF DI IL PKKR+ L+FSAT S Sbjct: 132 GRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFSATFSDD 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +LAK + V ++++ N ++ V + + +++ + + +VF Sbjct: 192 IRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKKKSPMLAKLIKDNDWRQVLVFSK 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ ++ + L E + G SQ R+ AL+ + G+ RV +ATD+AARGID+P Sbjct: 252 TKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQ 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 312 LPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLV 347 >gi|117620037|ref|YP_857223.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561444|gb|ABK38392.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 408 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 122/335 (36%), Positives = 184/335 (54%), Gaps = 7/335 (2%) Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 +T VQ+ + R +DVL SAQTG+GKT AF L + L+ P++A + L + P Sbjct: 1 MTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQRLVDNPAPVQPSNARV-LILTP 59 Query: 83 TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142 TRELA QV + + GG + R L+ GAHI+V TPGRL +H+ Sbjct: 60 TRELAAQVASNINDFAKHLDITTLTIYGGGKQDVQARKLKAGAHIIVATPGRLLEHLTAC 119 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 L++S ++ +VLDEAD +LD+GF D++ IL + K R+ L+FSAT S A+ LA N Sbjct: 120 NLSLSGVECLVLDEADRILDMGFSADVQQILQAVNKTRQNLLFSATFSEAVKKLA-NLML 178 Query: 203 DAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259 D + I S N+Q+S D + V + + ++ +VF STR S Sbjct: 179 D--KPQIVSVNKQNSTADTVSHTVYPVEQKRKRELLSELIGKQNWPQVLVFASTRESCDE 236 Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 L + + G+ +Q R AL+ +G+ RV +AT+VAARG+D+PDLE V++ Sbjct: 237 LVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVATEVAARGLDIPDLEYVVNY 296 Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 +L E+ +HR GRTGRAG+ GM++ + + +R Sbjct: 297 DLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEER 331 >gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina 98AG31] Length = 537 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 190/359 (52%), Gaps = 6/359 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P I + + G+ + +Q L +DV+ + TGSGKT+AF L A + Sbjct: 114 FPDYIMAEIRKAGFTEPSPIQCQAWPMALSGRDVVAISATGSGKTIAFSLP-AMIHINAQ 172 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +P P+ L +APTRELAVQ+ E A + + GGV ++ RDL GA Sbjct: 173 PLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDLSRGAE 232 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ TPGRL D + + N+ + +V+DEAD MLD+GF I+ IL+ R+ LMFS Sbjct: 233 IVIATPGRLIDMLESRRTNLQRVTYLVMDEADRMLDMGFEPQIKKILEQIRPDRQTLMFS 292 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGA 244 AT I LA Y KD ++VN+ S ++++ ++ SD + ++ L A Sbjct: 293 ATWPKEIQRLANEYLKDFIQVNVGSLELT-ANVNITQIVEVCSDFEKKGKLIKHLEKISA 351 Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++A ++F T+ TK L + + +A+ G+ Q ER L + GR+ + IATD Sbjct: 352 ESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQTERDWVLGEFKSGRSPIMIATD 411 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VA+RG+D+ D+ VI+ ++ + E+ +HR GRTGRAGR G + I + + A L + Sbjct: 412 VASRGLDVKDVAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQGKLARELVK 470 >gi|313812224|gb|EFS49938.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1] Length = 491 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 26 GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 86 PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFR 139 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ A+ L + Y + V + + + + + A + ++ + I Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATD Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+ Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377 Query: 363 ANVSVV 368 A V V Sbjct: 378 AGVKPV 383 >gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1] gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase domain-containing protein [Xylella fastidiosa M23] gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1] gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23] gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 446 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 197/367 (53%), Gaps = 6/367 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALSE+GY T +Q+ + L D+L +AQTG+GKT AFGL + L+A + A Sbjct: 15 ALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQRLMAASSNVG-AG 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L V AV GGV + + L+ G +++ PG Sbjct: 74 KPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S + +VLDEAD MLD+GF I+ IL P++ R+ L+FSAT + Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNRQTLLFSATFAEP 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V +AS N I +R V +S + ++ +L + +VF Sbjct: 194 IKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLAQDSREQTLVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L ++ + A+ G +Q +R AL + GR V +ATD+AARGID+ Sbjct: 254 TKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-REANVSVV 368 L VI+ +L E+ +HR GRTGR G +G ++ ++ Q + R+ RL R+ ++ V Sbjct: 314 LPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIVRLLDRDMDIRDV 373 Query: 369 WEPAPSV 375 + P V Sbjct: 374 PDFEPQV 380 >gi|300779595|ref|ZP_07089451.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC 33030] gi|300533705|gb|EFK54764.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC 33030] Length = 440 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 126/341 (36%), Positives = 184/341 (53%), Gaps = 4/341 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL E G + S+QE L L +D++ A+TG GKT AFG+ L + + Sbjct: 17 IVEALGESGIERVFSIQELTLPLALAGRDLIGQARTGMGKTFAFGVPLLDRVFDDAAIEE 76 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELAVQV +L +KT V + GG + L+ G +VVG Sbjct: 77 LDGTPRALVITPTRELAVQVSEDLTLAASKTPVRLTTIYGGRPYDEQLNALEAGVDVVVG 136 Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D H RG L + + +VLDEADEMLDLGF DI+ + + + + ++FSAT+ Sbjct: 137 TPGRLLDLHERGD-LVLDRVAILVLDEADEMLDLGFLPDIQRLWGALSQPLQTMLFSATM 195 Query: 190 SPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNA 247 I LA+ V + S ++ Q D + V V+ D+ + +L+ G Sbjct: 196 PAPILKLAREMMNKPVHIRAESADSSQLHDTTKQVVFVSHKMDKPEVVARVLQADGRGRT 255 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + + + +A F V ++ G+L Q R +L+ R G + +ATDVAARG Sbjct: 256 IIFTRTKRTAAEVAEDVARRGFAVGSVHGDLGQSARERSLEAFRKGDVEILVATDVAARG 315 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ID+ D+ VI+ + +P +HR GRTGRAGR G +V ++ Sbjct: 316 IDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGRTGTAVTLV 356 >gi|258546120|ref|ZP_05706354.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC 15826] gi|258518545|gb|EEV87404.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC 15826] Length = 444 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 191/347 (55%), Gaps = 6/347 (1%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P I EAL + + T +QE L L DV+ AQTG+GKT AF ++L Sbjct: 11 FSSLPIHPAIQEALEDNRLTHTTPIQEKTLPLTLGGHDVMGLAQTGTGKTAAFLISLYHY 70 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 LL N A P A+ +APTRELAVQ+ ++ + + A TG+ GGVS+ +R L Sbjct: 71 LLT-NPVHPKAKGPWAIVLAPTRELAVQIKKDADQIGAYTGLNSLAIYGGVSMEHQRNLL 129 Query: 122 QNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--K 178 +N I++GTPGR+ D + K + + +++ VLDEAD M DLGF DD+ ++L P Sbjct: 130 ENAPIDIIIGTPGRIIDLYKQKIIRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAH 189 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R L+FSAT++ + LA Y V+I S +I A ++ ++ + Sbjct: 190 ERLNLLFSATMAQKVQELAYEYFNAPETVSIESGQATADNITQILYHTAKHEKTPLLIGL 249 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L +++F +T+ + R + VL + + ALSG++ Q++R ++ + G + Sbjct: 250 LNRDKPARSMIFLNTKRDLERLSVVLEANGYPNAALSGDIPQKKREKIIKDFQSGAVNIV 309 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+ +PD+ V + +L E+ +HR GRT RAG G ++ Sbjct: 310 VATDVAARGLHIPDVTHVFNYDLPQVAEDYVHRIGRTARAGASGTAI 356 >gi|241563473|ref|XP_002401718.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] gi|215501910|gb|EEC11404.1| ATP-dependent RNA helicase, putative [Ixodes scapularis] Length = 371 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 193/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 1 MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLID 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 60 SFIK--------NKTTALILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQ 111 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P+KR Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKR 171 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I L++ Y + VR+ + + N+ ++I ++ ++ ++ + + L Sbjct: 172 QVLMFSATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKFSELTKQLG 231 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + I+F T+ S + K+L + A+ G+LSQ +R + R R+ +A Sbjct: 232 NREG-SVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVA 290 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIR 345 >gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG] gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG] Length = 441 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 184/343 (53%), Gaps = 10/343 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL A+ Sbjct: 11 LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQ 70 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G Sbjct: 71 ANRIK------TLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGV 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGRL D + L VLDEAD MLD+GF +D++ I PKK + LMF Sbjct: 125 EILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I LA + + V+ N I + + S++ NA++++++ Sbjct: 185 SATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLH 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AA Sbjct: 245 QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ L VI+ +L + E+ +HR GRTGRAG++G+++ ++ Sbjct: 305 RGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLV 347 >gi|119963413|ref|YP_949241.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1] gi|119950272|gb|ABM09183.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1] Length = 576 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 125/365 (34%), Positives = 189/365 (51%), Gaps = 4/365 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66 P+ I E+L+ G +Q L L +DVL +TGSGKT+AF + L + L E Sbjct: 13 PKPIAESLAADGIEEAFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPLVARLAEREA 72 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F P+ L +APTRELA Q+ +E L G+ V GG+S R+ + L+ G Sbjct: 73 KHFRKPGRPMGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGISQARQEKALRAGVD 132 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ PGRL D IR + L + ++ VLDEAD M DLGF ++ ++D +P + + L+FS Sbjct: 133 IVIACPGRLEDLIRQRILTLEAVEVTVLDEADHMADLGFLPVVKKLMDMTPTQGQRLLFS 192 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245 AT+ + L Y + + ++ + +++ ++V + + IV + GA Sbjct: 193 ATLDNGVDKLVNRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIVEL--ASGAG 250 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ + K L + V L G LSQ R L +G RV +ATDVAA Sbjct: 251 RRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVRVLVATDVAA 310 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + D+ELVIH + + + LHRSGRT RAG G V + Q ++L + A V Sbjct: 311 RGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDVKKLMKAAGV 370 Query: 366 SVVWE 370 V +E Sbjct: 371 DVSFE 375 >gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2080] gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium HTCC2080] Length = 437 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 182/338 (53%), Gaps = 6/338 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ GY + +Q + L +DV+ +AQTG+GKT F L L L + PA Sbjct: 14 KAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLHGL----SKGQPA 69 Query: 73 SAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA QV ++ + AV GGV ++ + L+ G I++ Sbjct: 70 KANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRKGVDILIA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ L+ ++LDEAD MLD+GF DI I+ + P KR+ LMFSAT S Sbjct: 130 TPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQNLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + V + + + +V ++ H + +VF Sbjct: 190 EDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + Q A+ G SQ R+ AL + G+ RV +ATD+AARG+D+ Sbjct: 250 SRTKRGANRLAEFLDKKGIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L ++ +HR GRTGRAG G ++ ++ Sbjct: 310 EQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLV 347 >gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1] Length = 442 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 184/339 (54%), Gaps = 2/339 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL + Sbjct: 11 LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G I++ Sbjct: 69 AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L VLDEAD MLD+GF +D++ I PKK + LMFSAT Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + V+ N I + + S++ NA++++++ +V Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AARGID Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L VI+ +L + E+ +HR GRTGRAG++G+++ ++ Sbjct: 309 IAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLV 347 >gi|291616785|ref|YP_003519527.1| RhlE [Pantoea ananatis LMG 20103] gi|291151815|gb|ADD76399.1| RhlE [Pantoea ananatis LMG 20103] Length = 449 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 192/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q + L +D+L SAQTG+GKT F L L L A Sbjct: 15 AVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQKLSANTGAVRGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG + + V GGVS++ + L+ G I+V TPG Sbjct: 75 PVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLA+ + +V +A N + + V + + ++ + +VF T Sbjct: 195 KTLAEKLLHNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSQLIGEGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV- 368 V++ EL + E+ +HR GRTGRA G++ V V + R ERL RE V Sbjct: 315 PHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|317152754|ref|YP_004120802.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943005|gb|ADU62056.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 681 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/347 (34%), Positives = 194/347 (55%), Gaps = 7/347 (2%) Query: 3 IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 FE +P + +A G+ L VQ+ + L ++DV+V A+TGSGKT AF L L L Sbjct: 24 TFEALPDKLRKACDRAGWTKLMPVQQKAMPFLLEDRDVMVQARTGSGKTGAFVLPLLQKL 83 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 A + AL + PTRELA QV E L + G+ V GGV + + Sbjct: 84 DANLPQCQ------ALVMVPTRELARQVADEALMLSGEEGIGVVAVYGGVGYKEQLDAFR 137 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR- 181 +GA +VVGTPGR+ DH+ + L + HLK ++ DEAD ML +GF D+ + P+ R Sbjct: 138 DGAQLVVGTPGRILDHLVRRNLTLDHLKTLIFDEADRMLSVGFYPDMVEVKRYLPRTLRG 197 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 MFSAT ++ LA+ + ++++S+ S I ++ V VA ++ ++ ++ Sbjct: 198 AYMFSATFPQSVLRLAEEFMDKPEFLSLSSDEANISSIAHQFVEVAAMGKERKLIKLIEL 257 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +A++F +T+ +V +L++ F L+ +L+Q +R + + +++G+ R +AT Sbjct: 258 ENPTSALIFSNTKRNVEFTAALLSQFGFDAEGLTSDLTQGKRESLMARIKEGKLRFLVAT 317 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARGID+P+L V E +PE+ +HR+GRTGRAG G ++ ++ Sbjct: 318 DVAARGIDIPELSHVFMLEPPEDPESYVHRAGRTGRAGATGTAITLV 364 >gi|254566967|ref|XP_002490594.1| Nucleolar protein required for maturation of 18S rRNA [Pichia pastoris GS115] gi|238030390|emb|CAY68313.1| Nucleolar protein required for maturation of 18S rRNA [Pichia pastoris GS115] gi|328350981|emb|CCA37381.1| DEAD-box protein, putative RNA helicase similar to S. cerevisiae FAL1 (YDR021W) involved in rRNA processing [Pichia pastoris CBS 7435] Length = 396 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 107/335 (31%), Positives = 186/335 (55%), Gaps = 11/335 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q + L KD + AQ+G+GKT F + + + + + A+ Sbjct: 42 GFEAPSAIQSRAIMQILTGKDTIAQAQSGTGKTATFSIGMLNVV------DTKKKDTQAI 95 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ ++ L + CIGG SV + + LQ G HIV GTPGR+CD Sbjct: 96 VLSPTRELAVQINNVIQNLGDYMNIHTYACIGGTSVGEDLKKLQKGQHIVSGTPGRVCDM 155 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ + LN+ ++K +VLDEADE++ GF++ I I + P ++++ SAT++ + + Sbjct: 156 IKRRNLNVRNVKMLVLDEADELMTKGFQEQIYDIYKTLPPSTQVVVVSATLTKEVLVMTN 215 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255 + D V++ + + I R + + + + ++ A++FC+T+ Sbjct: 216 KFMNDPVKILVKRDEVSLEGI--RQFYIQCEKEEWKFDTLCDLYDSLTVTQAVIFCNTKK 273 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 V T+ L + F VV++ G++ Q++R + R G +RV I+TDV ARGID+ + L Sbjct: 274 KVDWLTEHLRKANFTVVSMHGDMKQEDRDRIMNEFRLGNSRVLISTDVWARGIDVQQVSL 333 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 VI+ ++ EN +HR GR+GR GRKGM+V ++ + Sbjct: 334 VINYDIPFAKENYIHRIGRSGRFGRKGMAVNLVTE 368 >gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 547 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 120/359 (33%), Positives = 193/359 (53%), Gaps = 6/359 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P I + G+ + +Q L +DV+ + TGSGKT+AF + A + Sbjct: 120 FPDYIMSEIRNAGFNAPSPIQCQAWPMALSGRDVVAVSATGSGKTIAFSIP-AMIHINAQ 178 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +P P+ L +APTRELAVQ+ E A + + GGV ++ RDL GA Sbjct: 179 PLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDLTRGAE 238 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ TPGRL D + + N+ + +V+DEAD MLD+GF I+ I++ R+ LMFS Sbjct: 239 IVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIRPDRQTLMFS 298 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGA 244 AT + LA Y KD ++VN+ S + ++I+ ++ SD + ++ L + Sbjct: 299 ATWPKEVQRLASEYLKDFIQVNVGSLDLT-ANINITQIVEVCSDFEKRGKLIKHLEKISS 357 Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++A ++F T+ TK L + + +A+ G+ QQER L+ + GR+ + IATD Sbjct: 358 ESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGRSPIMIATD 417 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VA+RG+D+ D+ VI+ ++ + E+ +HR GRTGRAGR G + I + + A+ L + Sbjct: 418 VASRGLDVKDIAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQSKLAKELVK 476 >gi|255654878|ref|ZP_05400287.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-23m63] gi|296449624|ref|ZP_06891399.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08] gi|296878056|ref|ZP_06902072.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07] gi|296261522|gb|EFH08342.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08] gi|296430956|gb|EFH16787.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07] Length = 375 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 190/355 (53%), Gaps = 14/355 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73 L + G T +Q+ + KDV+ AQTG+GKT+AF L + + L ND Sbjct: 22 LKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDIND------ 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L ++PTRELA+Q+ E L V + GG + + + L+ H+++ TPG Sbjct: 76 -IQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLKGNIHMIIATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ K +++S LK VLDEAD+ML +GF++++E IL + K++ L FSATI+ + Sbjct: 135 RLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFSATINSQV 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA Y K+ V V+I E ++I V + +A+ +L AI+FC T Sbjct: 195 KKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFMAIIFCRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + LA + L +++Q +R ++ R+ + IATDVA+RG+D+ + Sbjct: 255 KRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLDISGV 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367 + + +L PE+ +HR GRTGRAG +G + F+ P+N ER+ E ++ Sbjct: 315 SHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKN-----ERMLSEIETAI 364 >gi|14548160|gb|AAA93186.2| DEAD family RNA helicase [uncultured crenarchaeote 4B7] Length = 451 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 115/348 (33%), Positives = 189/348 (54%), Gaps = 12/348 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +KI E+I + ++ E G+ +Q + LR DV+ A TG+GKT AFG+ + Sbjct: 7 LKINEDIMR----SIKELGFTTPFPIQTQSIPELLRGNDVIGQAHTGTGKTAAFGIPMLQ 62 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 ++ L IAPTRELA+Q+ E++ + T + V GG + + Sbjct: 63 NIIH-------GGGIQGLVIAPTRELAMQITEEIKKVGKYTKIKVVTVYGGQGIGIQLDA 115 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ IVV TPGRL DH+ + ++K VVLDEAD MLD+GF +DIE++L P R Sbjct: 116 LRRKPEIVVATPGRLIDHLDNGSIRTDNIKHVVLDEADVMLDMGFIEDIEYVLQKIPGNR 175 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++SAT+ P I L+ Y +A + I S++ ID +++ ++ + + + Sbjct: 176 ITSLWSATMPPEILRLSDKYLNNAKNILIDSDDLSGEGIDQAFLVIKDREKHKYLTDFIN 235 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + + IVFCST+ + L + ++VV + G++SQ +R ++ R +A + +A Sbjct: 236 QNKGQ-VIVFCSTKIRTRNVARDLIKSRYKVVPIEGDMSQNKREYSMMKFRKNQADILVA 294 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+P + LV++ ++ + HR GRT RAG KG ++ ++ Sbjct: 295 TDVAARGIDVPRVGLVVNYDVPNQDMVYFHRIGRTARAGAKGKAITLV 342 >gi|156083174|ref|XP_001609071.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein [Babesia bovis T2Bo] gi|154796321|gb|EDO05503.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein [Babesia bovis] Length = 454 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 183/331 (55%), Gaps = 10/331 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q A + L +DV+ A TGSGKT AF + + LL + R + +AP+ Sbjct: 56 TPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQRI------YCVVLAPS 109 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142 REL Q+ + L + + V V IGGV + + L H++V +PGRL DH+ K Sbjct: 110 RELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPHVIVASPGRLADHVENTK 169 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G ++S +K +V+DEAD +L F ++++ I+ + P +R+ +FSAT++ ++ L K K Sbjct: 170 GFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQTFLFSATMTKKLSKLQKMALK 229 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 D + V + + ++D R +LV + + +L Y+ + AIVFC T R Sbjct: 230 DPISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAALLWYYATRTAIVFCKTCDGAQRCAA 289 Query: 263 VLAEHLFQV---VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 L F V L G+++Q +RS ALQ+ + G + +AT+V RG+DLP +ELVI+ Sbjct: 290 YLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGRGLDLPMVELVINF 349 Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ++ ++ +HR GRT RAGR G+++ V+ Q Sbjct: 350 DIPECSKDYIHRVGRTARAGRSGLALTVVTQ 380 >gi|71421123|ref|XP_811713.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL Brener] gi|70876408|gb|EAN89862.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi] Length = 622 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 127/376 (33%), Positives = 201/376 (53%), Gaps = 10/376 (2%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M +F ++ P I ++ + GY T +Q L +D++ A+TGSGKT+AF + Sbjct: 69 MLLFSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPA 128 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117 A ++A+ P P+AL +APTRELAVQ+ E + + + C+ GG + Sbjct: 129 ALHIMAQPP-VRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQ 187 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R L+ G H+ + TPGRL D + + N+ + +VLDEAD MLD+GF I I Sbjct: 188 IRTLRAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIR 247 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIV 236 R+ LMFSAT I LA ++Q+D +RV++ SE+ ++D+ ++V D+ + Sbjct: 248 SDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRLE 307 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRA 295 IL+ G + ++F T+ + L L V+A+ G+ Q +R L R Sbjct: 308 EILQKLGRQRVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDR 367 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQN 351 V +ATDVAARG+D+ +L++VI+ ++ +N E+ +HR GRTGRAG++G + + P Sbjct: 368 SVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYSFVSGADPSK 427 Query: 352 MQRRAERLFREANVSV 367 R L R AN V Sbjct: 428 TIRDLVDLLRRANQEV 443 >gi|197246501|gb|AAI69082.1| Ddx23 protein [Rattus norvegicus] Length = 798 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 375 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 434 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 435 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 494 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 495 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 554 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 555 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 614 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 615 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 674 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 675 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 734 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 735 RAGKSGVAITFL 746 >gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str. Silveira] Length = 474 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 188/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + P Sbjct: 61 EACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDK-----PQ 115 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L +APTRELA Q+ ++ E L + V AV +GG+ + + L HI+V TP Sbjct: 116 SM-FGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATP 174 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +V+DEAD +LDL F ++ IL PK+RR +FSAT+S Sbjct: 175 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSS 234 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+++S Q S + +++ +D ++ +L ++ IVF Sbjct: 235 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIVF 294 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 295 TRTVNETQRLANLLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDI 354 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P ++LV++ +L S+ + +HR GRT RAG+ G + ++ Q Sbjct: 355 PSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQ 394 >gi|262405028|ref|ZP_06081580.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586] gi|262348867|gb|EEY98008.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586] Length = 436 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQVI + L ++G+V T +Q L L +D+ AQTG+GKT+AF A + LL Sbjct: 18 PQVI-DGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73 Query: 68 RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +PA + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ L Sbjct: 74 --TPAAEGRAETQPRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLAKL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179 Q+G I++GT GR+ D + + N++H++AVVLDEAD M DLGF DI F+ PK Sbjct: 132 QSGVDILIGTTGRIIDFYKQRAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT+S + LA + + V + E + I + + + ++ Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLV 251 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 AI+F +T+ + LA +V L+G++ Q++R L+ G + + Sbjct: 252 EEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILV 311 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia J2315] gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia J2315] Length = 477 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 199/373 (53%), Gaps = 11/373 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + T AE+ Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHR-- 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 72 GAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT Sbjct: 132 ATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + +A N + + V + + +++R H +V Sbjct: 192 SDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID Sbjct: 252 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365 + L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 312 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 371 Query: 366 SVV--WEPAPSVE 376 V+ +EP P+ + Sbjct: 372 EVIAGFEPDPNAK 384 >gi|260175083|ref|ZP_05761495.1| putative ATP-dependent RNA helicase [Bacteroides sp. D2] gi|315923311|ref|ZP_07919551.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697186|gb|EFS34021.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 374 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 187/345 (54%), Gaps = 1/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + I +A+ E+GY T +Q + L ++D+L AQTG+GKT +F + + L Sbjct: 7 NITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQHL-QM 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N + AL + TRELA+Q+ + T V V GGV+ + L G Sbjct: 66 NKEAAKCRGIKALILTSTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDMLHKGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + +++ ++ VLDEAD MLD+GF DI+ IL PK+++ L F Sbjct: 126 DILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +L + K+ VR++I ++ I+ V ++ +V+IL+ + Sbjct: 186 SATMPDTIISLTNSLLKNPVRISITPKSSTVDAIEQMVYFVEKKEKSLLLVSILQKSEDQ 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + + K+L + A+ G SQ R AL + G+ RV +ATD+AA Sbjct: 246 SVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RGID+ +L LVI+ +L PE +HR GRTGRAG G ++ Q Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQ 350 >gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia MC0-3] Length = 486 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 199/373 (53%), Gaps = 11/373 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + T AE+ Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHR-- 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 72 GAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT Sbjct: 132 ATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + +A N + + V + + +++R H +V Sbjct: 192 SDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID Sbjct: 252 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365 + L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 312 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 371 Query: 366 SVV--WEPAPSVE 376 V+ +EP P+ + Sbjct: 372 EVIAGFEPDPNAK 384 >gi|71275478|ref|ZP_00651764.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Dixon] gi|71900655|ref|ZP_00682780.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|170729397|ref|YP_001774830.1| ATP-dependent RNA helicase [Xylella fastidiosa M12] gi|71163778|gb|EAO13494.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Dixon] gi|71729590|gb|EAO31696.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|167964190|gb|ACA11200.1| ATP-dependent RNA helicase [Xylella fastidiosa M12] Length = 446 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 197/367 (53%), Gaps = 6/367 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALSE+GY T +Q+ + L D+L +AQTG+GKT AFGL + L+A + A Sbjct: 15 ALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQRLMAASSNVG-AG 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L V AV GGV + + L+ G +++ PG Sbjct: 74 KPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S + +VLDEAD MLD+GF I+ IL P++ R+ L+FSAT + Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLHSIKRILGKLPRQNRQTLLFSATFAEP 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V +AS N I +R V +S + ++ +L + +VF Sbjct: 194 IKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLAQDSREQTLVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L ++ + A+ G +Q +R AL + GR V +ATD+AARGID+ Sbjct: 254 TKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-REANVSVV 368 L VI+ +L E+ +HR GRTGR G +G ++ ++ Q + R+ RL R+ ++ V Sbjct: 314 LPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIVRLLDRDMDIRDV 373 Query: 369 WEPAPSV 375 + P V Sbjct: 374 PDFEPQV 380 >gi|124430514|ref|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [Mus musculus] gi|148672229|gb|EDL04176.1| mCG18410, isoform CRA_a [Mus musculus] Length = 819 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 396 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 455 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 456 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 515 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 516 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 575 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 576 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 635 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 636 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 695 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 696 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 755 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 756 RAGKSGVAITFL 767 >gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC 10500] gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC 10500] Length = 478 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 194/347 (55%), Gaps = 11/347 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IPQ+ EA GY T++Q + L+ +D++ A+TGSGKT AF L + L+ + Sbjct: 60 IPQLC-EACDTLGYKAPTAIQTEAIPLALQNRDLIGLAETGSGKTAAFALPILQALMDKP 118 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F L +APTRELA Q+ E L + V V +GG+ + + + H Sbjct: 119 QPF------FGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPH 172 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+ KG ++ LK +V+DEAD +LD+ F I+ IL P++RR +F Sbjct: 173 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRTFLF 232 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT+S + L + + +RV+++S Q S + + + +D ++ +L H Sbjct: 233 SATMSSKVEGLQRASLSNPLRVSVSSNKYQTVSTLLQYYLFIPHKHKDVHLIWLLNEHVG 292 Query: 245 KNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++ I+F T R T +LA L F +AL G+LSQ R AL R + IATDV Sbjct: 293 QSVIIFTRTVHETMRLT-ILARALGFGAIALHGQLSQSARLGALGKFRSRSRDILIATDV 351 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 AARG+D+P ++LV++ +L+++ + +HR GRT RAG+ G ++ ++ Q Sbjct: 352 AARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQ 398 >gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1] gi|143462228|sp|A1CR32|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3 gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1] Length = 473 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 12/342 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA + GY T +Q + L+++D++ A+TGSGKT AF L + L+ + F Sbjct: 66 EACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSF--- 122 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+ + E L + V AV +GG+ + + L HI+V TP Sbjct: 123 ---FGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATP 179 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P++RR +FSAT+S Sbjct: 180 GRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKILPRERRTFLFSATMSS 239 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + +L + + +RV+++S Q YR + +D +V +L ++AI Sbjct: 240 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYR--FIPHKHKDIYLVYLLNEFVGQSAI 297 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T R + +L F + L G+LSQ R AL R + +ATDVAARG+ Sbjct: 298 IFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRDILVATDVAARGL 357 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 D+P +++V++ +L ++ + +HR GRT RAG+ G+++ + Q Sbjct: 358 DIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ 399 >gi|114644990|ref|XP_001159984.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 1 [Pan troglodytes] Length = 800 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 377 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 436 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 437 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 496 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 497 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 556 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 557 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 616 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 617 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 676 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 677 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 736 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 737 RAGKSGVAITFL 748 >gi|120610252|ref|YP_969930.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax citrulli AAC00-1] gi|120588716|gb|ABM32156.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1] Length = 446 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 131/340 (38%), Positives = 185/340 (54%), Gaps = 8/340 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSPASA-P 75 G+ T +Q + L DVL AQTGSGKT AFGL L LL A+ P P Sbjct: 20 GFDTPTPIQAQAIPAVLDGGDVLGRAQTGSGKTAAFGLPLLQRLLPQAQQAGARPGPRRP 79 Query: 76 LALAIAPTRELAVQVG---RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QVG R+L + +A+ GGVS++ + L+ GA VV TP Sbjct: 80 GALVLVPTRELAAQVGEVLRDLAGHLPGPRLKIAIACGGVSINPQLMALRGGADAVVATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + L++S ++A+VLDEAD +LDLGF ++++ +L P +R+ L+FSAT P Sbjct: 140 GRLLDLVEHNALSLSQVRALVLDEADRLLDLGFAEELQRVLALLPAQRQNLLFSATFEPG 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-GAKNAIVFC 251 + LA+ +D +R+ IA DI RA+ V R + +L G +VF Sbjct: 200 VARLAEGLLRDPLRIEIAGAPGTAPDIAQRAIAVEAPRRTQLLKQLLTQEPGWTRVLVFV 259 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T+ + + L + G LSQ R LQ RD R +V + TD+AARGID+ Sbjct: 260 ATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRDERWQVLVTTDLAARGIDIA 319 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 L V++ +L + +HR GRTGRAG G++V FV P+ Sbjct: 320 GLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTPE 359 >gi|307130576|ref|YP_003882592.1| putative ATP-dependent RNA helicase [Dickeya dadantii 3937] gi|306528105|gb|ADM98035.1| Putative ATP-dependent RNA helicase [Dickeya dadantii 3937] Length = 454 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 194/373 (52%), Gaps = 12/373 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T VQ + L +D++ SAQTG+GKT F L L L N R S A Sbjct: 15 AVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLL---NGRPSQAK 71 Query: 74 A--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P+ AL + PTRELA Q+G ++ + V GGVS++ + L+ G I++ Sbjct: 72 GRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILIA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D +++SH++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 132 TPGRLLDLEHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFS 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + V + N + V + + +++ H + +VF Sbjct: 192 DEIKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLIGKHDWRQVLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + A+ G SQ R+ AL +DG RV +ATD+AARG+D+ Sbjct: 252 TRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLVATDIAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFRE--ANV 365 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + + Sbjct: 312 DQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIERLLKREIPRM 371 Query: 366 SVV-WEPAPSVEA 377 + +EP P+++A Sbjct: 372 EIAGYEPDPTIKA 384 >gi|260433348|ref|ZP_05787319.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157] gi|260417176|gb|EEX10435.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157] Length = 416 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 4/354 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +AL+ + T +Q + + D+L AQTG+GKT+AFGL L LLA+ + + Sbjct: 13 LNDALARAKFTQPTPIQNQAIPLAMEGHDILGLAQTGTGKTLAFGLPLIDHLLAQPGKPA 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P +A AL +APTREL Q+ L L KT + VA +GG S++++ L G I+V Sbjct: 73 PKTAK-ALILAPTRELVNQIADSLRSLTTKTKLRVATVVGGQSINKQIMFLSRGTDILVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + +++ ++ +VLDEAD+MLD+GF + I R+ ++FSAT+ Sbjct: 132 TPGRLIDLMDRGAVDLGSVRRLVLDEADQMLDMGFIHALRRIAPELGTPRQTMLFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L++ Y + RV ++ + I V+ + + IL +VF Sbjct: 192 KQMEELSRAYLTNPQRVQVSPPGKAADKITQSVHFVSKPGKPEKLRQILSQDTDALTLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K L + ++ G SQ +R A++ R G V +ATDVAARGID+ Sbjct: 252 ARTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEITVLVATDVAARGIDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFR 361 P + VI+ +L P+N +HR GRT RAGR+G ++ F P ++ R+ ++L + Sbjct: 312 PGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEFDLLRQIQKLMK 365 >gi|242035801|ref|XP_002465295.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor] gi|241919149|gb|EER92293.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor] Length = 618 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/353 (34%), Positives = 182/353 (51%), Gaps = 9/353 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + L ERG V T +Q L L +D++ A TGSGKT+ F L L + E Sbjct: 180 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVAVQEE 239 Query: 67 DRFS--PASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRER 118 P P + I P+RELA Q +E + +CIGGV + + Sbjct: 240 ILMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRPLLCIGGVDMRTQL 299 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ G HIVV TPGRL D + K +N+ + + + LDEAD ++DLGF DDI+ + D Sbjct: 300 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 359 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AKN V VN+ + D+ V R ++ Sbjct: 360 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 419 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ ++FC +A V + L + VA+ G Q+ER NA+ + GR V Sbjct: 420 LQ-KTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 478 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +ATDVA++G+D PD++ VI+ ++ + EN +HR GRTGR G+ G++ I +N Sbjct: 479 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 531 >gi|154340487|ref|XP_001566200.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063519|emb|CAM39700.1| putative DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 389 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 118/332 (35%), Positives = 181/332 (54%), Gaps = 16/332 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77 GY T++Q+ + P L+ +DV+ A +G+GKT AF + L P + P A Sbjct: 36 GYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCLLQAC-------DPHTREPQA 88 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L ++PTRELAVQ + G+ CIGG S + R L+NG HIV GTPGR+ D Sbjct: 89 LILSPTRELAVQTQDLCNNIGHHMGLKAYACIGGKSTEEDIRRLENGVHIVSGTPGRVFD 148 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 IR K L ++ LK +VLDEADEML GF+ I I P ++++ SAT+ + + Sbjct: 149 MIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMIPP-LQIILVSATLPADVLEMT 207 Query: 198 KNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGA---KNAIVFCST 253 + + + + + R +D R V++ + N ++ + + +A+VFC+T Sbjct: 208 EKFMTEPASILV---KRDEITVDSVRQYFVSVDEEKNKFDVLMELYDSLTIAHAVVFCNT 264 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + K + F VVA+ G++ Q ER ++ RDG +RV I TD+ ARGID+ + Sbjct: 265 RKKVEQLAKKMTREKFTVVAMHGDMPQAERDEIMRQFRDGHSRVLITTDLWARGIDVERV 324 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LV++ +L E +HR GRTGR GR G+++ Sbjct: 325 SLVLNYDLPLAREQYIHRIGRTGRMGRTGLAI 356 >gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614] gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614] Length = 436 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/332 (35%), Positives = 183/332 (55%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+SE GY T +Q+ + L +D++ AQTG+GKT AFGL L L AE + P Sbjct: 16 AVSENGYDTPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPLIDRLQAEKKKAVPKG 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTREL Q+ + L T + V+ +GGVS++ + + L G I+V TPG Sbjct: 76 T-RALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRLSKGTDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + +++ +VLDEAD+MLDLGF + I KR+ L+FSAT+ I Sbjct: 135 RLLDLVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVADKRQTLLFSATMPKQI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA++Y ++ RV +A + + + + + + +V+ LR ++VFC T Sbjct: 195 NELAQSYLRNPERVEVAPAGKTADKVTQSVHFMDKNSKGDFLVDQLRDKPDGLSLVFCRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R + L+ ++ G SQ +R A++ +R+G V +ATDVAARGID+P + Sbjct: 255 KHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKELREGTINVLVATDVAARGIDIPGV 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V + EL E +HR GRT RAG +G ++ Sbjct: 315 SHVYNFELPEVAEAYVHRIGRTARAGAEGEAI 346 >gi|328948732|ref|YP_004366069.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489] gi|328449056|gb|AEB14772.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM 2489] Length = 699 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 127/365 (34%), Positives = 193/365 (52%), Gaps = 14/365 (3%) Query: 30 ILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQ 89 +LN D +V+ A+TG+GKT AFGL L L E+D A+ + PTRELA+Q Sbjct: 69 LLNGD---ANVIAKARTGTGKTAAFGLPLVQDLREESDHVR------AIILEPTRELAMQ 119 Query: 90 VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHL 149 E+ AV GG S+ + R L+ G IVVGTPGR+ D I L+IS + Sbjct: 120 TATEMASFTTGKYPRTAVVYGGASMGEQMRALRRGVEIVVGTPGRVQDLIDRGVLDISKI 179 Query: 150 KAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI 209 +LDE DEMLD+GF +DIE I + + + R+L+FSAT+ I +A+ + + V Sbjct: 180 DYFILDEGDEMLDMGFIEDIENIFECANQDCRVLLFSATVPKEILKIAQRFMGEYEIVEE 239 Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269 + I+ + ++ S++ +A+V ++ +VF ++ +K L E + Sbjct: 240 EGFEEEPLLIEQKYWVMRESEKVDALVRLIDISPDFFGLVFVQRKSDADYVSKSLDERGY 299 Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329 + AL G++ Q +R L R + R+ +ATDVAARGID+ + V++ EL + + Sbjct: 300 EAAALHGDIPQGQREKILARFRSKKTRILVATDVAARGIDIEGVTHVVNYELPFDGPTYV 359 Query: 330 HRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS----VVWEPAPSVEAIRERDAQ 384 HR GRTGRAG GM+V FV P+ +RR L S +V + PS+E + E Sbjct: 360 HRIGRTGRAGAAGMAVTFVKPEETRRRLNYLINTVKKSSKGEIVEDKVPSIEEVLEAKKS 419 Query: 385 RILQD 389 R+ D Sbjct: 420 RLFSD 424 >gi|126344320|ref|XP_001381629.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Monodelphis domestica] Length = 818 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 395 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 454 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 455 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 514 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 515 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 574 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 575 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 634 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 635 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 694 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 695 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 754 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 755 RAGKSGVAITFL 766 >gi|241949959|ref|XP_002417702.1| DEAD/DEAH box helicase , putative [Candida dubliniensis CD36] gi|223641040|emb|CAX45414.1| DEAD/DEAH box helicase , putative [Candida dubliniensis CD36] Length = 568 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 199/370 (53%), Gaps = 32/370 (8%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF----S 70 +S+ GY TSVQ A + L ++DV+ A+TGSGKT+AF + + + +L+ ++ + Sbjct: 170 ISQLGYDEPTSVQRASIPLALMKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEK 229 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129 ++ P+ L +APTRELA+Q+ +E E K G V IGG + Q G H++V Sbjct: 230 ISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHQYQDTINQIDQTGVHLIV 289 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------ 177 TPGRL D I K +++S +V+DEAD M+D+GF D+ ILD P Sbjct: 290 ATPGRLVDSIERKIIDLSKCYCLVMDEADRMIDMGFEKDLNKILDKLPTEKQLSSTIDGR 349 Query: 178 ----KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVAL 228 +KR +MF+ATISP + + K Y D + I A +N S ++ + A Sbjct: 350 IFHLEKRSTMMFTATISPTVEKITKKYLIDPGYLYIGGAGEALDNINQS-FEFLSSATAE 408 Query: 229 SDRDNAIVNILRYHG--AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284 + + N ++ I+R H +N I+F + + + L+ + V + G SQ R Sbjct: 409 ATKLNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSTELSSNDINNVVIHGSKSQDVRE 468 Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 A+ R+ + V IATDVAARGID+P++ LVI+ ++ + +HR GRTGRAG G S Sbjct: 469 QAITKFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGES 528 Query: 345 -VFVIPQNMQ 353 F+ Q+M+ Sbjct: 529 FTFISDQDME 538 >gi|193785886|dbj|BAG54673.1| unnamed protein product [Homo sapiens] Length = 800 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 377 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 436 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 437 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 496 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 497 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 556 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 557 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 616 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 617 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 676 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 677 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 736 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 737 RAGKSGVAITFL 748 >gi|62179387|ref|YP_215804.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127020|gb|AAX64723.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713858|gb|EFZ05429.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 453 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 191/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKESPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|117921047|ref|YP_870239.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. ANA-3] gi|117613379|gb|ABK48833.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 449 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 189/346 (54%), Gaps = 5/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ Q + ++L G T++QE L L KD++ S++TGSGKT+AF L +++ Sbjct: 7 SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAMQRVIST 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P L + PTRELA QV +L L A T +GG + + + + L Sbjct: 67 --RALTKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184 H +V TPGR+ DH+ K L ++ L+ +VLDEAD MLDLGF ++ I ++ KRR LM Sbjct: 125 HFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKRRQTLM 184 Query: 185 FSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242 FSAT+ + I +A K+ V I + + +H DI R L D A++ +L Sbjct: 185 FSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTRLLSDE 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K I+F +TRA R L+ F ALSGEL Q R+ + G+ ++ + TD Sbjct: 245 THKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VA+RG+DL ++ LVI+ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 305 VASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp. novicida GA99-3549] gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549] Length = 442 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 184/339 (54%), Gaps = 2/339 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 +I AL ++GY T +Q + L+ DV+ SAQTG+GKT F L + LL + Sbjct: 11 LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A+ L + PTRELA Q+ +++ A T + AV GGVS++ + L+ G I++ Sbjct: 69 AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L VLDEAD MLD+GF +D++ I PKK + LMFSAT Sbjct: 129 ATPGRLLDLYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + V+ N I + + S++ NA++++++ +V Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ ++ L A+ G SQ R+ AL + V +ATD+AARGID Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L VI+ +L + E+ +HR GRTGRAG++G+++ ++ Sbjct: 309 IAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLV 347 >gi|109096395|ref|XP_001104093.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 2 [Macaca mulatta] Length = 800 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 377 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 436 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 437 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 496 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 497 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 556 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 557 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 616 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 617 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 676 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 677 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 736 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 737 RAGKSGVAITFL 748 >gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa Japonica Group] gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group] Length = 597 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 180/317 (56%), Gaps = 8/317 (2%) Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133 P L +APTRELA QV +E++ K + VC+ GGVS + ++ L G +VVGTPG Sbjct: 20 PRVLVLAPTRELAKQVEKEIKESAPK---LSTVCVYGGVSYNVQQNALSRGVDVVVGTPG 76 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D I G L + +K +VLDEAD+ML +GF +D+E IL P +R+ ++FSAT+ + Sbjct: 77 RIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWV 136 Query: 194 TTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVF 250 L++ Y + + +++ + + I A+ + + + + +++ Y IVF Sbjct: 137 KKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVF 196 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L + AL G++SQ +R L R G+ V +ATDVAARG+D+ Sbjct: 197 TKTKRDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 255 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P+++L+IH EL ++PE +HRSGRTGRAG+ G ++ + + +R L R+ + Sbjct: 256 PNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFI 315 Query: 371 PAPSVEAIRERDAQRIL 387 P++E + E A+ ++ Sbjct: 316 SPPAIEDVLESSAEHVI 332 >gi|71898621|ref|ZP_00680791.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella fastidiosa Ann-1] Length = 446 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 197/367 (53%), Gaps = 6/367 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALSE+GY T +Q+ + L D+L +AQTG+GKT AFGL + L+A + A Sbjct: 15 ALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQRLMAASSNVG-AG 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L V AV GGV + + L+ G +++ PG Sbjct: 74 KPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S + +VLDEAD MLD+GF I+ IL P++ R+ L+FSAT + Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNRQTLLFSATFAEP 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V +AS N I +R V +S + ++ +L + +VF Sbjct: 194 IKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLAQDSREQTLVFVR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L ++ + A+ G +Q +R AL + GR V +ATD+AARGID+ Sbjct: 254 TKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-REANVSVV 368 L VI+ +L E+ +HR GRTGR G +G ++ ++ Q + R+ RL R+ ++ V Sbjct: 314 LPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIVRLLDRDMDIRDV 373 Query: 369 WEPAPSV 375 + P V Sbjct: 374 PDFEPQV 380 >gi|91087239|ref|XP_975511.1| PREDICTED: similar to eIF4AIII CG7483-PA [Tribolium castaneum] gi|270010579|gb|EFA07027.1| hypothetical protein TcasGA2_TC009998 [Tribolium castaneum] Length = 404 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 109/328 (33%), Positives = 185/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +A+ +L + L Sbjct: 50 GFEKPSAIQQRAIKPIIKGRDVIAQAQSGTGKTATFSIAILQSLDLQ------TRETQVL 103 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 104 CLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDM 163 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 164 IRRRALRTRSVKMLVLDEADEMLNKGFKEQIYDVYRFLPPSTQVVLISATLPHEILEITS 223 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 224 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 283 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E+ F V ++ G++ Q+ER N ++ R G++RV I TDV ARGID+ + LVI Sbjct: 284 DWLTEKMRENNFTVSSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 343 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 344 NYDLPNNRELYIHRIGRSGRFGRKGVAI 371 >gi|50843247|ref|YP_056474.1| ATP-dependent RNA helicase [Propionibacterium acnes KPA171202] gi|50840849|gb|AAT83516.1| ATP-dependent RNA helicase [Propionibacterium acnes KPA171202] Length = 700 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 195/365 (53%), Gaps = 11/365 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295 Query: 65 -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 296 REDNR------PRALILSPTRELAMQIADALSSLASSMGLSTILIAGGMSYGPQTKAFKR 349 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + L Sbjct: 350 GVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRL 409 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ A+ L + Y + V + + + + + A + ++ + I G Sbjct: 410 LFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRSG 469 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATDV Sbjct: 470 --HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDV 527 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+A Sbjct: 528 AARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQA 587 Query: 364 NVSVV 368 V V Sbjct: 588 GVKPV 592 >gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu] Length = 408 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 198/373 (53%), Gaps = 11/373 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69 +A++E GY + T +Q + L D+L AQTG+GKT F L + T AE+ Sbjct: 14 KAVNELGYTSPTPIQSQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHHHA 73 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 74 KRAVR--ALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALRRGVDIVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT Sbjct: 132 ATPGRLLDHMQQKTIDLSQLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATF 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + +A N + + V + + +++R H +V Sbjct: 192 SDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID Sbjct: 252 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365 + L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 312 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 371 Query: 366 SVV--WEPAPSVE 376 V+ +EP P+ + Sbjct: 372 EVIPGFEPDPNAK 384 >gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris gallopavo] Length = 1461 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 205/371 (55%), Gaps = 21/371 (5%) Query: 4 FENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P G + L RG L VQ +P KDV+ AQTG+GKT +F + L Sbjct: 872 FSNFPISKGTVQLLQARGVTYLFPVQVKTFHPVYSGKDVIAQAQTGTGKTFSFAIPLIEK 931 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L A++ +P L +APTRELA QV ++ + + K + VA GG + + + Sbjct: 932 LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRK--LTVACFYGGTPYNGQIDLI 989 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 ++G I+VGTPGR+ DH++ L+++ +K VVLDE D+MLD+GF + +E IL + KK Sbjct: 990 RSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDS 1049 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ Q + +++ A+ S R Sbjct: 1050 EDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRRTQKAATTVEHLAIECHWSQRAA 1109 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290 I ++++ Y G+ IVFC T+ + L + Q +L G++ Q++R L+ Sbjct: 1110 VIGDVIQVYSGSHGRTIVFCETKKDANEL--ALNASIKQDCQSLHGDIPQKQREITLKGF 1167 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 R+G +V +AT+VAARG+D+P+++LV+ + + E+ +HRSGRTGRAGR G+ + Sbjct: 1168 RNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICF--- 1224 Query: 351 NMQRRAERLFR 361 QR+ E R Sbjct: 1225 -YQRKEENQLR 1234 >gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581] Length = 446 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 113/336 (33%), Positives = 182/336 (54%), Gaps = 2/336 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ GY + +Q + L +DV+ +AQTG+GKT F L L L + + A Sbjct: 14 KAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLHGL--SKGQSAKA 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA QV ++ + AV GGV ++ + L+ G I++ TP Sbjct: 72 NQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRKGVDILIATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + ++ L+ ++LDEAD MLD+GF DI I+ + P KR+ LMFSAT S Sbjct: 132 GRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQNLMFSATFSED 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK + V +++ N + V + + + +V ++ H + +VF Sbjct: 192 IRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQVLVFSR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L + Q A+ G SQ R+ AL + G+ RV +ATD+AARG+D+ Sbjct: 252 TKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAARGLDIEQ 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L ++ +HR GRTGRAG G ++ ++ Sbjct: 312 LPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLV 347 >gi|88802750|ref|ZP_01118277.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P] gi|88781608|gb|EAR12786.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P] Length = 411 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 114/335 (34%), Positives = 192/335 (57%), Gaps = 2/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E + + VQ+ + L +K+V+VSAQTG+GKT AF L + L D Sbjct: 12 ILKAVAEERFQTPSLVQQEAIPLILEKKNVIVSAQTGTGKTAAFALPIIQLLFDGQDAEK 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +L I PTRELA+Q+ + + + + GGVS+ ++ L G I++ Sbjct: 72 GEKKIKSLIITPTRELAIQILENFKSFSKYSNLRASAVFGGVSLEPQKEILSKGIDILIA 131 Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D H +G +++S ++ VLDEAD MLD+GF +DI+ I PK+++ L+FSAT+ Sbjct: 132 TPGRLIDLHTQG-NIDLSAIEIFVLDEADLMLDMGFINDIKKIERFCPKQKQTLLFSATM 190 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LAK K V V I E +I + ++ + +N+L+ I+ Sbjct: 191 PEKIVELAKKVIKSPVVVEINPEETTAKNIGQLLYYLPKKNKTDLCLNLLKNTINGKIII 250 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ V + + L ++ ++V ++ G+ +Q R+ A++ ++ A + IATDVA+RGID Sbjct: 251 FRRTKFGVDKLEESLTKNGYKVASIHGDKTQGIRNKAIEDFKNKTAHILIATDVASRGID 310 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 + +++ +I+ ++ + PE +HR GRTGRAG+ G++ Sbjct: 311 ITNVDAIINFDIPNVPETYIHRIGRTGRAGKSGIA 345 >gi|187736504|ref|YP_001878616.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187426556|gb|ACD05835.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 400 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/333 (36%), Positives = 178/333 (53%), Gaps = 11/333 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + GY + T +QE + L +D++ ++QTG+GKT AF L L + R P Sbjct: 14 KAVEKCGYEHPTPIQEQAIPIILEGRDLIGASQTGTGKTAAFALPLLT-------RIQPI 66 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV TG+ VA+ GGV ++ DL+ GA IVV TP Sbjct: 67 GKPQILVLEPTRELADQVAESFAEYGEFTGLKVALLYGGVGYGKQTEDLKKGADIVVATP 126 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191 GRL DH + +KA+VLDE D MLD+GF + I++ P + R+ L FSAT+ P Sbjct: 127 GRLVDHFYRCTMRFGEVKALVLDEVDRMLDMGFLPIVRKIVNLCPWEGRQTLFFSATMPP 186 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I AK D V IA + I + VAL RD ++ +L+ ++ ++F Sbjct: 187 VIAGFAKWCLTDPAEVTIARREVA-ATISHAFYPVALDQRDELLLALLKGTDFRSVMIFT 245 Query: 252 STRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 TR +L H + +V + ++ Q+ER AL+ + G+ + +ATDVAARGID Sbjct: 246 RTRKEADAVCGMLKHHGYRGEVAVMHSDIPQKERMEALKGFKSGKYDILVATDVAARGID 305 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + + VI+ + N E+ +HR GRTGRA G Sbjct: 306 ISGVTHVINYRVPENAEDYVHRIGRTGRAEASG 338 >gi|157962445|ref|YP_001502479.1| DEAD/DEAH box helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847445|gb|ABV87944.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 448 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 187/345 (54%), Gaps = 5/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + ++L G T +QE + L KD++ S++TGSGKT+AF L L++ Sbjct: 8 LDQRLLQSLKHMGIDTPTEIQEQAIPVALAGKDLMASSKTGSGKTLAFLLPAMQRLISC- 66 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P + + PTRELA QV +L L A T +GG + + + + L H Sbjct: 67 -KALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKALSRDPH 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMF 185 VV TPGRL DH++ L+++ L+ ++LDEAD MLDLGF + ++ I ++ KRR LMF Sbjct: 126 FVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKMINAAADHKRRQTLMF 185 Query: 186 SATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHG 243 SAT+ + +A K V I + N +H DI R L D AI+ IL+ Sbjct: 186 SATLDHGDVNDIANELLKFPEHVAIGAGNLEHKDITQRIFLCDHLDHKEAILTRILKEEQ 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K I+F +TR R LA F+ +LSGEL Q R+ + G ++ + TDV Sbjct: 246 QKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQILVTTDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 A+RG+DL ++ LVI+ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 306 ASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|50084496|ref|YP_046006.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. ADP1] gi|49530472|emb|CAG68184.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ADP1] Length = 383 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/346 (33%), Positives = 196/346 (56%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKQAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121 + R+ AL +APTRELA+Q+ + L T + V +GGV ++++ L Sbjct: 69 PIQEQRYRGEVR--ALILAPTRELALQIESDARELTRFTDLNVLTLVGGVDFDKQKKPLN 126 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 + I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 EKFIDILVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +VA D+ + +IL Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYMVAKQDKYRLLQDIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L + ++V LSGE++Q +R L+ + G+ + I Sbjct: 247 RDEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKNNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + V++ L ++ +HR GRTGRAG +G+S+ Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTQGVSI 352 >gi|262190914|ref|ZP_06049130.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93] gi|297580199|ref|ZP_06942126.1| ATP-dependent RNA helicase [Vibrio cholerae RC385] gi|262033210|gb|EEY51732.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93] gi|297535845|gb|EFH74679.1| ATP-dependent RNA helicase [Vibrio cholerae RC385] Length = 422 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 189/369 (51%), Gaps = 7/369 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72 LSE G VN T +Q+ + L+ KDVL AQTG+GKT AFGL L + + R + + Sbjct: 20 TLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNS 79 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV L+ T + + GG S+ + L+ G I++ TP Sbjct: 80 KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A +D + V + N + V + + ++ + +VF Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368 LE V++ ++ E+ +HR GRTGRAG G+++ ++ + Q + E + R N + Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQLEAIERLLNTRLPQEWL 379 Query: 369 --WEPAPSV 375 +EP+P V Sbjct: 380 KGFEPSPVV 388 >gi|327264401|ref|XP_003217002.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Anolis carolinensis] Length = 820 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/376 (32%), Positives = 196/376 (52%), Gaps = 30/376 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVTNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPDKMMANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSV-FVIPQN 351 RAG+ G+++ FV ++ Sbjct: 757 RAGKSGVAISFVTKED 772 >gi|225442221|ref|XP_002277703.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 413 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 192/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D +S AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YSLVQCQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRILQTGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R N VV E PS Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYN--VVIEELPS 407 >gi|330811536|ref|YP_004355998.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379644|gb|AEA70994.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 487 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 194/348 (55%), Gaps = 9/348 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ A+ + G+ T +Q +L L KD + AQTG+GKT AF +++ + LL Sbjct: 103 FKLAPELM-HAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLL 161 Query: 64 ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + Sbjct: 162 QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 219 Query: 121 LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 220 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 279 Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ L+FSAT + + LAK + D V I +EN +++ VA +D+ + N Sbjct: 280 SERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASENVEQHIYAVAGADKYKLLYN 339 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ +G + +VF + + V R + L LSG++ Q +R L+ R+G+ RV Sbjct: 340 LVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 399 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVA RGI + + VI+ L P++ +HR GRTGRAG G+S+ Sbjct: 400 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSI 447 >gi|126698411|ref|YP_001087308.1| putative ATP-dependent RNA helicase [Clostridium difficile 630] gi|306519448|ref|ZP_07405795.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-32g58] gi|115249848|emb|CAJ67665.1| putative ATP-dependent RNA helicase [Clostridium difficile] Length = 369 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 190/355 (53%), Gaps = 14/355 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73 L + G T +Q+ + KDV+ AQTG+GKT+AF L + + L ND Sbjct: 16 LKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDIND------ 69 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L ++PTRELA+Q+ E L V + GG + + + L+ H+++ TPG Sbjct: 70 -IQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLKGNIHMIIATPG 128 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ K +++S LK VLDEAD+ML +GF++++E IL + K++ L FSATI+ + Sbjct: 129 RLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFSATINSQV 188 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA Y K+ V V+I E ++I V + +A+ +L AI+FC T Sbjct: 189 KKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFMAIIFCRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + V + LA + L +++Q +R ++ R+ + IATDVA+RG+D+ + Sbjct: 249 KRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLDISGV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367 + + +L PE+ +HR GRTGRAG +G + F+ P+N ER+ E ++ Sbjct: 309 SHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKN-----ERMLSEIETAI 358 >gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40] gi|91207780|sp|Q2UNB7|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3 gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae] Length = 472 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 114/335 (34%), Positives = 185/335 (55%), Gaps = 8/335 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T++Q + L+ +D++ A+TGSGKT AF L + L+ + F Sbjct: 65 EACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSF--- 121 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+ + E L + V V +GG+ + + L HI+V TP Sbjct: 122 ---FGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATP 178 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LD+ F ++ IL P++RR +FSAT+S Sbjct: 179 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRTYLFSATMSS 238 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + ++ +RV ++S Q S + + + +D +V +L ++ I+F Sbjct: 239 KVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIF 298 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T R + L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 299 CRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 P +++V++ +L + + +HR GRT RAG+ G+++ Sbjct: 359 PSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAI 393 >gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054] gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia cenocepacia HI2424] gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU 1054] gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia HI2424] Length = 486 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 199/373 (53%), Gaps = 11/373 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69 +A++E GY + T +Q+ + L D+L AQTG+GKT F L + T AE+ Sbjct: 14 KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHR-- 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A AL + PTRELA QV + + V GGVS++ + L+ G IVV Sbjct: 72 GAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVV 131 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ K +++S L +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT Sbjct: 132 ATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + + +A N + + V + + +++R H +V Sbjct: 192 SDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R + L + +A+ G SQ R+ AL ++ +V +ATD+AARGID Sbjct: 252 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGID 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365 + L V++ +L + PE+ +HR GRTGRAG G +V ++ + + R ERL RE Sbjct: 312 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 371 Query: 366 SVV--WEPAPSVE 376 V+ +EP P+ + Sbjct: 372 EVIAGFEPDPNAK 384 >gi|153800715|ref|ZP_01955301.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3] gi|227812335|ref|YP_002812345.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2] gi|229522328|ref|ZP_04411744.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80] gi|298499563|ref|ZP_07009369.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757] gi|124123690|gb|EAY42433.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3] gi|227011477|gb|ACP07688.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2] gi|229340313|gb|EEO05319.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80] gi|297541544|gb|EFH77595.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757] Length = 422 Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 189/369 (51%), Gaps = 7/369 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72 LSE G VN T +Q+ + L+ KDVL AQTG+GKT AFGL L + + R + + Sbjct: 20 TLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANS 79 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV L+ T + + GG S+ + L+ G I++ TP Sbjct: 80 KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A +D + V + N + V + + ++ + +VF Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368 LE V++ ++ E+ +HR GRTGRAG G+++ ++ + Q + E + R N + Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQLEAIERLLNTRLPQEWL 379 Query: 369 --WEPAPSV 375 +EP+P V Sbjct: 380 KGFEPSPVV 388 >gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group] Length = 1382 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 193/344 (56%), Gaps = 12/344 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P I + + G++N T +Q L+ +D++ A+TGSGKT+ G + + + Sbjct: 610 FPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL--GYLIPAFIHLRR 667 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 + +P P L +APTRELA Q+ E + ++ V C+ GG S + R+L+ GA Sbjct: 668 YQNNPMLGPTVLVLAPTRELASQIQDEA-VKFGRSSRVSCTCLYGGTSKGLQLRELERGA 726 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL D + + +++ + +VLDEAD MLD+GF I I+D P+ R+ LM+ Sbjct: 727 DIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMY 786 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYH 242 +AT +T +A + KD V+VNI S + S Y V+ L D+ + ILR Sbjct: 787 TATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPL-DKQRRLEQILRAQ 845 Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G+K I+FCST+ + + + F ++ G+ SQ ER N L R GRA + +A Sbjct: 846 ERGSK-VIIFCSTKKMCDQLARDIGRS-FGAASIHGDKSQAERDNVLNQFRTGRAPILVA 903 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 TDVAARG+D+ D+ +VI+ + + E+ +HR GRTGRAG G+S Sbjct: 904 TDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVS 947 >gi|254457659|ref|ZP_05071087.1| putative helicase [Campylobacterales bacterium GD 1] gi|207086451|gb|EDZ63735.1| putative helicase [Campylobacterales bacterium GD 1] Length = 423 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 181/337 (53%), Gaps = 3/337 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ E+GY T +Q+ + L KD+L AQTG+GKT F L + LL+ S Sbjct: 14 KAIKEQGYTEPTPIQKQAIPVILNRKDILAGAQTGTGKTAGFTLPMLE-LLSRAKHTSGK 72 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV +E V GGV ++ + L+ G IV+ TP Sbjct: 73 HHVKALILTPTRELAAQVAESVEVYGKHLPFKSCVIFGGVKINPQIVQLRKGIDIVIATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DHI K +++S + ++LDEAD MLD+GF +DI IL+ PK+R+ L+FSAT S Sbjct: 133 GRLLDHISQKTIDLSKVDFLILDEADRMLDMGFINDIRKILEILPKQRQNLLFSATYSDE 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFC 251 I L+ + +A N S+ +AV +R ++ L G K +VF Sbjct: 193 IKKLSDRLLNSPTLIEVARRNTA-SETVKQAVYPVDKERKRELLTHLINDGKWKQVLVFT 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L + A+ G SQ R+ AL + RV +ATD+AARGID+ Sbjct: 252 RTKHGANRLSDQLEKDGITSAAIHGNKSQNARTKALADFKKSEVRVLVATDIAARGIDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL + E+ +HR GRTGRAG +G ++ ++ Sbjct: 312 QLPHVVNYELPNVSEDYVHRIGRTGRAGNEGEAISLV 348 >gi|114644988|ref|XP_509035.2| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 2 [Pan troglodytes] Length = 820 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|113970779|ref|YP_734572.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113885463|gb|ABI39515.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 449 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 192/351 (54%), Gaps = 15/351 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAS 60 ++ Q + ++L G T++QE L L KD++ S++TGSGKT+AF L +++ Sbjct: 7 SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L++ D P L + PTRELA QV +L L A T +GG + + + + Sbjct: 67 RALSKRD-------PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L H +V TPGR+ DH+ K L ++ L+ +VLDEAD MLDLGF ++ I ++ KR Sbjct: 120 LAKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKR 179 Query: 181 RM-LMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237 R LMFSAT+ + I +A K+ V I + + +H DI R L D A++ Sbjct: 180 RQTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTR 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L K I+F +TRA R L+ F ALSGEL Q R+ + G+ ++ Sbjct: 240 LLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + TDVA+RG+DL ++ LVI+ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357] gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357] Length = 472 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 114/335 (34%), Positives = 185/335 (55%), Gaps = 8/335 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T++Q + L+ +D++ A+TGSGKT AF L + L+ + F Sbjct: 65 EACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSF--- 121 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+ + E L + V V +GG+ + + L HI+V TP Sbjct: 122 ---FGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATP 178 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LD+ F ++ IL P++RR +FSAT+S Sbjct: 179 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRTYLFSATMSS 238 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + ++ +RV ++S Q S + + + +D +V +L ++ I+F Sbjct: 239 KVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIF 298 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T R + L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 299 CRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 P +++V++ +L + + +HR GRT RAG+ G+++ Sbjct: 359 PSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAI 393 >gi|164655062|ref|XP_001728662.1| hypothetical protein MGL_4141 [Malassezia globosa CBS 7966] gi|159102545|gb|EDP41448.1| hypothetical protein MGL_4141 [Malassezia globosa CBS 7966] Length = 623 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 117/346 (33%), Positives = 186/346 (53%), Gaps = 5/346 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP I +A+ GY TS+Q + L +D++ A+TGSGKT +F + + + ++A+ Sbjct: 234 IPGAILDAIEAMGYREPTSIQRQAIPIGLIPRDLIGLAETGSGKTASFVVPMLAYVMAQP 293 Query: 67 DRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 R +P P L +APTRELA+Q+ E A+ + V +GG + + L + Sbjct: 294 -RMAPGDVYMGPYGLILAPTRELALQIEAETRKFAARLQIQVVSLVGGRDLGEQAFHLND 352 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA IV+ TPGRL D + L + +V+DEAD M+D+ + + + +ILDS P R + Sbjct: 353 GAEIVIATPGRLQDCLERHMLVLGQCHYLVMDEADRMVDMNYEEALHYILDSLPTTRTTM 412 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYH 242 ++SAT+ P + +A+ Y V V I + I+ V + DR ++++L Sbjct: 413 LYSATMPPTVDKIARTYLTRPVTVTIGQAGQAVGTIEQCVEFVDSEEDRQQRLLHVLDSG 472 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 A IVF + +A+ K L + V L LSQ +R A+ +RDG V TD Sbjct: 473 FAPPMIVFVNQKANADLVGKDLRRAGWNVAVLHSGLSQPQREAAIASLRDGYNEVLCCTD 532 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + ARGIDLPD+ LV++ + + + +HR GRTGRAG+KG ++ + Sbjct: 533 IGARGIDLPDVSLVVNYQFPTQFASYIHRIGRTGRAGKKGHAMSFV 578 >gi|261337192|ref|NP_001100263.2| probable ATP-dependent RNA helicase DDX23 [Rattus norvegicus] gi|149032134|gb|EDL87046.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (predicted), isoform CRA_b [Rattus norvegicus] Length = 819 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 396 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 455 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 456 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 515 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 516 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 575 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 576 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 635 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 636 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 695 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 696 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 755 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 756 RAGKSGVAITFL 767 >gi|90021156|ref|YP_526983.1| DNA topoisomerase III [Saccharophagus degradans 2-40] gi|89950756|gb|ABD80771.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40] Length = 398 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 193/345 (55%), Gaps = 2/345 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL++ GY T++QE + P L +DVL AQTG+GKT +F L + T + +R Sbjct: 12 ILQALNDVGYEAPTAIQEQAIPPILAGRDVLAKAQTGTGKTASFVLPILQTFKDKANR-- 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA+QV + A + +GGV + ++ L G I+V Sbjct: 70 RAKRIKALILVPTRELAIQVEDNIRLYGAHLSLTSMAMVGGVDIEPQKAKLVEGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + L+ L+ +VLDEAD MLD+GF DI I++ P++R+ L+FSAT+S Sbjct: 130 TPGRLIDLMHQRALHFDELEFLVLDEADRMLDMGFIGDINKIIERLPERRQSLLFSATLS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + LAK +AV ++IA++ + I V V ++ + +++ +G K A++F Sbjct: 190 DKVRLLAKTAIVNAVEISIAADKKSTPPITQWLVTVDKHNKSALLTHLINENGWKQALIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ L + + ++ SQ R+ L + G+ +AT +AARGID+ Sbjct: 250 IRTKHGAAKLVTQLEKRGIKAESIHSGRSQAVRTQLLADFKAGKIGFLVATGIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 DL+ V++ +L + + +HR GRTGRAG G +V +I + +R Sbjct: 310 DDLDRVVNYDLPDDAHDYVHRIGRTGRAGVSGEAVSLISMDDFKR 354 >gi|313763161|gb|EFS34525.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1] gi|313773199|gb|EFS39165.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1] gi|313793334|gb|EFS41392.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1] gi|313801023|gb|EFS42291.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2] gi|313808763|gb|EFS47217.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2] gi|313810443|gb|EFS48157.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1] gi|313816500|gb|EFS54214.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1] gi|313817944|gb|EFS55658.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2] gi|313819855|gb|EFS57569.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1] gi|313823346|gb|EFS61060.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2] gi|313824820|gb|EFS62534.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1] gi|313828335|gb|EFS66049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2] gi|313830060|gb|EFS67774.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1] gi|313832667|gb|EFS70381.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1] gi|313838024|gb|EFS75738.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1] gi|314914409|gb|EFS78240.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4] gi|314917732|gb|EFS81563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1] gi|314919541|gb|EFS83372.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3] gi|314925849|gb|EFS89680.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3] gi|314930132|gb|EFS93963.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1] gi|314957125|gb|EFT01229.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1] gi|314957731|gb|EFT01834.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1] gi|314960793|gb|EFT04894.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2] gi|314963467|gb|EFT07567.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1] gi|314969950|gb|EFT14048.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1] gi|314973091|gb|EFT17187.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1] gi|314975587|gb|EFT19682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1] gi|314979836|gb|EFT23930.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2] gi|314984871|gb|EFT28963.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1] gi|314988743|gb|EFT32834.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3] gi|315077196|gb|EFT49261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2] gi|315083323|gb|EFT55299.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2] gi|315086904|gb|EFT58880.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3] gi|315089995|gb|EFT61971.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1] gi|315096683|gb|EFT68659.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1] gi|315097910|gb|EFT69886.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2] gi|315100675|gb|EFT72651.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1] gi|315109155|gb|EFT81131.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2] gi|327325098|gb|EGE66904.1| ATP-dependent RNA helicase [Propionibacterium acnes HL096PA3] gi|327325275|gb|EGE67080.1| ATP-dependent RNA helicase [Propionibacterium acnes HL096PA2] gi|327444077|gb|EGE90731.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1] gi|327449297|gb|EGE95951.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2] gi|327449475|gb|EGE96129.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2] gi|327451498|gb|EGE98152.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3] gi|327451529|gb|EGE98183.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1] gi|327451811|gb|EGE98465.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2] gi|328752028|gb|EGF65644.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1] gi|328755440|gb|EGF69056.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2] gi|328756358|gb|EGF69974.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1] gi|328761308|gb|EGF74835.1| ATP-dependent RNA helicase [Propionibacterium acnes HL099PA1] Length = 491 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 26 GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 86 PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ A+ L + Y + V + + + + + A + ++ + I Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATD Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+ Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377 Query: 363 ANVSVV 368 A V V Sbjct: 378 AGVKPV 383 >gi|224009464|ref|XP_002293690.1| eukaryotic translation initiation factor 4A [Thalassiosira pseudonana CCMP1335] gi|220970362|gb|EED88699.1| eukaryotic translation initiation factor 4A [Thalassiosira pseudonana CCMP1335] Length = 369 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 110/341 (32%), Positives = 187/341 (54%), Gaps = 7/341 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 IP+ + + G+ +++Q+ + P + +D++ AQ+G+GKT F + TL Sbjct: 2 EIPEELLRGIYAYGFEKPSAIQQRAIKPTMLGRDLIAQAQSGTGKTATFAIG---TLAKL 58 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + + L +APTRELA Q+ + + L + V C+GG +V + R LQ G Sbjct: 59 DPKLRECQS---LILAPTRELAQQIQKVVIALGDYMELQVHACVGGTAVRDDIRTLQGGV 115 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ D I + L + ++ LDEADEML GF+D I I P+ ++ +F Sbjct: 116 HVVVGTPGRVYDMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPESVQVCLF 175 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ + + + + +D VR+ + + I + V + + + + ++ Sbjct: 176 SATMPLDVLEVTQRFMRDPVRILVKKDELTLEGIKQFYIAVEREEWKLDTLCDLYETLTI 235 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI++C+TR V + + E F V + G++ Q+ER ++ R G +RV I TD+ Sbjct: 236 TQAIIYCNTRRKVDWLQEQMQERDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLL 295 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ + LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 296 ARGIDVQQVSLVINFDLPTNRENYIHRIGRSGRFGRKGVAI 336 >gi|152983852|ref|YP_001346629.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7] gi|150959010|gb|ABR81035.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7] Length = 529 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ + LL Sbjct: 147 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 206 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ Sbjct: 207 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 264 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 265 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 324 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT + + LAK + D V I EN ++ VA SD+ + N++ Sbjct: 325 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 384 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +VF + + V R + L + +SG++ Q +R L+ R+G+ RV + Sbjct: 385 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 444 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + VI+ L +P++ +HR GRTGRAG G S+ Sbjct: 445 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 490 >gi|2500517|sp|Q40471|IF4A9_TOBAC RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9; AltName: Full=ATP-dependent RNA helicase eIF4A-9 gi|485951|emb|CAA55736.1| unnamed protein product [Nicotiana tabacum] Length = 413 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 186/355 (52%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F + L E AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE------LLDCQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L H+K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+S+ + + +R + R NV + PA Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYNVVIEELPA 407 >gi|88802866|ref|ZP_01118393.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P] gi|88781724|gb|EAR12902.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P] Length = 447 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 115/339 (33%), Positives = 186/339 (54%), Gaps = 10/339 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L++ + T +QE ++ L +K D++ A+TG+GKT AFGL L + ND Sbjct: 18 LNDLKIITPTEIQEKVIPIVLNDKEDIVALAKTGTGKTAAFGLPLLQLIDVNND------ 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A A+ +APTREL Q+ L T V +A GG+ + + L+ HI+V TP Sbjct: 72 AIQAIILAPTRELGQQIAANLISFAEHTSQVSIATLCGGIPIKPQIERLKEATHIIVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D ++ + ++I + +LDEADEM+ ++ ++ I+ PK RR +F+AT+ Sbjct: 132 GRLADLVKREAIDIKSISYFILDEADEMVT-ALKEGLDSIIKEIPKARRTFLFTATLPGT 190 Query: 193 ITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L +NY +++ H ID++ V+VA ++ +++ L + I+FC Sbjct: 191 LKQLIQNYMAPKVIQIEANMTTLGHQGIDHQYVVVAPIEKLEVLLHFLNSKAGQRGIIFC 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+A+V++ +K LA + F A+ G L+Q R + RDG + +ATD+AARGID+ Sbjct: 251 KTKAAVNKLSKNLAINKFSSGAIHGSLTQGIRDRIMGQFRDGYIDILVATDLAARGIDVK 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 DL V++ L +HRSGRT RAG G+S+ +I Q Sbjct: 311 DLSYVVNYHLPDTYGAYVHRSGRTARAGASGLSLTIIQQ 349 >gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like [Saccoglossus kowalevskii] Length = 446 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 114/355 (32%), Positives = 192/355 (54%), Gaps = 10/355 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ E + + T +Q + L KDV+ A+TGSGKT AF L + LL R Sbjct: 33 VLCETCEQLKWKEPTKIQRESIPLALEGKDVIGLAETGSGKTGAFALPILQDLLEHPQRL 92 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA Q+ + E L + G+ AV +GG+ + + L H+VV Sbjct: 93 ------FALILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAKKPHVVV 146 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG N+ +K +V+DEAD +L++ F +++ IL P++RR ++SAT Sbjct: 147 ATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKILKVIPRERRTYLYSAT 206 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + K+ V+V + ++ + + + + +D +V IL + + Sbjct: 207 MTKKVAKLQRASLKNPVKVEVNTKYQTVEKLLQYYLFIPSKYKDVYLVYILNELAGNSFM 266 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFCST + R +L V L G++SQ +R L + + IATDVA+RG+ Sbjct: 267 VFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGKDRSILIATDVASRGL 326 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 D+P +++VI+ ++ ++ ++ +HR GRT RAG+ G ++ + Q + +R E+L Sbjct: 327 DIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQYDVELYQRIEQLI 381 >gi|94498979|ref|ZP_01305517.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65] gi|94428611|gb|EAT13583.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65] Length = 457 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/332 (35%), Positives = 178/332 (53%), Gaps = 1/332 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY + T +Q + L +D+L +AQTG+GKT F L + LL Sbjct: 12 IVKAIAEQGYTSPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPILQKLLDAPKGVK 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A + L + PTRELA QV + T + V GGV ++ + + L+ G I+V Sbjct: 72 PNQARV-LVLTPTRELAAQVQDNVATYSKYTKIRSEVVFGGVKINPQMQRLRRGVDILVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ L ++LDEAD MLD+GF +DI I+ PKKR+ LMFSAT S Sbjct: 131 TPGRLLDLHNQNAIHFDQLDTLILDEADRMLDMGFINDIRKIMRLLPKKRQNLMFSATFS 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK ++ V V++ +N + + V + N ++++L +VF Sbjct: 191 DKIRALAKTIVENPVEVSVTPKNTTAKKVRQSIIAVDKKQKINLLIDLLAKEKWHQVLVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ K L++ A+ G SQ R+ AL + +V +ATD+AARGID+ Sbjct: 251 SRTKHGANKIAKQLSDADIPAAAIHGNKSQGARTRALADFKSNDIQVLVATDIAARGIDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 L VI+ +L + EN +HR GRT RAG G Sbjct: 311 DQLPHVINFDLPNVAENYVHRIGRTARAGSDG 342 >gi|224370329|ref|YP_002604493.1| predicted ATP-dependent RNA helicase [Desulfobacterium autotrophicum HRM2] gi|223693046|gb|ACN16329.1| predicted ATP-dependent RNA helicase [Desulfobacterium autotrophicum HRM2] Length = 411 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 125/388 (32%), Positives = 199/388 (51%), Gaps = 14/388 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I + + + L+ G+V T +Q + L+ +DVL AQTG+GKT AF + + + + Sbjct: 7 HISEDLKKNLAALGFVRPTDIQFKAIPSILKGEDVLAIAQTGTGKTAAFAIPVIDRIHSY 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 L + PTRELA Q+G + L T V GGV R+ + LQ+G Sbjct: 67 KTS-KRTRGIRCLVMVPTRELAEQIGGVFDTLSRHTKVKTFALYGGVEQDRQIKRLQDGI 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGR+ D I +N+ ++ +VLDEAD MLDLGF DI + K+ + L F Sbjct: 126 DILIATPGRMFDLISQGHINLDNVNTLVLDEADHMLDLGFITDIHHVKQKLVKRHQTLFF 185 Query: 186 SATISPAITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SATI+ I LA + A+R+ I+ ++ ++ + + V + D+ + N ++ + + Sbjct: 186 SATINQKIKKLAFSQVKTTAIRIQISPDDPVSKNVSHFVMFVEMDDKRFFLENFIKENPS 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVF TR R K + + + GE Q RS +Q ++ + IATDV+ Sbjct: 246 AKIIVFVRTRVRAERVAKAMERVGIETSTIHGEKDQTLRSLVMQRFKNNEISILIATDVS 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FRE 362 ARGID+P+++ VI+ +L EN +HR GRTGR +KG ++ +N + R + + F Sbjct: 306 ARGIDIPNVDFVINYDLPDQAENYVHRVGRTGRGVKKGSAISYCSRNERERLDEIQTFIN 365 Query: 363 ANVSVVW----------EPAPSVEAIRE 380 V VV EP S E +R+ Sbjct: 366 KKVEVVHVTKNDYAMVVEPEQSFEDVRD 393 >gi|167525611|ref|XP_001747140.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774435|gb|EDQ88064.1| predicted protein [Monosiga brevicollis MX1] Length = 545 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 124/358 (34%), Positives = 198/358 (55%), Gaps = 10/358 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +G+ T++Q ++ +D++ A TGSGKT+AF L + S + P Sbjct: 145 KGFDKPTAIQSCCWPIVVQGQDLVGVAATGSGKTLAFTLPALQHVKGLGR--SKTNCPRV 202 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLC 136 L ++PTRELA+Q+ + + + AVC+ GG S + L+ G +V+ TPGRL Sbjct: 203 LVLSPTRELALQINKVAQDAVKSLNQISAVCVYGGASKRDQLTALRQGCELVIATPGRLV 262 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 D + L++SH+ +VLDEAD MLD+GF DI+ IL + +R+ LMFSAT + + Sbjct: 263 DFLNDGKLDLSHVSYLVLDEADRMLDMGFERDIKLILGAVGTQRQTLMFSATWPEEVRAI 322 Query: 197 AKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNA--IVFCS 252 A NY K+ +RV + SE + ++ +V ++D ++++LR H A KNA ++F Sbjct: 323 AANYMKNPLRVTVGSEELSANRNVKQVVDVVEPMEKDRRLLDVLRKHPASKNAKVLIFAL 382 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + +R L + VV + G+L+Q +R AL+ + G + + IATDVAARG+D+ Sbjct: 383 YKKEAARLESFLQRKSYNVVGMHGDLNQGQREAALRAYKSGDSHILIATDVAARGLDVKG 442 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSV 367 + +VI+ E+ +HR GRTGRAG G++ Q+ + A L REA+V V Sbjct: 443 VAVVINYTFPLTIEDYVHRIGRTGRAGATGIAYTFFTQHDKAHAGALGNVLREADVEV 500 >gi|313109282|ref|ZP_07795250.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016] gi|310881752|gb|EFQ40346.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016] Length = 523 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ + LL Sbjct: 141 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 200 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ Sbjct: 201 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 258 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 259 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 318 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT + + LAK + D V I EN ++ VA SD+ + N++ Sbjct: 319 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 378 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +VF + + V R + L + +SG++ Q +R L+ R+G+ RV + Sbjct: 379 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 438 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + VI+ L +P++ +HR GRTGRAG G S+ Sbjct: 439 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 484 >gi|42573778|ref|NP_974985.1| ethylene-responsive DEAD box RNA helicase, putative (RH30) [Arabidopsis thaliana] gi|108861888|sp|Q8W4R3|RH30_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 30 gi|110741550|dbj|BAE98724.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|332010323|gb|AED97706.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana] Length = 591 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 199/366 (54%), Gaps = 7/366 (1%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 MK+F+ N P I EA+++ G+ T +Q L+ +D++ A+TGSGKT+A+ L Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLP 222 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 A ++ R P+ L +APTRELAVQ+ E ++GV GG + Sbjct: 223 ALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQI 282 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 RDL+ G IV+ TPGRL D + + N+ + +VLDEAD MLD+GF I I+ Sbjct: 283 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 342 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237 R+ L++SAT + TLA+ + +D + I S + + + I+ +V ++ N ++ Sbjct: 343 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 402 Query: 238 ILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +L+ G+K ++F T+ + T+ L + +A+ G+ +Q ER L + GR+ Sbjct: 403 LLKQLMDGSK-ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRS 461 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + ATDVAARG+D+ D++ V++ + + E+ +HR GRTGRAG KGM+ + + Sbjct: 462 PIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKF 521 Query: 356 AERLFR 361 A L + Sbjct: 522 ARELVK 527 >gi|2655202|gb|AAB87902.1| U5 snRNP 100 kD protein [Homo sapiens] Length = 820 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71] gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71] Length = 443 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 122/373 (32%), Positives = 200/373 (53%), Gaps = 13/373 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF--SP 71 A+ ++GY T +Q+ + L D+L AQTG+GKT F L + L +++ + Sbjct: 15 AVEKQGYDKATPIQQKAIPLVLEGSDLLAGAQTGTGKTAGFTLPMLQRL---QNKYPGTA 71 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S P AL + PTRELA QV + A AV GGVS++ +++ L G +VV T Sbjct: 72 KSYPKALVLTPTRELAAQVHESVRDYGAYLPFKSAVIFGGVSINPQKQKLIKGVDVVVAT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ + +++S ++ +VLDEAD MLD+GF DI ++ PK+R+ L+FSAT S Sbjct: 132 PGRLLDHVQQRSIDLSKIEILVLDEADRMLDMGFIHDIRRVMKVIPKQRQTLLFSATFSN 191 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + ++ ++ + +N + R V + + + + ++F Sbjct: 192 EIKKLASEFLENPQQIQVTPQNTATKLVSQRVYPVDKGRKRELLSQQIGEGNWQQVLIFT 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L++ A+ G SQ R+ AL + G R +ATD+AARGID+ Sbjct: 252 RTKHGANRLAEQLSKDGISSAAIHGNKSQGARTRALAEFKSGAIRALVATDIAARGIDID 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV 368 L V++ EL + E+ +HR GRT RAG++G ++ ++ + R E+L A + V Sbjct: 312 KLPHVVNYELPNVAEDYIHRIGRTARAGQEGHAISLVCVDELKLLRDIEKLLGSA-IEKV 370 Query: 369 WEPA----PSVEA 377 + P PS++A Sbjct: 371 YLPGFEIDPSIKA 383 >gi|302184790|ref|ZP_07261463.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. syringae 642] Length = 442 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 174/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P S Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 I-RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N + + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAAASVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|242060494|ref|XP_002451536.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor] gi|241931367|gb|EES04512.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor] Length = 410 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 192/355 (54%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 56 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 109 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 110 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 169 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 170 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 229 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 230 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 289 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 290 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 349 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV++ PA Sbjct: 350 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPA 404 >gi|161486758|ref|YP_789265.2| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14] Length = 507 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ + LL Sbjct: 125 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 184 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ Sbjct: 185 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 242 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 243 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 302 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT + + LAK + D V I EN ++ VA SD+ + N++ Sbjct: 303 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 362 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +VF + + V R + L + +SG++ Q +R L+ R+G+ RV + Sbjct: 363 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 422 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + VI+ L +P++ +HR GRTGRAG G S+ Sbjct: 423 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 468 >gi|109096393|ref|XP_001104339.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 5 [Macaca mulatta] Length = 820 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|73953311|ref|XP_851746.1| PREDICTED: similar to Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu) (DEAD-box protein 21) [Canis familiaris] Length = 784 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 132/401 (32%), Positives = 211/401 (52%), Gaps = 22/401 (5%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q KD++ A+TG+GKT +F + L Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIVK 248 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTRELA QV R+ + K + VA GG + + Sbjct: 249 LQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRK--LAVACFYGGTPYGGQIERM 306 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DH++ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 307 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 366 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 367 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 426 Query: 234 AIVNILR----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 I +++R +HG I+FC T+ ++ ++ +L G++ Q++R L+ Sbjct: 427 VIGDVIRVYSGFHG--RTIIFCETKKEAQELSQNVSIRQ-DAQSLHGDIPQKQREITLKG 483 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 R+G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 484 FRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQ 543 Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 544 HKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 584 >gi|329575935|gb|EGG57456.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis TX1467] Length = 457 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 108/277 (38%), Positives = 161/277 (58%), Gaps = 1/277 (0%) Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 L IAPTRELA+Q EL L + V GG + R+ R L++ HIVVGTPGRL Sbjct: 14 GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRLL 73 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 DHI + L + ++ +VLDEADEML++GF +DIE I+ P++R+ L+FSAT+ PAI + Sbjct: 74 DHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIKNI 133 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 + K V I ++ ID V ++ + + +L + IVF T+ Sbjct: 134 GVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRTKRR 193 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 V + L ++ + G+LSQQ+R + L+ ++G + +ATDVAARG+D+ + V Sbjct: 194 VDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHV 253 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 + ++ +PE+ +HR GRTGRAG+ GMSV FV P M Sbjct: 254 YNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 290 >gi|296387620|ref|ZP_06877095.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAb1] Length = 523 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ + LL Sbjct: 141 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 200 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ Sbjct: 201 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 258 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 259 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 318 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT + + LAK + D V I EN ++ VA SD+ + N++ Sbjct: 319 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 378 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +VF + + V R + L + +SG++ Q +R L+ R+G+ RV + Sbjct: 379 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 438 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + VI+ L +P++ +HR GRTGRAG G S+ Sbjct: 439 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 484 >gi|221133951|ref|ZP_03560256.1| ATP-dependent RNA helicase RhlB [Glaciecola sp. HTCC2999] Length = 426 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 185/341 (54%), Gaps = 5/341 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I Q I +AL+E + T +Q L P + E D+ AQTG+GKT+AF +A LL Sbjct: 16 IHQSIIDALNEANFEYCTPIQALSLPPLIDELDIAGQAQTGTGKTIAFLVATFHYLLTHK 75 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P A+ +APTRELAVQ+ + E L TG+ + + GG +R+ L NG Sbjct: 76 NS---EKGPKAMIMAPTRELAVQIYNDAELLSKHTGLTLGLIYGGEGYEDQRQTLTNGVD 132 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184 I++GT GR+ D+ + +++HL+ VLDEAD M DLGF DI ++ P +R ++ Sbjct: 133 IIIGTTGRILDYYKQGIFSLNHLQVAVLDEADRMFDLGFIKDIRYLFRRMPNATERLSML 192 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + LA + + V I E + + + + D+ ++ +L Sbjct: 193 FSATLSYRVQELAYEHMNNPTHVQIEPEKKTATRVQEELFYPSDDDKIRLLLTLLENEWP 252 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + A+VF +T+ S L +V LSG++ Q++R + ++ G+ + +ATDVA Sbjct: 253 EKAVVFANTKFSCETVAAWLMADGHRVGLLSGDVPQKKRMSIMEGFAKGKLDILVATDVA 312 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ + + V + +L + E+ +HR GRTGRAG+ G ++ Sbjct: 313 ARGLHIEKVTHVFNFDLPDDAEDYVHRIGRTGRAGKSGHAI 353 >gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138] gi|74661162|sp|Q6FNK8|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3 gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata] Length = 493 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 112/346 (32%), Positives = 194/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I +A + T +Q + P L DV+ AQTGSGKT AF + + + L + Sbjct: 81 VPELI-QACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKLWEDQ 139 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 140 QPY------YACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 193 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184 I++ TPGRL DH+ KG ++ +LK +V+DEAD +LD+ F ++ IL P K R + Sbjct: 194 IIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTTYL 253 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 254 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIG 313 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F T+A+ R + + F AL G+L+Q +R+ AL + + G+ + +ATDVA Sbjct: 314 KTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 373 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++VI+ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 374 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 419 >gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222] gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222] Length = 523 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 184/340 (54%), Gaps = 2/340 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I +A+ +GY + +QE + L KDV+ +AQTG+GKT F L + +L++ R Sbjct: 10 EPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE-MLSKGPR 68 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL + PTRELA QV + + V GGV ++ + + L+ G+ ++ Sbjct: 69 VRQNQV-RALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSDVL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + L+ +VLDEAD MLD+GF DI IL PKKR+ L+FSAT Sbjct: 128 VATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I +LAK + V ++++ N ++ V + + +++ + + + Sbjct: 188 FSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKDNDWRQVL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ + L E + G SQ R+ AL+ + G+ RV +ATD+AARGI Sbjct: 248 VFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+P L V++ +L + E+ +HR GRTGRAG G ++ ++ Sbjct: 308 DIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347 >gi|254572992|ref|XP_002493605.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family [Pichia pastoris GS115] gi|238033404|emb|CAY71426.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family [Pichia pastoris GS115] gi|328354565|emb|CCA40962.1| ATP-dependent RNA helicase DDX5/DBP2 [Pichia pastoris CBS 7435] Length = 537 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 192/366 (52%), Gaps = 10/366 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P + A+ +G+ + T++Q L KD++ A TGSGKT+++ L + A+ Sbjct: 107 FPDYVLTAVKAQGFPSPTAIQCQGWPMALGGKDMVGIAATGSGKTLSYCLPAIVHINAQ- 165 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 P P+AL +APTRELAVQ+ +E + + + GGV ++ RDL GA Sbjct: 166 PLLKPGDGPVALVLAPTRELAVQIQKECSKFGSSSRIRNTCVYGGVPKGQQIRDLARGAE 225 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ TPGRL D + N+ + +VLDEAD MLD+GF I I+D R+ LM+S Sbjct: 226 IVIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 285 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-----DRDNAIVNILRY 241 AT ++ LA++Y D ++VN+ S S + + V+ LS DR + Sbjct: 286 ATWPKSVQALARDYLHDYIQVNVGSLELAASH-NIKQVIEVLSEYEKRDRLTKYLEQASE 344 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 +VF ST+ + T L + +A+ G+ Q+ER LQ R G++ + +AT Sbjct: 345 DKTSKILVFASTKRTCDELTTYLRSDGWPALAIHGDKEQRERDWVLQEFRSGKSPIMVAT 404 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359 DVAARGID+ + V++ ++ N E+ +HR GRTGRAG G +V R A+ L Sbjct: 405 DVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAVSFFTNANARMADDLVP 464 Query: 360 -FREAN 364 +EAN Sbjct: 465 ILKEAN 470 >gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN] gi|221229833|ref|YP_002503249.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923] gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae] gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923] Length = 544 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 134/358 (37%), Positives = 189/358 (52%), Gaps = 9/358 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+ERG ++QE L L DV+ A+TG GKT AFG+ L + Sbjct: 43 IVRALAERGIQQPFAIQELTLPLALAGDDVIGQARTGMGKTFAFGVPLLQRISVTTTARP 102 Query: 71 PASAPLALAIAPTRELAVQVGREL----EWLYAKTG---VVVAVCIGGVSVHRERRDLQN 123 + AP L + PTREL +QV +L ++L A V GG + + LQ Sbjct: 103 LSGAPRGLVVVPTRELCLQVADDLATVAKYLTADDDNRRFSVVSIYGGRAYEPQIEALQT 162 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA +VV TPGRL D + L +S L +VLDEADEMLDLGF DIE +L P R+ + Sbjct: 163 GADVVVSTPGRLLDLCQQGHLQLSGLSVLVLDEADEMLDLGFFPDIERLLGQIPTDRQSM 222 Query: 184 MFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALS-DRDNAIVNILRY 241 +FSAT+ I TLA+ + + + A + D + V A + D+ I IL+ Sbjct: 223 LFSATMPDPIITLARTFMDQPIHIRAEAPHSLAVHDTTQQFVYRAHALDKVELISRILQA 282 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G ++F T+ + + T L E F V A+ G+L Q R NAL+ R G V +AT Sbjct: 283 RGRGATMIFTRTKRTAQKVTNELNERGFAVGAVHGDLGQIARENALEAFRTGNVDVLVAT 342 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 DVAARGID+ D+ VI+ + + + +HR GRTGRAGR G++V ++ + R E + Sbjct: 343 DVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELHRWETI 400 >gi|315182662|gb|ADT89575.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218] Length = 406 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 125/370 (33%), Positives = 190/370 (51%), Gaps = 7/370 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E LS G T +Q + L KDVL AQTG+GKT AFGL L + + P Sbjct: 3 ERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRFVDHPLQREPN 62 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 S + AL + PTRELA QV L+ + + + GG S++ ++++L+ GA I++ T Sbjct: 63 SKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNLRGGADILIAT 122 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH K L + + +A+VLDEAD MLD+GF DI+ +L +R+ L FSAT Sbjct: 123 PGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHERQTLFFSATFDS 182 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I A ++ V V + N ++ V + + ++ + +VF Sbjct: 183 KIKAFAHRMMQNPVEVQVTPSNSTADTVEQMVYPVDKKRKRELLAYLIGSRNWQQVLVFT 242 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + L + +++G+ SQ R AL + G+ R IATDVAARGID+ Sbjct: 243 RTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGIDIA 302 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANVSVVW 369 LE V++ ++ E+ +HR GRTGRAG+ G +V ++ + Q E + R + + W Sbjct: 303 QLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLLEAIERLLDKRLPQEW 362 Query: 370 ----EPAPSV 375 EP+P V Sbjct: 363 LKGYEPSPVV 372 >gi|292493687|ref|YP_003529126.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4] gi|291582282|gb|ADE16739.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus Nc4] Length = 423 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 188/342 (54%), Gaps = 3/342 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + + + G+ T +Q L L KDV AQTG+GKT AF LA LL + Sbjct: 15 NLAKPLIQGIQDAGFTVCTPIQALTLPLLLAGKDVAGQAQTGTGKTAAFLLATMQYLLRD 74 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AL +APTRELA+Q+ ++ + L TG+ V GG + ++R L+ G Sbjct: 75 LG-IEQGQQPRALILAPTRELAIQIKKDAQLLGRHTGLRSVVVYGGANYRKQRHLLEQGC 133 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 I++GTPGRL D+ + + + ++ VVLDEAD M DLGF DI +IL P KR + Sbjct: 134 DILIGTPGRLIDYYKQQIFDFKKVQVVVLDEADRMFDLGFIRDIRYILRRLPPPHKRLGM 193 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S +T LA + + V S+ I R A ++ ++ +L+ Sbjct: 194 LFSATLSLRVTELAYEHMNNPRLVQTESQKVTADKIKERVYFPANEEKIPLLLALLKRLA 253 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++AIVF +T+ + + L + F+ LSG++ Q +R L+ ++G + +ATDV Sbjct: 254 PQHAIVFVNTKYAAEQVWGYLEGNGFKAALLSGDVPQGKRQRLLKEFQEGSYPILVATDV 313 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L +PE+ +HR GRT RAG G +V Sbjct: 314 AARGLHIPTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAV 355 >gi|170578019|ref|XP_001894230.1| eukaryotic initiation factor 4A [Brugia malayi] gi|158599270|gb|EDP36940.1| eukaryotic initiation factor 4A, putative [Brugia malayi] Length = 413 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 112/336 (33%), Positives = 184/336 (54%), Gaps = 9/336 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P +++DV+ AQ+G+GKT F +A+ + D P AL Sbjct: 63 GFEKPSAIQQRAIIPCTKKRDVIAQAQSGTGKTATFSVAVLQNI----DETIPEVQ--AL 116 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV IGG +V ++R L++G H+VVGTPGR+ D Sbjct: 117 VMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLESGVHVVVGTPGRVNDM 176 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I + L +++K VLDEADEML GF++ I + P ++++ SAT+ + + Sbjct: 177 ITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPSDVQVVLLSATMPSEVLEVTN 236 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + D +R+ + E I R + + + ++ A++FC+TR V Sbjct: 237 RFMNDPIRILVKREELTLEGI--RQFYIN-EWKFETLCDLYSTVNVTQAVIFCNTRRKVD 293 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 +++ + V + GE+ Q ER ++ R G +RV I TD+ ARGID+ + LVI+ Sbjct: 294 YLAAQMSKEKYTVSCMHGEMEQNERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 +L SN EN +HR GR+GR GRKG+++ I + R Sbjct: 354 YDLPSNRENYIHRIGRSGRFGRKGVAINFITETDMR 389 >gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus SK60] gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus SK60] Length = 777 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 201/369 (54%), Gaps = 22/369 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAP- 75 GY T +Q + L +D+L+SAQTGSGKT AF L + L L ++ + +A Sbjct: 88 GYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQLSELQAKEKAAEKTASG 147 Query: 76 ----------LALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 AL + PTRELA QV + ++ A + +GG + + R L+ G Sbjct: 148 KRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVPLVGGAAYSGQIRALKKG 207 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I+V TPGRL DHI + +N+S L +VLDEAD MLD+GF DDI IL+++P R+ +M Sbjct: 208 VQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFADDINAILEATPAHRQTIM 267 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT + +A+++ KD R+NI E + ID + D N ++ L Sbjct: 268 SSATWDGPVGKIAESFTKDPERINIKVET---AHIDEKVYFCDNFDHKNKLLEQLICDPE 324 Query: 245 K-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AI+F +T+ S + L + + L G+L Q +R+ + +R G+ + +ATDV Sbjct: 325 RGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRSGKFDIVVATDV 384 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR----AERL 359 AARG+DLP++ V + +L E+ +HR GR+GRAGR G+++ + ++ +R+ A L Sbjct: 385 AARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIAINLCSRDDRRQFGNIARYL 444 Query: 360 FREANVSVV 368 R+ N + V Sbjct: 445 KRDINEAQV 453 >gi|143361556|sp|Q5QMN3|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20 Length = 494 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 185/341 (54%), Gaps = 3/341 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 P+ + + +++ G+V T +Q LR +D++ A+TGSGKT+A+ L A + Sbjct: 97 GFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAY-LLPAIVHVNA 155 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P P+ L +APTRELAVQ+ +E A + + GGV + RDLQ G Sbjct: 156 QPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGV 215 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL D I N+ + +VLDEAD MLD+GF I+ I+ R+ L + Sbjct: 216 EIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYW 275 Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR-YHG 243 SAT + LA+N+ D +V I SE + + I +++ S + N +VN+L Sbjct: 276 SATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMD 335 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F T+ + T+ L + +++ G+ SQ ER L + G++ + ATDV Sbjct: 336 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDV 395 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 AARG+D+ D++ VI+ + + E+ +HR GRTGRAG KG + Sbjct: 396 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 436 >gi|73996608|ref|XP_851051.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 2 [Canis familiaris] Length = 820 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|291389065|ref|XP_002711079.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Oryctolagus cuniculus] Length = 820 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|39936732|ref|NP_949008.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009] gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009] gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris TIE-1] Length = 474 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 177/336 (52%), Gaps = 3/336 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL E Y T +Q + L +DV+ AQTG+GKT +F L + LL +R Sbjct: 20 IARALQEENYHTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHRLL--QNRIK 77 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 PAS L ++PTREL+ Q+ + A+ IGGV + R+ R L G ++V Sbjct: 78 PASKTCRVLVLSPTRELSGQILDSFNAYGRHVHLSAALAIGGVPMGRQVRSLMGGVDVLV 137 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D ++G L ++ ++ +VLDEAD MLD+GF +DI I+ P KR+ L FSAT+ Sbjct: 138 ATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATM 197 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LA+ +D RV + + I+ R + + S + A+ IL+ A+V Sbjct: 198 PKDIADLAEQMLRDPARVAVTPVSSTVERINQRVIQLDHSAKPAALAQILKDDKVNQALV 257 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + K LA A+ G SQ R L R G R +ATD+AARGID Sbjct: 258 FTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTLVATDIAARGID 317 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + + V++ +L + PE +HR GRT RAG G ++ Sbjct: 318 VDGVSHVVNFDLPNIPETYVHRIGRTARAGADGTAI 353 >gi|116750069|ref|YP_846756.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699133|gb|ABK18321.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans MPOB] Length = 533 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 120/359 (33%), Positives = 190/359 (52%), Gaps = 18/359 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 ++P I +++ + T +Q A+L L D AQTG+GKT F + + + L Sbjct: 122 DLPAPILRGIADAEFRYCTPIQAALLPHTLNGLDAAGRAQTGTGKTAVFIITMLTQFLRN 181 Query: 64 --AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 E R P AL +APTRELA+Q+ +E L T GG+ +++R L Sbjct: 182 PAPEGRR---KGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFGGMDYEKQKRRL 238 Query: 122 QNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179 IVV TPGRL D R L++S ++ +V+DEAD MLD+GF D++ I+ +P K Sbjct: 239 TGEVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLDMGFIPDVQRIIHYTPPKA 298 Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ ++FSAT++ +T A + ++ V V I E ++ R ++ + ++ + N+ Sbjct: 299 QRQTMLFSATLTAEVTRFASQWTRNPVTVEIEPEQVAVDTVNQRVLITTIDEKFTLLFNM 358 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + IVF + R R T+ L + LSGE+ Q++R L+ R+G+ RV Sbjct: 359 ITRQNLDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNGKIRVL 418 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIP 349 +ATDVAARG+ + + V + + +PE+ +HR GRTGRAG G+SV F+IP Sbjct: 419 VATDVAARGLHVEAVSHVFNYNMPMDPEDYVHRIGRTGRAGTSGISVSFASEDDSFLIP 477 >gi|318079420|ref|ZP_07986752.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actF] Length = 461 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 173/315 (54%), Gaps = 10/315 (3%) Query: 44 AQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVGRELEW 96 A+TG+GKT+ FGL L + D R +P + AP AL + PTREL QV +L+ Sbjct: 5 AKTGTGKTLGFGLPLLERVTVSADVEAGRATPDKLSEAPQALVVVPTRELCTQVTNDLQT 64 Query: 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156 V V GG + + L+ G +VVGTPGRL D + L++S ++A+VLDE Sbjct: 65 AGKVRDVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRALVLDE 124 Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS---EN 213 ADEMLDLGF D+E I+ P KR+ ++FSAT+ A+ LA+ Y +N S EN Sbjct: 125 ADEMLDLGFLPDVEKIVAMLPVKRQTMLFSATMPGAVVALARRYMSQPTHINATSPDDEN 184 Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273 ++ + D+ + IL+ G ++FC T+ + + ++ L F A Sbjct: 185 ATVANTEQHVFRAHSMDKPEMVARILQAEGRGLVMIFCRTKRTAADISEQLQRRGFAAGA 244 Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333 + G+L Q R AL+ R+G+ V + TDVAARGID+ + VI+ + + + LHR G Sbjct: 245 VHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIG 304 Query: 334 RTGRAGRKGMSVFVI 348 RTGRAGR G +V ++ Sbjct: 305 RTGRAGRSGTAVTLV 319 >gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus 307] gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus 307] Length = 435 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 116/346 (33%), Positives = 193/346 (55%), Gaps = 3/346 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I E L +G ++ T +Q + + +DV+ A+TGSGKT AFGL + LL E Sbjct: 10 PRLIAE-LKSQGIIDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLLKEQG 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + +A AL +APTRELA Q+ L T + + +GG + + R L+ G + Sbjct: 69 KPEGKTA-RALILAPTRELAKQIQENLAAYTQGTHLKTMLVVGGAGITGQIRKLERGVDL 127 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + + + + K +VLDEAD+MLD+GF + I +R+ ++FSA Sbjct: 128 LVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTMLFSA 187 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ + LA + K+ +RV + + + I+ VA + + + ++ ++ H + A Sbjct: 188 TMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELIDKHRDERA 247 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF T+ + K+LA F ++ G SQ +R A+ + G+ ++ +ATDVAARG Sbjct: 248 IVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVKILVATDVAARG 307 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 +D+P+++ + + +L + EN +HR GRT RAG GM++ F P M Sbjct: 308 LDIPEVKHIYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEM 353 >gi|126728206|ref|ZP_01744022.1| putative ATP-dependent RNA helicase protein [Sagittula stellata E-37] gi|126711171|gb|EBA10221.1| putative ATP-dependent RNA helicase protein [Sagittula stellata E-37] Length = 425 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 116/339 (34%), Positives = 182/339 (53%), Gaps = 1/339 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L++ + T +Q + L +DV+ AQTG+GKT AFGL + +T++ + Sbjct: 4 LPPRLLTNLADLNITDPTPIQSQAIPHALNGRDVMGLAQTGTGKTAAFGLPIVTTIMRDQ 63 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R P L +APTRELA Q+ L A T V + + GG S++ + L G Sbjct: 64 TRPGPKQV-HGLILAPTRELAKQIVDNLRAYAANTPVKIGLVTGGNSINGQINRLAKGTD 122 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL D + K + + + +VLDEAD+MLDLGF + I PK+R+ ++FS Sbjct: 123 LLVATPGRLIDLMEQKAVRLDATRFLVLDEADQMLDLGFIHALRQIARVLPKERQTMLFS 182 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + +A Y D VR+ + + I+ V + +V+ L H + Sbjct: 183 ATMPKQMAEIASAYLTDPVRIEVTPPGKPVERIEQSVHFVEQKAKTPLLVHHLDLHRTEA 242 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 A+VF T+ + + L + F ++ G SQ +R AL+ R+G V +ATDVAAR Sbjct: 243 ALVFARTKHGAEKLKRHLEDKGFAAGSIHGNKSQGQRDRALKAFREGELTVLVATDVAAR 302 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 GID+P + V + +L + +N +HR GRT RAGR G ++ Sbjct: 303 GIDIPSVRYVYNYDLPNVADNYVHRIGRTARAGRDGTAI 341 >gi|39940710|ref|XP_359892.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15] gi|152032454|sp|A4QU31|FAL1_MAGO7 RecName: Full=ATP-dependent RNA helicase FAL1 gi|145010887|gb|EDJ95543.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15] Length = 401 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 114/339 (33%), Positives = 187/339 (55%), Gaps = 12/339 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 46 GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 99 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 100 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 159 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 160 IRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 219 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255 + D VR+ + + + + +A+ D + + ++ A++FC+TR Sbjct: 220 KFMTDPVRILVKRDELTLEGL--KQYFIAIEKEDWKFDTLCDLYDTLTITQAVIFCNTRR 277 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 V T + E F V ++ G++ Q+ER + +Q R G +RV I+TDV ARGID+ + L Sbjct: 278 KVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL 337 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 VI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 338 VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 376 >gi|109898646|ref|YP_661901.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c] gi|109700927|gb|ABG40847.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica T6c] Length = 426 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 125/362 (34%), Positives = 196/362 (54%), Gaps = 17/362 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ GY +T +Q+ + R +DVL SAQTG+GKT AF + + +L + + + Sbjct: 12 LQQAIDACGYKKMTPIQQQAIVVARRGRDVLASAQTGTGKTAAFAVPILQQMLNKPKKTT 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P + P AL + PTRELA Q+ + YAK T + V GGV + + L G IV+ Sbjct: 72 PGT-PRALILTPTRELAEQLATNIAN-YAKFTDISVTALYGGVKLGGQASKLSAGVDIVI 129 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL +H+ K + +++++ VVLDEAD MLD+GF D+ +L + L+FSATI Sbjct: 130 STPGRLLEHMTLKNVELANVEFVVLDEADRMLDMGFIADVRQMLAQITSAHQTLLFSATI 189 Query: 190 SPAITTLA----KNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYH 242 SP + LA KN+Q+ A ++N A++ QH V+ +S+ D +L Sbjct: 190 SPTVNELAHKLLKNHQEIRATQLNSAADTVQH-------VMYPVSEEDKIRLFKTLLAEQ 242 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +VF ST+ + L + SQ R A+ + + +V IAT+ Sbjct: 243 NWYQVLVFTSTKEQADKLMAALKTSKIDAAVCHADKSQGARRRAIADFKSAKLQVLIATE 302 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ L+ V++ L PE+ +HR GRTGRAG++G ++ + + +R ER+ R Sbjct: 303 VAARGLDIQGLDYVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVERIERL 362 Query: 363 AN 364 N Sbjct: 363 IN 364 >gi|153009469|ref|YP_001370684.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561357|gb|ABS14855.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC 49188] Length = 464 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 115/327 (35%), Positives = 179/327 (54%), Gaps = 1/327 (0%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 34 GMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 92 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 93 ILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 152 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ R+ +FSAT+ I +LA Sbjct: 153 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSDRQTALFSATMPKEIASLAG 212 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + D VRV +A + ++I V ++ + +L ++ IVF T+ Sbjct: 213 SLLHDPVRVEVAPQGTTAAEITQVVHPVHTKEKRRLLSALLGDKAMRSVIVFTRTKHGAD 272 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L ++V A+ G SQ R AL RDG R+ IATD+AARGID+P + V++ Sbjct: 273 AVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILIATDIAARGIDVPGISHVVN 332 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345 +L PE +HR GRTGR G G S+ Sbjct: 333 YDLPDEPETYVHRIGRTGRNGASGASI 359 >gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC 19414] Length = 475 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 112/339 (33%), Positives = 183/339 (53%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I +AL+E+GY T +QE + L+ D++ AQTG+GKT AF + L + Sbjct: 8 INEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTLQNLKEKA 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + AL + PTRELA+Q+ E + V GGV+ + + L+NG Sbjct: 68 FDRNGKRKIRALVLTPTRELAIQIQENFEMYGKYMDLRSTVVFGGVAQRYQVKALRNGVD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++ TPGRL D + +++S ++ +LDEAD MLD+GF +D++ I+ PKK++ L+FS Sbjct: 128 TLIATPGRLEDLMSQGYIDLSQIEIFILDEADRMLDMGFINDVKRIIKKLPKKKQTLLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I+++A+ + V + + ++ V ++ ++++L + Sbjct: 188 ATMPSEISSIAEMLLNNPTTVAVTPVSSTVETVEQSVYYVDQRNKTQLLIDVLENKSFDS 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ R + L VA+ G+ SQ R AL +DG V +ATD+AAR Sbjct: 248 VLVFTRTKRGADRVARDLCRSNINAVAIHGDKSQGARQRALSGFKDGTINVMVATDIAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 GID+ +L+ V++ EL PE +HR GRTGRAG G ++ Sbjct: 308 GIDINELKYVVNYELPEVPETYVHRIGRTGRAGFSGAAI 346 >gi|41327771|ref|NP_004809.2| probable ATP-dependent RNA helicase DDX23 [Homo sapiens] gi|160385708|sp|Q9BUQ8|DDX23_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName: Full=100 kDa U5 snRNP-specific protein; AltName: Full=DEAD box protein 23; AltName: Full=PRP28 homolog; AltName: Full=U5-100kD gi|12803125|gb|AAH02366.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapiens] gi|119578415|gb|EAW58011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo sapiens] gi|119578419|gb|EAW58015.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo sapiens] gi|123981044|gb|ABM82351.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct] gi|123995847|gb|ABM85525.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct] gi|189065458|dbj|BAG35297.1| unnamed protein product [Homo sapiens] Length = 820 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|82523756|emb|CAI78756.1| probable ATP-dependent RNA helicase [uncultured gamma proteobacterium] Length = 505 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 114/327 (34%), Positives = 191/327 (58%), Gaps = 10/327 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA---SAPLALAI 80 T VQ+ + L +D+LVSA+TGSGKT+A+ + LA +LA +PA AL + Sbjct: 82 TEVQKLAVPAALAGRDLLVSAETGSGKTLAYLIPLAQKILA-----APAGTTQGTQALIL 136 Query: 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 PTRELA QV + + L AK+ + GG ++ L+ I+VGTPGRL +H R Sbjct: 137 VPTRELARQVLKHIRQLLAKSPLKAQAITGGADFKYQKSQLRQDPEIIVGTPGRLLEHCR 196 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP-AITTLAKN 199 ++ L+ +VLDEAD MLD+GFR+D+ I D P R+ML+ SAT+S + +A Sbjct: 197 KLSTDLGRLQTLVLDEADRMLDMGFREDVLAIADFCPASRQMLLLSATLSHRGVGDIAAT 256 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + + + + + HS+I ++ +L + +D ++ +L+ + +VF + R + + Sbjct: 257 LRLNPQSIAVGQVRQPHSNISHQLILADNQTHKDQLLLALLQQGDYQRVLVFGNKRDTAA 316 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 R ++ + L GEL+ +ER + ++G+ + A+DVAARG+D+ ++LVI+ Sbjct: 317 RLHQLTQGQRLRSACLHGELTTEERKQVMHRFQEGKVNIVCASDVAARGLDIQGIDLVIN 376 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345 ++ + +N LHR+GRTGRAG+KG+++ Sbjct: 377 YDIPYSGDNYLHRTGRTGRAGQKGLAI 403 >gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32] Length = 523 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 184/340 (54%), Gaps = 2/340 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I +A+ +GY + +QE + L KDV+ +AQTG+GKT F L + +L++ R Sbjct: 10 EPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE-MLSKGPR 68 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL + PTRELA QV + + V GGV ++ + + L+ G+ ++ Sbjct: 69 VRQNQV-RALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSDVL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + L+ +VLDEAD MLD+GF DI IL PKKR+ L+FSAT Sbjct: 128 VATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I +LAK + V ++++ N ++ V + + +++ + + + Sbjct: 188 FSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKDNDWRQVL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ + L E + G SQ R+ AL+ + G+ RV +ATD+AARGI Sbjct: 248 VFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+P L V++ +L + E+ +HR GRTGRAG G ++ ++ Sbjct: 308 DIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347 >gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 460 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 191/364 (52%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T++Q+ + L + D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTAIQQQAIPLVLADHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|212712156|ref|ZP_03320284.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM 30120] gi|212685203|gb|EEB44731.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM 30120] Length = 477 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 198/370 (53%), Gaps = 7/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY + T +Q+ + L KD+L SAQTG+GKT F L + L+ +N R + Sbjct: 44 AINELGYESPTPIQQQAIPAVLAGKDLLASAQTGTGKTAGFTLPILQKLV-DNPRGNNRR 102 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV ++ + V GGVS++ + L+ G +++ TPG Sbjct: 103 PIRALILTPTRELAAQVAENVKEYSRHLKIRSFVVFGGVSINPQMMKLRGGVDVLIATPG 162 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D +++S ++ VLDEAD MLD+GF DI ++ PKKR+ L+FSAT S I Sbjct: 163 RLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVITKLPKKRQNLLFSATFSDEI 222 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V + +A N + LV + + + ++ + +VF T Sbjct: 223 KQLASKLLNNPVSIEVAPRNSASEQVTQYVHLVDKNRKAELLSFMIGRENWQQVLVFTRT 282 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ L Sbjct: 283 KHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEQL 342 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368 V++ EL + E+ +HR GRTGRA GM+V ++ + + E+L +++ + Sbjct: 343 PYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLKDIEKLLKKSIPLMAIE 402 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 403 GYEPNPSIKA 412 >gi|207742162|ref|YP_002258554.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] gi|206593550|emb|CAQ60477.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609] Length = 471 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 191/339 (56%), Gaps = 9/339 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A Sbjct: 23 PAVLAN-LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAQLDAR-- 79 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF A+ + PTRELA QV +E+ L A+ V V GG + + L++GAH Sbjct: 80 RFDVQ----AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAH 135 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L + LK +VLDEAD MLD+GF DDI ++ P +R+ L+FS Sbjct: 136 VVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLFS 195 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I L++ ++ V + E S I R V R +A+ +L+++ + Sbjct: 196 ATYPDGIAKLSRQILRNPKEVKL-EERHDDSKIRQRFYEVTDDKRLHAVGLLLKHYRPVS 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 + FC+T+ VL F +AL GEL Q+ER L + V +ATDVAAR Sbjct: 255 TLAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAAR 314 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+D+ LE VI+ +++ +PE +HR GRTGRA + G ++ Sbjct: 315 GLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWAL 353 >gi|296211536|ref|XP_002752462.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Callithrix jacchus] Length = 820 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|253681398|ref|ZP_04862195.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873] gi|253561110|gb|EES90562.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873] Length = 370 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 116/343 (33%), Positives = 187/343 (54%), Gaps = 13/343 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L +G T +QE ++ DV+ AQTG+GKT AF LL + SP Sbjct: 14 KVLKSQGITVPTPIQEKSMDLIKNGNDVIAEAQTGTGKTFAF-------LLPMFENMSPN 66 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + L + PTRELA+Q+ E L + + GG + + + L+ H+++ T Sbjct: 67 INKIQGLIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLKGNIHLIIAT 126 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DHI+ +NI LK +VLDEAD+ML +GF++++E I+ KK ++L FSAT++ Sbjct: 127 PGRLLDHIKRNTINIEKLKTIVLDEADQMLYMGFKNEVEEIMKHISKKTQILCFSATMNS 186 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249 + LA Y K+ V+I +E +I + +V +DR +A+ +L A AI+ Sbjct: 187 QVKKLAYRYMKEPNVVSIQNEEVTLKNI--KQAVVETTDRRKQDALCKVLDEDNAFMAII 244 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ V L + + + G+L+Q +R ++ ++ + IATDVAARG+D Sbjct: 245 FCRTKRRVDNLEAALHQRGYNCKKIHGDLTQSKRERVMKEFKNMDIQYLIATDVAARGLD 304 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351 + + V ++ N E+ +HR GRTGRAG KG + +F+ P++ Sbjct: 305 ISGVTHVYSYDIPENTESYIHRIGRTGRAGEKGETCLFIDPKD 347 >gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472] Length = 472 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 198/374 (52%), Gaps = 16/374 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L+ D+L +AQTG+GKT F L L L+ A Sbjct: 18 AVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTLPLLQLLMCSPSHH--AG 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV + + V GGV+++ + + L+ I+V TPG Sbjct: 76 RPRALVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNINPQIKALRAPVDILVATPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ K +++S ++ +VLDEAD MLD+GF DI+ +L P +R+ L+FSAT S I Sbjct: 136 RLLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLAKLPAQRQNLLFSATFSDEI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V +A N + + + LV + +++++R +VF T Sbjct: 196 KALADKLLDNPKLVEVARRNTTNELVSQKVHLVDRDKKTELLIHLIREQNWFQVLVFTRT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + A+ G SQ R+ AL + G +V +ATD+AARG+D+ L Sbjct: 256 KHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKSGELQVLVATDIAARGLDIDQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQ-NMQRRAERLFR--------- 361 V++ EL + PE+ +HR GRTGRAG G +S+ + + + R E+L + Sbjct: 316 PHVVNFELPNVPEDYVHRIGRTGRAGSPGEALSLVCVDEFSFLRDIEKLIKMSIERFTVP 375 Query: 362 --EANVSVVWEPAP 373 EA+++V EP P Sbjct: 376 GFEADLNVKPEPIP 389 >gi|83748492|ref|ZP_00945513.1| Hypothetical Protein RRSL_01624 [Ralstonia solanacearum UW551] gi|83724796|gb|EAP71953.1| Hypothetical Protein RRSL_01624 [Ralstonia solanacearum UW551] Length = 499 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 191/339 (56%), Gaps = 9/339 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A Sbjct: 51 PAVLAN-LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAQLDAR-- 107 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 RF A+ + PTRELA QV +E+ L A+ V V GG + + L++GAH Sbjct: 108 RFDVQ----AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAH 163 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VVGTPGR+ DH+ L + LK +VLDEAD MLD+GF DDI ++ P +R+ L+FS Sbjct: 164 VVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLFS 223 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I L++ ++ V + E S I R V R +A+ +L+++ + Sbjct: 224 ATYPDGIAKLSRQILRNPKEVKL-EERHDDSKIRQRFYEVTDDKRLHAVGLLLKHYRPVS 282 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 + FC+T+ VL F +AL GEL Q+ER L + V +ATDVAAR Sbjct: 283 TLAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAAR 342 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+D+ LE VI+ +++ +PE +HR GRTGRA + G ++ Sbjct: 343 GLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWAL 381 >gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279] gi|210160006|gb|EEA90977.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279] Length = 595 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 185/345 (53%), Gaps = 7/345 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+++ GY + T VQ A + L +DVL +AQTG+GKT AF L + L R Sbjct: 53 AVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGTGKTAAFLLPTMNNLPHVPRGRARGR 112 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + A PL L + PTRELA Q+ + TG +GGVS + +R L+ G I+ Sbjct: 113 VA-AQGPLMLVVTPTRELAQQIEDVCRAIAKCTGHTSVTVVGGVSYNPQRDKLKRGCDIL 171 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D I ++ ++ +VLDEAD MLD+GF + I+ + R+ L+FSAT Sbjct: 172 IATPGRLQDLIDQGACSLDQVQVLVLDEADRMLDMGFLPAVRRIVGYTRDDRQTLLFSAT 231 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + D RV IA ++ + V+L ++ + ++L+ GA AI Sbjct: 232 LDEQAVGSITDLVHDPARVEIAPVTSTADTVEQYVLPVSLEAKNALLASVLKREGASRAI 291 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC T+ ++ LA A+ G+ SQ +R AL+ R G V +ATDV ARGI Sbjct: 292 VFCRTKHRADACSRRLARAGITCAAIHGDRSQAQRERALKAFRAGECDVLVATDVLARGI 351 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 D+ D+ V++ ++ +P + +HR GRTGRAG G S+ FV P ++ Sbjct: 352 DISDVRYVVNFDVPEDPVDYIHRIGRTGRAGELGWSLTFVTPDDV 396 >gi|107103380|ref|ZP_01367298.1| hypothetical protein PaerPA_01004450 [Pseudomonas aeruginosa PACS2] Length = 523 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ + LL Sbjct: 141 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 200 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ Sbjct: 201 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 258 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 259 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 318 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT + + LAK + D V I EN ++ VA SD+ + N++ Sbjct: 319 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 378 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +VF + + V R + L + +SG++ Q +R L+ R+G+ RV + Sbjct: 379 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 438 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + VI+ L +P++ +HR GRTGRAG G S+ Sbjct: 439 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 484 >gi|120403427|ref|YP_953256.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956245|gb|ABM13250.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii PYR-1] Length = 443 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 186/362 (51%), Gaps = 4/362 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + ++LS+RG +Q A L L +DVL +TGSGKT+AF + L + L Sbjct: 10 GVPAPLVQSLSQRGITEPFPIQAATLPDALAGRDVLGRGKTGSGKTLAFSIPLVTAL--- 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R S S P L +APTRELA Q+ L+ L A G+ + GGVS R+ L+ G Sbjct: 67 TGRRSQPSRPSGLVLAPTRELATQITATLQPLAAANGLRITTIFGGVSQSRQVAALRAGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL D + K +++ + VLDEAD M DLGF + IL ++P+ + L+F Sbjct: 127 DIVVACPGRLEDLMGQKLISLQDVTTTVLDEADHMADLGFLPGVTRILAATPRGGQRLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + + D V ++ + + + V +V+ L G Sbjct: 187 SATLDNGVDKLVQRFLNDPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKDLVHRL-ASGTG 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + K L + V L G LSQ R L G ARV +ATD+AA Sbjct: 246 RRILFMRTKHQARKLAKQLTDAGVPSVDLHGNLSQPARERNLAAFSSGEARVLVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + D+ELV+H + + LHRSGRT RAG G V V+ +R ++L R A + Sbjct: 306 RGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLLRRAGI 365 Query: 366 SV 367 +V Sbjct: 366 TV 367 >gi|134102389|ref|YP_001108050.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133915012|emb|CAM05125.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 496 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 191/374 (51%), Gaps = 7/374 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + AL + G +Q A + L +DVL QTGSGKT+AFGL L LA Sbjct: 21 GLPERLVRALGDLGMTEAFPIQAATIPDALGGRDVLGRGQTGSGKTLAFGLPL----LAM 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P L + PTRELA QV L+ L G+ V +GG+S R+ L+ G Sbjct: 77 QGSSARPLHPRGLVLVPTRELATQVTDSLKPLAKALGLYVREVVGGMSFSRQADTLRRGV 136 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH+R +S ++ LDEAD+M D+GF + +LD P + L+F Sbjct: 137 DVLVATPGRLSDHVRQGTCVLSEVERTALDEADQMADMGFLPQVRELLDLVPADGQRLLF 196 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L Y D V ++A +D+ +LV + + + I G Sbjct: 197 SATLDGDVDKLVHEYMTDPVVHSLAPPAASVDSMDHHQLLVTAEQKQDVLARIGAREG-- 254 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ R T+ L + AL G +Q RS L+ R G +AT+VAA Sbjct: 255 RTIMFVRTKHHADRLTRKLRAAGVRAGALHGGKAQNARSRILEEFRQGGTTTLVATNVAA 314 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LV+H E ++P++ LHR+GRT RAG G V ++ + +R + +A V Sbjct: 315 RGIHVDDVSLVVHVEPPADPKDYLHRAGRTARAGATGTVVTLVTDDQKRAFRAMTAKAGV 374 Query: 366 -SVVWEPAPSVEAI 378 + + AP+ E + Sbjct: 375 EATATKVAPADEEL 388 >gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris MCS10] gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10] Length = 498 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 185/344 (53%), Gaps = 14/344 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA+ E GY T +Q + L +DVL AQTG+GKT +F L L L + A Sbjct: 14 EAIQEAGYSEPTPIQAGAIPAALAGRDVLGIAQTGTGKTASFTLPLIERLSRGRAK---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L IAPTRELA Q E + +A+ IGGV+ + L GA +++ TP Sbjct: 71 RMPRSLIIAPTRELAAQCAENFETYSKGQKLSMALLIGGVAFGPQEEILNKGADVLIATP 130 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATI 189 GRL DH RGK L ++ ++ +V+DEAD MLD+GF D+E I P +R+ L FSAT+ Sbjct: 131 GRLLDHFGRGK-LLMTGVQMLVVDEADRMLDMGFIPDLEKIFSLVPPAPRRQTLFFSATM 189 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-----AIVNILRYHGA 244 I +L + +D RV ++ + ++I +++ L+D A+ + G Sbjct: 190 PKEIQSLVDRFLRDPERVEVSRPAQTGANITQ--LMIRLTDNSAKAKRLALRQAMSREGV 247 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 KN I+F + + V + L H F + G+L Q R+ L + G R +A+DVA Sbjct: 248 KNGIIFSNRKRDVDVVARSLQRHGFSAAPIHGDLDQSARTATLADFKAGTLRFLVASDVA 307 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARG+D+PD+ V + ++ + ++ +HR GRTGRAG+ G SV + Sbjct: 308 ARGLDIPDVSHVFNYDMPHHADDYVHRIGRTGRAGKSGESVTIF 351 >gi|225441549|ref|XP_002281113.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 622 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 126/382 (32%), Positives = 201/382 (52%), Gaps = 23/382 (6%) Query: 11 IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63 +GEAL++ YV T VQ + L KD++ AQTGSGKT AF + S ++ Sbjct: 170 LGEALNQNIRRCKYVKPTPVQRHAIPISLSGKDLMACAQTGSGKTAAFCFPIISGIMTGQ 229 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 A+ R + PLAL ++PTREL+ Q+ E +TGV V V GG ++++ R+L+ Sbjct: 230 FAQRPRGARTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELE 289 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178 G I+V TPGRL D + +++ ++ + LDEAD MLD+GF I I++ P Sbjct: 290 RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPG 349 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ ++FSAT I LA ++ + + + I R V SD+ + ++++ Sbjct: 350 VRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDL 409 Query: 239 LRYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 L A A +VF T+ L + F + G+ +QQER +AL+ + Sbjct: 410 LHAQRANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREHALRSFK 469 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 G + +ATDVAARG+D+P + V++ +L ++ ++ +HR GRTGRAG+ G++ +N Sbjct: 470 SGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNEN 529 Query: 352 ---MQRRAERLFREANVSV-VW 369 + R L +EAN V W Sbjct: 530 NSSLARPLADLMQEANQEVPAW 551 >gi|206579391|ref|YP_002239559.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae 342] gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55] gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae 342] gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55] Length = 451 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 194/370 (52%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GYV T +Q+ + ++ +D++ SAQTG+GKT F L L L+ + Sbjct: 15 AVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQRLIDKEPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG + + V GGVS++ + L+ G I+V TPG Sbjct: 75 PVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D +++ ++ +VLDEAD MLD+GF DI +L P +R+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + V +A N I V + + + ++ + +VF T Sbjct: 195 KGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R ERL ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIA 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|10177293|dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] Length = 564 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 199/366 (54%), Gaps = 7/366 (1%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 MK+F+ N P I EA+++ G+ T +Q L+ +D++ A+TGSGKT+A+ L Sbjct: 137 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLP 195 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 A ++ R P+ L +APTRELAVQ+ E ++GV GG + Sbjct: 196 ALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQI 255 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 RDL+ G IV+ TPGRL D + + N+ + +VLDEAD MLD+GF I I+ Sbjct: 256 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 315 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237 R+ L++SAT + TLA+ + +D + I S + + + I+ +V ++ N ++ Sbjct: 316 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 375 Query: 238 ILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +L+ G+K ++F T+ + T+ L + +A+ G+ +Q ER L + GR+ Sbjct: 376 LLKQLMDGSK-ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRS 434 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + ATDVAARG+D+ D++ V++ + + E+ +HR GRTGRAG KGM+ + + Sbjct: 435 PIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKF 494 Query: 356 AERLFR 361 A L + Sbjct: 495 ARELVK 500 >gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans P7] Length = 375 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 117/352 (33%), Positives = 189/352 (53%), Gaps = 7/352 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + I + L G T VQ ++ +DV+V +QTG+GKT+AF L + + + Sbjct: 8 ISEDIVKILKNNGITEPTPVQAESISLIKNGRDVIVESQTGTGKTLAFLLPIFENISTKV 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 D A AL + PTRELA+Q+ E L + + GG + + + L+ G H Sbjct: 68 D------AVQALILTPTRELALQITEEALKLKQAKDINILAAYGGKDIGSQLKKLKTGIH 121 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL DH+ K +++S LK VLDEAD+ML +GF++D+E I+ + KKR+ L FS Sbjct: 122 LIIATPGRLLDHLERKTIDLSKLKTFVLDEADQMLLMGFKNDVETIIKETSKKRQTLCFS 181 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 ATI+ + LA Y K+ + V I E I + V + +A+ +L Sbjct: 182 ATINSDVKRLAYRYTKEPLAVTINKEEVTLDAIKQQVVETTDRRKQDALCTVLNQDNPYM 241 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+FC T+ V L + L ++ Q +R ++ R+G + IATDVA+R Sbjct: 242 AIIFCRTKRRVDELEVSLYKRGCDCKKLHSDILQSKRERIMKAFRNGDFQYLIATDVASR 301 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357 G+D+ + + + ++ + E+ +HR GRTGRAG +G + +F+ P++ R E Sbjct: 302 GLDISGVSHIYNYDIPESAESYIHRIGRTGRAGEEGYTCLFIDPKDRLRLEE 353 >gi|54302911|ref|YP_132904.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9] gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9] Length = 471 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 185/339 (54%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EA++++GY + +Q + + KDV+ +AQTG+GKT AF L + L + R Sbjct: 18 ILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVLERL-SNGPRVK 76 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL + PTRELA QV + LYAK + AV GGV ++ + L+ GA ++V Sbjct: 77 PNQV-RALVLTPTRELAAQVAESVA-LYAKNLPLSSAVVFGGVKINPQMMRLRQGADVLV 134 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + + ++ +VLDEAD MLD+GF DI +L + PK+R+ L+FSAT Sbjct: 135 ATPGRLLDLYNQRAVRFDQIEVLVLDEADRMLDMGFIRDIRKLLAAMPKQRQNLLFSATF 194 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V +++ N + V S + N + +L+ + +V Sbjct: 195 SDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLLTKLLKENNWGQVLV 254 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R T L + A+ G SQ R+ AL + +V +ATD+AARG+D Sbjct: 255 FTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVLVATDIAARGLD 314 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L V++ EL E+ +HR GRTGRAG +G ++ ++ Sbjct: 315 IEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLV 353 >gi|85103782|ref|XP_961600.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A] gi|74625334|sp|Q9P735|FAL1_NEUCR RecName: Full=ATP-dependent RNA helicase fal-1 gi|16415977|emb|CAB88547.2| probable translation initiation factor eIF-4A [Neurospora crassa] gi|28923147|gb|EAA32364.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A] Length = 400 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 45 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 98 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 99 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 158 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 159 IRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 218 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V D + + + ++ A++FC+TR V Sbjct: 219 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 278 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ G++ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 279 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 338 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 339 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 375 >gi|296118823|ref|ZP_06837399.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM 20306] gi|295968312|gb|EFG81561.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM 20306] Length = 407 Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 122/343 (35%), Positives = 189/343 (55%), Gaps = 7/343 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+ RG + ++QE L L D++ A+TG GKT FG+ L + D Sbjct: 7 ICDALAARGITHTFAIQELTLPIALNGTDLIGQARTGMGKTYGFGVPLLDRVFDAADVPE 66 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +P AL + PTRELAVQV +L A+ V +A +GG ++ L+ G +VVG Sbjct: 67 LDGSPRALVVVPTRELAVQVANDLSIAAAQIPVRIATILGGRDFEAQQEALRAGVDVVVG 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPKKRRMLMFSA 187 TPGR+ D + K L + + +VLDEADEMLDLGF D+E IL + SP + ++FSA Sbjct: 127 TPGRILDLYQRKNLRLDKVSVLVLDEADEMLDLGFLPDVEKILAALKDSPHQ--TMLFSA 184 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAK 245 T+ AI LA+ + V + +E+ + + ++ D+ + IL+ Sbjct: 185 TMPGAIVRLARTFMNRPVHIRADAESSAPTHASTQQIIFQAHRMDKLPVLSRILQVPERG 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + ++ + LA+ F V A+ G+L+QQ R AL RDG + +ATDVA+ Sbjct: 245 RTLVFTRTKRTAAQVAQDLADLGFTVGAVHGDLNQQAREQALAGFRDGTVPILVATDVAS 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ D+ VI+ ++ + +HR GRTGRAG G ++ ++ Sbjct: 305 RGIDVEDVTHVINYQVPDDAMTYVHRIGRTGRAGHSGTAITLV 347 >gi|327405104|ref|YP_004345942.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320612|gb|AEA45104.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM 16823] Length = 367 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 117/358 (32%), Positives = 194/358 (54%), Gaps = 11/358 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P++I L+E G+ T +QE + + +D + A TGSGKT+A+G+ L + A++ Sbjct: 9 PKLISR-LAELGFSEPTPIQEHAWKYLIEKHQDYVGQAHTGSGKTIAYGVPLLQRIDAKD 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125 A+ + PTREL VQ + L L + + G + ++R+LQ Sbjct: 68 KDVQ------AVILVPTRELVVQTTKALYKLSKNLDKFFIQSIVKGDDIEEQKRNLQRPT 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H++V TPGRL + IR K +++ +K +VLDEADE+ GF +I+ IL + + +F Sbjct: 122 HVLVATPGRLLELIRLKAVSLRRMKTIVLDEADELYAKGFMKEIDKILAETNDFHKKWLF 181 Query: 186 SATISPAITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SATI +T KN +DA + IA++ + I+++ V D+ +++ L Sbjct: 182 SATIHGELTKWIKNTLHRDAPQAIIATKKVMNPKIEHQYVECQKEDKTMLLLDFLTTMKK 241 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 IVFC T+ V + L H +V + GE+ +ER A++M + IATD+ Sbjct: 242 GRGIVFCRTKGDVEHVARFLRTHEKKVTEIYGEMFPKEREKAMRMFSQEHTQYLIATDIT 301 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 ARG+D PDL V+H +L +P+ HRSGRT RAG++G+S+ ++ + ++R+ R +E Sbjct: 302 ARGMDFPDLAFVVHYQLPDDPDYYTHRSGRTARAGKRGISLSLV-EAVERKKLRYIQE 358 >gi|294658482|ref|XP_460822.2| DEHA2F10538p [Debaryomyces hansenii CBS767] gi|218511820|sp|Q6BLU9|PRP28_DEBHA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 gi|202953164|emb|CAG89165.2| DEHA2F10538p [Debaryomyces hansenii] Length = 580 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 190/368 (51%), Gaps = 38/368 (10%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST--------LLAENDRFS 70 GY + T +Q A + L +D++ A+TGSGKT+AF L L S LL E+ + S Sbjct: 174 GYDSPTPIQRASIPLALNGRDIVGIAETGSGKTLAFLLPLFSYILSVDSNYLLYEHQQES 233 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + PL L +APTRELA+Q+ +E + K + V IGG ++NG HIVV Sbjct: 234 NFNKPLGLILAPTRELALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVVA 293 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------- 177 TPGRL D + +N+S+ +DEAD+M+D+GF ++ IL+ P Sbjct: 294 TPGRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSILNYLPASEKLETTIDGKI 353 Query: 178 ---KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 KKR LMF+ATISP I + KNY + I + +I+ + + Sbjct: 354 FNIKKRITLMFTATISPPIEKITKNYLMKPGYLFIGNVGEAVDNINQQFEYFGARQSSDE 413 Query: 235 IVN---------ILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLF-QVVALSGELSQ 280 I++ ILR+H +N I+F + + + L+ F + G SQ Sbjct: 414 ILDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVIHGSKSQ 473 Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340 + R A+ R+G+ ++ IATDVAARGID+P++ LV++ +++ + +HR GRTGRAG Sbjct: 474 EARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIGRTGRAGN 533 Query: 341 KGMSVFVI 348 KG S I Sbjct: 534 KGTSCTFI 541 >gi|154285130|ref|XP_001543360.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1] gi|160385733|sp|A6QSQ0|FAL1_AJECN RecName: Full=ATP-dependent RNA helicase FAL1 gi|150407001|gb|EDN02542.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1] Length = 450 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 189/340 (55%), Gaps = 14/340 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T+L E Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG +V + R L +G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 LVI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374 >gi|120599366|ref|YP_963940.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|146292637|ref|YP_001183061.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|120559459|gb|ABM25386.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145564327|gb|ABP75262.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 449 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 191/346 (55%), Gaps = 5/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ Q + ++L G T++QE L L KD++ S++TGSGKT+AF L +++ Sbjct: 7 SLDQRLLQSLKHMGITAPTAIQEQTLPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P L + PTRELA QV +L L A T +GG + + + + L Sbjct: 67 --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184 H +V TPGR+ DH+ K L ++ L+ ++LDEAD MLDLGF ++ I +++ KRR LM Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHKRRQTLM 184 Query: 185 FSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242 FSAT+ + I +A K+ V I + + +H+DI R L D A++ +L+ Sbjct: 185 FSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEALLTRLLQDE 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K IVF +TR R L+ F ALSG+L Q R+ + G+ ++ + TD Sbjct: 245 THKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQQILVTTD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VA+RG+DL ++ LVI+ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 305 VASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|262381688|ref|ZP_06074826.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B] gi|262296865|gb|EEY84795.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B] Length = 421 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 182/343 (53%), Gaps = 3/343 (0%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++ + I +AL + GY T +Q + + D+L AQTG+GKT AF + + Sbjct: 3 FEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQR 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + AL + PTRELA+Q+G G+ V GGV + L Sbjct: 63 LYLQKKK-GYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEAL 121 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I++ TPGRL D I +++ L+ VLDEAD MLD+GF DI+ IL PKKR+ Sbjct: 122 ERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 181 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ P I LA + +V + + ID V +++ N + ++L Sbjct: 182 SLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLEN 241 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ ++F T+ + +VL++ A+ G SQ R AL +D RV IAT Sbjct: 242 PELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIAT 301 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 D+AARGID+ L VI+ EL + PE +HR GRTGRAGR+G++ Sbjct: 302 DIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVA 344 >gi|329912990|ref|ZP_08275858.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] gi|327545464|gb|EGF30669.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 410 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 184/361 (50%), Gaps = 16/361 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY T VQ + L +D++ +AQTG+GKT F L L L E + S ++ Sbjct: 16 LDTLGYSTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPQVS-SNC 74 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 L + PTRELA QV + A + V GGVS++ + L+ G ++V TPGR Sbjct: 75 VRVLVLVPTRELAEQVHQAFGEYGASLPLRTHVAYGGVSINPQMMKLRKGLDVLVATPGR 134 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D R + L+ +VLDEAD MLDLGF +++ + + PKKR+ L+FSAT S I Sbjct: 135 LLDLYRQNAVKFEQLQTLVLDEADRMLDLGFSRELDEVFAALPKKRQTLLFSATFSDEIR 194 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 L+ + VR+ I+ N I A+ V + +++L+ H +VF TR Sbjct: 195 ALSTTLLDNPVRIEISPRNTPVKTIKQWAIPVDKKRKPELFLHLLKKHRWGQVLVFVKTR 254 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V +L + A+ G+ Q R AL+ + ++ +ATDVAARG+D+ DL Sbjct: 255 RGVDELVDILLAQGIRADAIHGDKPQPARLRALEGFKSRDVQILVATDVAARGLDIDDLP 314 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAERL 359 V++ +L E+ +HR GRTGRAG GM+V + QN+QR AE+ Sbjct: 315 QVVNFDLPIVAEDYIHRIGRTGRAGASGMAVSLLCADEAPLLAAIEMLTGQNLQRNAEQG 374 Query: 360 F 360 F Sbjct: 375 F 375 >gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa Japonica Group] Length = 596 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 180/317 (56%), Gaps = 8/317 (2%) Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133 P L +APTRELA QV +E++ K + VC+ GGVS + ++ L G +VVGTPG Sbjct: 20 PRVLVLAPTRELAKQVEKEIKESAPK---LSTVCVYGGVSYNVQQNALSRGVDVVVGTPG 76 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D I G L + +K +VLDEAD+ML +GF +D+E IL P +R+ ++FSAT+ + Sbjct: 77 RIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWV 136 Query: 194 TTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVF 250 L++ Y + + +++ + + I A+ + + + + +++ Y IVF Sbjct: 137 KKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVF 196 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L + AL G++SQ +R L R G+ V +ATDVAARG+D+ Sbjct: 197 TKTKRDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 255 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 P+++L+IH EL ++PE +HRSGRTGRAG+ G ++ + + +R L R+ + Sbjct: 256 PNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFI 315 Query: 371 PAPSVEAIRERDAQRIL 387 P++E + E A+ ++ Sbjct: 316 SPPAIEDVLESSAEHVI 332 >gi|282855131|ref|ZP_06264463.1| DEAD/DEAH box helicase [Propionibacterium acnes J139] gi|282581719|gb|EFB87104.1| DEAD/DEAH box helicase [Propionibacterium acnes J139] Length = 700 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 195/365 (53%), Gaps = 11/365 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295 Query: 65 -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 296 REDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKR 349 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + L Sbjct: 350 GVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRL 409 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ A+ L + Y + V + + + + + A + ++ + I G Sbjct: 410 LFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRSG 469 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATDV Sbjct: 470 --HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDV 527 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+A Sbjct: 528 AARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQA 587 Query: 364 NVSVV 368 V V Sbjct: 588 GVKPV 592 >gi|255013488|ref|ZP_05285614.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_7] Length = 421 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 182/343 (53%), Gaps = 3/343 (0%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++ + I +AL + GY T +Q + + D+L AQTG+GKT AF + + Sbjct: 3 FEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQR 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + AL + PTRELA+Q+G G+ V GGV + L Sbjct: 63 LYLQKKKGYKRGIK-ALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEAL 121 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I++ TPGRL D I +++ L+ VLDEAD MLD+GF DI+ IL PKKR+ Sbjct: 122 ERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 181 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ P I LA + +V + + ID V +++ N + ++L Sbjct: 182 SLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLEN 241 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ ++F T+ + +VL++ A+ G SQ R AL +D RV IAT Sbjct: 242 PELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIAT 301 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 D+AARGID+ L VI+ EL + PE +HR GRTGRAGR+G++ Sbjct: 302 DIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVA 344 >gi|171910495|ref|ZP_02925965.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM 4136] Length = 673 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 133/377 (35%), Positives = 209/377 (55%), Gaps = 10/377 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++ G+ + +QE + P L +DV+ +QTGSGKT+AF + + + DR Sbjct: 56 ILKAMTALGFEQPSPIQEKGIPPALEGRDVVGQSQTGSGKTMAFAIPVVQKI-DPRDR-- 112 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA+QV E+ L K G+ GG + R+ R L++GA IVV Sbjct: 113 ---GVRALIMCPTRELAMQVCEEVAKLTVHKPGLKALPIYGGATYDRQIRGLRDGAQIVV 169 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ D + L + L+ +V DEADEMLD+GFR+DI+ ++ P+ R+ L FSAT+ Sbjct: 170 GTPGRILDFLERGMLRLDALQTLVFDEADEMLDMGFREDIDSLMALVPENRQTLFFSATL 229 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + I L ++Y K+A + I + I+ R V + + +L + AIV Sbjct: 230 AGPIRHLVESYTKNAALITIEHKALTVPTIEQRYYEVNSRSKIEVLCRLLDIENPRLAIV 289 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +T+ +V T L + V L G+L+Q R ++ R G V ATDVAARG+D Sbjct: 290 FANTKKAVDDITDALMARSYGVDRLHGDLNQTMRDRVMKNFRAGNVEVLAATDVAARGLD 349 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 + D++LV++ +L + E+ +HR GRTGRAGR G ++ ++ +R+ R A V++ Sbjct: 350 VDDVDLVVNFDLPYDEEDYVHRIGRTGRAGRSGKAMSLVSGRDIFLLQRIQRYAKVNIAR 409 Query: 370 EPAPSVEAIRERDAQRI 386 P+ E + D +R+ Sbjct: 410 HKVPTREEV---DGKRV 423 >gi|119944643|ref|YP_942323.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] gi|119863247|gb|ABM02724.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas ingrahamii 37] Length = 439 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 211/375 (56%), Gaps = 9/375 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 +LS G+ T +Q + + KD+L S++TGSGKT+A+ L +L R Sbjct: 15 SLSHLGFTETTEIQAKAVPIAVAGKDLLASSKTGSGKTLAYLLPAMQRVL--KTRALTKR 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV +L L + T + + GG + + + + L H VVGTPG Sbjct: 73 DPRVLILTPTRELAKQVYAQLRLLVSNTSLKSTLVSGGENFNDQVKALDKDPHFVVGTPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 R+ DH++ L++ L+ ++LDEAD MLDLGF + ++ + ++ + R+ L+FSAT+ A Sbjct: 133 RIVDHLKKGLLHLEGLELLILDEADRMLDLGFAEQLKAVNSAANHRLRQTLLFSATLGHA 192 Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250 + A K VR+ I EN+QHS+I R L L+ ++ + + ++ K AI+F Sbjct: 193 EVNEFASELLKAPVRIAIGEENQQHSEISQRFYLADNLNQKEKLLFHFIKNEEIKQAIIF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +TR R + L+E + +AL G+L+Q R++ + G+A++ + TD+A+RG+DL Sbjct: 253 TATRLDAQRLSAALSEKGYGTLALHGDLTQNNRNSIMDSFSRGKAQLLVTTDIASRGLDL 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQ---NMQRRAERLFREANVS 366 ++ VI+ ++ + E +HR GRTGRAG KG ++ +I P+ N ++ E + R+ + Sbjct: 313 LNVSHVINFDIPKHTEEYIHRIGRTGRAGEKGDAISIIGPKDWVNFKKVEEFVQRQLTFN 372 Query: 367 VVWEPAPSVEAIRER 381 V P + I E+ Sbjct: 373 RVDGIKPQFKGIVEK 387 >gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC 43184] gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC 43184] Length = 427 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 116/358 (32%), Positives = 196/358 (54%), Gaps = 8/358 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ + + + L ++ T VQE + L KD++ AQTG+GKT A+ L + + L Sbjct: 7 DLEEAVLDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL--- 63 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + PA+A A+ +APTRELA Q+ +++E + + V V G++ +++R ++ Sbjct: 64 SKGLHPANAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKRGME 123 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 GA IV+ TPGRL HI+ +++S + VLDEAD MLD+GF DDI + P + Sbjct: 124 MGADIVIATPGRLLSHIKLGTVDLSQVSFFVLDEADRMLDMGFYDDIMQVYKLLPATCQT 183 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT+ P I TLA+ K+ V IA +R I A + + + ++ Sbjct: 184 IMFSATMPPKIRTLAQTILKNPEEVKIAI-SRPPETIMQTAYVCYDMQKLRILEDLFSKS 242 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + I+F S++ V L F V A+ +L Q +R ++ ++GR + +ATD Sbjct: 243 RPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATD 302 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL 359 V +RGID+ D++LVI+ ++ +PE+ +HR GRT R +G+++ I Q + +R+ Sbjct: 303 VVSRGIDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGEGLAITFISTEEQFQFKRI 360 >gi|320589197|gb|EFX01659.1| dead deah box DNA helicase [Grosmannia clavigera kw1407] Length = 734 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 181/356 (50%), Gaps = 29/356 (8%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPL 76 GY T +Q A + L+ +D++ A TGSGKT AF L L + L D S P Sbjct: 322 GYTEPTPIQRAAIPIALQGRDLIGVAVTGSGKTAAFLLPLLVYIKELPPLDEISKNDGPY 381 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 AL +APTRELA Q+ E G V +GG S+ + L+NGA IVV TPGRL Sbjct: 382 ALILAPTRELAQQIESEARKFATPFGYTVVSIVGGHSLEEQAYALRNGAEIVVATPGRLV 441 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------------- 177 D I + L +S V++DEAD M+DLGF D + ILD+ P Sbjct: 442 DCIERRLLVLSQCCYVIMDEADRMIDLGFEDPLNKILDAMPTANEKPDTDEAEDARAMTQ 501 Query: 178 ------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 + R +M++AT+ P + +AK Y + V I + ++ R V+ DR Sbjct: 502 YLGGKIRYRETMMYTATMPPVVEKIAKRYLRRPAIVTIGNVGEAVETVEQRVEFVSGEDR 561 Query: 232 DNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 + + G A IVF + + + K + + F V L G +Q +R ALQ Sbjct: 562 RKKRLQEILQSGQFAAPIIVFVNIKRNCEMVAKDVRQMGFTTVTLHGSKTQDQREAALQA 621 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +R G+A V +ATD+A RGID+ D+ LVI+ ++++ E HR GRTGRAG+ G+++ Sbjct: 622 LRQGKADVLVATDLAGRGIDVADVSLVINFNMATSVEQYTHRIGRTGRAGKSGVAI 677 >gi|23501930|ref|NP_698057.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330] gi|23347874|gb|AAN29972.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis 1330] Length = 535 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 197/375 (52%), Gaps = 9/375 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I V+ + + G +Q + L +D+L AQTGSGKT AF L + ++ Sbjct: 94 ITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLG 153 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 D+ P +A AL +APTRELAVQ+ + + + + A+ +GGVS + + + G Sbjct: 154 DKRRPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGID 212 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL D + +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FS Sbjct: 213 VLIATPGRLTDLMCDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFS 272 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I +LA+ +D VRV +A + S+I V ++ + +L ++ Sbjct: 273 ATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRS 332 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + L + V A+ G SQ R AL RDG R+ +ATD+AAR Sbjct: 333 VIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAAR 392 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE 362 GID+P + V++ +L PE +HR GRTGR G G S+ + ++ R ER+ R Sbjct: 393 GIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRS 452 Query: 363 ----ANVSVVWEPAP 373 + V PAP Sbjct: 453 KLSIKDAPVKLAPAP 467 >gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)] gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)] Length = 464 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] Length = 482 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 188/340 (55%), Gaps = 10/340 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY + T +Q+ + L +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + A + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +V+DEAD MLD+GF DIE I P R+ L F+AT+ I Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNAI 248 + + + R+ ++ + + V + S + +LR+ KNAI Sbjct: 192 RRVTDAFLHNPQRIEVSRPATTAATVTQSQV--SCSREPHEKRELLRHLLREAKELKNAI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +FC+ + V+ K L +H F V AL G++ Q R+ +L R G + +A+DVAARG+ Sbjct: 250 IFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLVASDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+P++ V++ ++ +P++ +HR GRTGRAGR G ++ ++ Sbjct: 310 DIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIV 349 >gi|283049400|gb|ADB07168.1| DEAD-box RNA helicase-like protein [Prunus persica] gi|283049402|gb|ADB07169.1| DEAD-box RNA helicase-like protein [Prunus persica] Length = 413 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 190/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YAVVQCQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R N VV E PS Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLYDIQRFYN--VVIEELPS 407 >gi|224371289|ref|YP_002605453.1| RecQ2 [Desulfobacterium autotrophicum HRM2] gi|223694006|gb|ACN17289.1| RecQ2 [Desulfobacterium autotrophicum HRM2] Length = 537 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 117/345 (33%), Positives = 191/345 (55%), Gaps = 6/345 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + A+S+ + VQ +L L KD AQTG+GK+ AF + + + L+ Sbjct: 102 DLPLGLMHAISDENFQYCMPVQAEVLPHTLMGKDATAKAQTGTGKSAAFLVTIIARLMKN 161 Query: 66 NDRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 R P AL I PTREL +Q+ ++ + L T + GG+ R++ L + Sbjct: 162 PTRGKREKGTPRALIIEPTRELVLQIEKDAKALTLYTPLRTVSVFGGMDYKRQQDQLAS- 220 Query: 125 AH--IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKR 180 AH I+ TPGRL D +R K +N+ ++ +V+DEAD +LD+GF D+ I+ ++P K+R Sbjct: 221 AHVDIIAATPGRLMDFMRQKLINLGKIEILVIDEADRLLDMGFIPDMRNIIYNTPHKKER 280 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L FSAT++P I +A + D V I + I+ + +V + + N++ Sbjct: 281 QTLFFSATLAPEILRMANQWTVDPAVVEIDPDKTAADSINQKVFIVTEDQKFPLLYNLIS 340 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + I+F + R++ R + L + LSGE+SQ++R L R+G+ RV +A Sbjct: 341 GEKLERVILFVNMRSTTRRIAQRLVQFDISSEILSGEVSQKQRIRTLDDFRNGKVRVLVA 400 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+ + + VI+ +L +PE+ +HR GRTGRAG +G+SV Sbjct: 401 TDVAARGLHIEGVSHVINYDLPQDPEHYIHRIGRTGRAGAEGISV 445 >gi|149714248|ref|XP_001504169.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX23 (DEAD box protein 23) (100 kDa U5 snRNP-specific protein) (U5-100kD) (PRP28 homolog) isoform 1 [Equus caballus] Length = 820 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|91792775|ref|YP_562426.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] gi|91714777|gb|ABE54703.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans OS217] Length = 468 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 123/344 (35%), Positives = 190/344 (55%), Gaps = 15/344 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-----LASTLLAEND 67 ++L G T +QE L L KD++ S++TGSGKT+AF L +++ L++ D Sbjct: 25 DSLKHLGITTPTPIQEQALPIALTGKDLMASSKTGSGKTLAFLLPAMQRIISTKALSKRD 84 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P L + PTRELA QV +L L A T +GG + + + + L H Sbjct: 85 -------PRVLILLPTRELAQQVYGQLRLLVANTQYKAVSILGGENFNDQAKALSREPHF 137 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFS 186 +V TPGR+ DH++ + L+++ L+ ++LDEAD MLDLGF + I ++ KRR LMFS Sbjct: 138 IVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINAAADHKRRQTLMFS 197 Query: 187 ATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGA 244 AT+ I +A K + I + +H+DI R +LV D A++ ++L Sbjct: 198 ATLEHDEINEIAATLLKSPNHIAIGAAYTEHADITQRIILVDHLDHKQALLEHVLTNETN 257 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F +TR R +LA+ F ALSG L+Q R+ + G+ ++ + TDVA Sbjct: 258 KQIIIFTATRVDTERLASLLADKGFATAALSGNLNQGARNQIMDQFARGQKQILVTTDVA 317 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +RG+DL ++ LVI+ ++ E +HR GRTGRAG KG +V ++ Sbjct: 318 SRGLDLINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLV 361 >gi|68465332|ref|XP_723365.1| hypothetical protein CaO19.12334 [Candida albicans SC5314] gi|46445394|gb|EAL04663.1| hypothetical protein CaO19.12334 [Candida albicans SC5314] Length = 564 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 115/318 (36%), Positives = 185/318 (58%), Gaps = 13/318 (4%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L KDV+ A+TGSGKT AFG+ + ++ + + + L I+PTRELA+Q+ L Sbjct: 188 LSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLS----VLCISPTRELALQIYDNL 243 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 L A +GV GGVS + R L+ A++VV TPGRL D I +N+ + +VL Sbjct: 244 IELTADSGVNCVAVYGGVSKDDQIRKLKT-ANVVVATPGRLVDLINDGAINLGKVNYLVL 302 Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213 DEAD ML+ GF +DI+ I+ ++S +R+ LMF+AT + LA N+ V+V + + Sbjct: 303 DEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRD 362 Query: 214 RQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA-----IVFCSTRASVSRFTKVLAE 266 ++ V+ ++ D++ ++ +LR + A + ++F + SR L Sbjct: 363 ELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKR 422 Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326 + F V A+ G+LSQQ+R+ AL + G++ + +ATDVAARG+D+P++++VI+ E Sbjct: 423 NRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIE 482 Query: 327 NLLHRSGRTGRAGRKGMS 344 + +HR GRTGRAG KG + Sbjct: 483 DYVHRIGRTGRAGAKGTA 500 >gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80] gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52] gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395] gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457] gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2] gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286] gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33] gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9] gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236] gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10] gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101] gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1] gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27] gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757] gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80] gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52] gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457] gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395] gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2] gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395] gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9] gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33] gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286] gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236] gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10] gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101] gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27] gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1] gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757] Length = 451 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|50554139|ref|XP_504478.1| YALI0E27715p [Yarrowia lipolytica] gi|74659776|sp|Q6C4D4|DBP2_YARLI RecName: Full=ATP-dependent RNA helicase DBP2 gi|49650347|emb|CAG80081.1| YALI0E27715p [Yarrowia lipolytica] Length = 552 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 194/365 (53%), Gaps = 10/365 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P + + + ++G+ T++Q L +DV+ A TGSGKT+++ L + A+ Sbjct: 123 FPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIVHINAQ- 181 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 S P+ L +APTRELAVQ+ +E + K+ + C+ GGV ++ RDL G Sbjct: 182 PMLSHGDGPIVLVLAPTRELAVQIQQECS-KFGKSSKIRNTCVYGGVPRGQQIRDLARGV 240 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL D + N+ + +VLDEAD MLD+GF I I+D R+ LM+ Sbjct: 241 EIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 300 Query: 186 SATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNI--LRY 241 SAT + LA +Y KD ++VNI S + H+ V RD + ++ + Sbjct: 301 SATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVKHLETVME 360 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + ++F T+ TK L + + +A+ G+ QQER L R G++ + +AT Sbjct: 361 NKESKCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGKSPIMVAT 420 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359 DVA+RGID+ + VI+ + SN E+ +HR GRTGRAG KG + ++ +++A L Sbjct: 421 DVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQARDLLV 480 Query: 360 -FREA 363 REA Sbjct: 481 ILREA 485 >gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22] gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22] Length = 451 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 194/370 (52%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GYV T +Q+ + ++ +D++ SAQTG+GKT F L L L+ + Sbjct: 15 AVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQRLIDKEPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG + + V GGVS++ + L+ G I+V TPG Sbjct: 75 PVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D +++ ++ +VLDEAD MLD+GF DI +L P +R+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + V +A N I V + + + ++ + +VF T Sbjct: 195 KGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R ERL ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIA 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|229528359|ref|ZP_04417750.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)] gi|229334721|gb|EEO00207.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)] Length = 422 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 189/369 (51%), Gaps = 7/369 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72 LSE G VN T +Q+ + L+ KDVL AQTG+GKT AFGL L + + R + + Sbjct: 20 TLSELGIVNPTPIQQQAVPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNS 79 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA QV L+ T + + GG S+ + L+ G I++ TP Sbjct: 80 KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A +D + V + N + V + + ++ + +VF Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQIVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368 LE V++ ++ E+ +HR GRTGRAG G++V ++ + Q + E + R N + Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWL 379 Query: 369 --WEPAPSV 375 +EP+P V Sbjct: 380 KGFEPSPVV 388 >gi|255553305|ref|XP_002517695.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223543327|gb|EEF44859.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 585 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 117/352 (33%), Positives = 184/352 (52%), Gaps = 9/352 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+ I + L +G V T +Q L L +D++ A TGSGKT+AF L + + E Sbjct: 147 PEPILKTLKAKGIVQPTPIQIQGLPVILSGRDMIGIAFTGSGKTLAFVLPMITIAFQEEI 206 Query: 68 RF--SPASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSVHRERR 119 +P P L I P+RELA Q +E T + +C+GGV + + Sbjct: 207 MMPIAPREGPFGLIICPSRELARQTYEVVEQFLIPTRRAGYPELRALLCVGGVDMRSQLE 266 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 ++ G HIVV TPGRL D + K +N+ + + + LDEAD ++DLGF DDI I + Sbjct: 267 VVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREIFSYFKAQ 326 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ + AK+ V VN++ + D+ V D+ ++ L Sbjct: 327 RQTLLFSATMPTKVQNFAKSALVKPVIVNVSRAGAANLDVIQEIEYVKQEDKTAYLLKCL 386 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 ++FC ++A V + + L +VVA+ G Q+ER A+ + G+ V I Sbjct: 387 E-KTPPQVLIFCESKADVDKIHEYLLLKGVEVVAIHGGKDQEEREYAISSFKSGKKDVLI 445 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 ATDV ++G+D PD++ VI+ ++ + EN +HR GRTGR G+ G++ I +N Sbjct: 446 ATDVVSKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 497 >gi|309778667|ref|ZP_07673444.1| ATP-independent RNA helicase DbpA [Ralstonia sp. 5_7_47FAA] gi|308922582|gb|EFP68202.1| ATP-independent RNA helicase DbpA [Ralstonia sp. 5_7_47FAA] Length = 471 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 192/356 (53%), Gaps = 8/356 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A + Sbjct: 29 LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLARLDARSFDVQ---- 84 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A+ + PTRELA QV +E+ L A+ V V GG + + L++GAH++VGTPG Sbjct: 85 --AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAHVIVGTPG 142 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L + LK +VLDEAD MLD+GF DDI ++ P R+ L+FSAT I Sbjct: 143 RIMDHLERGNLGLGALKTLVLDEADRMLDMGFFDDIATVVRQCPADRQTLLFSATYPEGI 202 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L++ ++ V + E S I R V S R +A+ +LR++ + + FC+T Sbjct: 203 AKLSQRILRNPKEVKL-EERHDDSKIRQRFYEVTDSQRLHAVGQLLRHYRPVSTLAFCNT 261 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL +AL GEL Q+ER L + V +ATDVAARG+D+ L Sbjct: 262 KQQCRDLLDVLRAQGIHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 321 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369 E VI+ +++ +PE +HR GRTGRA G ++ + + R + + V W Sbjct: 322 EAVINVDVTPDPEVHVHRIGRTGRADENGWALSLASMDEMGRVGNIEQALGREVEW 377 >gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8] gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8] Length = 488 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 186/341 (54%), Gaps = 4/341 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P+ + + +G+ T++Q L +DV+ AQTGSGKT++F L A + Sbjct: 68 FPEYLMATIRAQGFPAPTAIQCQSWPMALSGRDVVAIAQTGSGKTISFALP-AMLHINAQ 126 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 SP P+AL +APTRELAVQ+ +E + + + GG + RDLQ G Sbjct: 127 PLLSPGDGPIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVE 186 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V+ TPGRL D + N+ + +V+DEAD MLD+GF I I+ R+ LMFS Sbjct: 187 VVIATPGRLIDMLETGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFS 246 Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT + LA ++ KD ++VNI S E + +I + + ++ N ++ L ++ Sbjct: 247 ATWPKDVQKLANDFLKDFIQVNIGSMELAANHNITQITEVCSDFEKRNKLIKHLDQISSE 306 Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 NA ++F T+ T+ L + + +A+ G+ Q+ER L + GR+ + IATDV Sbjct: 307 NAKVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDV 366 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 A+RG+D+ D+ VI+ + +N E+ +HR GRTGRAG KG + Sbjct: 367 ASRGLDVKDIGYVINYDFPNNCEDYIHRIGRTGRAGAKGTA 407 >gi|302408591|ref|XP_003002130.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102] gi|261359051|gb|EEY21479.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102] Length = 401 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 46 GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRESQAL 99 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 100 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 159 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 160 IRRRDLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 219 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V D + + + ++ A++FC+TR V Sbjct: 220 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 279 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ G++ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 280 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 339 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 340 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 376 >gi|239929077|ref|ZP_04686030.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 428 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 120/324 (37%), Positives = 175/324 (54%), Gaps = 10/324 (3%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELA 87 L DV+ A+TG+GKT+ FGL L + D R P AP AL + PTREL Sbjct: 3 LSGTDVIGQAKTGTGKTLGFGLPLLERVTVPVDVEAGRAKPEDLTDAPQALVVVPTRELC 62 Query: 88 VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS 147 QV +L V V GG + + L+ G +VVGTPGRL D K LN++ Sbjct: 63 TQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLA 122 Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRV 207 H+KA+VLDEADEMLDLGF D+E I++ P +R+ ++FSAT+ A+ LA+ Y + Sbjct: 123 HVKALVLDEADEMLDLGFLPDVEKIINLLPVRRQTMLFSATMPGAVIGLARRYMSQPTHI 182 Query: 208 NIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264 + + + + + V + D+ + IL+ G A+VFC T+ + + L Sbjct: 183 RATAPDDEGATVANTKQFVYRAHNMDKPEMVARILQAEGRGLAMVFCRTKRTAADLADQL 242 Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324 + F A+ G+L Q R AL+ R+G+ V + TDVAARGID+ + VI+ + Sbjct: 243 KQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEE 302 Query: 325 PENLLHRSGRTGRAGRKGMSVFVI 348 + LHR GRTGRAG KG ++ ++ Sbjct: 303 EKTYLHRIGRTGRAGAKGTAITLV 326 >gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis] Length = 644 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 188/340 (55%), Gaps = 10/340 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ RFS Sbjct: 223 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 282 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GGVS + R+++ G ++V GT Sbjct: 283 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREIERGCNVVCGT 342 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + +S L+ +VLDEAD MLD+GF D+ ++ S S + R+ LMFS Sbjct: 343 PGRLLDMIGRGK-VGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 401 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I +A ++ K D + + + SD++ + V + ++++L+ G + Sbjct: 402 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGTE 461 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ G+ Q+ER AL R G+ V +AT VAA Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 521 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+PD++ V++ +L +N + +HR GRTGR G G +V Sbjct: 522 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 561 >gi|148255365|ref|YP_001239950.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1] gi|146407538|gb|ABQ36044.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1] Length = 478 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 182/338 (53%), Gaps = 6/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +QE + L +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTILEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + A + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDTKLTRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +V+DEAD MLD+GF DIE I P R+ L F+AT+ P I Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILR-YHGAKNAIVF 250 + + + + +V ++ + V + + +LR KNAI+F Sbjct: 192 RRVTETFLHNPQKVEVSRPATTAVTVTQLQVPGGREAHQKREVLRKLLREAKDLKNAIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ K L +H F V AL G++ Q R AL R G + +A+DVAARG+D+ Sbjct: 252 CNRKRDVAILHKSLQKHGFSVCALHGDMDQSARMAALDQFRKGELPLLVASDVAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P++ V + ++ + ++ +HR GRTGRAGR G ++ ++ Sbjct: 312 PEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIV 349 >gi|51473847|ref|YP_067604.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington] gi|51460159|gb|AAU04122.1| probable ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington] Length = 407 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 196/355 (55%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 1 MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLID 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 60 AFIK--------NKTTALILVPTRELATQIHSTLNKVTIAYKINSAVLIGGEPMFKQFMQ 111 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ +H+ + L I H+ +VLDE D MLD+G ++ +E I P+KR Sbjct: 112 LKKNPKVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEDINKFLPEKR 171 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I +++ Y + VR+ + + N+ ++I + V+ ++ + + L Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSELTKQLG 231 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + + I+F T+ S + K+L + A+ G+LSQ +R+ + R R+ +A Sbjct: 232 -NRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRARVILSFRKLNHRIMVA 290 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVR 345 >gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341] gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341] gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3894-4] Length = 464 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51] gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51] Length = 464 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|260812834|ref|XP_002601125.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae] gi|229286416|gb|EEN57137.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae] Length = 370 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 177/314 (56%), Gaps = 9/314 (2%) Query: 41 LVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWL 97 + AQTGSGKT AF L + + ++ E FS P A+ +APTRELA+Q+ E Sbjct: 1 MACAQTGSGKTAAFLLPVLTGMMKEGLAGSSFSNIQEPQAICVAPTRELAIQIFSEARKF 60 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 T + + GGVSV + +Q G H++V TPGRL D I ++I LK ++LDEA Sbjct: 61 SYGTMLRPCIAYGGVSVMHHKSQIQRGCHLLVATPGRLLDFIDKGVISIKKLKYLILDEA 120 Query: 158 DEMLDLGFRDDIEFILDSS----PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 D MLD+GF +I +++++ P K R+ LMFSAT I LA+++ +D + + I Sbjct: 121 DRMLDMGFEPEIRRLVETASWGMPAKGERQTLMFSATFPEEIQKLAQDFLEDYIFLTIGR 180 Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271 ++D++ + + D+ + +IL G + +VF T+ + L++ F Sbjct: 181 VGGANTDVEQTVMESSQYDKREKLTDILGNLGQERVLVFVETKRNADFLASYLSQSGFPT 240 Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331 ++ G+ Q+ER AL R GRA V +AT VAARG+D+P + +V++ +L S+ + +HR Sbjct: 241 TSIHGDRLQKEREEALMDFRTGRAPVLVATSVAARGLDIPKVMVVVNYDLPSSIDEYVHR 300 Query: 332 SGRTGRAGRKGMSV 345 GRTGR G G ++ Sbjct: 301 IGRTGRVGNTGKAI 314 >gi|226501258|ref|NP_001151064.1| LOC100284697 [Zea mays] gi|194690824|gb|ACF79496.1| unknown [Zea mays] gi|195644024|gb|ACG41480.1| eukaryotic initiation factor 4A [Zea mays] Length = 410 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 192/355 (54%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 56 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 109 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 110 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 169 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 170 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 229 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V + D + + + ++ +++F +TR V Sbjct: 230 KFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 289 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 290 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 349 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV+V PA Sbjct: 350 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTVEELPA 404 >gi|318062100|ref|ZP_07980821.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actG] Length = 527 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 173/315 (54%), Gaps = 10/315 (3%) Query: 44 AQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVGRELEW 96 A+TG+GKT+ FGL L + D R +P + AP AL + PTREL QV +L+ Sbjct: 5 AKTGTGKTLGFGLPLLERVTVSADVEAGRATPDKLSEAPQALVVVPTRELCTQVTNDLQT 64 Query: 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156 V V GG + + L+ G +VVGTPGRL D + L++S ++A+VLDE Sbjct: 65 AGKVRDVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRALVLDE 124 Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS---EN 213 ADEMLDLGF D+E I+ P KR+ ++FSAT+ A+ LA+ Y +N S EN Sbjct: 125 ADEMLDLGFLPDVEKIVAMLPVKRQTMLFSATMPGAVVALARRYMSQPTHINATSPDDEN 184 Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273 ++ + D+ + IL+ G ++FC T+ + + ++ L F A Sbjct: 185 ATVANTEQHVFRAHSMDKPEMVARILQAEGRGLVMIFCRTKRTAADISEQLQRRGFAAGA 244 Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333 + G+L Q R AL+ R+G+ V + TDVAARGID+ + VI+ + + + LHR G Sbjct: 245 VHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIG 304 Query: 334 RTGRAGRKGMSVFVI 348 RTGRAGR G +V ++ Sbjct: 305 RTGRAGRSGTAVTLV 319 >gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4] gi|74681080|sp|Q5B5E7|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3 gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4] gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus nidulans FGSC A4] Length = 465 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 113/339 (33%), Positives = 184/339 (54%), Gaps = 7/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L +DV+ A+TGSGKT AF L + L+ Sbjct: 59 EACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTL--- 115 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+ + E L + GV AV +GG+ + + L HI+V TP Sbjct: 116 ---FGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATP 172 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK + +DEAD +LD+ F + ++ I+ P+ R +FSAT+S Sbjct: 173 GRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATMST 232 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + +L + + VRV+++S+ + S + + + ++ +V +L ++AI+F Sbjct: 233 KVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFT 292 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +T R +L F + L G+LSQ R AL R + +ATDVAARG+D+P Sbjct: 293 TTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIP 352 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++V + +L + + +HR GRT RAG+ G+++ + Q Sbjct: 353 SVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQ 391 >gi|294084931|ref|YP_003551691.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664506|gb|ADE39607.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 651 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 183/356 (51%), Gaps = 10/356 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P+ + L+ G V T +Q+ + L D++ AQTG+GKT AF L L + L Sbjct: 23 DLPENMLGTLAREGLVVPTPIQQMSIPLLLLGHDLIGLAQTGTGKTAAFLLPLMTQL--- 79 Query: 66 NDRFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +SP+ P AL +APTRELA Q+ L L A + GG + R L Sbjct: 80 --SYSPSVRSGQPPKALILAPTRELANQISANLSRLSADMNIRHICVFGGARYEGQIRGL 137 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G IVV TPGRL D + + S + +LDEAD MLDLGF ++ I S P R+ Sbjct: 138 KRGVDIVVATPGRLMDLMERGSFDPSGITHWILDEADHMLDLGFYPAMKHISASLPADRQ 197 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 ++FSAT+ P I L + D RV I R L+A +D+ + + ++L + Sbjct: 198 TMLFSATMPPEIEKLGNEFLTDPERVKAPQSGITADKITQRVTLMAEADKRDRLCDVLNH 257 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++F T+ +K + + F V L G++ Q R L+ RDGR + IAT Sbjct: 258 EDTGQCLIFVRTKRRADALSKFMEDRGFAVDTLHGDMRQGLRQKVLRNFRDGRLQGLIAT 317 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356 DVAARGID+ L V++ +L+ PE +HR GRTGRAG G+++ F P R A Sbjct: 318 DVAARGIDIAGLSHVVNFDLTDTPEAYVHRIGRTGRAGLGGLALSFCSPSEEPRLA 373 >gi|301783663|ref|XP_002927245.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Ailuropoda melanoleuca] gi|281343724|gb|EFB19308.1| hypothetical protein PANDA_017010 [Ailuropoda melanoleuca] Length = 820 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|260774368|ref|ZP_05883282.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14] gi|260610495|gb|EEX35700.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14] Length = 433 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 187/342 (54%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65 PQVI E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL E Sbjct: 18 PQVI-EGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ +Q G Sbjct: 77 AEGRKP-NQPRAIIMAPTRELAIQIYNDAESLIATTGIKTALAYGGESYDKQLAKIQEGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 +++GT GR+ D + K N++H++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DVLIGTTGRIIDFYKQKAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S + LA + + V + + + I + + + I+ Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEATQKTGHRIKEELFYPSNEHKMALLQTIIEEEW 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AIVF +T+ + LA +V L+G++ Q++R L+ G + +ATDV Sbjct: 256 PDKAIVFANTKHRCEQVWGSLAADGHRVGLLTGDVPQKKRERILEQFTQGELDILVATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 316 AARGLHIPLVTHVFNYDLPDDSEDYVHRIGRTGRAGESGSSI 357 >gi|255729782|ref|XP_002549816.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240132885|gb|EER32442.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 571 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 122/361 (33%), Positives = 193/361 (53%), Gaps = 29/361 (8%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF----SPASA 74 G+ TS+Q A + L ++DV+ A+TGSGKT++F + L + +L+ ++ + + Sbjct: 177 GFNQPTSIQRASIPLSLIKRDVVGVAETGSGKTLSFLIPLFNYILSIDENYIKYEKSLNM 236 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPG 133 P+ L +APTRELA+Q+ +E E K G VV IGG D+ ++G HI+V TPG Sbjct: 237 PMGLILAPTRELAIQITKEAEKFCKKLGYVVLSIIGGHQYSNTIDDIDKSGVHIIVATPG 296 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--------------- 178 RL D I K +++S +++DEAD M+D+GF D+ I+ P Sbjct: 297 RLVDSIDRKIIDLSKCYYLIMDEADRMIDMGFEKDLNKIMSKLPNSDQLSQTIDGRIFHL 356 Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 KR +MF+ATISP I + KNY D V I +I+ + + + + N Sbjct: 357 DKRSTMMFTATISPPIEKITKNYLIDPGYVYIGGAGEALDNIEQQFEYLPSATSETTKFN 416 Query: 238 -ILRYHG--AKNA-----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 +++Y G KN I+F + + ++ L+ + V + G SQ+ R A+ Sbjct: 417 KLMKYIGNHMKNTRNPLIIIFANFKHVCDSLSQELSSNHLDNVVIHGSKSQEARELAINQ 476 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 R+ + + IATDVAARGID+P++ LVI+ ++ + + +HR GRTGRAG KG S I Sbjct: 477 FRNHESEILIATDVAARGIDIPNVTLVINFQMVNKFDEYIHRIGRTGRAGNKGKSFTFIS 536 Query: 350 Q 350 + Sbjct: 537 E 537 >gi|254515296|ref|ZP_05127357.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3] gi|219677539|gb|EED33904.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3] Length = 428 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 8/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRF 69 ++E G+ + +Q +L L+ D + AQTG+GKT AF + + LL E +RF Sbjct: 58 HGIAEIGFEYCSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAFLITIFDDLLRNPHEGERF 117 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIV 128 P AL IAPTREL +Q+ + L TG+ IGG+ ++ L + +V Sbjct: 118 --LGEPRALVIAPTRELVMQIAADAADLGKYTGLNTCTLIGGMDYQKQLNQLGREVVDLV 175 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFS 186 V TPGRL D + L + ++ +VLDEAD MLD+GF ++ I+ +P K R+ L+FS Sbjct: 176 VATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHKDYRQTLLFS 235 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT + I L++ + DAV V I ++ +D R L + +R +VN+LR A + Sbjct: 236 ATFTQDIINLSEQWTTDAVTVEIEPDHVATDSVDQRIYLASSEERFRILVNLLRSDDATS 295 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF + R V R + L + LSGE++Q +R+ L + G V +ATDVA R Sbjct: 296 VIVFANRRDQVRRLYERLRKASITCGMLSGEIAQAKRTKTLDQFKKGEISVLVATDVAGR 355 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 GI + + V++ L +PE+ +HR GRTGRAG G S+ Sbjct: 356 GIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGTSI 394 >gi|107102390|ref|ZP_01366308.1| hypothetical protein PaerPA_01003452 [Pseudomonas aeruginosa PACS2] gi|296388673|ref|ZP_06878148.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1] Length = 556 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 119/333 (35%), Positives = 193/333 (57%), Gaps = 11/333 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77 GY + +Q + L D++ AQTG+GKT AF L L S R P+ P Sbjct: 25 GYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLS-------RIDPSRREPQM 77 Query: 78 LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 L + PTRELA+QV E Y+K GV V GG + + + L+ GA I+V TPGRL Sbjct: 78 LVLVPTRELALQVATACET-YSKQLPGVGVVAVYGGAPMGPQLKALRQGAQILVATPGRL 136 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 CDH+R ++ ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++FSAT+ +I Sbjct: 137 CDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVLFSATLPASIRG 196 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 +A+ + K V IA++ + + I+ ++V + +I +L I F T+ Sbjct: 197 IAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQFDALIAFVRTKQ 256 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 + + ++L ++ AL+G++ Q +R ++ ++DG + IATDVAARG+D+P + Sbjct: 257 ATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIATDVAARGLDVPRITH 316 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ ++ +PE+ +HR GRTGRAGR+G ++ ++ Sbjct: 317 VLNIDMPYDPESYVHRIGRTGRAGREGRALLLV 349 >gi|46122961|ref|XP_386034.1| hypothetical protein FG05858.1 [Gibberella zeae PH-1] gi|91206664|sp|Q4IAA0|FAL1_GIBZE RecName: Full=ATP-dependent RNA helicase FAL1 Length = 401 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 46 GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 99 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 100 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 159 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 160 IRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 219 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V D + + + ++ A++FC+TR V Sbjct: 220 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 279 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ G++ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 280 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 339 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 340 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVR 376 >gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi DSM 6068] gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068] Length = 598 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 182/335 (54%), Gaps = 5/335 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ Y T++Q + P + +D+ AQTG+GKT AF L L L+ +N R Sbjct: 15 ALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLDRLI-KNPRQGKLR 73 Query: 74 A--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130 P AL ++PTRELA Q+ + Y + + ++ I GGVS + + L G +++ Sbjct: 74 GRLPRALVLSPTRELAGQIHDSVRR-YGRHAMQNSLTIYGGVSQVPQVKGLNAGQDVLIA 132 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRLCD ++ +N+S ++ VLDEAD MLD+GF DI I+ P++++ L+FSAT+ Sbjct: 133 TPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQQKQTLLFSATMP 192 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA D V +NI E I V + + ++L+ A+VF Sbjct: 193 PEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPELLASVLKREEVTRAVVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ L + +V A+ G SQ R L ++G +V +ATDVAARG+D+ Sbjct: 253 VRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQVLVATDVAARGLDV 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ +L PE +HR GRTGRAG+ G+++ Sbjct: 313 TGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAI 347 >gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis VL426] gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis VL426] Length = 464 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865] gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865] Length = 462 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 191/364 (52%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T++Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTTPQPVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ + Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDINE 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|310800687|gb|EFQ35580.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001] Length = 401 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 46 GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 99 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 100 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 159 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 160 IRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 219 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V D + + + ++ A++FC+TR V Sbjct: 220 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 279 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ G++ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 280 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 339 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 340 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 376 >gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans T30-4] gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans T30-4] Length = 411 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 187/340 (55%), Gaps = 19/340 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75 G+ +++Q+ + P L D + AQ+G+GKT F +++ + L E Sbjct: 57 GFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAVSILQKIDINLKETQ-------- 108 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL +APTRELA Q+ + + + V V C+GG +V + R LQ G HIVVGTPGR+ Sbjct: 109 -ALILAPTRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDIRTLQQGVHIVVGTPGRV 167 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D I + L +K VLDEADEML GF+D I + P+K ++ +FSAT+ + Sbjct: 168 GDMINRRALRTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPEKVQVALFSATMPLDVLE 227 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFC 251 + + ++ +R+ + + I + +A+ DR+ + + ++ AI++C Sbjct: 228 VTHRFMREPIRILVKRDELTLEGI--KQFFIAI-DREEWKFDTLCDLYETLTITQAIIYC 284 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR V T+ + F V A+ G++ Q+ER ++ R G +RV I TD+ ARGID+ Sbjct: 285 NTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQ 344 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 + LVI+ +L +N EN +HR GR+GR GRKG+++ + N Sbjct: 345 QVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTHN 384 >gi|156369954|ref|XP_001628238.1| predicted protein [Nematostella vectensis] gi|156215209|gb|EDO36175.1| predicted protein [Nematostella vectensis] Length = 361 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 175/307 (57%), Gaps = 6/307 (1%) Query: 41 LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100 + AQTGSGKT A+ L + ++L+ + +P +PLAL +APTRELA Q+ E Sbjct: 1 MACAQTGSGKTAAYMLPVLTSLIKQGLN-APPRSPLALCVAPTRELAKQIYIEARKFSDH 59 Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 T + V VC GGVSV + L+ G H +VGTPGRL D + + + + ++ ++LDEAD M Sbjct: 60 TPIKVCVCYGGVSVPYQASQLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRM 119 Query: 161 LDLGFRDDIEFILDSS----PKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQ 215 LDLGF DI +++ S + R+ LMFSAT I LA ++ K D + + + Sbjct: 120 LDLGFGPDIHKLIEESNMTAKESRQTLMFSATFPDEIQHLAGSFLKPDYLFLAVGRVGGT 179 Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275 + DI + V S++ + + IL G +VF + L+++ F ++S Sbjct: 180 NLDITQHVITVNGSEKRDKLHEILSATGTDRTLVFVELKRVADFLAAWLSQNNFPTTSIS 239 Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335 + Q ER AL+ RDGRA + +AT VAARG+D+P+++ VI+ +L + E +HR GRT Sbjct: 240 SDRCQSEREAALRDFRDGRANILVATSVAARGLDIPNVKHVINYDLPQDIEEYVHRVGRT 299 Query: 336 GRAGRKG 342 GR G +G Sbjct: 300 GRIGNEG 306 >gi|324513918|gb|ADY45697.1| ATP-dependent RNA helicase [Ascaris suum] Length = 435 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 174/305 (57%), Gaps = 7/305 (2%) Query: 47 GSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106 GSGKT AF L + LL + AL + PTRELA Q+ + + L A G++VA Sbjct: 37 GSGKTAAFALPILQALLDTPQKL------FALILTPTRELAFQIAEQFDALGASIGLLVA 90 Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGF 165 V +GGV + + L H++V TPGRL DH+ KG N+ LK +V+DEAD +L++ F Sbjct: 91 VIVGGVDMVTQALALAKRPHVIVATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDF 150 Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225 +++ IL PK+RR ++SAT++ + L + +D RV + S+ + + + Sbjct: 151 EVELDKILKVLPKERRTYLYSATMTKKVAKLERASLRDPARVEVCSKYKTVDKLKQHYIF 210 Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285 + ++ +V IL + AIVFC+T AS + +L + F V L G++SQ +R Sbjct: 211 IPQKYKEAYLVYILNEMAGQTAIVFCATCASTMKTALMLRQLGFGAVPLHGQMSQAKRLG 270 Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +L + + + TDVA+RG+D+P+++ V++ ++ S ++ +HR GRT RAGR G+S+ Sbjct: 271 SLNKFKSKVRPILVCTDVASRGLDIPNVDAVLNYDVPSQSKDYVHRVGRTARAGRSGVSI 330 Query: 346 FVIPQ 350 + Q Sbjct: 331 TFVTQ 335 >gi|322698074|gb|EFY89847.1| eukaryotic initiation factor 4A-12 [Metarhizium acridum CQMa 102] Length = 402 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 47 GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 100 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 101 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 160 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 161 IRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 220 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V D + + + ++ A++FC+TR V Sbjct: 221 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 280 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ G++ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 281 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 340 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 341 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVR 377 >gi|160876048|ref|YP_001555364.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|160861570|gb|ABX50104.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|315268244|gb|ADT95097.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 427 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E YV+ TSVQ A + L +DVL A TGSGKT AF + L L+ + Sbjct: 24 LTELAYVSPTSVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAY 83 Query: 75 PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA QV L K +V A GGVSV+ + + L+ GA ++V Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRAGADVLVA 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ + A+VLDEAD ML LGF +++ +LD+ P K++ L+FSAT Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L D + SE Q S I R + V + + ++++ H A++F Sbjct: 202 EEVRELTAKLLNDPLEYQFQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 S + + + + L++ G+ +Q R+ L ++G V IATD+AARGID+ Sbjct: 260 VSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L +VI+ +L +P + +HR GR+GRAG G++V +I Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357 >gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 460 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 121/364 (33%), Positives = 189/364 (51%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T +Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTAPQTVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ V++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPVQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|322833775|ref|YP_004213802.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] gi|321168976|gb|ADW74675.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] Length = 470 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 192/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q + L +D++ SAQTG+GKT F L L + L N +F Sbjct: 15 AVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLNMLSHTNAQFKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G ++ + V GGVS++ + L+ G +++ TPG Sbjct: 75 PVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQMMKLRGGVDVLIATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRLLAKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V +A N + I+ V + + ++ K +VF T Sbjct: 195 KGLASKLLTNPASVEVARRNTASAQIEQSVHFVDKKRKRELLSQMIGEGDWKQVLVFNRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ L Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGSVRVLVATDIAARGLDIDML 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G ++ ++ + R ERL + + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAEATGEAISLVCVDEHKLLRDIERLLKREIPRIALE 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|118092589|ref|XP_421574.2| PREDICTED: similar to Gu protein [Gallus gallus] Length = 690 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 201/360 (55%), Gaps = 21/360 (5%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L VQ P KD++ A+TG+GKT +F + L L + + + Sbjct: 140 LKARGVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEKLQSVSQDEKRGRS 199 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPG 133 P L + PTRELA+QV ++ + L K V C G + ++ + DL +NG I+VGTPG Sbjct: 200 PKVLVLVPTRELAIQVAKDFKNLTRKLSVA---CFYGGTPYKAQFDLLKNGIDILVGTPG 256 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-----RRMLMFSAT 188 R+ DHI+ L++S++K VVLDE D MLD+GF + +E IL + KK + L+FSAT Sbjct: 257 RIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGSENSPQTLLFSAT 316 Query: 189 ISPAITTLAKNYQK-DAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILR-YHGA 244 + +AK Y K + +V++ + Q + +++ A+ S R + +I++ Y G+ Sbjct: 317 CPRWVYDVAKKYMKGEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRAEVLGDIIQVYSGS 376 Query: 245 KN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVFC T+ + L L Q +L G++ Q++R L+ R+G V IAT+ Sbjct: 377 HGRTIVFCETKKEANEL--ALNSALKQEAQSLHGDIPQKQREVTLKGFRNGVFEVLIATN 434 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+P+++LVI + ++ +HRSGRTGRAGR G+ + QR+ E L ++ Sbjct: 435 VAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICF----YQRKEEDLLKQ 490 >gi|84515959|ref|ZP_01003320.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53] gi|84510401|gb|EAQ06857.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53] Length = 447 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 120/346 (34%), Positives = 187/346 (54%), Gaps = 3/346 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P++I L E+G + T +Q + + +DV+ AQTG+GKT AFGL + L+ Sbjct: 11 PRLIA-VLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMIHALMKAGV 69 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + +P A L +APTRELA Q+ L + + VA+ +GG + + + L G + Sbjct: 70 KPNP-KAVRGLVLAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGITAQTKRLAGGVDL 128 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + + + + +VLDEAD+MLD+GF + I K R+ +MFSA Sbjct: 129 LVATPGRLIDLLDRRAVRLDETVYLVLDEADQMLDMGFIHALRRIAPLLAKDRQTMMFSA 188 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ ++ LA + DAVRV + + I VA + + + +V++L H + A Sbjct: 189 TMPKLMSELADAFLTDAVRVQVNPPGQAVKKIAQSVHFVAQAAKTDLLVDLLDKHRDELA 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ + K L F ++ G SQ +R A++ + G+ RV +ATDVAARG Sbjct: 249 LVFGRTKHGCEKLYKTLEAKGFAAASIHGNKSQGQRERAIEAFKAGKVRVLVATDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352 ID+P + V + +L + EN +HR GRT RAG G ++ V P M Sbjct: 309 IDIPGVRHVYNYDLPNVAENYVHRIGRTARAGADGSAIALVAPDEM 354 >gi|84494425|ref|ZP_00993544.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649] gi|84383918|gb|EAP99798.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649] Length = 774 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 132/357 (36%), Positives = 189/357 (52%), Gaps = 6/357 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 E L+ G + +QEA + L +DVL QTGSGKT+AFGL T L + R +P Sbjct: 336 ERLARDGITSPFPIQEATIPDALAGRDVLGRGQTGSGKTLAFGLPTI-TRLVDGTRPAPK 394 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTRELA+QV LE L TG+ + GG+S + R L++G I+V TP Sbjct: 395 R-PRALIMVPTRELAMQVSDALEPLVHVTGLRHKLVAGGLSYEPQVRALKSGIDILVATP 453 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I + ++ V+LDEAD M D+GF ++ I+D P + L+FSAT+ Sbjct: 454 GRLNDLIERGACELDDVQVVILDEADHMADMGFMPEVTAIMDKIPAGGQRLLFSATLDKG 513 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I L Y D V + + + + +L+ +++ + G +VF Sbjct: 514 IDKLVDRYLSDPVTHSTEDAQASVTTMSHHIMLIDPNNKKQLTAELAARDG--RTVVFVR 571 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R + L E A+ G LSQ R+ AL RDG V +ATDVAARGI + D Sbjct: 572 TQLGADRIARELREKGVLAAAIHGGLSQNLRNRALGAFRDGSLPVLVATDVAARGIHVDD 631 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368 + LV+ A+ ++ ++ LHR+GRT RAG KG V F +P + +R ERL A + V Sbjct: 632 IGLVLQADPPADHKDYLHRAGRTARAGEKGTVVTFALP-HQKRTMERLAEAAGLDVA 687 >gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis Nb-231] gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis Nb-231] Length = 429 Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 197/373 (52%), Gaps = 9/373 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A+ GY T +Q + + +D+L +AQTG+GKT AF L + L A R Sbjct: 12 ILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPILQRLSAVPTRHR 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AP AL + PTRELA QV + + GGV ++ + L++G +VV Sbjct: 72 ---APRALVLTPTRELAAQVRESVRSYGRHLPLRSTAVFGGVGINPQISALRSGVDVVVA 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH++ + + +S ++ VLDEAD MLD+GF DI ++ + P+KR+ L+FSAT S Sbjct: 129 TPGRLLDHLQQRTVELSRVEIFVLDEADRMLDMGFIRDIRKVMAALPQKRQNLLFSATFS 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA D V+ A N I ++ VA S + + +++ +VF Sbjct: 189 GEIRKLADQILHDPASVDTAPRNSVAELITHKVHPVAQSRKRALLAHLIGNGKWSQVLVF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L A+ SQ R+ ALQ + GR RV +ATD+AARG+D+ Sbjct: 249 TRTKHGANRLATQLDRDGLNATAIHSSKSQSARTKALQDFKRGRVRVLVATDIAARGLDI 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLF-REANVS 366 L V++ ELS+ E+ +HR GRTGRAG +G +V ++ + ++ ERL R + Sbjct: 309 EALPHVVNYELSNIAEDYVHRIGRTGRAGSQGQAVSLVSADERKHLANIERLLGRRLPCT 368 Query: 367 VV--WEPAPSVEA 377 V+ +EP + EA Sbjct: 369 VIEGFEPVAANEA 381 >gi|302801091|ref|XP_002982302.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii] gi|300149894|gb|EFJ16547.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii] Length = 412 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 116/328 (35%), Positives = 178/328 (54%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P R DV+ AQ+G+GKT F S +L + D + AL Sbjct: 58 GFEKPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATF----CSGILQQLD--GHLNECQAL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V C+GG V +++R Q+G H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQRICQSGVHVVVGTPGRVYDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L H++ VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGLFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + + ++ +++FC+TR V Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNTRRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T L V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L + PEN LHR GR+GR GRKG+++ Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAI 379 >gi|261202786|ref|XP_002628607.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis SLH14081] gi|225556973|gb|EEH05260.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus G186AR] gi|239590704|gb|EEQ73285.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis SLH14081] gi|239612419|gb|EEQ89406.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis ER-3] gi|240277518|gb|EER41026.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H143] gi|325093598|gb|EGC46908.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H88] gi|327355221|gb|EGE84078.1| ATP-dependent RNA helicase FAL1 [Ajellomyces dermatitidis ATCC 18188] Length = 399 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 189/340 (55%), Gaps = 14/340 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T+L E Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG +V + R L +G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 LVI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374 >gi|167036018|ref|YP_001671249.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida GB-1] gi|166862506|gb|ABZ00914.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1] Length = 626 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 191/342 (55%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + +YA+ +V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G ++++H++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT LA + R+ + N I+ R + S + + +++ + Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITQGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H A+ G SQ R+ AL + RV +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMV 353 >gi|117919870|ref|YP_869062.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3] gi|117612202|gb|ABK47656.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3] Length = 427 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 194/377 (51%), Gaps = 4/377 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LSE Y T +Q A + L +DVL A TGSGKT AF + L L A Sbjct: 24 LSELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAEKSAGQ 83 Query: 75 PLALAIAPTRELAVQVGRE-LEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV L + G + + GGVSV+ + + L+ GA ++V TP Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATP 143 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + L ++ + A+VLDEAD ML LGF D++ +L++ P K++ L++SAT Sbjct: 144 GRLLDLLASNALKLNRVSALVLDEADRMLSLGFTDELNQVLEALPSKKQTLLYSATFPEE 203 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L + ++ SE Q S I+ R + V + + ++++ H A++F S Sbjct: 204 VRALTAKLLHQPLEYHLQSE--QESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVS 261 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + + + + L++ G+ +Q R+ L + G V IATD+AARGID+ Sbjct: 262 AKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGEISVLIATDIAARGIDIDK 321 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L +VI+ +L +P + +HR GR+GRAG G++V +I + ++ + +V E Sbjct: 322 LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLVREQI 381 Query: 373 PSVEAIRERDAQRILQD 389 P EA E + + Q+ Sbjct: 382 PGFEANAEMPLEVLAQE 398 >gi|320330567|gb|EFW86546.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330873565|gb|EGH07714.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. glycinea str. race 4] Length = 442 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVEVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|315079878|gb|EFT51854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1] Length = 491 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 195/366 (53%), Gaps = 11/366 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 26 GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 86 PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ A+ L + Y + V + + + + + A + ++ + I Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + +VF T+ SR + L E AL G L+Q R+ L +DG V +ATD Sbjct: 260 G--HTVVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+ Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377 Query: 363 ANVSVV 368 A V V Sbjct: 378 AGVKPV 383 >gi|220933542|ref|YP_002512441.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994852|gb|ACL71454.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] Length = 432 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 126/394 (31%), Positives = 213/394 (54%), Gaps = 23/394 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + + + + G+ T +Q L L+ DV AQTG+GKT AF +A + LL + Sbjct: 21 DLPDSVRQGIEDAGFSRCTPIQALALPIALKGHDVAGQAQTGTGKTAAFLIAAFNRLLRD 80 Query: 66 NDRFSPASAPL------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 PA A AL +APTRELA+Q+ ++ L A TG+ + + GG ++R+ Sbjct: 81 -----PAPAERKQNQIRALILAPTRELAIQIHKDAVTLGAHTGLKLGLAYGGTDYDKQRQ 135 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSP 177 L +G I++GTPGR+ D+ + K ++ ++ +VLDEAD M DLGF DI F+L + P Sbjct: 136 QLVDGVDILIGTPGRIIDYFKQKVFDMRVVQVMVLDEADRMFDLGFIKDIRFLLRRMTPP 195 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 +R+ ++FSAT+S + LA + + +V E + A ++ ++ Sbjct: 196 TERQSMLFSATLSHRVMELAYEHMNNPEKVQTRDEQVTAQRVRQVVYYPANPEKIPLLLG 255 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +++ G ++VF +T+ + L + +V LSG++ QQ+R L+ + +V Sbjct: 256 LMKRIGPSRSMVFVNTKHMADKLEAWLKGNDIKVAVLSGDVPQQKRQRLLKQFENDEFQV 315 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIP 349 +ATDVAARG+ +PD+ V + +L + E+ +HR GRTGRAG +G +V F +P Sbjct: 316 LVATDVAARGLHIPDVSHVFNFDLPQSGEDYVHRIGRTGRAGAEGDAVSFACEDSAFYLP 375 Query: 350 QNMQRRAERLFREA-NVSVVWEPAPSVE-AIRER 381 + Q ++ A + ++ +PAP + IRER Sbjct: 376 EIEQYIGFKIEAGAIDPELLVKPAPPAKREIRER 409 >gi|332641920|gb|AEE75441.1| translational initiation factor 4A-1 [Arabidopsis thaliana] Length = 407 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 193/358 (53%), Gaps = 9/358 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 RG+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D FS A Sbjct: 52 RGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-A 105 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 106 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 165 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 ++ + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + Sbjct: 166 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 225 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256 + + VR+ + + I V V + + + ++ +++F +TR Sbjct: 226 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRK 285 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 V T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LV Sbjct: 286 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 345 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 I+ +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV V E PS Sbjct: 346 INFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 401 >gi|325273080|ref|ZP_08139385.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp. TJI-51] gi|324101781|gb|EGB99322.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp. TJI-51] Length = 630 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 191/342 (55%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + +YA+ +V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G ++++H++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT LA + R+ + N I+ R + S + + +++ + Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H A+ G SQ R+ AL + RV +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMV 353 >gi|219119937|ref|XP_002180719.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408192|gb|EEC48127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 822 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 133/408 (32%), Positives = 196/408 (48%), Gaps = 54/408 (13%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAE 65 Q + + LSE+G + T VQ P + +DV+ ++TG+GKT+AFGL + T E Sbjct: 146 QRVIDVLSEKGITSFTPVQAEAFGPVMARRDVIGRSRTGTGKTLAFGLPALTRLVTFTTE 205 Query: 66 NDR------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 N + + + PTRELA QV EL + G+ V V GGVS + R Sbjct: 206 NGKRDARGVMKSGRKVSMIILCPTRELARQVQEELSQVARPLGLFVEVFHGGVSYDPQSR 265 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL----DS 175 L+ G ++VGTPGR+ DHI L++S VLDEADEML++GF DD+E +L + Sbjct: 266 ALRQGVDVIVGTPGRVIDHIERGTLDLSECDIAVLDEADEMLNMGFADDVEVVLKNVGSN 325 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVN--------------------------- 208 +P+K + L+FSAT + + + YQKD + ++ Sbjct: 326 NPQKTQCLLFSATTPSWVKEIGRQYQKDVLAIDSTADKGGARVAETVRHLAVQLAPGADA 385 Query: 209 --------IASENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 IA E + +DI + A R N ++ IVF T+ Sbjct: 386 KRSVLEDIIAVEISKDADIGKIELEIANPIAAAAHKRKNKGNQAMQQKIFGKTIVFTETK 445 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 AL G++ Q++R + L R G V +ATDVAARGID+ D++ Sbjct: 446 READELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRSGAFNVLVATDVAARGIDIQDVD 505 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 LVI + + + +HRSGRTGRAG+KG+SV + Q R R+ R+ Sbjct: 506 LVIQFDPPRDVDTYVHRSGRTGRAGKKGVSVLLFNQRQSRDIVRIERD 553 >gi|41054055|ref|NP_956176.1| probable ATP-dependent RNA helicase DDX23 [Danio rerio] gi|38014376|gb|AAH60524.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Danio rerio] Length = 807 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 117/369 (31%), Positives = 193/369 (52%), Gaps = 29/369 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY + T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 384 SLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 443 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 444 PKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 503 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 504 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQK 563 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 564 PDTDDAEDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 623 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + +L++ ++ ++ +L I+F + + K L + + L G Sbjct: 624 ERVEQKVILMSEGEKRKKLLEVLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 683 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 684 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTG 743 Query: 337 RAGRKGMSV 345 RAG+ G+++ Sbjct: 744 RAGKSGVAM 752 >gi|148652579|ref|YP_001279672.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571663|gb|ABQ93722.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1] Length = 383 Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 121/348 (34%), Positives = 193/348 (55%), Gaps = 9/348 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---ND 67 I ++++ G+ LT +Q IL L +D + AQTG+GKT F + + LL +D Sbjct: 16 ILRSVNDLGFTELTGIQAQILPHTLAGQDAIGQAQTGTGKTATFLITIIEALLKRPFADD 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAH 126 P AL +APTRELA Q+ + L T + +GG+ ++ L ++ Sbjct: 76 EMRYIGEPRALILAPTRELANQIYDDAIALTKHTSLHSVCVMGGIDYDKQIAALDKSYTD 135 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184 I++ TPGRL D I + + ++A VLDEAD MLD+GF DI+ ++ P R+ L+ Sbjct: 136 ILIATPGRLIDLIYKGHVFLDRIEAFVLDEADRMLDMGFIPDIKRLMRYMPPNTDRQSLL 195 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT + + LA + + V V I E++ ++ L+ +D+ A++ IL Sbjct: 196 FSATFNQDVMNLAYQWLMNPVFVEIEPEHKTSDLVEQHFYLLTEADKHQALIQILAQPET 255 Query: 245 KNAIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K IVF + + V R +TK+ A+H VV LSG++ Q +R L ++G A+V +ATDV Sbjct: 256 KKVIVFANRKDQVKRLYTKLSADH--NVVMLSGDVDQAKRERYLDKFKNGNAKVLVATDV 313 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 A RGI + D+ V++ L P++ +HR GRTGRAG+KG+S+ + ++ Sbjct: 314 AGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQKGISISFVSED 361 >gi|313676359|ref|YP_004054355.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM 4126] gi|312943057|gb|ADR22247.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM 4126] Length = 413 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 112/340 (32%), Positives = 183/340 (53%), Gaps = 3/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I AL E Y TS+QE + L++ D++ SAQTG+GKT AF + + L + Sbjct: 7 NIIAPILRALKEENYSEPTSIQEQAIPLLLQKNDIMASAQTGTGKTAAFAIPILQHLEKD 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N S + +L + PTRELA+Q+G T + V GGV+ +++ ++NG Sbjct: 67 N---SNSKKIKSLILTPTRELAIQIGESFTTYGKYTSIRNTVIFGGVNQNKQTAAIRNGV 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL D + +++ ++ VLDEAD MLD+GF DI+ ++ P KR+ L F Sbjct: 124 DVLIATPGRLLDLMNQGFISLKDIQYFVLDEADRMLDMGFIHDIKKVIAVLPSKRQSLFF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L++ + ++ + + I S + + +++IL+ Sbjct: 184 SATMPDTIVELSRKILINPKKIAVTPVSSTAETIQQYLYYTNKSTKKDLLLHILKDSKMD 243 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ R K L + A+ G+ +Q +R AL +D RV +ATD+AA Sbjct: 244 QVLLFDRTKHGADRIVKELKKKNISAAAIHGDKAQNQRQKALTQFKDKEIRVLVATDIAA 303 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ L+ VI+ ++ + E +HR GR+GRAG G+S+ Sbjct: 304 RGIDIDKLQYVINFDIPNVAETYVHRIGRSGRAGEAGVSI 343 >gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes] Length = 715 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTRELA QV ++ + K + VA GG + + Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DHI+ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 298 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 416 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 515 >gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93] gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93] Length = 464 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|188534378|ref|YP_001908175.1| ATP-dependent RNA helicase RhlE [Erwinia tasmaniensis Et1/99] gi|188029420|emb|CAO97297.1| Putative ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99] Length = 468 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 197/371 (53%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q + L +D++ SAQTG+GKT F L L L + N Sbjct: 15 AVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G ++ + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D L++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNALDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCS 252 TLA+ + +V +A N + LV R ++++L G + +VF Sbjct: 195 KTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD-KKRKRELLSLLIGRGNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL ++G+ RV +ATD+AARGID+ + Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKEGKIRVLVATDIAARGIDIEE 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV 368 L V++ EL + E+ +HR GRTGRA G + V V + R ERL RE V Sbjct: 314 LPHVVNYELPNVSEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERLLKREIPRMAV 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 EGFEPDPSIKA 384 >gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1] gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1] Length = 555 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 184/348 (52%), Gaps = 18/348 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL------ASTLLAEND 67 AL E G ++QE L L D++ A+TG GKT FG+ L +T A D Sbjct: 52 ALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALD 111 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELE----WLYA-KTGVVVAVCIGGVSVHRERRDLQ 122 P AL I PTREL +QV ++LE +L K + V GG + LQ Sbjct: 112 -----GTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQ 166 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 GA +VVGTPGRL D L + ++ +VLDEADEMLDLGF DIE IL P KR+ Sbjct: 167 KGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPDKRQT 226 Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++FSAT+ I TLA+ + Q +R A ++ H D+ + +L+ Sbjct: 227 MLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYRAHALDKAEMVARVLQ 286 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G ++F T+ + + LAE F V ++ G+L+Q R AL+ R G+ V +A Sbjct: 287 AEGRGATMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLVA 346 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ D+ VI+ + + + +HR GRTGRAGR G++V ++ Sbjct: 347 TDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLV 394 >gi|300783470|ref|YP_003763761.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] gi|299792984|gb|ADJ43359.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] Length = 500 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 184/360 (51%), Gaps = 3/360 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + AL+ +G +Q A L L +DVL +TGSGKT F L L + L A Sbjct: 8 GLPTPLVAALATQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPLLARLAAG 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P P AL +APTRELA Q+ + L G+ GGVS + + L++G Sbjct: 68 PTRRKPGR-PRALILAPTRELATQIEASILPLAKPLGLKTTTIFGGVSANPQITRLRDGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL DH+R + + ++ VLDEAD M DLGF ++ I+D +P + + ++F Sbjct: 127 DIVVACPGRLADHMRSGHVKLDAIEITVLDEADHMADLGFLPEVRRIMDQTPSRGQRMLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L K + D + ++ S S +++ + + + R +V++ G Sbjct: 187 SATLDNGVDVLVKRFMNDPITHSVDSAQSPVSTMEHHVLHLEETHRLPVLVDLTAAPG-- 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T++ T+ L V L G L Q R+ L+ G A+ +ATD+AA Sbjct: 245 RTLVFTRTKSRAKALTRKLVASGVPAVELHGNLGQNARTRNLEAFSSGTAKTLVATDIAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LVIHA+ + LHRSGRT RAG G V ++ R L R+A + Sbjct: 305 RGIHVDDVRLVIHADPPVEHKAYLHRSGRTARAGASGTVVTLMTDAQVRDVRDLTRKAGI 364 >gi|224089124|ref|XP_002308641.1| predicted protein [Populus trichocarpa] gi|222854617|gb|EEE92164.1| predicted protein [Populus trichocarpa] Length = 440 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 114/348 (32%), Positives = 192/348 (55%), Gaps = 7/348 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + + EA G+ N T +Q + L KD++ AQTGSGKT AF L LL Sbjct: 17 ICEQLVEACERLGWKNPTKIQVEAIPHALEGKDLIALAQTGSGKTAAFALPTLQALL--- 73 Query: 67 DRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + S S P+ A ++PTRELA+Q+ + E L + G+ AV +GGV + + L Sbjct: 74 -QASVTSVPVFYACVLSPTRELAIQIAEQFEALGSDIGLRCAVLVGGVDMGLQTIALAKR 132 Query: 125 AHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 HIVVGTPGRL DH+ KG ++ LK ++LDEAD +L+ F ++ IL + R+ Sbjct: 133 PHIVVGTPGRLLDHLSNTKGFSLRTLKYLILDEADRLLNEEFEKSLDEILTVISRDRKTY 192 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT++ + L + ++ V++ +AS+ + + + ++ +V+ L Sbjct: 193 LFSATMTKKVRKLQRACLRNPVKIEVASKYSVVETLRQQLLFCPAKYKECYLVHALTLKS 252 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF T + VL + + ++G +SQ +R AL + G + I TDV Sbjct: 253 GASTMVFTRTCDATHFLALVLRNLGLRAIPINGHMSQSKRLGALNKFKAGECNILICTDV 312 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 A+RG+D+P +++V++ ++ +N ++ +HR GRT RAGR G+++ ++ QN Sbjct: 313 ASRGLDIPSVDMVVNYDIPTNSKDYIHRVGRTARAGRSGLAISLVNQN 360 >gi|213410545|ref|XP_002176042.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus yFS275] gi|212004089|gb|EEB09749.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus yFS275] Length = 461 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 112/341 (32%), Positives = 185/341 (54%), Gaps = 7/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EA + + +++Q+ + L+++D++ AQTGSGKT AF + + L F Sbjct: 53 ICEACEKLNFKAPSAIQKEAIPAALKQQDIIGLAQTGSGKTAAFAIPVIQALWENPCPF- 111 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + +APTRELA Q+ + E L GV V +GG+ + + + HI+V Sbjct: 112 -----FGVVLAPTRELAYQISEQFEALGGAMGVKSVVIVGGMDMVTQAVAISKKPHILVC 166 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ KG ++ +LK +V+DEAD +LD+ F I+ IL PK+RR +FSAT+ Sbjct: 167 TPGRLMDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPIIDKILKVIPKERRTFLFSATM 226 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + + L + + VR+ ++S+ + + + +D +V I+ ++ I+ Sbjct: 227 TSKVEKLQRASLHNPVRIAVSSKFSTVDTLLQKYLFFPFKHKDTYLVYIVNEMAGQSMII 286 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T R +L F + L G+LSQ R AL + G + +ATDVAARG+D Sbjct: 287 FTRTVNDTQRVAILLRSLGFSAIPLHGQLSQSSRLGALNKFKSGARSILVATDVAARGLD 346 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +P ++ VI+ ++ ++ + +HR GRT RAGR G S+ ++ Q Sbjct: 347 IPLVDAVINYDIPTDSKAYIHRVGRTARAGRSGKSIALVTQ 387 >gi|153000172|ref|YP_001365853.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|160874799|ref|YP_001554115.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS195] gi|151364790|gb|ABS07790.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|160860321|gb|ABX48855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195] gi|315267037|gb|ADT93890.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678] Length = 451 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 189/346 (54%), Gaps = 5/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ Q + +++ G T++QE L L KD++ S++TGSGKT+AF L +++ Sbjct: 7 SLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P L + PTRELA QV +L L A T +GG + + + + L Sbjct: 67 --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184 H +V TPGR+ DH+ K L ++ L+ +VLDEAD MLDLGF ++ I D++ KRR LM Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLM 184 Query: 185 FSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYH 242 FSAT+ I +A K+ V I + + +H+DI R L D A++ +L+ Sbjct: 185 FSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARLLKDE 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K I+F +TR R L F ALSG+L Q R+ + G+ +V + TD Sbjct: 245 THKQVIIFTATRPDTERLAAKLTAQGFATAALSGDLKQAARNQIMDQFARGQQQVLVTTD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VA+RG+DL ++ LV++ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 305 VASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|156121051|ref|NP_001095672.1| probable ATP-dependent RNA helicase DDX23 [Bos taurus] gi|151554096|gb|AAI47903.1| DDX23 protein [Bos taurus] gi|296487810|gb|DAA29923.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Bos taurus] Length = 820 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|83950175|ref|ZP_00958908.1| putative ATP-dependent RNA helicase protein [Roseovarius nubinhibens ISM] gi|83838074|gb|EAP77370.1| putative ATP-dependent RNA helicase protein [Roseovarius nubinhibens ISM] Length = 431 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 184/335 (54%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + EAL+ G+ T +Q + L D+L AQTG+GKT+AFGL L + LLAE + + Sbjct: 13 LNEALTRAGFSEPTPIQNQAIPLALEGHDILGLAQTGTGKTLAFGLPLINHLLAEPGKPA 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P +A AL +APTREL Q+ L L T + VA +GG S++R+ L G I+V Sbjct: 73 PKTAK-ALILAPTRELVNQIADSLRNLTDGTRLRVATVVGGQSINRQITFLARGTDILVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + +++ ++ +VLDEAD+MLDLGF + I R+ ++FSAT+ Sbjct: 132 TPGRLIDLMDRRAVDLGSVRHLVLDEADQMLDLGFIHALRKIAPRLGTPRQTMLFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L++ Y ++ +V ++ + I + + + + IL +VF Sbjct: 192 KQMEELSRAYLENPRKVQVSPPGKAADKITQSVHFLEKPAKPSKLREILSRDMDALTLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K L + ++ G SQ +R A++ R G V +ATDVAARGID+ Sbjct: 252 SRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINVLVATDVAARGIDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 P + VI+ +L P+N +HR GRT RAGR+G ++ Sbjct: 312 PGVAYVINYDLPDVPDNYVHRIGRTARAGREGEAI 346 >gi|15640333|ref|NP_229960.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591056|ref|ZP_01678369.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80] gi|121729652|ref|ZP_01682129.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52] gi|147674746|ref|YP_001218575.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395] gi|153803135|ref|ZP_01957721.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3] gi|153822829|ref|ZP_01975496.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33] gi|153827161|ref|ZP_01979828.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2] gi|153831014|ref|ZP_01983681.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39] gi|227080519|ref|YP_002809070.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2] gi|229506898|ref|ZP_04396406.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286] gi|229509271|ref|ZP_04398754.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33] gi|229512687|ref|ZP_04402155.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21] gi|229516215|ref|ZP_04405663.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9] gi|229520976|ref|ZP_04410397.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80] gi|229524737|ref|ZP_04414142.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis VL426] gi|229527200|ref|ZP_04416593.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)] gi|229606411|ref|YP_002877059.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236] gi|254227021|ref|ZP_04920581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51] gi|254851439|ref|ZP_05240789.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10] gi|255744103|ref|ZP_05418057.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101] gi|262161995|ref|ZP_06031012.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1] gi|262167974|ref|ZP_06035673.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27] gi|262192566|ref|ZP_06050716.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93] gi|298500937|ref|ZP_07010739.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757] gi|32363416|sp|Q9KV52|RHLB_VIBCH RecName: Full=ATP-dependent RNA helicase rhlB gi|189040085|sp|A5F3R4|RHLB_VIBC3 RecName: Full=ATP-dependent RNA helicase rhlB gi|254797692|sp|C3LQR1|RHLB_VIBCM RecName: Full=ATP-dependent RNA helicase rhlB gi|9654717|gb|AAF93479.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547089|gb|EAX57224.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80] gi|121628586|gb|EAX61065.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52] gi|124121326|gb|EAY40069.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3] gi|125620457|gb|EAZ48831.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51] gi|126519647|gb|EAZ76870.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33] gi|146316629|gb|ABQ21168.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395] gi|148873506|gb|EDL71641.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39] gi|149738958|gb|EDM53276.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2] gi|227008407|gb|ACP04619.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2] gi|227012164|gb|ACP08374.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395] gi|229335208|gb|EEO00692.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)] gi|229338318|gb|EEO03335.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis VL426] gi|229341861|gb|EEO06862.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80] gi|229346641|gb|EEO11611.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9] gi|229350197|gb|EEO15149.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21] gi|229353586|gb|EEO18523.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33] gi|229356003|gb|EEO20922.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286] gi|229369066|gb|ACQ59489.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236] gi|254847144|gb|EET25558.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10] gi|255738368|gb|EET93759.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101] gi|262023507|gb|EEY42209.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27] gi|262028373|gb|EEY47029.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1] gi|262031611|gb|EEY50199.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93] gi|297540441|gb|EFH76500.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757] gi|327483175|gb|AEA77582.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae LMA3894-4] Length = 438 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 121/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQVI + L ++G+V T +Q L L +D+ AQTG+GKT+AF A + LL Sbjct: 18 PQVI-DGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73 Query: 68 RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +PA + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ L Sbjct: 74 --TPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179 Q+G I++GT GR+ D + + N++H++AVVLDEAD M DLGF DI F+ PK Sbjct: 132 QSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT+S + LA + + V + E + I + + + ++ Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLI 251 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 AI+F +T+ + LA +V L+G++ Q++R L+ G + + Sbjct: 252 EEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILV 311 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 460 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T++Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|269962284|ref|ZP_06176636.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] gi|269832987|gb|EEZ87094.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3] Length = 437 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 189/342 (55%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65 PQVI E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL E Sbjct: 18 PQVI-EGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ LQ+G Sbjct: 77 HEGRKP-TQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 I++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S + LA + + V + E + I + D+ + ++ Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AIVF +T+ LA +V L+G++ Q++R L+ G + +ATDV Sbjct: 256 PDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|121715182|ref|XP_001275200.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1] gi|134034067|sp|A1C5V3|DBP3_ASPCL RecName: Full=ATP-dependent RNA helicase dbp3 gi|119403357|gb|EAW13774.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1] Length = 503 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 194/359 (54%), Gaps = 12/359 (3%) Query: 4 FENIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62 F ++P + S + + T +Q A +DV+ A+TGSGKT+AFGL + Sbjct: 88 FSHLPSCDSKLYSSLSSFASPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKI 147 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 L + P A+ I+PTRELA+Q+ ++ G+ GGV +R L+ Sbjct: 148 LDSGKIKFKNARPAAVIISPTRELAMQIYDQISKYAGSIGIKATCIFGGVKKDEQREALK 207 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRR 181 + A IVV TPGRL D +++ +K +VLDEAD MLD GF DI+ I+ S+P KR+ Sbjct: 208 SAA-IVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIISSTPDSKRQ 266 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVN 237 +MF+AT P++ LA + AV V I +++ R ++ I +V D++ +V Sbjct: 267 TVMFTATWPPSVRDLAATFMTSAVTVTIGGDPSADPRANTRIKQTVEVVQSHDKEYRLVQ 326 Query: 238 ILRYH--GA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 +L + GA +VFC + R ++L F+V + G+L+Q ER +L + Sbjct: 327 LLSENQRGAAALDKVLVFCLYKKEAMRVERLLRNKNFKVAGIHGDLNQHERFKSLDAFKS 386 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 G A V +ATDVAARG+D+P ++LVI+ E+ +HR GRTGRAG +G ++ + + Sbjct: 387 GAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGRAITLFTET 445 >gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon pisum] Length = 411 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 116/354 (32%), Positives = 196/354 (55%), Gaps = 7/354 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ DV+ AQ+G+GKT F +++ L + D + + AL Sbjct: 57 GFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTATFSISI----LQQID--TSLNECQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L CIGG +V + R L G+H+VVGTPGR+ D Sbjct: 111 ILAPTRELAQQIQKVVIALGDFMKADCHACIGGTNVRDDMRKLDTGSHVVVGTPGRVYDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I K L +K VLDEADEML GF+D I+ + + ++++ SAT+ + ++ Sbjct: 171 IARKSLRTQFIKIFVLDEADEMLSRGFKDQIKEVFKFLEEDIQVILLSATMPEDVLDVST 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 ++ ++ VR+ + E I + V + + + + ++ A++FC+TR V Sbjct: 231 HFMRNPVRILVQKEELTLEGIKQFYINVTKEEWKFDTLCDLYDTLSITQAVIFCNTRRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + F V A+ GE+ Q++R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 291 EWLTENMRLKTFTVSAMHGEMDQRQRELIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + +L SN EN +HR GR+GR GRKG+++ I ++ +R + + N V+ P Sbjct: 351 NYDLPSNRENYIHRIGRSGRFGRKGVAINFITEDDKRAMKDIESFYNTHVLEMP 404 >gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens] gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo sapiens] gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct] gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct] gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens] Length = 715 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTRELA QV ++ + K + VA GG + + Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DHI+ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 298 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 416 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 515 >gi|314986130|gb|EFT30222.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2] Length = 491 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 193/362 (53%), Gaps = 11/362 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 26 GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 86 PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ A+ L + Y + V + + + + + A + ++ + I Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATD Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RLFR+ Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLFRQ 377 Query: 363 AN 364 A Sbjct: 378 AG 379 >gi|168025828|ref|XP_001765435.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683285|gb|EDQ69696.1| predicted protein [Physcomitrella patens subsp. patens] Length = 535 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 117/357 (32%), Positives = 191/357 (53%), Gaps = 20/357 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65 P+++ +A+ + GY + +Q A + L+++DV+ A+TGSGKT AF L + + + L Sbjct: 123 PELL-KAVQKVGYTKPSPIQMAAIPIGLQQRDVIGIAETGSGKTAAFVLPMLTYISKLPP 181 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 A P A+ +APTRELA Q+ E + V +GG S+ + L+ G Sbjct: 182 MTEEIEAEGPYAVVMAPTRELAQQIEDETVKFAHFLDIRVVSIVGGQSIEEQGFKLRQGC 241 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------ 179 +V+ TPGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 242 EVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPEN 301 Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 R MFSAT+ PA+ LA+ Y ++ V V I + + I ++V Sbjct: 302 EDAELDTHKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKE 361 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 +++ + + +L G K AI+F +T+ S ++ L ++ ++V L G +Q++R +L Sbjct: 362 TEKLDRLCRVLNDMGDKTAIIFVNTKKSADTLSRQLDKNGYRVTTLHGGKTQEQREVSLD 421 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R+ R +ATDVA RGID+PD+ VI+ ++ N E HR GRTGRAG+ G++ Sbjct: 422 GFRNKRFNCLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGIAT 478 >gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3] gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3] Length = 464 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|145596599|ref|YP_001160896.1| DEAD/DEAH box helicase domain-containing protein [Salinispora tropica CNB-440] gi|145305936|gb|ABP56518.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440] Length = 461 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 124/352 (35%), Positives = 186/352 (52%), Gaps = 7/352 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +PQ + L+ +G +Q A + L +DVL QTGSGKT+AFGL L + L A Sbjct: 15 GLPQPLVRELARQGITTPFEIQRATMPDALAGRDVLGRGQTGSGKTLAFGLPLLARL-AN 73 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +R P P AL + PTRELA+QV L L GV + +GGV R+ L+ G Sbjct: 74 GERARPRH-PRALVLVPTRELAMQVSDALFPLGRTIGVFLRTAVGGVPYDRQISSLRRGV 132 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL D I + ++ VLDEAD+M D+GF ++ +L +P + L+F Sbjct: 133 EVLVATPGRLADLIERGVCRLDDIEVTVLDEADQMADMGFLPEVTELLAKTPADAQRLLF 192 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + + D V + A +D+ +L+ D+ + + +I G Sbjct: 193 SATLDKDVDALVRRFMTDPVTHSTAPPTAAVETMDHHLLLIPPHDKFSVVASIAAREG-- 250 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ V R LA + L G +Q+ R+ L R+GR V +ATDVAA Sbjct: 251 RTMVFARTQLGVDRLVGQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRTNVLVATDVAA 310 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRRA 356 RGI + + LV+H + +P++ LHR+GRT RAG G ++ +P+ QRR Sbjct: 311 RGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGETGAVATLALPK--QRRG 360 >gi|73996628|ref|XP_863206.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 11 [Canis familiaris] Length = 811 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 118/369 (31%), Positives = 193/369 (52%), Gaps = 32/369 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L S + E Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLSGI-EE 455 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +D+ P A+ +APTRELA Q+ E G+ IGG+S + L+ G Sbjct: 456 SDQ-----GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC 510 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177 IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 511 EIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDT 570 Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219 K R+ +MF+AT+ PA+ LA++Y + V I S + H + Sbjct: 571 DEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERV 630 Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 + + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 631 EQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKG 690 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRAG Sbjct: 691 QEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG 750 Query: 340 RKGMSVFVI 348 + G+++ + Sbjct: 751 KSGVAITFL 759 >gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis] Length = 628 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 201/363 (55%), Gaps = 15/363 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L VQ KDV+ A+TG+GKT +F + L L ++ Sbjct: 63 LKARGVTYLFPVQVKTFKHISEGKDVIAQARTGTGKTFSFAIPLIEKLQRDSQERKRGRT 122 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA+QV R+ + + K + VA GG + + + ++NG I+VGTPGR Sbjct: 123 PKVLVLAPTRELAMQVARDFKDVTRK--LTVACFYGGTAYNGQLDLIRNGIDILVGTPGR 180 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----RMLMFSATI 189 + DH+ L IS LK VVLDE D+MLD+GF D +E IL + KK + L+FSAT Sbjct: 181 IKDHLENGKLEISSLKHVVLDEVDQMLDMGFADQVEDILKYAYKKDSEDNPQTLLFSATC 240 Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y K ++++ + + + +++ A+ S R I ++L+ Y G+ Sbjct: 241 PHWVYDVAKKYMKSKYEQIDLIGKKTKKTAMTVEHLAIECHWSQRAAVIGDVLQVYSGSH 300 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+FC T+ + L + Q +L G++ Q++R L+ R+G V +AT+V Sbjct: 301 GRTIIFCETKKEATEL--ALNASIKQDAQSLHGDIPQKQREVTLKGFRNGAFGVLVATNV 358 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++LVI + + E+ +HRSGRTGRAGR GM + + + +++ ++A Sbjct: 359 AARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGMCICFYQRKEDYQLKQVEQKA 418 Query: 364 NVS 366 ++ Sbjct: 419 GIT 421 >gi|116515159|ref|YP_802788.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257013|gb|ABJ90695.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 576 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 122/375 (32%), Positives = 197/375 (52%), Gaps = 8/375 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 ++L GY + +Q A + L KDVL AQTGSGKT AF L L N+ Sbjct: 19 KSLKILGYEKPSPIQSACIPYLLSGKDVLGMAQTGSGKTAAFALPLL------NNINISL 72 Query: 73 SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L + PTRELAVQV + ++ G V GG + L+ G I+VGT Sbjct: 73 KFPQILVLVPTRELAVQVAKSFSDFSKYLIGTQVLALYGGQRYEIQLHALRRGPQIIVGT 132 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH++ L++ HL ++VLDEADEML +GF +D+E I+ P+K + +FSAT+ Sbjct: 133 PGRLLDHLKRGTLSLIHLSSLVLDEADEMLRMGFIEDVETIMSKIPRKHQTALFSATMPN 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +++ + + I S DI ++ + + +A++ L I+F Sbjct: 193 IIRRISRRFMNTPKEIKIQSTGITRPDIQ-QSYWIVRGRKTDALIRFLEVEDFSATIIFV 251 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + ++ L ++ + AL+G+++Q R L+ +++G+ + IATDVAARG+D+ Sbjct: 252 RTKNATLEVSEALEKNGYNSAALNGDMNQVLREQTLERLKNGKLDILIATDVAARGLDVD 311 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 + VI+ ++ ++ E+ +HR GRTGRAGR G ++ + R + + R + Sbjct: 312 RISFVINYDIPTDAESYVHRIGRTGRAGRTGRALLFVEYREYRLLKNIERIIKHPIHEIQ 371 Query: 372 APSVEAIRERDAQRI 386 P E + E+ Q I Sbjct: 372 LPKSEILIEKRLQNI 386 >gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica] Length = 781 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 119/352 (33%), Positives = 187/352 (53%), Gaps = 11/352 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAI 80 T +Q+ + L +D++ AQTGSGKT AF + + + L+ ++ R+S + P L + Sbjct: 208 TPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLIL 267 Query: 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 APTRELA+Q+ E + T + V GG H + R++Q G H++V TPGRL D I Sbjct: 268 APTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 327 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK--KRRMLMFSATISPAITTL 196 +++ K +VLDEAD MLD+GF I I++ S P R+ LMFSAT I L Sbjct: 328 KNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKL 387 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCSTRA 255 A ++ + + + + I + + ++ N + NI I +F T+ Sbjct: 388 AADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVEKLNYLKNIFNTTAPNTLILIFVETKK 447 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 + L + V ++ G+ SQ ER AL M R+G+ + +AT VAARG+D+P+++ Sbjct: 448 GADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAARGLDIPNVKH 507 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--RLFREAN 364 VI+ +L S+ E +HR GRTGR G G + F + +N + L +EAN Sbjct: 508 VINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAIDLVDLLKEAN 559 >gi|319425941|gb|ADV54015.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 449 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 191/346 (55%), Gaps = 5/346 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ Q + ++L G T++QE L L KD++ S++TGSGKT+AF L +++ Sbjct: 7 SLDQRLLQSLKHMGITAPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P L + PTRELA QV +L L A T +GG + + + + L Sbjct: 67 --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184 H +V TPGR+ DH+ K L ++ L+ ++LDEAD MLDLGF ++ I +++ KRR LM Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHKRRQTLM 184 Query: 185 FSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242 FSAT+ + I +A K+ V I + + +H+DI R L D A++ +L+ Sbjct: 185 FSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEALLTRLLQDE 244 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K IVF +TR R L+ F ALSG+L Q R+ + G+ ++ + TD Sbjct: 245 THKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQQILVTTD 304 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VA+RG+DL ++ LVI+ ++ E +HR GRTGRAG KG ++ ++ Sbjct: 305 VASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350 >gi|301310161|ref|ZP_07216100.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3] gi|300831735|gb|EFK62366.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3] Length = 421 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 182/343 (53%), Gaps = 3/343 (0%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++ + I +AL + GY T +Q + + D+L AQTG+GKT AF + + Sbjct: 3 FEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQR 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + AL + PTRELA+Q+G G+ V GGV + L Sbjct: 63 LYLQKKKGYKRGIK-ALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEAL 121 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I++ TPGRL D I +++ L+ VLDEAD MLD+GF DI+ IL PKKR+ Sbjct: 122 ERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 181 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ P I LA + +V + + ID V +++ N + ++L Sbjct: 182 SLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLEN 241 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ ++F T+ + +VL++ A+ G SQ R AL +D RV IAT Sbjct: 242 PELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIAT 301 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 D+AARGID+ L VI+ EL + PE +HR GRTGRAGR+G++ Sbjct: 302 DIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVA 344 >gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1] gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene) [Bradyrhizobium sp. BTAi1] Length = 469 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 180/343 (52%), Gaps = 1/343 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + AL E Y T +Q + L+ +DV+ AQTG+GKT +F L + LL Sbjct: 8 NLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILHRLLEN 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P +A L ++PTREL+ Q+ + A+ IGGV + R+ R L G Sbjct: 68 RIKPQPKTA-RVLVLSPTRELSGQILDSFNTYGRHIRLTSALAIGGVPMGRQVRALMPGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL D ++G L ++ ++ +VLDEAD MLD+GF +DI I+ P KR+ L F Sbjct: 127 DVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA +D RV + + I R + V S + + + +L+ Sbjct: 187 SATMPKDIAELADAMLRDPARVAVTPVSSTVERITQRVIQVDHSAKPSLLAQLLKDEPVN 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A+VF T+ + K L + A+ G SQ R L R G R +ATD+AA Sbjct: 247 RALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ + V++ +L + PE +HR GRT RAG G+++ ++ Sbjct: 307 RGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLV 349 >gi|127511883|ref|YP_001093080.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126637178|gb|ABO22821.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 432 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 118/351 (33%), Positives = 190/351 (54%), Gaps = 2/351 (0%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+SE GY +T +Q+ + R +DVL SAQTG+GKT AF L + + Sbjct: 6 FSFAPEIL-HAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMF 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 ++ + S AL +APTREL QV ++ + V GGV + + ++ Sbjct: 65 -DSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAKVKK 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA I+V TPGRL +H++ LN+S++ +VLDEAD MLD+GF DI+ IL + R+ L Sbjct: 124 GADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + + +N + V + + ++ Sbjct: 184 LFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLSELIGKKN 243 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + +VF +TR + K L + E +Q R AL+ ++G+ R +AT+V Sbjct: 244 WQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRALVATEV 303 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 AARG+D+P+LE V++ +L E+ +HR GRTGRAGR G+++ ++ + +R Sbjct: 304 AARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEER 354 >gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes] Length = 783 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTRELA QV ++ + K + VA GG + + Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DHI+ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 484 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 583 >gi|15604513|ref|NP_221031.1| putative ATP-dependent RNA helicase RHLE (rhlE) [Rickettsia prowazekii str. Madrid E] gi|3861207|emb|CAA15107.1| PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE) [Rickettsia prowazekii] gi|292572297|gb|ADE30212.1| ATP-dependent RNA helicase RhlE [Rickettsia prowazekii Rp22] Length = 407 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 195/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 1 MKNF-NLSKELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLID 59 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 60 AFIK--------NKTTALILVPTRELATQIHSTLNKVTTAYKMNSAVLIGGEPMFKQFMQ 111 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ +H+ + L I H+ +VLDE D MLD+G ++ +E I P+KR Sbjct: 112 LKKNPKVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEEINKFLPEKR 171 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I +++ Y + VR+ + + N+ ++I + V+ ++ + + L Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSELTKQLG 231 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + + I+F T+ S + K+L + A+ G+LSQ +R + R R+ +A Sbjct: 232 -NRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVA 290 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVR 345 >gi|21223535|ref|NP_629314.1| helicase [Streptomyces coelicolor A3(2)] gi|9714451|emb|CAC01367.1| putative helicase [Streptomyces coelicolor A3(2)] Length = 879 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 121/327 (37%), Positives = 179/327 (54%), Gaps = 16/327 (4%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSPAS---APLALAIAPTRELA 87 L KDV+ A+TG+GKT+ FGL L + D R +P S AP AL + PTREL Sbjct: 7 LSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAAPESLTDAPQALVVVPTRELC 66 Query: 88 VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS 147 QV +L V V GG + + L+ G ++VGTPGRL D L++ Sbjct: 67 QQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKQGVDVIVGTPGRLLDLAGQNKLSLK 126 Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRV 207 H+K++VLDEADEMLDLGF D+E I++ P +R+ ++FSAT+ A+ LA+ Y + Sbjct: 127 HIKSLVLDEADEMLDLGFLPDVEKIINMLPARRQTMLFSATMPGAVIGLARRYMSQPTHI 186 Query: 208 NIASENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 + S + + + + YRA + D+ + IL+ G A+VFC T+ + + Sbjct: 187 SATSPDDEGATVANTKQFIYRAHNM---DKPEMVARILQADGRGLAMVFCRTKRTAADLA 243 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 L + F A+ G+L Q R AL+ R+G+ V + TDVAARGID+ + VI+ + Sbjct: 244 DQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQS 303 Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVI 348 + LHR GRTGRAG KG ++ ++ Sbjct: 304 PEEEKTYLHRIGRTGRAGAKGTAITLV 330 >gi|302765623|ref|XP_002966232.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii] gi|300165652|gb|EFJ32259.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii] Length = 412 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 116/328 (35%), Positives = 178/328 (54%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P R DV+ AQ+G+GKT F S +L + D + AL Sbjct: 58 GFEKPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATF----CSGILQQLD--GHLNECQAL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V C+GG V +++R Q G H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQRICQAGVHVVVGTPGRVYDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L H++ VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGLFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + + VR+ + + I V V D + + + ++ +++FC+TR V Sbjct: 232 KFMSNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNTRRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T L V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L + PEN LHR GR+GR GRKG+++ Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAI 379 >gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146] gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146] Length = 448 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 182/340 (53%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL ++GY T++Q A + P + +DVL SA TG+GKT AF L LL + S Sbjct: 17 DALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA+QV + L T + + GGVS +VV TP Sbjct: 75 GPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFNTNQDLVVATP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SP 191 GRL +I+ + + ++ ++LDEAD MLD+GF DIE + + +R+ L+FSAT+ S Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQTLLFSATLESD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248 A+ A D V V+ R+ I YRA +L + + N+LR ++ Sbjct: 195 AVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRAD--SLKHKTALLCNLLRQPDVTKSV 252 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F R V L + Q L GE+ Q +R+ A++ M DGR V +ATDVAARG+ Sbjct: 253 IFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDVAARGL 312 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+PD+ V + ++ + + LHR GRT RAGRKG ++ +I Sbjct: 313 DIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLI 352 >gi|163859073|ref|YP_001633371.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804] gi|163262801|emb|CAP45104.1| putative ATP-dependent RNA helicase [Bordetella petrii] Length = 584 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/373 (32%), Positives = 203/373 (54%), Gaps = 14/373 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL G+ T VQ A + L D++VS+QTGSGKT AF L + + + P + Sbjct: 15 ALQAAGFSAPTPVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPALNRIAGQ-----PGN 69 Query: 74 APLA---LAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIV 128 + L + PTRELA+QV E Y + G+ A +GG+ + + L ++ Sbjct: 70 KGVGVQVLVLTPTRELALQV-TEATGSYGRNLPGLRTATVVGGMPYGAQLKALSRRVDVL 128 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ + ++ + +VLDEAD MLD+GF +DIE I++ P++R+ L+FSAT Sbjct: 129 VATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPQERQTLLFSAT 188 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKN 246 + + LA ++ R+ +A + +H++I +++L A S + + ++LR Sbjct: 189 LDGTVAKLAARMMREPQRIEMAGQKEKHTNI-TQSLLYADDASHKMQLLDHVLRDAKLDQ 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF +T+ LA+ F AL G+++Q++R+ L ++ G+ R+ +ATDVAAR Sbjct: 248 AIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLTQLQRGQLRILVATDVAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GID+ + ++ +L E+ +HR GRTGRAGR G + + + + R+ S Sbjct: 308 GIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRDGQAYTLATHAERHKVRRIEHYIGQS 367 Query: 367 VVWEPAPSVEAIR 379 + E +E R Sbjct: 368 ITPETIAGLEPKR 380 >gi|126664124|ref|ZP_01735117.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38] gi|126623838|gb|EAZ94533.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38] Length = 419 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 112/345 (32%), Positives = 184/345 (53%), Gaps = 4/345 (1%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +K++ NI Q AL E GY N T +QE + L +D++ AQTG+GKT AF + + + Sbjct: 6 LKLYNNIQQ----ALEEEGYTNPTPIQEQAIPEILLGQDLVACAQTGTGKTGAFAIPILN 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + A L + PTRELA+Q+ + T V V GGV+ + + Sbjct: 62 LIHKIVGSAKKAKHIRTLVVTPTRELAIQIDESFKTYGKYTNVKSLVIFGGVNQVPQVNE 121 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G +++ TPGRL D + +++ HL +VLDEAD+MLD+GF +D++ I+ +P R Sbjct: 122 LKMGIDVLIATPGRLLDLHKQGFIDLDHLHHLVLDEADQMLDMGFINDVKKIIKLTPDNR 181 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ AI LA + +++ + ++ + V D+ + ++ Sbjct: 182 QTLLFSATMPIAIRELADTFLTRPKYISVTPISSTAENVSQKVYFVNKDDKRLLLKQLII 241 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 NA+VF T+ KVL + + A+ G+ SQ R L+ ++ + +A Sbjct: 242 EESLSNALVFTRTKHGADNIVKVLKKAHIKAEAIHGDKSQNARQRVLEQFKNKEIDILVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TD+AARGID+ L VI+ ++ + E +HR GRTGRAG G+++ Sbjct: 302 TDIAARGIDIEQLPFVINFDIPNISETYVHRIGRTGRAGNSGLAI 346 >gi|322712791|gb|EFZ04364.1| eukaryotic initiation factor 4A-12 [Metarhizium anisopliae ARSEF 23] Length = 402 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 47 GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 100 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 101 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 160 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 161 IRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 220 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V D + + + ++ A++FC+TR V Sbjct: 221 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 280 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ G++ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 281 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 340 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 341 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVR 377 >gi|150007803|ref|YP_001302546.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC 8503] gi|256840069|ref|ZP_05545578.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13] gi|298376828|ref|ZP_06986783.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19] gi|149936227|gb|ABR42924.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC 8503] gi|256738999|gb|EEU52324.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13] gi|298266706|gb|EFI08364.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19] Length = 421 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 182/343 (53%), Gaps = 3/343 (0%) Query: 4 FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++ + I +AL + GY T +Q + + D+L AQTG+GKT AF + + Sbjct: 3 FEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQR 62 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + AL + PTRELA+Q+G G+ V GGV + L Sbjct: 63 LYLQKKKGYKRGIK-ALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEAL 121 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G I++ TPGRL D I +++ L+ VLDEAD MLD+GF DI+ IL PKKR+ Sbjct: 122 ERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 181 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT+ P I LA + +V + + ID V +++ N + ++L Sbjct: 182 SLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLEN 241 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ ++F T+ + +VL++ A+ G SQ R AL +D RV IAT Sbjct: 242 PELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIAT 301 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 D+AARGID+ L VI+ EL + PE +HR GRTGRAGR+G++ Sbjct: 302 DIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVA 344 >gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL 181] gi|143462290|sp|A1D405|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3 gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL 181] Length = 472 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 188/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + F Sbjct: 65 EACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSF--- 121 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+ + E L + V AV +GG+ + + L HI+V TP Sbjct: 122 ---FGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATP 178 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P++RR +FSAT+S Sbjct: 179 GRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSS 238 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+++S Q S + + + +D +V +L ++AI+F Sbjct: 239 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSAIIF 298 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R + +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 299 TRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ +L ++ + +HR GRT RAG+ G+++ + Q Sbjct: 359 PSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ 398 >gi|294667681|ref|ZP_06732893.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602521|gb|EFF45960.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 430 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 188/347 (54%), Gaps = 11/347 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ G T +Q+ + P L +D++ AQTGSGKT+A+ L L + +P + Sbjct: 19 ALARAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYALPLL-----QQRCLAPDT 73 Query: 74 APL---ALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128 AP AL + PTRELA QV L L A + V GG S++ + L+ GA IV Sbjct: 74 APRVLGALVLVPTRELAAQVEDTLRQLAAHLPRRLKSVVATGGSSINPQLLALRGGADIV 133 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + L +S +VLDEAD +L+LGF +++ IL P +R+ ++FSAT Sbjct: 134 VATPGRLLDLVEHNALRLSEAATLVLDEADRLLELGFGAELDRILALLPAQRQTVLFSAT 193 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 PAI +LAK +D +R+ I + Q I RA+ V R + ++L H + Sbjct: 194 FPPAIASLAKRRLRDPLRITIDATPEQAPAIAQRAIAVDAGQRTQLLRHLLLEHAWPQLL 253 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF ++R S + + L++ + L GELSQ R L+ + +V +ATD+A RGI Sbjct: 254 VFVASRHSAEKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLAGRGI 313 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 D+ L V++ +L + + HR GRT RAG G+++ FV + Q+ Sbjct: 314 DIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 360 >gi|157964817|ref|YP_001499641.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5] gi|157844593|gb|ABV85094.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5] Length = 415 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 193/355 (54%), Gaps = 11/355 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MK F N+ + + AL T +Q+ + + D+L S+QTGSGKT+A+ L L Sbjct: 6 MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 64 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + + + AL + PTRELA Q+ L + + AV IGG + ++ Sbjct: 65 SFIK--------NKTTALILVPTRELATQIHSTLNKVTISYKINSAVLIGGEPMPKQFMQ 116 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ +++GTPGR+ DH+ L I + VLDE D MLD+G ++ +E I P+KR Sbjct: 117 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 176 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 ++LMFSAT+ I +++ Y + VR+ + + N+ ++I ++ V+ ++ + + L Sbjct: 177 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSELTKQLG 236 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + I+F T+ S + K+L A+ G+LSQ++R + R R+ +A Sbjct: 237 NREG-SVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 295 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 TDVAARG+D+P + VI+ +L PE+ LHR GRTGRAG G ++ F+ P ++ R Sbjct: 296 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIR 350 >gi|15598036|ref|NP_251530.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] gi|116050844|ref|YP_790333.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14] gi|218890962|ref|YP_002439828.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] gi|254235828|ref|ZP_04929151.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719] gi|254241507|ref|ZP_04934829.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192] gi|9948926|gb|AAG06228.1|AE004710_10 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] gi|115586065|gb|ABJ12080.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas aeruginosa UCBPP-PA14] gi|126167759|gb|EAZ53270.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719] gi|126194885|gb|EAZ58948.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192] gi|218771187|emb|CAW26952.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58] Length = 567 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 125/365 (34%), Positives = 203/365 (55%), Gaps = 11/365 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77 GY + +Q + L D++ AQTG+GKT AF L L S R P+ P Sbjct: 36 GYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLS-------RIDPSRREPQM 88 Query: 78 LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 L + PTRELA+QV E Y+K GV V GG + + + L+ GA I+V TPGRL Sbjct: 89 LVLVPTRELALQVATACET-YSKQLPGVGVVAVYGGAPMGPQLKALRQGAQILVATPGRL 147 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 CDH+R ++ ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++FSAT+ +I Sbjct: 148 CDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVLFSATLPASIRG 207 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 +A+ + K V IA++ + + I+ ++V + +I +L I F T+ Sbjct: 208 IAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQFDALIAFVRTKQ 267 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 + + ++L ++ AL+G++ Q +R ++ ++DG + IATDVAARG+D+P + Sbjct: 268 ATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIATDVAARGLDVPRITH 327 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375 V++ ++ +PE+ +HR GRTGRAGR+G ++ ++ +R + + R V P Sbjct: 328 VLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKVGEVRLPDA 387 Query: 376 EAIRE 380 E + E Sbjct: 388 ETVLE 392 >gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21] gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21] Length = 464 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|219113631|ref|XP_002186399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209583249|gb|ACI65869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 414 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 185/342 (54%), Gaps = 9/342 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + + G+ +++Q+ + P + KD++ AQ+G+GKT F + + Sbjct: 47 ELPEELLRGIFSYGFEKPSAIQQRAIKPTILAKDLIAQAQSGTGKTATFAIGTLA----- 101 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 R P AL +APTRELA Q+ + + L + V C+GG +V + R LQ G Sbjct: 102 --RLDPKLRECQALILAPTRELAQQIQKVVLALGDYMDIQVHACVGGTAVRDDIRTLQAG 159 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 H+VVGTPGR+ D I + L + ++ LDEADEML GF+D I I P+ ++ + Sbjct: 160 VHVVVGTPGRVFDMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPETVQVCL 219 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243 FSAT+ + + + + ++ VR+ + + I + V D + + ++ Sbjct: 220 FSATMPLDVLEVTERFMREPVRILVKKDELTLEGIKQFYISVDKEDWKLETLCDLYETLT 279 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI++C+TR V + + + F V + G++ Q+ER ++ R G +RV I TD+ Sbjct: 280 ITQAIIYCNTRRKVDWLQEEMQKRDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDL 339 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ + LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 340 LARGIDVQQVSLVINFDLPTNRENYIHRIGRSGRFGRKGVAI 381 >gi|119491286|ref|ZP_01623340.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106] gi|119453450|gb|EAW34612.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106] Length = 509 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 185/355 (52%), Gaps = 8/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + + L G+ T VQ + L +D++ AQTG+GKT AF L + + + Sbjct: 47 ISEARAQHLESIGFTEPTPVQIQSIPQILSGRDIVGQAQTGTGKTAAFSLPILEQIDHQ- 105 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A AL + PTRELA+QV + + + + V GG S+ R+ + L+ G H Sbjct: 106 -----AKDVQALILTPTRELAMQVKDAIRKMSNERSLYVLTVYGGQSIERQVQRLERGVH 160 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVVGTPGR+ D + L + +K +VLDEADEML +GF D+E IL++S K R+ FS Sbjct: 161 IVVGTPGRVLDLLSRGKLKLHGIKWLVLDEADEMLSMGFIQDVEKILEASSKDRQTAFFS 220 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAK 245 ATI P+I L + + V V + I V + A+ IL + Sbjct: 221 ATIEPSIWKLVRKFLNSPVTVKVEQPKTTPKQISQEVYTVPRGWTKARALQPILELEDPE 280 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +AIVF T+ + + T L V G L+Q +R L R + R +ATD+AA Sbjct: 281 SAIVFVRTKQAAAELTSCLQGAGHSVDEYHGNLNQSQRERLLVRFRKRQVRWIVATDIAA 340 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 RG+D+ L VI+ +L N E+ +HR GRTGRAGR+G ++ ++ Q M RR R+ Sbjct: 341 RGLDVDHLTHVINYDLPDNAESYVHRIGRTGRAGREGKAITLL-QPMDRRKLRMI 394 >gi|134057099|emb|CAK44387.1| unnamed protein product [Aspergillus niger] Length = 491 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 113/331 (34%), Positives = 183/331 (55%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T++ E+ Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG ++ + R L G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VRV + + I + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365 >gi|119505818|ref|ZP_01627884.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080] gi|119458316|gb|EAW39425.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080] Length = 409 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 196/359 (54%), Gaps = 16/359 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSP 71 ++E G+ + +Q IL L+ D + AQTG+GKT AF + + + LL E +R+ Sbjct: 42 VAELGFQYCSPIQAKILPHTLQGHDAIGKAQTGTGKTAAFLITIFNDLLCNPPEGERY-- 99 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVG 130 + P A+ IAPTREL +Q+ + E L TG+ IGG ++ +Q+ +VV Sbjct: 100 LAEPRAVIIAPTRELVMQIAADAEDLGKFTGLQTVTMIGGADYQKQLAKVQSRVVDLVVA 159 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188 TPGRL D ++ + L + ++ +VLDEAD MLD+GF ++ I+ ++P+K R+ L+FSAT Sbjct: 160 TPGRLIDFMQRRDLFLDRVETLVLDEADRMLDMGFIPQVKRIVRATPRKEDRQTLLFSAT 219 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA+ + D V V I E + +D R LV +R ++ +LR A + I Sbjct: 220 FTQDILNLAQQWTFDPVTVEIEPERVATATVDQRVYLVTSHERLKVLLKVLRGPDAVSTI 279 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF + R V + L + LSGE++Q R+ L + G+ V +ATDVA RGI Sbjct: 280 VFANRRDQVRSLHEKLRKAGISCGILSGEITQARRTKTLADFKSGKIAVLVATDVAGRGI 339 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQNMQRRAERL 359 + + V++ L +PE+ +HR GRTGRAG G+S+ F++P ERL Sbjct: 340 HVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISISFASEDDAFLLPDIETLLGERL 398 >gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066] gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066] Length = 683 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 120/357 (33%), Positives = 198/357 (55%), Gaps = 10/357 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 ++ +A+ + G+ + T +QE + + D++ AQTG+GKT AF L + S L EN Sbjct: 63 LVLQAIKDLGFESPTPIQERAIPVMMSGDDMIGQAQTGTGKTAAFALPILSKLEPENKNI 122 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128 AL + PTRELA+QV + V I GG S + R +++GA +V Sbjct: 123 ------FALVLEPTRELALQVAESFQAFARHIEDFHVVPIYGGASYDNQIRSIRHGAQVV 176 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D I +++S + +V+DEADEML +GF DD+++IL+ +P +R +FSAT Sbjct: 177 VATPGRLIDLIERGKIDLSSVSYMVIDEADEMLRMGFIDDVDWILNHTPSERHTALFSAT 236 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI +A+++ V V I S+ + + R +V+ + +A+ IL + Sbjct: 237 MPEAIRRIARDHLNAPVEVRIESKTTTATTVHQRYWVVSGVHKIDAMTRILEVEPYDAVL 296 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ L AL G++ Q++R ++ +++G + IATDVAARG+ Sbjct: 297 VFVRTKTDAEDVANKLMARGMACAALHGDIPQRQREKIIERLKNGSLDIIIATDVAARGL 356 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362 D+ + V + ++ + E+ +HR GRTGRAGR+G ++ FV P+ + R+ ER+ R+ Sbjct: 357 DVDRITHVFNYDIPYDAESYVHRIGRTGRAGRQGEAILFVSPRERRALRQIERVTRQ 413 >gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC 51867] Length = 455 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 182/345 (52%), Gaps = 2/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 + Q I +AL+ + V+ ++Q L L +D++ A+TG GKT+ FG+ + + + Sbjct: 14 GVAQEITDALAAQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDRIFDD 73 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D P AL + PTREL VQVG +L V V GG + + L++G Sbjct: 74 ADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKALKDGT 133 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D L + ++ +VLDEADEMLDLGF IE I+ + + ++F Sbjct: 134 DLVVGTPGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIEKIIAGITAEHQTMLF 193 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHG 243 SAT+ AI LA+ + V + ++ + V+ D+ I +L+ G Sbjct: 194 SATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVLQARG 253 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ S + + LA FQV ++ G++SQ R +LQ RDG + +ATDV Sbjct: 254 RGRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDILVATDV 313 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ D+ VI+ + + +HR GRTGRAG G +V ++ Sbjct: 314 AARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLV 358 >gi|115454521|ref|NP_001050861.1| Os03g0669000 [Oryza sativa Japonica Group] gi|75327677|sp|Q7Y183|RH10_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 10 gi|31126733|gb|AAP44655.1| putative RNA helicase [Oryza sativa Japonica Group] gi|53370642|gb|AAU89137.1| DEAD/DEAH box helicase domain containing protein [Oryza sativa Japonica Group] gi|108710302|gb|ABF98097.1| ATP-dependent RNA helicase DDX47, putative, expressed [Oryza sativa Japonica Group] gi|113549332|dbj|BAF12775.1| Os03g0669000 [Oryza sativa Japonica Group] gi|125545183|gb|EAY91322.1| hypothetical protein OsI_12939 [Oryza sativa Indica Group] gi|215695397|dbj|BAG90588.1| unnamed protein product [Oryza sativa Japonica Group] Length = 472 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 114/345 (33%), Positives = 193/345 (55%), Gaps = 6/345 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+++ A G+ T +Q + L +D++ QTGSGKT AF L + LL ++ Sbjct: 49 VPELVA-ACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQALLKQD 107 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A A ++PTRELA Q+G++ E L + G+ V +GGV ++ L H Sbjct: 108 K----PQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPH 163 Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVVGTPGRL DH+ KG +++ LK +VLDEAD++L++ F+ ++ IL+ PK+RR +F Sbjct: 164 IVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKERRTFLF 223 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ ++ L + ++ V+V +AS+ + V +D +V++L Sbjct: 224 SATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNELPGS 283 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T S L F+ +++SG++SQ +R AL + + I TDVA+ Sbjct: 284 MIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVAS 343 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+ +++VI+ ++ N ++ +HR GRT RAG G +V ++ Q Sbjct: 344 RGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQ 388 >gi|224285260|gb|ACN40356.1| unknown [Picea sitchensis] Length = 411 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 121/350 (34%), Positives = 187/350 (53%), Gaps = 7/350 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D P AL Sbjct: 57 GFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATF----CSGILQQLDYNVPECQ--AL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V V C+GG S+ + R LQ G H+VVGTPGR+ D Sbjct: 111 VLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L +K VLDEADEML GF+D I I P ++ +FSAT+ P + + Sbjct: 171 LRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSNLQVGVFSATMPPEALEITR 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 231 KFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 291 DMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 + +L + PEN LHR GR+GR GRKG+++ I ++ +R + + R NV V Sbjct: 351 NYDLPTQPENYLHRIGRSGRFGRKGVAINFITKDDERMLQDIQRFYNVVV 400 >gi|224096618|ref|XP_002310673.1| predicted protein [Populus trichocarpa] gi|222853576|gb|EEE91123.1| predicted protein [Populus trichocarpa] Length = 462 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 116/339 (34%), Positives = 186/339 (54%), Gaps = 3/339 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA G+ N T +Q + L KD++ AQTGSGKT AF L + LL + + Sbjct: 39 EACDSLGWKNPTKIQVEAVPHALEGKDLIGLAQTGSGKTGAFALPILQALLESSQK--SV 96 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A ++PTRELA+Q+ + E L + G+ V +GGV + ++ L HIVV TP Sbjct: 97 QPFFACVLSPTRELAIQIAEQFEALGSGIGLRCGVLVGGVDIVQQTLILAKRPHIVVATP 156 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +VLDEAD +L+ F ++ IL+ P+ R+ +FSAT++ Sbjct: 157 GRLLDHLSNTKGFSLRTLKYLVLDEADRLLNEEFEKSLDEILNVIPRDRKTYLFSATMTK 216 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + ++ V++ AS+ + + V +D +V IL A+VF Sbjct: 217 KVKKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVPSKHKDCYLVYILTEMSNSTAMVFT 276 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T + S VL + + ++G +SQ +R AL + V I TDVA+RG+D+P Sbjct: 277 RTCDATSFLALVLRNLGLRAIPINGHMSQPKRLGALNKFKARECNVLICTDVASRGLDIP 336 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ SN ++ +HR GRT RAGR G+++ ++ Q Sbjct: 337 SVDMVINYDVPSNSKDYIHRVGRTARAGRSGVAISLVNQ 375 >gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 390 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 177/341 (51%), Gaps = 4/341 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ ++ GY + +Q + P +DV A+TG+GKT AF L + LL Sbjct: 23 PRIVAN-VARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIHRLLTGAG 81 Query: 68 RFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 +P+ P AL ++PTRELA Q + G+ VA+ IGG R+ R L +G Sbjct: 82 GAAPSGPPGAVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQARALLDG 141 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I+V TPGRL DH+ + + H +VLDEAD MLDLGF +D+ I P + + L+ Sbjct: 142 VDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLPVRHQTLL 201 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+SPAI+ L + +++ + I + + + + +++ +LR Sbjct: 202 FSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAASLLAVLRREAG 261 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ + + L AL G+ Q R L R GR V +ATDV Sbjct: 262 GRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLVLVATDVM 321 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ D+ LV++ ++ PE +HR GRT RAGR+G ++ Sbjct: 322 ARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTAL 362 >gi|162460883|ref|NP_001105372.1| eukaryotic initiation factor 4A [Zea mays] gi|2500522|sp|Q41741|IF4A_MAIZE RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase eIF4A gi|603190|gb|AAA82736.1| translation initiation factor eIF-4A [Zea mays] Length = 410 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 192/355 (54%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 56 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 109 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 110 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 169 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 170 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 229 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V + D + + + ++ +++F +TR V Sbjct: 230 KFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 289 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 290 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 349 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV+V PA Sbjct: 350 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDVQRFYNVTVEELPA 404 >gi|120599766|ref|YP_964340.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|120559859|gb|ABM25786.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] Length = 433 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 194/354 (54%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+S+ GY +T +Q+ + R +DVL SAQTG+GKT AF L + ++ Sbjct: 6 FSFSPEIL-RAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E + S L + PTRELA QV + V GGV + + + L+ Sbjct: 65 -EKPSETLKSNTRVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA ++V TPGRL +H+ +++S++ +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + V+ + S ++Q++ D + +V ++ + G Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG 240 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KN +VF +TR + K L + GE Q R AL+ G RV +A Sbjct: 241 KKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+P LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354 >gi|297581767|ref|ZP_06943689.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385] gi|297534174|gb|EFH73013.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385] Length = 438 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 121/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQVI + L ++G+V T +Q L L +D+ AQTG+GKT+AF A + LL Sbjct: 18 PQVI-DGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73 Query: 68 RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +PA + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ L Sbjct: 74 --TPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179 Q+G I++GT GR+ D + + N++H++AVVLDEAD M DLGF DI F+ PK Sbjct: 132 QSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT+S + LA + + V + E + I + + + ++ Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLI 251 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 AI+F +T+ + LA +V L+G++ Q++R L+ G + + Sbjct: 252 EEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILV 311 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|152977726|ref|YP_001343355.1| ATP-dependent RNA helicase RhlB [Actinobacillus succinogenes 130Z] gi|189040023|sp|A6VKC3|RHLB_ACTSZ RecName: Full=ATP-dependent RNA helicase rhlB gi|150839449|gb|ABR73420.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes 130Z] Length = 413 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 191/342 (55%), Gaps = 8/342 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQ++ AL+++ + T +Q L L+ KDV AQTG+GKT+AF A LL Sbjct: 18 PQILA-ALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHHLLTHQP 76 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 F + P AL +APTRELAVQ+ + E L T + +A+ GG ++ + ++NG I Sbjct: 77 DFI-TNQPRALILAPTRELAVQIAHDAESLAQTTKLRIALAYGGDGYDKQLKTIENGVDI 135 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMF 185 ++GT GR+ D+++ + + ++ VVLDEAD M DLGF DI ++L +PK R ++F Sbjct: 136 LIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPKSRLTMLF 195 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHG 243 SAT+S + LA D + I E Q + + L S+RD ++ +L Sbjct: 196 SATLSYKVRELAFEDMNDPEYIEI--EPLQKTGHRIKEELFYPSNRDKMALLMTLLEEEW 253 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + I+F +T+ LA +V L+G+++Q++R L+ DG + +ATDV Sbjct: 254 PERCIIFANTKHRCEEIWGYLAADGQRVGLLTGDVAQKKRLALLKQFTDGELDILVATDV 313 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +PD+ V + +L + E+ +HR GRTGRAG GMS+ Sbjct: 314 AARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGMSI 355 >gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 460 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T++Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|71734815|ref|YP_276470.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555368|gb|AAZ34579.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 450 Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P Sbjct: 23 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 82 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 83 V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 141 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 142 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 201 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 202 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 261 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 262 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 321 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 322 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 356 >gi|308272082|emb|CBX28690.1| ATP-dependent RNA helicase rhlE [uncultured Desulfobacterium sp.] Length = 398 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 193/343 (56%), Gaps = 6/343 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +++ G+V T +Q + + +D++ AQTG+GKT AF L + L+ + Sbjct: 7 NLNPDIEAGIADAGFVTPTPIQTKAIPLVMDGQDIMGLAQTGTGKTAAFVLPILHRLI-Q 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R S L IAPTRELA Q+ ++ L T + GGV+++ + + L+ GA Sbjct: 66 GKRGHVRS----LIIAPTRELAEQIHDDINTLGKDTRIRSVTVYGGVNINTQIQKLKRGA 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL DH+ K ++++ ++ +V+DEAD M D+GF DI IL P +R+ L+F Sbjct: 122 EIVVACPGRLLDHMTRKTIDLTRVEVLVIDEADHMFDMGFLPDIRRILKHLPAQRQTLLF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I +LAK+ KD + + + SE + + VA + ++ +L + +K Sbjct: 182 SATMPDEIKSLAKDILKDPITIKV-SETVPADTVSHAHYPVAQHLKTAFLLKLLEHINSK 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + +VF T+ + LA+ F+ +L G LSQ R AL R+GR +V +ATD+AA Sbjct: 241 SVLVFTRTKHRAKHLDEQLAKAGFRSASLQGNLSQVRRQAALDGFRNGRIQVLVATDIAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ + VI+ ++ P+ +HR GRTGRA + G + +I Sbjct: 301 RGIDVCKISHVINYDIPDTPDAYIHRIGRTGRADQSGDAFTLI 343 >gi|218889855|ref|YP_002438719.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58] gi|254236766|ref|ZP_04930089.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719] gi|254242553|ref|ZP_04935875.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192] gi|308154507|ref|NP_252550.3| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1] gi|32363412|sp|Q9HXE5|RHLB_PSEAE RecName: Full=ATP-dependent RNA helicase rhlB gi|122261039|sp|Q02S21|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase rhlB gi|226739542|sp|B7UUT0|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase rhlB gi|9950039|gb|AAG07248.1|AE004803_4 ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1] gi|115587113|gb|ABJ13128.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14] gi|126168697|gb|EAZ54208.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719] gi|126195931|gb|EAZ59994.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192] gi|218770078|emb|CAW25840.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58] Length = 397 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ + LL Sbjct: 15 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 74 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ Sbjct: 75 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 132 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 133 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 192 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT + + LAK + D V I EN ++ VA SD+ + N++ Sbjct: 193 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 252 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + + +VF + + V R + L + +SG++ Q +R L+ R+G+ RV + Sbjct: 253 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 312 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVA RGI + + VI+ L +P++ +HR GRTGRAG G S+ Sbjct: 313 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 358 >gi|254286224|ref|ZP_04961183.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226] gi|150423639|gb|EDN15581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226] Length = 438 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 187/341 (54%), Gaps = 4/341 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQVI + L ++G+V T +Q L L +D+ AQTG+GKT+AF A + LL + Sbjct: 18 PQVI-DGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTSA 76 Query: 68 RFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ LQ+G Sbjct: 77 AEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVD 136 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLM 184 I++GT GR+ D + + N++H++AVVLDEAD M DLGF DI F+ PK R ++ Sbjct: 137 ILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNML 196 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + LA + + V + E + I + + + ++ Sbjct: 197 FSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWP 256 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F +T+ + LA +V L+G++ Q++R L+ G + +ATDVA Sbjct: 257 DRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVA 316 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 317 ARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 7169] gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 46P47B1] gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 103P14B1] gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis BC1] gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis BC8] gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 101P30B1] gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis CO72] Length = 581 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 206/369 (55%), Gaps = 12/369 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL++ GY T +Q + L +D+L+SAQTGSGKT AF L + + + + + Sbjct: 29 ILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---SRKPT 85 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA+QV + + +V +GG + R L+ G +++ Sbjct: 86 IEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGVQVII 145 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+R +++S L ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M SAT Sbjct: 146 ATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATW 205 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI 248 A+ +A+++ + +V+I E+ + ID + ++N ++ +L K A+ Sbjct: 206 DGAVGKIAESFTVNPEKVSIKVES---AHIDESVYYCDDFNHKNNILLQVLNNPKIKQAV 262 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +T+ S + L E F+ L G+L Q +R+ + M+ G+ V +ATDVAARGI Sbjct: 263 IFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGI 322 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFREAN 364 D+ + VI+ +L E+ +HR GR GRAGR G++V + + R+ E L R+ + Sbjct: 323 DISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKRQMS 382 Query: 365 VSVVWEPAP 373 VS + P Sbjct: 383 VSTIEGLEP 391 >gi|302910116|ref|XP_003050220.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256731157|gb|EEU44507.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 407 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + AL Sbjct: 52 GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVINI------AVRETQAL 105 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L +G HIV GTPGR+ D Sbjct: 106 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHIVSGTPGRVADM 165 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 166 IRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 225 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V D + + + ++ A++FC+TR V Sbjct: 226 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 285 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ G++ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 286 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 345 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 346 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVR 382 >gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida W619] gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619] Length = 630 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 191/342 (55%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + +YA+ +V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G ++++H++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGRVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT LA + R+ + N I+ R + S + + +++ + Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H A+ G SQ R+ AL + RV +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQNARTKALADFKANSVRVLVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353 >gi|157876834|ref|XP_001686759.1| DEAD box RNA helicase [Leishmania major strain Friedlin] gi|68129834|emb|CAJ09140.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin] Length = 527 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/390 (32%), Positives = 210/390 (53%), Gaps = 12/390 (3%) Query: 2 KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F+++ Q + A ++ G+ + T +Q + + +D++ AQTGSGKT A+ L L Sbjct: 53 KTFQDLGLCQELCAACADAGWQHPTRIQASTITVFAEGRDLIGVAQTGSGKTGAYALPLV 112 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + LLA+ R +P + L + PTRELA QV + L G+ VA +GG + + Sbjct: 113 NWLLAQ--RKTPYLS--VLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQAC 168 Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +L H+VVGTPGR+ DH+ KG + L A+VLDEAD+MLD+ + +I+ IL+ P+ Sbjct: 169 ELSKRPHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMNYEKEIDAILEQLPQ 228 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 RR ++FSAT+S I L K +D V + + +N + + + + + Sbjct: 229 NRRTMLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + ++FC + A V + T L + + L G + Q R+ AL ++G+ R+ Sbjct: 289 LTKETGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRML 348 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 I TDVA RG+D+P ++V++ L + E+ +HR GRT RAG +G +V +I Q ++ Sbjct: 349 ICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQK 408 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ 388 + ++ V V P ++ E + Q +LQ Sbjct: 409 IEQQTGVKCVEYP-----SLPESEVQLVLQ 433 >gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88] Length = 485 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 189/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY + T +Q + L+ +D++ A+TGSGKT AF L + L+ + P Sbjct: 72 EACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNK-----PQ 126 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L +APTRELA Q+ E L + V AV +GG+ + + L HI+V TP Sbjct: 127 SL-FGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATP 185 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL P++RR +FSAT+S Sbjct: 186 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSS 245 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q ++ L + +D +V +L + ++AIVF Sbjct: 246 KVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVYLVYLLNEYAGQSAIVF 305 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 306 TRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDI 365 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ +L S+ + +HR GRT RAG+ G + ++ Q Sbjct: 366 PSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQ 405 >gi|114643645|ref|XP_001153882.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 398 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/314 (32%), Positives = 177/314 (56%), Gaps = 7/314 (2%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 +D++ A+TGSGKT AF L + + LL R AL + PTRELA Q+ + E L Sbjct: 5 RDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEAL 58 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDE 156 + GV AV +GG+ + L HI++ TPGRL DH+ KG N+ LK +V+DE Sbjct: 59 GSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 118 Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 AD +L++ F +++ IL P+ R+ +FSAT++ + L + K+ V+ ++S+ + Sbjct: 119 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTV 178 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 + + + +D +V IL + ++FCST + R +L F + L G Sbjct: 179 EKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHG 238 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 ++SQ +R +L + + +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT Sbjct: 239 QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA 298 Query: 337 RAGRKGMSVFVIPQ 350 RAGR G ++ + Q Sbjct: 299 RAGRSGKAITFVTQ 312 >gi|256827018|ref|YP_003150977.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641] gi|256583161|gb|ACU94295.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641] Length = 551 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/337 (34%), Positives = 183/337 (54%), Gaps = 11/337 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA---SAP 75 GY + T VQE + L +DV+ +A+TG+GKT AF L DR A P Sbjct: 22 GYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLPTM-------DRLGHARHGQGP 74 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 L L + PTRELA+Q+ + ++G V +GGVS + + L+ G +++ TPGRL Sbjct: 75 LLLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSYNPQIDSLRRGTDVLIATPGRL 134 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D + +++ ++ +VLDEAD MLD+GF D+ I+ + P +R+ L+FSATI AI Sbjct: 135 IDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQRQTLLFSATIDSAIED 194 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 + + V V IA I+ + V +++ ++ +L G IVF TR Sbjct: 195 NMAHLLNNPVFVEIAHRGETADTIEQYRIPVDHRHKNDLLIALLNERGGTRIIVFARTRH 254 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 V + L + F V + + SQ +R A++ + G+ + +ATDV ARGID+P++ Sbjct: 255 RVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVATDVLARGIDIPNVNY 314 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 V++ ++ E+ +HR GRTGRAG G ++ FV P+N Sbjct: 315 VVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPEN 351 >gi|161407972|ref|YP_270752.2| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H] Length = 417 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 198/339 (58%), Gaps = 8/339 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++++ GY TS+QE ++ + KDVL SA TG+GKT AF L +A LL + R P Sbjct: 14 SINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQHLL-DYPRTKPG- 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA+Q+G + E L T + V GGV+ L + I+V TPG Sbjct: 72 FPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SPA 192 RL ++I + + ++ +VLDEAD MLDLGF + I I+ + +++ ++FSAT+ SP Sbjct: 132 RLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTMLFSATLESPG 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKNAIVF 250 + A+ + V + + +R+ + ++ + +A + + N +VN L+ G + +VF Sbjct: 192 VQLFAEEVLNEPVFLE-SKPSRKEKAVIHQWLHLADDANHKLNLLVNTLKQEGVERTVVF 250 Query: 251 CSTRASVSRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 + R +V + K+ AE L V L G++ Q +R+ A++ + G +V +ATDVAARG+D Sbjct: 251 ANKRETVQYLSGKLYAEEL-PCVWLEGKMPQDKRNKAIERFKKGEVKVLVATDVAARGLD 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + D+ VI+ ++ + +HR GRTGRAG+KG ++ ++ Sbjct: 310 IDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLV 348 >gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39] gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39] Length = 464 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|332194953|gb|AEE33074.1| translation initiation factor 4A-2 [Arabidopsis thaliana] Length = 407 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 189/358 (52%), Gaps = 9/358 (2%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 RG+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D A Sbjct: 52 RGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD--YALLQCQA 105 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 106 LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 165 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 +R + L +K VLDEADEML GF+D I I P K ++ +FSAT+ P + Sbjct: 166 MLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 225 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256 + + VR+ + + I V V D + + ++ +++F +TR Sbjct: 226 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRK 285 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 V T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LV Sbjct: 286 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 345 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 I+ +L + PEN LHR GR+GR GRKG+++ + + QR + + NV V E PS Sbjct: 346 INFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVV--EELPS 401 >gi|225627526|ref|ZP_03785563.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo] gi|225617531|gb|EEH14576.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo] Length = 549 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 196/375 (52%), Gaps = 9/375 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I V+ + + G +Q + L +D+L AQTGSGKT AF L + ++ Sbjct: 108 ITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLG 167 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 D+ P +A AL +APTRELAVQ+ + + + + A+ +GGVS + + + G Sbjct: 168 DKRRPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGID 226 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL D +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FS Sbjct: 227 VLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFS 286 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I +LA+ +D VRV +A + S+I V ++ + +L ++ Sbjct: 287 ATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRS 346 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ + L + V A+ G SQ R AL RDG R+ +ATD+AAR Sbjct: 347 VIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAAR 406 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE 362 GID+P V++ + PE +HR GRTGR G G S+ + ++ R ER+ R Sbjct: 407 GIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRS 466 Query: 363 ----ANVSVVWEPAP 373 + V PAP Sbjct: 467 KLSIKDAPVKLAPAP 481 >gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR] Length = 485 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 190/342 (55%), Gaps = 8/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + EA GY + T +Q + L+ +D++ A+TGSGKT AF L + L+ + Sbjct: 70 LCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNK----- 124 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P S L +APTRELA Q+ E L + V AV +GG+ + + L HI+V Sbjct: 125 PQSL-FGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVA 183 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL P++RR +FSAT+ Sbjct: 184 TPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATM 243 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAKNAI 248 S + +L + + +RV+I+S Q ++ L + +D +V +L + ++AI Sbjct: 244 SSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVYLVYLLNEYAGQSAI 303 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T R +L F + L G+LSQ R AL R + +ATDVAARG+ Sbjct: 304 VFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGL 363 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 D+P +++V++ +L S+ + +HR GRT RAG+ G + ++ Q Sbjct: 364 DIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQ 405 >gi|124361137|gb|ABN09109.1| Helicase, C-terminal [Medicago truncatula] Length = 413 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/361 (33%), Positives = 193/361 (53%), Gaps = 7/361 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATF----CSGILQQLD--YSVTECQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 + +L + PEN LHR GR+GR GRKG+++ + + +R + + NV + P+ E Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQKFYNVLIEELPSNVAEL 412 Query: 378 I 378 + Sbjct: 413 L 413 >gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 484 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T++Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 39 ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 98 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 99 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 158 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 159 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 218 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 219 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 278 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 279 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 338 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 339 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 398 Query: 373 PSVE 376 P E Sbjct: 399 PGYE 402 >gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 [Homo sapiens] gi|76803555|sp|Q9NR30|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box protein 21; AltName: Full=Gu-alpha; AltName: Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar RNA helicase II; AltName: Full=RH II/Gu gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens] gi|55664208|emb|CAH72377.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens] gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo sapiens] gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct] Length = 783 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTRELA QV ++ + K + VA GG + + Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DHI+ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 484 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 583 >gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)] Length = 519 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 113/341 (33%), Positives = 191/341 (56%), Gaps = 7/341 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL+ GY + T +Q + P L +D+L+SAQTGSGKT AF L + ++ + Sbjct: 49 PELL-SALTSSGYEHPTPIQAQSIPPALAGRDLLLSAQTGSGKTAAFVLPMLDKIIRDK- 106 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAH 126 + + + PTRELA QV + +KT + +V +GG + R L G Sbjct: 107 --ATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALNKGVQ 164 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGR DH+ +++S L ++LDEAD MLD+GF DDIE ++ ++PK R+ +M S Sbjct: 165 IIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFADDIEKVMSAAPKSRQTIMCS 224 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT + +A ++ + R++I +E + + Y A + ++ + ++L Sbjct: 225 ATWDGPVGKIAASFTNNPERIDIKAETKHIDESVYYA--DDFNHKNRILDHLLTQKDVNQ 282 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+F +T+ S K L E + L G+L Q +R+ + ++ G+ + +ATDVAAR Sbjct: 283 AIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRTRIINDVKAGKISILVATDVAAR 342 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 GID+ + V + +L E+ +HR GR+GRAGR G+++ + Sbjct: 343 GIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINI 383 >gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica] Length = 451 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/371 (31%), Positives = 212/371 (57%), Gaps = 15/371 (4%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA-LAIAP 82 T +Q+ + + KDV+ A+TGSGKT AF + + TLL +P L+ L + P Sbjct: 48 TPIQQKSIPIAIEGKDVIGLAETGSGKTAAFAIPVLQTLLK-----TPGGGRLSCLVMTP 102 Query: 83 TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RG 141 TRELA Q+ + + L + G+ A +GG+ + ++ L H++V TPGRL DH+ + Sbjct: 103 TRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAKKPHVIVATPGRLVDHLEKT 162 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201 +G N+ LK +++DEAD +L+L F +++ IL + P++R+ ++FSAT++ + L + Sbjct: 163 RGFNLKALKFLIMDEADRILNLDFEAEVDKILRAIPRERQTMLFSATMTAKVKKLQRAAL 222 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 K+ V+++I S+ + + + + + ++ +V++L + ++F ST A S Sbjct: 223 KNPVKISINSKYKTVDKNIQKYMFIPEAHKECYLVSLLNELQGSSFMIFTSTCAKTSLIA 282 Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321 +++ + V L G++SQQ+R AL + + + TDVA+RG+D+P ++ VI+ ++ Sbjct: 283 RLVKRLGYDSVPLHGQMSQQKRLGALARFKGKSRSILVCTDVASRGLDVPHVDCVINYDV 342 Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS----VEA 377 +N ++ +HR GRT RAGR G SV + Q +++ EA++ + P V A Sbjct: 343 PTNTKDYIHRVGRTARAGRAGKSVTFVSQYDVELYQKI--EAHIGKKLDQWPCEKDEVMA 400 Query: 378 IRER--DAQRI 386 ++ER +A+RI Sbjct: 401 LKERVDEAKRI 411 >gi|322420867|ref|YP_004200090.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp. M18] gi|320127254|gb|ADW14814.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18] Length = 467 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 186/345 (53%), Gaps = 9/345 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY+ T +Q + P + +DVL AQTG+GKT AFGL + L+ E R AL Sbjct: 20 GYLTPTPIQLQAIPPVMAGQDVLGLAQTGTGKTAAFGLPVLHRLV-EGGR----GQVRAL 74 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ L L +T + GGV+++ + + L+ G IVV PGRL DH Sbjct: 75 VLAPTRELAEQINESLNALAQQTRLKSITVYGGVNINTQIKKLKEGTDIVVACPGRLLDH 134 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I +N+S ++ +VLDEAD+M D+GF D+ IL + P KR+ LMFSAT+ I LA Sbjct: 135 ISQGTVNLSKVEVLVLDEADQMFDMGFLPDVRKILRALPGKRQNLMFSATMPDDIRRLAH 194 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 V V + S + + + V + + +L++ ++ ++F T+ Sbjct: 195 EILCRPVTVQV-SRTAPAATVSHALYPVGQHLKTPLLFELLKHTDTESVLIFTKTKHRAK 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 R + L + ++ +L G LSQ R AL RDG ++ +ATD+AARGID+ + VI+ Sbjct: 254 RVGEQLEKSGYKATSLQGNLSQNRRQAALDGFRDGTYQIMVATDIAARGIDVSLISHVIN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360 ++ PE HR GRTGRA + G + ++ + M R ER+ Sbjct: 314 YDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTGEDEAMVRSIERVL 358 >gi|226943260|ref|YP_002798333.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ] gi|226718187|gb|ACO77358.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ] Length = 521 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 188/338 (55%), Gaps = 8/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70 A+ + G+ T +Q +L L+ +D + AQTG+GKT AF +++ S LL +R+ Sbjct: 147 AIHDVGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISIISQLLQTPPPKERY- 205 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129 P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ I+V Sbjct: 206 -MGEPRALIIAPTRELVVQIAKDALALTRYTGLNVMSFVGGMDFDKQLKQLEEKFCDILV 264 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187 TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K R+ L+FSA Sbjct: 265 ATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPYKGERQTLLFSA 324 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T + + LAK + D V I E+ ++ VA SD+ + N++ + + Sbjct: 325 TFTEDVMNLAKQWTVDPAIVEIEPEHVASDSVEQHVYAVAGSDKYRLLYNLVTRNNWERV 384 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF + + V R + L + +SG++ Q +R L+ R+GR RV +ATDVA RG Sbjct: 385 MVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIKVLEGFREGRIRVLVATDVAGRG 444 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 I + + VI+ L +P++ +HR GRTGRAG KG S+ Sbjct: 445 IHVEGVSHVINYTLPEDPDDYVHRIGRTGRAGSKGTSI 482 >gi|219110339|ref|XP_002176921.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411456|gb|EEC51384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 529 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 9/360 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P+ + + + G+ T +Q L+ ++++ + TGSGKT+AF L A + Sbjct: 136 SMPEYVLNEVLKCGFDKPTPIQSQGWPMALKGRNMVGVSATGSGKTLAFLLP-AMIHINA 194 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P P+ L +APTRELAVQ+ E + + + + V GGV H + R+L+ GA Sbjct: 195 QPYLKPGDGPIVLVLAPTRELAVQIKEECDKFGSSSEIKNTVVYGGVKKHTQLRELRAGA 254 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I + TPGRL DH+ N+ + +VLDEAD MLD+GF + I+ R++LM+ Sbjct: 255 EICIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMW 314 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY---- 241 SAT + LA +Y +D +V + S + ++ D ++ +D D N+ RY Sbjct: 315 SATWPKEVQALANDYLQDFYQVTVGSLDLS-ANKDVTQIIEVCTDMDK-YRNLQRYLREN 372 Query: 242 -HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +VF T+ T+ L FQ A+ G+ SQ+ER AL+ + ++ + +A Sbjct: 373 LSPKDRVLVFVETKKGCDMLTRSLRSDGFQARAMHGDKSQEERDWALREFKGMQSTLLVA 432 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359 TDVAARG+D+ D+ +V++ + ++ +HR GRTGRAG+KG +V F +P R A L Sbjct: 433 TDVAARGLDVDDIRIVVNFDFPKEMDSYIHRVGRTGRAGKKGFAVSFFVPDKNARLAREL 492 >gi|205277319|ref|NP_001034520.2| vasa RNA helicase [Tribolium castaneum] gi|270011102|gb|EFA07550.1| vasa [Tribolium castaneum] Length = 627 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/351 (33%), Positives = 191/351 (54%), Gaps = 11/351 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71 E + + GY T++Q+ + L +D++ AQTGSGKT AF L + LL+ D+ P Sbjct: 219 ENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLS--DKNPPN 276 Query: 72 ----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + P+ + ++PTRELA+Q+ + + + V VAV GG S + +R + G HI Sbjct: 277 TENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHI 336 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPK--KRRML 183 +V TPGRL D + ++ + LK VLDEAD MLD+GF D+E +L S P +R+ L Sbjct: 337 LVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTL 396 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT + LA + + + + + +D++ + V+ D+ + +V+IL Sbjct: 397 MFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDKRSKLVSILEKAP 456 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F T+ + L+E Q ++ G+ Q ER AL + G +V +AT V Sbjct: 457 NERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGV 516 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 AARG+D+ D++ VI+ +L + + +HR GRTGR G KG + ++ R Sbjct: 517 AARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDEDQDR 567 >gi|166713488|ref|ZP_02244695.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 460 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T++Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|298488858|ref|ZP_07006883.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156611|gb|EFH97706.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 442 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|1230564|gb|AAB02546.1| Gu protein [Homo sapiens] Length = 801 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 206 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 265 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTRELA QV ++ + K + VA GG + + Sbjct: 266 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 323 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DHI+ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 324 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 383 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 384 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 443 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 444 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 502 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 503 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 562 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 563 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 601 >gi|195614644|gb|ACG29152.1| ATP-dependent RNA helicase DDX41 [Zea mays] Length = 618 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/353 (34%), Positives = 181/353 (51%), Gaps = 9/353 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + L ERG V T +Q L L +D++ A T SGKT+ F L L L E Sbjct: 180 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTRSGKTLVFVLPLIMVALQEE 239 Query: 67 DRFS--PASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRER 118 P P + I P+RELA Q +E + +CIGGV + + Sbjct: 240 SLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGVDMRTQL 299 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ G HIVV TPGRL D + K +N+ + + + LDEAD ++DLGF DDI+ + D Sbjct: 300 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 359 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AKN V VN+ + D+ V R ++ Sbjct: 360 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 419 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ ++FC +A V + L + VA+ G Q+ER NA+ + GR V Sbjct: 420 LQ-KTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 478 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +ATDVA++G+D PD++ VI+ ++ + EN +HR GRTGR G+ G++ I +N Sbjct: 479 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 531 >gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2] gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2] Length = 464 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|77166069|ref|YP_344594.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707] gi|76884383|gb|ABA59064.1| ATP-dependent RNA helicase CsdA [Nitrosococcus oceani ATCC 19707] Length = 500 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 125/381 (32%), Positives = 203/381 (53%), Gaps = 15/381 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71 +A+ + GY T +Q + L D++ AQTG+GKT AF + L L++ + Sbjct: 21 QAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTLERLELSQKE---- 76 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P L + PTRELA+QV + YA+ V GG S+ + R L+ GAH++V Sbjct: 77 ---PQVLVLVPTRELAIQVAEAFQS-YARYLEDFHVLPIYGGQSMGNQLRQLKRGAHVIV 132 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGR+ DH+R K L ++ L V+LDEADEML +GF +D+E+IL P KR++ +FSAT+ Sbjct: 133 GTPGRIMDHLRRKSLILTKLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQVALFSATM 192 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 ++ +A + + + I E I+ R LV+ + +A+ +L I+ Sbjct: 193 PTSVRNIASRHLQAPQDIKIKGETASLPAINQRYWLVSGLHKLDALTRMLEAEEYDATII 252 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + K L + AL+G++ Q R + ++ + +ATDVAARG+D Sbjct: 253 FVRTKIATEELAKKLMARGYAAAALNGDIPQSSREKVVDQLKKNTIDIIVATDVAARGLD 312 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAERLFREANVSVV 368 + + V++ ++ + +HR GRTGRAGR G ++FV P+ +RR + A + Sbjct: 313 VKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPR--ERRMLSAIKRATGQPL 370 Query: 369 WE-PAPSVEAIRERDAQRILQ 388 +E PS + + +R +R Q Sbjct: 371 YEMQLPSHQQVIDRRIERFKQ 391 >gi|328884859|emb|CCA58098.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712] Length = 874 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/323 (36%), Positives = 177/323 (54%), Gaps = 16/323 (4%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVG 91 DV+ A+TG+GKT+ FGL + + D R P AP AL + PTREL QV Sbjct: 11 DVIGQAKTGTGKTLGFGLPILERVTVPTDVEAGRAKPEQLTDAPQALVVVPTRELCQQVT 70 Query: 92 RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151 +L V V GG + + L+ G ++VGTPGRL D + L++SH+K Sbjct: 71 NDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHVKV 130 Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 +VLDEADEMLDLGF D+E I++ P KR+ ++FSAT+ A+ LA+ Y + S Sbjct: 131 LVLDEADEMLDLGFLPDVEKIINMLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATS 190 Query: 212 ENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265 + + + + YRA + D+ + IL+ +G A++FC T+ + + + L Sbjct: 191 PDGEGATVANIKQHVYRAHNM---DKPEMVSRILQANGRGLAMIFCRTKRTAADIAEQLE 247 Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325 F A+ G+L Q R AL+ R+G+ V + TDVAARGID+ + VI+ + + Sbjct: 248 RRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDE 307 Query: 326 ENLLHRSGRTGRAGRKGMSVFVI 348 + LHR GRTGRAG KG +V ++ Sbjct: 308 KTFLHRVGRTGRAGNKGTAVTLV 330 >gi|307721103|ref|YP_003892243.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979196|gb|ADN09231.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica DSM 16294] Length = 415 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/368 (29%), Positives = 198/368 (53%), Gaps = 6/368 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + L ++G+ T +QE ++ L KDV+ AQTGSGK+ +F L L + Sbjct: 7 NLSSTLQKTLQDKGFKKPTPIQEKVIPLVLNNKDVIAQAQTGSGKSASFVLPLLQLWSQK 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWL---YAKTGVVVAVCIGGVSVHRERRDLQ 122 D + L + PTREL +QV E AK +V++ IGG S+ + ++Q Sbjct: 67 RDNAKKGKIKI-LVLTPTRELTLQVAEVFEEFSKDLAKKPQIVSL-IGGESIGEQLYNIQ 124 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G ++V T GR D ++ K +N+SHL +VLDEAD+ML+ F ++++ +L+S P KR+ Sbjct: 125 QGCDVLVATSGRFLDVLKKKQMNLSHLNYLVLDEADKMLNFDFTEELDLVLESLPAKRQN 184 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT P + L + + V I + +I R + V R + ++L+ H Sbjct: 185 LLFSATYPPKMLDLVSKIMSNPLHVTI-EQKPTVENIRQRVIEVDNEKRGPLLRHLLKEH 243 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K +VF + + + + ++ + + + +L Q R++ LQ ++ + V ATD Sbjct: 244 KYKRVLVFMANKRATDNIAEKFRKYGIEAASFNADLEQDIRNDTLQAFKEAKINVLFATD 303 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 +AARG+D+ +++ +I+ +L +P + +HR GRT RAG+ G ++ I Q + + + Sbjct: 304 IAARGLDIDNIDCIINYDLPRSPADYIHRIGRTARAGKSGEAISFINHETQEHFKLIEKR 363 Query: 363 ANVSVVWE 370 +++ + E Sbjct: 364 SHIKLTRE 371 >gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 460 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T++Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii C735 delta SOWgp] gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii C735 delta SOWgp] Length = 474 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 188/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + P Sbjct: 61 EACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDK-----PQ 115 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L +APTRELA Q+ ++ E L + V AV +GG+ + + L HI+V TP Sbjct: 116 SM-FGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATP 174 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +V+DEAD +LDL F ++ IL PK+RR +FSAT+S Sbjct: 175 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSS 234 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+++S Q S + +++ +D ++ +L ++ I+F Sbjct: 235 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIF 294 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 295 TRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDI 354 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P ++LV++ +L S+ + +HR GRT RAG+ G + ++ Q Sbjct: 355 PSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQ 394 >gi|154308886|ref|XP_001553778.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10] gi|160385734|sp|A6S4N4|FAL1_BOTFB RecName: Full=ATP-dependent RNA helicase fal1 gi|150852597|gb|EDN27789.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10] Length = 399 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 185/337 (54%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 97 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 98 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 157 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 158 IRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 217 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V D + + + ++ A++FC+TR V Sbjct: 218 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 277 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 278 DWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 337 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L N EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 338 NYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374 >gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group] gi|75325411|sp|Q6Z4K6|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName: Full=OsPL10b gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group] gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group] gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group] Length = 638 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 203/379 (53%), Gaps = 22/379 (5%) Query: 11 IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63 +G+AL+E YV T VQ + + +D++ AQTGSGKT AF + S ++ Sbjct: 176 LGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMRSR 235 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 R S + PLAL ++PTREL+VQ+ E +TGV V V GG + ++ R+L+ Sbjct: 236 PPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELE 295 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK- 178 G I+V TPGRL D + +++ +K + LDEAD MLD+GF I I +D P+ Sbjct: 296 RGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 355 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT I +A ++ D + + + I R V +D+ + ++++ Sbjct: 356 ERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMDL 415 Query: 239 LR------YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 L HG + +VF T+ L + F ++ G+ +QQER AL+ + Sbjct: 416 LHAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFK 475 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 G + +ATDVAARG+D+P + VI+ +L ++ ++ +HR GRTGRAG+ G++ ++ Sbjct: 476 SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNES 535 Query: 352 ---MQRRAERLFREANVSV 367 + R L +EAN V Sbjct: 536 NTPLARPLSELMQEANQEV 554 >gi|146292298|ref|YP_001182722.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|145563988|gb|ABP74923.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] gi|319425598|gb|ADV53672.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 433 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 196/354 (55%), Gaps = 8/354 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F P+++ A+S+ GY +T +Q+ + R +DVL SAQTG+GKT AF L + ++ Sbjct: 6 FSFSPEIL-RAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + ++A + L + PTRELA QV + V GGV + + + L+ Sbjct: 65 EKPSETLKSNARV-LILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLKR 123 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 GA ++V TPGRL +H+ +++S++ +VLDEAD MLD+GF DI+ IL + KKR+ L Sbjct: 124 GADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT S A+ LA + V+ + S ++Q++ D + +V ++ + G Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG 240 Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 KN +VF +TR + K L + GE Q R AL+ G RV +A Sbjct: 241 KKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLVA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 T+VAARG+D+P LE V++ +L E+ +HR GRTGRAG+ G+++ + + +R Sbjct: 301 TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354 >gi|297817166|ref|XP_002876466.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp. lyrata] gi|297322304|gb|EFH52725.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp. lyrata] Length = 608 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/366 (33%), Positives = 198/366 (54%), Gaps = 20/366 (5%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSPASAP 75 YV T VQ + L ++D++ AQTGSGKT AF + S ++ + R S P Sbjct: 169 YVRPTPVQRHAIPILLGQRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYP 228 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 LA+ ++PTRELA Q+ E + +TGV V V GG ++++ R+L+ G I+V TPGRL Sbjct: 229 LAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRL 288 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFSATISP 191 D + +++ +K + LDEAD MLD+GF I I +D P+ +R+ ++FSAT Sbjct: 289 NDLLERARVSMQRIKFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGERQTMLFSATFPR 348 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN----- 246 I LA ++ + + + + I R V SD+ + ++++L H + Sbjct: 349 EIQRLAADFMSNYIFLAVGRVGSSTDLITQRIEFVQESDKRSHLMDLL--HAQRETQDKQ 406 Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ L + F ++ G+ +QQER AL+ + GR + +ATDVA Sbjct: 407 SLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKSGRTPILVATDVA 466 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361 ARG+D+P + V++ +L ++ ++ +HR GRTGRAG+ G++ +N M R L + Sbjct: 467 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQMARLLAELMQ 526 Query: 362 EANVSV 367 EAN V Sbjct: 527 EANQEV 532 >gi|330987668|gb|EGH85771.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 442 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis BC7] Length = 581 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 206/369 (55%), Gaps = 12/369 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL++ GY T +Q + L +D+L+SAQTGSGKT AF L + + + + + Sbjct: 29 ILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---SRKPT 85 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA+QV + + +V +GG + R L+ G +++ Sbjct: 86 IEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGVQVII 145 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+R +++S L ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M SAT Sbjct: 146 ATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATW 205 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI 248 A+ +A+++ + +V+I E+ + ID + ++N ++ +L K A+ Sbjct: 206 DGAVGKIAESFTVNPEKVSIKVES---AHIDESVYYCDDFNHKNNILLQVLNNPKIKQAV 262 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +T+ S + L E F+ L G+L Q +R+ + M+ G+ V +ATDVAARGI Sbjct: 263 IFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGI 322 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFREAN 364 D+ + VI+ +L E+ +HR GR GRAGR G++V + + R+ E L R+ + Sbjct: 323 DISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKRQMS 382 Query: 365 VSVVWEPAP 373 VS + P Sbjct: 383 VSTIEGLEP 391 >gi|159478699|ref|XP_001697438.1| predicted protein [Chlamydomonas reinhardtii] gi|158274317|gb|EDP00100.1| predicted protein [Chlamydomonas reinhardtii] Length = 515 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 181/346 (52%), Gaps = 13/346 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++ + + Y T +Q L L +D+L A+TGSGKT +F + + L + Sbjct: 122 PNIVAD-IQHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPMIQHCLNQQP 180 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGA 125 P+AL +APTRELA Q+ RE++ +G V ++ +GGV +H +R DL+NG Sbjct: 181 -LRAGDGPMALVLAPTRELAQQIEREVKAFSRSSGRSVRTSIVVGGVPMHEQRHDLRNGV 239 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VV TPGR DH++ N+ + VVLDEAD MLD+GF I+ ++++ P K + L+F Sbjct: 240 EVVVATPGRFIDHLQQGNTNLGRISYVVLDEADRMLDMGFEPQIKEVMNNLPPKHQTLLF 299 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA+ Y V V I + + +++ R + + +V ++ A Sbjct: 300 SATMPKEIEELARAYLNKPVTVKIGAVSTPTANVSQRLEHAPEPQKLDILVALISAEVAA 359 Query: 246 N---------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 IVF + L E AL G L+Q ER AL+ G + Sbjct: 360 EAAGGPPMPLTIVFVERKTRCDEVAAALREDGINANALHGGLNQNEREAALRDFAKGDIK 419 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 V +ATDVA+RG+D+ + VI+ +L E+ +HR GRTGRAG KG Sbjct: 420 VLVATDVASRGLDIKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKG 465 >gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium dendrobatidis JAM81] Length = 764 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 136/435 (31%), Positives = 223/435 (51%), Gaps = 40/435 (9%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR---- 68 E+L RG V L +Q A +P ++ D+L A+TG+GKT+AF L + L E + Sbjct: 154 ESLKARGIVQLFPIQAASFDPIIKGMDLLGRARTGTGKTLAFSLPMIEVLKRERESNRHL 213 Query: 69 FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAH 126 FS AP L +APTRELA+QV RE + + +G + + C GG + +++G Sbjct: 214 FSQRGRAPRVLIMAPTRELAMQVHREFDSI--SSGELKSTCAYGGSPYDSQCNAMRDGID 271 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR------ 180 ++VGTPGRL DHI L ++ L+ + LDEAD+MLD+GF + +E IL +++ Sbjct: 272 VIVGTPGRLIDHIERGTLKLNQLRFICLDEADQMLDIGFAESMEKILQQVQEQKSKLTDA 331 Query: 181 ---RMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNA-- 234 ++L+FSAT+ I Y K + V +++ ++Q + + +A ++ + Sbjct: 332 PDHQVLLFSATMPVWIKQAVSKYMKPNKVTLDLIGTDKQKTSATVKHYAIASHWQNRSAL 391 Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 IV I GA I+F T+ + L G++ Q++R +Q R Sbjct: 392 LGDIVAIYGRGGAGRTIIFVETKGEANELAMNDKLVTMGTQVLHGDIQQKQREVTMQGFR 451 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G+ I T+V ARG+D+P+++LVI+ E S+ E+ +HRSGRTGRAG+ G+ V N Sbjct: 452 EGKFTSLITTNVCARGVDIPEVDLVINCEPPSDVESYIHRSGRTGRAGKSGICVTFYKPN 511 Query: 352 MQRRAERLFREANVSVVWEPAP------------SVEAIRERDAQRILQDPL-----FLD 394 + + + R A V+ + AP ++E ++ +R+L+ L+ Sbjct: 512 QEYALQNIARHAGVNFIKIGAPQPKDIVAARASDTLETVKTDLDERVLEYFTNCAGDILE 571 Query: 395 SIQGDEKKMVDVLLA 409 QGD K + LA Sbjct: 572 HFQGDAIKALSATLA 586 >gi|320322648|gb|EFW78741.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. glycinea str. B076] Length = 442 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|46446899|ref|YP_008264.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|46400540|emb|CAF23989.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 407 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/343 (32%), Positives = 184/343 (53%), Gaps = 6/343 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ +I +AL + + + +Q + +++D++ +QTGSGKT + + + + E Sbjct: 21 NLDPLILKALDKMNFKEPSRIQTEAIPLIQKKQDLIALSQTGSGKTATCAIPICNRVNTE 80 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 AL I PTRELA+Q E + + GV GG ++ L++G Sbjct: 81 LTDIQ------ALIIVPTRELALQYATETQKIGKYKGVKAFAIFGGEDSALQQSKLKHGV 134 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL D I + +++SH++ ++LDEADEML +GF DD+ FI+ + L+F Sbjct: 135 QVLVATPGRLIDFIYSRQIDLSHVETLILDEADEMLSMGFYDDLVFIIQCLNHSHQTLLF 194 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ AI LAK++ KD VN+ E +++ V RD+ ++ +++ + Sbjct: 195 SATMPAAIQRLAKHHMKDPQEVNLILEQASPHLLEHCFVYCLAHQRDHELIQLIKENNPT 254 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 AI+FC +R V + + L HL V L L+Q R+ R G+ R+ +ATD+ A Sbjct: 255 QAIIFCQSRFQVEKVCRTLQSHLDGVDFLHAGLNQDIRTIVTNKFRTGKIRLLVATDIVA 314 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RG+D + V +LS + +HRSGRTGR G+ G+ + ++ Sbjct: 315 RGLDFSKVSHVFIYQLSHESDVYVHRSGRTGRYGKTGVVISLV 357 >gi|257482171|ref|ZP_05636212.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 442 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4] gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4] Length = 534 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 186/349 (53%), Gaps = 19/349 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL------ASTLLAEND 67 AL E G ++QE L L D++ A+TG GKT FG+ L +T A D Sbjct: 52 ALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALD 111 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELE----WLYAKTG--VVVAVCIGGVSVHRERRDL 121 P AL I PTREL +QV ++LE +L + + V GG + L Sbjct: 112 -----GTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKPLEVLAIYGGRPYETQIATL 166 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 Q GA +VVGTPGRL D L + ++ +VLDEADEMLDLGF DIE IL+ P KR+ Sbjct: 167 QKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILNMVPDKRQ 226 Query: 182 MLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 ++FSAT+ I TLA+ + Q +R A ++ H D+ + +L Sbjct: 227 TMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYRAHALDKAEMVARVL 286 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G ++F T+ + + + LAE F V ++ G+L+Q R AL+ R G+ V + Sbjct: 287 QADGRGATMIFTRTKRTAQKVSDELAERGFAVGSVHGDLNQVAREKALKAFRSGKIDVLV 346 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ATDVAARGID+ D+ VI+ + + + +HR GRTGRAGR G++V ++ Sbjct: 347 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLV 395 >gi|224142804|ref|XP_002324737.1| predicted protein [Populus trichocarpa] gi|118481206|gb|ABK92554.1| unknown [Populus trichocarpa] gi|222866171|gb|EEF03302.1| predicted protein [Populus trichocarpa] Length = 413 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 190/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YDVVECQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV+V E PS Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNVTV--EELPS 407 >gi|91789374|ref|YP_550326.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] gi|91698599|gb|ABE45428.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666] Length = 579 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 182/342 (53%), Gaps = 6/342 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE----N 66 I +A+ E+GY T +Q + L D+L AQTG+GKT AF L + L E N Sbjct: 12 ILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPMLQRLSTEPRLTN 71 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R +A AL + PTRELA QV + + V GGV + + L+ G Sbjct: 72 RRG--VNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQIDKLRRGVD 129 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL DH L++S ++ +VLDEAD MLD+GF DI+ +L PK ++ L+FS Sbjct: 130 ILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVPKHKQSLLFS 189 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LA +D + + + N I V S + + +I+ H Sbjct: 190 ATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLTHIINEHNWSQ 249 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ + + L ++ + +AL G SQ R+ ALQ +DG R +ATD+AAR Sbjct: 250 VLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIRALVATDIAAR 309 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 GID+ +L V++ E+ + E+ +HR GRTGRAG G +V ++ Sbjct: 310 GIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLV 351 >gi|71145379|gb|AAZ25852.1| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H] Length = 430 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 198/339 (58%), Gaps = 8/339 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++++ GY TS+QE ++ + KDVL SA TG+GKT AF L +A LL + R P Sbjct: 27 SINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQHLL-DYPRTKPG- 84 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA+Q+G + E L T + V GGV+ L + I+V TPG Sbjct: 85 FPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVATPG 144 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SPA 192 RL ++I + + ++ +VLDEAD MLDLGF + I I+ + +++ ++FSAT+ SP Sbjct: 145 RLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTMLFSATLESPG 204 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKNAIVF 250 + A+ + V + + +R+ + ++ + +A + + N +VN L+ G + +VF Sbjct: 205 VQLFAEEVLNEPVFLE-SKPSRKEKAVIHQWLHLADDANHKLNLLVNTLKQEGVERTVVF 263 Query: 251 CSTRASVSRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 + R +V + K+ AE L V L G++ Q +R+ A++ + G +V +ATDVAARG+D Sbjct: 264 ANKRETVQYLSGKLYAEEL-PCVWLEGKMPQDKRNKAIERFKKGEVKVLVATDVAARGLD 322 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + D+ VI+ ++ + +HR GRTGRAG+KG ++ ++ Sbjct: 323 IDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLV 361 >gi|326772300|ref|ZP_08231585.1| ATP-dependent RNA helicase [Actinomyces viscosus C505] gi|326638433|gb|EGE39334.1| ATP-dependent RNA helicase [Actinomyces viscosus C505] Length = 540 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/352 (34%), Positives = 189/352 (53%), Gaps = 5/352 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG+ +Q A L L +DVL +TGSGKT+AF L L L A+ D+ P Sbjct: 38 LDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQRL-AQQDKARPGH- 95 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P+ L +APTRELA+Q+ +E L + V GGVS + + L+ G +VV PGR Sbjct: 96 PIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGR 155 Query: 135 LCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 L D + G+GL ++ ++ VLDEAD M DLGF ++ IL ++P++ + L+FSAT+ + Sbjct: 156 LLD-LMGQGLVSLDEVEITVLDEADHMADLGFLPNVRRILRATPQRGQRLLFSATLDNGV 214 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TL K + D ++ ++ + +R +VA + IV L G I+F T Sbjct: 215 DTLVKEFLHDPLQHSVDPSTSPVDAMTHRVWMVADKTAKDGIVRRL-ASGEGQRILFTRT 273 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R + L + V L G +SQ R A++ G+ V +ATD+AARGID+ + Sbjct: 274 KHLARRLARKLVQAGIPAVELQGNMSQNARERAMRAFSTGQVHVMVATDIAARGIDVSGV 333 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 ELV+H + + + LHRSGRT RAG G + ++ + + L ++A + Sbjct: 334 ELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVLLKKARI 385 >gi|254509500|ref|ZP_05121567.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium KLH11] gi|221533211|gb|EEE36199.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium KLH11] Length = 419 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 180/335 (53%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +AL + T +Q + L D+L AQTG+GKT+AFGL L LLA+ + + Sbjct: 13 LNDALKRANFTQPTPIQNQAIPLALNGHDILGLAQTGTGKTLAFGLPLIDHLLAQPGKPA 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P +A AL +APTREL Q+ L L KT + VA +GG S++++ L G I+V Sbjct: 73 PKTAK-ALILAPTRELVNQIADSLRGLTKKTKLRVATVVGGQSINKQIMFLSRGTDILVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + +++S ++ +VLDEAD+MLD+GF + I R+ ++FSAT+ Sbjct: 132 TPGRLIDLMERGAVDLSSVRHLVLDEADQMLDMGFIHALRRIAPELGTPRQTMLFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L++ Y + RV ++ + I V + + IL +VF Sbjct: 192 KQMEELSRAYLTNPQRVQVSPPGKAADKITQSIHFVEKPAKPAKLREILSADMDALTLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K L + ++ G SQ +R A++ R G + +ATDVAARGID+ Sbjct: 252 SRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINILVATDVAARGIDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 P + VI+ +L P+N +HR GRT RAGR+G ++ Sbjct: 312 PGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAI 346 >gi|262273976|ref|ZP_06051788.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886] gi|262221786|gb|EEY73099.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886] Length = 441 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/337 (35%), Positives = 190/337 (56%), Gaps = 6/337 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T VQ + + KD+L S++TGSGKT+AF L ++ + FS S P + Sbjct: 20 GFDTPTDVQASAIPVVCAGKDLLASSKTGSGKTLAFLLPALQRVM-RSKAFS-RSGPRVV 77 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTREL QV EL L A T + +GG + + + ++ + +V TPGRL DH Sbjct: 78 VLAPTRELVKQVYGELRKLLAGTQFKGMLILGGENFNDQAKEFRKNPAFIVATPGRLADH 137 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS-PAITTL 196 + + L++ L+ ++LDEAD MLDLGF ++ I ++ +RR LMFSAT+ + + Sbjct: 138 LEHRHLSLEGLELLILDEADRMLDLGFAPQLKAINSAANHRRRQTLMFSATLDHQQVNEI 197 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRA 255 A + KD RV I N +H DI+ R L D A+++ ++ + ++F +TRA Sbjct: 198 AADMLKDPKRVAIGFVNEEHKDIEQRFFLCDHLDHKQALLDRVMEQESYQQVMIFTATRA 257 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 R E + VALSG+LSQ R+ + G +V + TDVA+RG+D+ ++ Sbjct: 258 DTDRLATWFVERGIKAVALSGDLSQSARNRIMNEFERGLHKVLVTTDVASRGLDISNVSH 317 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 V++ ++ + E +HR GRTGRAG KG+++ FV P++ Sbjct: 318 VVNFDMPKHAEEYVHRIGRTGRAGNKGIAISFVGPKD 354 >gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587] gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587] Length = 464 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -AYQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|94498002|ref|ZP_01304566.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58] gi|94422585|gb|EAT07622.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58] Length = 459 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/371 (32%), Positives = 193/371 (52%), Gaps = 3/371 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +ALS + Y T +Q+ + L+ D+ AQTG+GKT AF L + A N + + Sbjct: 12 ILKALSAKKYTAPTPIQQKAIPVLLQGHDLCGIAQTGTGKTAAFALP-SLDYFARNPKPT 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P L ++PTRELA Q+ + + V GGV ++R+ + L G IVV Sbjct: 71 PVRGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVETVFGGVPINRQIKALSQGVDIVVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D I + I + VLDEAD+M+D+GF ++ + P R+ L FSAT+ Sbjct: 131 TPGRLLDLIDQRCFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKLLPTDRQNLFFSATMP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + D V+V++A ++ + +A V +++ + +L A++F Sbjct: 191 KEIEALAGQFLNDPVKVSVAPQSTTAERVRQQATFVNQAEKQALLHIVLETEDIDRALIF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ R + L A+ G SQ +R+ ALQ R G+ ++ +ATD+AARGID+ Sbjct: 251 TRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKVKLLVATDIAARGIDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 + VI+ E+ + PE +HR GRT RAG +G+++ + + + + + R V + Sbjct: 311 SGVSHVINFEIPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIERATRVKLDVA 370 Query: 371 PAPS--VEAIR 379 P P +EA+R Sbjct: 371 PLPENFLEAVR 381 >gi|261758239|ref|ZP_06001948.1| ATP-dependent RNA helicase [Brucella sp. F5/99] gi|261738223|gb|EEY26219.1| ATP-dependent RNA helicase [Brucella sp. F5/99] Length = 462 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 191/363 (52%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 33 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 92 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P V++ Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 331 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 + PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 332 YDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391 Query: 371 PAP 373 PAP Sbjct: 392 PAP 394 >gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704] gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704] Length = 472 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 187/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L+ +DV+ A+TGSGKT AF L + L+ + P Sbjct: 59 EACESLGYKAPTQIQAESIPLALQGRDVIGLAETGSGKTAAFALPILQALMDK-----PQ 113 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L +APTRELA Q+ ++E L + V AV +GG+ + + L HI+V TP Sbjct: 114 SM-FGLVLAPTRELAYQISEQVEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATP 172 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL PK+RR +FSAT+S Sbjct: 173 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSS 232 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q + + + + +D V +L ++ IVF Sbjct: 233 KVESLQRASLSNPLRVSISSNKYQTVATLLQNYLFIPHKYKDIYFVYLLNEFPGQSVIVF 292 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 293 TRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDI 352 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P ++LV++ +L S+ + +HR GRT RAG+ G + ++ Q Sbjct: 353 PSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLVTQ 392 >gi|189425337|ref|YP_001952514.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ] gi|189421596|gb|ACD95994.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ] Length = 452 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 114/349 (32%), Positives = 196/349 (56%), Gaps = 14/349 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + + + + G+ T +Q L L KDV AQTG+GKT AF + L + LLA Sbjct: 7 SLPAQVLQGIHQAGFNACTPIQAQTLPLSLSGKDVAGQAQTGTGKTAAFLITLFTKLLA- 65 Query: 66 NDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 SP++A P AL +APTREL VQ+ ++ + L + G + GG+ +++ Sbjct: 66 ----SPSAAADGSLPRPRALILAPTRELVVQIEKDAQLLGSHCGFNIQAIYGGIDYMKQK 121 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L++GA IV+GTPGRL D+++ K ++ H++ +V+DEAD M D+GF D+ +IL P Sbjct: 122 NALKDGADIVIGTPGRLIDYLKQKVYSLKHIEMLVIDEADRMFDMGFIPDLRYILRRLPP 181 Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 +R+ LMFSAT++ + L+ + +V++ E ++ V+ ++ ++ Sbjct: 182 FDQRQNLMFSATLNQRVMELSYEFMNVPQKVSVTPEKMTAERVEQVLYHVSNKEKFPLLL 241 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +LR G ++F +T+ R L + F +SG++ Q++R N L+ + G Sbjct: 242 GLLRREGMARTMLFVNTKREAERLQDRLNANEFPCRVISGDVDQRKRMNILEQFKRGELA 301 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + IATDVA+RG+ + + VI+ +L + E+ +HR GRT RAG +G ++ Sbjct: 302 ILIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAI 350 >gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS] gi|118595828|sp|Q1E1N5|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3 Length = 474 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 188/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + P Sbjct: 61 EACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDK-----PQ 115 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L +APTRELA Q+ ++ E L + V AV +GG+ + + L HI+V TP Sbjct: 116 SM-FGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATP 174 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +V+DEAD +LDL F ++ IL PK+RR +FSAT+S Sbjct: 175 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSS 234 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+++S Q S + +++ +D ++ +L ++ I+F Sbjct: 235 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIF 294 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 295 TRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDI 354 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P ++LV++ +L S+ + +HR GRT RAG+ G + ++ Q Sbjct: 355 PSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQ 394 >gi|296121937|ref|YP_003629715.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM 3776] gi|296014277|gb|ADG67516.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM 3776] Length = 395 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 9/326 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ G+ + +Q A + L KDV+ A+TGSGKT AF L + + AE Sbjct: 20 AVNKMGFATPSPIQAAFVPLALSGKDVIGQARTGSGKTAAFVLPILERVDAEK------G 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTREL+ Q+ E L K + C+GG ++ + DL+ GA +V+GTPG Sbjct: 74 YPQALVLTPTRELSQQIAEEASRLSLKHPLRSVCCVGGRNIRPQITDLKKGAQLVIGTPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D ++ L+ S LK VVLDEAD MLD+GFR DIE IL P +R+ L+ SAT+ + Sbjct: 134 RIIDLMQRGELDTSRLKMVVLDEADRMLDIGFRPDIERILRKCPTERQTLLLSATLPAPV 193 Query: 194 TTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 LA+ Y D RV+++ + Q+S + V V + ++ +L + +VF Sbjct: 194 ARLAQKYMNDPERVDVSHIGADSQNSITQF-YVPVDQDRKFRTLIRVLSQEKPQQVLVFT 252 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + + L ++ + G+LSQ R L RDGR R+ IATDV RGID+ Sbjct: 253 RTKRGAEEVYRKFSGRLPRIGFIHGDLSQNLREGVLSRFRDGRLRLLIATDVMGRGIDIS 312 Query: 312 DLELVIHAELSSNPENLLHRSGRTGR 337 + +++ ++ + ++ +HR GRTGR Sbjct: 313 GISHIVNYDVPMDCDDYVHRIGRTGR 338 >gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 455 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 182/345 (52%), Gaps = 2/345 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 + Q I +AL+ + V+ ++Q L L +D++ A+TG GKT+ FG+ + + + Sbjct: 14 GVAQEITDALATQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDRIFDD 73 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D P AL + PTREL VQVG +L V V GG + + L++G Sbjct: 74 ADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKALKDGT 133 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D L + ++ +VLDEADEMLDLGF IE I+ + + ++F Sbjct: 134 DLVVGTPGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIEKIIAGITAEHQTMLF 193 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHG 243 SAT+ AI LA+ + V + ++ + V+ D+ I +L+ G Sbjct: 194 SATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVLQARG 253 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ S + + LA FQV ++ G++SQ R +LQ RDG + +ATDV Sbjct: 254 RGRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDILVATDV 313 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ D+ VI+ + + +HR GRTGRAG G +V ++ Sbjct: 314 AARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLV 358 >gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group] Length = 639 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 203/379 (53%), Gaps = 22/379 (5%) Query: 11 IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63 +G+AL+E YV T VQ + + +D++ AQTGSGKT AF + S ++ Sbjct: 177 LGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMRSR 236 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 R S + PLAL ++PTREL+VQ+ E +TGV V V GG + ++ R+L+ Sbjct: 237 PPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELE 296 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK- 178 G I+V TPGRL D + +++ +K + LDEAD MLD+GF I I +D P+ Sbjct: 297 RGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 356 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT I +A ++ D + + + I R V +D+ + ++++ Sbjct: 357 ERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMDL 416 Query: 239 LR------YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 L HG + +VF T+ L + F ++ G+ +QQER AL+ + Sbjct: 417 LHAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFK 476 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 G + +ATDVAARG+D+P + VI+ +L ++ ++ +HR GRTGRAG+ G++ ++ Sbjct: 477 SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNES 536 Query: 352 ---MQRRAERLFREANVSV 367 + R L +EAN V Sbjct: 537 NTPLARPLSELMQEANQEV 555 >gi|331011364|gb|EGH91420.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 442 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +D++ +AQTG+GKT F L L L E + +P Sbjct: 15 ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIGVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01] gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01] Length = 531 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 183/340 (53%), Gaps = 2/340 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I +A+ +GY + +QE + L KDV+ +AQTG+GKT F L + +L++ R Sbjct: 10 EPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE-MLSKGPR 68 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL + PTRELA QV + + V GGV ++ + + L+ G+ ++ Sbjct: 69 VRQNQV-RALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSDVL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + L+ +VLDEAD MLD+GF DI IL PKKR+ L+FSAT Sbjct: 128 VATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LAK + V ++++ N ++ V + + +++ + + + Sbjct: 188 FSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKSAMLAKLIKDNDWRQVL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ + L E + G SQ R+ AL+ + G+ RV +ATD+AARGI Sbjct: 248 VFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGI 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+P L V++ +L + E+ +HR GRTGRAG G ++ ++ Sbjct: 308 DIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347 >gi|15601523|ref|NP_233154.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121590875|ref|ZP_01678199.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80] gi|121728661|ref|ZP_01681679.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V52] gi|147671636|ref|YP_001215545.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395] gi|153818645|ref|ZP_01971312.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457] gi|153820657|ref|ZP_01973324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae B33] gi|229506074|ref|ZP_04395583.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286] gi|229510069|ref|ZP_04399549.1| ATP-dependent RNA helicase [Vibrio cholerae B33] gi|229605606|ref|YP_002876310.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236] gi|254849928|ref|ZP_05239278.1| ATP-dependent RNA helicase [Vibrio cholerae MO10] gi|255746472|ref|ZP_05420419.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101] gi|262152368|ref|ZP_06028501.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1] gi|262168609|ref|ZP_06036305.1| ATP-dependent RNA helicase [Vibrio cholerae RC27] gi|9658191|gb|AAF96666.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547282|gb|EAX57403.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80] gi|121629072|gb|EAX61518.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae V52] gi|126510798|gb|EAZ73392.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457] gi|126521700|gb|EAZ78923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae B33] gi|146314019|gb|ABQ18559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae O395] gi|227015171|gb|ACP11380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395] gi|229352514|gb|EEO17454.1| ATP-dependent RNA helicase [Vibrio cholerae B33] gi|229356425|gb|EEO21343.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286] gi|229372092|gb|ACQ62514.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236] gi|254845633|gb|EET24047.1| ATP-dependent RNA helicase [Vibrio cholerae MO10] gi|255736226|gb|EET91624.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101] gi|262023138|gb|EEY41843.1| ATP-dependent RNA helicase [Vibrio cholerae RC27] gi|262030819|gb|EEY49450.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1] Length = 422 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 7/368 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPAS 73 LSE G N T +Q+ + L+ KDVL AQTG+GKT AFGL L + + R + + Sbjct: 21 LSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSK 80 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QV L+ T + + GG S+ + L+ G I++ TPG Sbjct: 81 EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPG 140 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT I Sbjct: 141 RLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKI 200 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +A +D + V + N + V + + ++ + +VF T Sbjct: 201 KAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKT 260 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ L Sbjct: 261 RQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQL 320 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV----- 368 E V++ ++ E+ +HR GRTGRAG G++V ++ + Q + E + R N + Sbjct: 321 EQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLK 380 Query: 369 -WEPAPSV 375 +EP+P V Sbjct: 381 GFEPSPVV 388 >gi|293376696|ref|ZP_06622919.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909] gi|325845185|ref|ZP_08168493.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1] gi|292644653|gb|EFF62740.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909] gi|325488781|gb|EGC91182.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1] Length = 368 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 114/343 (33%), Positives = 186/343 (54%), Gaps = 13/343 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71 + L + G + T +QE KDV+ AQTG+GKT+AF L L + SP Sbjct: 14 QVLKKSGITSPTPIQEQCYPLIKNYKDVIAQAQTGTGKTLAFLLPLFENI-------SPD 66 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL I PTRELA+Q+ E L + V GG ++ + L+ H+++ T Sbjct: 67 IEATQALIITPTRELALQITEEANKLAEIRNINVLAAYGGRNIGSQLNKLKKSIHLIIAT 126 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+ + + + +K+VV+DEAD+ML +GFR++++ IL +P+ R+ L FSAT++P Sbjct: 127 PGRLIDHLERQTITLDKVKSVVIDEADQMLLMGFRNEVDQILRQTPRNRQTLCFSATMAP 186 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249 + LA Y D + I ++ I + LV +DR +A+ +L AI+ Sbjct: 187 NVKRLAYRYSYDPTMITIEAKKVAVESI--KQELVETTDRWKADALCQVLEEDNPFLAII 244 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC T+ + + + F + +++Q +R L+ R+ + IATDVA+RG+D Sbjct: 245 FCRTKRRADQLFAKMKQRGFNTQVIHSDIAQNKRERILKSFREADLQYLIATDVASRGLD 304 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351 + + + + ++ PE +HR GRTGRAG +G + +FV P++ Sbjct: 305 ISGVTHIYNYDIPETPETYIHRIGRTGRAGEEGYTCLFVAPKD 347 >gi|255657870|ref|ZP_05403279.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544] gi|260850060|gb|EEX70067.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544] Length = 441 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/352 (33%), Positives = 192/352 (54%), Gaps = 12/352 (3%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57 M F+ I + + L G T VQE + P +R D +V AQTG+GKT+AF Sbjct: 1 MTTFQELGIRPALCDVLRSHGIKEATPVQEKAM-PLVRAGHDCIVKAQTGTGKTLAF--- 56 Query: 58 LASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 LL ++ P A+ AL I PTRELA+Q+ + + L A + V GG + R Sbjct: 57 ----LLPIIEKIKPQAAVTQALVITPTRELAIQIAKVAQSLSAAADISSLVIFGGQDIER 112 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 +++ L+ +++GTPGRL DH+R + +++S + VVLDEADEM+ LGF +D+E +L+++ Sbjct: 113 QKQKLRRHPQLIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLEAT 172 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 R++++FSAT+ + L+ Y + I SE+ ID + + + + Sbjct: 173 AADRQLMLFSATMPDRVKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDTREETKIDKLC 232 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 I+ A+VFC T+ T LA + V L G+LSQ +R+ L+ R + Sbjct: 233 EIINQEQPYLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQ 292 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + ATD+AARG+D+ + V + ++ + E+ +HR GRTGRAG +G ++ + Sbjct: 293 ILCATDIAARGLDIEGVTHVFNYDIPHDAESYIHRIGRTGRAGERGKAITFV 344 >gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp. MWYL1] gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1] Length = 463 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 185/339 (54%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69 I +A+ ++GY +++Q + L +DV+ +AQTG+GKT F L L L EN + Sbjct: 16 ILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLLEILSKGENAQS 75 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + A L + PTRELA QV ++ + V GGV ++ + L+ GA I++ Sbjct: 76 NQVRA---LVLTPTRELAAQVAESVKNYGQHLSLKSTVVFGGVKINPQMMALRRGADILI 132 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGR+ D K + L+ +VLDEAD MLD+GF DI+ IL PKKR+ L+FSAT Sbjct: 133 ATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQNLLFSATF 192 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 SP I LAK + + +++ N ++ V + ++ ++ A+V Sbjct: 193 SPEIRQLAKGLVNNPIEISVTPRNATAVSVEQWLHPVDKKRKTELLIQLIADGRWDQALV 252 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ ++ TK L + + A+ G SQ R+ AL ++GR R+ +ATD+AARG+D Sbjct: 253 FSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALADFKEGRIRILVATDIAARGLD 312 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 313 IEQLPHVVNFDLPDVAEDYVHRIGRTGRAGATGKAISLV 351 >gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170] Length = 799 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 6/342 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E GY T +Q + +DVL AQTG+GKT +F L + L + + A Sbjct: 15 AIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMIDILASGKAK---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L +APTRELA QV LY K + +A+ IGG S++ +++ L G +++ TP Sbjct: 72 MPRSLILAPTRELATQVSENF-TLYGKYQKLSMALLIGGESMNEQQKVLDRGVDVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + +K +V+DEAD MLD+GF D+E I+ PK R+ L FSAT+ Sbjct: 131 GRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQTLFFSATMDKE 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + V I + ++ ++V S++ A+ +LR NA +FC+ Sbjct: 191 IRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRRETVTNAFIFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + V K L+ H F ++AL G++ Q R+ L+ + ++ + +DVAARGID+ + Sbjct: 251 RKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCSDVAARGIDVTE 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 + V + ++ ++PE+ +HR GRTGRAGR G + P++ + Sbjct: 311 VSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAK 352 >gi|119510127|ref|ZP_01629266.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414] gi|119465188|gb|EAW46086.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414] Length = 437 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 184/339 (54%), Gaps = 4/339 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--RFSP 71 A++E+GY T +Q + L D+L AQTG+GKT F L + L ++ + S Sbjct: 15 AVTEQGYTEPTPIQMQAIPAVLSGSDLLAGAQTGTGKTAGFTLPMLHRLSSDKNVKSTSH 74 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129 +P+ AL + PTRELA QV + + V GGVS++ ++R L+ G I+V Sbjct: 75 GYSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKRLLKEGRVDILV 134 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ +N+SH++ +VLDEAD MLD+GF DI IL PK+R+ L+F AT Sbjct: 135 STPGRLLDHVQQGTVNLSHIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLLFFATF 194 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA + +A N + + V + + +++R +V Sbjct: 195 SEKIKALAAGLLNRPKMIEVARRNVTADTVTQKVYKVDRDKKRQLLAHLIRQDNWYQVLV 254 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ R K L E Q +A+ G SQ R++ L ++ +V +ATD+AARG+D Sbjct: 255 FTRTKYGADRLVKQLGEERIQALAIHGNKSQSSRTHTLAKFKNNSLQVLVATDIAARGLD 314 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + +L V++ +L + E+ +HR GRTGRAG G ++ ++ Sbjct: 315 ISELPHVVNFDLPNVAEDYVHRIGRTGRAGASGEAISLV 353 >gi|118580947|ref|YP_902197.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503657|gb|ABL00140.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM 2379] Length = 436 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 125/341 (36%), Positives = 179/341 (52%), Gaps = 3/341 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ +GY N T +Q + D+L AQTG+GKT AF L + +L EN Sbjct: 15 AIAAQGYTNPTPIQTGAIPAIFEGCDLLAGAQTGTGKTAAFALPIVQ-MLGENIPPDKRR 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV ++ + + + GGV++ + L G IVV TPG Sbjct: 74 RPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIERLHRGVDIVVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH +N+S +K +VLDEAD MLDLGF D I + P KR+ L+FSAT S +I Sbjct: 134 RLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIHKVAQYLPVKRQTLLFSATYSQSI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCS 252 LA R+ +A N +D +AV R +++ L G N + VF Sbjct: 194 KQLADELLNQPRRIEVARRN-IAADAVTQAVYQIERSRKREMLSFLIRTGRWNQVLVFAR 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + T+ L + A+ SQ R+ L + G RV +ATDVAARG+D+ Sbjct: 253 TRYGADKLTEELLLDGIKASAIHSNKSQSLRTRTLAEFKRGEFRVLVATDVAARGLDIER 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 L V++ +L PE+ +HR GRTGRAG G+++ ++ + Q Sbjct: 313 LPHVVNYDLPQVPEDYVHRIGRTGRAGEDGVALSLVSREEQ 353 >gi|321479177|gb|EFX90133.1| hypothetical protein DAPPUDRAFT_300157 [Daphnia pulex] Length = 404 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 109/328 (33%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +++ +L + L Sbjct: 50 GFEKPSAIQQRAIAPVIKGRDVIAQAQSGTGKTATFSISILQSLEIQ------TRETQIL 103 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ + + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 104 VLSPTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDVRKLDYGQHIVSGTPGRVFDM 163 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 164 IRRRTLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTS 223 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 224 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 283 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER ++ R+G++RV I TDV ARGID+ + LVI Sbjct: 284 DWLTEKMREANFTVSSMHGDMPQKERDTIMKEFRNGQSRVLITTDVWARGIDVQQVSLVI 343 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 344 NYDLPNNRELYIHRIGRSGRFGRKGVAI 371 >gi|226228176|ref|YP_002762282.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27] gi|226091367|dbj|BAH39812.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27] Length = 374 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/330 (33%), Positives = 179/330 (54%), Gaps = 6/330 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + GY T +Q + L +D++ AQTG+GKT +F L + LL R Sbjct: 14 DALHDAGYERPTPIQREAIPLALLGRDLIGLAQTGTGKTASFTLPVVHRLLGGPRRTR-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTREL +QV + +++ V V GGV + + L+ G +VV TP Sbjct: 72 ----VLVLTPTRELCLQVEESVRKYSSRSPVDVIPVYGGVGYEPQEKALRRGVDVVVATP 127 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ + ++ ++L+ +VLDEAD MLD+GF I I+D P+ R+ L+FSAT+ P Sbjct: 128 GRLLDHLEKRNVDFTYLETLVLDEADRMLDMGFAPQINRIVDQIPRYRQTLLFSATMPPE 187 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L + Y + V V + + + + + V ++ +V++L ++ +VF Sbjct: 188 VEALGRKYLRKPVVVQVGRRSSAATTVTHAVYPVPRHRKNELLVHLLTNSDHESVLVFTR 247 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T++ R LA+ A+ + SQ+ER AL+ + G+ RV +ATD+A RG+D+ Sbjct: 248 TKSGADRVVSDLAQAKIHAGAMHADKSQRERIQALEDFKSGKLRVLVATDIAQRGLDISG 307 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + VI+ ++ PE+ +HR GRTGRA G Sbjct: 308 ITHVINFDVPQQPEDYVHRIGRTGRAASTG 337 >gi|255961279|ref|YP_346703.3| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf0-1] gi|77381201|gb|ABA72714.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1] Length = 492 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 193/348 (55%), Gaps = 9/348 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ A+ + G+ T +Q +L L KD + AQTG+GKT AF +++ + LL Sbjct: 107 FKLAPELM-HAIHDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLL 165 Query: 64 ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + Sbjct: 166 QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 223 Query: 121 LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 224 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 283 Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ L+FSAT + + LAK + D V I N + +++ VA +D+ + N Sbjct: 284 SERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEVTNVANENVEQHIYAVAGADKYKLLFN 343 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ +G + IVF + + V R + L LSG++ Q +R L+ R+G+ RV Sbjct: 344 LVNDNGWERVIVFANRKDEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGKIRV 403 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVA RGI + + VI+ L P++ +HR GRTGRAG G+S+ Sbjct: 404 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 451 >gi|333024583|ref|ZP_08452647.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071] gi|332744435|gb|EGJ74876.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071] Length = 527 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/315 (37%), Positives = 177/315 (56%), Gaps = 10/315 (3%) Query: 44 AQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVGRELEW 96 A+TG+GKT+ FGL L + D R +P + AP AL + PTREL QV +L+ Sbjct: 5 AKTGTGKTLGFGLPLLERVTVAADVEAGRATPDKLSEAPQALVVVPTRELCTQVTNDLQT 64 Query: 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156 V V GG + + L+ G +VVGTPGRL D + L++S ++A+VLDE Sbjct: 65 AGKVRDVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRALVLDE 124 Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 ADEMLDLGF D+E I+ P KR+ ++FSAT+ A+ +LA+ Y +N S + + Sbjct: 125 ADEMLDLGFLPDVEKIVAMLPVKRQTMLFSATMPGAVVSLARRYMSQPTHINATSPDDEG 184 Query: 217 SDI--DYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273 + + + V A S D+ + IL+ G ++FC T+ + + ++ L F A Sbjct: 185 ATVANTEQHVFRAHSMDKPEMVARILQAEGRGLVMIFCRTKRTAADISEQLQRRGFAAGA 244 Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333 + G+L Q R AL+ R+G+ V + TDVAARGID+ + VI+ + + + LHR G Sbjct: 245 VHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIG 304 Query: 334 RTGRAGRKGMSVFVI 348 RTGRAGR G +V ++ Sbjct: 305 RTGRAGRSGTAVTLV 319 >gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80] gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80] Length = 464 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVMNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|68464953|ref|XP_723554.1| hypothetical protein CaO19.4870 [Candida albicans SC5314] gi|74656726|sp|Q5APT8|DBP3_CANAL RecName: Full=ATP-dependent RNA helicase DBP3 gi|46445590|gb|EAL04858.1| hypothetical protein CaO19.4870 [Candida albicans SC5314] Length = 564 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 114/318 (35%), Positives = 185/318 (58%), Gaps = 13/318 (4%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L KDV+ A+TGSGKT AFG+ + ++ + + + L I+PTRELA+Q+ L Sbjct: 188 LSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLS----VLCISPTRELALQIYDNL 243 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 L A +GV GGVS + R ++ A++VV TPGRL D I +N+ + +VL Sbjct: 244 IELTADSGVNCVAVYGGVSKDDQIRKIKT-ANVVVATPGRLVDLINDGAINLGKVNYLVL 302 Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213 DEAD ML+ GF +DI+ I+ ++S +R+ LMF+AT + LA N+ V+V + + Sbjct: 303 DEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRD 362 Query: 214 RQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA-----IVFCSTRASVSRFTKVLAE 266 ++ V+ ++ D++ ++ +LR + A + ++F + SR L Sbjct: 363 ELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKR 422 Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326 + F V A+ G+LSQQ+R+ AL + G++ + +ATDVAARG+D+P++++VI+ E Sbjct: 423 NRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIE 482 Query: 327 NLLHRSGRTGRAGRKGMS 344 + +HR GRTGRAG KG + Sbjct: 483 DYVHRIGRTGRAGAKGTA 500 >gi|307104817|gb|EFN53069.1| eukaryotic initiation factor 4A (ATP-dependent RNA helicase eIF4A) [Chlorella variabilis] Length = 410 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 193/370 (52%), Gaps = 9/370 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P + DV+ AQ+G+GKT F + L Sbjct: 43 NLHENLLRGIYAYGFEKPSAIQQKGIVPFGKGLDVIQQAQSGTGKTATFCAGILQNL--- 99 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ AL +APTRELA Q+ + + L V C+GG SV + R LQ+G Sbjct: 100 --DYTLVECQ-ALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDTRILQSGV 156 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ D +R + L +K VLDEADEML GF+D I I P K ++ +F Sbjct: 157 HVVVGTPGRVYDMLRRRALRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 216 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ P + + + VR+ + + I V V D + + + ++ Sbjct: 217 SATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAI 276 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +++F +TR V T + E V A G++ Q R ++ R G +RV I TD+ Sbjct: 277 TQSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLL 336 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ + LVI+ +L +NPEN LHR GR+GR GRKG+++ + + +R + + R N Sbjct: 337 ARGIDVQQVSLVINYDLPNNPENYLHRIGRSGRFGRKGVAINFVTNDDERLLQDIQRFYN 396 Query: 365 VSVVWEPAPS 374 V E PS Sbjct: 397 --TVIEELPS 404 >gi|238920509|ref|YP_002934024.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146] gi|238870078|gb|ACR69789.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146] Length = 440 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 193/371 (52%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q+ + L+ +D++ SAQTG+GKT F L L LL +N + Sbjct: 15 AVEEQGYREPTPIQQQAIPVVLQRRDLMASAQTGTGKTAGFTLPLLQ-LLHQNPKSGKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TP Sbjct: 74 RPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMMKLRGGVDVLVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + V +A N + LV + + ++ + +VF Sbjct: 194 IKALAASLLHNPAEVEVARRNTASELVTQHVHLVDKKRKRELLSFLIGTRDWRQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 254 TKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + + Sbjct: 314 LPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDIERLLKRPIPRMAI 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 AGYEPDPSIKA 384 >gi|332141363|ref|YP_004427101.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551385|gb|AEA98103.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 441 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 113/337 (33%), Positives = 189/337 (56%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + LT +QE + P ++ KD++ S++TGSGKT AF + + L+A+ + Sbjct: 16 LESKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRLMAQ--KALSRQD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P AL +APTRELA QV E + + + ++ +GG + + + + L+ HI+VGT GR Sbjct: 74 PRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKALRRNPHIIVGTAGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI-SPA 192 + DH+ K + ++ L+ ++ DEAD MLDLGF ++ I D + +KR+ ++FSAT+ + Sbjct: 134 VADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKRQTMLFSATLDNIE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNAIVFC 251 + + K AVRV + +H DI+ + D + I+ L AIVF Sbjct: 194 LKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFADNVDNKDQILQFELANRTYNQAIVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR R +L E + +AL G++ Q +R+ + G+ + + TD+A+RG+DL Sbjct: 254 ATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQHSILVTTDLASRGLDLS 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + LV++ +L N + +HR GRTGRAG+KG + +I Sbjct: 314 KVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLI 350 >gi|289424994|ref|ZP_06426773.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187] gi|289427671|ref|ZP_06429383.1| DEAD/DEAH box helicase [Propionibacterium acnes J165] gi|289154693|gb|EFD03379.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187] gi|289159162|gb|EFD07354.1| DEAD/DEAH box helicase [Propionibacterium acnes J165] gi|332676187|gb|AEE73003.1| DEAD-box ATP-dependent RNA helicase 3 [Propionibacterium acnes 266] Length = 700 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 195/365 (53%), Gaps = 11/365 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295 Query: 65 -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 296 REDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKR 349 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + L Sbjct: 350 GVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRL 409 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ A+ L + Y + V + + + + + A + ++ + I G Sbjct: 410 LFSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRSG 469 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATDV Sbjct: 470 --HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDV 527 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+A Sbjct: 528 AARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQA 587 Query: 364 NVSVV 368 V V Sbjct: 588 GVKPV 592 >gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus] Length = 621 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 187/340 (55%), Gaps = 10/340 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ FS Sbjct: 198 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGAAASCFSE 257 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GGVS + RDL G +++ GT Sbjct: 258 MQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGHQIRDLLRGCNVLCGT 317 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + ++ ++ +VLDEAD MLD+GF D+ ++ S S + R+ LMFS Sbjct: 318 PGRLLDMIGRGK-VGLTKVRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 376 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I LA ++ K D + + + SD++ V V + ++++L+ G++ Sbjct: 377 ATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKREQLIDLLKSTGSE 436 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ +L + F ++ G+ Q +R AL R G+ V +AT V A Sbjct: 437 RTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDFRSGKCSVLVATSVGA 496 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+PD++ V++ +L +N + +HR GRTGR G G +V Sbjct: 497 RGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 536 >gi|168236748|ref|ZP_02661806.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735725|ref|YP_002113911.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711227|gb|ACF90448.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290147|gb|EDY29504.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 453 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|332534579|ref|ZP_08410414.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505] gi|332035999|gb|EGI72478.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505] Length = 442 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/337 (34%), Positives = 188/337 (55%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ +G T +Q + L D+ ++TGSGKT+AF L ++ + + Sbjct: 16 LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV +L L A T + +GG + + + + L+N VV TPGR Sbjct: 74 PRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKILGGENFNDQIKALRNDPQFVVATPGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA- 192 L DHI + L +S L+ ++ DEAD +LDLGF + ++ I + + + R+ L+FSAT+ A Sbjct: 134 LADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMINEQANHRLRQTLLFSATLDHAQ 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251 + L++N K ++ +++ N QHSDI L D A++ + L I+F Sbjct: 194 VDALSRNLLKKPKQITLSAANEQHSDIKQTLYLADHLDHKEALLEHFLNQDDVGQCIIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR+ SR ++ L F+ VAL+G+L+Q +R + + ++ I TDVA+RG+DL Sbjct: 254 ATRSDTSRLSEALNAKGFKSVALAGDLTQNKRLDIMDSFSRENFKILITTDVASRGLDLL 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + VI+ +L + E +HR GRTGRAG KG ++ ++ Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLV 350 >gi|311109370|ref|YP_003982223.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans A8] gi|310764059|gb|ADP19508.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans A8] Length = 590 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/382 (33%), Positives = 205/382 (53%), Gaps = 28/382 (7%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FEN+ P ++ A+ E G+ T VQ + + L D++VS+QTGSGKT AF L Sbjct: 3 FENLGLAPALL-SAVQEAGFSTPTPVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPALH 61 Query: 61 TLLAENDRFSPASAPLA---LAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIG 110 + PA+ + L + PTRELA+QV GR+L L A +G Sbjct: 62 RIAQ-----MPANKGVGVQVLVLTPTRELALQVTDATATYGRKLADLR------TATVVG 110 Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170 G+ + + L ++V TPGRL DH+ + ++ + +VLDEAD MLD+GF +DIE Sbjct: 111 GMPYGAQLKALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIE 170 Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--L 228 I+ P+ R+ L+FSAT+ I LA +D R+ +A +H++I +++L A Sbjct: 171 TIVGRLPEDRQTLLFSATLDGTIAKLAARMMRDPQRIEMAGAKEKHTNI-TQSLLYADDA 229 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 S + + ++LR AIVF ST+ LA+ F AL G+++Q++R+ L Sbjct: 230 SHKMQLLDHVLRDAALDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLS 289 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ G+ R+ +ATDVAARGID+ + ++ +L E+ +HR GRTGRAGR G++ + Sbjct: 290 QLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRSGLAFTLA 349 Query: 349 PQNMQRRAERLFREANVSVVWE 370 + + + R+ S+ E Sbjct: 350 THSERHKVRRIEHYIGQSITPE 371 >gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 443 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/346 (37%), Positives = 193/346 (55%), Gaps = 14/346 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+G ++QE L L D++ A+TG GKT+AFG+ L + + A + Sbjct: 24 ALAEKGIERPFAIQELTLPLALAGDDLIGQARTGMGKTLAFGVPLLNRITAGVGVRALNG 83 Query: 74 APLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVC--IGGVSVHRERRDLQNGAHI 127 P AL + PTREL +QV +L ++L A+ ++V GG + L+ GA + Sbjct: 84 TPRALVVVPTRELCLQVHGDLSDAAKYLKAEGDRPLSVVSIYGGRPYEPQIEALRAGADV 143 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGRL D + L + L +VLDEADEMLDLGF DIE IL P++R+ ++FSA Sbjct: 144 VVGTPGRLLDLSQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERILRQIPEERQSMLFSA 203 Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYH 242 T+ I TLA+ + Q +R H + YRA + D+ + IL+ Sbjct: 204 TMPGPIITLARTFMNQPTHIRAEAPHSAATHDTTEQFVYRAHAL---DKVEMVSRILQAE 260 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G ++F T+ + + LAE F+V A+ G+L Q R AL+ R+G V +ATD Sbjct: 261 GRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQIAREKALKAFRNGDIDVLVATD 320 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ D+ VI+ ++ + + +HR GRTGRAG+ G++V ++ Sbjct: 321 VAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTLV 366 >gi|56460599|ref|YP_155880.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] gi|56179609|gb|AAV82331.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR] Length = 372 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/335 (37%), Positives = 183/335 (54%), Gaps = 2/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ALS +GY T +Q + L KDV+ +AQTG+GKT AF L LL N+R + A+ Sbjct: 15 ALSRQGYSESTPIQAEAIPLVLAGKDVMAAAQTGTGKTTAFTAPLLE-LLKSNER-AKAN 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QVG + L A + AV GGV ++ + L+ G I+V TPG Sbjct: 73 TARVLILTPTRELAAQVGENVANLSAGLPLNYAVAFGGVKINPQMMKLRKGVDILVATPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + L+ +VLDEAD MLD+GF DI+ I+ P KR+ L+FSAT S I Sbjct: 133 RLLDLYKQNAVRFPKLEVLVLDEADRMLDMGFIHDIKNIIKLLPAKRQTLLFSATFSDDI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LAK K V +++A N I+ V S + ++ +L+ +VF T Sbjct: 193 RALAKGLLKSPVEISVALPNATAEPIEQTLYEVQKSQKLGLLLKLLKSLDLPQVLVFSRT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R K L + F A+ SQ R+ AL + + ++ IATD+A+RGID+ L Sbjct: 253 KQGANRLVKQLDKAGFSAAAIHSAKSQGARTKALADFKSAKVQMLIATDIASRGIDIEKL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VI+ +L E+ +HR GRTGRAG+ G ++ ++ Sbjct: 313 PYVINYDLPHVAEDYIHRIGRTGRAGQTGHAISLV 347 >gi|75908173|ref|YP_322469.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC 29413] gi|75701898|gb|ABA21574.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC 29413] Length = 426 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 188/341 (55%), Gaps = 4/341 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E GY T +Q + L +D+L AQTG+GKT +F L L LL+++ S Sbjct: 12 IIRAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLH-LLSQDSLKS 70 Query: 71 PASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 +S P+ AL + PTRELA QV + + V GGVS++ +++ L+ I Sbjct: 71 ASSPSSPIRALILTPTRELAAQVESSVRDYGKYLNLNSMVMFGGVSINPQKQRLKGRVDI 130 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL DH++ +N+S ++ +VLDEAD MLD+GF DI IL PK+R+ L+F A Sbjct: 131 LVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLLFFA 190 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LA + +A N + + + + + + +++R Sbjct: 191 TFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAHLIRKDNWYQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ R K L Q +A+ G SQ R++AL ++G +V +ATD+AARG Sbjct: 251 LVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLVATDIAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+ +L V++ +L PE+ +HR GRTGRAG G +V ++ Sbjct: 311 LDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLV 351 >gi|50551977|ref|XP_503463.1| YALI0E02552p [Yarrowia lipolytica] gi|74659870|sp|Q6C799|DBP8_YARLI RecName: Full=ATP-dependent RNA helicase DBP8 gi|49649332|emb|CAG79042.1| YALI0E02552p [Yarrowia lipolytica] Length = 442 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 202/354 (57%), Gaps = 16/354 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + E+LS +++Q+A + ++ KD + A+TGSGKT+AF A+ +LAE Sbjct: 8 LPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAF----AAPMLAEW 63 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P L + PTRELA+Q+ + L A + VA+ GGV + ++ +LQ H Sbjct: 64 SK-DPCGI-FGLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQKMPH 121 Query: 127 IVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKR 180 V+ TPGRL DHIR G + ++ VV+DEAD +L GF D++ +D P KR Sbjct: 122 FVIATPGRLADHIRSSGEDTIRGFRRVRYVVMDEADRLLTPGFVPDLKTCMDLLPDPSKR 181 Query: 181 RMLMFSATISPAITTLA-KNYQKDAVRVN-IASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + L+F+AT++ A+ L + +K ++ IAS+ S + + + R+ + I Sbjct: 182 QTLLFTATVTDAVRALKDRTGEKGPPFIHEIASDIAVPSTLTQSYLFLPGYVREAYLWAI 241 Query: 239 LRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 L + + K+AI+F + + ++L + +L E+ QQER NAL R AR Sbjct: 242 LTHPDNEKKSAIIFVNRTQTAETLRRMLMALDVKTASLHSEMRQQERVNALGRFRAQAAR 301 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 V +ATDVA+RG+D+P +E+VI+ +L ++ ++ +HR GRT RAGRKG SV ++ + Sbjct: 302 VLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTE 355 >gi|315090516|gb|EFT62492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4] Length = 491 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 193/362 (53%), Gaps = 11/362 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 26 GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 86 PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L+FSAT+ A+ L + Y + V + + + + + A + ++ + I Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATD Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+ Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377 Query: 363 AN 364 A Sbjct: 378 AG 379 >gi|291004226|ref|ZP_06562199.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 491 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/360 (34%), Positives = 184/360 (51%), Gaps = 6/360 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + AL + G +Q A + L +DVL QTGSGKT+AFGL L LA Sbjct: 52 GLPERLVRALGDLGMTEAFPIQAATIPDALGGRDVLGRGQTGSGKTLAFGLPL----LAM 107 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P L + PTRELA QV L+ L G+ V +GG+S R+ L+ G Sbjct: 108 QGSSARPLHPRGLVLVPTRELATQVTDSLKPLAKALGLYVREVVGGMSFSRQADTLRRGV 167 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH+R +S ++ LDEAD+M D+GF + +LD P + L+F Sbjct: 168 DVLVATPGRLSDHVRQGTCVLSEVERTALDEADQMADMGFLPQVRELLDLVPADGQRLLF 227 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L Y D V ++A +D+ +LV + + + I G Sbjct: 228 SATLDGDVDKLVHEYMTDPVVHSLAPPAASVDSMDHHQLLVTAEQKQDVLARIGAREG-- 285 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ R T+ L + AL G +Q RS L+ R G +AT+VAA Sbjct: 286 RTIMFVRTKHHADRLTRKLRAAGVRAGALHGGKAQNARSRILEEFRQGGTTTLVATNVAA 345 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LV+H E ++P++ LHR+GRT RAG G V ++ + +R + +A V Sbjct: 346 RGIHVDDVSLVVHVEPPADPKDYLHRAGRTARAGATGTVVTLVTDDQKRAFRAMTAKAGV 405 >gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 442 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 179/336 (53%), Gaps = 4/336 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+SE GY + +Q + L+ D+L AQTG+GKT F L L L +++ + S Sbjct: 15 AVSESGYSQPSPIQSKAIPVVLQGGDLLAGAQTGTGKTAGFALPLLQRL---SEKPAQKS 71 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QV + V GGVS+ + L+ G I+V TP Sbjct: 72 RPIRALVLTPTRELAAQVEASFRLYGKHLPLRTTVVFGGVSIRPQITTLRQGVDILVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K +++S ++ +VLDEAD MLD+GF DI IL P +R+ L+FSAT S Sbjct: 132 GRLLDHVSQKTIDLSKVEMLVLDEADRMLDMGFLRDIRKILALLPIQRQNLLFSATFSDE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA K + +A N +D + + + +++ + +VF Sbjct: 192 IKRLADGLLKSPTLIEVARRNTAAEQVDQAIYRIDKGLKRALLSHLISGQNWQQVLVFTR 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R LA+ A+ G SQ R+ AL + G+ RV +ATD+AARG+D+ Sbjct: 252 TKHGANRLAGQLAKDGISSTAIHGNKSQGARTRALADFKQGKVRVLVATDIAARGLDIEQ 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL + PE+ +HR GRTGRAG G ++ + Sbjct: 312 LPHVVNYELPNVPEDYVHRIGRTGRAGCSGNAISFV 347 >gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC 35937] gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC 35937] Length = 461 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T++Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|302557418|ref|ZP_07309760.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000] gi|302475036|gb|EFL38129.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000] Length = 485 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 194/358 (54%), Gaps = 10/358 (2%) Query: 12 GEALSERGYVNLT---SVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 G+ L+E G +T +Q A L L +DVL +TGSGKT+AFGLAL + + R Sbjct: 66 GQLLAELGKQGVTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ--R 123 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P PL L + PTRELA QV L G+ +A +GGVS+ R+ L+ GA +V Sbjct: 124 AEPRR-PLGLVLVPTRELAQQVTDALTPYARSVGLRLATVVGGVSIGRQAGALRGGAEVV 182 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSA 187 V TPGRL D I ++H+ VLDEAD+M D+GF + +LD P+ +RML FSA Sbjct: 183 VATPGRLKDLIDRGDCGLNHVGVTVLDEADQMTDMGFMPQVTALLDQVRPEGQRML-FSA 241 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ + L + Y D V ++ + +++ + V +D+ A I G Sbjct: 242 TLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQEADKHAATTEIAARDG--RV 299 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ +V R T+ L + AL G SQ +R+ L + G V +AT+VAARG Sbjct: 300 IMFLDTKHAVDRLTRNLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVAARG 359 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 I + DL+LV++ + ++ ++ LHR+GRT RAG G V ++ N +R RL +A + Sbjct: 360 IHVDDLDLVVNVDPPTDHKDYLHRAGRTARAGESGSVVTLVTPNQRRGMIRLMSDAGI 417 >gi|307721464|ref|YP_003892604.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979557|gb|ADN09592.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica DSM 16294] Length = 423 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 112/336 (33%), Positives = 184/336 (54%), Gaps = 5/336 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+++ GY T VQ + L +KDV +AQTG+GKT AF L + L + + + Sbjct: 14 DAINDLGYKEPTLVQTRAIPLVLGKKDVFATAQTGTGKTAAFALPI----LQKMRKHVES 69 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A+ ++PTREL++Q+ ++ + + +GG + ++R L+ G IV+ TP Sbjct: 70 KGVRAIILSPTRELSIQIYEDITAYSKYMDIKTTILVGGKDLQKQREALKKGTEIVIATP 129 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL +HI GL++ ++ VLDEAD MLD+GF DI I PK+ + L+FSAT S Sbjct: 130 GRLLEHIEN-GLSLKDVEVFVLDEADRMLDMGFTKDIRKIHPLLPKRHQTLLFSATFSDK 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L+K + A +N I+ A LV + + ++ +VF Sbjct: 189 VRKLSKLILTKPAFIETAKKNTTVDTINQVAYLVDTVRKAELLAYLIGSRNFPQVLVFTR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ S ++ L + + + G+ ++ R L ++G+ RV +ATD+A+RG+D+ + Sbjct: 249 TKVSADALSEELKKDGLKCGVIHGDRTKANRLKTLNQFKEGKIRVLVATDIASRGLDIEE 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L VI+ EL S PE+ +HR GRTGRAGR+G ++ +I Sbjct: 309 LPYVINYELPSIPEDYVHRVGRTGRAGREGEAISLI 344 >gi|193669397|ref|XP_001951491.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Acyrthosiphon pisum] Length = 401 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/328 (33%), Positives = 183/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +A+ ++ S L Sbjct: 47 GFERPSAIQQRAIKPMIKGRDVIAQAQSGTGKTATFSIAMLQSI------DSQLRDTQVL 100 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ + + L V CIGG ++ + R L G HIV GTPGR+ D Sbjct: 101 CLSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNLGEDLRKLDFGQHIVSGTPGRVFDM 160 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR K L ++K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 161 IRRKALRTRNIKTLVLDEADEMLNKGFKEQIYDVYRFLPPATQVILISATLPHEILEMTN 220 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FCST+ V Sbjct: 221 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCSTKRKV 280 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER ++ R G+ RV I TD+ ARGID+ + LVI Sbjct: 281 DWLTEKMRESNFTVSSMHGDMPQKERDAIMKEFRAGQTRVLITTDIWARGIDVQQVSLVI 340 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 341 NYDLPNNRELYIHRIGRSGRFGRKGVAI 368 >gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814] gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814] Length = 769 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 184/342 (53%), Gaps = 1/342 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL + GY T +Q + + D+L AQTG+GKT AF L L L D P Sbjct: 15 KALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPLLHHLCKLPDMPGPG 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + L IAPTRELA Q+ + V GGV + ++ RDL GA ++V TP Sbjct: 75 AV-RCLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMRDLHRGADVLVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + +++S+++ +VLDEAD+MLDLGF + I + PK+R+ L FSAT+ Sbjct: 134 GRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKERQTLFFSATMPSN 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 ++ LA + + +V+IA E+ + V + + ++ L+ A+VF Sbjct: 194 VSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLVNLQDESIDRALVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + A+ G SQ +R AL R+G ++V +ATD+AARGID+P Sbjct: 254 TKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVLVATDIAARGIDVPG 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + V + E+ + PE +HR GRT RAGR+G ++ + ++ ++ Sbjct: 314 VSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKK 355 >gi|297625843|ref|YP_003687606.1| hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921608|emb|CBL56162.1| Hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1043 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 192/361 (53%), Gaps = 6/361 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ I E L +G + +Q+A + L +DVL QTGSGKT+AFG+ + + L A Sbjct: 621 VPQPIVEELDSQGILAPFPIQQAAIPDALSGRDVLGRGQTGSGKTLAFGIPVITRLAASG 680 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 P AL +APTRELA QV L L G+ + GG+S + R L+ G Sbjct: 681 --TGHGRQPRALLMAPTRELAQQVNDVLFPLAKAMGLSTILVAGGMSYTPQLRALERGVD 738 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL D I + ++ VVLDEADEM D+GF D+ ILD ++ + L+FS Sbjct: 739 IVVATPGRLIDLIERGSAKLGEVQEVVLDEADEMADMGFMPDVTRILDEISREAQHLLFS 798 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + T+ + Y D V + S + S R L ++ RD A + + Sbjct: 799 ATLDRQVDTIVRRYMHDPVEHGVDSA--KASVTTMRHELWTVNARDKAAIIAQAANRPGR 856 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ R + L + AL G L Q R+ L R GR V +ATDVAAR Sbjct: 857 TLVFVRTQRDADRTAEQLRDLGLMAGALHGGLPQGMRARVLYAFRQGRVPVLVATDVAAR 916 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAERLFREANV 365 GID+ D+ LV+ A+ + ++ LHR+GRT RAG G+ + V+P+ R A R+ R+A V Sbjct: 917 GIDVDDVSLVLQADPPHDSKDYLHRAGRTARAGEDGLVATLVLPRARGRMA-RIMRDAGV 975 Query: 366 S 366 + Sbjct: 976 N 976 >gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM 70294] gi|160358661|sp|A7TS37|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3 gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM 70294] Length = 506 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 112/346 (32%), Positives = 195/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I EA + T +Q + P L+ D++ AQTGSGKT AF + + + L + Sbjct: 94 VPELI-EACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 152 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + A +APTRELA Q+ + L + GV A +GG+++ + RDL H Sbjct: 153 QPY------YACILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMRKPH 206 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184 I++ TPGRL DH+ +G ++ LK +V+DEAD +LD+ F ++ IL P + R + Sbjct: 207 IIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTYL 266 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ ++ Sbjct: 267 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTYLIYLMNEFIG 326 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K IVF T+A+ R T + F AL G+L+Q +R+ +L + + GR + +ATDVA Sbjct: 327 KTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSILVATDVA 386 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++VI+ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 387 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 432 >gi|157963312|ref|YP_001503346.1| ATP-dependent RNA helicase DbpA [Shewanella pealeana ATCC 700345] gi|157848312|gb|ABV88811.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC 700345] Length = 469 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 183/329 (55%), Gaps = 7/329 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY ++T +Q L L +DV+ +TGSGKT AFGL L L + R Sbjct: 27 LKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLDVKRFRIQ---- 82 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L + V GGV + + L++GAHI+VGTPG Sbjct: 83 --CLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPG 140 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L++ ++ +VLDEAD ML++GF+ ++E I+D P +R+ L+FSAT I Sbjct: 141 RIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMDRMPIERQTLLFSATFPEQI 200 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++A V V +AS + + + + +DR A+ +L + ++A+VFC+T Sbjct: 201 QSIADKIMFKPVLVKVASTHATSTIEQHFYEVGNNNDRMRALKLLLLQYRPESAVVFCNT 260 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L F VVAL G+L Q++R L + + +ATDVAARG+D+ L Sbjct: 261 KRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDAL 320 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + VI+ ++ + E +HR GRTGRAG KG Sbjct: 321 DAVINYHVAYDTEVHIHRIGRTGRAGSKG 349 >gi|321249945|ref|XP_003191631.1| pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus gattii WM276] gi|317458098|gb|ADV19844.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus gattii WM276] Length = 737 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 189/367 (51%), Gaps = 31/367 (8%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62 IP I + + E GY + +Q + ++ +D++ A+TGSGKT AF + + + Sbjct: 322 IPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLP 381 Query: 63 -LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L +++R P AL +APTRELA Q+ E G +GG SV ++ L Sbjct: 382 PLNDDNRHL---GPYALILAPTRELAQQIEAETRKFAIPLGYKCVSIVGGRSVEEQQFAL 438 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 ++GA I++ TPGRL D + L +S + VV+DEAD M+DLGF D+ FILDS P Sbjct: 439 RDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFV 498 Query: 180 -------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 R +FSAT+ PA+ LA+ Y V I + ++ Sbjct: 499 KPDDAVALQPTTEGDWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVDTVE 558 Query: 221 YRAVLVALSDRDNA-IVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278 R V ++ A ++ ILR G IVF + + + K + + V L Sbjct: 559 QRVEFVHGDEKKKARLIEILRTIGLPPPMIVFVNQKKTADMVVKYVQQAGMSGVTLHSGK 618 Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338 SQ++R ALQ +RDG V +ATD+A RGID+PD+ LVI+ ++S E +HR GRTGRA Sbjct: 619 SQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRA 678 Query: 339 GRKGMSV 345 G+ G+++ Sbjct: 679 GKTGVAI 685 >gi|260168758|ref|ZP_05755569.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. F5/99] Length = 535 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 191/363 (52%), Gaps = 9/363 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G +Q + L +D+L AQTGSGKT AF L + ++ D+ P +A AL Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + + + + A+ +GGVS + + + G +++ TPGRL D Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R +++S + +VLDEAD MLD+GF +D++ I ++ +R+ +FSAT+ I +LA+ Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 +D VRV +A + S+I V ++ + +L ++ IVF T+ Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L + V A+ G SQ R AL RDG R+ +ATD+AARGID+P V++ Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 404 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370 + PE +HR GRTGR G G S+ + ++ R ER+ R + V Sbjct: 405 YDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464 Query: 371 PAP 373 PAP Sbjct: 465 PAP 467 >gi|258620667|ref|ZP_05715704.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] gi|258623759|ref|ZP_05718717.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] gi|262172593|ref|ZP_06040271.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451] gi|258583956|gb|EEW08747.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] gi|258587182|gb|EEW11894.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] gi|261893669|gb|EEY39655.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451] Length = 436 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 190/347 (54%), Gaps = 16/347 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQVI + L ++G++ T +Q L L +D+ AQTG+GKT+AF A + LL Sbjct: 18 PQVI-DGLEKKGFIYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73 Query: 68 RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +PA + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ L Sbjct: 74 --TPAAEGRAETQPRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLAKL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179 Q+G I++GT GR+ D + + N++H++AVVLDEAD M DLGF DI F+ PK Sbjct: 132 QSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT+S + LA + + V + E + I + +D A++ L Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQ-EELFYPSNDHKMALLQTL 250 Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 AI+F +T+ + LA +V L+G++ Q++R L+ G + Sbjct: 251 VEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|194442237|ref|YP_002040055.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194400900|gb|ACF61122.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 453 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 402 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/333 (36%), Positives = 180/333 (54%), Gaps = 1/333 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL GY T +QE + L+ DVL AQTG+GKT +F L L L R P Sbjct: 16 KALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQRLDQFKKRAMPK 75 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S + L + PTRELAVQVG+ + + A+ GGV + + + + G ++V TP Sbjct: 76 SCRI-LVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMAGGVDVLVATP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I + + ++A+VLDEAD MLD+GF I I+ PK+R+ ++FSAT+ + Sbjct: 135 GRLLDLIDQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVAMVPKQRQTVLFSATMPDS 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + VRV + + ID + + V + + +IL A+VF Sbjct: 195 IVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTLLTDILGGADVVRALVFTR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R ++L + A+ G SQ R AL RDG+ + +ATD+AARGID+ Sbjct: 255 TKHGANRVVELLEKAGIDADAIHGNKSQGARQKALSDFRDGKIKALVATDIAARGIDVDG 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ EL + PE+ +HR GRT RAG G+++ Sbjct: 315 ITHVINFELPNEPESYVHRIGRTARAGASGIAL 347 >gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium dendrobatidis JAM81] Length = 483 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 193/365 (52%), Gaps = 8/365 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 + P + + + G+ TS+Q L +DV+ A+TGSGKT+A+ L + A+ Sbjct: 61 SFPSYVLKEVESLGFSAPTSIQSQGWPMALSGRDVVGVAETGSGKTLAYTLPSIVHINAQ 120 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P P+ L +APTRELA+Q+ E + + + GGV + RDL+ G Sbjct: 121 -PLLKPGDGPIVLILAPTRELAIQIQVECNKFGSSSRIKNTCLYGGVPKGPQMRDLERGI 179 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I + TPGRL D + N+ + +VLDEAD MLD+GF I I+D R+ LM+ Sbjct: 180 EICIATPGRLIDMLESGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 239 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR---Y 241 SAT + LA++YQK+ ++VN+ S S + V + S D+ + + +L Sbjct: 240 SATWPKEVQALARDYQKEFIQVNVGSMELSASHNITQIVEICPSHDKRHRLYKLLEDIMS 299 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + + I+F T+ + T+ L F +A+ G+ QQER +Q + G+ + IAT Sbjct: 300 NADQKTIIFTGTKRTADDITRDLRHDGFPALAIHGDKKQQERDWVMQEFKSGKTPILIAT 359 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ--RRAER 358 DVAARG+D+ D++ VI+ + +N E+ +HR GRTGRA KG + + P N + R + Sbjct: 360 DVAARGLDVKDVKFVINFDFPNNIEDYVHRIGRTGRANNKGTAYTLFSPDNFKSARDLVK 419 Query: 359 LFREA 363 + EA Sbjct: 420 ILEEA 424 >gi|325964952|ref|YP_004242858.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans Sphe3] gi|323471039|gb|ADX74724.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans Sphe3] Length = 633 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 190/365 (52%), Gaps = 4/365 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66 P+ + + L+ +G +Q L L +DVL +TGSGKT+AF + L + L E Sbjct: 10 PKALADTLTAQGIETPFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPLVARLAEREA 69 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F P+ L +APTRELA Q+ +E L G+ V GG+S R+ + L+ G Sbjct: 70 PYFRKPGRPMGLVLAPTRELATQINATIEPLAKAAGLNTTVIYGGISQARQEKALRAGVD 129 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ PGRL D IR + L + ++ VLDEAD M DLGF ++ ++D +P + + L+FS Sbjct: 130 IVIACPGRLEDLIRQRILTLEAVEITVLDEADHMADLGFLPVVKKLMDMTPSQGQRLLFS 189 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245 AT+ + + + Y + + ++ + +++ ++V + + IV + GA Sbjct: 190 ATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIVEL--ASGAG 247 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ + K L + V L G LSQ R L +G RV +ATDVAA Sbjct: 248 RRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVRVLVATDVAA 307 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + D+ELVIH + + + LHRSGRT RAG G V + Q ++L + A V Sbjct: 308 RGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTITLPEQQTDVKKLMKAAGV 367 Query: 366 SVVWE 370 V +E Sbjct: 368 DVSFE 372 >gi|237786051|ref|YP_002906756.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM 44385] gi|237758963|gb|ACR18213.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length = 558 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 187/351 (53%), Gaps = 16/351 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+E G + ++QE L L KD++ A+TG GKT+A+G+ L + + Sbjct: 103 IVDALAEHGITHTFAIQELTLPLALDGKDLIGQARTGMGKTLAYGVPLLDRIFDDAAIPE 162 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLY---------AKTGVVVAVCIGGVSVHRERRDL 121 P AL +APTRELA QV +L ++ V +C GG ++ L Sbjct: 163 LDGTPRALVVAPTRELAYQVADDLTLAARHLANFNEEHRSLRVTTIC-GGHPFEKQIAQL 221 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G +VGTPGRL D + + LN+SH+ +VLDEADEMLDLGF DIE IL P+KR+ Sbjct: 222 REGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKILQQVPEKRQ 281 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVN 237 ++FSAT+ I LA+ + V+I +E S VA + + Sbjct: 282 TILFSATMPAPIMALARTFMNKP--VHIRAEGTDDSTTHTTTKQVAFKNHKLNKLATLSA 339 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL+ H I+F T+ S + LA+ F V A+ G+++Q R +L R + + Sbjct: 340 ILQAHNRGRTIIFTRTKRSAADVADDLAQRGFLVGAVHGDMAQPAREKSLNAFRSKKIEI 399 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARGID+ D+ VI+ ++ + +HR GRTGRAG G +V ++ Sbjct: 400 LVATDVAARGIDVDDVTHVINYQVPDDAMTYVHRIGRTGRAGHTGTAVTLV 450 >gi|188574399|ref|YP_001911328.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518851|gb|ACD56796.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 405 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 201/370 (54%), Gaps = 16/370 (4%) Query: 22 NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA-- 79 LT +Q A++ P L +D++V+AQTGSGKT+A+ L L L +P P L Sbjct: 3 TLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQQRLQ-----APEQVPRVLGGL 57 Query: 80 -IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 + PTREL QV + L L A + + GG +++ + L+ GA IV+ TPGRL Sbjct: 58 ILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGGADIVIATPGRLL 117 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 D + L +S ++ +VLDEAD +LDLGF +I+ IL P +R+ ++ SAT PAI +L Sbjct: 118 DLVTHNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPAQRQSVLVSATFPPAIASL 177 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 AK +D +R+ I + I RA+ V R + ++L+ H +VF ++R + Sbjct: 178 AKRRLRDPLRITIDATPEHAPAIAQRAIAVDAGQRTQLLRHLLQEHAWPQLLVFVASRHT 237 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 + + L++ + + L GELSQ R L+ + +V +ATD+AARGID+ L V Sbjct: 238 ADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVATDLAARGIDIDALPAV 297 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR-----RAERLFREANVSVVWE 370 ++ +L + + HR GRT RAG G ++ FV + Q+ + + L +V +E Sbjct: 298 LNYDLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQQWRLIEKRQGLRVPTSVIEGFE 357 Query: 371 PAPSVEAIRE 380 P+P+ + R+ Sbjct: 358 PSPAEASARD 367 >gi|161614932|ref|YP_001588897.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168230715|ref|ZP_02655773.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168820033|ref|ZP_02832033.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194471685|ref|ZP_03077669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|200390413|ref|ZP_03217024.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|161364296|gb|ABX68064.1| hypothetical protein SPAB_02686 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194458049|gb|EDX46888.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|199602858|gb|EDZ01404.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205334823|gb|EDZ21587.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343118|gb|EDZ29882.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085093|emb|CBY94880.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17; RNA-dependent helicase p72; DEAD box protein p72 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 454 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|56414080|ref|YP_151155.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167550495|ref|ZP_02344252.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168240684|ref|ZP_02665616.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263681|ref|ZP_02685654.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466416|ref|ZP_02700278.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194451116|ref|YP_002044848.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197363003|ref|YP_002142640.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243732|ref|YP_002214783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207856257|ref|YP_002242908.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|56128337|gb|AAV77843.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409420|gb|ACF69639.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631083|gb|EDX49669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094480|emb|CAR59997.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197938248|gb|ACH75581.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205324518|gb|EDZ12357.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205339744|gb|EDZ26508.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347690|gb|EDZ34321.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708060|emb|CAR32351.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|322616296|gb|EFY13205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619546|gb|EFY16421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622758|gb|EFY19603.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628670|gb|EFY25457.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631607|gb|EFY28363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637134|gb|EFY33837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641666|gb|EFY38302.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644539|gb|EFY41079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322654208|gb|EFY50531.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658123|gb|EFY54390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663597|gb|EFY59799.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670333|gb|EFY66473.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671569|gb|EFY67691.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676925|gb|EFY72992.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682850|gb|EFY78869.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686529|gb|EFY82511.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194574|gb|EFZ79767.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199095|gb|EFZ84191.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202050|gb|EFZ87109.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208924|gb|EFZ93861.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213909|gb|EFZ98679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215239|gb|EFZ99984.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220842|gb|EGA05280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227299|gb|EGA11467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229917|gb|EGA14040.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233142|gb|EGA17238.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240877|gb|EGA24919.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243194|gb|EGA27214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248733|gb|EGA32661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251737|gb|EGA35604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323261448|gb|EGA45029.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267879|gb|EGA51358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|326622538|gb|EGE28883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 453 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|16759741|ref|NP_455358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142486|ref|NP_805828.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163843|ref|ZP_03349553.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424785|ref|ZP_03357535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213854569|ref|ZP_03382809.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25385229|pir||AI0599 probable ATP-dependent RNA helicase rhlE STY0855 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502034|emb|CAD05267.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Typhi] gi|29138117|gb|AAO69688.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 455 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|325115741|emb|CBZ51296.1| hypothetical protein NCLIV_043620 [Neospora caninum Liverpool] Length = 673 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/355 (32%), Positives = 186/355 (52%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 PQ I + L ERG T +Q + L+ +D++ A TGSGKT+ F L + L Sbjct: 231 FPQPILKGLQERGISFPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIMGALESE 290 Query: 67 DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKT---GVVVAVC---IGGVSVHRER 118 R + P P L + P+RELA Q + K G C IGG SV + Sbjct: 291 TRAAYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEEGGYPALRCLCVIGGCSVVEQA 350 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R+++ G H +V TPGRL D + + L++ + + DEAD M+D+GF +++ +LDS Sbjct: 351 REVRQGVHCIVATPGRLTDMLNKRRLSLQQCEYLCFDEADRMVDMGFEEEVRNVLDSFGH 410 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AK+ D + VN+ + D+ V ++ +++ Sbjct: 411 QRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQENKLPYLLHC 470 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ A ++FC + V + L A+ G L+Q+ERS+A++ R+GR V Sbjct: 471 LQ-KTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSDAVRAFREGRKDVL 529 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + TDVA++G+D P ++ VI+ ++ EN +HR GRTGR GR G++ + +N + Sbjct: 530 VGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVNKNQE 584 >gi|260774211|ref|ZP_05883126.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] gi|260611172|gb|EEX36376.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] Length = 442 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 125/376 (33%), Positives = 195/376 (51%), Gaps = 23/376 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+ + T +Q + + KD+L S++TGSGKT+AF L + L + A Sbjct: 14 KTLAHYDFKQATDIQRQAIPVAMAGKDLLASSKTGSGKTLAFLLPMLHKAL--KTKALSA 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P + + PTRELA QV EL A + GG + + + L+ G +V TP Sbjct: 72 RDPRGVILVPTRELAKQVYSELRSALAGLSYTATLITGGENFNDQVNALRRGPKFIVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISP 191 GRL DH+ + L + L ++LDEAD MLDLGF + I +++ +RR LMFSAT+ Sbjct: 132 GRLADHLEHRSLFLQGLDTLILDEADRMLDLGFAPQLRHIHNAAKHRRRQTLMFSATLDH 191 Query: 192 A-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIV 249 A + T+A K+ R+ I N QH DI R L D A+++ IL + I+ Sbjct: 192 AEMNTIAHEMLKEPKRIAIGLGNEQHKDIRQRFYLCDHLDHKEALLDRILNDAEYRQVII 251 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +TRA R T L E +VVALSG L+Q +R+ + ++ + TD+A+RG+D Sbjct: 252 FTATRADTERLTNKLNEQNLKVVALSGSLTQTQRNTIMSQFERAVFKILVTTDIASRGLD 311 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368 + ++ VI+ ++ + E +HR GRTGRAG +G ++ ++ P++ Sbjct: 312 IANVTHVINFDMPKHTEEYVHRVGRTGRAGNQGDAISLVGPKD----------------- 354 Query: 369 WEPAPSVEAIRERDAQ 384 W+ VEA ++D Q Sbjct: 355 WDSFKRVEAFLQQDIQ 370 >gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM 17241] gi|167668347|gb|EDS12477.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM 17241] Length = 439 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 179/337 (53%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q I A+ + GYV +++Q+ + P L DVL AQTG+GKT AF + + L + Sbjct: 28 QPILRAVRDEGYVEPSAIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPILQRLDTQCAS 87 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL + PTRELA+Q+ + + V GGV + +L+ G I+ Sbjct: 88 IKTPCVIRALVLTPTRELAIQIKDSFQSYGRYMRLRSTVVFGGVPQTPQVDELRRGVDIL 147 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D I +++S + VLDEAD MLD+GF D+E +++ P KR+ L FSAT Sbjct: 148 VATPGRLNDLIGQGIIDLSSVSVFVLDEADRMLDMGFIHDVERVINHLPNKRQTLFFSAT 207 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + AI L D V+V + + I+ R V ++ ++ +L +A+ Sbjct: 208 MPKAIMHLCDRILTDPVKVAVTPVSSPVEAIEQRLYFVDKPNKRRLLIYLLEDVSIVSAL 267 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R + L + + A+ G+ SQ R AL ++G RV +ATD+AARGI Sbjct: 268 VFTFTKHGADRVARELVKAGIKAQAIHGDKSQGARQRALSAFKNGDIRVLVATDIAARGI 327 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ +L V + +L + PE +HR GRTGRAG G+++ Sbjct: 328 DIDELSHVFNYDLPNIPETYVHRIGRTGRAGLGGIAI 364 >gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895] gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895] Length = 454 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ + Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITQQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|143462274|sp|Q0CIQ3|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3 Length = 445 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 188/341 (55%), Gaps = 8/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + EA E GY T +QE + L +D++ A+TGSGKT AF L + L+ + +F Sbjct: 39 LCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFH 98 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +L +APTRELA Q+ +E L A+ V + IGG+ + + L H++V Sbjct: 99 ------SLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPHVIVA 152 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ KG ++ LK +VLDEAD +LDL F ++ +L PK R+ +FSAT+ Sbjct: 153 TPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLPK-RKTYLFSATM 211 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S + +L + D VRV+++++N+ S + + + +D +V +L + I+ Sbjct: 212 SSKVESLQRASLSDPVRVSVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLNERAGQMGII 271 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T R + +L F + + G+LSQ R +L R + IATDVAARG+D Sbjct: 272 FTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARGLD 331 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +P ++ V++ +L + + +HR GRT RAG+ G++ + Q Sbjct: 332 IPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQ 372 >gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus] Length = 645 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 187/340 (55%), Gaps = 10/340 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ FS Sbjct: 222 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGAAASCFSE 281 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GGVS + RDL G +++ GT Sbjct: 282 MQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGHQIRDLLRGCNVLCGT 341 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + ++ ++ +VLDEAD MLD+GF D+ ++ S S + R+ LMFS Sbjct: 342 PGRLLDMIGRGK-VGLTKVRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 400 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I LA ++ K D + + + SD++ V V + ++++L+ G++ Sbjct: 401 ATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKREQLIDLLKSTGSE 460 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ +L + F ++ G+ Q +R AL R G+ V +AT V A Sbjct: 461 RTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDFRSGKCSVLVATSVGA 520 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+PD++ V++ +L +N + +HR GRTGR G G +V Sbjct: 521 RGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 560 >gi|269139672|ref|YP_003296373.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|267985333|gb|ACY85162.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|304559541|gb|ADM42205.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda FL6-60] Length = 440 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 194/371 (52%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY + T +Q+ + L+ +D++ SAQTG+GKT F L L LL +N + Sbjct: 15 AVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLLQ-LLHQNPKNGKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TP Sbjct: 74 RPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMMKLRGGVDVLVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + V +A N + LV + + ++ + +VF Sbjct: 194 IKALAASLLHNPAEVEVARRNTASELVTQHVHLVDKKRKRELLSFLIGTRDWRQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 254 TKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + + Sbjct: 314 LPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDIERLLKRPIPRMAI 373 Query: 369 --WEPAPSVEA 377 +EP P+++A Sbjct: 374 EGYEPDPTIKA 384 >gi|262164808|ref|ZP_06032546.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223] gi|262027188|gb|EEY45855.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223] Length = 464 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ R Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPRVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA ++V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGADVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|238878470|gb|EEQ42108.1| conserved hypothetical protein [Candida albicans WO-1] Length = 581 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 197/369 (53%), Gaps = 30/369 (8%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF----S 70 +S+ GY TSVQ A + L+++DV+ A+TGSGKT+AF + + + +L+ ++ + Sbjct: 183 ISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEK 242 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129 ++ P+ L +APTRELA+Q+ +E E K G V IGG + Q G H++V Sbjct: 243 ISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIV 302 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------ 177 TPGRL D I K +++S +V+DEAD M+D+GF D+ +LD P Sbjct: 303 ATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDGR 362 Query: 178 ----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI----DYRAVLVALS 229 +KR +MF+ATISP + L K Y D + I +I ++ + + Sbjct: 363 IFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEA 422 Query: 230 DRDNAIVNILRYHG--AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285 + N ++ I+R H +N I+F + + ++ L+ + V + G SQ R Sbjct: 423 TKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQ 482 Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS- 344 A+ R+ + V IATDVAARGID+P++ LVI+ ++ + +HR GRTGRAG G S Sbjct: 483 AITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESF 542 Query: 345 VFVIPQNMQ 353 F+ Q+ + Sbjct: 543 TFISDQDTE 551 >gi|25809054|gb|AAN74635.1| DEAD box RNA helicase [Pisum sativum] gi|40950574|gb|AAR97917.1| DEAD box RNA helicase [Pisum sativum] Length = 413 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/361 (33%), Positives = 193/361 (53%), Gaps = 7/361 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YSVTECQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV + P+ E Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLGDIQKFYNVLIEELPSNVAEL 412 Query: 378 I 378 + Sbjct: 413 L 413 >gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506] gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506] Length = 557 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 179/337 (53%), Gaps = 1/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I +AL+E + T +Q + L +D++ AQTG+GKT AF L + L+ + R Sbjct: 16 EPILKALAEANHSTPTPIQAQAVPQVLAGRDLVGIAQTGTGKTAAFALPILHHLVTKRLR 75 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 SA AL ++PTREL+ Q+ A+ IGGV + R+ R L G ++ Sbjct: 76 PERRSA-RALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPIGRQARSLAGGVDVL 134 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + + + ++ VLDEAD+MLD+GF I I+ P KRR L FSAT Sbjct: 135 VATPGRLVDLLENNAVRLDMVEVFVLDEADQMLDMGFIHAIRSIVARLPHKRRNLFFSAT 194 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA D VRV + + I+ + + + N +V +L A+ Sbjct: 195 MPREIEKLADTLLSDPVRVAVTPVAKTADKIEQKVFFTDRAGKPNLLVEVLGEPTLDRAL 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R K LA A+ G SQ +R AL R G +V +ATD+AARGI Sbjct: 255 VFSRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALAAFRQGVVKVLVATDIAARGI 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+P + VI+ +L + PE+ +HR GRT RAGR+G+++ Sbjct: 315 DVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAI 351 >gi|294637108|ref|ZP_06715421.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685] gi|291089702|gb|EFE22263.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685] Length = 452 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY + T +Q+ + L+ +D++ SAQTG+GKT F L L LL +N + Sbjct: 15 AVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLLQ-LLHQNPKNGKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TP Sbjct: 74 RPVRALILTPTRELAAQIGDNVREYSRHLPLRSLVVFGGVSINPQMMKLRGGVDVLVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + V +A N + LV + + ++ + +VF Sbjct: 194 IKALAASLLHNPAEVEVARRNTASELVSQHVHLVDKKRKRELLSFLIGSQDWRQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 254 TKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + + Sbjct: 314 LPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDIERLLKRPIPRMAI 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 AGYEPDPSIKA 384 >gi|300932825|ref|ZP_07148081.1| putative ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100] Length = 420 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 197/367 (53%), Gaps = 8/367 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + L+ R + ++QE L L KD++ A+TG GKT FG+ L + + Sbjct: 18 ICDGLATRDITHAFAIQELCLPLALAGKDLIGQARTGMGKTYGFGIPLLDRVFDDAHVTP 77 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG-AHI 127 P +P AL I PTREL +QV +L + A+ + V GGV + + LQ G + + Sbjct: 78 PDGSPRALVIVPTRELCIQVADDLT-IAAQFLPEINVLALYGGVKFETQIQQLQQGHSDV 136 Query: 128 VVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +VGTPGRL D H RG+ L + +++ VVLDEADEMLD GF DD++ ++ + + R+M++FS Sbjct: 137 LVGTPGRLLDLHRRGE-LVLENVEIVVLDEADEMLDQGFLDDVQALIAETSENRQMMLFS 195 Query: 187 ATISPAITTLAKNYQKDAV--RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 AT+ I L++ + + V R + A + H+ A DR +A+ IL+ G Sbjct: 196 ATMPGPIMALSRTFMRHPVQIRADQAQSQQTHATTTQLAFQSHKLDRMSALARILQTPGR 255 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ + L E F A+ G++ Q ER L+ R+G V +ATDVA Sbjct: 256 GRTMVFTRTKKQAAFVASDLGELGFAAGAVHGDMRQHERQQCLEAFREGTVDVLVATDVA 315 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ D+ VI+ + + +HR GRTGRAG GM+V ++ + R L N Sbjct: 316 ARGIDVEDVTHVINYQCPDDDRAYVHRIGRTGRAGHTGMAVTLVGWDEVDRFNALCETLN 375 Query: 365 VSVVWEP 371 + + P Sbjct: 376 LDLSNPP 382 >gi|153953072|ref|YP_001393837.1| ATP-dependent RNA helicase [Clostridium kluyveri DSM 555] gi|219853723|ref|YP_002470845.1| hypothetical protein CKR_0380 [Clostridium kluyveri NBRC 12016] gi|146345953|gb|EDK32489.1| Predicted ATP-dependent RNA helicase [Clostridium kluyveri DSM 555] gi|219567447|dbj|BAH05431.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 481 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 112/371 (30%), Positives = 191/371 (51%), Gaps = 12/371 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I E+L + GY + + VQE ++ L+ KD++V +QTGSGKT AF + + + E Sbjct: 15 ILESLQKLGYNSPSEVQEKVIPLILKNKDIIVKSQTGSGKTAAFAIPICEKIEIEEKN-- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL + PTRELA+Q+ + ++ + G + + + L+ H+V G Sbjct: 73 ----PQALVLTPTRELALQIKEDFSYIGRLKKINCTAVFGKEPISLQIKKLKQRVHVVTG 128 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DHI L + +K +V+DEADEML GF + +E ++ S PK R L+FSATI Sbjct: 129 TPGRILDHIERNTLVLEKIKYLVIDEADEMLSRGFMEQVESVIGSLPKNRTTLLFSATIP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L Y ++ + + + E+ I + + + + I+ ++++F Sbjct: 189 DEILKLCNVYMENPLNIEVQCESSVKDRITQMYYKIEAPYKFSLLNKIIYTERPDSSMIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ +V + + AL G + Q ER + ++ + G I TD+AARGID+ Sbjct: 249 CRTKKNVDDLVLQMKARKYSCEALHGGMLQNERIDKIESFKRGEFTFLICTDIAARGIDV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSV 367 ++ +I+ ++ EN +HR GRTGR G ++ FV P+ ++ E F ++++ Sbjct: 309 ENITHIINYDIPMERENYIHRIGRTGRFTSNGTAITFVTPKEYLYLKKIEEYF---HITI 365 Query: 368 VWEPAPSVEAI 378 PS+E + Sbjct: 366 KEGSIPSLEEV 376 >gi|327404500|ref|YP_004345338.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320008|gb|AEA44500.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM 16823] Length = 407 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/341 (33%), Positives = 189/341 (55%), Gaps = 6/341 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I I + L G+ T +Q ++P L +DV AQTG+GKT AF + + L Sbjct: 8 ISDEIKKQLEVLGFKRPTDIQFKAISPILNGEDVFGIAQTGTGKTAAFAIPIIHKLSTSR 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + +P + +APTRELA Q+ E + + + + +GG+ ++ ++L+ G Sbjct: 68 PK---SKSPRCIVLAPTRELAEQIKDAFESIGVGSNIRITAILGGLEQDKQIQELKRGTD 124 Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGR+ D +R +G L++ ++ +VLDEAD MLDLGF D++ I SP++ R MF Sbjct: 125 VIVATPGRVFD-LRSQGHLSLDSIQFLVLDEADRMLDLGFAHDMKAIHKLSPQRNRQTMF 183 Query: 186 -SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SATI I LA + +DA+R+ I+ ++ ++++ A+ V + D+ + NI++ + Sbjct: 184 FSATIDKKIKALAYDLVRDAIRIQISPDDPVSKNVEHGAITVEMDDKRFFLENIIKEYEE 243 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ R + AL G + Q++R L+ + G ++ I TDVA Sbjct: 244 FKYVVFVRTKVRCERVVAAMERVGIHSEALHGGIEQKDRFAVLERFKSGENKILITTDVA 303 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ ++ VI+ +L PE +HR GRTGR KG ++ Sbjct: 304 ARGIDIQGVDYVINYDLPDQPEQYVHRIGRTGRGENKGQAL 344 >gi|172040746|ref|YP_001800460.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109] gi|171852050|emb|CAQ05026.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109] Length = 430 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/397 (32%), Positives = 197/397 (49%), Gaps = 39/397 (9%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + ++L G +Q +++ + KDVL SA TGSGKT+AFGL + + L + Sbjct: 19 GLPLALAQSLQRAGLREAFPIQASVIPSAVEGKDVLASAPTGSGKTLAFGLPMLARLSSG 78 Query: 66 N-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + R + P + + PTRELA QV L+ A G+ V +GGV V L Sbjct: 79 DLPRATRPGNPRGVVLCPTRELAEQVFENLDPHAAALGLRALVLVGGVKVRANLTSLART 138 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IVV TPGRL D I + +++ H V+DEAD M DLGF ++ IL+ +P+ + L+ Sbjct: 139 VDIVVATPGRLNDLIERRAISLEHCAVTVVDEADHMADLGFLPQVQAILERTPRGSQRLL 198 Query: 185 FSATISPAITTLAKNYQKDAVRVN--------------IASENRQHSDIDYRA------- 223 FSAT+ + LA+ + + VR+ + R ++++ R Sbjct: 199 FSATLDGEVAALAEGWTHNPVRIEAEGTHSGATSAPGPTTASVRHQAEVNARPTGPRPTP 258 Query: 224 ------------VLVALSD---RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268 +L ++D R A+ I R I F T +V+R+ K L+ Sbjct: 259 RATEDLASPVEFLLSEVADNGQRQAAVRAIARK--VPRVIFFVRTTHAVTRWAKYLSAGG 316 Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328 +V AL G Q R AL R+G+ RV +ATD+AARGID+P ++ V+H + +P+ L Sbjct: 317 IKVSALHGNRGHQSRQRALADFREGKVRVLVATDIAARGIDVPGVQAVVHIDPPRDPKAL 376 Query: 329 LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 +HRSGRTGRAG G + + R + R AN+ Sbjct: 377 VHRSGRTGRAGASGTVALLAFPDQVREVSTMMRAANL 413 >gi|197247942|ref|YP_002145775.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211645|gb|ACH49042.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 453 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|319407442|emb|CBI81093.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C] Length = 415 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/356 (33%), Positives = 192/356 (53%), Gaps = 9/356 (2%) Query: 26 VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 +QE + L+ D+L AQTGSGKT+AF L + + +L D+ P +A AL + PTRE Sbjct: 33 IQEKAIPVMLKGHDILGIAQTGSGKTLAFSLPILNRILTLGDKRYPKTAR-ALILVPTRE 91 Query: 86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145 LA+Q+ + + T + + +GG+S + R + G I++ T GRL D IR K ++ Sbjct: 92 LAIQIEEAISAIAKGTHLSTCLIVGGMSRLTQIRRMAKGVDILIATTGRLMDLIRSKYVD 151 Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205 +S + +LDEAD MLD+GF +D+ I +K + +FSAT+S + LA N + V Sbjct: 152 LSQSRFFILDEADRMLDMGFINDVRQIARFLNEKCQTALFSATMSKEVNVLADNLLRKPV 211 Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265 ++ + S+ ++I V+ S++ + + +L + IVF T+ + L Sbjct: 212 KIEVVSQGTTAAEITQVLYCVSTSEKKSILSKLLTNPALTSVIVFIRTKHGADSVARSLT 271 Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325 + + V + G SQ R AL+ R+G RV +ATD+AARGID+P + VI+ +L N Sbjct: 272 KAGYSVATIHGNKSQNARQCALKNFREGLVRVLVATDIAARGIDIPGISHVINYDLPDNA 331 Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERLFR----EANVSVVWEPAP 373 E+ +HR GRTGR G G ++ + +++ ERL R + + + P P Sbjct: 332 ESYVHRIGRTGRNGASGDAITFFDEKIEQVRLCAIERLIRMKLKRKEIPLQFAPLP 387 >gi|226940616|ref|YP_002795690.1| ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9] gi|226715543|gb|ACO74681.1| Putative ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9] Length = 520 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 182/338 (53%), Gaps = 4/338 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 AL + T VQ L L +D++ SAQTG+GKT AF L S LL E + + Sbjct: 17 HALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLLPALSRLLVEP--VARS 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L +APTREL QV + + K V VA IGG S + + L ++V T Sbjct: 75 RGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQNQMLTRPIEVMVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D +R ++ S L+ +VLDEAD MLD+GF +D+ I PK R+ F+AT++ Sbjct: 135 PGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLPKARQTAFFTATMTR 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250 + A + ++ IA++ +H +I+ +A+ V D +V +IL K AIVF Sbjct: 195 RVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDIDHKRRLVRHILSQPDVKQAIVF 254 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 +T+ L + AL G++ Q++R+ L +R G+ V +ATDVAARGID+ Sbjct: 255 VATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEVLVATDVAARGIDV 314 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + VI+ +L E+ +HR GRTGRAG G +V ++ Sbjct: 315 AGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSLV 352 >gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis] Length = 516 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 191/354 (53%), Gaps = 10/354 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 ++ E + + Y T +Q+ + L ++D++ AQTGSGKT AF L + ST+L Sbjct: 83 DVEDCFKENVRKANYDKPTPIQKWAIPIILAKRDLMACAQTGSGKTAAFLLPVLSTMLRN 142 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E +S P A+ + PTREL Q+ E T V V GGV + R+++ Sbjct: 143 GIEGSSYSEVQEPQAIIVGPTRELVSQIFNEARKFSYNTIVRPVVVYGGVQTSYQLREIE 202 Query: 123 NGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPK 178 GAH++VGTPGRL D I RGK +++ +K ++LDEAD MLDLGF+DDI+ +++ PK Sbjct: 203 KGAHMIVGTPGRLLDFIGRGK-ISLKKVKFLILDEADRMLDLGFKDDIKKLMNELGMPPK 261 Query: 179 K-RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 + R+ LMFSAT + +LA+ D + V + ++DI+ V D+ +++ Sbjct: 262 QERQTLMFSATFPEEVQSLARELLNDYLFVTVGRVGGANTDIEQMVYNVGQFDKRQKLID 321 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L + +VF + + L++ ++ G+ Q+ER AL + GR + Sbjct: 322 LLNACPNERVLVFVEQKRNADFLASFLSQSELPTTSIHGDREQREREIALNDFKSGRKPI 381 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQ 350 +AT VAARG+D+P + V++ ++ + +HR GRTGR G G + F P+ Sbjct: 382 LVATSVAARGLDIPGVMHVVNYDMPKEIDEYVHRIGRTGRCGNMGKATTFFNPE 435 >gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226] gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226] Length = 464 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPAKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|291165179|gb|ADD81194.1| vasa [Auxis thazard] Length = 627 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 188/340 (55%), Gaps = 10/340 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ RFS Sbjct: 209 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 268 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GGVS + R++ G ++V GT Sbjct: 269 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCNVVCGT 328 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + ++ L+ +VLDEAD MLD+GF D+ ++ S S + R+ LMFS Sbjct: 329 PGRLLDMIGRGK-VGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 387 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I +A ++ K D + + + SD++ + V + ++++L+ G++ Sbjct: 388 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGSE 447 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ G+ Q+ER AL R G+ V +AT VAA Sbjct: 448 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 507 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+PD++ V++ +L +N + +HR GRTGR G G +V Sbjct: 508 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 547 >gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei TREU927] gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei] gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei] gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense DAL972] Length = 632 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 232/460 (50%), Gaps = 40/460 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +AL +G V+L VQ +R +DVLV A+TGSGKT+AFG+ + L + Sbjct: 51 NLSSGMVKALEAQGIVSLFPVQALTFEAIMRGEDVLVQARTGSGKTLAFGIPIVEKLNKK 110 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P A+ PTRELA+QV L + +VVA GGV+ + R L +G Sbjct: 111 EGPLARGRGPAAVIFCPTRELAIQVRDVLAGVSGD--LVVAALYGGVAYSTQERVLFSGV 168 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-------SSPK 178 IVV TPGR D + L+ +K V LDEAD MLD+GF++DIE +L S+P Sbjct: 169 DIVVATPGRAKDFLEKGTLHFERVKMVCLDEADHMLDIGFKEDIELLLQRVAEQNGSTPD 228 Query: 179 --KRRMLMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 K + L+FSAT+ + T ++KN K + + R + I + ++ + Sbjct: 229 EPKHQTLLFSATVPDWVHTCSFISKN--KKFIDMVGQGAMRAANTIRFYRRKCGFAEVSS 286 Query: 234 AIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 + ++++ + ++ ++F +T+ + + L G++ Q++R + ++ R Sbjct: 287 MLADLVKVYSGRHGRTLIFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFR 344 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 D + V IATDVAARG+DLP ++LVI ++ + +HR+GRTGRAGRKG+ V + Sbjct: 345 DNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPK 404 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD---------PLFLDSIQGDEKK 402 + ER+ R A + PAP+ E I + A+ +D LF+D Q E Sbjct: 405 DEYVVERIERHAKIKFEVLPAPTREEILKAVARDAAEDMARVERSATNLFMD--QAAE-- 460 Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSG 442 LL DP +I A + + IT L+SG Sbjct: 461 ----LLKDADPTEILASAIAVMSG---YTSSITKRGLISG 493 >gi|333007150|gb|EGK26642.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218] Length = 406 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/373 (32%), Positives = 192/373 (51%), Gaps = 6/373 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 12 ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V Sbjct: 72 GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 132 TPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFS 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ + + + +A N + V + + +++ + +VF Sbjct: 192 DDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + + VA+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 252 TRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367 +L V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 312 EELPHVVNHELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 Query: 368 V---WEPAPSVEA 377 +EP PS++A Sbjct: 372 AIPGYEPDPSIKA 384 >gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster bacterium] Length = 434 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 178/338 (52%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ ++GY + +QE + L KD++ +AQTG+GKT F L + L + + Sbjct: 12 ILKAVKQQGYDKPSPIQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPILQLL--SKGKPT 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 ++ L + PTRELA QV + + V GGV ++ + + L+ G I+V Sbjct: 70 NSNQVRTLILTPTRELAAQVQDSVATYGKHLPLKSTVVFGGVKINPQMKKLRGGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +V DEAD MLD+GF DI+ IL P KR+ LMFSAT S Sbjct: 130 TPGRLLDLYSQNAVKFDQLEIIVFDEADRMLDMGFIHDIKRILKVLPPKRQTLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK+ + V V+ N + V S + + +++ H +VF Sbjct: 190 DEIRKLAKSLVHNPVEVSTTPRNTTVKSVKQWIHPVDKSKKQALLTKLIKDHSWYQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L + A+ G SQ R+ AL +DG+ V +ATD+AARGID+ Sbjct: 250 SRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRALADFKDGKVNVLVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +L V++ +L PE+ +HR GRTGRAG KG ++ ++ Sbjct: 310 IELPHVVNFDLPHVPEDYVHRIGRTGRAGSKGEAISLV 347 >gi|290955325|ref|YP_003486507.1| DEAD-box RNA-helicase [Streptomyces scabiei 87.22] gi|260644851|emb|CBG67937.1| putative DEAD-box RNA-helicase [Streptomyces scabiei 87.22] Length = 459 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/379 (32%), Positives = 204/379 (53%), Gaps = 11/379 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +++ G +Q A L L +DVL A+TGSGKT+AFGLAL L+ Sbjct: 33 GLPPALLRTMTDLGVTEPFPIQAATLPHALAGRDVLGRARTGSGKTLAFGLAL---LVRT 89 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R + + PLAL + PTRELA QV L GV + +GG+S+++++ L+ GA Sbjct: 90 AGRRAESKRPLALVLVPTRELAQQVTDALTPYAETLGVRLTTVVGGLSINKQQAALRAGA 149 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL D + + ++ ++ VLDEAD+M DLGF + IL+ P + L+F Sbjct: 150 EVLVATPGRLADLVSRRDCVLNQVRITVLDEADQMCDLGFLPQVSEILEQVPADGQRLLF 209 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L +++ D V ++ + +++ + + +D+ I G Sbjct: 210 SATLDRDVDQLVRDHLHDPVPASVDRVAGSVTTMEHHVLNIHGADKYATATEIAARDG-- 267 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+A V +FT+ L + AL SQ +R++ L +DG V +AT+VAA Sbjct: 268 RVLMFLDTKAGVDQFTRHLRASGVRAGALHSGKSQPQRTHTLGQFKDGLITVLVATNVAA 327 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + L+LV++ + ++ ++ LHR GRT RAG G V ++ N +R R+ +A + Sbjct: 328 RGIHIEALDLVVNVDPPADAKDYLHRGGRTARAGESGKVVTLVTPNQRRDVNRMMSDAGI 387 Query: 366 SVVWEPAPSVEAIRERDAQ 384 P+V +R +AQ Sbjct: 388 R------PTVTQVRSGEAQ 400 >gi|221124370|ref|XP_002163179.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Hydra magnipapillata] Length = 594 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 192/349 (55%), Gaps = 28/349 (8%) Query: 13 EALSERGYVNLTSVQEAILNPDL----REK-----DVLVSAQTGSGKTVAFGLALASTLL 63 +A + GY T+VQ+ + + EK D++VS+QTGSGKT AF L + TLL Sbjct: 55 QACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKTAAFLLPVLHTLL 114 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + A P AL + PTRELA QV + ++ + G+ VA +GG+ + LQ Sbjct: 115 FK------APTPGALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQ 168 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 N A++VV TPGRL D R + + ++ +V+DEAD MLDLGF DD+ I + +++ Sbjct: 169 N-ANLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLAEINQLTIDRKQT 227 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IV 236 +MFSAT +P I LA ++ RV I S +H++I + VL DNA + Sbjct: 228 MMFSATFAPRIQQLAARVMREPQRVTIDSPQEKHANI--KQVLFWA---DNAQHKRKLLD 282 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 + LR A+VF ST+ L + F VAL G LSQ R+ L +R G+ + Sbjct: 283 HWLRDTTINQAVVFASTQIECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQ 342 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +ATDVAARGID+P + V + L E+ HR GRTGRAGR G++V Sbjct: 343 ILVATDVAARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAV 391 >gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. B100] gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris] Length = 462 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T++Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTTPQPVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|197100123|ref|NP_001125347.1| probable ATP-dependent RNA helicase DDX23 [Pongo abelii] gi|67460452|sp|Q5RC67|DDX23_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName: Full=DEAD box protein 23 gi|55727779|emb|CAH90640.1| hypothetical protein [Pongo abelii] Length = 820 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 192/372 (51%), Gaps = 29/372 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L T L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456 Query: 64 AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + DR + P A+ +APTRELA Q+ E G+ IGG+S + L+ Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177 G IV+ TPGRL D + + L S VVLDEAD M+D+GF D++ IL+ P Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVPSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576 Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 K R+ +MF+AT+ PA+ LA++Y + V I S + H Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756 Query: 337 RAGRKGMSVFVI 348 RAG+ G+++ + Sbjct: 757 RAGKSGVAITFL 768 >gi|88798356|ref|ZP_01113941.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp. MED297] gi|88778796|gb|EAR09986.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp. MED297] Length = 433 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 182/335 (54%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++E+GY T +Q + L +D+L +AQTG+GKT F L + L+ EN R Sbjct: 12 ILKAVTEQGYTTPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPIIQHLITEN-RPV 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ L + PTRELA QV + T V V GGV ++ + + L+ G I+V Sbjct: 71 KANRCRVLVLTPTRELAAQVEDNVTAYAKYTDVRSEVVFGGVKINPQMQKLRRGVDILVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ L+ +VLDEAD MLD+GF DI I+ P +R+ LMFSAT S Sbjct: 131 TPGRLLDLHSQNAIDFRDLEVLVLDEADRMLDMGFIHDIRRIMRLLPTQRQNLMFSATFS 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK ++ V V++ +N + + + V + + ++++L+ +VF Sbjct: 191 DEIRALAKTIVENPVEVSVTPKNTTAERVRQQVIPVDKAKKTALLIDLLKKETWHQVLVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + L + A+ G SQ R+ AL + RV +ATD+AARGID+ Sbjct: 251 SRTKHGANRIAEKLNKAKIPAAAIHGNKSQGARTRALSEFKSNDIRVLVATDIAARGIDI 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 L VI+ +L + E+ +HR GRTGRAG G ++ Sbjct: 311 DQLPHVINFDLPNVAEDYVHRIGRTGRAGSDGDAI 345 >gi|332662165|ref|YP_004444953.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332330979|gb|AEE48080.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 451 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/347 (34%), Positives = 192/347 (55%), Gaps = 11/347 (3%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 Y T +QE + L KD++ AQTG+GKT AF L + + ++ + A+ L Sbjct: 21 YKTATPIQEKAIPIILEGKDLIGIAQTGTGKTAAFILPVLNEIIESGE----ANFIQTLV 76 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAHIVVGTPGRLC 136 I PTRELAVQ+ + +E TGV GG +E+ L +G IV+ TPGRL Sbjct: 77 IVPTRELAVQIDQVIEAYSYFTGVSSIAIYGGGDGKEFAQEKNALVSGVDIVIATPGRLI 136 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 H+ +N S L+ +VLDEAD M+D+GF+ D+ I+ P+KR+ L+FSAT+ ++ L Sbjct: 137 SHLNMGYVNFSKLRFLVLDEADRMMDMGFQPDLMRIIGKIPQKRQTLLFSATMPESVMKL 196 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 A+ +A V+IA ++ + RA +V + + +L+ + +VFCS++AS Sbjct: 197 ARQLTHNAESVSIAL-SKPAEGVTQRAYVVYEEQKLQLVTELLKDRKGQRIVVFCSSKAS 255 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 VS L V +S ++ Q +R + R+ + + +ATDV +RGID+ ++LV Sbjct: 256 VSSLYSKLHRKNLSVGQMSSDVEQDQREETMLAFRNSKIDIIVATDVISRGIDVDGIDLV 315 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF 360 ++ ++ +PE+ +HR GRT RA RKG ++ ++ Q RR E+L Sbjct: 316 VNYDVPRDPEDYVHRVGRTARAERKGEAITLVSPGDQLRFRRIEKLI 362 >gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis 12P80B1] Length = 581 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 205/369 (55%), Gaps = 12/369 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL++ GY T +Q + L +D+L+SAQTGSGKT AF L + + + + + Sbjct: 29 ILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---SRKPT 85 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA+QV + + +V +GG + R L+ G +++ Sbjct: 86 IEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGVQVII 145 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+R +++S L ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M SAT Sbjct: 146 ATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATW 205 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI 248 A+ +A+ + + +V+I E+ + ID + ++N ++ +L K A+ Sbjct: 206 DGAVGKIAERFTVNPEKVSIKVES---AHIDESVYYCDDFNHKNNILLQVLNNPKIKQAV 262 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +T+ S + L E F+ L G+L Q +R+ + M+ G+ V +ATDVAARGI Sbjct: 263 IFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGI 322 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFREAN 364 D+ + VI+ +L E+ +HR GR GRAGR G++V + + R+ E L R+ + Sbjct: 323 DISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKRQMS 382 Query: 365 VSVVWEPAP 373 VS + P Sbjct: 383 VSTIEGLEP 391 >gi|301059813|ref|ZP_07200707.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium NaphS2] gi|300446139|gb|EFK10010.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium NaphS2] Length = 429 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 185/348 (53%), Gaps = 20/348 (5%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K F P+V ++ GYV+ T +Q + L D++ AQTG+GKT AF L + Sbjct: 3 FKTFNFHPRVAAGVVAA-GYVDPTPIQARAIPQVLDNHDIMGVAQTGTGKTAAFVLPILH 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L+A+ + AL +APTRELA Q+ + +E L +T V GGV +H + + Sbjct: 62 RLMAKKSK-----GVRALIMAPTRELAEQIHQAIEVLGRETHVKSVTVYGGVGIHPQIEN 116 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++ AHIVV PGRL DH+ K ++ S L+ +V+DEAD+M D+GF DI IL PKKR Sbjct: 117 LKH-AHIVVACPGRLLDHMNRKTVDFSRLEMLVVDEADQMFDMGFLPDIRRILARLPKKR 175 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHS--DIDYRAVLVALSDRDNA 234 + L+FSAT+ P I L + + V I + E +H+ + + L Sbjct: 176 QTLLFSATMPPEIRRLEGDILINPSMVQIGAVAPAETVRHALYPVPHHLKTALLLKLLGD 235 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 V K+ +VF T+ K L + +L G LSQ R AL+ RDG Sbjct: 236 TV-------VKSVLVFTRTKYRAKSLGKKLVSAGYPCASLQGNLSQGRRQAALEGFRDGT 288 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 ++ +ATD+AARGID+ + VI+ ++ S PE +HR GRTGRA R G Sbjct: 289 YKILVATDIAARGIDITRVSHVINYDIPSTPEAYIHRIGRTGRATRSG 336 >gi|298708482|emb|CBJ30606.1| eukaryotic initiation factor 4A [Ectocarpus siliculosus] Length = 404 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/336 (34%), Positives = 186/336 (55%), Gaps = 13/336 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P L KD + AQ+G+GKT F A ++L + D A+ AL Sbjct: 50 GFEKPSAIQQRAVKPILMGKDCIAQAQSGTGKTATF----AVSILQKID--VAAADCQAL 103 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L + V C+GG +V + R LQNG HIVVGTPGR+ D Sbjct: 104 VLAPTRELAQQIVKVVRALGDFMQLQVHACVGGTAVRDDIRTLQNGVHIVVGTPGRVYDM 163 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I L + + VLDEADEML GF+D I + P++ ++ +FSAT+ + + Sbjct: 164 ISRGALRLDRVGLFVLDEADEMLSRGFKDQIYDVFQYLPERVQVALFSATMPLDVLEVTN 223 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254 + + VR+ + + I + V DR+ + + ++ AI++C+TR Sbjct: 224 RFMPEPVRILVKKDELTLEGIKQFYIAV---DREEWKLDTLCDLYETLTITQAIIYCNTR 280 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V ++ + E F + + G++ Q ER ++ R G +RV I TD+ ARGID+ + Sbjct: 281 RRVDWLSEKMQERDFTISCMHGDMGQGERDVIMREFRSGSSRVLITTDLLARGIDVQQVS 340 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 LVI+ +L +N EN +HR GR+GR GRKG+++ + Q Sbjct: 341 LVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTQ 376 >gi|148244979|ref|YP_001219673.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius okutanii HA] gi|146326806|dbj|BAF61949.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius okutanii HA] Length = 608 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/380 (34%), Positives = 205/380 (53%), Gaps = 13/380 (3%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I L GY + +QE + L KD++ AQTG+GKT AF L L + Sbjct: 22 TILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLLDKINLN---- 77 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHI 127 +AP L +APTRELA+QV ++ YA+ G V GG S + R L+ G H Sbjct: 78 --INAPQLLILAPTRELAIQVSEAVQT-YARGMKGFHVLPIYGGQSYDIQLRPLKRGVHA 134 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +VGTPGR+ DHI K L + +LK+ VLDEADEML +GF DDI++I+ P++R++ +FSA Sbjct: 135 IVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIALFSA 194 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKN 246 T+ I +AK + + I ++ + I + +V LS++ A+ IL Sbjct: 195 TMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKLEALTRILEVTVFDA 254 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F T+ + T+ L+ F A++G++ Q +R + + G+ + IATD+AAR Sbjct: 255 MIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKIDILIATDIAAR 314 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ + V++ ++ + E+ +HR GRTGRAGRKG ++ + +R + Sbjct: 315 GLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRERRMLNTIEHVTRQK 374 Query: 367 VVWEPAPSVEAIRERDAQRI 386 + PSV+ I +A+RI Sbjct: 375 ITPIELPSVKII---NAKRI 391 >gi|24112165|ref|NP_706675.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 301] gi|30062282|ref|NP_836453.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 2457T] gi|110804797|ref|YP_688317.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5 str. 8401] gi|24051003|gb|AAN42382.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301] gi|30040527|gb|AAP16259.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T] gi|110614345|gb|ABF03012.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401] gi|281600121|gb|ADA73105.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017] gi|313650305|gb|EFS14717.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str. 2457T] gi|332759696|gb|EGJ89999.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 4343-70] gi|332760467|gb|EGJ90756.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2747-71] gi|332763287|gb|EGJ93529.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671] gi|332767959|gb|EGJ98145.1| DEAD-box-containing ATP-dependent RNA helicase family member [Shigella flexneri 2930-71] gi|333006587|gb|EGK26086.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6] gi|333021182|gb|EGK40438.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304] Length = 406 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/373 (32%), Positives = 192/373 (51%), Gaps = 6/373 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 12 ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V Sbjct: 72 GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 132 TPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFS 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ + + + +A N + V + + +++ + +VF Sbjct: 192 DDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + + VA+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 252 TRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367 +L V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 Query: 368 V---WEPAPSVEA 377 +EP PS++A Sbjct: 372 AIPGYEPDPSIKA 384 >gi|238913888|ref|ZP_04657725.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 455 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|58429986|gb|AAW78361.1| vasa RNA helicase [Tribolium castaneum] Length = 580 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/351 (33%), Positives = 191/351 (54%), Gaps = 11/351 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71 E + + GY T++Q+ + L +D++ AQTGSGKT AF L + LL+ D+ P Sbjct: 171 ENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLS--DKNPPN 228 Query: 72 ----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + P+ + ++PTRELA+Q+ + + + V VAV GG S + +R + G HI Sbjct: 229 TENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHI 288 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPK--KRRML 183 +V TPGRL D + ++ + LK VLDEAD MLD+GF D+E +L S P +R+ L Sbjct: 289 LVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTL 348 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT + LA + + + + + +D++ + V+ D+ + +V+IL Sbjct: 349 MFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDKRSKLVSILEKAP 408 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F T+ + L+E Q ++ G+ Q ER AL + G +V +AT V Sbjct: 409 NERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGV 468 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 AARG+D+ D++ VI+ +L + + +HR GRTGR G KG + ++ R Sbjct: 469 AARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDEDQDR 519 >gi|125580822|gb|EAZ21753.1| hypothetical protein OsJ_05388 [Oryza sativa Japonica Group] Length = 516 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/353 (33%), Positives = 183/353 (51%), Gaps = 9/353 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + L E+G V T +Q L L +D++ A TGSGKT+ F L L L E Sbjct: 78 LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 137 Query: 67 DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRER 118 P P + I P+RELA Q +E + +CIGGV + + Sbjct: 138 MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQL 197 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 ++ G HIVV TPGRL D + K +N+ + + + LDEAD ++DLGF DDI + D Sbjct: 198 DVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 257 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AK+ V VN+ + D+ V R ++ Sbjct: 258 QRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 317 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ +VFC +A V + L + VA+ G Q+ER NA++ ++G+ V Sbjct: 318 LQ-KTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVL 376 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +ATDVA++G+D PD++ VI+ ++ + EN +HR GRTGR G+ G++ I +N Sbjct: 377 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 429 >gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272] gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227] Length = 454 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/370 (32%), Positives = 191/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + VA+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|226329076|ref|ZP_03804594.1| hypothetical protein PROPEN_02979 [Proteus penneri ATCC 35198] gi|225202262|gb|EEG84616.1| hypothetical protein PROPEN_02979 [Proteus penneri ATCC 35198] Length = 340 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 174/301 (57%), Gaps = 6/301 (1%) Query: 77 ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 +L + PTRELA QV EL L Y V+ +C GGV +R L + AHI+V TPGR Sbjct: 16 SLILCPTRELADQVANELRRLARYLPNIKVLTLC-GGVPFSIQRDSLIHAAHIIVATPGR 74 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L DH++ + + + +K +VLDEAD MLD+GF DDI I+ P R+ L+FSAT I Sbjct: 75 LLDHLKKETVTLDDVKTLVLDEADRMLDMGFFDDINDIISRMPTARQTLLFSATWPNEIA 134 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 T+++ Q++ + + I S + + ++ + ++ + + +L + +VFC+T+ Sbjct: 135 TISRKIQQNPITIEINSVDELPA-VEQQFYEISRHGKIGLLQKLLSREQPASCVVFCNTK 193 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 + L E V+AL G++ Q+ER L +G RV +ATDVAARG+D+ LE Sbjct: 194 RDCQDVYETLTESNQSVLALHGDMEQRERDQTLIRFANGSCRVLVATDVAARGLDIKALE 253 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP 373 +VI+ ELS +PE +HR GRT RAG G+++ F P+ +Q RA L ++ + W P P Sbjct: 254 MVINYELSWDPEVHVHRIGRTARAGESGLAISFCAPEEIQ-RANALEEMLHMKINWLPIP 312 Query: 374 S 374 + Sbjct: 313 T 313 >gi|16764183|ref|NP_459798.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992052|ref|ZP_02573150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16419327|gb|AAL19757.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329602|gb|EDZ16366.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246078|emb|CBG23880.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992563|gb|ACY87448.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157405|emb|CBW16894.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911844|dbj|BAJ35818.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226393|gb|EFX51444.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129127|gb|ADX16557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987751|gb|AEF06734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 454 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|114563961|ref|YP_751475.1| DEAD/DEAH box helicase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335254|gb|ABI72636.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina NCIMB 400] Length = 423 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/349 (34%), Positives = 195/349 (55%), Gaps = 3/349 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ +A+++ GY T VQ+A++ L +DVL SA+TG+GKT AF L L S L+ ++ Sbjct: 8 LPPLLLDAVNQSGYQTATPVQQAVIPLALDGRDVLASAETGTGKTAAFALPLLSHLMNQD 67 Query: 67 DR-FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 PA+ AL + PTRELA+Q+ + L + GG S++ +R+ L+ G Sbjct: 68 HSDLLPANRLRALIMTPTRELAIQIEQNLVKYSQFINLTSLAVYGGASINPQRKALEQGI 127 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D I L++S + +V+DEAD MLDLGF DIE + ++ + +MF Sbjct: 128 DILVATPGRLFDIIGQHELDLSFVTHLVIDEADRMLDLGFVKDIEKVKRLIARQHQTMMF 187 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S + TLA + V++ ++ +++ + V + + ++ H + Sbjct: 188 SATFSEDVKTLAAKMLNNPEYVHVETQTTA-ANVVQQVYQVDTRRKAELLSELIGKHNWQ 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF S + + + L+ + G+ SQ R+ AL+ + G+ RV IATD+AA Sbjct: 247 QVMVFTSRKETADHLYRELSLDGIKSSVFHGDKSQGARNRALEEFKTGQLRVLIATDLAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 RG+D+ L VI+ EL E+ +HR GRTGRAG G ++ V PQ ++ Sbjct: 307 RGLDIQALPRVINFELPEECEDYIHRIGRTGRAGLGGEAISLVSPQELE 355 >gi|260905466|ref|ZP_05913788.1| putative DEAD-box RNA helicase [Brevibacterium linens BL2] Length = 598 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 3/365 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+V+ E+L G +N +Q+ L L +DVL +TGSGKT+AF + + + L A Sbjct: 39 VPEVLTESLRAEGKINAFPIQQDTLPDTLAGRDVLGRGKTGSGKTLAFSIPMVTRLAAAK 98 Query: 67 DRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S S P L +APTRELA Q+ ++ L G+ GGV R+ L G Sbjct: 99 SAGSKRSRPPRGLILAPTRELATQITNVVDPLAQAYGMTTTTIFGGVKQKRQEVALNAGV 158 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL D ++ +++ H++ VLDEAD M DLGF + IL +P+ + + F Sbjct: 159 DIVVACPGRLEDLLQQGLVSLDHIEVTVLDEADHMADLGFLPSVTRILGKTPEHGQRMFF 218 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + + + V ++ + SD+ + V D N +V+ L G Sbjct: 219 SATLDNDVNKLVRRFLHNEVLHSVDDPSSHVSDMTHH-VFEVPDDNKNELVHRL-ASGTG 276 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ RF + L V L G LSQ R L +G +V +ATDVAA Sbjct: 277 RRIMFTRTKHRAKRFARQLTAQGIPAVDLHGNLSQGARDRNLAAFSEGDVKVLVATDVAA 336 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + +ELV+H + + + LHRSGRT RAG G V ++ +R + L R+A + Sbjct: 337 RGVHVDSVELVVHVDPPTEHKAYLHRSGRTARAGSSGEVVTIMLPEQRRDTQTLLRKAAI 396 Query: 366 SVVWE 370 V + Sbjct: 397 KVTPQ 401 >gi|288942044|ref|YP_003444284.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium vinosum DSM 180] gi|288897416|gb|ADC63252.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM 180] Length = 454 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/367 (33%), Positives = 196/367 (53%), Gaps = 7/367 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L+ GY T VQ ++ + D+LVSA TGSGKT AF L + + Sbjct: 10 LPDALMRGLANEGYTTPTPVQAQVIPLAMDGVDLLVSAATGSGKTAAFLLPIMQRFI--- 66 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 D + AL + PTRELA Q+ L + T + V GG S + L+ Sbjct: 67 DVPRHDGSTRALILVPTRELARQIHIHFMRLGSYTRLTSGVITGGESKAHQIATLRKNPE 126 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL + + N+ L+ +VLDEAD MLD+GF DD+ I+ S +R+ L+FS Sbjct: 127 ILVATPGRLLEFLETGQANLRDLEFLVLDEADRMLDMGFADDVLAIIRYSRPERQSLLFS 186 Query: 187 ATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGA 244 AT+ ++ + + +D RV++ +QH DI + +L L + ++ +LR+ Sbjct: 187 ATLEQRGLSQITERLLRDPQRVDVDPVRQQHPDIAHCMLLSDGLEHKQQQLLWLLRHETY 246 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + A++F +TR L +V L GEL Q+ER+ + ++ GR IATD+A Sbjct: 247 EKALIFTNTREGAVALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNTLIATDLA 306 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+P ++ V + +L ++ LHR+GRTGRAG G+++ ++ R E + R N Sbjct: 307 ARGIDVPGVQRVFNFDLPRRGDDYLHRTGRTGRAGEAGVAISLVGPPEWNRMESIARYLN 366 Query: 365 VSVVWEP 371 ++ +EP Sbjct: 367 LT--FEP 371 >gi|295131314|ref|YP_003581977.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137] gi|291375120|gb|ADD98974.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137] Length = 700 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 195/365 (53%), Gaps = 11/365 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64 +P I AL++ G + +Q A + + +DVL A TGSGKT+AFG+ L S L A Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295 Query: 65 -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 E++R P AL ++PTRELA+Q+ L L + G+ + GG+S + + + Sbjct: 296 REDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKR 349 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VV TPGRL D + ++S + VLDEAD M +LGF + + ILD+ P + L Sbjct: 350 GVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRL 409 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ A+ L + Y + V + + + + + A + ++ + I G Sbjct: 410 LFSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRSG 469 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + IVF T+ SR + L E AL G L+Q R+ L +DG V +ATDV Sbjct: 470 --HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDV 527 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGID+ D+ LV+ + N ++ LHRSGRT RAG G V ++ + +R RL+R+A Sbjct: 528 AARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQA 587 Query: 364 NVSVV 368 V V Sbjct: 588 GVKPV 592 >gi|147779855|emb|CAN61608.1| hypothetical protein VITISV_040122 [Vitis vinifera] Length = 413 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV V E PS Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVV--EELPS 407 >gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01] gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01] gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03] gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07] gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22] gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26] gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32] gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12] Length = 445 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 188/335 (56%), Gaps = 4/335 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+E+GY T +QE + L+ +D+L AQTG+GKT +F L + L+ +N R + Sbjct: 15 KALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEHLI-KNPRANTP 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L +APTREL Q+ + AV GGV R+ ++ G ++V P Sbjct: 74 KQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMRRGVDVLVAAP 133 Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL D + G+G +++S L+ +VLDEAD MLD+GF DI I+ P++R+ L+FSAT+ Sbjct: 134 GRLLD-LMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQTLLFSATMPR 192 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250 +I LA + D RV +A + I + V D+ +A++N++ A+VF Sbjct: 193 SIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNMVESPKVSRAVVF 252 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 + ++ + L ++ A+ G SQ R A++ R G +V +ATD+AARGID+ Sbjct: 253 TLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVLVATDIAARGIDV 312 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ V + +L + PE+ +HR GRT RAGR G +V Sbjct: 313 DDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAV 347 >gi|311271296|ref|XP_001928807.2| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus scrofa] Length = 844 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 133/400 (33%), Positives = 215/400 (53%), Gaps = 20/400 (5%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 249 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 308 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTRELA QV R+ + K + VA GG + + Sbjct: 309 LQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKK--LAVACFYGGTPYGGQIDRM 366 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DH++ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 367 RNGIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 426 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 427 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 486 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 487 VIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQ-DAQSLHGDIPQKQREITLKGFR 545 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LV+ + + E+ +HRSGRTGRAGR G+ + Sbjct: 546 NGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQHK 605 Query: 352 MQRRAERLFREANVSV--VWEPAPSVEAIR--ERDAQRIL 387 + + + ++A + + P+P+ E I+ +DA R+L Sbjct: 606 EEYQLTLVEQKAGIKFKRIGVPSPT-EIIKASSKDAIRLL 644 >gi|327294865|ref|XP_003232128.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892] gi|326466073|gb|EGD91526.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892] Length = 399 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 191/340 (56%), Gaps = 14/340 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T+L E+ Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRESQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG +V + R L++G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L ++K +VLDEADE+L+ GFR+ I I P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDIYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 LVI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374 >gi|319792321|ref|YP_004153961.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS] gi|315594784|gb|ADU35850.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS] Length = 667 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 133/386 (34%), Positives = 197/386 (51%), Gaps = 50/386 (12%) Query: 8 PQVIGEALSERGYVNLTSVQEAIL----------NPDLREKDVLVSAQTGSGKTVAFGLA 57 P++I A+++ G+ T+VQ+ ++ + R D++VS+QTGSGKT AF L Sbjct: 86 PELIA-AVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKTAAFLLP 144 Query: 58 LASTLL------------------------------------AENDRFSPASAPLALAIA 81 + TLL N R A+ P AL + Sbjct: 145 VLHTLLKRQAEAEAEAKAEFQRLAAEAAARGEAAPKKPKRKDPTNTRHFKAATPGALILC 204 Query: 82 PTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 PTRELA QV + +E + G+ +A +GG+ + LQN A +VV TPGRL D R Sbjct: 205 PTRELAQQVAHDAIELVRHCRGLRIANVVGGMPYQLQIAKLQN-ADLVVATPGRLLDLQR 263 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 + L + +K +V+DEAD MLDLGF DD+ + + ++++ +MFSAT +P I LA+ Sbjct: 264 SQQLKLDQVKFLVVDEADRMLDLGFSDDLAEVNQLTIERQQTMMFSATFAPRIQQLAQRV 323 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSR 259 ++ RV I S +H++I S +++ LR AIVF ST+ Sbjct: 324 MREPQRVTIDSPQEKHANIKQSLYWADNSQHKRKLLDHWLRDTSINQAIVFASTQVECDG 383 Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 L + F VAL G LSQ R+ L +R G+ ++ +ATDVAARGID+P + V + Sbjct: 384 LANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTITHVFNF 443 Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSV 345 L E+ HR GRTGRAGR G+++ Sbjct: 444 GLPMKAEDYTHRIGRTGRAGRDGLAI 469 >gi|167625498|ref|YP_001675792.1| ATP-dependent RNA helicase DbpA [Shewanella halifaxensis HAW-EB4] gi|167355520|gb|ABZ78133.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis HAW-EB4] Length = 469 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 184/329 (55%), Gaps = 7/329 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L GY ++T +Q L L +DV+ +TGSGKT AFGL L + L + R Sbjct: 27 LKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQ---- 82 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +E+ L + V GGV + + L++GAHI+VGTPG Sbjct: 83 --TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPG 140 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L++ ++ +VLDEAD ML++GF+ ++E I++ P +R+ L+FSAT I Sbjct: 141 RIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMERMPIERQTLLFSATFPEQI 200 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 ++A V V +AS + + + + +DR A+ +L + ++A+VFC+T Sbjct: 201 QSIADKIMFKPVMVKVASSHATSTIEQHFYEVGNNNDRMRALKLLLLQYRPESAVVFCNT 260 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + L F VVAL G+L Q++R L + + +ATDVAARG+D+ L Sbjct: 261 KRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDAL 320 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG 342 + VI+ ++ + E +HR GRTGRAG KG Sbjct: 321 DAVINYHVAYDTEVHIHRIGRTGRAGSKG 349 >gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155] gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155] Length = 502 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/360 (36%), Positives = 190/360 (52%), Gaps = 9/360 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G + ++QE L L D++ A+TG GKT AFG+ L + ++ +R Sbjct: 20 ALAENGIEHPFAIQELTLPLALAGDDLIGQARTGMGKTYAFGVPLLHRVSSDENR-PLTG 78 Query: 74 APLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHI 127 AP AL + PTREL +QV +L + L G V GG + L+ G + Sbjct: 79 APRALVVVPTRELCLQVYNDLAGAAKHLPTNDGRKFTVTSIYGGRPYEPQIEALRKGVDV 138 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGRL D + L + L +VLDEADEMLDLGF DIE IL +P R+ ++FSA Sbjct: 139 VVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILQLTPDSRQAMLFSA 198 Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 T+ I TLA+ + Q +R H A D+ + IL+ G Sbjct: 199 TMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTAQYAYRAHALDKVELVSRILQARGRG 258 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + + + LAE F+V A+ G+L Q R AL+ R G V +ATDVAA Sbjct: 259 ATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFRTGEIDVLVATDVAA 318 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ D+ VI+ + + + +HR GRTGRAG+ G+++ ++ + R E + + N+ Sbjct: 319 RGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITLVDWDELARWEMIDKALNL 378 >gi|329941644|ref|ZP_08290909.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045] gi|329299361|gb|EGG43261.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045] Length = 480 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 11/378 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + L + G +Q A L L +DVL +TGSGKT+AFGL + L Sbjct: 40 GLPPALLRVLGDHGVTVPFPIQAAALPDALAGRDVLGRGRTGSGKTLAFGLGM---LART 96 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R + PLAL + PTRELA QVG L G+ +A +GGVS+ R+ L++GA Sbjct: 97 AGRRAQPKEPLALVLVPTRELAQQVGEALTPYAEALGLRLATVVGGVSLGRQAAALRDGA 156 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL D + G + ++ V+DEAD M DLGF + +LD + ++F Sbjct: 157 EIVVATPGRLHDLVERNGCRLGRVRIAVVDEADRMSDLGFLPQVTGVLDQVRGDGQRMLF 216 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + Y ++ ++ + + ID+ LV DR I G Sbjct: 217 SATLDRDVDHLVRAYLREPAVHSVDPSSGAVAAIDHHVFLVHGPDRYAVTTEIAARDG-- 274 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ V + T+ L + AL SQ +R+ L +DG +AT+VAA Sbjct: 275 RVLLFLDTKHGVDQLTRHLRANGVAAAALHSGKSQPQRTGTLARFKDGGITALVATNVAA 334 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + DL+LVI+ + +++P++ LHR+GRT RAGR G V ++ +R ++ +A V Sbjct: 335 RGLHIDDLDLVINVDPATDPKDYLHRAGRTARAGRSGTVVTLVLSGQRRETSQVMTDAGV 394 Query: 366 SVVWEPAPSVEAIRERDA 383 + P V +R +A Sbjct: 395 T------PEVTKVRSGEA 406 >gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92] gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92] Length = 417 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/374 (32%), Positives = 202/374 (54%), Gaps = 16/374 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LS GY T++Q+ + L+ D++ +A+TGSGKT F L L ++ A Sbjct: 16 LSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLL-------EKLHSIPA 68 Query: 75 P-----LALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCI-GGVSVHRERRDLQNGAH 126 P AL + PTRELAVQV + ++ Y++ + +V I GG +++ + + L G Sbjct: 69 PGNNLTHALVLVPTRELAVQVSQSVDR-YSENCPRKIRSVAIYGGAAINPQMQSLSKGCD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL D +R L++ LKA+VLDEAD MLDLGF D+++ ILD +P + L+FS Sbjct: 128 IVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGNVQTLLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT + L + ++ V +++ E + RA+ V ++R + ++++ + Sbjct: 188 ATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQRAIEVDRNNRTMLLKHLIKQEKWQQ 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++F ++ + + L Q L G+L+Q+ER AL+ GR ++ IATD+AAR Sbjct: 248 LLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCKILIATDLAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GID+P L V++ +L + +HR+GRT RAG G+++ + + + + + Sbjct: 308 GIDIPSLPCVLNYDLPRATSDYVHRAGRTARAGEAGLAISFVDHESDAHFKLIEKRIRMK 367 Query: 367 VVWEPAPSVEAIRE 380 + E P E +E Sbjct: 368 IPREQIPGFERAQE 381 >gi|297579675|ref|ZP_06941602.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385] gi|297535321|gb|EFH74155.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385] Length = 464 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA I+V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|297846156|ref|XP_002890959.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336801|gb|EFH67218.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 539 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 192/338 (56%), Gaps = 13/338 (3%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---PLALAIAPTRELAVQVGREL 94 +D++ A+TGSGKT+AFG+ +L +N + S P L ++PTRELAVQ+ L Sbjct: 154 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKLGGGSKNVNPTCLVLSPTRELAVQISDVL 213 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 G+ GG S + +++G IV+GTPGRL D I L +S + VVL Sbjct: 214 SEAGEPCGLKSICVYGGSSKRPQINAIRSGVDIVIGTPGRLRDLIESNELRLSDVSFVVL 273 Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASEN 213 DEAD MLD+GF + + FIL + K R+M+MFSAT + LA+ + + ++V I S + Sbjct: 274 DEADRMLDMGFEEPVRFILSKTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVVIGSVD 333 Query: 214 RQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN--AIVFCSTRASVSRFTKVLAEHL 268 ++ D ++ L + RD +V +L +YH ++ +VF + R + L + Sbjct: 334 LA-ANHDVMQIIEVLDERARDQRLVALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRG 392 Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328 ++ V++ G +Q ER+ +L + ++G + +ATDVAARG+D+PD+E+VI+ E+ Sbjct: 393 WKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYSFPLTTEDY 452 Query: 329 LHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363 +HR GRTGRAG+KG++ F QN E + REA Sbjct: 453 VHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREA 490 >gi|225429488|ref|XP_002278119.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296081635|emb|CBI20640.3| unnamed protein product [Vitis vinifera] Length = 413 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV V E PS Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVV--EELPS 407 >gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum 3TCK] gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum 3TCK] Length = 464 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 183/339 (53%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EA++++GY + +Q + + KDV+ +AQTG+GKT F L + L + R Sbjct: 12 ILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVLERL-SNGPRVK 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL + PTRELA QV + LYAK + AV GGV ++ + L+ GA ++V Sbjct: 71 PNQV-RALVLTPTRELAAQVAESVA-LYAKNLPLSSAVVFGGVKINPQMMRLRQGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + + L+ +VLDEAD MLD+GF DI +L PK+R+ L+FSAT Sbjct: 129 ATPGRLLDLYNQRAVRFDQLEVLVLDEADRMLDMGFIRDIRKLLAVMPKQRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + V +++ N + V S + N + +L+ + +V Sbjct: 189 SDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLLTKLLKENNWGQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R T L + A+ G SQ R+ AL + +V +ATD+AARG+D Sbjct: 249 FTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVLVATDIAARGLD 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + L V++ EL E+ +HR GRTGRAG +G ++ ++ Sbjct: 309 IEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLV 347 >gi|325577716|ref|ZP_08147991.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC 33392] gi|325160461|gb|EGC72587.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC 33392] Length = 419 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/346 (33%), Positives = 191/346 (55%), Gaps = 5/346 (1%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P ++ +AL ++G+ T +Q L L+ KDV AQTG+GKT+AF A Sbjct: 11 FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 LL F+ S P AL +APTRELAVQ+ + E L +G+ A+ GG ++ + + Sbjct: 71 LLTHQPDFA-TSQPRALILAPTRELAVQINNDAELLAKTSGLRTALAYGGDGYDKQLKAI 129 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179 + G I++GT GR+ D+++ + + ++ VVLDEAD M DLGF DI ++L SP++ Sbjct: 130 EAGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQE 189 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT+S + LA + I E + I + D+ ++ ++ Sbjct: 190 RLTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELFYPSNEDKIPLLLTLM 249 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVF +T+ LA +V L+G+++Q++R + L+ DG + + Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFADGELDILV 309 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARG+ + D+ V + +L + E+ +HR GRTGRAG G+S+ Sbjct: 310 ATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSI 355 >gi|254459373|ref|ZP_05072794.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1] gi|207083986|gb|EDZ61277.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1] Length = 412 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/372 (30%), Positives = 201/372 (54%), Gaps = 4/372 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL + + T +QE ++ L +DV+ A+TGSGK+ ++ L + L + R Sbjct: 12 INKALVKHNFKEPTPIQEKVIPLVLDGRDVMAKAKTGSGKSASYILPILELL--QKRRGE 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + L + PTREL +QV + E + +T V IGG + + +Q G I+ Sbjct: 70 GKAKIKVLVLTPTRELTLQVAQAFENFGEFMQTKPKVVSVIGGEGIGDQLYAIQQGCDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V T GR D + K +N+SHL+ +VLDEAD+ML+LGF ++++ +L++ P+KR+ L+FSAT Sbjct: 130 VATSGRFLDVLSKKQMNLSHLEFLVLDEADKMLNLGFAEELDLVLEAIPEKRQNLLFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 I +A +D+V V+I + I R + V +R + ++++ K+ + Sbjct: 190 YPEKILNIASRITQDSVEVSIDEDVPTVDTIIQRVIEVNRDNRGPLLRHLIKSEKLKHIL 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF + + + + ++ F + G+L Q++R+ L RD + + ATD+AARG+ Sbjct: 250 VFMANKRATDNIAEKFRKYGFTAESFHGDLHQEDRTYTLNEFRDKKINILFATDIAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ ++E VI+ +L +P + +HR GRT RAG+ G+++ I Q + ++ V + Sbjct: 310 DIENIECVINFDLPRSPTDYIHRIGRTARAGKSGLAISFISFEDQAHFSVIEKKCKVKIE 369 Query: 369 WEPAPSVEAIRE 380 E E I E Sbjct: 370 KEQIEGFELIGE 381 >gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11] gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11] Length = 460 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 131/399 (32%), Positives = 207/399 (51%), Gaps = 24/399 (6%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q + + KDVL S++TGSGKT+AF L + L + FS + P A+ +APT Sbjct: 40 TEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-KNDPRAVILAPT 97 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA QV L + + GG + + + L+ +V TPGRL DH+ + Sbjct: 98 RELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNALRKHPKFIVATPGRLADHLEHQS 157 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS-PAITTLAKNYQ 201 L + L+ ++LDEAD MLDLGF + ++ I ++ +RR LMFSAT+ A+ A N Sbjct: 158 LYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMFSATLDHDAVNKFAGNML 217 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260 + R+++ N +H DI R L D AI+N I+ ++F +TR+ R Sbjct: 218 DNPKRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKIIETEDYFQIMIFTATRSDTDRL 277 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 TK+L E + VALSG+++Q R+N + ++ + TDVA+RG+DL + VI+ + Sbjct: 278 TKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTTDVASRGLDLTSVTHVINFD 337 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 + + E +HR GRTGRAG+KG ++ ++ P++ WE VE Sbjct: 338 MPKHMEEYVHRVGRTGRAGKKGTAISLVGPKD-----------------WESFKRVETFL 380 Query: 380 ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418 ++D + + L +G + K + K DP+K A Sbjct: 381 QQDLSFSVFEEL-KGKFKGLKPKHKRTFVKKGDPKKFKA 418 >gi|254380609|ref|ZP_04995975.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1] gi|194339520|gb|EDX20486.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1] Length = 504 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/362 (34%), Positives = 194/362 (53%), Gaps = 7/362 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + L+ G +Q A L L +DVL +TGSGKT+AFGLAL + + Sbjct: 82 DMPAQLLTTLTREGMATPFPIQAATLPNTLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 141 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + + PLAL + PTRELA QV L + +A +GG+ +HR+ L+ GA Sbjct: 142 S---AESGQPLALILVPTRELAQQVTAALTPYARAVKLRLATVVGGMPIHRQAGALRAGA 198 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184 +VV TPGRL D I ++ + VLDEAD+M D+GF + +LD P+ +RML Sbjct: 199 EVVVATPGRLKDLIDRGDCRLNQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 257 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ + L + Y D V ++ + +++ + V +D+ I G Sbjct: 258 FSATLDRNVDLLVRRYLTDPVVHSVDPSQGAVTTMEHHVLHVHGADKHRTTTEIAARDG- 316 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F T+ +V R T+ L + + AL G SQ +R+ L + G V +AT+VA Sbjct: 317 -RVIMFLDTKHAVDRLTQDLLDSGVRAAALHGGKSQPQRTRTLARFKTGHVTVLVATNVA 375 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGI + +L+LV++ + ++P++ LHR GRT RAG G V ++ N +R RL + A Sbjct: 376 ARGIHVDNLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRREMARLMQAAG 435 Query: 365 VS 366 ++ Sbjct: 436 IT 437 >gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia] Length = 475 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/370 (31%), Positives = 200/370 (54%), Gaps = 16/370 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F +P+ + E L R + +S+Q+AI+ DV+ A+TGSGKT+A+ L L Sbjct: 106 FNFLPESLQETLKARNITSPSSIQQAIMPLIFDGHDVIAIAETGSGKTLAYALPGIMHLQ 165 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 A+ P + P L +APTRELA Q+ + + L+AKT + GG+ + L Sbjct: 166 AQ----PPVAGPRILVMAPTRELAQQIQTQYD-LFAKTCCLY----GGIPKPHQYVSLSE 216 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 +++ TPGRL D I+G GL + + VVLDEAD MLD+GF D I +L K R+ L Sbjct: 217 TPQVIIATPGRLLDFIKG-GLTLKSITQVVLDEADRMLDMGFEDQIRDVLKEVRKDRQTL 275 Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 FSAT + LA + +D + + + + ++V++A ++ ++ Sbjct: 276 FFSATWPQEVQRLANSLCSQDPIFLQLGERGLSVNKNITQSVIIAGGNKFEQLIEYFNQI 335 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 K +VFC + + L++H L G+L Q +R +Q R+G+ I T+ Sbjct: 336 KDKKVLVFCQKKIDTQKLEYRLSQHGVNARYLHGDLKQNQRDYIMQDFRNGKVNCLITTN 395 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE---- 357 +A+RG+D+ D+++VI+ + N E+ +HR GRTGRAG+KG ++ F+ P+++ R + Sbjct: 396 LASRGLDVSDVDVVINYDFPENIEDYIHRIGRTGRAGKKGEALSFIQPRDLDYRLKDDLI 455 Query: 358 RLFREANVSV 367 ++F++++ + Sbjct: 456 KVFKQSSQEI 465 >gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 525 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 186/355 (52%), Gaps = 14/355 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ AL ++G ++ +Q L L +D++ A+TG+GKT+ F + + ++ Sbjct: 31 FDVEPEIVA-ALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILHDII 89 Query: 64 AENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 D + P AL I PTRELA QV E+ + GGV + Sbjct: 90 GPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFDSQVE 149 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G +VVGTPGRL D + L + ++ +V+DEADEMLD+GF D+E ++ P + Sbjct: 150 ALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQIPPR 209 Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDN 233 R ++FSAT+ + LA+ Y Q +R +++ RQ + YR V ++ Sbjct: 210 RHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYR---VHSLNKTE 266 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 I IL+ I+F T+ + R + LAE F A+ G+L Q R AL+ R G Sbjct: 267 VIARILQARNRGLTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHG 326 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V +ATDVAARGID+ D+ VI+ E + + +HR GRT RAG KG ++ I Sbjct: 327 KVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFI 381 >gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus corporis] gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus corporis] Length = 449 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 112/361 (31%), Positives = 195/361 (54%), Gaps = 7/361 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ DV AQ+G+GKT F +++ L + D + + AL Sbjct: 95 GFEKPSAIQQRAIMPCIKGHDVTAQAQSGTGKTATFSISI----LQQID--TSINECQAL 148 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L + CIGG +V + R L++G H+VVGTPGR+ D Sbjct: 149 ILAPTRELAQQIQKVVIALGDFMNAMCHACIGGTNVREDMRKLEHGVHVVVGTPGRVYDM 208 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I + L +K VLDEADEML GF+D I + + ++++ SAT+ + ++K Sbjct: 209 INRRCLRTDRIKIFVLDEADEMLSRGFKDQIHDVFQTLDVDVQVILLSATMPHDVLEVSK 268 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + ++ + + + + I + V + + + ++ A++FC+TR V Sbjct: 269 KFMRNPINILVQKDELTLEGIKQFYISVEREEWKFETLCDLYETLTITQAVIFCNTRRKV 328 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + + F V A+ G++ Q+ER ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 329 DMLTDFMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI 388 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 + +L SN EN +HR GR+GR GRKG+++ + + +R + + N ++ P + Sbjct: 389 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQDKRTLNDIEQFFNTHIIEMPMNVADL 448 Query: 378 I 378 I Sbjct: 449 I 449 >gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] Length = 460 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 131/399 (32%), Positives = 207/399 (51%), Gaps = 24/399 (6%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q + + KDVL S++TGSGKT+AF L + L + FS + P A+ +APT Sbjct: 40 TEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-KNDPRAVILAPT 97 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA QV L + + GG + + + L+ +V TPGRL DH+ + Sbjct: 98 RELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNALRKHPKFIVATPGRLADHLEHQS 157 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS-PAITTLAKNYQ 201 L + L+ ++LDEAD MLDLGF + ++ I ++ +RR LMFSAT+ A+ A N Sbjct: 158 LYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMFSATLDHDAVNKFAGNML 217 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260 + R+++ N +H DI R L D AI+N I+ ++F +TR+ R Sbjct: 218 DNPKRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKIIETEDYFQIMIFTATRSDTDRL 277 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 TK+L E + VALSG+++Q R+N + ++ + TDVA+RG+DL + VI+ + Sbjct: 278 TKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTTDVASRGLDLTSVTHVINFD 337 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWEPAPSVEAIR 379 + + E +HR GRTGRAG+KG ++ ++ P++ WE VE Sbjct: 338 MPKHMEEYVHRVGRTGRAGKKGTAISLVGPKD-----------------WESFKRVETFL 380 Query: 380 ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418 ++D + + L +G + K + K DP+K A Sbjct: 381 QQDLSFSVFEEL-KGKFKGLKPKHKRTFVKKGDPKKFKA 418 >gi|238878589|gb|EEQ42227.1| hypothetical protein CAWG_00429 [Candida albicans WO-1] Length = 529 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 114/318 (35%), Positives = 185/318 (58%), Gaps = 13/318 (4%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L KDV+ A+TGSGKT AFG+ + ++ + + + L I+PTRELA+Q+ L Sbjct: 153 LSGKDVIGVAETGSGKTFAFGVPAINKIITTGNTKTLS----VLCISPTRELALQIYDNL 208 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 L A +GV GGVS + R ++ A++VV TPGRL D I +N+ + +VL Sbjct: 209 IELTADSGVNCVAVYGGVSKDDQIRKIKT-ANVVVATPGRLVDLINDGAINLGKVNYLVL 267 Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213 DEAD ML+ GF +DI+ I+ ++S +R+ LMF+AT + LA N+ V+V + + Sbjct: 268 DEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRD 327 Query: 214 RQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA-----IVFCSTRASVSRFTKVLAE 266 ++ V+ ++ D++ ++ +LR + A + ++F + SR L Sbjct: 328 ELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKR 387 Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326 + F V A+ G+LSQQ+R+ AL + G++ + +ATDVAARG+D+P++++VI+ E Sbjct: 388 NRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIE 447 Query: 327 NLLHRSGRTGRAGRKGMS 344 + +HR GRTGRAG KG + Sbjct: 448 DYVHRIGRTGRAGAKGTA 465 >gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 460 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 189/364 (51%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T +Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTAPQTVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium vinosum DSM 180] gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM 180] Length = 438 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 176/335 (52%), Gaps = 3/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ +GY T +Q + L +DVL +AQTG+GKT AF L + L R Sbjct: 15 AIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPMLHLLSQSTQR---QR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AP AL + PTRELA QVG + + GGV + + L+ G I+V TPG Sbjct: 72 APRALVLTPTRELAAQVGESVSTYGQHLPLRALQIFGGVGMVPQTTALRRGVDILVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ +++S ++ VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 132 RLLDHVGQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQNLLFSATYSREI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D +R+ +A N + VA + + + +++ + ++F T Sbjct: 192 EQLAIGLLHDPLRIEVAPRNTAAETVTQVVHPVAREAKRSLLSHLILQGDWQQVLIFTRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L A+ G SQ R+ AL + G R +ATD+AARG+D+ L Sbjct: 252 KHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKSGALRALVATDIAARGLDIDRL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G +V +I Sbjct: 312 PHVVNFELPNVPEDYVHRIGRTGRAGSDGTAVSLI 346 >gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum] Length = 507 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/348 (34%), Positives = 193/348 (55%), Gaps = 15/348 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQ+I EA G+ T +Q + + +D++ AQTGSGKT AF + + LL Sbjct: 91 PQII-EACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAIPILQQLLQ--- 146 Query: 68 RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 SP PL AL ++PTRELA Q+ ++ E L A GV V +GG+ V ++ L H Sbjct: 147 --SPQ--PLFALILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVLARKPH 202 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+VGTPGR+ H+ KG ++ LK +V+DEAD +L + F ++I IL PK R +F Sbjct: 203 IIVGTPGRVMYHLENTKGFHLKALKFLVMDEADRLLSMDFEEEINKILKVIPKNRNTYLF 262 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNILRYH 242 SAT++ + L K + ++V +AS ++S +D + + +D + IL Sbjct: 263 SATMTSKVAKLQKASLVNPIKVQVAS--TKYSTVDTLVQQYCFIPYQHKDCYLTYILNEL 320 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +AIVF +T A+ +R + +L + ++G + Q +R +L + + +ATD Sbjct: 321 SGNSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSVKNILVATD 380 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 VAARG+D+P + LV++ ++ N + +HR GRT RAG+ G ++ ++ Q Sbjct: 381 VAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQ 428 >gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107] gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107] Length = 474 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 127/372 (34%), Positives = 198/372 (53%), Gaps = 8/372 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-A 72 A+++ GY T +Q+ + + D+L +AQTG+GKT F L L L + +P Sbjct: 15 AIADEGYSAPTPIQQQAIPAVINGGDILAAAQTGTGKTAGFTLPLLEKLSQRDPGKTPQG 74 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA QV + + AV GGVS++ + L+ G I+V T Sbjct: 75 RRPVRALILTPTRELAAQVHDSVRTYGKYLRLRSAVVFGGVSINPQMMTLRGGVDILVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + + + ++ +VLDEAD MLD+GF DI+ +L PK+R+ L+FSAT S Sbjct: 135 PGRLLDLVNQNAVYLQDVEILVLDEADRMLDMGFIHDIKKVLALLPKQRQNLLFSATFSD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + +A N + R + V + + +++ + +VF Sbjct: 195 DIKALADKLLNQPTLIEVARRNTASERVSQRVLPVDRHRKRELLSHLISGGNWQQVLVFT 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ ++ T+ L + A+ G SQ R+ AL+ + GR R IATD+AARGID+ Sbjct: 255 RTKHGANKLTEQLQDDGISAAAIHGNKSQGARTKALEDFKTGRIRALIATDIAARGIDID 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367 L V++ EL + PE+ +HR GRTGRA +G +V ++ + R E+L RE + Sbjct: 315 QLPYVVNYELPNVPEDYVHRIGRTGRAQAEGEAVSLVCVDEHSFLRDIEKLIKREIPREM 374 Query: 368 V--WEPAPSVEA 377 + +EP PS++A Sbjct: 375 ISGFEPDPSIKA 386 >gi|327262701|ref|XP_003216162.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Anolis carolinensis] Length = 420 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 56 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 109 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 110 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 169 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 170 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 229 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 230 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 289 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 290 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 350 NYDLPNNRELYIHRIGRSGRYGRKGVAI 377 >gi|212275354|ref|NP_001130628.1| hypothetical protein LOC100191727 [Zea mays] gi|194689682|gb|ACF78925.1| unknown [Zea mays] Length = 614 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 197/369 (53%), Gaps = 35/369 (9%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---------NDRF 69 GY + T VQ + + +D++ AQTGSGKT AF L + S L+A DR Sbjct: 99 GYESPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSGLVAPAGGGNGHGPRDRG 158 Query: 70 S---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 S A+ P AL +APTRELA Q+ E + +TG+ V V GG + + RDL+ G Sbjct: 159 SFDRVAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMFSQLRDLEKGVD 218 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRM 182 ++V TPGRL D + +++ +K +V+DEAD ML++GF I I+D + PKK R+ Sbjct: 219 LLVATPGRLVDLVERSRISLEAIKYLVMDEADRMLNMGFEPQIRKIVDMMNMPKKSVRQT 278 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT P I LA ++ + + V + ID + V ++ +++IL+ Sbjct: 279 MLFSATFPPEIQRLATDFLHNYIFVTVGRVGSSTDLIDQKIEFVNGGEKRGFLLDILQKQ 338 Query: 243 G---AKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +KN +VF T+ L + F ++ G+ +QQER AL+ + G Sbjct: 339 SVGLSKNKQPLTLVFVETKREADSLQYCLQSNGFSATSIHGDRTQQERERALKSFKSGAT 398 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + +ATDVA+RG+D+P++ VI+ +L + ++ +HR GRTGRAG+ G + Sbjct: 399 PILVATDVASRGLDVPNVAHVINYDLPKSIDDYVHRIGRTGRAGKAG------------K 446 Query: 356 AERLFREAN 364 A LF E+N Sbjct: 447 ATALFTESN 455 >gi|145347049|ref|XP_001417991.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578219|gb|ABO96284.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 346 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 183/333 (54%), Gaps = 39/333 (11%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL +RG L +Q+A+L P L +DV+ A+TG+GKT+AF L + LL + + Sbjct: 15 ALRKRGVDTLFPIQQAVLKPALSGEDVVGRARTGTGKTLAFALPVIERLLTDGTS-GRSR 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132 P + +APTRELA QV E+ + A + + VC+ GG + ++ L+ G IVVGTP Sbjct: 74 NPKCIVLAPTRELAKQVENEI-CITAPS--LETVCVYGGTPIGQQEGKLRRGVDIVVGTP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ D + + L++ ++ VVLDEAD+ML++GF +D+E IL P+ R+ +FSAT+ Sbjct: 131 GRVQDLMNRRSLDLGEIEFVVLDEADQMLNVGFEEDVEAILQDCPESRQTFLFSATMPSW 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + + K + K H +D K AI F Sbjct: 191 VKQITKKFLKPG-----------HVVVDL----------------------DKKAICFTQ 217 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + T L + V L G+++Q +R LQ RD R V IATDVAARG+D+ D Sbjct: 218 TKRAADELTAALGRRVASEV-LHGDIAQAQRERTLQRFRDNRFSVLIATDVAARGLDISD 276 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++LVIH EL ++ E+ +HR GRTGRAG+ G ++ Sbjct: 277 VDLVIHYELPNDVESFVHRCGRTGRAGQLGAAI 309 >gi|299135820|ref|ZP_07029004.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8] gi|298601944|gb|EFI58098.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8] Length = 490 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 131/383 (34%), Positives = 208/383 (54%), Gaps = 31/383 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +I Q + + L+ G+V T VQ + P L D+L +A TG+GKT++F L+ Sbjct: 36 DISQPLKDRLAAAGFVTPTPVQAGAIPPALEGDDILATASTGTGKTLSF-------LIPM 88 Query: 66 NDRFSPASAP---------LALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGV 112 DR S P LAL + PTRELA+QV L+ + + V VC GG+ Sbjct: 89 IDRLEEISKPSTRGAKNPILALILLPTRELAMQV---LDSYFKICPTLKSDAVLVC-GGL 144 Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172 S + + L G +VV TPGRL D +R + +++ + +VLDE D MLD+GF I+ I Sbjct: 145 SENTQLEQLSRGPRLVVATPGRLEDFLRRRSVSLKDVDMLVLDEVDRMLDMGFLPAIKRI 204 Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 + + PK R+ + +SAT+ +I + ++Y + VR+ I + ++ ++ R V + D+ Sbjct: 205 VQALPKDRQTMCYSATLDASIREIVRDYVNNPVRIEIGTTSKPSDRVELR-VYTVMQDQK 263 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNALQMM 290 A ++ + +VF T+ R K L A HL +V+ G+ SQ +R+ AL+ Sbjct: 264 LAQLDKMLKEEEGTYLVFSRTKHGADRIAKKLEKAGHLTEVI--HGDRSQSQRTAALRNF 321 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIP 349 G+AR+ +ATDVAARGID+ + V++ +L + ++ +HR GRTGRAG KG+ + FV P Sbjct: 322 TMGKARILVATDVAARGIDVSHIAHVVNYDLPNGSDDFVHRIGRTGRAGAKGVATTFVTP 381 Query: 350 QNMQRRAERLFREANVSVVWEPA 372 + A +L RE + W A Sbjct: 382 LE-KGDARKLERELKIKFQWHEA 403 >gi|281203514|gb|EFA77714.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium pallidum PN500] Length = 400 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/368 (32%), Positives = 192/368 (52%), Gaps = 10/368 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P+ + + G+ +++Q+ + P + D++ AQ+G+GKT F + + S + Sbjct: 34 DLPKDLLRGVYSYGFEKPSAIQQRAIMPLAKGLDIIAQAQSGTGKTATFTIGILSQI--- 90 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N A L IAPTRELA Q+ + + L + CIGG V + ++LQNG Sbjct: 91 NINLMKCQA---LIIAPTRELAQQIQKVVTSLGEYLKIKCYACIGGTRVSDDVQNLQNGV 147 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIVVGTPGR+ + + + +K VLDEADEML GF+D I I P ++ +F Sbjct: 148 HIVVGTPGRVYEMLSRGVITRESVKIFVLDEADEMLSRGFKDQIYEIFRLLPLDIQVGLF 207 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYHG 243 SAT++ ++ + K+ V++ + + I Y V A + + + ++ Sbjct: 208 SATMTEETLSITHKFMKEPVKILVKKDELTLEGIRQFYVNVGPAEQGKFDVLTDLYETLS 267 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +++FC+TR V T + E F V + G+ Q++R LQ R G RV I TD+ Sbjct: 268 ITQSVIFCNTRRKVDWLTTKMTEQQFTVSSTHGD--QKDRDGILQSFRSGTTRVLITTDL 325 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 ARGID+ + LVI+ +L N EN +HR GR+GR GRKG+++ I QN Q + + L Sbjct: 326 LARGIDVQQVSLVINFDLPLNLENYIHRIGRSGRFGRKGVAINFITQNEQEKIQDLCSHY 385 Query: 364 NVSVVWEP 371 N + P Sbjct: 386 NTFIQEMP 393 >gi|332305447|ref|YP_004433298.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172776|gb|AEE22030.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 412 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/336 (34%), Positives = 188/336 (55%), Gaps = 3/336 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY TS+Q+ ++ + KD+L SA TG+GKT AF L + LL + R P S Sbjct: 14 AVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQFLL-DYPRRHPGS 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + L + PTRELA QV + L T +V V GG++ ++ L+ I+V TPG Sbjct: 73 TRI-LILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDKETLEKNLDILVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA- 192 RL +HI + + ++ ++LDEAD MLD+GF + I + +++ ++FSAT+ A Sbjct: 132 RLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRKQSMLFSATLEGAG 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I+ AK+ D V + AS ++ I L + A++ + H ++A+VF Sbjct: 192 ISRFAKDILNDPVELEAASSRKEQGKIHQWLHLADDAKHKYALLKHILTHQVESAVVFVK 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR ++ ++L F V L GE+ Q +R+ ++ R G ++ IATDVAARGID+ + Sbjct: 252 TRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKILIATDVAARGIDVEN 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + VI+ ++ + +HR GRTGRAG KG ++ ++ Sbjct: 312 ISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLV 347 >gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1] gi|160358658|sp|A6QRQ7|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3 gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1] Length = 485 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 188/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY + T +Q + L+ +D++ A+TGSGKT AF L + L+ + P Sbjct: 72 EACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNK-----PQ 126 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L +APTRELA Q+ E L + V AV +GG+ + + L HI+V TP Sbjct: 127 SL-FGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATP 185 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +V+DEAD +LDL F ++ IL P++RR +FSAT+S Sbjct: 186 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSS 245 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q ++ L + +D +V +L + ++AIVF Sbjct: 246 KVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDIYLVYLLNEYAGQSAIVF 305 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 306 TRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDI 365 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ +L S+ + +HR GRT RAG+ G + ++ Q Sbjct: 366 PSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQ 405 >gi|121719103|ref|XP_001276289.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus clavatus NRRL 1] gi|142985525|sp|A1C595|FAL1_ASPCL RecName: Full=ATP-dependent RNA helicase fal1 gi|119404487|gb|EAW14863.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus clavatus NRRL 1] Length = 399 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/328 (33%), Positives = 180/328 (54%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVI------DTAVRETQAL 97 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 98 VLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADM 157 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 158 IRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 217 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VRV + + I + V + + + + ++ A++FC+TR V Sbjct: 218 KFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 277 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 278 DWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 337 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N EN +HR GR+GR GRKG+++ Sbjct: 338 NYDLPTNRENYIHRIGRSGRFGRKGVAI 365 >gi|71031306|ref|XP_765295.1| ATP-dependent RNA helicase [Theileria parva strain Muguga] gi|68352251|gb|EAN33012.1| ATP-dependent RNA helicase, putative [Theileria parva] Length = 470 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/351 (31%), Positives = 194/351 (55%), Gaps = 20/351 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A E G+ T +Q + L KD++ A+TGSGKT AF + + LL + R Sbjct: 55 ACKELGWKRPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQKLLEKPQRL---- 110 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +L +APTREL++Q+ +L L ++ G+ V + +GG+ + + L HI+VG+PG Sbjct: 111 --FSLILAPTRELSLQIKEQLISLGSEIGLDVCLILGGLDMVSQALQLSKKPHIIVGSPG 168 Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 R+ DH++ KG ++ +K +VLDEAD++L F D + I+ S PK + ++SAT++ Sbjct: 169 RIADHLQNTKGFSLETIKYLVLDEADKLLSTDFDDSLNKIITSLPKDKVTYLYSATMTSK 228 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 IT L K +++N+ ++ + + +L+ L + + IL + +VFC+ Sbjct: 229 ITKLQKVTLMKPIQINVNTKYHTSEHLIQKYLLIPLKFKYTYLACILWKYSTSTIMVFCN 288 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR-------------VCI 299 T + + T L F+ V L G+LSQ +R N+L + G+ + + + Sbjct: 289 TCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGKLQPIPQPHIISGLFNILV 348 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 TDV +RG+D+P ++LVI+ ++ + ++ +HR GRT RAG+ G+S+ +I Q Sbjct: 349 VTDVGSRGLDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQ 399 >gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis] Length = 640 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 187/340 (55%), Gaps = 10/340 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ RFS Sbjct: 219 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 278 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GGVS + R++ G ++V GT Sbjct: 279 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCNVVCGT 338 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + ++ L+ +VLDEAD MLD+GF D+ ++ S S + R+ LMFS Sbjct: 339 PGRLLDMIGRGK-VGLTKLRYLVLDEADRMLDMGFEPDMRRLVSSPGMPSKENRQTLMFS 397 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I LA ++ K D + + + SD++ + V + ++++L+ G + Sbjct: 398 ATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGME 457 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ G+ Q+ER AL R G+ V +AT VAA Sbjct: 458 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 517 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+PD++ V++ +L +N + +HR GRTGR G G +V Sbjct: 518 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 557 >gi|254482880|ref|ZP_05096117.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214036961|gb|EEB77631.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 465 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 188/338 (55%), Gaps = 8/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFS 70 +++ G+ + +Q +L L+ D + AQTG+GKT AF + + + L E +RF Sbjct: 97 GVADLGFQYSSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAFLITIFNDQLCHPIEGERF- 155 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVV 129 P AL IAPTREL +Q+ + L TG+ VA IGG+ ++ LQ +VV Sbjct: 156 -VGEPRALVIAPTRELVMQIAADAADLGKHTGLQVATLIGGMDYQKQLNRLQRDVIDLVV 214 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187 TPGRL D + + L + H++ +VLDEAD MLD+GF ++ I+ + P+K R+ L+FSA Sbjct: 215 ATPGRLLDFMGRRDLFLDHVEVLVLDEADRMLDMGFIPQVKRIVRACPRKESRQTLLFSA 274 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T + I L++ + + V V I ++ +D + +V+ R + N++R + Sbjct: 275 TFTQDIINLSQQWTYEPVTVEIEPDSVATDTVDQKIYMVSSEQRFRVLNNLVRSDDCSSV 334 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF + R V R + L + + LSGE+ Q +R+ L+ ++G V +ATDVA RG Sbjct: 335 IVFANRRDQVRRLHERLRKAGVKCGVLSGEIPQAKRTRTLEQFKNGEITVLVATDVAGRG 394 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 I + + V++ L +PE+ +HR GRTGRAG G S+ Sbjct: 395 IHVDGISHVVNYNLPEDPEDYVHRIGRTGRAGATGTSI 432 >gi|332994630|gb|AEF04685.1| ATP-dependent RNA helicase RhlB [Alteromonas sp. SN2] Length = 435 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/348 (33%), Positives = 190/348 (54%), Gaps = 6/348 (1%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P + +AL+ + N T +Q L P L D+ AQTG+GKT+AF +A Sbjct: 10 FSDLPINSKVVDALTAANFNNCTPIQALSLPPLLEGLDIAGQAQTGTGKTIAFLVATFHY 69 Query: 62 LL--AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 LL A+ND S + P A+ +APTRELAVQ+ + + L TG+ + + GG +R Sbjct: 70 LLSKADNDENSNSKGPRAIIMAPTRELAVQIFNDAKLLSEHTGLSLGLIYGGEGYQSQRE 129 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-- 177 L+ G I++GT GR+ D+ + +++++ VLDEAD M DLGF DI F+ P Sbjct: 130 TLEEGVDIIIGTTGRILDYYKQNVFTLNNIQVAVLDEADRMFDLGFIKDIRFLFRRLPPA 189 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 +R ++FSAT+S + LA + + V +A E + + + D+ +++ Sbjct: 190 TERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSDDDKMLLLLS 249 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 + AIVF +T+ S R T L +V LSG++ Q++R L+ G+ + Sbjct: 250 LFEEEWPDKAIVFANTKYSCERVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGKLDI 309 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+ + + V + +L + E+ +HR GRTGRAG+ G+++ Sbjct: 310 LVATDVAARGLHIDSVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAI 357 >gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001] gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001] Length = 488 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 188/335 (56%), Gaps = 4/335 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+E+GY T +QE + L+ +D+L AQTG+GKT +F L + L+ +N R + Sbjct: 63 KALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEHLI-KNPRANTP 121 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L +APTREL Q+ + AV GGV R+ ++ G ++V P Sbjct: 122 KQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMRRGVDVLVAAP 181 Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL D + G+G +++S L+ +VLDEAD MLD+GF DI I+ P++R+ L+FSAT+ Sbjct: 182 GRLLD-LMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQTLLFSATMPR 240 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250 +I LA + D RV +A + I + V D+ +A++N++ A+VF Sbjct: 241 SIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNMVESPKVSRAVVF 300 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 + ++ + L ++ A+ G SQ R A++ R G +V +ATD+AARGID+ Sbjct: 301 TLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVLVATDIAARGIDV 360 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ V + +L + PE+ +HR GRT RAGR G +V Sbjct: 361 DDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAV 395 >gi|127512383|ref|YP_001093580.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126637678|gb|ABO23321.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 441 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 203/392 (51%), Gaps = 20/392 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + L GY T +Q + L +D+L A+TGSGKT AF L L L+ + Sbjct: 30 NLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGAKTGSGKTAAFALPLLQKLVGQ 89 Query: 66 NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRER 118 R + AL + PTRELA QV G EL A V+AV GGVSV+ + Sbjct: 90 --RAGGGNHVGALVLVPTRELAQQVADSFISYGAEL----APRAKVIAV-FGGVSVNSQM 142 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L+ GA I+V TPGRL D + + +S LKA+VLDEAD ML+LGF +++ IL P Sbjct: 143 LALRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQLPD 202 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +++ L+FSAT + +L D V + + + Q +DI+ R V S++ + + Sbjct: 203 QKQTLLFSATFPEEVLSLTAKLLTDPVEIQM--QEAQSADIEQRVYTVNRSNKTALLAEL 260 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 ++ + +VF S + S + L + G+ +Q RS L ++G V Sbjct: 261 IKVRQWRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEITVL 320 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 IATD+AARGID+ L +VI+ EL +P + LHR GR+GRAG G ++ +I + + Sbjct: 321 IATDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHFKV 380 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDP 390 + ++ + + E P EA DA+ L P Sbjct: 381 IEKKNKLRLPREQYPGFEA----DAEAPLDCP 408 >gi|58259181|ref|XP_567003.1| Pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus neoformans var. neoformans JEC21] gi|134107275|ref|XP_777522.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var. neoformans B-3501A] gi|74687426|sp|Q5KNF8|PRP28_CRYNE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 gi|50260216|gb|EAL22875.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223140|gb|AAW41184.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 738 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 190/370 (51%), Gaps = 31/370 (8%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62 IP I + + E GY + +Q + ++ +D++ A+TGSGKT AF + + + Sbjct: 322 IPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLP 381 Query: 63 -LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L +++R P AL +APTRELA Q+ E G +GG SV ++ L Sbjct: 382 PLNDDNRHL---GPYALIMAPTRELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQFAL 438 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 ++GA I++ TPGRL D + L +S + VV+DEAD M+DLGF D+ FILDS P Sbjct: 439 RDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFV 498 Query: 180 -------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220 R +FSAT+ PA+ LA+ Y V I + ++ Sbjct: 499 KPDDSVALQPTKEGEWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVDTVE 558 Query: 221 YRAVLVALSDRDNA-IVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278 R V ++ A ++ ILR G IVF + + + K + + V L Sbjct: 559 QRVEFVHGDEKKKARLIEILRTIGLPPPIIVFVNQKKTADMVVKYVQQAGMSGVTLHSGK 618 Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338 SQ++R ALQ +RDG V +ATD+A RGID+PD+ LVI+ ++S E +HR GRTGRA Sbjct: 619 SQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRA 678 Query: 339 GRKGMSVFVI 348 G+ G+++ + Sbjct: 679 GKTGVAITFL 688 >gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239] gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239] Length = 523 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/351 (32%), Positives = 184/351 (52%), Gaps = 14/351 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL+++G ++ +Q L + D++ A+TG+GKT+ F + + ++ D Sbjct: 41 PEIVA-ALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDIIGPGD 99 Query: 68 R----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 AP AL + PTRELA QV E+ + + GGV + + L++ Sbjct: 100 EGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQIQSLKD 159 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGRL D ++ L + ++ +VLDEADEMLD+GF D+E ++ ++P +R + Sbjct: 160 GVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATPPERHTM 219 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVN 237 +FSAT+ + LA+ Y + A + RQ YR V +++ + Sbjct: 220 LFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYR---VHSMNKEEVVAR 276 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL+ I+F T+ S R L F A+ G+L+Q R AL+ R G+ V Sbjct: 277 ILQAKNRGLTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHGKVDV 336 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARGID+ D+ VI+ E + + +HR GRT RAG G +V + Sbjct: 337 LVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFV 387 >gi|224112054|ref|XP_002316069.1| predicted protein [Populus trichocarpa] gi|222865109|gb|EEF02240.1| predicted protein [Populus trichocarpa] Length = 569 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 203/369 (55%), Gaps = 13/369 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P I + G+V+ T +Q L+ +D++ A+TGSGKT+ G + + +L + Sbjct: 155 FPSEILRDIHSAGFVSPTPIQAQTWPIALQSRDIVAIAKTGSGKTL--GYLIPAFILLQQ 212 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 R + + P L +APTRELA Q+ E+ + ++ V C+ GG + ++L+ GA Sbjct: 213 RRNNAQNGPTVLVLAPTRELATQIQDEV-MKFGRSSRVSCTCLYGGAPKIPQLKELERGA 271 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV TPGRL D + K ++ + +VLDEAD MLD+GF I I++ P +R+ LMF Sbjct: 272 DIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQRQTLMF 331 Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH- 242 +AT + +A + V+VNI S + + I +V ++D + ILR Sbjct: 332 TATWPKEVRKIASDLLVHPVQVNIGSVDVLSANKSITQYVEVVPQMEKDRRLEQILRTQE 391 Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G+K AI+FCST+ + + + + F A+ G+ SQ ER AL R G++ + +AT Sbjct: 392 RGSK-AIIFCSTKRLCDQLARSIGRN-FGAAAIHGDKSQGERDWALNQFRSGKSPILVAT 449 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--R 358 DVAARG+D+ D+ +VI+ + S E+ +HR GRTGRAG G+S F Q+ + A+ + Sbjct: 450 DVAARGLDIKDIRIVINYDFPSGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAADLVK 509 Query: 359 LFREANVSV 367 L AN V Sbjct: 510 LLEGANQHV 518 >gi|262172952|ref|ZP_06040629.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451] gi|261890310|gb|EEY36297.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451] Length = 464 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ R Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPRVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA ++V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGADVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|258624900|ref|ZP_05719828.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] gi|258582898|gb|EEW07719.1| ATP-dependent RNA helicase [Vibrio mimicus VM603] Length = 451 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ R Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPRVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA ++V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGADVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243] gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1] gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus mulieris FB024-16] gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243] gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1] gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus mulieris FB024-16] Length = 523 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/351 (32%), Positives = 184/351 (52%), Gaps = 14/351 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL+++G ++ +Q L + D++ A+TG+GKT+ F + + ++ D Sbjct: 41 PEIVA-ALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDIIGPGD 99 Query: 68 R----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 AP AL + PTRELA QV E+ + + GGV + + L++ Sbjct: 100 EGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQIQSLKD 159 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G +VVGTPGRL D ++ L + ++ +VLDEADEMLD+GF D+E ++ ++P +R + Sbjct: 160 GVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATPPERHTM 219 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVN 237 +FSAT+ + LA+ Y + A + RQ YR V +++ + Sbjct: 220 LFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYR---VHSMNKEEVVAR 276 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL+ I+F T+ S R L F A+ G+L+Q R AL+ R G+ V Sbjct: 277 ILQAKNRGLTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHGKVDV 336 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARGID+ D+ VI+ E + + +HR GRT RAG G +V + Sbjct: 337 LVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFV 387 >gi|115444241|ref|NP_001045900.1| Os02g0150100 [Oryza sativa Japonica Group] gi|113535431|dbj|BAF07814.1| Os02g0150100 [Oryza sativa Japonica Group] Length = 460 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/353 (33%), Positives = 183/353 (51%), Gaps = 9/353 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + L E+G V T +Q L L +D++ A TGSGKT+ F L L L E Sbjct: 22 LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 81 Query: 67 DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRER 118 P P + I P+RELA Q +E + +CIGGV + + Sbjct: 82 MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQL 141 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 ++ G HIVV TPGRL D + K +N+ + + + LDEAD ++DLGF DDI + D Sbjct: 142 DVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 201 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AK+ V VN+ + D+ V R ++ Sbjct: 202 QRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 261 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ +VFC +A V + L + VA+ G Q+ER NA++ ++G+ V Sbjct: 262 LQ-KTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVL 320 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +ATDVA++G+D PD++ VI+ ++ + EN +HR GRTGR G+ G++ I +N Sbjct: 321 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 373 >gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220] gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220] Length = 447 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/370 (32%), Positives = 191/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLVTHQPHGKSRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G +++ TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLIATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KSLAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|224582633|ref|YP_002636431.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467160|gb|ACN44990.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 488 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/373 (32%), Positives = 191/373 (51%), Gaps = 6/373 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 12 ILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAK 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V Sbjct: 72 GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 132 TPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ ++ + + +A N + V + + ++ + +VF Sbjct: 192 DDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 252 TRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367 +L V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 Query: 368 V---WEPAPSVEA 377 +EP PS++A Sbjct: 372 TTPGYEPDPSIKA 384 >gi|74695852|sp|Q75EW9|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3 Length = 487 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 112/347 (32%), Positives = 194/347 (55%), Gaps = 10/347 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I EA + T +Q + P L+ KD++ AQTGSGKT AF + + + L + Sbjct: 74 VPELI-EACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQ 132 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 133 QPY------YACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 186 Query: 127 IVVGTPGRLCDH--IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRML 183 I++ TPGRL DH + +G + + +V+DEAD +L++ F ++ IL + P K R Sbjct: 187 IIIATPGRLMDHLEVHKRGFALRKQQFLVMDEADRLLNMKFGPVLDRILKNIPTKVRTTY 246 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 247 LFSATMTSKIDKLQRASLTNTVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEFI 306 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K IVF T+A+ R + + F AL G+L+Q +R+ AL + + G+ + +ATDV Sbjct: 307 GKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATDV 366 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 AARG+D+P ++LVI+ ++ + ++ +HR GRT RAGR G SV ++ Q Sbjct: 367 AARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQ 413 >gi|145219726|ref|YP_001130435.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205890|gb|ABP36933.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeovibrioides DSM 265] Length = 412 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 183/335 (54%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL E GY + T +Q + L+ D+L AQTG+GKT AF + + L E+ Sbjct: 12 ILQALQEEGYSHPTPIQAEAIPVVLKGGDILGCAQTGTGKTAAFAIPILQRL-GESRVQG 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +L + PTRELA+Q+G T + V GGV+ + + L+NG I+V Sbjct: 71 RIKKIRSLIVTPTRELAIQIGESFSAYGRHTPLTNTVIFGGVNQNPQISRLKNGVDILVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + +N+ ++ +VLDEAD MLD+GF DI +L + PK+++ L FSAT+ Sbjct: 131 TPGRLLDLMNQGFINLHDVEILVLDEADRMLDMGFIHDIRKVLAALPKEKQSLFFSATMP 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I L+ + ++++ + I+ + V ++ +V++L+ A+VF Sbjct: 191 PDIVRLSSTILHNPAKISVTPPSSTVEIINQQIYFVDKGNKSPLLVHLLKNPDITTALVF 250 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K L ++ A+ G +Q R AL + + RV +ATD+AARGID+ Sbjct: 251 TRTKHGADKVVKHLLKNGITAEAIHGNKAQNARQRALSNFKSQKTRVLVATDIAARGIDV 310 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +L+ VI+ + S+ PE +HR GRTGRAG G ++ Sbjct: 311 DELQHVINYDTSNIPETYVHRIGRTGRAGASGTAI 345 >gi|323268735|gb|EGA52195.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 404 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/373 (32%), Positives = 191/373 (51%), Gaps = 6/373 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 12 ILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAK 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V Sbjct: 72 GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 132 TPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ ++ + + +A N + V + + ++ + +VF Sbjct: 192 DDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 252 TRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367 +L V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 Query: 368 V---WEPAPSVEA 377 +EP PS++A Sbjct: 372 TTPGYEPDPSIKA 384 >gi|224088798|ref|XP_002308545.1| predicted protein [Populus trichocarpa] gi|222854521|gb|EEE92068.1| predicted protein [Populus trichocarpa] Length = 413 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 195/370 (52%), Gaps = 9/370 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + Sbjct: 46 NLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQ 101 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D AL +APTRELA Q+ + + L GV V C+GG SV ++R L G Sbjct: 102 LD--YDIVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGV 159 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ D +R + L ++K VLDEADEML GF+D I I P K ++ +F Sbjct: 160 HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 219 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ P + + + VR+ + + I V V + + + ++ Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +++F +TR V T + V A G++ Q R ++ R G +RV I TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ + LVI+ +L + PEN LHR GR+GR GRKG+++ + ++ +R + R N Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSDIQRFYN 399 Query: 365 VSVVWEPAPS 374 V+V E PS Sbjct: 400 VTV--EELPS 407 >gi|68484469|ref|XP_713845.1| hypothetical protein CaO19.8289 [Candida albicans SC5314] gi|68484548|ref|XP_713805.1| hypothetical protein CaO19.672 [Candida albicans SC5314] gi|74656226|sp|Q59W52|PRP28_CANAL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 gi|46435319|gb|EAK94703.1| hypothetical protein CaO19.672 [Candida albicans SC5314] gi|46435361|gb|EAK94744.1| hypothetical protein CaO19.8289 [Candida albicans SC5314] Length = 581 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 29/363 (7%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF----S 70 +S+ GY TSVQ A + L+++DV+ A+TGSGKT+AF + + + +L+ ++ + Sbjct: 183 ISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEK 242 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129 ++ P+ L +APTRELA+Q+ +E E K G V IGG + Q G H++V Sbjct: 243 ISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIV 302 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------ 177 TPGRL D I K +++S +V+DEAD M+D+GF D+ +LD P Sbjct: 303 ATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDGR 362 Query: 178 ----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI----DYRAVLVALS 229 +KR +MF+ATISP + L K Y D + I +I ++ + + Sbjct: 363 IFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEA 422 Query: 230 DRDNAIVNILRYHG--AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285 + N ++ I+R H +N I+F + + ++ L+ + V + G SQ R Sbjct: 423 TKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQ 482 Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 A+ R+ + V IATDVAARGID+P++ LVI+ ++ + +HR GRTGRAG G S Sbjct: 483 AITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESF 542 Query: 346 FVI 348 I Sbjct: 543 TFI 545 >gi|157126319|ref|XP_001654592.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] gi|108882564|gb|EAT46789.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] Length = 699 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 196/365 (53%), Gaps = 8/365 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I E +++G+ T++Q + L +D++ AQTGSGKT+A+ +A A + Sbjct: 129 LPDYILEEANKQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAY-IAPALVHITHQ 187 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 D+ P+AL +APTRELA Q+ + + GG + RDL+ GA Sbjct: 188 DQLRRGDGPIALVLAPTRELAQQIQQVATDFGQRINANNTCVFGGAPKGPQIRDLERGAE 247 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ TPGRL D + N+ +VLDEAD MLD+GF I I+ R++LM+S Sbjct: 248 IVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWS 307 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAK 245 AT + LA+ + D +++NI S N + + V V ++D ++ +L A+ Sbjct: 308 ATWPKEVRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLTEISAE 367 Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 N I+F T+ V T+ + + ++ V++ G+ SQQER L R+GR + +ATD Sbjct: 368 NETKTIIFVETKRRVDDITRNINRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGILVATD 427 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359 VAARG+D+ D++ VI+ + SN E+ +HR GRTGR+ G + + + +A L Sbjct: 428 VAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAGDLINV 487 Query: 360 FREAN 364 REAN Sbjct: 488 LREAN 492 >gi|91228785|ref|ZP_01262694.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] gi|91187660|gb|EAS73983.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] Length = 430 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 189/341 (55%), Gaps = 8/341 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +AL+E GY LT +Q+ + + D+ +AQTG+GKT AF L + LL N Sbjct: 10 PEVV-KALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLLDSNR 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 S +A AL +APTRELA Q+ ++ T + VA GG + + L+NG I Sbjct: 69 SASRKTAR-ALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVTALENGVDI 127 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184 +V TPGRL +HI ++++HL+ +V DEAD +LD+GF + I+ D+ P+ ++M Sbjct: 128 LVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQ---IMM 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT S + LAK+ + R+ + N + + V + + ++ Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNW 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K +VF + + + + K L + V G+ +Q R AL+ + G+ARV +ATDVA Sbjct: 245 KQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARVMVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+D+ DL V++ ++ E+ +HR GRTGRAG++G +V Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345 >gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1] gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea MMB-1] Length = 425 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 186/341 (54%), Gaps = 2/341 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ +GY + +Q + L KDV+ +AQTG+GKT F L + LL++ ++ + Sbjct: 12 ILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE-LLSKGEK-A 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 ++ AL + PTRELA QV + V GGV ++ + L+ G ++V Sbjct: 70 RSNNVRALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKLRRGVDVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ L+ +VLDEAD MLD+GF DI+ IL PK+R+ L+FSAT S Sbjct: 130 TPGRLLDLFSQNAISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPKERQTLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+N KDAV V++ N I + V S + A+ +++ +VF Sbjct: 190 DDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPVDKSKKSAALKFLIQSRDLSQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R + + + A+ G SQ R+ AL + G RV +ATD+AARGID+ Sbjct: 250 SRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIRVLVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 L V++ +L + P + +HR GRTGRAG G ++ ++ ++ Sbjct: 310 DQLPHVVNFDLPNVPADYVHRIGRTGRAGATGEAISLVSED 350 >gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis RH4] gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis RH4] Length = 577 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 206/369 (55%), Gaps = 12/369 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL++ GY T +Q + L +D+L+SAQTGSGKT AF L + + + + + Sbjct: 29 ILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---SRKPT 85 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA+QV + + +V +GG + R L+ G +++ Sbjct: 86 IEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGVQVII 145 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+R +++S L ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M SAT Sbjct: 146 ATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATW 205 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAI 248 A+ +A+++ + +V+I E+ + ID + ++N ++ +L K A+ Sbjct: 206 DGAVGKIAESFTVNPEKVSIKVES---AHIDESVYYCDDFNHKNNILLQVLNNPKIKQAV 262 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +T+ S + L E F+ L G+L Q +R+ + M+ G+ + +ATDVAARGI Sbjct: 263 IFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDLLVATDVAARGI 322 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFREAN 364 D+ + VI+ +L E+ +HR GR GRAGR G++V + + R+ E L R+ + Sbjct: 323 DISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKRQMS 382 Query: 365 VSVVWEPAP 373 VS + P Sbjct: 383 VSTIEGLEP 391 >gi|262193653|ref|YP_003264862.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365] gi|262077000|gb|ACY12969.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM 14365] Length = 497 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/337 (35%), Positives = 186/337 (55%), Gaps = 5/337 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND---RFS 70 A+ + GY N T +Q + P L +D+L AQTG+GKT AF L + L D R Sbjct: 15 AVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPILQRLAETGDGNARPR 74 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + P+ AL + PTRELA Q+G + + V GGV+ +R+ L+ G I+V Sbjct: 75 RGARPIRALIVTPTRELAAQIGDSMTTYGRHLPLRNTVIFGGVNQNRQVDALRRGIDILV 134 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + +++ L+ VLDEAD MLD+GF DI I+ + P +R+ L+FSAT+ Sbjct: 135 ATPGRLLDLMDQGYIHLDRLEVFVLDEADRMLDMGFIHDIRKIVAAVPSERQTLLFSATM 194 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAI 248 I +LA ++ V+V++ E+ ++ LV+ D+ + + +LR + Sbjct: 195 PGEIQSLAAGLLQEPVKVSVTPESTAAETVEQCVYLVSREDKQSLLTELLRDDPEMAKVL 254 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R K L++ A+ G SQ R AL+ + G RV +A+D+AARG+ Sbjct: 255 VFSRTKHGADRVAKRLSKSNIPAQAIHGNKSQNARLRALESFKRGDTRVLVASDIAARGL 314 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ L V++ +L + PE +HR GRTGRAG +G+++ Sbjct: 315 DIDALSHVVNFDLPNEPETYVHRIGRTGRAGCEGVAM 351 >gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix] gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix] Length = 441 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 178/335 (53%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL + GY T +Q + L+ D+L +AQTG+GKT F L + L Sbjct: 19 ALDQAGYKTPTPIQAQAIPEVLKGGDLLAAAQTGTGKTAGFTLPILQRLTTGQTPERKPG 78 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV + + GGV+++ + + L+ IVV TPG Sbjct: 79 RPRALILTPTRELAAQVHDSVRTYGRHLSLKSMTIFGGVNMNPQIKALRGPMDIVVATPG 138 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI ++ PK+R+ LMFSAT S I Sbjct: 139 RLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRRLIGLMPKQRQNLMFSATFSGEI 198 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLA + V++A N + LV S + + +++R + +VF T Sbjct: 199 RTLASSLLNKPAEVDVAPRNTAAETVQQTVHLVESSRKRELLSHLIRSNDWGQVLVFTRT 258 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + A+ G SQ R+ AL+ + G V +ATD+AARG+D+ L Sbjct: 259 KHGANRLAQKLTQDGVPSEAIHGNKSQAARTKALKQFKTGAVPVLVATDIAARGLDIDQL 318 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G ++ ++ Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGSVGAALSLV 353 >gi|167753303|ref|ZP_02425430.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216] gi|167659234|gb|EDS03364.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216] Length = 476 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 114/343 (33%), Positives = 184/343 (53%), Gaps = 7/343 (2%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 + +T VQE + L +D++ AQTG+GKT A+ L L + LL E + + + + Sbjct: 21 FQEMTPVQEQTIPIILDGRDIIACAQTGTGKTAAYTLPLLNRLLLEGNEKNVVKS---VI 77 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQNGAHIVVGTPGRLC 136 I PTRELA Q+ + + V AV GG +++R LQ GA +V+ TPGRL Sbjct: 78 IVPTRELAQQIDMQFQGFSYYMPVSTAVIYGGGDGRGWDQQKRGLQMGADVVIATPGRLI 137 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 H+ +++SH+ ++LDEAD MLD+GF DDI I+ PK R+ LMFSAT+ P I + Sbjct: 138 SHLMNSRVDLSHVDYLILDEADRMLDMGFYDDIMQIVSYMPKSRQTLMFSATLPPKIRQM 197 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256 AK D VNIA ++ + I+ A + + + + + I+F S++ Sbjct: 198 AKQILNDPAEVNIAI-SKPNEAIEQGAYICYEGQKLGIVREMFSWPSESKTIIFSSSKQK 256 Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 V L V + +L Q++R + ++ + R+ +ATD+ ARGID+ D+ +V Sbjct: 257 VKELAHTLKRMKLDVAPMHSDLDQEKREQVMLDFKNNKVRILVATDIVARGIDIEDIGMV 316 Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 I+ ++ +PE+ +HR GRT RA G +V + + Q + R+ Sbjct: 317 INYDVPHDPEDYIHRIGRTARASATGRAVTFVNEEEQGKFHRI 359 >gi|311746403|ref|ZP_07720188.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1] gi|126575289|gb|EAZ79621.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1] Length = 399 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/340 (33%), Positives = 189/340 (55%), Gaps = 7/340 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ LSE+GY N+T++QE + L +D+L + TGSGKT AF + + L +F Sbjct: 65 VMMRNLSEKGYENMTNIQEQSIEALLEGRDLLGISNTGSGKTGAFLIPIIEHALKNPGQF 124 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 + AL + PTRELA+Q+ +E + L + A IGG +++ + + L H++V Sbjct: 125 T------ALIVTPTRELALQIDQEFKSLSKGMRLHSATFIGGTNINTDMKVLSRKLHVIV 178 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 GTPGRL D K L ++ +K +VLDE D MLD+GF +D++ ++ ++ + ++FSAT+ Sbjct: 179 GTPGRLLDLTNRKLLKLNQVKTLVLDEFDRMLDMGFVNDVKKLVGGMTQREQTMLFSATL 238 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAKNAI 248 P L ++ K+ V V I + + +I+ + V D+ + ++ + I Sbjct: 239 EPNQKNLIQSLLKNPVEVKINTGVSTNENIEQGIIRVPEGKDKFGMLADLFQNRAMDKVI 298 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R +K L + + + G SQ R+ ++ + G RV +ATDVAARGI Sbjct: 299 VFTETKRLADRLSKKLNQAGVKSGLIHGNKSQNFRNKTIEQFKSGETRVLVATDVAARGI 358 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ D+ VI+ +L ++ +HR GRTGRAG+ G ++ + Sbjct: 359 DVADVSHVINYQLPMTMDSYIHRIGRTGRAGKTGHAITFV 398 >gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix cholodnii SP-6] gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6] Length = 502 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 145/401 (36%), Positives = 215/401 (53%), Gaps = 32/401 (7%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEND 67 + I ++++ GY T VQ + P L+ D+ V + TGSGKT AF L AL L A ND Sbjct: 10 EAILKSVTAAGYDTPTDVQAQTIPPALQGLDLRVCSNTGSGKTAAFVLPALQRVLAARND 69 Query: 68 RFSPASA--------PLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRE 117 P+ A P L +APTRELA+QV + Y + G+ VA +GGV + Sbjct: 70 ---PSKARAKGQVCGPRVLVLAPTRELAMQVSKAAST-YGQHVAGLRVATIVGGVPYPAQ 125 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 L+ I++ TPGRL DH+ + ++ ++LDEAD MLD+GF +DIE I +S P Sbjct: 126 LAALRKPLDILIATPGRLIDHLNSGKAVLGDVEMLILDEADRMLDMGFIEDIERIAESLP 185 Query: 178 KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAI 235 ++R+ +M SAT + + LA K DA R+ I S H +I+ + + ++ + + Sbjct: 186 QERQTVMVSATFAGQVGRLADQILKSDAKRIEITSHTDNHENIEQQLLWADSIEHKAKLL 245 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ----VVALSGELSQQERSNALQMMR 291 ++L + A+VF ST+ R LA HL++ V L G + Q RS L +R Sbjct: 246 EHLLTEREMQQALVFTSTQ----RDADELAAHLYELGHAVAPLHGGMPQGRRSRTLMALR 301 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350 +G +V IATDVAARGID+P + VI+ L E+ +HR GRTGRAGR G ++ + + Sbjct: 302 NGEIKVLIATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRTGRAITLAERR 361 Query: 351 --NMQRRAERLFREA-NVSVV--WEPA-PSVEAIRERDAQR 385 M RR ++ + V+V+ EP P+ E R A R Sbjct: 362 DVGMIRRIQQFTTQTIPVTVIAGLEPTRPAPEMFLSRGAPR 402 >gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta] Length = 783 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E P L +APTRELA QV ++ + K + VA GG + + Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DHI+ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 306 RNGIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 484 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 583 >gi|125601387|gb|EAZ40963.1| hypothetical protein OsJ_25445 [Oryza sativa Japonica Group] Length = 414 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 112/333 (33%), Positives = 185/333 (55%), Gaps = 5/333 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q ++ L+ +DV+ QTGSGKT AF L + LL R A Sbjct: 2 GWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHR----PCFFAC 57 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA+Q+ ++ E L + + +V IGG+ + L H+VVGTPGRL DH Sbjct: 58 VLAPTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLDH 117 Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 + KG + + LK +VLDEAD++L + F+ ++ IL+ PK+RR +FSAT++ + L Sbjct: 118 LTNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKLR 177 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + K+ V+V +AS+ + +V +D ++++L +VF T S Sbjct: 178 RACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGSMIMVFVRTCEST 237 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 +L F+ +++SG++SQ +R AL R + + TDVA+RG+D+ +++VI Sbjct: 238 RLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDVVI 297 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + + N ++ +HR GRT RAG+ G +V ++ Q Sbjct: 298 NYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQ 330 >gi|118444590|ref|YP_878428.1| ATP-dependent RNA helicase [Clostridium novyi NT] gi|118135046|gb|ABK62090.1| ATP-dependent RNA helicase [Clostridium novyi NT] Length = 371 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/369 (31%), Positives = 195/369 (52%), Gaps = 8/369 (2%) Query: 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 MK F+N I + I + LS G + T +QE + KDV+ AQTG+GKT+AF L + Sbjct: 1 MKDFKNLGISKNIIDILSREGIKSPTPIQENSIEFIKMGKDVIAEAQTGTGKTLAFLLPI 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 + E++ L + PTRELA+Q+ E L + + GG + + Sbjct: 61 FENISLESNFVQ------VLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQL 114 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 + L+ +++ TPGRL DH+ + + LK +VLDEAD+ML +GF++++E I+ + K Sbjct: 115 KKLKGNIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIISYTSK 174 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 K + L FSAT++ + LA Y K+ V++ +E +I V + +A+ ++ Sbjct: 175 KHQTLCFSATMNSDVKKLAYRYMKEPKVVSVKAEEVTLKNIQQFVVETTDRRKQDALCSV 234 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L AI+FC T+ V + L + + L G+L+Q +R ++ ++ + Sbjct: 235 LDEDNPFMAIIFCRTKRRVDNLEEALHKRGYNCDKLHGDLAQAKRERVMKKFKNMDTQYL 294 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 IATDVAARG+D+ + V ++ N E+ +HR GRTGRAG +G + I +R E Sbjct: 295 IATDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLET 354 Query: 359 LFREANVSV 367 + +E +++ Sbjct: 355 IEKEIKLTI 363 >gi|150376621|ref|YP_001313217.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium medicae WSM419] gi|150031168|gb|ABR63284.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae WSM419] Length = 498 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 195/366 (53%), Gaps = 10/366 (2%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F+ + Q I L+ G+ T +Q + L+ +D++ AQTG+GKT AFGL + Sbjct: 1 MSTFKELGLSQEILATLTANGFEKPTPIQTQAIPLVLQGRDLIGLAQTGTGKTAAFGLPM 60 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 L A+ R P + AL +APTREL Q+ L+ KT + V V +GGVS++++ Sbjct: 61 IEKLQADGKRPDPRNI-RALILAPTRELVNQIATNLKLFVKKTPIKVGVVVGGVSINKQT 119 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L G I+V TPGRL D I K + ++ + +VLDEAD+MLDLGF D+ I PK Sbjct: 120 EQLARGVDILVATPGRLLDLISRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPK 179 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-N 237 R+ L+FSAT+ I LA Y D V+V + + ++ V D I+ Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVTRPGKAADKVEQYVHFVPGKDLKTTILKQ 239 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L + ++VF T+ + K L + F+ ++ G SQ +R AL+ RDG RV Sbjct: 240 TLTANPDGLSLVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRV 299 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356 +ATDVAARGID+P + V + +L + +HR GRT R GR G+++ F P + Sbjct: 300 LVATDVAARGIDIPGVTHVYNYDLPEVADAYVHRIGRTARNGRDGIAIAFCAPDEI---- 355 Query: 357 ERLFRE 362 RL R+ Sbjct: 356 -RLLRD 360 >gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118] gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118] Length = 462 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 189/364 (51%), Gaps = 1/364 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+GY T +Q+ + L D+L AQTG+GKT AFGL L L + Sbjct: 15 ALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTAPQTVNGPR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTRELA QV L + AV GGV + + L+ G +++ PG Sbjct: 75 KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192 RL DHI + +++S ++ ++LDEAD MLD+GF I+ IL P++ R+ L+FSAT Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + ++ +++ + N I +R V + + + ++++L + +VF Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ + ++ R V Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374 Query: 373 PSVE 376 P E Sbjct: 375 PGYE 378 >gi|158312770|ref|YP_001505278.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp. EAN1pec] gi|158108175|gb|ABW10372.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec] Length = 671 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 182/337 (54%), Gaps = 4/337 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E G + ++QE L L D++ A+TG+GKT+AFG+ + + A ++ Sbjct: 118 ALAEVGIIRPFAIQELTLPLALERTDIIGQARTGTGKTLAFGIPIVQVVTAPDEGAD--G 175 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P AL + PTREL VQV ++ G+ V GG + + L+ G IVVGTPG Sbjct: 176 RPQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLSALRAGVDIVVGTPG 235 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R K L+++ ++A+VLDEADEMLDLGF D+E IL P++R ++FSAT+ + Sbjct: 236 RLLDLARQKALDLAGVRALVLDEADEMLDLGFLPDVERILAFLPEQRHTMLFSATMPGPV 295 Query: 194 TTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 +LA+ + VR E R + D+ + +L+ A+VF Sbjct: 296 ISLARRFMTRPVHVRAEQPDEGRTVPNTQQHVFRAHALDKMEVLARVLQAESRGLAMVFV 355 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 TR + + + LA F + G+L Q +R AL+ R G+ V +ATDVAARGID+ Sbjct: 356 RTRRTADKVAEDLARRGFAAAPVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDVG 415 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V++ + + LHR GRTGRAG G++V + Sbjct: 416 GVTHVVNYQCPEDEHAYLHRIGRTGRAGGSGVAVTFV 452 >gi|325103156|ref|YP_004272810.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] gi|324972004|gb|ADY50988.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] Length = 411 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/364 (32%), Positives = 199/364 (54%), Gaps = 15/364 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F +P+ + E L G+ T +QE + L+ KD++ AQTG+GKT ++ L + + + Sbjct: 6 FNFVPE-LQEGLDSMGFSKATPIQEQTIPLVLQNKDIIACAQTGTGKTASYLLPVLNKIY 64 Query: 64 A-ENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGG--VSVHRERR 119 + ++ + L + PTRELA+Q+ +++ L Y +AV GG V +++R Sbjct: 65 QKQTEKIN------TLILVPTRELALQIDQQIMGLAYFTQATSIAVYGGGDGVDYEQQKR 118 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G +I+V TPGR+ H+ + L+ ++LDEAD MLD+GF DDI I+ P+K Sbjct: 119 SLREGVNIIVATPGRIIAHLTSGKIKFDSLEHLILDEADRMLDMGFYDDIVRIISYLPQK 178 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ L+FSAT+ P I LAK K VNIA ++ I+ A + + + +++IL Sbjct: 179 RQNLLFSATMPPRIRGLAKKILKHPAEVNIAI-SKPSEGINQLAYMAFDNQKGRLLMSIL 237 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + G K+ I+F S + +V L + + A +L Q +R + + G+ V + Sbjct: 238 KDGGFKSIIIFASKKETVKSINSELNKKGIKSEAFHSDLEQHQREEIMNRFKGGQLSVLV 297 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRA 356 TDV +RGID+ ++LV++ ++ +PE+ +HR GRT RA G ++ I QN R Sbjct: 298 GTDVISRGIDVVGIDLVVNYDVPPDPEDYIHRIGRTARAEATGTAITFINDKDQNKFHRI 357 Query: 357 ERLF 360 E+L Sbjct: 358 EKLI 361 >gi|217073124|gb|ACJ84921.1| unknown [Medicago truncatula] Length = 413 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/361 (33%), Positives = 193/361 (53%), Gaps = 7/361 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATF----CSGILQQLD--YSVTECQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTR+LA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRKLAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + + ++ ++VF +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVVFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 + +L + PEN LHR GR+GR GRKG+++ + + +R + + NV + P+ E Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQKFYNVLIEELPSNVAEL 412 Query: 378 I 378 + Sbjct: 413 L 413 >gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 430 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 189/341 (55%), Gaps = 8/341 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ +AL+E GY LT +Q+ + + D+ +AQTG+GKT AF L + LL N Sbjct: 10 PEVV-KALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLLDSNR 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 S +A AL +APTRELA Q+ ++ T + VA GG + + L+NG I Sbjct: 69 SASRKTAR-ALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVAALENGVDI 127 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184 +V TPGRL +HI ++++HL+ +V DEAD +LD+GF + I+ D+ P+ ++M Sbjct: 128 LVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQ---IMM 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT S + LAK+ + R+ + N + + V + + ++ Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNW 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K +VF + + + + K L + V G+ +Q R AL+ + G+ARV +ATDVA Sbjct: 245 KQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARVMVATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+D+ DL V++ ++ E+ +HR GRTGRAG++G +V Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345 >gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens] Length = 715 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E AP L +APTREL QV ++ + K + VA GG + + Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELCNQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DHI+ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 298 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 416 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 515 >gi|302654809|ref|XP_003019203.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517] gi|291182911|gb|EFE38558.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517] Length = 403 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 14/340 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T+L E+ Sbjct: 48 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRESQ-------- 99 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG +V + R L++G H+V GTPGR+ Sbjct: 100 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQHVVSGTPGRV 158 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L ++K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 159 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 218 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 219 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 278 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 279 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 338 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 LVI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 339 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 378 >gi|258620096|ref|ZP_05715135.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] gi|258587454|gb|EEW12164.1| ATP-dependent RNA helicase [Vibrio mimicus VM573] Length = 464 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ R Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPRVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV ++ + + + GA ++V Sbjct: 71 -ANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGADVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + +V +++ + +VF Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC 18224] gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC 18224] Length = 474 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/346 (33%), Positives = 191/346 (55%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IPQ+ EA GY T++Q + L+ +D++ A+TGSGKT AF L + L+ + Sbjct: 53 IPQLC-EACETLGYKAPTAIQAESIPLALQNRDLIGLAETGSGKTAAFALPILQALMDKP 111 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F L +APTRELA Q+ E L + V V +GG+ + + + H Sbjct: 112 QPF------FGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPH 165 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+ KG ++ LK +V+DEAD +LD+ F I+ IL P++RR +F Sbjct: 166 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRTFLF 225 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT+S + +L + + +RV+++S Q S + + + +D ++ +L H Sbjct: 226 SATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQYYMFIPHKHKDVHLIWLLNEHIG 285 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F T +R + F +AL G+LSQ R ++ R + IATDVA Sbjct: 286 QTTIIFTRTIHETNRLALLTRFLGFSAIALHGQLSQSSRLASISKFRSKTRSILIATDVA 345 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P ++LV++ +L+++ + +HR GRT RAG+ G ++ ++ Q Sbjct: 346 ARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQ 391 >gi|164687249|ref|ZP_02211277.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM 16795] gi|164603673|gb|EDQ97138.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM 16795] Length = 371 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/343 (33%), Positives = 179/343 (52%), Gaps = 9/343 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L + G T +QE + KD+L +QTG+GKT+AF L+ D SP Sbjct: 14 DTLKKNGIKTPTPIQEESILHIKNNKDILAQSQTGTGKTLAF-------LIPIFDSISPK 66 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + + L +APTRELA+Q+ E E L + V GG + + L+ +V+ T Sbjct: 67 NQNIQTLILAPTRELAIQIYNEAEKLNKDKNINVLAAYGGKDIKSQLNKLKRNIQLVIAT 126 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+ K +++S L +VLDEAD+M+ +GF+++IE I+ + KKR+ L FSAT+ Sbjct: 127 PGRLLDHLDRKSIDLSKLNTLVLDEADQMILMGFKNEIEAIIKETNKKRQTLCFSATLDS 186 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + LA Y KD V V I S+ I V + A+ +L AI+FC Sbjct: 187 QVKKLAYRYMKDPVEVTIKSKEITLETIKQEVVETTDRHKQEALCKVLDEDNPFMAIIFC 246 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V + LA + L ++ Q +R ++ R + IATDVA+RG+D+ Sbjct: 247 RTKRRVDALDEALAVKGYNCEKLHSDIPQAKRERIIKSFRKADLQYLIATDVASRGLDIT 306 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353 + + + ++ E+ +HR GRTGR G G + +FV P+N + Sbjct: 307 GITHIYNYDIPETSEDYIHRIGRTGRIGNDGYTCMFVDPKNTK 349 >gi|163803186|ref|ZP_02197068.1| ATP-dependent RNA helicase [Vibrio sp. AND4] gi|159173007|gb|EDP57841.1| ATP-dependent RNA helicase [Vibrio sp. AND4] Length = 437 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 189/342 (55%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65 PQVI E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL E Sbjct: 18 PQVI-EGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ LQ+G Sbjct: 77 HEGRKP-TQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 I++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S + LA + + V + E + I + D+ + ++ Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNKDKMTLLQTLIEEDW 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+F +T+ LA +V L+G++ Q++R L+ G + +ATDV Sbjct: 256 PDRAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGDVDLLVATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 316 AARGLHIPLVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSI 357 >gi|217972736|ref|YP_002357487.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS223] gi|217497871|gb|ACK46064.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] Length = 427 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 181/338 (53%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E YV+ T VQ A + L +DVL A TGSGKT AF + L L+ + Sbjct: 24 LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAY 83 Query: 75 PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA QV L K +V A GGVSV+ + + L+ GA ++V Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRAGADVLVA 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ + A+VLDEAD ML LGF +++ +LD+ P K++ L+FSAT Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L D + SE Q S I R + V + + ++++ H A++F Sbjct: 202 EEVRELTAKLLNDPLEYQFQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 S + + + + L++ G+ +Q R+ L ++G V IATD+AARGID+ Sbjct: 260 VSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L +VI+ +L +P + +HR GR+GRAG G++V +I Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357 >gi|116668332|pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 110/328 (33%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 20 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ------VRETQAL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQV + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 74 ILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 134 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 194 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 253 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 254 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 313 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG++V Sbjct: 314 NYDLPNNRELYIHRIGRSGRYGRKGVAV 341 >gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC 49242] gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC 49242] Length = 450 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 194/365 (53%), Gaps = 14/365 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 + +++ AL GY TS+Q + + +D+L AQTG+GKT AF L + + L A+ Sbjct: 8 GLAEILLRALDREGYETPTSIQAQAIPYLMEGRDLLGIAQTGTGKTAAFALPILNRLAAD 67 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNG 124 R +P +A L +APTRELA Q+ V V +GGVS HR + D L G Sbjct: 68 RRRPAPFTA-RTLVLAPTRELAAQIADSFRAYGQFMRPSVGVIVGGVS-HRPQIDMLARG 125 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 ++V TPGRL DHI L ++ + +VLDEAD MLDLGF I I+ PKKR+ L+ Sbjct: 126 LDVLVATPGRLLDHIASGKLKLAATEVLVLDEADHMLDLGFIVPIRQIVAKLPKKRQTLL 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ I LA++ ++ +V++ + LV + + ++ ++ Sbjct: 186 FSATMPKEIAGLAEDMLQNPAQVSVTPVATTAERVAQHVFLVDGGAKRDMLIELMNDADV 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIA 300 AIVF T+ R +AEHL A+ G SQ +R AL R GR RV +A Sbjct: 246 SRAIVFTRTKRGADR----VAEHLDAAGVGAEAIHGNKSQSQRIRALDAFRKGRTRVLVA 301 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAE 357 TD+AARGID+ + V++ EL PE +HR GRT RAG G ++ + + + R+ E Sbjct: 302 TDIAARGIDVDGVTHVVNYELPETPEAYVHRIGRTARAGASGRAISLCDNGERQLLRQIE 361 Query: 358 RLFRE 362 +L R+ Sbjct: 362 KLTRQ 366 >gi|315049467|ref|XP_003174108.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893] gi|311342075|gb|EFR01278.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893] Length = 403 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 14/340 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T+L E+ Sbjct: 48 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRESQ-------- 99 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG +V + R L++G H+V GTPGR+ Sbjct: 100 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQHVVSGTPGRV 158 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L ++K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 159 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 218 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 219 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 278 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 279 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 338 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 LVI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 339 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 378 >gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168] gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168] Length = 451 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/376 (32%), Positives = 194/376 (51%), Gaps = 7/376 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ A++E+GY T VQ+ + L +D++ SAQTG+GKT F L L L+ + Sbjct: 10 PEIL-RAIAEQGYREPTPVQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITQQP 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AL + PTRELA Q+G + + V GGVS++ + L+ G + Sbjct: 69 HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDV 128 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSA Sbjct: 129 LVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSA 188 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LA+ + + + +A N + V + + ++ + Sbjct: 189 TFSDDIKRLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQV 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AARG Sbjct: 249 LVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREAN 364 +D+ +L V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 Query: 365 VSVV---WEPAPSVEA 377 + +EP PS++A Sbjct: 369 PRMTTPGYEPDPSIKA 384 >gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163] Length = 472 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 187/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + F Sbjct: 65 EACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSF--- 121 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+ + E L + V AV +GG+ + + L HI+V TP Sbjct: 122 ---FGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATP 178 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P++RR +FSAT+S Sbjct: 179 GRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSS 238 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+++S Q S + + + +D +V +L ++ I+F Sbjct: 239 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSTIIF 298 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R + +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 299 TRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ +L ++ + +HR GRT RAG+ G+++ + Q Sbjct: 359 PSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ 398 >gi|159125976|gb|EDP51092.1| inositol 5-phosphatase, putative [Aspergillus fumigatus A1163] Length = 429 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/331 (34%), Positives = 182/331 (54%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T++ E Sbjct: 53 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQ-------- 104 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG ++ + R L G H+V GTPGR+ Sbjct: 105 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 163 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 164 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 223 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VRV + + I + V + + + + ++ A++FC+TR Sbjct: 224 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 283 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 284 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 343 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 344 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 374 >gi|16125088|ref|NP_419652.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15] gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000] gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter crescentus CB15] gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000] Length = 476 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 174/333 (52%), Gaps = 1/333 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+E+GY T +Q + L+ KD+L AQTG+GKT AF L + L AE+ + +P Sbjct: 15 KALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQRL-AEDRKPAPR 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L ++PTRELA Q+ + G+ V GGV + + L G ++V TP Sbjct: 74 RGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALAGGIDVLVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH+ K +S + VLDEAD+MLDLGF I I K R+ L FSAT+ Sbjct: 134 GRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTKNRQNLFFSATMPSE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V+V++A + ID R + + + + + IVF Sbjct: 194 IGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELFADTSFSRTIVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ R K L + ++ G+ +Q +R AL + G R +ATD+AARGID+ D Sbjct: 254 TKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALVATDIAARGIDVND 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ EL + PE +HR GRT R G+ G+++ Sbjct: 314 VSHVINYELPNVPEAYVHRIGRTARKGKDGIAI 346 >gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo] Length = 602 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 204/373 (54%), Gaps = 23/373 (6%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P Q L R L VQ P KD++ A+TG+GKT +F + L Sbjct: 39 FSNFPLSQNTINLLKARDVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEK 98 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L + + +P L + PTRELA+QV R+ + L K V C G + ++ + DL Sbjct: 99 LQSVSQDERRGRSPKVLVLVPTRELAIQVARDFKNLTRKLSVA---CFYGGAPYKAQFDL 155 Query: 122 -QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179 ++G I+VGTPGR+ DHI+ L++S++K VVLDE D MLD+GF + +E IL + KK Sbjct: 156 LKSGIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKG 215 Query: 180 ----RRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHS--DIDYRAVLVALSDRD 232 + L+FSAT + +AK Y KD +V++ + Q + +++ A+ S R Sbjct: 216 SENNPQTLLFSATCPRWVYDVAKKYMKDEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRV 275 Query: 233 NAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQM 289 + +I++ Y G+ IVFC T+ + L L Q +L G++ Q++R L+ Sbjct: 276 EVLGDIIQVYSGSHGRTIVFCETKKEANEL--ALNSALKQEAQSLHGDIPQKQREITLKG 333 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 R+G V IAT+VAARG+D+P+++LVI + ++ +HRSGRTGRAGR G+ + Sbjct: 334 FRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRAGICICF-- 391 Query: 350 QNMQRRAERLFRE 362 QR+ E L ++ Sbjct: 392 --YQRKEEDLLKQ 402 >gi|297197315|ref|ZP_06914712.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083] gi|197714892|gb|EDY58926.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083] Length = 469 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 198/379 (52%), Gaps = 13/379 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L E G +Q A L L +DVL +TGSGKT+AFGL L L+ Sbjct: 33 LPAPVLRTLGEHGVREPFPIQAATLPDALAGRDVLGRGRTGSGKTLAFGLPL---LVRTA 89 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + A PLAL + PTRELA QV L G+ +A +GG+S+ R+ L++GA Sbjct: 90 GQRAEAKQPLALILVPTRELAQQVSEALAPYAEALGLRMAAVVGGMSIGRQIAALRDGAE 149 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185 +VV TPGRL D + K + ++ VLDEAD+M DLGF + +LD P+ +RML F Sbjct: 150 VVVATPGRLHDLVERKACRLGRVRITVLDEADQMCDLGFLPQVTEVLDQVRPEGQRML-F 208 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L Y D V ++ + +D+ ++V DR I G Sbjct: 209 SATLDRDVDQLVSRYLHDPVVHSVDPSAGAVTTMDHHVLVVHGPDRYAVTTEIAARDG-- 266 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ V + T+ L AL SQ +R+ L ++G+ V +AT+VAA Sbjct: 267 RVLLFLDTKHGVDQLTRHLRGSGVHAAALHSGKSQPQRTRTLAQFKNGQVTVLVATNVAA 326 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RG+ + DL+LV++ + ++ ++ LHR+GRT RAG G V ++ +R RL EA + Sbjct: 327 RGLHVDDLDLVVNVDPPTDAKDYLHRAGRTARAGESGRVVTLVLSGQRRETSRLMAEAGI 386 Query: 366 SVVWEPAPSVEAIRERDAQ 384 P+V +R +A+ Sbjct: 387 E------PTVTKVRSGEAE 399 >gi|148978452|ref|ZP_01814926.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3] gi|145962359|gb|EDK27639.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3] Length = 436 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 189/343 (55%), Gaps = 6/343 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--A 64 +PQVI E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL Sbjct: 17 LPQVI-EGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTP 75 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 E++ P + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ ++ G Sbjct: 76 EHEGRKP-NQPRAIIMAPTRELAIQIYNDAESLVASTGIKAALAYGGESYDKQLGKIEEG 134 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRM 182 A I++GT GR+ D + K N++H++AVVLDEAD M DLGF DI F+ PK R Sbjct: 135 ADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLN 194 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT+S + LA + + V + E + I + + + ++ Sbjct: 195 MLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIKEELFYPSNEHKMALLQTLVEEE 254 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + AI+F +T+ LA +V L+G++ Q++R L+ G + +ATD Sbjct: 255 WPERAIIFANTKHKCELVWGHLAADGHRVGLLTGDVPQKKREKILEQFTQGDVDLLVATD 314 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 315 VAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|187926489|ref|YP_001892834.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J] gi|241665976|ref|YP_002984335.1| ATP-dependent RNA helicase DbpA [Ralstonia pickettii 12D] gi|187728243|gb|ACD29407.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J] gi|240868003|gb|ACS65663.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D] Length = 465 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 194/363 (53%), Gaps = 9/363 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P V+ L++ GY ++T +Q A L L D++ A+TGSGKT AF LAL + L A + Sbjct: 17 PAVLAN-LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLARLDARSF 75 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A+ + PTRELA QV +E+ L A+ V V GG + + L++GAH Sbjct: 76 DVQ------AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAH 129 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++VGTPGR+ DH+ L + LK +VLDEAD MLD+GF DDI ++ P R+ L+FS Sbjct: 130 VIVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPADRQTLLFS 189 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT I L++ ++ V + E S I R V S R +A+ +L+++ + Sbjct: 190 ATYPEGIAKLSQRILRNPKEVKL-EERHDDSKIRQRFYEVTDSQRLHAVGQLLKHYRPVS 248 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 + FC+T+ VL +AL GEL Q+ER L + V +ATDVAAR Sbjct: 249 TLAFCNTKQQCRDLLDVLRAQGIHALALHGELEQRERDQVLIQFANRSCSVLVATDVAAR 308 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ LE VI+ +++ +PE +HR GRTGRA G ++ + + R + Sbjct: 309 GLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADENGWALSLASMDEMGRVGNIEEAMGRE 368 Query: 367 VVW 369 V W Sbjct: 369 VEW 371 >gi|73996620|ref|XP_863121.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 7 [Canis familiaris] Length = 810 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/369 (31%), Positives = 188/369 (50%), Gaps = 33/369 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L L Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLMPLFLN 456 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P A+ +APTRELA Q+ E G+ IGG+S + L+ G Sbjct: 457 Q-------GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC 509 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177 IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 510 EIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDT 569 Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219 K R+ +MF+AT+ PA+ LA++Y + V I S + H + Sbjct: 570 DEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERV 629 Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 + + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 630 EQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKG 689 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRAG Sbjct: 690 QEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG 749 Query: 340 RKGMSVFVI 348 + G+++ + Sbjct: 750 KSGVAITFL 758 >gi|268563240|ref|XP_002638790.1| Hypothetical protein CBG05145 [Caenorhabditis briggsae] gi|187035232|emb|CAP25672.1| hypothetical protein CBG_05145 [Caenorhabditis briggsae AF16] Length = 400 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 187/336 (55%), Gaps = 11/336 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + L+ +DV+ AQ+G+GKT F +++ +L + AL Sbjct: 46 GFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ------VRETQAL 99 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 100 ILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 159 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ + I P ++++ SAT+ I + Sbjct: 160 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 219 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255 + D +R+ + + I + VA+ + + ++++ A++FC+TR Sbjct: 220 KFMTDPIRILVKRDELTLEGI--KQFFVAVDKEEWKFDTLIDLYDTLTITQAVLFCNTRR 277 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 V T + E F V ++ G++ Q++R ++ R G RV I+TDV ARG+D+P + L Sbjct: 278 KVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLISTDVWARGLDVPQVSL 337 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 VI+ +L +N E +HR GR+GR GRKG+++ + Q+ Sbjct: 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 373 >gi|253699589|ref|YP_003020778.1| DEAD/DEAH box helicase [Geobacter sp. M21] gi|251774439|gb|ACT17020.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21] Length = 453 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/324 (35%), Positives = 177/324 (54%), Gaps = 6/324 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GYV T +Q + + +DVL AQTG+GKT AFGL + L+ E L Sbjct: 20 GYVTPTPIQLQAIPSVVSGQDVLGLAQTGTGKTAAFGLPMLHRLVQEERGHV-----RGL 74 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ L + +T + GGV+++ + + L+ GA IVV PGRL DH Sbjct: 75 VLAPTRELAEQINEALNGMGKQTRLRSITVYGGVNINTQIKKLKEGAEIVVACPGRLLDH 134 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I +++S ++ +VLDEAD+M D+GF D+ IL + P KR+ LMFSAT+ I LA Sbjct: 135 ISQGTIDLSKVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLMFSATMPDDIRRLAH 194 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 ++ V V + S + + + V + + +L++ ++ ++F T+ Sbjct: 195 EILRNPVTVQV-SRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTESVLIFTKTKHRAK 253 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 R + L + ++ +L G LSQ R AL RDG ++ +ATD+AARGID+ + VI+ Sbjct: 254 RVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAARGIDVSLISHVIN 313 Query: 319 AELSSNPENLLHRSGRTGRAGRKG 342 ++ PE HR GRTGRA + G Sbjct: 314 YDIPDTPEAYTHRIGRTGRAAKTG 337 >gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 429 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 181/335 (54%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ +GY T +Q+ + L+ KDVL AQTG+GKT F L + L + + Sbjct: 15 AVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVLQRLQSSHAE-GQKR 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + AV GGVS++ +++ L G +VV TPG Sbjct: 74 HPRVLVLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQKLIKGVDVVVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ + +++S ++ +VLDEAD MLD+GF DI +L++ PKKR+ L+FSAT S I Sbjct: 134 RLLDHLQQRSIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKKRQTLLFSATFSKEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +LA + + + +N + V + + + + +VF T Sbjct: 194 KSLAAEFLHQPTEIQVTPQNTAAELVSQIVYPVDKKRKRELLSQKIGEENWQQVLVFTRT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + ++ ++ L + A+ G SQ R+ AL + G RV +ATD+AARGID+ L Sbjct: 254 KHGANKLSEQLGKDGITSAAIHGNKSQGARTKALANFKQGSVRVLVATDIAARGIDIDKL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + E+ +HR GRT RAG++G +V ++ Sbjct: 314 PHVVNFELPNVAEDYVHRIGRTARAGQEGHAVSLV 348 >gi|71897163|ref|NP_001025820.1| eukaryotic initiation factor 4A-III [Gallus gallus] gi|82197884|sp|Q5ZM36|IF4A3_CHICK RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|53127756|emb|CAG31207.1| hypothetical protein RCJMB04_3e17 [Gallus gallus] Length = 412 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 58 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 112 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 172 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 232 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 292 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 352 NYDLPNNRELYIHRIGRSGRYGRKGVAI 379 >gi|301154759|emb|CBW14222.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1] Length = 419 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/346 (33%), Positives = 191/346 (55%), Gaps = 5/346 (1%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P ++ +AL ++G+ T +Q L L+ KDV AQTG+GKT+AF A Sbjct: 11 FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 LL F+ + P AL +APTRELAVQ+ + E L +G+ A+ GG ++ + + Sbjct: 71 LLTHQPNFA-TNQPRALILAPTRELAVQINHDAELLARTSGLRTALAYGGDGYDKQLKAI 129 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179 + G I++GT GR+ D+++ + + ++ VVLDEAD M DLGF DI ++L SP++ Sbjct: 130 EAGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQE 189 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT+S + LA + I E + I + D+ ++ ++ Sbjct: 190 RLTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELFYPSNEDKIPLLLTLM 249 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVF +T+ LA +V L+G+++Q++R + L+ DG + + Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELDILV 309 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARG+ + D+ V + +L + E+ +HR GRTGRAG G+S+ Sbjct: 310 ATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSI 355 >gi|291242437|ref|XP_002741112.1| PREDICTED: eukaryotic translation initiation factor 4A-like [Saccoglossus kowalevskii] Length = 398 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 109/328 (33%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +++ TL + AL Sbjct: 44 GFEKPSAIQQRAVRPVVKGRDVIAQAQSGTGKTATFSISILQTLDTQ------VRETQAL 97 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 98 ILSPTRELAVQIQKVILALGDYMSVQCHSCIGGTNIGEDIRKLDYGQHVVSGTPGRVFDM 157 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++FSAT+ I + Sbjct: 158 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQIYDVYRYLPPATQVILFSATLPHEILEMTH 217 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + + +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 218 KFMTEPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 277 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER ++ R G +RV I TDV ARGID+ + LVI Sbjct: 278 DWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLITTDVWARGIDVQQVSLVI 337 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 338 NYDLPNNRELYIHRIGRSGRYGRKGVAI 365 >gi|251764757|sp|B5FZY7|IF4A3_TAEGU RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|197128100|gb|ACH44598.1| putative DEAD box polypeptide 48 [Taeniopygia guttata] Length = 410 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 56 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 109 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 110 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 169 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 170 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 229 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 230 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 289 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 290 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 350 NYDLPNNRELYIHRIGRSGRYGRKGVAI 377 >gi|114776507|ref|ZP_01451552.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans PV-1] gi|114553337|gb|EAU55735.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans PV-1] Length = 414 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 183/329 (55%), Gaps = 2/329 (0%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 Y T VQ + L+ +DV+ +AQTG+GKT F L + LLA+ R A+ AL Sbjct: 20 YTKPTPVQLESIPAILKGRDVMAAAQTGTGKTAGFTLPMLH-LLAQGPRVR-ANQVRALI 77 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 + PTRELA QVG + + + AV GGV ++ + L+ G I+V TPGRL D Sbjct: 78 LVPTRELAGQVGDSVVRYGVRLPLRSAVVFGGVKINPQMMKLRKGVDILVATPGRLLDLH 137 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 + + + L+ +VLDEAD MLD+GF D+++ IL P KR+ LMFSAT S I LAK Sbjct: 138 QQNAVRFNQLEILVLDEADRMLDMGFMDELKKILALLPVKRQNLMFSATYSDEIRALAKT 197 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259 V + + N + I++ V ++ + +++ + + +VFC T+ + R Sbjct: 198 IVHHPVEICVNPANSTATTIEHCLYPVDKQQKNALLKKLIKDNDWQQVLVFCKTKQAADR 257 Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 + L + A+ G+ SQ R+ AL ++ + +V +ATD+AARG+D+P L V++ Sbjct: 258 LVRFLEQQAISAAAIHGDKSQGARTRALSEFKNSQVQVLVATDLAARGLDIPQLPQVVNY 317 Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +L ++ +HR GRTGRAG G +V ++ Sbjct: 318 DLPHVAQDYIHRIGRTGRAGVSGQAVSLV 346 >gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114] gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114] Length = 431 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 190/338 (56%), Gaps = 2/338 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL+E GY LT +Q+ + + D+L +AQTG+GKT AF L + LL ++ Sbjct: 10 PEIV-KALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVIQQLL-DSK 67 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + + AL +APTRELA Q+ + T + V GG + + R L+ G I Sbjct: 68 KSATRRTARALILAPTRELAEQIAVNIADYIKYTSLTVTSVFGGKKMSSQERALEPGVDI 127 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL +HI + ++I++L+ +V DEAD MLD+GF + I I+ ++++FSA Sbjct: 128 LVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSPQIMLFSA 187 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S + LA + + R+++ EN S I + V + + ++ + Sbjct: 188 TSSAQMNKLASDILRKPKRISVDPENTTASTIAHVVYPVDEERKTELLSELIGRKNWQQV 247 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF + + + + K L + V G+ +Q R AL+ ++G+ARV +ATDVAARG Sbjct: 248 LVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATDVAARG 307 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +D+ DL VI+ ++ E+ +HR GRTGRAG+KG +V Sbjct: 308 LDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAV 345 >gi|115437508|ref|XP_001217828.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624] gi|121734188|sp|Q0CAS8|FAL1_ASPTN RecName: Full=ATP-dependent RNA helicase fal1 gi|114188643|gb|EAU30343.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624] Length = 399 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/331 (34%), Positives = 183/331 (55%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T++ E+ Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTVVRESQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG ++ + R L G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VRV + + I + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365 >gi|73964736|ref|XP_533130.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 isoform 1 [Canis familiaris] Length = 411 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378 >gi|296817029|ref|XP_002848851.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480] gi|302506162|ref|XP_003015038.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371] gi|238839304|gb|EEQ28966.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480] gi|291178609|gb|EFE34398.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371] gi|326469057|gb|EGD93066.1| eukaryotic initiation factor 4A-12 [Trichophyton tonsurans CBS 112818] gi|326480615|gb|EGE04625.1| eukaryotic initiation factor 4A-12 [Trichophyton equinum CBS 127.97] Length = 399 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 14/340 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T+L E+ Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRESQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG +V + R L++G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L ++K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 LVI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374 >gi|226306587|ref|YP_002766547.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] gi|229493625|ref|ZP_04387410.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121] gi|226185704|dbj|BAH33808.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] gi|229319586|gb|EEN85422.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121] Length = 500 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 192/364 (52%), Gaps = 9/364 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 IP V+ AL G +Q A + L +DVL TGSGKT+AFGL + L+ Sbjct: 21 GIPAVMVHALRRSGIDAPFPIQSATIPDVLAGRDVLGRGATGSGKTLAFGLPM---LVRL 77 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 S + P L +APTRELA+Q+ + L+ + G+ VA +GGV + R+ L G Sbjct: 78 KGGASKRNRPRGLVLAPTRELAIQIHKALDDAATEIGLRVANAVGGVPIKRQADILARGV 137 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL D + K + + + +DEAD M D+GF D++ ILD++PK + L+F Sbjct: 138 DLLIATPGRLLDLLEQKSVILDDVVITTIDEADHMADMGFIDEVAKILDTTPKDGQRLLF 197 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L Y ++ + A S +++ + V D+ + + +I G Sbjct: 198 SATLDGKVDDLVAGYLRNPASHSTAPPVATVSTMEHHLLFVDRDDKRSVVAHIASRAG-- 255 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVV--ALSGELSQQERSNALQMMRDGRARVCIATDV 303 I+F T+ V R + L HL V AL G +Q R+ L DG V +ATDV Sbjct: 256 RTIMFVKTKHGVDRLAQQL--HLIGVSAGALHGGKTQNNRTKTLASFSDGTTPVLVATDV 313 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARGI + D+ LV+H + + ++ LHR+GRT RAG G+ V ++ + E+L ++A Sbjct: 314 AARGIHVDDVTLVVHVDPPAEAKDYLHRAGRTARAGESGVVVTIVTDEERDSVEKLTKQA 373 Query: 364 NVSV 367 + V Sbjct: 374 GIKV 377 >gi|118579798|ref|YP_901048.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502508|gb|ABK98990.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM 2379] Length = 475 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/351 (33%), Positives = 197/351 (56%), Gaps = 10/351 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E +P+ + L++ G+V+ T +QE L L KDV AQTG+GKT AF + L Sbjct: 1 MKFSELPLPEPLQNGLADAGFVDCTPIQERTLPISLSGKDVAGQAQTGTGKTAAFLVTLF 60 Query: 60 STLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 + LL + SP P AL +APTREL VQ+ ++ + L + G+ + GGV + Sbjct: 61 TRLLKD----SPPEGTHHPRALILAPTRELVVQIEQDAQLLGRQCGLTIQAIYGGVDYMK 116 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 +R L+ GA +++GTPGRL D+++ K ++ ++ +V+DEAD M D+GF D+ FIL Sbjct: 117 QRDALREGADVIIGTPGRLIDYLKQKVYSLKQIEMLVIDEADRMFDMGFIADLRFILRRL 176 Query: 177 PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 P KR+ LMFSAT++ + LA + +V++ E +++ + ++ Sbjct: 177 PPFDKRQNLMFSATLNQRVMELAYEFMNMPEKVSVTPEKMTAENVEQVIYHASRKEKFPL 236 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 ++ +LR G + ++F +T+ L + F +SG++ Q++R L+ + G Sbjct: 237 LLGLLRRDGMERTMIFINTKREGEYLHDRLNANGFPCRLISGDVDQKKRLRILEQFKSGE 296 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + IATDVA+RG+ + + V++ +L + E+ +HR GRT RAG +G ++ Sbjct: 297 LPILIATDVASRGLHIDGVTHVVNYDLPQDCEDYVHRIGRTARAGAQGKAI 347 >gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2-like [Pongo abelii] Length = 783 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E P L +APTRELA QV ++ + K + VA GG + + Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DHI+ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 484 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 583 >gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 450 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 9/377 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ A++E+GYV T +Q+ + L+ +D++ SAQTG+GKT F L L LL +N Sbjct: 10 PEIL-RAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLE-LLVKNQ 67 Query: 68 RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P+ AL + PTRELA Q+G + + V GGVS++ + L+ G Sbjct: 68 PHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKLRGGVD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL D + + +++ +VLDEAD MLD+GF DI +L P +R+ L+FS Sbjct: 128 VLVATPGRLLDLEHQNAVKLDNVEILVLDEADRMLDMGFIHDIRRVLAKLPPRRQNLLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LA+ + + V +A N + V + + +++ + Sbjct: 188 ATFSDDIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSHMIGQGNWQQ 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AAR Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREA 363 G+D+ +L V++ EL + PE+ +HR GRTGRA G + V V + R ERL ++ Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367 Query: 364 NVSVV---WEPAPSVEA 377 + +E PS++A Sbjct: 368 IPRIETPGYEVDPSIKA 384 >gi|189425609|ref|YP_001952786.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ] gi|189421868|gb|ACD96266.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ] Length = 430 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 201/380 (52%), Gaps = 16/380 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+S GY T +Q + L +D++ SAQTG+GKT AF + L Sbjct: 7 NLHASIQKAISVCGYATPTPIQAEAIPQALSGRDLIASAQTGTGKTAAFIIPALERLA-- 64 Query: 66 NDRFSPAS-APLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + PA P L + PTRELA QV R +L + G +V GG+ + R Sbjct: 65 --KPGPAGIGPRVLVLTPTRELAAQVADSVARYGRFLRMRYGSIV----GGMPYPDQVRL 118 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ ++V TPGRL DH+ +++S ++ +VLDEAD MLD+GF D ++ I ++PKKR Sbjct: 119 LRQPVDLIVATPGRLIDHLERGRIDLSRVELLVLDEADRMLDMGFTDAVDQIAAATPKKR 178 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNIL 239 + L+F+AT+ + LA KD R+ I+S H I+ R L L + + ++L Sbjct: 179 QTLLFTATMDDPMARLAGRLLKDPSRIAISSPKENHDSIEQRMHLTDNLGHKHKMLHHLL 238 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 AI+F +T+ + L + AL G+++Q R+ L +R G+ R + Sbjct: 239 EDPTITQAIIFSATKRDADTLARDLYDRGLSAAALHGDMTQGARTRTLTNLRRGKVRFLV 298 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAER 358 ATDVAARG+D+ + VI+ +L E+ +HR GRTGRAG G+++ FV P + +R Sbjct: 299 ATDVAARGLDINGISHVINFDLPRAAEDYVHRIGRTGRAGATGVAISFVSPADAV-YLQR 357 Query: 359 LFREANVSVVWEPAPSVEAI 378 + R +V P +E + Sbjct: 358 IQRYTGQTVQMHTIPGLEPV 377 >gi|242765545|ref|XP_002340996.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC 10500] gi|218724192|gb|EED23609.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC 10500] Length = 497 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 190/354 (53%), Gaps = 16/354 (4%) Query: 4 FENIPQ---VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 F+ +P+ ++ E L + + TSVQ A +DV+ A+TGSGKT+AFGL Sbjct: 84 FDQLPERDNILYEPL--KNFSAPTSVQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLK 141 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 ++ + P S P A+ + PTRELA+Q+ +LE + V V GGV +R Sbjct: 142 NMVDSEKKLKP-SHPRAVILTPTRELAMQIYEQLEGYALRVSVKVTCIFGGVRKDEQREA 200 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+N A IVV TPGRL D +N+S +K +VLDEAD MLD GF DI+ I+ P R Sbjct: 201 LKNTA-IVVATPGRLKDLESEGAINLSKVKYLVLDEADRMLDKGFEQDIKDIVSPMPVSR 259 Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAI 235 R MF+AT A+ LA ++ +D V V + + + R ++ I ++ D++N + Sbjct: 260 RQTAMFTATWPVAVRNLANSFTQDPVMVTVGGKPSEDPRANTRIKQVVEVLDPRDKENRL 319 Query: 236 VNIL----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 IL R +VFC + R +++ + V + G+LSQ +R +L + Sbjct: 320 TQILGKLTRESPQGKILVFCLYKKEAMRIERLIQSRGYAVAGIHGDLSQSDRFKSLAAFK 379 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G + +ATDVAARG+D+P ++ V++ E+ +HR GRTGRAG G ++ Sbjct: 380 SGDVTILVATDVAARGLDIPAVKTVVNVTFPLTIEDYVHRIGRTGRAGADGHAI 433 >gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes] gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes] Length = 617 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 191/340 (56%), Gaps = 10/340 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S GYV T VQ+ L +D++ AQTGSGKT AF L + L+A+ RFS Sbjct: 196 ISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 255 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ +E T V V GGV+ + R+++ G +++ GT Sbjct: 256 IQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGGVNTGYQMREIEKGCNVLCGT 315 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + +S ++ +VLDEAD MLD+GF D+ ++ S S ++R+ LMFS Sbjct: 316 PGRLLDMIGRGK-VGLSKVRHLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEERQTLMFS 374 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I LA ++ K D + V + +D++ + V ++ ++++LR G++ Sbjct: 375 ATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFNKREQLLDLLRTIGSE 434 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ G+ Q+ER AL R G+ V +AT VA+ Sbjct: 435 RTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVAS 494 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+PD++ V++ +L + ++ +HR GRTGR G G +V Sbjct: 495 RGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAV 534 >gi|291165177|gb|ADD81193.1| vasa [Auxis rochei] Length = 627 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 187/340 (55%), Gaps = 10/340 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ RFS Sbjct: 208 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 267 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GGVS + R++ G ++V GT Sbjct: 268 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCNVVCGT 327 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + ++ L+ +VLDEAD MLD+GF D+ ++ S S + R+ LMFS Sbjct: 328 PGRLLDMIGRGK-VGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 386 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I +A ++ K D + + + SD++ + V + ++++L+ G + Sbjct: 387 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGTE 446 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ G+ Q+ER AL R G+ V +AT VAA Sbjct: 447 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 506 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+PD++ V++ +L +N + +HR GRTGR G G +V Sbjct: 507 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 546 >gi|239989321|ref|ZP_04709985.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 11379] Length = 527 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 131/379 (34%), Positives = 200/379 (52%), Gaps = 13/379 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + +AL+ G +Q A L L +DVL +TGSGKT+AFGLAL L Sbjct: 90 MPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTA 146 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R + A PLAL + PTRELA QV L + +A +GG+S+ R+ L+ GA Sbjct: 147 GRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQASALRGGAE 206 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185 +VV TPGRL D I + + + VLDEAD+M D+GF + +LD +P +RML F Sbjct: 207 VVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNPDGQRML-F 265 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + Y KD V ++ + +++ + V +D+ I G Sbjct: 266 SATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG-- 323 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ +V + T L + AL G SQ +R+ L + G+ V +AT+VAA Sbjct: 324 RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVLVATNVAA 383 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + +L+LV++ + ++ ++ LHR GRT RAG G V ++ N +R RL +A + Sbjct: 384 RGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAGI 443 Query: 366 SVVWEPAPSVEAIRERDAQ 384 + P V +R +A+ Sbjct: 444 T------PQVTQVRSGEAE 456 >gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales bacterium HTCC2181] gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales bacterium HTCC2181] Length = 427 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/385 (31%), Positives = 204/385 (52%), Gaps = 14/385 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ E GY T +Q + + K VL SAQTG+GKT AF L + L Sbjct: 7 NLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPILDKLTKN 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 S P L ++PTRELA Q+ ++ Y++ + ++ I GG+S + R Sbjct: 67 R---SEGRGPRVLIVSPTRELATQITDSIKK-YSRYLRINSITITGGISYGLQNRMFSKP 122 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I+V TPGRL D + K +N L+ ++LDEAD MLD+GF DI I +++ KK++MLM Sbjct: 123 IDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQMLM 182 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT P I +A+ + + V ++I + H +I L+ +D + +L H Sbjct: 183 FSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQ---LIYFADNQSHKQQMLD-HFI 238 Query: 245 KN-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 KN AI+F +T+ + + L + AL G++SQ R+ + + ++ + Sbjct: 239 KNDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILV 298 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 ATD+A+RGID+ ++ V + ++ E+ +HR GRTGRA KG+++ ++ + ++ Sbjct: 299 ATDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKI 358 Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384 R N+ + P +EA ++A+ Sbjct: 359 ERFTNLKIEIASIPGMEATILKEAK 383 >gi|242239842|ref|YP_002988023.1| DEAD/DEAH box helicase [Dickeya dadantii Ech703] gi|242131899|gb|ACS86201.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703] Length = 452 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 191/371 (51%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T VQ + L +D++ SAQTG+GKT F L L LL +N + Sbjct: 15 AVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ-LLNDNPPQAKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G + + V GGVS++ + L+ G I++ TP Sbjct: 74 RPVRALILTPTRELAAQIGDNVTAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILIATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S + +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLEHQNAVDLSKVDILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V + N + LV + + +++ + + +VF Sbjct: 194 IKALAGKLLTNPASVEVVRRNTPSELVTQHVHLVDKKRKRELLSHLIGQNNWRQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL +DG RV +ATD+AARG+D+ Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGEIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + V Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIERLLKRDIPRVAI 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 PGYEPDPSIKA 384 >gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio] gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio] Length = 759 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 125/393 (31%), Positives = 220/393 (55%), Gaps = 18/393 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q N KD++ A+TG+GKT +F + L L + + Sbjct: 181 LQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVPLVEKLQSGDQERRRGRP 240 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA+QV ++ + + K + V GG S + + +++G ++VGTPGR Sbjct: 241 PKVLVLAPTRELAIQVTKDFKDITRK--LSVTCFYGGSSYNPQIDAIRSGIDVLVGTPGR 298 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----RMLMFSATI 189 + DH++ L++S L+ VVLDE D+MLD+GF + +E IL +S KK + L+FSAT Sbjct: 299 IRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSASYKKDAEQKPQTLLFSATC 358 Query: 190 SPAITTLAKNYQKDA-VRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245 + +AK Y + + V++ + Q + +++ A+ S R + I ++++ Y G+ Sbjct: 359 PSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIACHWSQRASVIGDVIQVYSGSH 418 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ + + L + Q +L G++ Q++R L+ R+G V +AT+V Sbjct: 419 GRTIVFCETKKEATELS--LNTSIKQSAQSLHGDIPQKQREVTLKGFRNGSFEVLVATNV 476 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++LVI + ++ E+ +HRSGRTGRAGR G+ + + + + + + ++A Sbjct: 477 AARGLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAGRTGICICFYQRKEESQLKFVEQKA 536 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396 ++ P+ I + ++ ++ FLDS+ Sbjct: 537 GITFKRVGVPTAYDIIQSSSKDAVR---FLDSV 566 >gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens NRL30031/H210] gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens NRL30031/H210] Length = 463 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 178/335 (53%), Gaps = 5/335 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I A+S GY + T +Q + L +D++ SAQTGSGKT AF L L Sbjct: 9 NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123 +++ P P AL + PTRELA QV + YAK +GG S + R L Sbjct: 69 SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 ++V TPGRL D ++ ++ L+ ++LDEAD MLD+GF DDIE I++++P R+ L Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT A+ LA+ KD + + + Q + + ++ + +ILR Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F ST+A L E F L G++ Q R+ L +R GR ++ +ATDV Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338 AARGID+P + VI+ +L E+ +HR GRTG A Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGIA 340 >gi|42522929|ref|NP_968309.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] gi|39574125|emb|CAE79302.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100] Length = 656 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 184/349 (52%), Gaps = 16/349 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A+++ G+ T +Q L L D + A TG+GKT AFG+ L + S Sbjct: 58 AMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLIENI------DSTV 111 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL ++PTRELA+QV +L L K GV V GG S + ++ GAHIVV TP Sbjct: 112 KDTQALVLSPTRELALQVAEQLTLLGKKKGVRVVTIYGGASYRTQIDGIKRGAHIVVATP 171 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--------DSSPKKRRMLM 184 GRL D + K + + +K VVLDEADEML +GF++ +E IL DS R + Sbjct: 172 GRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSDSVRAACRTWL 231 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + L Y ++ V++ I+ V S + I +L+ Sbjct: 232 FSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTEVIGRLLQTLPE 291 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+FC T+ V+ VL + F +L G+ SQQER L+ + + +V +ATDVA Sbjct: 292 FYGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQRQVKVIVATDVA 351 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNM 352 ARG+D+ DL V++ L + E+ +HR GRTGR G+KG ++ ++ P+ + Sbjct: 352 ARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPEQL 400 >gi|126175005|ref|YP_001051154.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS155] gi|125998210|gb|ABN62285.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 427 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 181/338 (53%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E YV+ T VQ A + L +DVL A TGSGKT AF + L L+ + Sbjct: 24 LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAY 83 Query: 75 PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA QV L K +V A GGVSV+ + + L+ GA ++V Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRAGADVLVA 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ + A+VLDEAD ML LGF +++ +LD+ P K++ L+FSAT Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L D + SE Q S I R + V + + ++++ H A++F Sbjct: 202 EEVRELTAKLLNDPLEYQFQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 S + + + + L++ G+ +Q R+ L ++G V IATD+AARGID+ Sbjct: 260 VSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L +VI+ +L +P + +HR GR+GRAG G++V +I Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357 >gi|330831232|ref|YP_004394184.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565] gi|328806368|gb|AEB51567.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii B565] Length = 406 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/326 (36%), Positives = 184/326 (56%), Gaps = 8/326 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIAP 82 T +Q+ + L +D+L AQTGSGKT+AFGL L R PAS+ + L + P Sbjct: 24 TRIQQLAIPAALAGQDLLALAQTGSGKTLAFGLPLLQ-------RLDPASSQVQGLVLVP 76 Query: 83 TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142 TRELA+QV L+ G+ + GGV+ R++ +L G ++V TPGRL D + + Sbjct: 77 TRELAIQVTAALKEGAEALGLRIVTLCGGVAQERQQAELALGPQLLVATPGRLRDLLTQQ 136 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 L + L+ +VLDEAD +L++GF DI+ +L P R+ L+FSAT+ + TLA + Sbjct: 137 VLGLDGLQLLVLDEADRLLEMGFAPDIKALLGFIPADRQTLLFSATLPAELETLANGLLR 196 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 + R+ N ++I+ R LV S + A++++L+ +VF S R + Sbjct: 197 EPTRIEANPLNSVVNEIEERLYLVNKSSKVPALISLLKEQAWPQVLVFISARDDADGVAR 256 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 LA+ V AL GE Q R AL ++G+ RV +ATD+ ARGI + L +VI+ +L Sbjct: 257 KLAKAGIAVAALHGEKEQAVREQALGDFKEGKIRVLVATDLMARGIHVEALPVVINLDLP 316 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ +HR GRT RAGR+G+++ ++ Sbjct: 317 ASAPVYVHRIGRTARAGREGLAISLV 342 >gi|284992766|ref|YP_003411320.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284066011|gb|ADB76949.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus DSM 43160] Length = 508 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 133/378 (35%), Positives = 194/378 (51%), Gaps = 10/378 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +PQ + AL RG + ++Q + L L +DVL A TGSGKT+AFGL + + L E Sbjct: 33 GLPQQLVTALERRGIRHPFAIQASALPDALAGRDVLGKAATGSGKTLAFGLPMLARL-GE 91 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P AP AL + PTRELA QV L L GV + GG S++R+ + L+ G Sbjct: 92 TARRGP-RAPRALVLVPTRELAQQVFDNLAPLGQSIGVQLTTVYGGASMYRQIQQLRRGV 150 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 V+ TPGRL D I + + + V+DEAD M DLGF ++ +LD + + L+F Sbjct: 151 DAVIATPGRLQDLISQGEVTLDEVSVTVIDEADFMSDLGFLPVVQELLDQTRPDAQRLLF 210 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + TL + Y KD R + ++ A +A D+ + G Sbjct: 211 SATLDGEVDTLVRRYLKDPARHEVKRAGDDAPPAEHLAYSLAFRDKVPVTEQLAARPG-- 268 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ R L + A+ G L Q R AL+ D R+ V +ATDVAA Sbjct: 269 RTLIFVRTQLGADRLAGNLQAAGIKAEAIHGGLPQGARRRALEEFTDARSPVLVATDVAA 328 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LV+H + ++ + LHRSGRT RAG G+ V ++ + +A+R FR+A + Sbjct: 329 RGIHVDDVSLVLHYDPPADHKTYLHRSGRTARAGAGGVVVSLLLPDQVGQAKRRFRQAKI 388 Query: 366 SVVWEPAPSVEAIRERDA 383 P V +R DA Sbjct: 389 E------PEVSRVRPGDA 400 >gi|213620634|ref|ZP_03373417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 402 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/373 (32%), Positives = 191/373 (51%), Gaps = 6/373 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 12 ILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAK 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V Sbjct: 72 GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 132 TPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ ++ + + +A N + V + + ++ + +VF Sbjct: 192 DDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 252 TRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367 +L V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 Query: 368 V---WEPAPSVEA 377 +EP PS++A Sbjct: 372 TTPGYEPDPSIKA 384 >gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas naphthalenivorans CJ2] Length = 571 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/353 (35%), Positives = 186/353 (52%), Gaps = 7/353 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ I +A+ E+GY T +Q + L D+L AQTG+GKT AF L L Sbjct: 1 MKFEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLL 60 Query: 60 STLLAE----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 L E N R +A AL + PTRELA QV + + V GGV + Sbjct: 61 QRLSTEPRLTNRRG--VNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMG 118 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + L+ G I+V TPGRL DH L++S ++ ++LDEAD MLD+GF DI+ +L Sbjct: 119 AQIEKLRRGVDILVATPGRLLDHASQGTLDLSQVQILILDEADRMLDMGFIHDIKKVLAL 178 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 PK+++ L+FSAT S I LA ++ + + + N I V S + + Sbjct: 179 VPKQKQTLLFSATFSDEIRELANGLLRNPLSIQVTPRNTTVQRITQTIHPVGRSKKKALL 238 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +I+ H +VF T+ + + L + +AL G SQ R+ ALQ ++G Sbjct: 239 THIINEHNWSQVLVFTRTKFGANNVAEHLTKAGIPAMALHGNKSQTARTQALQGFKNGDI 298 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 R +ATD+AARGID+ +L V++ E+ + E+ +HR GRTGRAG G +V ++ Sbjct: 299 RALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGQAVSLV 351 >gi|315503693|ref|YP_004082580.1| dead/deah box helicase domain protein [Micromonospora sp. L5] gi|315410312|gb|ADU08429.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5] Length = 553 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 189/348 (54%), Gaps = 11/348 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL+ G ++QE L LR D++ A TG+GKT+ FG+ L + A ++ Sbjct: 34 EALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLERVFAPSEGSD-- 91 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTREL +QV ++L+ GV V GGV+ + L+ G I+VGTP Sbjct: 92 GVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALRKGVEILVGTP 151 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + K L + ++A+VLDEAD MLDLGF DD+E IL P+ R+ ++FSAT+ Sbjct: 152 GRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTMLFSATMPDP 211 Query: 193 ITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 I L++ + + V ++ + Q + + YR + ++ + IL+ G Sbjct: 212 IVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSL---NKVEIVARILQAEGRGLT 268 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++F T+ + R + L F V A+ G+L Q R AL+ R G+ +ATDVAARG Sbjct: 269 MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVATDVAARG 328 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ID+ + VI+ + + + HR GRTGRAG G++V FV +M R Sbjct: 329 IDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPR 376 >gi|302870034|ref|YP_003838671.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302572893|gb|ADL49095.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca ATCC 27029] Length = 553 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 189/348 (54%), Gaps = 11/348 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL+ G ++QE L LR D++ A TG+GKT+ FG+ L + A ++ Sbjct: 34 EALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLERVFAPSEGSD-- 91 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTREL +QV ++L+ GV V GGV+ + L+ G I+VGTP Sbjct: 92 GVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALRKGVEILVGTP 151 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + K L + ++A+VLDEAD MLDLGF DD+E IL P+ R+ ++FSAT+ Sbjct: 152 GRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTMLFSATMPDP 211 Query: 193 ITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 I L++ + + V ++ + Q + + YR + ++ + IL+ G Sbjct: 212 IVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSL---NKVEIVARILQAEGRGLT 268 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++F T+ + R + L F V A+ G+L Q R AL+ R G+ +ATDVAARG Sbjct: 269 MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVATDVAARG 328 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ID+ + VI+ + + + HR GRTGRAG G++V FV +M R Sbjct: 329 IDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPR 376 >gi|254786531|ref|YP_003073960.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901] gi|237683925|gb|ACR11189.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901] Length = 604 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 166/558 (29%), Positives = 271/558 (48%), Gaps = 39/558 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+P + + + + GY + +Q A + + +DV+ AQTG+GKT AF L + + + Sbjct: 16 NLPSSLLDTVRKLGYERPSPIQAATIPALIEGRDVIGMAQTGTGKTAAFALPILAKIK-- 73 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124 S + P AL + PTRELA+QV + A V GG + + R LQ G Sbjct: 74 ----SGSKNPQALVLCPTRELAIQVSEAFQSYAANIPNFHVLPIYGGQDMRTQLRGLQRG 129 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 ++VGTPGRL DH+ + L++S L VVLDEADEML +GF +D+E IL +P ++ + Sbjct: 130 VQVIVGTPGRLLDHLDRRSLDLSELHTVVLDEADEMLRMGFNEDVEAILKKTPGNHQIAL 189 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ P I +A Y K+ V V I + + +I+ LV+ +++ A+ IL Sbjct: 190 FSATMPPPIRRVADTYLKNPVEVKIETSVTTNENIEQFYWLVSGTNKLEALTRILEVEDF 249 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F T+ S + L F L+G+++Q R ++ ++ G+ + IATDVA Sbjct: 250 EGMIIFVRTKNSTVDLAERLNARGFSAAPLNGDMNQALRERTIEQLKGGKLDMIIATDVA 309 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFR 361 ARG+D+ + V++ ++ + E +HR GRTGR GR G ++ FV P+ M R E+ R Sbjct: 310 ARGLDVERISHVLNFDIPYDDEAYVHRIGRTGRGGRTGKAILFVAPRERRMLRSIEKTTR 369 Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK--HD----PEK 415 + + PS + + R Q DSI + K ++A+ H+ PE Sbjct: 370 Q---KITEMQLPSRQDLIHRRTQEF--KAAVTDSINMENKSFFQRIIAEMCHEQEISPED 424 Query: 416 IAA--GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW----- 468 +AA +L L P+ P S R++ + + G N + Sbjct: 425 VAAALAYLLQKDRPLLPPKGKEP-SERPEREKREREFTPERSKKGELPNLGNAQSLRDYP 483 Query: 469 ------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD--- 519 F L VG R ++ + + I+ IG I++ D + V++ A D Sbjct: 484 EIVMERFRLDVGRNHNVSPREIVGAIANEADIDSCYIGQIKIFDDFSTVDLPAGMPDELF 543 Query: 520 -LLRRTVKLDKGIQLKYL 536 +L++T + + I LK L Sbjct: 544 QMLKKTRVMQRPINLKRL 561 >gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15] gi|143462316|sp|Q0UK12|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3 gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15] Length = 546 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 131/381 (34%), Positives = 201/381 (52%), Gaps = 13/381 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A GY T +Q + L KD++ A+TGSGKT AF L + LL + Sbjct: 128 DACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDK------P 181 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A L +APTRELA Q+ ++++ L + V A +GG+ + + L HI+V +P Sbjct: 182 QAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASP 241 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190 GRL DH+ KG ++ HLK +VLDEAD +LDL F D ++ I P+ R +FSAT+S Sbjct: 242 GRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHTYLFSATMS 301 Query: 191 PAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + +L + K+ VRV+I+S + Q S + +L+ +D ++++L + I+ Sbjct: 302 SKVESLQRAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKYKDLYLIHLLNDNIGHATIL 361 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T R +L FQ + L G+LSQ R AL + + +ATDVAARG+D Sbjct: 362 FTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDILVATDVAARGLD 421 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN----MQRRAERLFREANV 365 +P ++LV++ +L + E +HR GRT RAG+ G +V + Q QR L ++ Sbjct: 422 IPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQRIEHALGKQVPE 481 Query: 366 SVVWEPAPSVEAIRERDAQRI 386 V V A R +AQR+ Sbjct: 482 EKVSRDEVMVYAERVGEAQRV 502 >gi|91206663|sp|Q2UAK1|FAL1_ASPOR RecName: Full=ATP-dependent RNA helicase fal1 gi|83771282|dbj|BAE61414.1| unnamed protein product [Aspergillus oryzae] Length = 398 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 113/331 (34%), Positives = 183/331 (55%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T++ E+ Sbjct: 43 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQ-------- 94 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG ++ + R L G H+V GTPGR+ Sbjct: 95 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 153 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 154 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 213 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VRV + + I + V + + + + ++ A++FC+TR Sbjct: 214 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 273 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 274 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 333 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 334 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 364 >gi|115469764|ref|NP_001058481.1| Os06g0701100 [Oryza sativa Japonica Group] gi|97536398|sp|P35683|IF4A1_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1; AltName: Full=ATP-dependent RNA helicase eIF4A-1; AltName: Full=DEAD-box ATP-dependent RNA helicase 4 gi|53791892|dbj|BAD54014.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group] gi|53792733|dbj|BAD53769.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group] gi|113596521|dbj|BAF20395.1| Os06g0701100 [Oryza sativa Japonica Group] gi|125598400|gb|EAZ38180.1| hypothetical protein OsJ_22532 [Oryza sativa Japonica Group] gi|215712230|dbj|BAG94357.1| unnamed protein product [Oryza sativa Japonica Group] gi|215740601|dbj|BAG97257.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767366|dbj|BAG99594.1| unnamed protein product [Oryza sativa Japonica Group] Length = 414 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 190/355 (53%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D AL Sbjct: 60 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YAVVECQAL 113 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV + PA Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPA 408 >gi|67902058|ref|XP_681285.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4] gi|74656894|sp|Q5AUL4|FAL1_EMENI RecName: Full=ATP-dependent RNA helicase fal1 gi|40740448|gb|EAA59638.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4] gi|259480767|tpe|CBF73711.1| TPA: ATP-dependent RNA helicase fal1 (EC 3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5AUL4] [Aspergillus nidulans FGSC A4] Length = 399 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 114/331 (34%), Positives = 181/331 (54%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F L + T++ E Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG ++ + R L G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VRV + + I + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365 >gi|301510878|ref|ZP_07236115.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB058] Length = 344 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 191/338 (56%), Gaps = 8/338 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + RF P AL +APTRELA+Q+ + + L + + + +GGV ++++ L Sbjct: 69 PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 126 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT S + LA+ + + V V I E + ++D++ R +VA D+ + +IL Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L + ++V LSGE++Q +R L+ + G+ + I Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 ATDVA RGI + + V++ L ++ +HR GRTGR Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGR 344 >gi|73996624|ref|XP_863165.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 isoform 9 [Canis familiaris] Length = 811 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 117/369 (31%), Positives = 192/369 (52%), Gaps = 32/369 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P I E + + GY T +Q + L+ +D++ A+TGSGKT AF + L + E Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL-VKIEE 455 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +D+ P A+ +APTRELA Q+ E G+ IGG+S + L+ G Sbjct: 456 SDQ-----GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC 510 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177 IV+ TPGRL D + + L +S VVLDEAD M+D+GF D++ IL+ P Sbjct: 511 EIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDT 570 Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219 K R+ +MF+AT+ PA+ LA++Y + V I S + H + Sbjct: 571 DEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERV 630 Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 + + L++ S++ ++ IL I+F + + K L + + L G Sbjct: 631 EQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKG 690 Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 Q++R AL ++ G + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRAG Sbjct: 691 QEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG 750 Query: 340 RKGMSVFVI 348 + G+++ + Sbjct: 751 KSGVAITFL 759 >gi|300113218|ref|YP_003759793.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus watsonii C-113] gi|299539155|gb|ADJ27472.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii C-113] Length = 500 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/382 (33%), Positives = 202/382 (52%), Gaps = 13/382 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ + GY T +Q + L D++ AQTG+GKT AF + L E R Sbjct: 19 ILQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTLERL--ELSRRE 76 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P AL + PTRELA+QV + YA+ V GG S+ + R L+ GAH++ Sbjct: 77 PQ----ALVLVPTRELAIQVAEAFQS-YARHLEDFHVLPIYGGQSMGNQLRQLKRGAHVI 131 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGR+ DH+R K L ++ L V+LDEADEML +GF +D+E+IL P KR++ +FSAT Sbjct: 132 VGTPGRIMDHLRRKSLILTTLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQVALFSAT 191 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + ++ +A + + I + I+ R LV+ + +A+ +L I Sbjct: 192 MPTSVRNIASRHLHAPQDIKIKGKTASLPAINQRYWLVSGLHKLDALTRMLEAEEYDATI 251 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + K L + AL+G++ Q R + ++ + +ATDVAARG+ Sbjct: 252 IFVRTKIATEELAKKLTARGYAAAALNGDMPQSSREKVVDQLKKNTIDIIVATDVAARGL 311 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAERLFREANVSV 367 D+ + V++ ++ + +HR GRTGRAGR G ++FV P+ +RR + A Sbjct: 312 DVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPR--ERRMLSAIKRATGQP 369 Query: 368 VWE-PAPSVEAIRERDAQRILQ 388 ++E PS + + +R +R Q Sbjct: 370 LYEMQLPSHQQVIDRRIERFKQ 391 >gi|288924465|ref|ZP_06418438.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] gi|288344188|gb|EFC78744.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] Length = 459 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 110/336 (32%), Positives = 193/336 (57%), Gaps = 7/336 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E GY + +Q + L +DV+ AQTG+GKT AF L + S + + + Sbjct: 32 ALTELGYEVPSPIQVGTIPALLEGRDVVGLAQTGTGKTAAFALPILSRIDVRS------T 85 Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL +APTREL +QV + + G+ V GG + + ++ GA +VVGTP Sbjct: 86 STQALVLAPTRELVLQVAEAFGRYAHHLPGLHVLPVYGGQAYAPQLAGIRRGAQVVVGTP 145 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ DH+ L++ L+ +VLDEADEML +GF+++++ IL +P +++ +FSAT+ Sbjct: 146 GRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVALFSATMPAP 205 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +++ Y +D V + + + ++ R + VA + +A+ +L + I+F Sbjct: 206 IRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRVLEVEPFEAMIIFVR 265 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+++ + L F A++G+L Q +R + +RDG + +ATDVAARG+D+ Sbjct: 266 TKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLLVATDVAARGLDVER 325 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V++ ++ ++PE+ +HR GRTGRAGR G ++ ++ Sbjct: 326 VTHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLV 361 >gi|238502855|ref|XP_002382661.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus flavus NRRL3357] gi|317027125|ref|XP_001400167.2| ATP-dependent RNA helicase FAL1 [Aspergillus niger CBS 513.88] gi|317148165|ref|XP_001822547.2| ATP-dependent RNA helicase FAL1 [Aspergillus oryzae RIB40] gi|152032452|sp|A5AAE5|FAL1_ASPNC RecName: Full=ATP-dependent RNA helicase fal1 gi|220691471|gb|EED47819.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus flavus NRRL3357] Length = 399 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 113/331 (34%), Positives = 183/331 (55%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T++ E+ Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG ++ + R L G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VRV + + I + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365 >gi|119468940|ref|ZP_01611965.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales bacterium TW-7] gi|119447592|gb|EAW28859.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales bacterium TW-7] Length = 415 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/356 (33%), Positives = 198/356 (55%), Gaps = 6/356 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ ++ A+ + Y T++Q + P L DV+ SAQTG+GKT AF L L LL Sbjct: 10 NLDPLLLTAIEQNNYTTPTAIQIKTIPPILAGNDVMGSAQTGTGKTAAFVLPLLHKLLNT 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P A + + + PTRELA QV E + V A+ GG S+ + + L+ A Sbjct: 70 PKKDEPGIARVVI-LTPTRELAQQVFASFEKYAQGSNVQGALAYGGASIGPQIKALKT-A 127 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DHI + +S + ++V DEAD MLD+GF D+I+ IL P R+ L+F Sbjct: 128 QVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPGDRQTLLF 187 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIV-NILRYHG 243 SAT ++ L++ K+ + + + R + ++ ++ A+ DR +V +++ Sbjct: 188 SATFDDSVFGLSEKLLKNPELIEV--DKRNSAAVEVEQIIYAVDEDRKRELVSHMIGMKN 245 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F T+ + K + + + ++ G+ SQ R ALQ ++G RV +ATDV Sbjct: 246 WRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGTTRVLVATDV 305 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 AARG+D+P L+ VI+ EL E+ +HR GRTGRAG +G+++ ++ + Q E + Sbjct: 306 AARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQWLLEEI 361 >gi|70985190|ref|XP_748101.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus fumigatus Af293] gi|66845729|gb|EAL86063.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Aspergillus fumigatus Af293] Length = 505 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 114/331 (34%), Positives = 181/331 (54%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG---LALASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F L + T++ E Sbjct: 129 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQVIDTVVRETQ-------- 180 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG ++ + R L G H+V GTPGR+ Sbjct: 181 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 239 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 240 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 299 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VRV + + I + V + + + + ++ A++FC+TR Sbjct: 300 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 359 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 360 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 419 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 420 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 450 >gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii] gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii] Length = 494 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/347 (33%), Positives = 193/347 (55%), Gaps = 11/347 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I EA + T +Q + P L +D++ AQTGSGKT AF + + + L + Sbjct: 80 VPELI-EACKNLNFDKPTPIQARAIPPALEGRDIIGLAQTGSGKTAAFAIPILNRLWEDK 138 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + A +APTRELA Q + L A GV +GG+++ + R+L H Sbjct: 139 QPY------YACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMRKPH 192 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184 I++ TPGRL DH+ KG ++ L+ +V+DEAD +LD+ F ++ IL P + R + Sbjct: 193 IIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVIPTQDRTTYL 252 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-IVNILRYHG 243 FSAT++ I L + + V+ + S Q D + ++V S N ++ +L + Sbjct: 253 FSATMTSKIDKLQRASLTEPVKCAV-SNKYQTVDTLVQTLMVVPSGLKNTYLIYLLNENI 311 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 K I+F T+A+ R + + F AL G+L+Q +R+ AL + + GR + +ATDV Sbjct: 312 GKTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSILVATDV 371 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 AARG+D+P +++VI+ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 372 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 418 >gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 453 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQLHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|143455555|sp|Q0E3X4|RH35A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35A gi|51535964|dbj|BAD38045.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group] Length = 627 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 119/353 (33%), Positives = 183/353 (51%), Gaps = 9/353 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + L E+G V T +Q L L +D++ A TGSGKT+ F L L L E Sbjct: 189 LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 248 Query: 67 DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRER 118 P P + I P+RELA Q +E + +CIGGV + + Sbjct: 249 MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQL 308 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 ++ G HIVV TPGRL D + K +N+ + + + LDEAD ++DLGF DDI + D Sbjct: 309 DVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 368 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AK+ V VN+ + D+ V R ++ Sbjct: 369 QRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 428 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ +VFC +A V + L + VA+ G Q+ER NA++ ++G+ V Sbjct: 429 LQ-KTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVL 487 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +ATDVA++G+D PD++ VI+ ++ + EN +HR GRTGR G+ G++ I +N Sbjct: 488 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 540 >gi|120598331|ref|YP_962905.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. W3-18-1] gi|120558424|gb|ABM24351.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] Length = 427 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 183/338 (54%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E YV+ T VQ A + L +DVL A TGSGKT AF + L L+ + Sbjct: 24 LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVDAKTEDKTGAY 83 Query: 75 PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA QV L K +V A GGVSV+ + + L++GA ++V Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRSGADVLVA 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ + A+VLDEAD ML LGF +++ +LD+ P K++ L+FSAT Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L + + + SE Q S I R + V + + ++++ H A++F Sbjct: 202 EEVRELTAKLLNNPLEYQLQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 S + + + + L++ G+ +Q R+ L ++G V IATD+AARGID+ Sbjct: 260 VSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L +VI+ +L +P + +HR GR+GRAG G++V +I Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357 >gi|325115216|emb|CBZ50771.1| dead box polypeptide 27, related [Neospora caninum Liverpool] Length = 462 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 113/341 (33%), Positives = 194/341 (56%), Gaps = 11/341 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 ++S G+ T++Q +L L+ +D++ A+TGSGKT AFGL + LL RF Sbjct: 47 SVSTLGWRAPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQQLLQRTQRF---- 102 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTREL +Q+ +++ + GV V +GG+ + + L H+VVG+PG Sbjct: 103 --YALILAPTRELCLQISQQMLAMGGSLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPG 160 Query: 134 RLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATIS 190 R+ DH++ KG ++ +K +VLDEAD +L L F ++ +L+ SP +R+ ++FSAT++ Sbjct: 161 RVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMT 220 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 ++ L K K V++ + S+ S + +LV + + L + + IVF Sbjct: 221 TKVSKLQKASLKKPVKLEVNSKYDVASLLQQHFLLVPFKLKHTHLAAALLHLSPSSVIVF 280 Query: 251 CSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 +T A+ +R + HL FQ V L G+++Q +R AL R +AT+V +RG+D Sbjct: 281 TNTCAN-ARTIALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATEVGSRGLD 339 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +P +++VI+ ++ + + +HR GRT RAGR G ++ ++ Q Sbjct: 340 IPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQ 380 >gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti] gi|108879362|gb|EAT43587.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] Length = 638 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 112/327 (34%), Positives = 179/327 (54%), Gaps = 5/327 (1%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 Y T +Q+ + + ++D++ AQTGSGKT AF L + +TLL +N P + P + Sbjct: 235 YTKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPMINTLLNDNADMVPGN-PFVVI 293 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 IAPTRELA+Q+ E T + V V GG + + ++QNG HI+V TPGRL D + Sbjct: 294 IAPTRELALQIFNEARKFALGTVLKVCVAYGGTATRHQMDNIQNGCHILVATPGRLLDFV 353 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKK-RRMLMFSATISPAITT 195 + + +K VVLDEAD MLD+GF +E +++ PK+ R+ LMFSAT I Sbjct: 354 DKQAVTFERVKFVVLDEADRMLDMGFMPSVEKMMNHETMRPKEERQTLMFSATFPAEIQE 413 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 LA + + + V + +D++ V+ + + +L +VF T+ Sbjct: 414 LAGQFLNNYIFVAVGIVGGASTDVEQTIHQVSKFQKRKKLEELLEADDPTGTLVFVETKR 473 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 + +L+E F ++ G+ Q+ER AL+ + G+ + IAT VAARG+D+ ++ Sbjct: 474 NADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGKMFILIATSVAARGLDIKNVAH 533 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKG 342 V++ +L + ++ +HR GRTGR G KG Sbjct: 534 VVNYDLPKSIDDYVHRIGRTGRVGNKG 560 >gi|321253117|ref|XP_003192635.1| hypothetical protein CGB_C1160C [Cryptococcus gattii WM276] gi|317459104|gb|ADV20848.1| hypothetical protein CNBC0850 [Cryptococcus gattii WM276] Length = 396 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 113/325 (34%), Positives = 184/325 (56%), Gaps = 11/325 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 +++Q+ + P +R +DV+ AQ+G+GKT F +++ ++ N R + A L ++PT Sbjct: 47 SAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSI-DTNLRETQA-----LVLSPT 100 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELAVQ+ + L V CIGG SV + R L+ G +V GTPGR+ D IR + Sbjct: 101 RELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRN 160 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L +K ++LDE+DE+L+ GF+D I I P ++++ SAT+ + + + D Sbjct: 161 LRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVVVVSATLPHDVLEMTTKFMTD 220 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260 VR+ + + I + VA+ D + + ++ A++FC+TR V Sbjct: 221 PVRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 278 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T+ + E F V ++ GE+ Q+ER + R G++RV I TDV ARGID+ + LVI+ + Sbjct: 279 TEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYD 338 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345 L ++ EN LHR GR+GR GRKG+++ Sbjct: 339 LPTSRENYLHRIGRSGRFGRKGVAI 363 >gi|260887674|ref|ZP_05898937.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185] gi|260862554|gb|EEX77054.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185] Length = 436 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 112/337 (33%), Positives = 190/337 (56%), Gaps = 8/337 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 +AL+ +G T VQE + P +R +D +V AQTG+GKT+AF L L + Sbjct: 4 DALARQGIREATLVQEQAI-PAVRSGRDAIVQAQTGTGKTLAFLLPLLERIKGN------ 56 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 A AL ++PTRELA+Q R + L G+ A+ GG + R++ L+ +++ T Sbjct: 57 ARVAQALVVSPTRELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLRQKPQLIIAT 116 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL DH+R + +S + +VLDEADE++ LGF +D+E +L++ ++++FSAT+ Sbjct: 117 PGRLLDHLRRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQLMLFSATMPE 176 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L + Y K+ + + E ++I+ V + + + +L + A+VFC Sbjct: 177 RIRALTRRYMKEPREITVQPECVTLANIEQVIVDTREDTKLDKLCELLNKYQPYLAMVFC 236 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ V+ T LA + V L G+L+Q +R+ ++ R+ + ++ + TD+AARG+D+ Sbjct: 237 HTKQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILVVTDIAARGLDIE 296 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V + +L + E +HR GRTGRAG KG++V + Sbjct: 297 GVTHVFNYDLPQDTEWYIHRIGRTGRAGAKGLAVTFV 333 >gi|118579192|ref|YP_900442.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501902|gb|ABK98384.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM 2379] Length = 447 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 181/339 (53%), Gaps = 7/339 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 FE P I +S GY T +Q+ + P + DV+ AQTG+GKT AF L + L+ Sbjct: 6 FEFHP-TIAAGISAAGYSTPTPIQKQSIPPVMAGSDVMGLAQTGTGKTAAFALPILHRLM 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 AL IAPTRELA Q+ + L AKTG+ GGVSV+ + L+ Sbjct: 65 EGKQ-----GTVRALIIAPTRELAEQINTSIAQLGAKTGLKSMTVYGGVSVNPQIERLRR 119 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV PGRL DHI +++S ++ +VLDEAD+M D+GF DI +L P +R+ L Sbjct: 120 GVDIVVACPGRLLDHINQGTIDLSRIEVLVLDEADQMFDMGFLPDIRRVLKHLPAQRQTL 179 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ I LA + + + V A + + V+ + ++ +LR+ Sbjct: 180 LFSATMPDDIRRLASDILRQPITVQ-AGSTAPPVTVSHALYPVSQHLKTPLLLELLRHTD 238 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++ ++F T+ R + L + ++ +L G LSQ R AL RDG ++ +ATD+ Sbjct: 239 TESVLIFARTKHRAKRLGEQLEKAGYRATSLQGNLSQNRRQAALDGFRDGTFQIMVATDI 298 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 AARGID+ + V++ ++ E +HR GRTGRA R G Sbjct: 299 AARGIDVSQISHVVNYDIPDTAEAYIHRIGRTGRAARSG 337 >gi|171061032|ref|YP_001793381.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix cholodnii SP-6] gi|170778477|gb|ACB36616.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6] Length = 417 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 132/348 (37%), Positives = 188/348 (54%), Gaps = 12/348 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---L 63 +P ++ A + G + T +Q + LR DVL +A+TGSGKT AF L L L L Sbjct: 9 LPALVSAAQAH-GLLRPTPIQAEAIPAILRGVDVLGAARTGSGKTAAFALPLLQRLQPCL 67 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121 E R + A L + PTRELA+QVG LE L + + + GGVS++ + L Sbjct: 68 GEWRRRTQA-----LVLVPTRELALQVGEVLEDLSSHLVEPPRIVIAFGGVSINPQMMAL 122 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 + GA +VV TPGRL D + L I L +VLDEAD +LDLGF D++ I P +R Sbjct: 123 RGGAEVVVATPGRLLDLLGHNALRIDTLNTLVLDEADRLLDLGFADELARIRAQLPPRRF 182 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L FSAT + LA + + VR+ + ++ + DI RA+ V + R + +L Sbjct: 183 QHLFFSATFPEEVQALADEWLHEPVRIELQADAAETPDITQRAIEVDATRRTPLLRKLLA 242 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G + A+VF +TR + L + AL GELSQ R+ AL R +V +A Sbjct: 243 EPGWEQALVFVATRYATELLAHKLHRSGIKAAALHGELSQGARNAALAAFRQRELQVLVA 302 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 TDVAARGID+ L +V++ +L + ++ HR GRTGRAG G +V I Sbjct: 303 TDVAARGIDIARLPVVVNFDLPRSTDDYTHRIGRTGRAGEVGQAVSFI 350 >gi|29829640|ref|NP_824274.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680] gi|29606748|dbj|BAC70809.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680] Length = 759 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 117/320 (36%), Positives = 176/320 (55%), Gaps = 10/320 (3%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVG 91 DV+ A+TG+GKT+ FGL L + D R P AP AL + PTREL QV Sbjct: 11 DVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRARPEQLTDAPQALVVVPTRELCTQVT 70 Query: 92 RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151 +L V V GG + + L+ G ++VGTPGRL D K L++ H+KA Sbjct: 71 NDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQKKLDLKHIKA 130 Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 +VLDEADEMLDLGF D+E I++ P +R+ ++FSAT+ A+ LA+ Y + + Sbjct: 131 LVLDEADEMLDLGFLPDVEKIINMLPARRQTMLFSATMPGAVIGLARRYMSQPTHIRATA 190 Query: 212 ENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268 + + + + A + + D+ + IL+ G A+VFC T+ + + L + Sbjct: 191 PDDEGATVRNTAQFIYRAHNMDKPEMVSRILQADGRGLAMVFCRTKRTAADLADQLQQRG 250 Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328 F A+ G+L Q R AL+ R+G+ V + TDVAARGID+ + VI+ + + + Sbjct: 251 FASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTY 310 Query: 329 LHRSGRTGRAGRKGMSVFVI 348 LHR GRTGRAG KG+++ ++ Sbjct: 311 LHRIGRTGRAGAKGIAITLV 330 >gi|257455420|ref|ZP_05620655.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60] gi|257447382|gb|EEV22390.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60] Length = 391 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 189/363 (52%), Gaps = 15/363 (4%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 + F +P + +A+ + GY LT +Q IL L +D + AQTG+GKT F L + Sbjct: 2 FQTFSQLPLHPALKQAIDQLGYQTLTPIQAQILPNTLAGQDAIGQAQTGTGKTATFLLTI 61 Query: 59 ASTLL-------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111 + LL + DRF + AL +APTRELA Q+ ++ L T + +GG Sbjct: 62 INELLNNPLNPEIDGDRFLGETR--ALVLAPTRELAQQIYQDCLELTKFTELHTVCLLGG 119 Query: 112 VSVHRERRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170 + + L Q I++ TPGRL D + + L+ +VLDEAD MLD+GF DI+ Sbjct: 120 TDYETQSKQLHQKFVDIIIATPGRLIDFCFQHHVYLDRLEILVLDEADRMLDMGFIPDIK 179 Query: 171 FILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 ++ P R+ L+FSAT + + LA + + V IA E + I+ + Sbjct: 180 RLIRMMPANTHRQTLLFSATFNQDVMNLAYRWLYQPIFVEIAPEQKTSQTIEQLFFTLME 239 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 SD+ A+ I+ K IVF + + V R L ++VV LSG++ Q +R L Sbjct: 240 SDKLAALQQIIEKISPKKMIVFANRKDQVKRLYDKLNRQ-YKVVILSGDVIQAKREKYLA 298 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 R G A + +ATDVA RGI + D+ V++ L +P++ +HR GRTGRAG KGMS+ I Sbjct: 299 QFRQGDANILVATDVAGRGIHVDDVACVVNYTLPDSPDDYVHRIGRTGRAGNKGMSISFI 358 Query: 349 PQN 351 +N Sbjct: 359 SEN 361 >gi|119499061|ref|XP_001266288.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Neosartorya fischeri NRRL 181] gi|142985577|sp|A1D071|FAL1_NEOFI RecName: Full=ATP-dependent RNA helicase fal1 gi|119414452|gb|EAW24391.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Neosartorya fischeri NRRL 181] Length = 399 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 113/331 (34%), Positives = 182/331 (54%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T++ E Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG ++ + R L G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VRV + + I + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365 >gi|326915068|ref|XP_003203843.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Meleagris gallopavo] Length = 369 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 15 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 68 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 69 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 128 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 129 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 188 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 189 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 248 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 249 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 308 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 309 NYDLPNNRELYIHRIGRSGRYGRKGVAI 336 >gi|323492253|ref|ZP_08097411.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG 20546] gi|323313566|gb|EGA66672.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG 20546] Length = 427 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 187/341 (54%), Gaps = 1/341 (0%) Query: 5 ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64 +N I +AL+E GY LT VQ+ + R D+L +AQTG+GKT AF L + +L Sbjct: 6 QNFSPEIVKALTECGYEKLTPVQQKAIPLARRGHDILANAQTGTGKTAAFALPIVQNIL- 64 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 ++D+ + A+ + PTRELA QV ++ T + GG + +++ L+ G Sbjct: 65 DSDKSANRHQTRAVILTPTRELAEQVASNIQDYTKYTDIKTVAIFGGKKMATQQKALEAG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 ++V TPGRL +HI +++++L+ +V DEAD MLD+GF IE I+ K + ++ Sbjct: 125 VDVLVATPGRLIEHIELNNVSLANLEFLVFDEADRMLDMGFIASIEKIMSGVTTKPQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT S + LA + RV++A EN I + V + + ++ Sbjct: 185 FSATFSTQMNKLASEILRQPKRVSVARENVTADTIAHVVYPVEQERKRELLSELIGRKNW 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K +VF + + + + K L + V G+ +Q R AL+ + G+ARV IATDVA Sbjct: 245 KQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALEEFKTGKARVMIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+D+ +L V++ ++ E+ +HR GRTGRAG++G +V Sbjct: 305 ARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAV 345 >gi|126667283|ref|ZP_01738256.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17] gi|126628228|gb|EAZ98852.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17] Length = 463 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 129/391 (32%), Positives = 205/391 (52%), Gaps = 17/391 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 N+ + +A++ G+ T +Q L L +D++ AQTG+GKT AF + T+L Sbjct: 48 NLDHRLQQAIAAIGFEYCTPIQAETLPWTLACQDLIGQAQTGTGKTAAFLITAIQTMLET 107 Query: 65 ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 ++ RF AS P LA+APTRELA+Q+ ++ E L A TG V +GG+ ++R L Sbjct: 108 PIEDSKRF--ASEPRVLALAPTRELAMQIAKDAEQLCAHTGHKVVTVVGGMHYDKQRDQL 165 Query: 122 QNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKK 179 QN I+V TPGRL D + + + + + ++LDEAD MLD+GF D++ I+ +PK+ Sbjct: 166 QNEVVDILVATPGRLIDFLGSQDVFLDQIDILILDEADRMLDMGFIPDVKRIIRKCTPKE 225 Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 R+ L+FSAT + + LA + + A V I E + ++ LV ++ +VN Sbjct: 226 DRQTLLFSATFNQDVLNLASMWTQSAEFVEIEPEQKTAERVEQTVYLVGDDEKLRVLVNY 285 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ A+VF + R + L V +SGE++Q +R L+ + G +V Sbjct: 286 LKRPEVDKALVFANRRDQCRDLEEDLRNQGVSVSLMSGEIAQAKRLKTLEQFKAGSIQVL 345 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350 +ATDVA RGI + + V + L N E+ +HR GRTGRAG G+S+ F +P Sbjct: 346 VATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGSTGVSISFAGEDDSFALPA 405 Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRER 381 + ++L E + P + R+R Sbjct: 406 IEKYIGQKLANEVPDEALMVPMDNAPIARKR 436 >gi|134297916|ref|YP_001111412.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum reducens MI-1] gi|134050616|gb|ABO48587.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens MI-1] Length = 460 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 112/342 (32%), Positives = 185/342 (54%), Gaps = 7/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + E L G T +Q+ + L KDV+ AQTG+GKT+AF L + + A+ Sbjct: 13 LNELLRVYGITEPTPIQKQTIPILLSGKDVIAQAQTGTGKTLAFVLPILEKIDAKKSYIQ 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA+Q+ E++ L +K V GG V R+ + LQ HIV+ Sbjct: 73 ------ALILTPTRELALQITTEVKKLASKMDANVLAVYGGQDVERQNKRLQGNTHIVIA 126 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH+ + ++ + +VLDEAD+ML +GF +++E I+ + KR+ ++FSAT+ Sbjct: 127 TPGRLLDHLGRGTIRLTGVSMLVLDEADQMLHMGFLNEVEKIIHQTSAKRQTMLFSATMP 186 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I L+ Y + + +++ AV + + +L + I+F Sbjct: 187 AEIRALSVKYMRKPMDIHVRGTGITLEKTKQIAVETTDRTKQETLRKLLDEYQPYLGIIF 246 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ S ++L H + L G+LSQ +R ++ R+ + ++ +ATDVAARG+D+ Sbjct: 247 CRTKRRASALNEMLLAHGYNSDELHGDLSQAKREQVMKRFREAKLQILVATDVAARGLDV 306 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 + V + ++ + E+ +HR GRTGRAG G++V FV P++ Sbjct: 307 EGVTHVFNYDIPQDVESYIHRIGRTGRAGDTGLAVTFVSPRD 348 >gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863] gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v] Length = 454 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa] gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa] Length = 807 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 196/366 (53%), Gaps = 10/366 (2%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 +K FE+ PQ++ A++++GY T +Q L L D++ A+TGSGKT AF L Sbjct: 224 IKTFEDCGFSPQLM-NAIAKQGYEKPTPIQCQALPIVLSGSDIIGMAKTGSGKTAAFVLP 282 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 + ++ + P+ + APTRELA Q+ E + G+ V+ GG+S + Sbjct: 283 MIVHIM-DQPELEKEEGPIGVVCAPTRELAHQIYLETKKFSKSHGIRVSAVYGGMSKLDQ 341 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 ++L+ G IV+ TPGRL D ++ K LN+S +VLDEAD M DLGF I I+ Sbjct: 342 FKELKAGCEIVIATPGRLIDMLKMKALNMSRATYLVLDEADRMFDLGFEPQIRSIVGQIR 401 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ L+FSAT+ I LA+ D VRV + R + DI + V V SD + Sbjct: 402 PDRQTLLFSATMPRKIEKLAREILTDPVRVTVGEVGRANEDI-TQVVQVIPSDAEKLPWL 460 Query: 238 ILRYHG---AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 I + G + +VF S +A+V LA+ F+V AL G+ Q R LQ + G Sbjct: 461 IEKLPGMIDEGDVLVFASKKATVDDIESQLAQKAFKVAALHGDKDQASRMEILQKFKSGV 520 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQ 353 V +ATDVAARG+D+ ++ V++ +++ + +HR GRTGRAG K G++ +I Q Sbjct: 521 YHVLVATDVAARGLDIKSIKSVVNFDIAREMDVHVHRIGRTGRAGDKDGIAYTLITQKEA 580 Query: 354 RRAERL 359 R A L Sbjct: 581 RFAGEL 586 >gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2 [Acyrthosiphon pisum] Length = 516 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 117/367 (31%), Positives = 196/367 (53%), Gaps = 10/367 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N P + + G+ T +Q + K+++ AQTGSGKT+ + L A + Sbjct: 108 NFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLP-AVVHINN 166 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 + P+AL +APTRELA Q+ +++ L+ ++ + + CI GG + RDL NG Sbjct: 167 QEPLKKGDGPIALVLAPTRELAQQI-QKVAGLFNQSTYLRSTCIYGGAPKSHQARDLMNG 225 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IV+ TPGRL D + + N+ +VLDEAD MLD+GF I I+ R++LM Sbjct: 226 VEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLM 285 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR--- 240 +SAT + LA ++ D +++N+ S + +I + ++++ ++++L+ Sbjct: 286 WSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQDIA 345 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ V T+ + + V + G+ SQ ER + L+ R GRA + +A Sbjct: 346 NMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANILVA 405 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359 TDVAARG+D+ D++ VI+ + +N E+ +HR GRTGR+ +KG S + ++A+ L Sbjct: 406 TDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFFTHSNSKQAKDLV 465 Query: 360 --FREAN 364 EAN Sbjct: 466 AVLTEAN 472 >gi|114046940|ref|YP_737490.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-7] gi|113888382|gb|ABI42433.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 427 Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/377 (32%), Positives = 194/377 (51%), Gaps = 4/377 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E Y T +Q A + L +DVL A TGSGKT AF + L L A Sbjct: 24 LTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAEKSAGQ 83 Query: 75 PLALAIAPTRELAVQVGRE-LEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV L + G + + GGVSV+ + + L+ GA ++V TP Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATP 143 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + L ++ + A+VLDEAD ML LGF D++ +L++ P K++ L++SAT Sbjct: 144 GRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPAKKQTLLYSATFPEE 203 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L + ++ SE Q S I+ R + V + + ++++ H A++F S Sbjct: 204 VRALTAKLLHQPLEYHLQSE--QESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVS 261 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + + + + L++ G+ +Q R+ L + G V IATD+AARGID+ Sbjct: 262 AKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGEISVLIATDIAARGIDIDK 321 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L +VI+ +L +P + +HR GR+GRAG G++V +I + ++ + +V E Sbjct: 322 LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLVREQI 381 Query: 373 PSVEAIRERDAQRILQD 389 P EA E + + Q+ Sbjct: 382 PGFEANAEMPLEVLAQE 398 >gi|297834230|ref|XP_002884997.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330837|gb|EFH61256.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 412 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D FS AL Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLVQCQ-AL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + + +R + + NV V E PS Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTHDDERMLFDIQKFYNVVV--EELPS 406 >gi|325676737|ref|ZP_08156410.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707] gi|325552285|gb|EGD21974.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707] Length = 712 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 128/390 (32%), Positives = 200/390 (51%), Gaps = 19/390 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + AL+ R + + S +A+ PD + K++L AQTGSGKT+AFGL + + L Sbjct: 53 LPEPVVAALA-RNSITVPSPIQAMAIPDAIAGKNILGRAQTGSGKTLAFGLPMLARLARH 111 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 DR +P P AL + PTRELA QV L G+ V +GG ++ L+ G Sbjct: 112 EDRPAPKR-PRALVLVPTRELAFQVVDSLTPYAGSLGLNVRAAVGGTPFTKQVDQLRRGV 170 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+R + ++ LDEAD+M D+GF ++ +L +P + L+F Sbjct: 171 DILVATPGRLGDHLRQNTCVLGEIEMTALDEADQMADMGFLPEVRTLLADTPNDSQRLLF 230 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + TL + + + + + +D+ +LV D+D + I G + Sbjct: 231 SATLDNDVKTLVREFLPEHELHSTQDGRASVTTMDHYVLLVDRGDKDAVLAEIASREGGR 290 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ T+ L E AL G +Q +R+ L+ + GR V +ATDVAA Sbjct: 291 -TIMFARTKLGAEGITERLREKGVAAEALHGGKAQNQRTRVLERFKTGRTPVLVATDVAA 349 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + ++LV+H + + ++ LHR+GRT RAG G+ ++ N +R RL A V Sbjct: 350 RGIHVDGIDLVVHVDPPQDHKDYLHRAGRTARAGEAGVVAAIVLPNQRRMFRRLTGMAGV 409 Query: 366 SVVWEP---------------APSVEAIRE 380 + P APS E +R+ Sbjct: 410 NATAVPVFPGSEELATITGAQAPSGEPVRD 439 >gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] Length = 681 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 135/431 (31%), Positives = 230/431 (53%), Gaps = 34/431 (7%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q + + KD++ A+TG GKT+AF L + LL + + A Sbjct: 121 LQARGIHTLFPIQAMTFDKIVDGKDLMGRARTGMGKTLAFALPVIELLLQDKRPRARGRA 180 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCI-GGVSVHRERRDLQNGAHIVVGTP 132 P + +APTRELA QV E E TG ++ VCI GG S + ++G I+VGT Sbjct: 181 PRVVCMAPTRELAKQVATEFEL----TGPSLSTVCIYGGASYQSQNNAFRSGVDILVGTT 236 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-------DSSPKKRRMLMF 185 GR+ DHI L + + + ++LDEAD ML++GFR+D++ + + S KR+ L+F Sbjct: 237 GRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFTAMDQVKNESTGKRQTLLF 296 Query: 186 SATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 SATI + +A Y K A VN+ S+++ +D+ + A+ R + N+L + Sbjct: 297 SATIPKWVKDVADKYMKKAEYVNLVKDSDDQASTDVQHIAIPCHWQGRPTLLANLLGVYA 356 Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 K++ I+F T+ + V E L G+++Q++R ++ R+GR R+ IAT Sbjct: 357 KKDSRTIIFAETKKDCNELA-VHPEIKTDCQVLHGDIAQEQRETTMKAFREGRLRLLIAT 415 Query: 302 DVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 DVAARG+D+ +++LVI++E ++ + +HRSGRTGRAG+KG+ + + + + Sbjct: 416 DVAARGLDM-NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLYTNRQRDQ 474 Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQ-----DPLFLDSIQGDEKKMVDVLLAK 410 ++ R+ + + P E + + A + L+ DP ++ Q +++++ + Sbjct: 475 LNQIERKIGNKFIMKGPPDQEDLIKASAAKALKEIDNVDPSMIEIFQEKARELLETM--- 531 Query: 411 HDPEKIAAGFL 421 +PEK A L Sbjct: 532 -EPEKCLAAAL 541 >gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2] gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2] Length = 448 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 198/377 (52%), Gaps = 9/377 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ N Sbjct: 10 PEIL-RAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT-NQ 67 Query: 68 RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P+ AL + PTRELA Q+G + + V GGVS++ + L+ G Sbjct: 68 PHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FS Sbjct: 128 VLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPTKRQNLLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I +LA+ + + + +A N + V + + ++ + Sbjct: 188 ATFSDDIKSLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AAR Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREA 363 G+D+ +L V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 Query: 364 NVSVV---WEPAPSVEA 377 + +EP PS++A Sbjct: 368 IPRIATPGYEPDPSIKA 384 >gi|156405006|ref|XP_001640523.1| predicted protein [Nematostella vectensis] gi|156227658|gb|EDO48460.1| predicted protein [Nematostella vectensis] Length = 407 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P L+ +DV+ AQ+G+GKT F +++ + + P AL Sbjct: 53 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ------LREPQAL 106 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + + L V CIGG ++ + R L G HIV GTPGR+ D Sbjct: 107 VLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGRVFDM 166 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 167 IRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTS 226 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 227 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 286 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER ++ R G++RV I+TDV ARG+D+ + LVI Sbjct: 287 DWLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVLISTDVWARGLDVQQVSLVI 346 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 347 NYDLPNNRELYIHRIGRSGRFGRKGVAI 374 >gi|114794876|pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution gi|114794877|pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution gi|116668327|pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2 A Resolution Length = 410 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 56 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 109 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 110 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 169 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 170 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 229 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 230 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 289 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 290 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 350 NYDLPNNRELYIHRIGRSGRYGRKGVAI 377 >gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta] Length = 1201 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/377 (33%), Positives = 200/377 (53%), Gaps = 12/377 (3%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 ++ FE N P + E + GY+ T +Q L +D++ AQTGSGKT+ + L Sbjct: 111 IQYFEEGNFPPYVMENIHREGYLRPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILP- 169 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117 A + R S P+ L +APTRELA Q+ +E+ + + V CI GG + Sbjct: 170 AIVHIIHQPRISSGDGPIVLILAPTRELAQQI-QEVANSFGEMAAVRNTCIFGGAPKGPQ 228 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 DL+ G I + TPGRL D + N+ +VLDEAD MLD+GF I I++ Sbjct: 229 AHDLEKGIEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 288 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236 R++LM+SAT + LA+++ D + +NI S + +I + ++D + Sbjct: 289 PDRQVLMWSATWPKEVRALAEDFLTDYIHLNIGSLTLSANHNITQIIDVCQEYEKDLKLY 348 Query: 237 NILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 +L+ G + I+F T+ V TK + +Q V++ G+ +QQER + LQ R+G Sbjct: 349 RLLQEIGTEKENKTIIFVETKRKVDDITKNIRREGWQAVSIHGDKNQQERDHVLQEFRNG 408 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352 +A + +ATDVAARG+D+ D++ VI+ + S+ E+ +HR GRTGR + G + F NM Sbjct: 409 KAPILVATDVAARGLDVDDVKYVINFDFPSSSEDYIHRIGRTGRKRQTGTAYAFFTTHNM 468 Query: 353 QRRAE--RLFREANVSV 367 + + + REA +V Sbjct: 469 KHAGDLIEVLREAGQNV 485 Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/354 (32%), Positives = 188/354 (53%), Gaps = 8/354 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P + + +G+ T++Q L +D++ AQTGSGKT+A+ L A + Sbjct: 712 FPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP-AIVHINHQ 770 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 R S P+AL +APTRELA Q+ +++ + + V CI GG + RDL+ G Sbjct: 771 PRLSRNDGPIALILAPTRELAQQI-QQVASDFGMSSQVRNTCIFGGAPKGPQARDLERGV 829 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I + TPGRL D + N+ +VLDEAD MLD+GF I I++ R+ LM+ Sbjct: 830 EICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMW 889 Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241 SAT + LA+ + D +++NI S + + +I + ++++ ++ +L Sbjct: 890 SATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLEEISN 949 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 I+F T+ V T+ + + +Q + + G+ SQQER L R+ R+ + +AT Sbjct: 950 EPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAILVAT 1009 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354 DVAARG+D+ D++ VI+ + SN E+ +HR GRTGR+ R G + F P N + Sbjct: 1010 DVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHK 1063 >gi|148974049|ref|ZP_01811582.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales bacterium SWAT-3] gi|145965746|gb|EDK30994.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales bacterium SWAT-3] Length = 443 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 200/361 (55%), Gaps = 9/361 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + T +Q + + KD+L S++TGSGKT+AF L + L + FS A Sbjct: 16 LKHYDFKKATEIQSKAIPVAMAGKDLLASSKTGSGKTLAFVLPMIHKAL-KTKAFS-ARD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P + +APTRELA QV EL + A+ +GG + + + + L+ +V TPGR Sbjct: 74 PRGVILAPTRELAKQVYGELRSMLGGLSYEAALILGGENFNDQVKALRKYPRFIVATPGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPAI 193 L DH+ + L + ++ ++LDEAD MLDLGF ++ I +++ +RR LMFSAT+ A Sbjct: 134 LADHLEHRSLFLDSVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAE 193 Query: 194 TTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251 N DA R+++ N QH DI + L D AI++ +L + ++F Sbjct: 194 VNDIANEMLDAPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVLEEAEYRQVMIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TRA R T L E + VALSG L+Q +R+ + ++ + TDVA+RGID+P Sbjct: 254 ATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDVASRGIDIP 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ--RRAE-RLFREANVSV 367 ++ VI+ ++ + E +HR GRTGRAG KG ++ ++ P++ + +R E L ++ N SV Sbjct: 314 NVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWESFKRVELYLQQDLNFSV 373 Query: 368 V 368 + Sbjct: 374 L 374 >gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S] gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] Length = 545 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 128/346 (36%), Positives = 183/346 (52%), Gaps = 8/346 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+E G ++QE L L D++ A+TG GKT FG+ L + + + Sbjct: 52 IVKALAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGIPLLHRVSTADSGTT 111 Query: 71 PASA-PLALAIAPTRELAVQVGRELEWL--YAKTG---VVVAVCIGGVSVHRERRDLQNG 124 P P AL I PTREL VQV ++LE Y K+G + V GG ++ L+ G Sbjct: 112 PLDGTPRALVIVPTRELCVQVTQDLENASKYLKSGEKKLEVLSIYGGRPYEQQIDALRKG 171 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 +VVGTPGRL D L + + +VLDEADEMLDLGF DIE IL P KR+ ++ Sbjct: 172 VDVVVGTPGRLLDLANQGHLILGKVGVLVLDEADEMLDLGFLPDIERILGMVPDKRQTML 231 Query: 185 FSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 FSAT+ I TLA+ + Q +R A + H D+ + +L+ Sbjct: 232 FSATMPGPIITLARTFLTQPTHIRAEEADSSAVHERTTQHIYRAHALDKAEMVARVLQAD 291 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G ++F T+ + + L E F V A+ G+L Q R AL R G+ V +ATD Sbjct: 292 GRGATMIFTRTKRTAQKVADDLNERGFNVGAVHGDLGQIAREKALAGFRSGKVDVLVATD 351 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ D+ VI+ + + + +HR GRTGRAGR G+++ ++ Sbjct: 352 VAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAITLV 397 >gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685] gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685] Length = 448 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 185/345 (53%), Gaps = 8/345 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL ++GY T++Q A + P + +DVL SA TG+GKT AF L LL + S Sbjct: 17 DALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA+QV + L T + + GGVS +VV TP Sbjct: 75 GPPRILILTPTRELAMQVADQARELARHTTLDITTITGGVSYINHAEIFSTNQDMVVATP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SP 191 GRL +I+ + + ++ ++LDEAD MLD+GF DIE + + +++ L+FSAT+ S Sbjct: 135 GRLLQYIKEENFDCRSVETLILDEADRMLDMGFAKDIETVAAETRWRKQTLLFSATLESD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248 A+ A +D V V+ R+ I YRA +L + + ++LR ++ Sbjct: 195 AVHDFADRLLEDPVDVSAEPPRRERKKIQQWYYRAD--SLKHKTALLCHLLRQPDVTKSV 252 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F R V L + Q L GEL Q +R+ A++ M DGR V +ATDVAARG+ Sbjct: 253 IFVRKRERVHELVTWLHQAGIQACFLEGELVQAKRNEAIKRMLDGRVNVLVATDVAARGL 312 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 D+PD+ V + ++ + + LHR GRT RAGRKG ++ +I + Q Sbjct: 313 DIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQ 357 >gi|58265474|ref|XP_569893.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134108955|ref|XP_776592.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var. neoformans B-3501A] gi|74686072|sp|Q5KJJ2|FAL1_CRYNE RecName: Full=ATP-dependent RNA helicase FAL1 gi|50259272|gb|EAL21945.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var. neoformans B-3501A] gi|57226125|gb|AAW42586.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 396 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 113/325 (34%), Positives = 184/325 (56%), Gaps = 11/325 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 +++Q+ + P +R +DV+ AQ+G+GKT F +++ ++ N R + A L ++PT Sbjct: 47 SAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSI-DTNLRETQA-----LVLSPT 100 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELAVQ+ + L V CIGG SV + R L+ G +V GTPGR+ D IR + Sbjct: 101 RELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRN 160 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L +K ++LDE+DE+L+ GF+D I I P ++++ SAT+ + + + D Sbjct: 161 LRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVVVVSATLPHDVLEMTTKFMTD 220 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260 VR+ + + I + VA+ D + + ++ A++FC+TR V Sbjct: 221 PVRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 278 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T+ + E F V ++ GE+ Q+ER + R G++RV I TDV ARGID+ + LVI+ + Sbjct: 279 TEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYD 338 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345 L ++ EN LHR GR+GR GRKG+++ Sbjct: 339 LPTSRENYLHRIGRSGRFGRKGVAI 363 >gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82] Length = 441 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 191/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT+S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATLSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|254230204|ref|ZP_04923597.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25] gi|262392870|ref|YP_003284724.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25] gi|151937289|gb|EDN56154.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25] gi|262336464|gb|ACY50259.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25] Length = 439 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 187/342 (54%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65 PQVI E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL E Sbjct: 18 PQVI-EGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P + P A+ +APTRELA+Q+ + E L TG+ A+ GG S ++ LQ+G Sbjct: 77 HEGRKP-TQPRAIIMAPTRELAIQIYNDAEALTESTGLKTALAYGGESYDKQLNKLQDGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 I++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S + LA + V + E + I + D+ + ++ Sbjct: 196 LFSATLSYRVQELAFEHMNTPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+F +T+ LA +V L+G++ Q++R L+ G + +ATDV Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|67477952|ref|XP_654408.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS] gi|56471449|gb|EAL49018.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS] Length = 432 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 110/351 (31%), Positives = 203/351 (57%), Gaps = 13/351 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP+V+ + + GY T +QE + L++KD++ AQTGSGKT +F L + LL Sbjct: 17 IPEVL-KVVEYLGYKKPTRIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMVQHLLNVK 75 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ + I PTRELA QV ++ + A G+ + +GG+ V ++ L Sbjct: 76 EK---NRGFYCIIIEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDVMKQSVQLAKRP 132 Query: 126 HIVVGTPGRLCDHIRG-KGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 ++VGTPGR+ HI+ KG+ +I +K +V+DEAD++L++ F ++I+++++ PK+R Sbjct: 133 QVIVGTPGRIVYHIKNTKGVEESIEKVKFLVIDEADKLLEMDFANEIDYLIEKLPKQRTT 192 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNIL 239 ++FSAT+S + L + V+ I E +++ +D + RD +++IL Sbjct: 193 MLFSATMSTKVEKLQRASLTHPVK--IKEEEQKYQTVDTLRQEYCFIPFKYRDGYLISIL 250 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + K I+F + ++ +L + + + L G++SQQ+R AL+ + G+ + + Sbjct: 251 KETEGKTIIIFTMKCSGCTKLVMMLRQMGYAAIPLHGKMSQQKRLIALEKFKSGKRGILV 310 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ATDVA+RG+D+P++++VI+ + P++ +HR GRT RAG+ G ++ ++ Q Sbjct: 311 ATDVASRGLDIPNVDIVINYDCPLEPKDYVHRVGRTARAGKSGYAITLVTQ 361 >gi|255071997|ref|XP_002499673.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299] gi|226514935|gb|ACO60931.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299] Length = 413 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/372 (32%), Positives = 193/372 (51%), Gaps = 13/372 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P + DV+ AQ+G+GKT F + L E Sbjct: 46 NLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCAGVLQQLDYE 105 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL +APTRELA Q+ + + L V C+GG SV ++R LQ+G Sbjct: 106 KEECQ------ALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQSGV 159 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ D +R + L ++K LDEADEML GF+D I I P K ++ +F Sbjct: 160 HVVVGTPGRVYDMLRRRALKPDYIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVGVF 219 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ P + + + VR+ + + I V V + + + + ++ Sbjct: 220 SATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAI 279 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +++F +TR V T + F V A G++ Q R ++ R G +RV I TD+ Sbjct: 280 TQSVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGID+ + LVI+ +L + PEN LHR GR+GR GRKG+++ + ++ ERL ++ Sbjct: 340 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKD----DERLLQDVQ 395 Query: 365 --VSVVWEPAPS 374 V E PS Sbjct: 396 RFYQTVIEELPS 407 >gi|154345774|ref|XP_001568824.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066166|emb|CAM43956.1| putative DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 527 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 202/377 (53%), Gaps = 12/377 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A +E G+ + T +Q + + +D++ AQTGSGKT A+ L L + LL + P + Sbjct: 67 ACAEAGWQHPTRIQASTITVVAEGRDLIGVAQTGSGKTGAYALPLVNWLLTQ-----PKT 121 Query: 74 APLA-LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L+ L + PTRELA QV + L G+ VA +GG + + +L H++VGTP Sbjct: 122 PYLSVLVMVPTRELAQQVTAQFLLLGRSVGLRVATLVGGADMVEQACELSKRPHVIVGTP 181 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GR+ DH+ KG + L A+VLDEAD+MLD+ + +I+ IL+ P+ RR ++FSAT+S Sbjct: 182 GRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQDRRTMLFSATLST 241 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L K +D V + + +N + + + + + L + ++FC Sbjct: 242 KVDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLFLTKETGNHILIFC 301 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + A V R T L + + L G + Q R+ AL ++G+ R+ I TDVA RG+D+P Sbjct: 302 RSAALVHRITLALRTLGHRALPLMGRMDQSNRNIALTKFKEGKVRMLICTDVAQRGLDIP 361 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 ++V++ L + E+ +HR GRT RAG +G +V +I Q +++ ++ V V P Sbjct: 362 HTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQKIEQQTGVKCVEYP 421 Query: 372 APSVEAIRERDAQRILQ 388 ++ E + Q +LQ Sbjct: 422 -----SLPESEVQLVLQ 433 >gi|330811885|ref|YP_004356347.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379993|gb|AEA71343.1| Putative ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 445 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 176/335 (52%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + L +D++ +AQTG+GKT F + L L E + + A+ Sbjct: 15 ALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLLQLLTTEGPKVA-AN 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + AL + PTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 74 SVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMKLRKGVDLLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R L + L+ +VLDEAD MLDLGF +++ I + PKKR+ L+FSAT S AI Sbjct: 134 RLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKRQTLLFSATFSDAI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N + + V V + V+++R + + +VF T Sbjct: 194 RLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMRKNKWRQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIEDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 LV++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLV 348 >gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp. lyrata] gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp. lyrata] Length = 455 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 114/346 (32%), Positives = 193/346 (55%), Gaps = 9/346 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AEND 67 +A G+ N + +Q L L KDV+ AQTGSGKT AF + + LL +E Sbjct: 22 KACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPK 81 Query: 68 RFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P A A ++PTRELA+Q+ + E L A + AV +GG+ ++ L H Sbjct: 82 KGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPH 141 Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH+ KG ++ LK +VLDEAD +L+ F + IL+ P++R+ +F Sbjct: 142 VIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPRERKTFLF 201 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + ++ V++ AS+ + + VA +D +V IL Sbjct: 202 SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPES 261 Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +++F T +RF ++ L F+ + +SG+++Q +R AL + G + + TDVA Sbjct: 262 TSMIFTRT-CDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVA 320 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366 >gi|291326441|ref|ZP_06124507.2| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131] gi|291314194|gb|EFE54647.1| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131] Length = 442 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 198/375 (52%), Gaps = 16/375 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY + T +Q+ + L D+L SAQTG+GKT F L + L+ R Sbjct: 16 AINELGYESPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQKLIT-TPRSGKDR 74 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QV ++ + V GGVS++ + L+ G I++ TP Sbjct: 75 KPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKLRGGVDILIATP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S ++ VLDEAD MLD+GF DI +++ PKKR+ L+FSAT S Sbjct: 135 GRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVINKLPKKRQNLLFSATFSDE 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V + +A N + LV + + ++ + +VF Sbjct: 195 IKQLANKLLNNPVTIEVAPRNSASEQVAQYVHLVDKKRKAELLSFMIGRENWQQVLVFTR 254 Query: 253 TRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 T+ +R LAEHL + A+ G SQ R+ AL + G RV +ATD+AARG+ Sbjct: 255 TKHGANR----LAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGL 310 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANV 365 D+ L V++ EL + E+ +HR GRTGRA GM+V ++ + + E+L +++ Sbjct: 311 DIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLKDIEKLLKKSIP 370 Query: 366 SVV---WEPAPSVEA 377 + +EP PS++A Sbjct: 371 LMAIEGYEPDPSIKA 385 >gi|114794629|pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna gi|114794633|pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna gi|217035449|pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State gi|217035453|pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State Length = 413 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378 >gi|7661920|ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens] gi|109118862|ref|XP_001110130.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Macaca mulatta] gi|297701955|ref|XP_002827960.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Pongo abelii] gi|332263899|ref|XP_003280987.1| PREDICTED: eukaryotic initiation factor 4A-III [Nomascus leucogenys] gi|20532400|sp|P38919|IF4A3_HUMAN RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic initiation factor 4A-like NUK-34; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3; AltName: Full=Nuclear matrix protein 265; Short=NMP 265; Short=hNMP 265 gi|295982193|pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery gi|295982194|pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery gi|13177790|gb|AAH03662.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo sapiens] gi|13325146|gb|AAH04386.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo sapiens] gi|15029856|gb|AAH11151.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo sapiens] gi|48145617|emb|CAG33031.1| DDX48 [Homo sapiens] gi|60655857|gb|AAX32492.1| DEAD-box polypeptide 48 [synthetic construct] gi|119609990|gb|EAW89584.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo sapiens] gi|119609991|gb|EAW89585.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo sapiens] gi|158254648|dbj|BAF83297.1| unnamed protein product [Homo sapiens] gi|168274374|dbj|BAG09607.1| eukaryotic initiation factor 4A-III [synthetic construct] Length = 411 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378 >gi|86148269|ref|ZP_01066565.1| ATP-dependent RNA helicase [Vibrio sp. MED222] gi|218710959|ref|YP_002418580.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32] gi|254797693|sp|B7VME9|RHLB_VIBSL RecName: Full=ATP-dependent RNA helicase rhlB gi|85833965|gb|EAQ52127.1| ATP-dependent RNA helicase [Vibrio sp. MED222] gi|218323978|emb|CAV20340.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32] Length = 436 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 188/343 (54%), Gaps = 6/343 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--A 64 +PQVI E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL Sbjct: 17 LPQVI-EGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTP 75 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 E++ P + P A+ +APTRELA+Q+ + + L A TG+ A+ GG S ++ ++ G Sbjct: 76 EHEGRKP-NQPRAIIMAPTRELAIQIYNDADSLVASTGIKAALAYGGESYDKQLGKIEEG 134 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRM 182 A I++GT GR+ D + K N++H++AVVLDEAD M DLGF DI F+ PK R Sbjct: 135 ADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLN 194 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT+S + LA + + V + E + I + + + ++ Sbjct: 195 MLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSNEHKMALLQTLIEEE 254 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 AI+F +T+ LA +V L+G++ Q++R L+ G + +ATD Sbjct: 255 WPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDLLVATD 314 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 315 VAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSI 357 >gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1 [Acyrthosiphon pisum] Length = 551 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 117/367 (31%), Positives = 196/367 (53%), Gaps = 10/367 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N P + + G+ T +Q + K+++ AQTGSGKT+ + L A + Sbjct: 143 NFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLP-AVVHINN 201 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124 + P+AL +APTRELA Q+ +++ L+ ++ + + CI GG + RDL NG Sbjct: 202 QEPLKKGDGPIALVLAPTRELAQQI-QKVAGLFNQSTYLRSTCIYGGAPKSHQARDLMNG 260 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 IV+ TPGRL D + + N+ +VLDEAD MLD+GF I I+ R++LM Sbjct: 261 VEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLM 320 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR--- 240 +SAT + LA ++ D +++N+ S + +I + ++++ ++++L+ Sbjct: 321 WSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQDIA 380 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 I+F T+ V T+ + + V + G+ SQ ER + L+ R GRA + +A Sbjct: 381 NMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANILVA 440 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359 TDVAARG+D+ D++ VI+ + +N E+ +HR GRTGR+ +KG S + ++A+ L Sbjct: 441 TDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFFTHSNSKQAKDLV 500 Query: 360 --FREAN 364 EAN Sbjct: 501 AVLTEAN 507 >gi|114794619|pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii gi|114794620|pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii gi|114794621|pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii gi|114794622|pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii Length = 391 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 35 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 88 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 89 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 148 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 149 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 208 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 209 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 268 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 269 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 328 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 329 NYDLPNNRELYIHRIGRSGRYGRKGVAI 356 >gi|74006746|ref|XP_861599.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) isoform 13 [Canis familiaris] Length = 656 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/361 (33%), Positives = 193/361 (53%), Gaps = 25/361 (6%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----ENDRFSP-A 72 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN R+ Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEENGRYGRRK 258 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H++V TP Sbjct: 259 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 318 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMFSAT 188 GRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R +MFSAT Sbjct: 319 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 378 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-A 247 I LA+++ + + + + +I + V V SD+ + ++++L G + Sbjct: 379 FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLT 438 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ L + ++ G+ SQ++R AL R G++ + +AT VAARG Sbjct: 439 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 498 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F E N+++ Sbjct: 499 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNERNINI 546 Query: 368 V 368 Sbjct: 547 T 547 >gi|71995724|ref|NP_490761.2| hypothetical protein Y65B4A.6 [Caenorhabditis elegans] gi|31746585|gb|AAK29954.2| Hypothetical protein Y65B4A.6 [Caenorhabditis elegans] Length = 399 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 111/337 (32%), Positives = 189/337 (56%), Gaps = 13/337 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + L+ +DV+ AQ+G+GKT F +++ +L + AL Sbjct: 45 GFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ------VRETQAL 98 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 99 ILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 158 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ + I P ++++ SAT+ I + Sbjct: 159 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 218 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254 + D +R+ + + I + VA+ DR+ + ++++ A++FC+TR Sbjct: 219 KFMTDPIRILVKRDELTLEGI--KQFFVAV-DREEWKFDTLIDLYDTLTITQAVLFCNTR 275 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ G++ Q++R ++ R G RV I+TDV ARG+D+P + Sbjct: 276 RKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVS 335 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 LVI+ +L +N E +HR GR+GR GRKG+++ + Q+ Sbjct: 336 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 372 >gi|60652753|gb|AAX29071.1| DEAD box polypeptide 48 [synthetic construct] Length = 412 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378 >gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293] gi|74669652|sp|Q4WJE9|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3 gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293] Length = 472 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 186/340 (54%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L+ +D++ A+TGSGKT AF L + L+ F Sbjct: 65 EACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQSF--- 121 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L +APTRELA Q+ + E L + V AV +GG+ + + L HI+V TP Sbjct: 122 ---FGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATP 178 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P++RR +FSAT+S Sbjct: 179 GRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSS 238 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+++S Q S + + + +D +V +L ++ I+F Sbjct: 239 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSTIIF 298 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R + +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 299 TRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ +L ++ + +HR GRT RAG+ G+++ + Q Sbjct: 359 PSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ 398 >gi|297539139|ref|YP_003674908.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp. 301] gi|297258486|gb|ADI30331.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301] Length = 532 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 180/335 (53%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L D+L AQTG+GKT F L + L + Sbjct: 21 AINDAGYTTPTPIQSKAIPQVLSGGDLLAGAQTGTGKTAGFTLPILHLLSQKPLSEVVKG 80 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA Q+ ++ + V GGV+ + + L+ I+V TPG Sbjct: 81 RPRCLMLTPTRELAAQIEESVKVYGKFLPLTSTVIFGGVNANPQIARLKKPLDILVATPG 140 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI+ IL PK+R+ L+FSAT S I Sbjct: 141 RLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAMLPKQRQNLLFSATFSDEI 200 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V +A N ++ +VA + + ++++ + + ++F T Sbjct: 201 KALADGLLHNPGFVEVARRNTASELVEQTVHMVAQGHKRELMSHLIQQNDWQQVLIFTRT 260 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R + L + Q A+ G SQ R+ AL +DG RV +ATD+AARG+D+ L Sbjct: 261 KHGANRLAEKLVKDGIQSAAIHGNKSQSARTKALAQFKDGTMRVLVATDIAARGLDIDQL 320 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + PE+ +HR GRTGRAG G +V ++ Sbjct: 321 PQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLV 355 >gi|254498821|ref|ZP_05111531.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12] gi|254351952|gb|EET10777.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12] Length = 418 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 179/335 (53%), Gaps = 2/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+SE GY + +Q + LR D+L SAQTG+GKT +F L + L N + ++ Sbjct: 15 AVSESGYNEPSPIQAQSIPTILRGNDLLASAQTGTGKTASFVLPILQRL--HNQPRAKSN 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV + + AV GGV + + L+ G I+V TPG Sbjct: 73 HTKVLILTPTRELAAQVHESIRQYGKHLSLRSAVVFGGVKISPQMMKLRGGVEILVATPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + + S + +VLDEAD MLD+GF DI+ I++ PK+R+ L+FSAT S AI Sbjct: 133 RLMDLYQQRAIQFSDVNTLVLDEADRMLDMGFIHDIKRIINLLPKERQNLLFSATFSEAI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TLAK V +++A N + V + + + +++ + +VF T Sbjct: 193 RTLAKGLLNKPVEIDVAPRNTTAIAVKQTVHPVDKNRKHALLSHLIHKNKWGQTLVFSKT 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + ++ + LAE A+ G SQ +R+ L + G + +ATD+AARGID+ L Sbjct: 253 KHGANKLVQQLAEEHIYAAAIHGNKSQSQRTKVLADFKSGELHILVATDIAARGIDIDQL 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 313 PCVVNYDLPQVAEDYVHRIGRTGRAGASGSAISLV 347 >gi|326571018|gb|EGE21042.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC7] Length = 391 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 11/360 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 +K F+++P + I +A+ + LT +Q IL L +D + AQTG+GKT F + + Sbjct: 6 VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65 Query: 59 ASTLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSV 114 +LL + D P AL +APTRELA Q+ + L + + +CI GG Sbjct: 66 IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCHEL-TRFSQLYNLCITGGSDF 124 Query: 115 HRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 ++ L I++GTPGR+ D + L + ++ VLDEAD MLD+GF DI+ I+ Sbjct: 125 DKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIV 184 Query: 174 DSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 P +R+ L+FSAT + + LA + V IA E++ + ID + LV ++ Sbjct: 185 RHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREK 244 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 +A+ IL K I+F + + V R L H +V LSG+++QQ+R LQ + Sbjct: 245 TSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRERYLQRFK 303 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 DG V +ATDVA RGI + D+ VI+ L P++ +HR GRTGRAG G+S+ + +N Sbjct: 304 DGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEN 363 >gi|297243779|ref|ZP_06927709.1| ATP-dependent RNA helicase [Gardnerella vaginalis AMD] gi|296888200|gb|EFH26942.1| ATP-dependent RNA helicase [Gardnerella vaginalis AMD] Length = 642 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 195/378 (51%), Gaps = 18/378 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + E L G +Q+A L L+ ++L +TGSGKT+AF + L + L AEN Sbjct: 176 VPEPLVEVLRADGKTTAFPIQQATLPDSLQGANILGRGRTGSGKTLAFSIPLVARL-AEN 234 Query: 67 ---------DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113 +R S S AP A+ +APTREL Q+ + L A G+ GGV Sbjct: 235 FVDLIHSDKNRKSRESSDIPAPRAIILAPTRELVHQIDDVIAPLAAAYGMCTVTVYGGVR 294 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 R+ L+ GA IV+ PGRL D +R L + + VLDEADEM D+GF + +L Sbjct: 295 YQRQVSQLKQGAQIVLACPGRLEDLLRQGALTLEKVMVSVLDEADEMADMGFLPAVTRLL 354 Query: 174 DS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 + +P +RML FSAT+ ++TL + + +AV + + Q + + V+ D+ Sbjct: 355 EQVAPDGQRML-FSATLDRQVSTLVERFLPNAVVHAVDDADCQVDTMTHHIFAVSAGDKY 413 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 + + G K +I F T+ K + V L G LSQ +R L + + Sbjct: 414 EVLRKLAS--GKKRSIFFTRTKYQAKNMAKKFVQQGIPAVDLQGNLSQNQRDRHLAVFAE 471 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 G RV +ATDVAARGID+ D+ LV+ E +P++ LHRSGRT RAG +G V ++ N Sbjct: 472 GLVRVLVATDVAARGIDISDVALVVQTEPPEDPKSFLHRSGRTARAGEEGDVVTLVLPNQ 531 Query: 353 QRRAERLFREANVSVVWE 370 +R A + R+A + E Sbjct: 532 KRAAHMMLRKAGIHAKAE 549 >gi|290996680|ref|XP_002680910.1| dead box helicase protein [Naegleria gruberi] gi|284094532|gb|EFC48166.1| dead box helicase protein [Naegleria gruberi] Length = 657 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/353 (34%), Positives = 203/353 (57%), Gaps = 14/353 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREK----DVLVSAQTGSGKTVAFGLALASTLL 63 PQ++ E G+ +T++Q + L EK D++ A TG GKT+AF L + + + Sbjct: 69 PQLLKSLKKEFGFEYMTAIQHLTIPNALGEKGKGKDIIAQAATGQGKTLAF-LVPSLSCM 127 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 EN++ + +APTRELA+Q+ + L T A IGG V E+ L + Sbjct: 128 MENEK--NVHGIYIMVLAPTRELALQIQTVADKLLKHTNYKAACVIGGNKVSVEQAQLAD 185 Query: 124 -GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 +++ +PG+ DHI+ + L+ +HLK +LDEAD +LD GF + ++ I+ PK+R+ Sbjct: 186 PTVRVLIASPGKCLDHIQRESLDCTHLKFFILDEADRLLDSGFEETLKKIVMQLPKQRQT 245 Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNAIVNILR 240 +FSAT++ + LA + + D +++ + + +++ S ++ R V + A+V++LR Sbjct: 246 YLFSATMTDKVDDLAHISLKNDIMKLGLDNGGSKRVSTLEQRYYEVPNDKKMAALVSVLR 305 Query: 241 YHGAKNAIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNAL-QMMRDGRARV 297 + K I F ST+ SV T VL A + VV LSG ++Q++RS Q M D + Sbjct: 306 NNVDKKIITFVSTKLSVEFATTVLQNASGVGNVVQLSGNMTQEKRSEIFFQFMEDRNPGI 365 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 +AT+VAARG+D P+++L++ ++ P + HR+GRT RAG+KG+SV F+ P Sbjct: 366 LVATNVAARGLDFPNVDLIVQFDIPEQPADYFHRAGRTARAGKKGLSVLFLTP 418 >gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3] gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC 18188] Length = 482 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 188/340 (55%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY + T +Q + L+ +D++ A+TGSGKT AF L + L+ + P Sbjct: 69 EACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEK-----PQ 123 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L +APTRELA Q+ E L + V AV +GG+ + + L HIVV TP Sbjct: 124 SL-FGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHIVVATP 182 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL P++RR +FSAT+S Sbjct: 183 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSS 242 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q S + + + +D +V +L + ++AIVF Sbjct: 243 KVESLQRASLSNPLRVSISSSKYQTVSTLLQSYLFIPHKYKDLYLVYLLNEYAGQSAIVF 302 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 303 TRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDI 362 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ +L + + +HR GRT RAG+ G + ++ Q Sbjct: 363 PSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQ 402 >gi|187734959|ref|YP_001877071.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425011|gb|ACD04290.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 604 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 202/376 (53%), Gaps = 16/376 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ EA+ G+ +S+QE + + D++ + TGSGKT+AF + + E Sbjct: 14 PEIL-EAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPALECIDPEE- 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAH 126 LA+ PTRELAVQ+ RE++ L V AV I G S R + D L+ G Sbjct: 72 -----RCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALRRGVQ 126 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 VVGTPGR+ D + L + L+ ++LDEADEMLD+GF +DIE I D+ P+ ++ L FS Sbjct: 127 FVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQTLFFS 186 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+SP I+ L + K+ V+++I I+ V S R + +L K Sbjct: 187 ATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSRLLDTGKIKM 246 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF +T+ V L + V L G++ Q R + R G R+ +ATD+AAR Sbjct: 247 GLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLVATDIAAR 306 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363 G+D+ D++ V++ EL +PE+ +HR GRT RAGRKG ++ + + ++ R ER Sbjct: 307 GLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIERF---- 362 Query: 364 NVSVVWEPAPSVEAIR 379 + V P P + A++ Sbjct: 363 -IGVKLTPEPVLTAVQ 377 >gi|6735368|emb|CAB68189.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] Length = 603 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 194/359 (54%), Gaps = 15/359 (4%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AENDRFSPASAP 75 YV T VQ + L E+D++ AQTGSGKT AF + S ++ E R S A P Sbjct: 171 YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYP 230 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 A+ ++PTRELA Q+ E + +TGV V V GG +H++ R+L+ G I+V TPGRL Sbjct: 231 FAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRL 290 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK-RRMLMFSATISP 191 D + +++ ++ + LDEAD MLD+GF I I +D P+ R+ ++FSAT Sbjct: 291 NDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPS 350 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA ++ + + + + I R V SD+ + ++++L H + Sbjct: 351 QIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLL--HAQRETQ--D 406 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L + F ++ G+ +QQER AL+ + GR + +ATDVAARG+D+P Sbjct: 407 KTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIP 466 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV 367 + V++ +L ++ ++ +HR GRTGRAG+ G++ +N + R L +EAN V Sbjct: 467 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEV 525 >gi|146340507|ref|YP_001205555.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278] gi|146193313|emb|CAL77329.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278] Length = 476 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 181/338 (53%), Gaps = 6/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +QE + L +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTILEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + A + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLTRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +V+DEAD MLD+GF DIE I P R+ L F+AT+ P I Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILR-YHGAKNAIVF 250 + + + +V ++ + V + + +LR KNAI+F Sbjct: 192 RRITDAFLHNPQKVEVSKPATTAVTVTQLQVPSGREAHQKREVLRRLLREAKDLKNAIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ K L +H F V AL G++ Q R AL R G + +A+DVAARG+D+ Sbjct: 252 CNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARMAALDQFRKGELPLLVASDVAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P++ V + ++ + ++ +HR GRTGRAGR G ++ ++ Sbjct: 312 PEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIV 349 >gi|296113215|ref|YP_003627153.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4] gi|295920909|gb|ADG61260.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4] gi|326560208|gb|EGE10596.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 7169] gi|326562767|gb|EGE13063.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 103P14B1] gi|326567877|gb|EGE17978.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 12P80B1] gi|326570281|gb|EGE20326.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC8] gi|326573316|gb|EGE23284.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 101P30B1] gi|326576868|gb|EGE26774.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis O35E] Length = 391 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 11/360 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 +K F+++P + I +A+ + LT +Q IL L +D + AQTG+GKT F + + Sbjct: 6 VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65 Query: 59 ASTLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSV 114 +LL + D P AL +APTRELA Q+ + L + + +CI GG Sbjct: 66 IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCREL-TRFSQLYNLCITGGSDF 124 Query: 115 HRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 ++ L I++GTPGR+ D + L + ++ VLDEAD MLD+GF DI+ I+ Sbjct: 125 DKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIV 184 Query: 174 DSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 P +R+ L+FSAT + + LA + V IA E++ + ID + LV ++ Sbjct: 185 RHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREK 244 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 +A+ IL K I+F + + V R L H +V LSG+++QQ+R LQ + Sbjct: 245 TSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRERYLQRFK 303 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 DG V +ATDVA RGI + D+ VI+ L P++ +HR GRTGRAG G+S+ + +N Sbjct: 304 DGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEN 363 >gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509] Length = 454 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|325275059|ref|ZP_08141046.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51] gi|324099808|gb|EGB97667.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51] Length = 483 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 187/341 (54%), Gaps = 8/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67 + A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ S L A + Sbjct: 105 VMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPAPKE 164 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAH 126 R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ Sbjct: 165 RY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCD 222 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184 I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K R+ L+ Sbjct: 223 ILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLL 282 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT + + LAK + + V I EN ++ VA SD+ + N++ + Sbjct: 283 FSATFTEDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNRW 342 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VF + + V R + L LSG++ Q +R L+ R+GR V +ATDVA Sbjct: 343 ERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGRITVLVATDVA 402 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGI + + VI+ L +P++ +HR GRTGRAG G+S+ Sbjct: 403 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTNGVSI 443 >gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469] gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469] Length = 454 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|197334932|ref|YP_002155940.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] gi|197316422|gb|ACH65869.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] Length = 431 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 190/338 (56%), Gaps = 2/338 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL+E GY LT +Q+ + + D+L +AQTG+GKT AF L + LL ++ Sbjct: 10 PEIV-KALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVIQQLL-DSK 67 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + + AL +APTRELA Q+ + T + V GG + + R L+ G I Sbjct: 68 KSATRRTARALILAPTRELAEQIAVNIADYTKYTSLTVTSVFGGKKMSSQERALEPGVDI 127 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL +HI + ++I++L+ +V DEAD MLD+GF + I I+ ++++FSA Sbjct: 128 LVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSPQIMLFSA 187 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S + LA + + R+++ EN S I + V + + ++ + Sbjct: 188 TSSAQMNKLASDILRKPKRISVDPENTTASTIAHVVYPVDEERKTELLSELIGRKNWQQV 247 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF + + + + K L + V G+ +Q R AL+ ++G+ARV +ATDVAARG Sbjct: 248 LVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATDVAARG 307 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +D+ DL VI+ ++ E+ +HR GRTGRAG+KG ++ Sbjct: 308 LDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAI 345 >gi|172040180|ref|YP_001799893.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109] gi|171851484|emb|CAQ04460.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109] Length = 497 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 190/350 (54%), Gaps = 15/350 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EAL + G ++QE L LR D++ A+TG GKT+ FG+ L + + Sbjct: 29 IAEALEQAGMPTAFAIQELTLPIALRGDDLIGQARTGMGKTLGFGVPLLDRIFDDAGITE 88 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKT-------GVVVAVCIGGVSVHRERRDLQN 123 + L + PTREL +QV +L A V V GGV +++ R L Sbjct: 89 LDGSVRGLVVVPTRELCLQVAEDLTLATANLVIPANDHRVTVTPIYGGVGFNQQIRALSR 148 Query: 124 GAHIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G +VVGTPGRL D H RG+ L +S ++ +VLDEADEMLD GF DDI I+ + R+ Sbjct: 149 GTDVVVGTPGRLLDLHRRGE-LELSGVEVLVLDEADEMLDQGFLDDIRQIMSLTSPDRQT 207 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDNAIVNI 238 ++FSAT+ + +L++ + K V I +++ +D R +A DR + + I Sbjct: 208 MLFSATMPGPVLSLSREFMKQPVM--IQADSTAAADTHERVTQIAFQSHKLDRMSTLSRI 265 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ G IVF T+ + + LA F+V A+ G++ Q +R +LQ+ RDG V Sbjct: 266 LQSPGRGRTIVFTPTKRQAAMVAEDLAAWGFRVGAVHGDMRQADREQSLQLFRDGAVDVM 325 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARGID+ D+ V++ ++ + +HR GRT RAG+ G ++ ++ Sbjct: 326 VATDVAARGIDVTDVTHVVNYQVPEDERTYVHRIGRTARAGKDGTAITLV 375 >gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio angustum S14] gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio angustum S14] Length = 427 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/347 (34%), Positives = 181/347 (52%), Gaps = 11/347 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+E GY T VQ+ + L+ DV+ AQTG+GKT AF L L L+ + Sbjct: 14 KALTELGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFALPLLQRLMTLPSQAEQV 73 Query: 73 SAPL-----------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 S + AL + PTRELA QV + T + VAV GG S++ + + L Sbjct: 74 STAIENNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTEIKVAVAYGGTSMNVQVKAL 133 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 GA I+V TPGRL DH+ +++S ++ VLDEAD MLD+GF DI+ I+ P +R+ Sbjct: 134 NAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVDIQRIMKRMPAERQ 193 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT S + LA + + V + N ++ V + + ++ Sbjct: 194 TLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQMVYPVDKHRKAELLAYLIGS 253 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + +VF T+ + K L + +++G+ SQ R AL + G+ RV +AT Sbjct: 254 RNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGKTRVLVAT 313 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARG+D+ LE V++ ++ E+ +HR GRTGRAG G ++ ++ Sbjct: 314 DVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLM 360 >gi|239996465|ref|ZP_04716989.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas macleodii ATCC 27126] Length = 441 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 112/337 (33%), Positives = 189/337 (56%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + LT +QE + P ++ KD++ S++TGSGKT AF + + L+++ + Sbjct: 16 LETKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRLMSQ--KALSRQD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P AL +APTRELA QV E + + + ++ +GG + + + + L+ HI+VGT GR Sbjct: 74 PRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKALRRNPHIIVGTAGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI-SPA 192 + DH+ K + ++ L+ ++ DEAD MLDLGF ++ I D + +KR+ ++FSAT+ + Sbjct: 134 VADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKRQTMLFSATLDNIE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNAIVFC 251 + + K AVRV + +H DI+ + D + I+ L AIVF Sbjct: 194 LKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFADNVDNKDQILQFELANRTYNQAIVFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR R +L E + +AL G++ Q +R+ + G+ + + TD+A+RG+DL Sbjct: 254 ATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQHSILVTTDLASRGLDLS 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + LV++ +L N + +HR GRTGRAG+KG + +I Sbjct: 314 KVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLI 350 >gi|153834694|ref|ZP_01987361.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01] gi|148868890|gb|EDL67950.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01] Length = 437 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 188/342 (54%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65 PQV E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL E Sbjct: 18 PQVT-EGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ LQ+G Sbjct: 77 HEGRKP-TQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 I++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S + LA + + V + E + I + D+ + ++ Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AIVF +T+ LA +V L+G++ Q++R L+ G + +ATDV Sbjct: 256 PDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|162458395|ref|NP_001105396.1| translational initiation factor eIF-4A [Zea mays] gi|2341061|gb|AAB67607.1| translational initiation factor eIF-4A [Zea mays] Length = 414 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 191/355 (53%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 60 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV + PA Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDNERMLFDIQKFYNVLIEELPA 408 >gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 455 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 195/371 (52%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCS 252 LA+ + + + +A N + V R ++++L G + +VF Sbjct: 195 KALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD-KKRKRELLSLLIGQGNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ + Sbjct: 254 TKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDLRVLVATDIAARGLDIEE 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQN-MQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G +S+ I ++ + R E+L ++ + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCIDEHKLLRDIEKLLKKEIPRITT 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 PGYEPDPSIKA 384 >gi|40788956|dbj|BAA04879.2| KIAA0111 [Homo sapiens] Length = 412 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 58 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 112 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 172 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 232 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 292 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 352 NYDLPNNRELYIHRIGRSGRYGRKGVAI 379 >gi|2500518|sp|Q40465|IF411_TOBAC RecName: Full=Eukaryotic initiation factor 4A-11; Short=eIF-4A-11; AltName: Full=ATP-dependent RNA helicase eIF4A-11 gi|485987|emb|CAA55737.1| unnamed protein product [Nicotiana tabacum] Length = 413 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 191/355 (53%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D +S AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YSLVECQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ+G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR G +GR GRKG+S+ + ++ +R + + NV + PA Sbjct: 353 NYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPA 407 >gi|167752757|ref|ZP_02424884.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216] gi|167659826|gb|EDS03956.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216] Length = 393 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 185/358 (51%), Gaps = 21/358 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY+ T +Q+ + L +D+L AQTG+GKT AF + + L + + Sbjct: 14 ILKAIGEKGYLAPTPIQQKGIPVALDGRDMLGIAQTGTGKTAAFAIPILQHL-SSGMQAE 72 Query: 71 PASAPL------------------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112 P P AL + PTRELAVQ+G G+ GGV Sbjct: 73 PTDVPRRNRRGRNHGREYGVRPIRALILTPTRELAVQIGDSFSDYGKYVGLKHLTIFGGV 132 Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172 + L+ G I++ TPGRL D I + + + + VLDEAD MLD+GF DI+ + Sbjct: 133 KQGPQVEALRGGVDILIATPGRLHDLIGQRFVELDAITHFVLDEADRMLDMGFVADIKRL 192 Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 L PK R+ L FSAT+ I L+K+ D VRV + ID R V ++ Sbjct: 193 LPLLPKSRQTLFFSATMPADIVALSKSMLTDPVRVEVTPVASAVDAIDQRVYFVEKPEKK 252 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 +V++LR K+ +VF T+ +++L++ + A+ G SQ R L + Sbjct: 253 KLLVSLLREED-KSVLVFSRTKHGADNISRLLSKSGIRSEAIHGNKSQNHRQRVLTDFKS 311 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 G+ RV +ATD+AARGID+ +LE+VI+ +L PE +HR GRTGRAG G ++ F P Sbjct: 312 GKIRVMVATDIAARGIDIRELEIVINYDLPDVPETYVHRIGRTGRAGHSGTALTFCTP 369 >gi|158522360|ref|YP_001530230.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511186|gb|ABW68153.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans Hxd3] Length = 425 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 128/356 (35%), Positives = 192/356 (53%), Gaps = 11/356 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQV + E GY T +Q + P + +DV+ AQTG+GKT AF L + L+ Sbjct: 10 PQV-AAGIKEAGYAVPTPIQVQAIAPVMENRDVMGMAQTGTGKTAAFVLPILHRLMKGQK 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AL +APTRELA Q + + L KTG+ A GGV + + + L+ I Sbjct: 69 -----GGIRALILAPTRELAEQTHQAIGVLGRKTGLKSATVYGGVGITPQIQKLKK-VDI 122 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VV PGRL DHI + N+S L+ +V+DEAD++ D+GF DI+ IL PK+R+ L+FSA Sbjct: 123 VVACPGRLLDHIGRRTANLSKLEVLVIDEADQLFDMGFFPDIKKILTHLPKQRQTLLFSA 182 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+ I LA + ++ V + +E + + + VA + ++++L+ A++ Sbjct: 183 TMPAEIRKLAADILQNPATVQVGNEAPADT-VSHALYPVAQHLKTAFLLDLLKQTQARSV 241 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ + LA F+ +L G LSQ +R AL R G ++ +ATD+AARG Sbjct: 242 LVFTRTKHRAKNLDQKLAGAGFRSTSLQGNLSQVKRQAALDGFRKGTFQILVATDIAARG 301 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360 ID+ + VI+ ++ S PE +HR GRTGRA G + I +NM R RL Sbjct: 302 IDVTRVSHVINYDVPSTPEAYIHRIGRTGRATCTGEAFTFITGEDRNMVRAINRLL 357 >gi|242096928|ref|XP_002438954.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor] gi|241917177|gb|EER90321.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor] Length = 414 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 191/355 (53%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 60 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV + PA Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPA 408 >gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4] gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium chloromethanicum CM4] Length = 510 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 178/337 (52%), Gaps = 1/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + AL E GYV T +Q + P + +D+ AQTG+GKT AF L + L + + R Sbjct: 11 QPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLDSR 69 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 +P L ++PTRELA Q+ V GGV++ R+ R + G I+ Sbjct: 70 RAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAPGVDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + + L + ++ +VLDEAD+MLDLGF ++ I+ P KR+ L FSAT Sbjct: 130 VATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA Y + V+V + +D + + + + ++LR + + Sbjct: 190 MPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVL 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R + L + A+ G SQ +R AL RDG RV +ATD+AARGI Sbjct: 250 VFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGI 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ + V++ +L + PE+ +HR GRT RAG +G ++ Sbjct: 310 DVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAI 346 >gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina ymp] gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp] Length = 447 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 114/334 (34%), Positives = 180/334 (53%), Gaps = 1/334 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E Y T VQ + L+ +D++ +AQTG+GKT F L L L E + + ++A Sbjct: 16 LTELDYQTPTPVQSQAIPAMLKGRDLMAAAQTGTGKTAGFALPLLQRLTLEGPQVA-SNA 74 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL + PTRELA QV + + + GGVS++ + L+ G ++V TPGR Sbjct: 75 VRALVLVPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMKLRKGVDVLVATPGR 134 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D R + + L+ +VLDEAD MLDLGF +++ + + PK+R+ L+FSAT S I Sbjct: 135 LLDLYRQNAVKFAQLQTLVLDEADRMLDLGFARELDELFSALPKRRQTLLFSATFSDVIR 194 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 +A +D V V ++ N + + V + +++L+ +VF TR Sbjct: 195 QMAGELLRDPVSVEVSPRNAAAKSVKQWLIPVDKKRKSELFLHLLQEKRWGQVLVFAKTR 254 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V + + L ++ G+ Q R AL+ + G ++ +ATDVAARG+D+ DL Sbjct: 255 KGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFKAGEVQILVATDVAARGLDIDDLP 314 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 LV++ +L N E+ +HR GRTGRAG G +V ++ Sbjct: 315 LVVNLDLPINAEDYVHRIGRTGRAGSTGEAVSLV 348 >gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761630|ref|ZP_04759717.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241373938|gb|EER63471.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 458 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/353 (35%), Positives = 181/353 (51%), Gaps = 5/353 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL GY T +Q + L KD+ AQTG+GKT AF L + LA N + P Sbjct: 19 QALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALP-SIHYLATNPQARPQ 77 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L ++PTRELA Q+ R + V GGV + R+ R L G I+V TP Sbjct: 78 RGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRMLDRGTDILVATP 137 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I + L + ++ VLDEAD+MLDLGF + I PK R+ L FSAT+ Sbjct: 138 GRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNRQTLFFSATMPKT 197 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFC 251 I L+ + D V V++A ++ ++ + V S++ + L+ G A+VF Sbjct: 198 IQELSSQFLSDPVTVSVAPQSSTAERVEQFGIFVNQSEKQALLTITLKNTPGLDRALVFT 257 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ R + L A+ G SQ +R AL R+GR ++ +ATD+AARGID+P Sbjct: 258 RTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKILVATDIAARGIDVP 317 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFR 361 + V + EL + E +HR GRT RAGR G ++ I + + R ERL R Sbjct: 318 GVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSYLRSIERLTR 370 >gi|114051321|ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus] gi|154147644|ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa] gi|157821621|ref|NP_001093628.1| eukaryotic initiation factor 4A-III [Rattus norvegicus] gi|126308661|ref|XP_001370945.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna [Monodelphis domestica] gi|109825494|sp|Q2NL22|IF4A3_BOVIN RecName: Full=Eukaryotic initiation factor 4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|123780398|sp|Q3B8Q2|IF4A3_RAT RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|251764755|sp|A6M931|IF4A3_PIG RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|77748037|gb|AAI05876.1| Eukaryotic translation initiation factor 4A, isoform 3 [Rattus norvegicus] gi|84708898|gb|AAI11185.1| Eukaryotic translation initiation factor 4A, isoform 3 [Bos taurus] gi|85792296|gb|ABC84196.1| eukaryotic translation initiation factor 4A isoform 3 [Sus scrofa] gi|149054966|gb|EDM06783.1| rCG33565, isoform CRA_a [Rattus norvegicus] gi|296476097|gb|DAA18212.1| eukaryotic initiation factor 4A-III [Bos taurus] Length = 411 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378 >gi|297560235|ref|YP_003679209.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844683|gb|ADH66703.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 489 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 123/364 (33%), Positives = 194/364 (53%), Gaps = 7/364 (1%) Query: 4 FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE++ P + L+ +G +++Q A L L +DVL +QTGSGKT+AFGLAL + Sbjct: 62 FEDLEMPAQLKSTLARQGLTTPSAIQAATLPNSLAGRDVLGRSQTGSGKTLAFGLALLAR 121 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L R + PLA+ +APTRELA QV L V +GG+ + R+ R L Sbjct: 122 L---EGRVAEPRRPLAVVLAPTRELAQQVNDSLAPYARSLRVRTTTVVGGMPISRQSRAL 178 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + G +VV TPGRL D + + + VLDEAD+M D+GF + IL P + Sbjct: 179 RQGVELVVATPGRLRDLMERDDCVLDQVDVTVLDEADQMTDMGFMPQVTAILTEVPTGGQ 238 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 ++FSAT+ + TL + + D V ++ S +++ + V+ +D+ +A I Sbjct: 239 RMLFSATLDRNVDTLVRRFLNDPVVHSVDPSEGAVSTMEHHVLHVSHADKQDAATRIAAR 298 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G I+F T+ +V R K L + L G SQ +R+ L+ ++G +AT Sbjct: 299 DG--QVILFLDTKHAVDRMAKHLLNSGVRAAPLHGGRSQPQRTRTLKQFKEGTVTALVAT 356 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 +VAARGI + L+LV++ + ++ ++ LHR GRT RAG+ G V ++ + +R +RL R Sbjct: 357 NVAARGIHVDGLDLVVNIDPPTDHKDYLHRGGRTARAGQTGSVVTLVLPSERRDMDRLMR 416 Query: 362 EANV 365 A + Sbjct: 417 LARI 420 >gi|237805399|ref|ZP_04592103.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026506|gb|EGI06561.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 355 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 114/315 (36%), Positives = 173/315 (54%), Gaps = 3/315 (0%) Query: 33 PDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGR 92 P L +D++ +AQTG+GKT F L L L E + +P S AL +APTRELA QV Sbjct: 2 PVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNSI-RALVLAPTRELADQVHE 60 Query: 93 ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152 + + GGVS++ + L+ G ++V TPGRL D R K + S L+ + Sbjct: 61 SIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLHRQKAVKFSQLQTL 120 Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIA 210 +LDEAD MLD+GF + I+ +P K R+ L+FSAT + + LAK + + V I Sbjct: 121 ILDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTEPSIVEIE 180 Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270 S N +++ VA +D+ + N++ +G + +VF + + V R + L Sbjct: 181 SLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVN 240 Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330 LSG++ Q +R L+ R+G+ RV +ATDVA RGI + + VI+ L P++ +H Sbjct: 241 AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVH 300 Query: 331 RSGRTGRAGRKGMSV 345 R GRTGRAG G+S+ Sbjct: 301 RIGRTGRAGADGVSI 315 >gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436] gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436] Length = 528 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 124/352 (35%), Positives = 185/352 (52%), Gaps = 20/352 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +ALS +G +Q L L +D++ A+TG+GKT+ FGL TL+ + Sbjct: 53 ICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTLGFGL---PTLMKVH---G 106 Query: 71 PASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 PASA P A+ I PTREL QV +L +T V + GG + + Sbjct: 107 PASAKYATEVHYQGHPQAMVIVPTRELCKQVAADLRAAAKQTSVRITEIYGGAAFEPQID 166 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L G ++VGTPGRL D ++ K L + + VVLDEADEMLDLGF D+E +L P+ Sbjct: 167 ALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFLPDVEILLSRVPQT 226 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ ++FSAT+ I LA+ Y K + + Q + + ++ N I + Sbjct: 227 RQTMLFSATMPGEIVALARRYMKQPTHIRAQEADDQGATVKTVKQVIYRCHALNKIEVVA 286 Query: 240 RYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 R A+ A++F T+ + + ++ L+ F V +L G+L Q R A++ R G+ Sbjct: 287 RILQARERGLAVIFTKTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRAFRSGKVD 346 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V +ATDVAARGID+ D+ VI+ + + + LHR GRTGRAG G +V + Sbjct: 347 VLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRAGASGTAVTFV 398 >gi|18400210|ref|NP_566469.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor [Arabidopsis thaliana] gi|1170503|sp|P41376|IF4A1_ARATH RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1; AltName: Full=ATP-dependent RNA helicase eIF4A-1; AltName: Full=DEAD-box ATP-dependent RNA helicase 4 gi|16554|emb|CAA46188.1| eukaryotic translation initiation factor 4A-1 [Arabidopsis thaliana] gi|11994363|dbj|BAB02322.1| eukaryotic translation initiation factor; RNA helicase [Arabidopsis thaliana] gi|14594805|emb|CAC43288.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana] gi|15293047|gb|AAK93634.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana] gi|15450486|gb|AAK96536.1| AT3g13920/MDC16_4 [Arabidopsis thaliana] gi|20259055|gb|AAM14243.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana] gi|20466101|gb|AAM19972.1| AT3g13920/MDC16_4 [Arabidopsis thaliana] gi|22655066|gb|AAM98124.1| unknown protein [Arabidopsis thaliana] gi|23397033|gb|AAN31802.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana] gi|332641917|gb|AEE75438.1| translational initiation factor 4A-1 [Arabidopsis thaliana] Length = 412 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D FS AL Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV V E PS Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 406 >gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS] gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS] Length = 454 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIKVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|302759400|ref|XP_002963123.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii] gi|302796878|ref|XP_002980200.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii] gi|300151816|gb|EFJ18460.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii] gi|300169984|gb|EFJ36586.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii] Length = 574 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 118/352 (33%), Positives = 188/352 (53%), Gaps = 19/352 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFS 70 +A+++ GY N + +Q A + L+++DV+ A+TGSGKT AF L + + + L + Sbjct: 167 KAVNKAGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMTEEN 226 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P A+ +APTRELA Q+ E + V +GG S+ + L+ G IV+ Sbjct: 227 EAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIHVVSIVGGQSIEEQGFKLRQGCEIVIA 286 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----------- 179 TPGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 287 TPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDAEL 346 Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 R MFSAT+ PA+ LA+ Y ++ V V I + + I ++V S++ + Sbjct: 347 DEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLITQNVLMVKDSEKLD 406 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + +L K AIVF +T+ + + L + ++V L G +Q++R +L+ R Sbjct: 407 RLQRMLNDLADKTAIVFVNTKKAADGLARQLDKLGYRVTTLHGGKTQEQREISLEGFRSK 466 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R +ATDVA RGID+PD+ VI+ ++ +N E HR GRTGRAG+ G++ Sbjct: 467 RYNCLVATDVAGRGIDIPDVAHVINFDMPNNIEMYTHRIGRTGRAGKTGVAT 518 >gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60] Length = 448 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 184/345 (53%), Gaps = 8/345 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL ++GY T++Q A + P + +DVL SA TG+GKT AF L LL + S Sbjct: 17 DALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA+QV + L T + + GGVS +VV TP Sbjct: 75 GPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFNTNQDMVVATP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SP 191 GRL +I+ + + ++ ++LDEAD MLD+GF DIE + + +R+ L+FSAT+ S Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQTLLFSATLESD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248 A+ A D V V+ R+ I YRA +L + + ++LR ++ Sbjct: 195 AVHDFADRLLNDPVDVSAEPPRRERKKIQQWYYRAD--SLKHKTALLCSLLRQPDVTKSV 252 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F R V L + Q L GE+ Q +R+ A++ M DGR V +ATDVAARG+ Sbjct: 253 IFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDVAARGL 312 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 D+PD+ V + ++ + + LHR GRT RAGRKG ++ +I + Q Sbjct: 313 DIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQ 357 >gi|328880510|emb|CCA53749.1| ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712] Length = 472 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 202/379 (53%), Gaps = 13/379 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + + L+ G +Q A L L +DVL +TGSGKT+AFGL L L+ Sbjct: 34 DLPAEVLDVLARLGLDTPFPIQSATLPDALAGRDVLGRGRTGSGKTLAFGLPL---LVRA 90 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R + + P AL + PTRELA QV LE + +A +GG+S+ R+ L++GA Sbjct: 91 AGRRAESRRPHALVLVPTRELAQQVTDALEPFARALKLRLATVVGGMSIGRQATALRDGA 150 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLM 184 +++ TPGRL D + K + + A VLDEAD+M DLGF + +LD P+ +RML Sbjct: 151 EVLIATPGRLMDLVERKDCRLDRVAATVLDEADQMADLGFMPQVTELLDLVRPEGQRML- 209 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ + L + Y D V ++ + S +D+ + V +D+ I G Sbjct: 210 FSATLDRNVDLLVERYLADPVVHSVDPSSATVSTMDHHVLHVHGADKFATATEIAARDG- 268 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F +T+A+V RFTK L + AL G SQ R+ L R G V +AT+VA Sbjct: 269 -RVIMFLATKAAVDRFTKHLLGSGVRAAALHGGKSQPLRTRTLDRFRSGEVPVLVATNVA 327 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGI + +L+LV++ + ++ ++ LHR GRT RAG G+ V ++ +R RL +A Sbjct: 328 ARGIHVDELDLVVNVDPPADHKDYLHRGGRTARAGESGLVVTLVTPEERRDVARLMADAG 387 Query: 365 VSVVWEPAPSVEAIRERDA 383 + P V +R +A Sbjct: 388 IR------PQVTQVRSGEA 400 >gi|298252651|ref|ZP_06976445.1| ATP-dependent RNA helicase [Gardnerella vaginalis 5-1] gi|297533015|gb|EFH71899.1| ATP-dependent RNA helicase [Gardnerella vaginalis 5-1] Length = 609 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 134/386 (34%), Positives = 199/386 (51%), Gaps = 21/386 (5%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + E L G +Q+A L L+ ++L +TGSGKT+AF + L + L AEN Sbjct: 158 VPEPLVEVLRADGKTTAFPIQQATLPDSLQGANILGRGRTGSGKTLAFSIPLVARL-AEN 216 Query: 67 ---------DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113 +R S S AP A+ +APTREL Q+ + L A G+ GGV Sbjct: 217 FVDLIHSDKNRKSRESSEIPAPRAIILAPTRELVHQIDDVIAPLAAAYGMRTVTVYGGVR 276 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 R+ L+ GA IV+ PGRL D +R L + + VLDEADEM D+GF + +L Sbjct: 277 YQRQVSQLKQGAQIVLACPGRLEDLLRQGALTLEKVMVSVLDEADEMADMGFLPAVTRLL 336 Query: 174 DS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 + +P +RML FSAT+ ++TL + + +AV + + Q + + V+ D+ Sbjct: 337 EQVAPDGQRML-FSATLDKQVSTLVERFLPNAVVHAVDDADCQVDTMTHHIFAVSAGDKY 395 Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 + + G K +I F T+ K + V L G LSQ +R L + + Sbjct: 396 EVLRKLAS--GRKRSIFFTRTKYQAKNMAKKFVQQGIPAVDLQGNLSQNQRDRHLAVFAE 453 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 G RV +ATDVAARGID+ D+ LV+ E +P++ LHRSGRT RAG +G V ++ N Sbjct: 454 GLVRVLVATDVAARGIDISDVALVVQTEPPEDPKSFLHRSGRTARAGEEGDVVTLVLPNQ 513 Query: 353 QRRAERLFREANVSVVWE---PAPSV 375 +R A + R+A + E P+ SV Sbjct: 514 KRAAHMMLRKAGIHAKAEDVSPSSSV 539 >gi|91206662|sp|Q4WEB4|FAL1_ASPFU RecName: Full=ATP-dependent RNA helicase fal1 Length = 398 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 114/331 (34%), Positives = 181/331 (54%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG---LALASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F L + T++ E Sbjct: 43 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQVIDTVVRETQ-------- 94 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG ++ + R L G H+V GTPGR+ Sbjct: 95 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 153 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 154 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 213 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VRV + + I + V + + + + ++ A++FC+TR Sbjct: 214 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 273 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 274 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 333 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 334 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 364 >gi|156052539|ref|XP_001592196.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980] gi|160385735|sp|A7EM88|FAL1_SCLS1 RecName: Full=ATP-dependent RNA helicase fal1 gi|154704215|gb|EDO03954.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980 UF-70] Length = 399 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 113/337 (33%), Positives = 185/337 (54%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 97 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 98 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 157 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 158 IRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 217 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V + + + + ++ A++FC+TR V Sbjct: 218 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 277 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 278 DWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 337 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L N EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 338 NYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374 >gi|169860811|ref|XP_001837040.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130] gi|116501762|gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130] Length = 396 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 112/343 (32%), Positives = 190/343 (55%), Gaps = 14/343 (4%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 +++Q+ + P ++ +DV+ AQ+G+GKT F +++ ++ AL ++PT Sbjct: 47 SAIQQRAILPIIQGRDVIAQAQSGTGKTATFSISILQSIDV------TVRETQALVLSPT 100 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA Q+ + L V CIGG S+ + R L+ G H+V GTPGR+ D IR + Sbjct: 101 RELATQIQSVILALGDYMNVQCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRS 160 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L ++K +VLDEADE+L+ GF+D I + P ++++ SAT+ + + + D Sbjct: 161 LRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVVLLSATLPYDVLEMTTKFMTD 220 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260 +R+ + + I + VA+ D + + ++ A++FC+TR V Sbjct: 221 PIRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 278 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T+ + F V ++ GE+ Q+ER + R G +RV I TDV ARGID+ + LVI+ + Sbjct: 279 TEKMRASNFTVSSMHGEMVQKERDAIMAEFRSGTSRVLITTDVWARGIDVQQVSLVINYD 338 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360 L +N EN +HR GR+GR GRKG+++ FV ++++ R E+ + Sbjct: 339 LPANRENYIHRIGRSGRFGRKGVAINFVTVEDVRILRDIEQFY 381 >gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys] Length = 715 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E P L +APTRELA QV ++ + K + VA GG + + Sbjct: 180 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DHI+ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 298 EDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 416 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 515 >gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253] Length = 453 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|307823524|ref|ZP_07653753.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] gi|307735509|gb|EFO06357.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] Length = 419 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 188/341 (55%), Gaps = 12/341 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFS 70 A+++ GY + +Q + L DVL +AQTG+GKT F L + L + N+R Sbjct: 15 AIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNR-- 72 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHI 127 P+ L + PTRELA Q+G + A + V GGV ++ + L+ G I Sbjct: 73 ----PVRVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDI 128 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + + + ++ ++LDEAD MLD+GF DI I+ PKKR+ L+FSA Sbjct: 129 LVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSA 188 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I L + +++ +A N ++ A LV +++ + ++++ H + Sbjct: 189 TFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQV 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF +T+ +R T+ L + + A+ G SQ R++AL + G RV +ATDVAARG Sbjct: 249 LVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ID+ L V++ EL PE+ +HR GRTGRAG +G ++ ++ Sbjct: 309 IDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISLV 349 >gi|255955551|ref|XP_002568528.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255] gi|211590239|emb|CAP96415.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255] Length = 416 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 114/331 (34%), Positives = 180/331 (54%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG---LALASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F L + T++ E Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISTLQIIDTVVRETQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG +V + R L G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VRV + + I + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLADKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365 >gi|15222526|ref|NP_174479.1| STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] gi|75333350|sp|Q9C551|RH5_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 5 gi|12321302|gb|AAG50723.1|AC079041_16 p68 RNA helicase, putative [Arabidopsis thaliana] gi|12321459|gb|AAG50784.1|AC074309_1 RNA helicase, putative [Arabidopsis thaliana] gi|19347812|gb|AAL86356.1| putative p68 RNA helicase [Arabidopsis thaliana] gi|21436171|gb|AAM51373.1| putative p68 RNA helicase [Arabidopsis thaliana] gi|332193302|gb|AEE31423.1| DEAD-box ATP-dependent RNA helicase 5 [Arabidopsis thaliana] Length = 537 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 193/338 (57%), Gaps = 13/338 (3%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---PLALAIAPTRELAVQVGREL 94 +D++ A+TGSGKT+AFG+ +L +N + S P L ++PTRELAVQ+ L Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 G+ GG S + +++G IV+GTPGRL D I L +S + VVL Sbjct: 212 REAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVL 271 Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASEN 213 DEAD MLD+GF + + FIL ++ K R+M+MFSAT + LA+ + + ++V I S + Sbjct: 272 DEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVD 331 Query: 214 RQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN--AIVFCSTRASVSRFTKVLAEHL 268 ++ D ++ L + RD ++ +L +YH ++ +VF + R + L + Sbjct: 332 LA-ANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRG 390 Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328 ++ V++ G +Q ER+ +L + ++G + +ATDVAARG+D+PD+E+VI+ E+ Sbjct: 391 WKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDY 450 Query: 329 LHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363 +HR GRTGRAG+KG++ F P N E + REA Sbjct: 451 VHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREA 488 >gi|255072433|ref|XP_002499891.1| predicted protein [Micromonas sp. RCC299] gi|226515153|gb|ACO61149.1| predicted protein [Micromonas sp. RCC299] Length = 394 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 114/335 (34%), Positives = 184/335 (54%), Gaps = 11/335 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L G+ +++Q+ + P +DV+ AQ+G+GKT LAL +L N R Sbjct: 35 GLYSYGFEKPSAIQQRAIVPITSGRDVIAQAQSGTGKTSMISLALCQ-MLDTNTR----- 88 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL ++PTRELA Q + L V V CIGG S+ + R L +G HIV GTPG Sbjct: 89 EVQALVLSPTRELATQTEKTALALGNFMSVQVHACIGGRSIGEDIRKLDHGVHIVSGTPG 148 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D I+ + L ++KA++LDEADEML+ GF++ I + P + ++++ SAT+ + Sbjct: 149 RVFDMIKRRNLRTRNIKALILDEADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPQEV 208 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVF 250 + + D VR+ + + I + VA+ + + + ++ A++F Sbjct: 209 LEMTTKFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIF 266 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T + ++ F V ++ G++ Q+ER + R G RV I TDV ARGID+ Sbjct: 267 CNTKRKVDWLTDKMRQNNFTVSSMHGDMPQKERDAIMGEFRGGTTRVLITTDVWARGIDV 326 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + LVI+ +L +N EN +HR GR+GR GRKG+++ Sbjct: 327 QQVSLVINYDLPNNRENYIHRIGRSGRYGRKGVAI 361 >gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium extorquens PA1] gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1] gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens PA1] gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1] Length = 510 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 178/337 (52%), Gaps = 1/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + AL E GYV T +Q + P + +D+ AQTG+GKT AF L + L + + R Sbjct: 11 QPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLDSR 69 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 +P L ++PTRELA Q+ V GGV++ R+ R + G I+ Sbjct: 70 RAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAPGVDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + + L + ++ +VLDEAD+MLDLGF ++ I+ P KR+ L FSAT Sbjct: 130 VATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA Y + V+V + +D + + + + ++LR + + Sbjct: 190 MPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVL 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R + L + A+ G SQ +R AL RDG RV +ATD+AARGI Sbjct: 250 VFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGI 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ + V++ +L + PE+ +HR GRT RAG +G ++ Sbjct: 310 DVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAI 346 >gi|90023351|ref|YP_529178.1| putative ATP-dependent RNA helicase [Saccharophagus degradans 2-40] gi|89952951|gb|ABD82966.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40] Length = 436 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 191/341 (56%), Gaps = 4/341 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + +AL + + T VQ + L KD++VSA+TGSGKT AF L + L ND Sbjct: 10 QSLQKALDKLTFTKPTDVQVQTIPAVLAGKDIMVSAKTGSGKTAAFLLPMLHKFL--NDP 67 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P ++ AL + PTRELA+Q + E T + V + +GG + + ++ ++ Sbjct: 68 -RPNTSTRALILLPTRELALQTVKAFEQFAGYTQIKVGLIMGGEAYKHQVATVRKNPEVL 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL +HI+ ++ S L+ +VLDE+D MLD+GF++++ I ++R+ L+FSAT Sbjct: 127 VATPGRLVEHIKNGNVDFSDLEFLVLDESDRMLDMGFQENMLAIAAVCNEERQNLLFSAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAKNA 247 + +D VR+ + S HS+I + V S ++ +V ++ A+ Sbjct: 187 LKHKGIGGITGLLQDPVRIQVDSAKEGHSNITQQRVFADDDSHKEKLVVKLIAEEDAQRV 246 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVFC+TR + + +L + + GE++Q +R + DG+ RV +ATDVAARG Sbjct: 247 IVFCNTRLQCQKVSNILRANKLVSEYIHGEVTQSDRKQVMNRFIDGKIRVLVATDVAARG 306 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+ D++LVI+ + + +HR GRTGR+ + G+++ +I Sbjct: 307 LDIKDVDLVINFSAAFTGDEHVHRVGRTGRSDKTGLAITLI 347 >gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii] Length = 645 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 187/354 (52%), Gaps = 9/354 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ +FS Sbjct: 225 VSKSGYVKPTPVQKHGVPIISAGRDLMACAQTGSGKTAAFLLPILQHLMADGVAASQFSE 284 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL +APTREL Q+ E T V V GGVS + RDL G +I+ GT Sbjct: 285 LQEPEALIVAPTRELINQIHLEARKFAYGTCVRPVVVYGGVSTGHQIRDLCRGCNILCGT 344 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFSA 187 PGRL D I + ++ L+ VLDEAD MLD+GF D+ ++ S P K R+ LMFSA Sbjct: 345 PGRLLDVINRGKVGLTKLRYFVLDEADRMLDMGFEPDMRRLVGSPGMPTKEDRQTLMFSA 404 Query: 188 TISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 T I LA ++ K D + + + +D++ V V D+ ++ +L+ G Sbjct: 405 TYPEDIQKLAADFLKTDYLFLAVGIVGGACTDVNQEFVEVTKFDKREKLLELLKTTGTDR 464 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ L + ++ G Q+ER AL R G+ V +AT VAAR Sbjct: 465 TMVFVETKRLADFIAAFLCQEKVPTTSIHGGREQREREQALGDFRSGKCPVLVATSVAAR 524 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359 G+D+PD++ V++ +L +N + +HR GRTGR G G +V F P N + A L Sbjct: 525 GLDIPDVQNVVNFDLPNNIDEYVHRIGRTGRCGNLGRAVSFFDPDNDSQLARPL 578 >gi|302696869|ref|XP_003038113.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8] gi|300111810|gb|EFJ03211.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8] Length = 396 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 109/325 (33%), Positives = 181/325 (55%), Gaps = 11/325 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 +++Q+ + P + +DV+ AQ+G+GKT F +++ ++ AL ++PT Sbjct: 47 SAIQQRAILPITQGRDVIAQAQSGTGKTATFSISILQSIDV------TVRETQALVLSPT 100 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA Q+ + L V CIGG SV + R L+ G H+V GTPGR+ D IR + Sbjct: 101 RELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLEYGQHVVSGTPGRVFDMIRRRS 160 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L ++K +VLDEADE+L+ GF+D I + P ++++ SAT+ + + + + D Sbjct: 161 LRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVVLLSATLPYDVLEMTQKFMTD 220 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260 +R+ + + I + VA+ D + + ++ A++FC+TR V Sbjct: 221 PIRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 278 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T+ + + F V ++ GE+ Q+ER + R G +RV I TDV ARGID+ + LVI+ + Sbjct: 279 TEKMRQSNFTVSSMHGEMVQKERDAIMAEFRAGTSRVLITTDVWARGIDVQQVSLVINYD 338 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345 L +N EN +HR GR+GR GRKG+++ Sbjct: 339 LPANRENYIHRIGRSGRFGRKGVAI 363 >gi|197119659|ref|YP_002140086.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem] gi|197089019|gb|ACH40290.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem] Length = 471 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 181/337 (53%), Gaps = 6/337 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + GYV T +Q + + +DVL AQTG+GKT AFGL + L+ E Sbjct: 7 NLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLHRLVQE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 L +APTRELA Q+ L + +T + GGV+++ + + L+ GA Sbjct: 67 ERGHV-----RGLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKKLKEGA 121 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL DHI +++S ++ +VLDEAD+M D+GF D+ IL + P KR+ LMF Sbjct: 122 EIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLMF 181 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA ++ V V + S + + + V + + +L++ + Sbjct: 182 SATMPDDIRRLAHEILRNPVTVQV-SRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + ++F T+ R + L + ++ +L G LSQ R AL RDG ++ +ATD+AA Sbjct: 241 SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 RGID+ + VI+ ++ PE HR GRTGRA + G Sbjct: 301 RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTG 337 >gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis] Length = 643 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 186/340 (54%), Gaps = 10/340 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ RFS Sbjct: 222 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 281 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GGVS + R++ G ++V GT Sbjct: 282 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTAHQIREISRGCNVVCGT 341 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + ++ L+ +VLDEAD MLD+GF D+ ++ S S + R+ LMFS Sbjct: 342 PGRLLDMIGRGK-VGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 400 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I LA ++ K D + + + SD++ + V + + ++L+ G + Sbjct: 401 ATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLHDLLKTTGME 460 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ G+ Q+ER AL R G+ V +AT VAA Sbjct: 461 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALTDFRSGKCPVLVATSVAA 520 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+PD++ V++ +L +N + +HR GRTGR G G +V Sbjct: 521 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 560 >gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 EDL933] gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. Sakai] gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4113] gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4401] gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4501] gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4486] gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4196] gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4076] gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC869] gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC508] gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4024] gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4206] gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4045] gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4042] gi|209396359|ref|YP_002269466.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4115] gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. TW14588] gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. TW14359] gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000] gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966] gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. CB9615] gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185] gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933] gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai] gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4196] gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4113] gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4076] gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4401] gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4486] gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4501] gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC869] gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC508] gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4206] gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4045] gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4042] gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC4115] gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli] gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli] gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli] gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli] gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli] gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. TW14588] gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359] gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. CB9615] gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185] gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. EC1212] gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. G5101] gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. 493-89] gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H 2687] gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA 5905] gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. LSU-61] gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. 1125] gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str. 1044] Length = 455 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|89107648|ref|AP_001428.1| RNA helicase [Escherichia coli str. K-12 substr. W3110] gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739] gi|170080456|ref|YP_001729776.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638] gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A] gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae 1012] gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1] gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11] gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1] gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989] gi|238900056|ref|YP_002925852.1| RNA helicase [Escherichia coli BW2952] gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606] gi|256023607|ref|ZP_05437472.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 4_1_40B] gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50] gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1] gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1] gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1] gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1] gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1] gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1] gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1] gi|307137421|ref|ZP_07496777.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736] gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7] gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70] gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736] gi|548730|sp|P25888|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase rhlE gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. W3110] gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr. MG1655] gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110] gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739] gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B] gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638] gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A] gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae 1012] gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1] gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11] gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989] gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1] gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952] gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)] gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606] gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)] gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1] gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1] gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1] gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1] gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1] gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1] gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1] gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1] gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W] gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7] gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407] gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70] gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W] gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1] gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1] gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905] gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68] gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11] gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482] gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489] gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007] gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736] gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae 155-74] gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88] Length = 454 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|14594802|emb|CAC43286.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana] Length = 369 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D FS AL Sbjct: 15 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 68 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 69 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 128 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 129 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 188 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 189 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 248 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 249 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 308 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV V E PS Sbjct: 309 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 363 >gi|224538852|ref|ZP_03679391.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus DSM 14838] gi|224519527|gb|EEF88632.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus DSM 14838] Length = 478 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 180/343 (52%), Gaps = 4/343 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + + AL E+ Y T +QE + L +D+L AQTG+GKT AF + + LLA+ Sbjct: 8 NISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAIPIIEQLLAD 67 Query: 66 ---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + +P AL + PTRELA+Q+ L T + V GGV + +L+ Sbjct: 68 PISQQKGAPRKI-RALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKSQTDELR 126 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 G I+ TPGRL D + + + H++ VLDEAD MLD+GF D++ +L P K++ Sbjct: 127 AGTDILTATPGRLLDLMSQGFIRLDHVRHFVLDEADRMLDMGFIHDVKRLLPKLPPKKQT 186 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 L FSAT+ +I LAK+ ++ RV + + I V + + +L Sbjct: 187 LFFSATMPDSIDRLAKSLLRNPARVEVTPASSVVEIISQSVYRVEKPQKKELLAQLLLGE 246 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +VF T+ + L+ ++ G+ SQ R AL ++GR+ V IATD Sbjct: 247 AGHQVLVFSRTKHGADNIARYLSRRGITCESIHGDKSQNSRQRALSNFKEGRSNVIIATD 306 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +AARGID+ L+LV++ +L PE +HR GRTGRAG +G ++ Sbjct: 307 IAARGIDIKGLDLVLNYDLPDVPETYVHRIGRTGRAGCEGRAI 349 >gi|158334865|ref|YP_001516037.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017] gi|158305106|gb|ABW26723.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017] Length = 471 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 132/418 (31%), Positives = 208/418 (49%), Gaps = 17/418 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L G+ T +Q + L +D++ AQTG+GKT AF L + ++ P Sbjct: 16 DCLEALGFTTPTQIQAEAIPHLLAGRDIIGQAQTGTGKTAAFSLPIL-------EQLDPT 68 Query: 73 -SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL + PTRELAVQV + A + V GG S+ R+ L+ GA ++VGT Sbjct: 69 VKTPQALILTPTRELAVQVSEAVYQFKADGALRVVAIYGGQSIDRQISQLRRGAQLIVGT 128 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D + + + L VLDEADEML++GF D+ IL+ P R+ FSAT++P Sbjct: 129 PGRVLDLLSRGEIILDQLSWFVLDEADEMLNMGFIPDVRKILERVPGDRKTAFFSATMAP 188 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250 I L+K + D V V + + I+ A + + R + +L ++AI+F Sbjct: 189 EIYKLSKQFLNDPVTVTVEQPKAAPTRINQVAYRIPRTWARSTVLQAVLELEDPESAIIF 248 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 TR + T+ L + G+LSQ +R L R R R +ATD+AARG+ + Sbjct: 249 VRTRREAATLTQQLQTAGYSADEYHGDLSQSQRERLLDRFRQRRIRWVVATDIAARGLHV 308 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370 DL VI+ E + E+ +HR GRTGRAG +G ++ ++ + + + + + Sbjct: 309 DDLSHVINYEPPDSVESYVHRIGRTGRAGNEGTAISLVHALDRWKLHEIEKHIRQEIPTL 368 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGFLRI 423 P P+ AI R +++ ++ L SI E+ V L +D + IAA L++ Sbjct: 369 PTPTRSAIEGRRLEKLTEE---LHSILTGERLASFLPTVSQLGEDYDTQTIAAAALQM 423 >gi|19698881|gb|AAL91176.1| eukaryotic translation initiation factor [Arabidopsis thaliana] Length = 412 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D FS AL Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 232 KFMSKPVRILVKRDELTVEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV V E PS Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 406 >gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3] Length = 446 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|261341381|ref|ZP_05969239.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC 35316] gi|288316692|gb|EFC55630.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC 35316] Length = 457 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 123/377 (32%), Positives = 199/377 (52%), Gaps = 9/377 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +++E+GYV T +Q+ + L+ +D++ SAQTG+GKT F L L LL +N Sbjct: 10 PEIL-RSIAEQGYVEPTPIQQKAIPAVLQGRDLMASAQTGTGKTAGFTLPLLE-LLVKNQ 67 Query: 68 RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P+ AL + PTRELA Q+G + + V GGVS++ + L+ G Sbjct: 68 PHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKLRGGVD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL D + + ++ +VLDEAD MLD+GF DI +L P +R+ L+FS Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LA+ + + V +A N + V + + ++ + Sbjct: 188 ATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AAR Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREA 363 G+D+ +L V++ EL + PE+ +HR GRTGRA G + V V + R ERL ++ Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367 Query: 364 NVSVV---WEPAPSVEA 377 + ++ PS++A Sbjct: 368 IPRITTEGYDVDPSIQA 384 >gi|149910882|ref|ZP_01899514.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36] gi|149806036|gb|EDM66019.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36] Length = 397 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 115/331 (34%), Positives = 173/331 (52%), Gaps = 1/331 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 +S +GY T +Q+ + + D+L AQTG+GKT AF L + + N A + Sbjct: 17 VSLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINNF-GRNKIDINAKS 75 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 +L + PTRELA Q+ + ++ G+ V GGV + + G I+V TPGR Sbjct: 76 TRSLILTPTRELASQIMQNIDDYADGLGLKTKVVYGGVGRQNQVDSIALGLDILVATPGR 135 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D I+ +N L+ VLDEAD MLD+GF D++ I+ PK R+ L+FSAT+ I Sbjct: 136 LLDLIKTDDINFKALEVFVLDEADTMLDMGFFKDVQRIISKLPKNRQTLLFSATMPAEIE 195 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 LA D ++ I +E I+ + S++ ++NIL K ++FC T+ Sbjct: 196 ILADAILTDPTKIQITAETVTIERINQSVYHLEKSNKVPLLLNILEKSHYKKVLIFCKTK 255 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 + L E +L +Q R ALQ +D V +ATDVAARGID+ ++ Sbjct: 256 PGADIIVEALEEASITAASLHSGKTQAVREEALQNFKDSNLSVLVATDVAARGIDVDNIT 315 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ L +P N +HR GRT RAG+ G+++ Sbjct: 316 LVINYNLPEDPRNYIHRIGRTARAGKSGIAI 346 >gi|146293591|ref|YP_001184015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella putrefaciens CN-32] gi|145565281|gb|ABP76216.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 427 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 183/338 (54%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E YV+ T VQ A + L +DVL A TGSGKT AF + L L+ + Sbjct: 24 LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVDAKTEDKTGAY 83 Query: 75 PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA QV L K +V A GGVSV+ + + L++GA ++V Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRSGADVLVA 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ + A+VLDEAD ML LGF +++ +LD+ P K++ L+FSAT Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPVKKQTLLFSATFP 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L + + + SE Q S I R + V + + ++++ H A++F Sbjct: 202 EEVRELTAKLLNNPLEYQLQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 S + + + + L++ G+ +Q R+ L ++G V IATD+AARGID+ Sbjct: 260 VSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L +VI+ +L +P + +HR GR+GRAG G++V +I Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357 >gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3] gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3] Length = 444 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 121/371 (32%), Positives = 198/371 (53%), Gaps = 9/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ ++GY T +Q+ + L+ D+L AQTG+GKT F L L L ++ S Sbjct: 15 AVEKQGYDEATPIQQKAIPLVLQGHDLLAGAQTGTGKTAGFTLPLLQRLQSKYQDVQ-KS 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + AV GGVS++ +++ L G IVV TPG Sbjct: 74 FPKVLVLTPTRELAAQVHESVRDYGRYLPFRSAVIFGGVSINPQKQKLIKGVDIVVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ + +++S ++ +VLDEAD MLD+GF DI ++ PKKR+ L+FSAT S I Sbjct: 134 RLLDHVQQRSIDLSRIEILVLDEADRMLDMGFIHDIRRVMKVIPKKRQTLLFSATFSSEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + + ++ + +N + + V + + + + + ++F T Sbjct: 194 KKLASEFLEQPEQIQVTPQNTATTLVSQLVYPVDKNRKRELLSQQIGEGNWQQVLIFTRT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + ++ + L + A+ G SQ R+ AL + G R +ATD+AARGID+ L Sbjct: 254 KHGANKLAEQLDKDGISAAAIHGNKSQGARTRALGDFKAGTIRALVATDIAARGIDIDKL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVWE 370 V++ EL + PE+ +HR GRT RAG++G ++ ++ + R E+L + ++ V+ Sbjct: 314 PHVVNFELPNVPEDYIHRIGRTARAGQQGHAISLVCVDELKLLRDIEKLLGK-DIEKVYL 372 Query: 371 PA----PSVEA 377 P PS++A Sbjct: 373 PGFEVDPSIKA 383 >gi|85713494|ref|ZP_01044484.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] gi|85699398|gb|EAQ37265.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A] Length = 479 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 179/338 (52%), Gaps = 1/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+E Y+ T +Q + L +D++ AQTG+GKT +F L + LL + Sbjct: 19 ISRALAEENYLTPTPIQAQTIPIALTGRDIVGIAQTGTGKTASFALPILHRLLQNRIKPQ 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P S + L ++PTREL+ Q+ + A+ IGGV + R+ R + +G ++V Sbjct: 79 PKSCRV-LVLSPTRELSGQILDNFNAYGRHLRLTSALAIGGVPMGRQVRSVMHGVDVMVA 137 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ GL + ++ +VLDEAD MLD+GF DI ++ P KR+ L+FSAT+ Sbjct: 138 TPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVIAKLPVKRQTLLFSATMP 197 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA +D RV + I R + V + + + +L+ A++F Sbjct: 198 KDIAELANQMLRDPARVAVTPVASTVDRIAQRIIQVDHASKPAHLAQLLKQEPVNRALIF 257 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K LA+ + A+ G SQ R L R G R +ATD+AARGID+ Sbjct: 258 TRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAAFRTGEIRTLVATDIAARGIDV 317 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V++ +L + PE +HR GRT RAG +G ++ ++ Sbjct: 318 DGISHVVNFDLPNVPETYVHRIGRTARAGTEGAAISLV 355 >gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510] gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510] Length = 512 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 116/332 (34%), Positives = 175/332 (52%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T +Q + L +DVL AQTG+GKT AF L + L R + A Sbjct: 23 AVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPILQRLFQNKKRVA-AK 81 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +P L + PTRELA+Q+G + V GGV + + G +++ TPG Sbjct: 82 SPRVLILTPTRELALQIGDSFTTYGRHLPIRRTVIHGGVGQSPQVAAIARGVEVLIATPG 141 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + +N+ ++ VLDEAD MLD+GF D+ ++ PK+R+ L+FSAT+ A+ Sbjct: 142 RLLDLMAQNHVNLGAIEVFVLDEADRMLDMGFIRDVRKVVAVLPKERQTLLFSATMPDAV 201 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + DA R+ + ++ I+ R + V D+ + ++L IVF T Sbjct: 202 VDLANSILTDAERIEVTPQSTTVERINQRVLFVERGDKRRLLADLLEDEAMARTIVFART 261 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R L + A+ G+ SQ R AL+ R+G R +ATD+AARGID+ + Sbjct: 262 KHGADRIADHLKKAGITADAIHGDKSQSARVRALESFRNGELRALVATDIAARGIDIDGI 321 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VI+ +L + PE+ +HR GRT RAG G +V Sbjct: 322 SHVINFDLPNEPESYVHRIGRTARAGTDGSAV 353 >gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7] gi|89517223|gb|EAS19880.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7] Length = 425 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 181/339 (53%), Gaps = 15/339 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL ++GY N T +Q + L+ KD+L AQTG+GKT AF + + L S Sbjct: 15 ALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPILQHLYN--------S 66 Query: 74 AP-------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 AP AL + PTRELA+Q+ + T + V GGV ++ L++G Sbjct: 67 APPKGRRSIKALVVTPTRELAIQIDENFKAYAKYTDIRNTVIYGGVKQAQQVNRLKSGID 126 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL D I + + H++ VLDEAD+MLD+GF DI+ +L P +R+ L FS Sbjct: 127 VLVATPGRLLDLINQGFITLKHIEYFVLDEADQMLDMGFIHDIKKLLKLLPHERQSLFFS 186 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I L++ D RV IA E ++ + V ++ ++ +L + Sbjct: 187 ATMPKTIVELSRQILGDFERVTIAPEKTTAEKVEQQIYHVNKKNKTKLLIELLETKLLDS 246 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ ++ K L + A+ G SQ R AL ++G+ + +ATD+AAR Sbjct: 247 TLVFSRTKHGANKIVKDLEKAGIGSAAIHGNKSQAARQRALGAFKEGKIQTLVATDIAAR 306 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 GID+ +L V++ +L + E+ +HR GRTGRAG G++V Sbjct: 307 GIDIDELSYVVNYDLPNVAESYVHRIGRTGRAGASGLAV 345 >gi|170718552|ref|YP_001783396.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 2336] gi|189040032|sp|B0UUZ9|RHLB_HAES2 RecName: Full=ATP-dependent RNA helicase rhlB gi|168826681|gb|ACA32052.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336] Length = 419 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 192/341 (56%), Gaps = 7/341 (2%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 +++ +A+ E+G+ T +Q L L+ +D+ AQTG+GKT+AF A LL +N+ Sbjct: 18 RIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNN- 76 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + + P AL +APTREL VQ+ + +L TG+ + GG ++ + + G I+ Sbjct: 77 INSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDRGIDIL 136 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFS 186 +GT GR+ D+++ + + +++ VVLDEAD M DLGF DI ++L P++R ++FS Sbjct: 137 IGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQRLTMLFS 196 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244 AT+S + LA + D V I E Q + R L S++D ++ +L Sbjct: 197 ATLSYKVRELAFEHMNDPQYVEI--EPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWP 254 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F +T+ L+ +V L+G++ Q++R + L+ DG V +ATDVA Sbjct: 255 ERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLDVLVATDVA 314 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ +PD+ V + +L + E+ +HR GRTGRAG G+S+ Sbjct: 315 ARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISI 355 >gi|224067972|ref|XP_002302625.1| predicted protein [Populus trichocarpa] gi|222844351|gb|EEE81898.1| predicted protein [Populus trichocarpa] Length = 758 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/391 (33%), Positives = 202/391 (51%), Gaps = 21/391 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFS 70 + ++ GY +T VQ A L L+ KDVL A+TG+GKTVAF L ++ +DR Sbjct: 303 KGINHAGYEKMTVVQAATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPHDRDQ 362 Query: 71 PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIV 128 L L + PTRELA Q E + L + V V IGGV + E++ +Q N I+ Sbjct: 363 KRPPILVLVVCPTRELATQAATEAKVLLKYHPAIGVQVVIGGVRIALEQKSMQANLCQIL 422 Query: 129 VGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 V TPGRL DHI G + +K +VLDEAD +LD+GFR DIE I+ + PK+R+ LMF Sbjct: 423 VATPGRLKDHIENTAGFATRLMGVKVLVLDEADRLLDMGFRKDIEKIIAAIPKQRQTLMF 482 Query: 186 SATISPAITTLAKN-YQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYH 242 SAT+ + + + ++D +N E + HS + V+ L + + IL+ H Sbjct: 483 SATVPEEVRQICHSALKRDHEFINTVQEGAEDTHSKVRQMHVVAPLDKQFPFLYAILKDH 542 Query: 243 GAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 A + IVFC+T ++L E + + +Q R+ R ++ + Sbjct: 543 MADDPDYKVIVFCTTARVTGLVARLLGELNLNIREIHSRKAQTYRTRVSDEFRKSKSLIL 602 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 + +DV+ARG+D PD+ LVI L ++ E +HR GRTGR G++G + ++ E Sbjct: 603 VTSDVSARGVDYPDVTLVIQVGLPASREQYIHRLGRTGRKGKEGEGILLLAP-----WEE 657 Query: 359 LFREA--NVSVVWEPAPSVEAIRERDAQRIL 387 F ++ + P PS++ ++ +R L Sbjct: 658 FFLSTVKDLPITKAPVPSIDPDTKKKMERAL 688 >gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3] Length = 442 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|301772834|ref|XP_002921834.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III-like [Ailuropoda melanoleuca] Length = 417 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 63 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 116 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 117 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 176 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 177 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 236 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 237 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 296 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 297 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 356 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 357 NYDLPNNRELYIHRIGRSGRYGRKGVAI 384 >gi|262403377|ref|ZP_06079937.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586] gi|262350876|gb|EEZ00010.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586] Length = 464 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 180/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + LLA+ + Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A+ AL + PTRELA Q+ + + AV GGV V+ + + + GA I+V Sbjct: 71 -ANKVRALILTPTRELAAQIQDNVLIYGRHLPLSSAVVFGGVKVNPQMQRMCKGADILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI IL P+KR+ L+FSAT S Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V ++++ N ++ + + +V + + + +VF Sbjct: 190 AEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLAKEGNWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L E A+ G SQ R+ AL + G R+ +ATD+AARGID+ Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347 >gi|295660379|ref|XP_002790746.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis Pb01] gi|226281299|gb|EEH36865.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis Pb01] Length = 408 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 189/340 (55%), Gaps = 14/340 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T+L E Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG +V + R L +G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L ++K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 LVI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374 >gi|26344810|dbj|BAC36054.1| unnamed protein product [Mus musculus] Length = 411 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378 >gi|326566475|gb|EGE16625.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC1] Length = 380 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 11/360 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 +K F+++P + I +A+ + LT +Q IL L +D + AQTG+GKT F + + Sbjct: 6 VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65 Query: 59 ASTLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSV 114 +LL + D P AL +APTRELA Q+ + L + + +CI GG Sbjct: 66 IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCREL-TRFSQLYNLCITGGSDF 124 Query: 115 HRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 ++ L I++GTPGR+ D + L + ++ VLDEAD MLD+GF DI+ I+ Sbjct: 125 DKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIV 184 Query: 174 DSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 P +R+ L+FSAT + + LA + V IA E++ + ID + LV ++ Sbjct: 185 RHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREK 244 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 +A+ IL K I+F + + V R L H +V LSG+++QQ+R LQ + Sbjct: 245 TSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRERYLQRFK 303 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 DG V +ATDVA RGI + D+ VI+ L P++ +HR GRTGRAG G+S+ + +N Sbjct: 304 DGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEN 363 >gi|226366440|ref|YP_002784223.1| ATP-dependent RNA helicase [Rhodococcus opacus B4] gi|226244930|dbj|BAH55278.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4] Length = 645 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 200/391 (51%), Gaps = 20/391 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLA 64 +P + +AL+ R + + S +A+ PD L +VL AQTGSGKT+AFGL + + L Sbjct: 38 GLPAPLVQALA-RNSITVPSPIQALSVPDALAGTNVLGRAQTGSGKTLAFGLPMLARLAR 96 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 DR + A P AL + PTRELA QV L G+ V +GG ++ L+ G Sbjct: 97 HEDRPA-AKRPRALVLVPTRELAFQVVDSLNSYAGAMGLTVRPAVGGTPFTKQVDQLRRG 155 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I+V TPGRL DH+R + ++ LDEAD+M D+GF ++ IL +P + L+ Sbjct: 156 VDILVATPGRLGDHLRQGTCILDSVEITALDEADQMADMGFLPEVRSILGETPADGQRLL 215 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ + +L + + D V+ + +++ +LV +DN + I G Sbjct: 216 FSATLDREVQSLVRQFLPDHVQHSTEDGRASVDTMEHYVLLVDRGQKDNVLAEIGAREG- 274 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F T+ T L AL G +Q +R+ L+ ++GR V +ATDVA Sbjct: 275 -RTIMFARTKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLERFKNGRTPVLVATDVA 333 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGI + ++LV+H + ++ ++ LHR+GRT RAG KG V ++ N +R RL A Sbjct: 334 ARGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRTFRRLTGMAG 393 Query: 365 V---------------SVVWEPAPSVEAIRE 380 V S+ APS E +R+ Sbjct: 394 VDATAVPVTPGSEKLASITGAKAPSGEPVRD 424 >gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia R551-3] Length = 471 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 122/341 (35%), Positives = 190/341 (55%), Gaps = 4/341 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72 AL+E+GY T +Q+ + L +D+L AQTG+GKT AFGL L L A + + Sbjct: 15 ALAEQGYETPTPIQQQAIPLVLAGRDLLAGAQTGTGKTAAFGLPLLQHLGTASQEVRTGP 74 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131 P AL +APTRELA QV L Y+K + + CI GGV + + L+ G ++V Sbjct: 75 RKPRALILAPTRELATQVHDSLRG-YSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190 PGRL DH+ + +++S ++ +VLDEAD MLD+GF I+ IL PK+ R+ L+FSAT Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFE 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + ++ ++ + +N I +R V + + ++++L + +VF Sbjct: 194 DNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDGGRKRDLLLHLLAQDSREQTLVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + L + + A+ G SQ +R AL + GR V +ATD+AARGID+ Sbjct: 254 ARTKHGSDKLAAFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGIDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +L VI+ +L E+ +HR GRTGR G G ++ ++ Q+ Sbjct: 314 NELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQD 354 >gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys] Length = 783 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L +Q + KD++ A+TG+GKT +F + L Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E P L +APTRELA QV ++ + K + VA GG + + Sbjct: 248 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DHI+ L+++ LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ + R Sbjct: 366 EDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + I+FC T+ ++ A +L G++ Q++R L+ R Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 484 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LVI + + E+ +HRSGRTGRAGR G+ + Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 583 >gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718] gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718] Length = 454 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|251790108|ref|YP_003004829.1| DEAD/DEAH box helicase domain-containing protein [Dickeya zeae Ech1591] gi|247538729|gb|ACT07350.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591] Length = 455 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 189/371 (50%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T VQ + L +D++ SAQTG+GKT F L L LL E + Sbjct: 15 AVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ-LLNERPVLAKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G + + V GGVS++ + L+ G I++ TP Sbjct: 74 RPVRALILTPTRELAAQIGENVLAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILIATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S + +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLEHQNAVDLSQVDILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V + N + V + + +++ H + +VF Sbjct: 194 IKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLIGKHDWRQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL +DG RV +ATD+AARG+D+ Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + + Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIERLLKREIPRIAI 373 Query: 369 --WEPAPSVEA 377 +EP P+++A Sbjct: 374 PGYEPDPTIKA 384 >gi|17507121|ref|NP_491703.1| hypothetical protein F33D11.10 [Caenorhabditis elegans] gi|2773184|gb|AAB96704.1| Hypothetical protein F33D11.10 [Caenorhabditis elegans] Length = 399 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 111/337 (32%), Positives = 189/337 (56%), Gaps = 13/337 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + L+ +DV+ AQ+G+GKT F +++ +L + AL Sbjct: 45 GFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ------VRETQAL 98 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 99 ILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 158 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ + I P ++++ SAT+ I + Sbjct: 159 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 218 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254 + D +R+ + + I + VA+ DR+ + ++++ A++FC+TR Sbjct: 219 KFMTDPIRILVKRDELTLEGI--KQFFVAV-DREEWKFDTLIDLYDTLTITQAVLFCNTR 275 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ G++ Q++R ++ R G RV I+TDV ARG+D+P + Sbjct: 276 RKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVS 335 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 LVI+ +L +N E +HR GR+GR GRKG+++ + Q+ Sbjct: 336 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 372 >gi|20149756|ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus] gi|42560197|sp|Q91VC3|IF4A3_MOUSE RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|14198152|gb|AAH08132.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus musculus] gi|15277517|gb|AAH12862.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus musculus] gi|74138617|dbj|BAE27130.1| unnamed protein product [Mus musculus] gi|74142343|dbj|BAE31931.1| unnamed protein product [Mus musculus] gi|74146845|dbj|BAE41387.1| unnamed protein product [Mus musculus] gi|74186129|dbj|BAE34233.1| unnamed protein product [Mus musculus] gi|74188979|dbj|BAE39256.1| unnamed protein product [Mus musculus] gi|74212198|dbj|BAE40258.1| unnamed protein product [Mus musculus] gi|74214032|dbj|BAE29433.1| unnamed protein product [Mus musculus] gi|74220630|dbj|BAE31525.1| unnamed protein product [Mus musculus] gi|122889626|emb|CAM14996.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus musculus] gi|123264877|emb|CAM18884.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus musculus] gi|148702746|gb|EDL34693.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus] Length = 411 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378 >gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206] gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299] gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206] gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299] Length = 453 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|282891599|ref|ZP_06300090.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498567|gb|EFB40895.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 399 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 111/362 (30%), Positives = 194/362 (53%), Gaps = 9/362 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I +AL + + + +Q+A + L++KD++ A+TGSGKT A + + DR Sbjct: 12 TILKALEKLKFSEPSPIQKAAIPLILQKKDLIALAKTGSGKTAACAIPIC-------DRV 64 Query: 70 SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 S + AL + PTRELA+Q E + + A+ GV GG ++ L++G ++ Sbjct: 65 DVNSNSVQALIVVPTRELALQYATETQKIGAEKGVKTFALFGGEDAAMQQSKLKHGVQVL 124 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + + +++SH++ ++LDEADEML +GF DD+EFI+ + + L+FSAT Sbjct: 125 VVTPGRLIDFVYSRQIDLSHVETLILDEADEMLSMGFYDDLEFIIQCLVHEHQTLLFSAT 184 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I +AK + + + V++ E+ I++ + ++++ ++ +++ AI Sbjct: 185 MPKQIRDIAKKHMQSPLEVSLIGEDATPDMIEHHFLYCRYHEKEHNLIELIKTQTPTKAI 244 Query: 249 VFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +FCS+R + T VL + L + + L LSQ RS R + ++ +ATDV +RG Sbjct: 245 IFCSSRQECEKVTYVLRKQLHETIDFLHAGLSQDIRSAVTNKFRTNKIQLLVATDVVSRG 304 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 +D + V L+ + + +HRSGRTGR + G + ++ Q R RL + Sbjct: 305 LDFSSVSHVFIYHLADDLDLYIHRSGRTGRYEKAGTVITLVTQRELRTLNRLLKVLKKEP 364 Query: 368 VW 369 W Sbjct: 365 NW 366 >gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15] Length = 453 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 193/370 (52%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFRE--ANVSVV 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ ++++ Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIL 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum] Length = 472 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 196/358 (54%), Gaps = 19/358 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPA 72 ALS+ + + T +Q+ + P + +DVL AQTGSGKT F L +L A+ +R Sbjct: 15 ALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSLHRNKRAQGNR---- 70 Query: 73 SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + L ++PTRELA Q+ R ++L ++T + +GG + R+ L+ +V Sbjct: 71 TRHQILVLSPTRELAGQIERSAREYGKYLRSRT----VLLVGGTDMRRQIDFLRRPWDLV 126 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL DH++ +N+SH+ VVLDEAD MLD+GF D+E IL + +R+ L+F+AT Sbjct: 127 IATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQTLLFTAT 186 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-- 246 + I L K YQKD V + + + + ID V ++ + ++ + Sbjct: 187 LPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILTEPQTTEG 246 Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ L F AL G+ SQ +R+ L R G+ R+ +ATDVAA Sbjct: 247 QTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRILVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLF 360 RG+D+ + VI+ +L +PE+ +HR GRTGRAGR G ++ F P +N+ R ERL Sbjct: 307 RGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRDIERLL 364 >gi|294877852|ref|XP_002768159.1| eukaryotic translation initiation factor, putative [Perkinsus marinus ATCC 50983] gi|239870356|gb|EER00877.1| eukaryotic translation initiation factor, putative [Perkinsus marinus ATCC 50983] Length = 395 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 185/342 (54%), Gaps = 13/342 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPA 72 + + G+ ++VQ+ + P ++ +DV+V +Q+G+GKT F L AL + E D Sbjct: 36 GIYQYGFERPSAVQQRAILPIVKGRDVVVQSQSGTGKTCVFALGALQTVKTTERD----- 90 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L ++PTRELA Q + L V V C+GG + + R L+ G HIV GTP Sbjct: 91 --PQVLILSPTRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEAGVHIVSGTP 148 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ I + L+ HLK +VLDEADEMLD GF++ + I P + ++ SAT+ Sbjct: 149 GRVYHMISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLPPSTQCVLVSATMPNE 208 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIV 249 I + N+ + RV + + I + VA+ + + ++ A++ Sbjct: 209 ILEMTNNFMNNPFRVLVKRDELTLEGI--KQFFVAVEKEQWKFDTLCDLYDTLTITQAVI 266 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V T + E F VV++ G++ Q+ER +Q R G+ARV I TD+ RG+D Sbjct: 267 FCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVLITTDIWGRGLD 326 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 + + LVI +L +N E +HR GR+GR GRKG+++ + ++ Sbjct: 327 VQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKED 368 >gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65] gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65] Length = 449 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 117/363 (32%), Positives = 200/363 (55%), Gaps = 10/363 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ Q I + + G+ T VQ+ + L+++D++V A+TGSGKT AF + + LL Sbjct: 6 SLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQHLLTH 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +P S AL + PTRELA Q+ ++ + L TG+ + GG + + Sbjct: 66 K---APNSGTRALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQEFKFQAALFRKNP 122 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 I++ TPGRL DH++ K + ++ +LDEAD MLD+GF +D+ I + S K + L Sbjct: 123 EIIIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLDMGFEEDVLTIANACSGKAKPQTL 182 Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRY 241 +FSAT+ + + K Q D + + S +HS+I+ +L I+ +L Sbjct: 183 LFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRILTWLLSN 242 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + AI+F +T+ + L+ H +V L G+++Q ER++ + MR+GR +V +AT Sbjct: 243 EEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFKVLVAT 302 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAER 358 DVAARG+D+ ++LVI+ +++ + ++ +HR GRTGRA G ++ +I N++ ER Sbjct: 303 DVAARGLDIQSIDLVINFDMARSGDDYVHRIGRTGRAEASGSAISLIDHTEWNLKAAIER 362 Query: 359 LFR 361 R Sbjct: 363 YLR 365 >gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073] gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536] gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11] gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972] gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1] gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1] gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1] gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1] gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101] gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605] gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073] gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536] gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11] gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82] gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972] gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1] gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1] gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1] gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1] gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101] gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972] gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG 857C] gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1] gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327] gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2] gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86] gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605] Length = 453 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|317492534|ref|ZP_07950962.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919526|gb|EFV40857.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 465 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 193/371 (52%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q + L+ +D++ SAQTG+GKT F L L +L+++ + + Sbjct: 15 AVEEQGYREPTPIQSQAIPVVLQRRDLMASAQTGTGKTAGFTLPLLQ-ILSQDTQPAKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TP Sbjct: 74 RPVRALILTPTRELAAQIGENVRDYSKYLNLRSLVVFGGVSINPQMMKLRGGVDVLVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 134 GRLLDLEHQHAVDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V +A N + V + + ++ H + +VF Sbjct: 194 IKELANKLLTNPASVEVARRNTASEQVAQSVHFVDKRRKRELLSQLIGTHNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ + + L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 254 TKYGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGSIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + + Sbjct: 314 LPHVVNFELPNVPEDYVHRIGRTGRAECTGEALSLVCVDEHKLLRDIERLLKREIPRIAI 373 Query: 369 --WEPAPSVEA 377 +EP PS++A Sbjct: 374 EGYEPDPSIKA 384 >gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957] gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957] Length = 560 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 116/347 (33%), Positives = 190/347 (54%), Gaps = 5/347 (1%) Query: 3 IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +FE++ + + ++E GYV+ T +QE + L +DV+ AQTG+GKT +F L + Sbjct: 106 VFEDLGLSEALLRGVAEAGYVHPTPIQEQAIPVVLMGRDVMGCAQTGTGKTASFVLPMMD 165 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L + A P +L + PTRELA+QV + A+ IGG S+ +R Sbjct: 166 ILAGSRAK---ARMPRSLILEPTRELALQVAENFVKYGTHMKLNHALLIGGESMSDQRDV 222 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L G +++ TPGRL D + ++ K +V+DEAD MLD+GF D+E I+ P R Sbjct: 223 LDKGVDVLIATPGRLLDLFERGRVMLADCKVLVIDEADRMLDMGFIPDVERIVSLLPPLR 282 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L FSAT++P I LA + ++ +++++ + I V D+ A+ ++R Sbjct: 283 QTLFFSATMAPEIRKLADAFLQNPKTISVSAPASVATTITAGLAFVQPEDKRRALRRLIR 342 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 +NA++FC+ + V K L++H F+ AL G+L Q R L+ + G ++ + Sbjct: 343 SQDVQNALIFCNRKRDVDILHKSLSKHGFKAGALHGDLPQSVRFATLEKFKAGELQLLVC 402 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 +DVAARGID+ L V + ++ E+ +HR GRTGRAGR+G + + Sbjct: 403 SDVAARGIDIGGLSHVYNFDVPFRDEDYVHRIGRTGRAGREGHAYTI 449 >gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39] gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39] Length = 453 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str. E2348/69] gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75] gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69] gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75] Length = 453 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQYLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|118469993|ref|YP_885922.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155] gi|118171280|gb|ABK72176.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155] Length = 460 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 182/359 (50%), Gaps = 3/359 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + L+ G +Q A L L +DVL +TGSGKT AF L L + L A + Sbjct: 12 LPAELVSTLAANGVTTPFPIQAATLPDSLNGRDVLGRGRTGSGKTYAFLLPLVARL-ATS 70 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 A P A+ +APTREL Q+ L L A TG+ GGV + L+ G Sbjct: 71 GTPRDAGKPRAVILAPTRELVTQIEASLAPLAAATGLRTVNIFGGVGAGPQIAALRRGVD 130 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ PGRL DH++ + ++S ++ +LDEAD M DLGF ++ +LD +PK + L+FS Sbjct: 131 IVIACPGRLEDHVQSRHADLSSVEVTILDEADHMADLGFLPGVKRLLDRTPKHCQRLLFS 190 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ + L K Y D V ++ S S + + + V + R N + ++ G Sbjct: 191 ATLDAGVDVLVKRYLHDPVVHSVDSAQSPVSAMVHHVLHVDNAARINVVADLAAAPG--R 248 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 IVF T+ T+ L V L G LSQ R+ L DG A V +ATD+AAR Sbjct: 249 TIVFARTKHGAKNLTRQLNSRGISAVELHGNLSQNARTRNLTAFSDGSATVMVATDIAAR 308 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 GI + D+ LV+HA+ + LHRSGRT RAG +G V ++ L R+A V Sbjct: 309 GIHVDDVSLVVHADPPVEHKAYLHRSGRTARAGNEGTVVTLMLDAQVHDVRNLTRKAGV 367 >gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Pichia angusta DL-1] Length = 470 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 111/347 (31%), Positives = 195/347 (56%), Gaps = 19/347 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ + + T +Q L L+ +D++ AQTGSGKT AF + + L + Sbjct: 78 ILDAIEKLNFSTPTPIQAQSLPHSLQGRDIIGIAQTGSGKTAAFAIPILQALWEAQTPY- 136 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A +APTRELA Q+ + L G+ + +GG+ + + ++L H++V Sbjct: 137 -----FACVLAPTRELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMRKPHVIVA 191 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL+ P++R+ +FSAT+ Sbjct: 192 TPGRLMDHLENTKGFSLKALKYLVMDEADRLLDMEFGPVLDRILNIIPRERKTYLFSATL 251 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSD--RDNAIVNILRYHGAKN 246 + + L + D V++ + N ++S +D L+ + D ++ ++ +L + K+ Sbjct: 252 TSKVEKLQRASLIDPVKIAV---NDKYSTVDTLIQTLMVVPDGYKNTYLIYLLNEYVGKS 308 Query: 247 AIVF---CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVF C+ V+ ++L F + L G+L+Q +R AL + G ++ +ATDV Sbjct: 309 VIVFARTCAHAQKVALLARILG---FSAIPLHGQLTQAQRLGALNKFKSGDKQILVATDV 365 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 AARG+D+P ++LV++ ++ ++ + +HR GRT RAGR G SV ++ Q Sbjct: 366 AARGLDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQ 412 >gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14] gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14] Length = 660 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 232/448 (51%), Gaps = 32/448 (7%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + G NL +Q + + +++ A+TG GKT+AF L + LL + P A Sbjct: 110 LKKHGIANLFPIQAMTFDKIMDGNNLIGRARTGMGKTLAFALPVVEKLLQSKIKPVPNRA 169 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133 P + + PTRELA QV E E L + VCI GG ++ ++G IV+GT G Sbjct: 170 PRVICVTPTRELARQVTTEFEKL---DTTLNTVCIYGGTPYQQQNAAFRSGTDIVIGTTG 226 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK---KRRMLMFSATIS 190 R+ DHI L ++ + ++LDEAD ML++GFR+DI+ I D++ K K ++L+FSATI Sbjct: 227 RIMDHIDRGNLRFANCEFLILDEADTMLEMGFREDIQRIFDATQKSGVKPQILLFSATIP 286 Query: 191 PAITTLAKNY-QKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 + +A Y K VN+ S+++ D+ + A+ R + ++L +G +NA Sbjct: 287 KWLHEIADRYMDKKYEFVNLVQDSDDQASLDVQHVAIPCHWQSRPTLLASLLGVYGKQNA 346 Query: 248 --IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ + + V E L G+++Q +R ++ RDG+ R+ IATDVAA Sbjct: 347 RTIIFAETKKDCNELS-VHPEIKQDCHVLHGDIAQAQRETTMKAFRDGQIRLLIATDVAA 405 Query: 306 RGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 RG+D+ +++LVI++E ++ + +HRSGRTGRAG+KG+ + + + + + Sbjct: 406 RGLDM-NVDLVINSEPPRKASGYADVDTYVHRSGRTGRAGKKGVCITLYTPRQKELLDLI 464 Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ-----DPLFLDSIQGDEKKMVDVLLAKHDPE 414 R+ + PS E + + A++ + DP+ + + + + L H+P+ Sbjct: 465 ERKIGNKFIMRDQPSQEELIKVSAEKAFKSMDQVDPVMIAIFE----EKAEEYLENHEPK 520 Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSG 442 K A L P P SL+SG Sbjct: 521 KALAVALACITGHATPPR---PHSLMSG 545 >gi|255635856|gb|ACU18275.1| unknown [Glycine max] Length = 413 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/357 (33%), Positives = 192/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YSVTECQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ ++ + + N V+ E PS Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDEKMLFDIQKFYN--VIIEELPS 407 >gi|298345284|ref|YP_003717971.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063] gi|315655703|ref|ZP_07908601.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333] gi|298235345|gb|ADI66477.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063] gi|315489767|gb|EFU79394.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333] Length = 525 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 14/355 (3%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ AL ++G ++ +Q L L +D++ A+TG+GKT+ F + + ++ Sbjct: 31 FDVEPEIVA-ALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILHDII 89 Query: 64 AENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 D + P AL I PTRELA QV E+ + GGV + Sbjct: 90 GPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFDSQIE 149 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ G +VVGTPGRL D + L + ++ +V+DEADEMLD+GF D+E ++ P Sbjct: 150 ALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQIPPH 209 Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDN 233 R ++FSAT+ + LA+ Y Q +R +++ RQ + YR V ++ Sbjct: 210 RHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYR---VHSLNKTE 266 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 I IL+ I+F T+ + R + LAE F A+ G+L Q R AL+ R G Sbjct: 267 VIARILQARNRGLTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHG 326 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V +ATDVAARGID+ D+ VI+ E + + +HR GRT RAG KG ++ I Sbjct: 327 KVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFI 381 >gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5] gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5] Length = 454 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|315619798|gb|EFV00317.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431] Length = 449 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 10 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 69 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 70 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 129 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 130 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 189 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 190 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 249 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 250 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 309 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 310 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 369 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 370 GYEPDPSIKA 379 >gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1] gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1] Length = 446 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|326575788|gb|EGE25711.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis CO72] Length = 391 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 11/360 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 +K F+++P + I +A+ + LT +Q IL L +D + AQTG+GKT F + + Sbjct: 6 VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65 Query: 59 ASTLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSV 114 +LL + D P AL +APTRELA Q+ + L + + +CI GG Sbjct: 66 IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCREL-TRFSQLYNLCITGGSDF 124 Query: 115 HRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 ++ L I++GTPGR+ D + L + ++ VLDEAD MLD+GF DI+ I+ Sbjct: 125 DKQLEQLHKRPLDILIGTPGRIIDWVDKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIV 184 Query: 174 DSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 P +R+ L+FSAT + + LA + V IA E++ + ID + LV ++ Sbjct: 185 RHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREK 244 Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 +A+ IL K I+F + + V R L H +V LSG+++QQ+R LQ + Sbjct: 245 TSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRERYLQRFK 303 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 DG V +ATDVA RGI + D+ VI+ L P++ +HR GRTGRAG G+S+ + +N Sbjct: 304 DGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEN 363 >gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3] Length = 439 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] Length = 432 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 122/343 (35%), Positives = 188/343 (54%), Gaps = 13/343 (3%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--- 65 Q + +AL+E GY LT VQ+ + R D+L AQTG+GKT AF L + L+ + Sbjct: 10 QDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPIIQKLIEKPKS 69 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 RF+ AL +APTRELA Q+ + T V GG + + + L+ G Sbjct: 70 KSRFNVR----ALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSSQEKRLEQGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL +H+ +++++L+ +V DEAD MLD+GF I IL+ K + ++F Sbjct: 126 DILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILEDIRTKPQTMLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT SP + +LA + R+ + EN S D A +V D D + G K Sbjct: 186 SATSSPQMNSLASDILHKPQRITVTPEN---STADTIAHVVYPVDEDRKREMLSELIGKK 242 Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 N +VF + + S ++ K L + V G+ +Q R AL+ ++G+ARV +AT+ Sbjct: 243 NWKQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATE 302 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ +L V++ ++ E+ +HR GRTGRAG+KG ++ Sbjct: 303 VAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAI 345 >gi|74311340|ref|YP_309759.1| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046] gi|73854817|gb|AAZ87524.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046] gi|323165715|gb|EFZ51501.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G] Length = 454 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|145332383|ref|NP_001078148.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor [Arabidopsis thaliana] gi|332641919|gb|AEE75440.1| translational initiation factor 4A-1 [Arabidopsis thaliana] Length = 402 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D FS AL Sbjct: 48 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 101 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 102 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 161 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 162 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 221 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 222 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 281 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 282 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 341 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV V E PS Sbjct: 342 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 396 >gi|146104251|ref|XP_001469775.1| DEAD box RNA helicase [Leishmania infantum] gi|134074145|emb|CAM72887.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5] gi|322503545|emb|CBZ38631.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 527 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 126/390 (32%), Positives = 209/390 (53%), Gaps = 12/390 (3%) Query: 2 KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F+++ Q + A ++ G+ + T +Q + + +D++ AQTGSGKT A+ L L Sbjct: 53 KTFQDLGLCQELCTACADAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLV 112 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + LLA+ R +P + L + PTRELA QV + L G+ VA +GG + + Sbjct: 113 NWLLAQ--RKTPYLS--VLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQAC 168 Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +L H+VVGTPGR+ DH+ KG + L A+VLDEAD+MLD+ + +I+ IL+ P+ Sbjct: 169 ELSKRPHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQ 228 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 RR ++FSAT+S I L K +D V + + +N + + + + + Sbjct: 229 NRRTMLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + ++FC + A V + T L + + L G + Q R+ AL ++G+ R+ Sbjct: 289 LTKETGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRML 348 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 I TDVA RG+D+P ++V++ L + E+ +HR GRT RAG +G +V +I Q ++ Sbjct: 349 ICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQK 408 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ 388 + ++ V V P + E + Q +LQ Sbjct: 409 IEQQTGVKCVEYP-----FLPESEVQLVLQ 433 >gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227] Length = 453 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1] gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1] Length = 453 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520] Length = 454 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSNDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|260854088|ref|YP_003227979.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368] gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368] gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14] Length = 454 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A] gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22] gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171] gi|256021133|ref|ZP_05434998.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9] gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009] gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088] gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7] gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591] gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9] gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli E24377A] gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22] gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171] gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009] gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088] gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7] gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B] gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010] gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1357] gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120] gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591] gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9] Length = 454 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1] gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1] Length = 433 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|195120383|ref|XP_002004708.1| GI20069 [Drosophila mojavensis] gi|193909776|gb|EDW08643.1| GI20069 [Drosophila mojavensis] Length = 521 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 135/392 (34%), Positives = 195/392 (49%), Gaps = 50/392 (12%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + + L++ G +T +QE + P L KD + +A+TGSGKT AF L + L E Sbjct: 18 LAKQLTKLGLKGVTPIQENCIPPILAGKDCIGAAKTGSGKTFAFALPILEKLSEE----- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P S AL + PT ELA Q+ + GV V V GG E + L HIVV Sbjct: 73 PVSH-FALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPHIVVA 131 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 PGRL DH+ G + +LK +V+DEAD ML+ F + + I PK R+ L FSAT+ Sbjct: 132 MPGRLADHLTGCDTFSFDNLKFLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFFSATM 191 Query: 190 SPAITTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILR 240 K++ K++ I+ E Q SD+ + R +L A DRD ++ LR Sbjct: 192 --------KDFMKESSIFPISKDLMEWSQESDVATVETLEQRYLLCADYDRDMVLIEALR 243 Query: 241 YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +N ++F +T+ + LA + V L G + Q+ER AL + R Sbjct: 244 KFREENENANVMIFTNTKKYCQLLSMTLASMEIENVCLHGFMRQKERVAALSRFKSNHIR 303 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM-- 352 IATDVAARG+D+P ++LVI+ L P+ +HR GRT RAGRKG+ S+F P+++ Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLEL 363 Query: 353 ------------------QRRAERLFREANVS 366 QR ER+F + NV+ Sbjct: 364 LGAIEAEINCKLTEHPIDQRMVERIFMQVNVT 395 >gi|312131519|ref|YP_003998859.1| dead/deah box helicase domain protein [Leadbetterella byssophila DSM 17132] gi|311908065|gb|ADQ18506.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila DSM 17132] Length = 408 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 118/345 (34%), Positives = 186/345 (53%), Gaps = 8/345 (2%) Query: 4 FEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FEN +P+ I A+++ GY T +Q +L L +D++ AQTG+GKT AF + + Sbjct: 3 FENYRILPE-IKRAIADLGYKKPTDIQYKVLPKVLAGEDIMGIAQTGTGKTAAFAIPVLH 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L +E + + L + PT ELA Q+ + L T + + G + + Sbjct: 62 LLASEKK----SKSLRCLVMVPTHELAQQIADVFKSLAKNTRLKIMALYGSTDQEPQIKA 117 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 LQ G ++V TPGR+ D L++ +K ++LDEAD MLDLGF DI + PK+ Sbjct: 118 LQKGVDVLVTTPGRMFDLQAQGHLSLEDIKFLILDEADRMLDLGFYQDIIDVKKRIPKRH 177 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L FSAT+ I LA + K+A+R+ I+ ++ +ID+ V+V++ D+ + ++ Sbjct: 178 QTLFFSATLDEKIKKLAYSTVKNAIRIQISPDDPVSKNIDHSVVMVSMEDKRFFLERMIT 237 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + + IVF T+ R +A + V L + S ER AL+ + G V IA Sbjct: 238 ENPQQKIIVFVRTKVRAERVAAAMARVNIKTVTLHSDKSHIERKAALESFKKGETWVLIA 297 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDV+ARG+D+P +E VI+ +L EN +HR GRTGR +KG +V Sbjct: 298 TDVSARGVDIPLVEYVINYDLPDVAENYVHRIGRTGRGTQKGKAV 342 >gi|297797303|ref|XP_002866536.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp. lyrata] gi|297312371|gb|EFH42795.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp. lyrata] Length = 588 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 119/366 (32%), Positives = 199/366 (54%), Gaps = 7/366 (1%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 +K+F+ N P I EA+++ G+ T +Q L+ +D++ A+TGSGKT+A+ L Sbjct: 161 VKLFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLP 219 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 A ++ R P+ L +APTRELAVQ+ E ++GV GG + Sbjct: 220 ALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQI 279 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 RDL+ G IV+ TPGRL D + + N+ + +VLDEAD MLD+GF I I+ Sbjct: 280 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 339 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237 R+ L++SAT + +LA+ + +D + I S + + + I+ +V ++ N ++ Sbjct: 340 DRQTLLWSATWPREVESLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 399 Query: 238 ILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +L+ G+K ++F T+ + T+ L + +A+ G+ +Q ER L + GR+ Sbjct: 400 LLKQLMDGSK-ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQPERDRVLAEFKSGRS 458 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 + ATDVAARG+D+ D++ V++ + + E+ +HR GRTGRAG KGM+ + + Sbjct: 459 PIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKF 518 Query: 356 AERLFR 361 A L + Sbjct: 519 ARELIK 524 >gi|260773840|ref|ZP_05882755.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] gi|260610801|gb|EEX36005.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] Length = 420 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/347 (34%), Positives = 180/347 (51%), Gaps = 2/347 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + E+L+ G T +Q + P L DVL AQTG+GKT AFGL L L A Sbjct: 13 IAPTLVESLNALGIETPTEIQIQAIPPVLAGHDVLAGAQTGTGKTAAFGLPLLQRLAASK 72 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 +S + AL + PTRELA QV L + + V V GG S+ +++ L+ GA Sbjct: 73 TDVDVSSKDIRALVLVPTRELAQQVFDSLTAYAKGSELKVVVAYGGTSMSVQKQHLRGGA 132 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGRL DH K L + +++ +VLDEAD MLD+GF DI+ +L + R+ L F Sbjct: 133 DVLIATPGRLLDHAHVKSLYLGNVQTLVLDEADRMLDMGFMPDIQRVLRKLNRARQTLFF 192 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I LA + + V + N + V + + ++ + Sbjct: 193 SATFDQKIKALAYRMMHEPIEVQVTPANTTADTVSQMVYPVDKKRKSELLAYLIGSRNWQ 252 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + L + +++G+ SQ R AL + G+ R IATDVAA Sbjct: 253 QVLVFTKTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKAGKIRALIATDVAA 312 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351 RGID+ LE V++ +L E+ +HR GRTGRAG+ G++V ++ PQ Sbjct: 313 RGIDICQLEQVVNFDLPYKAEDYIHRIGRTGRAGQSGLAVSLMSPQE 359 >gi|225444867|ref|XP_002281219.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297738640|emb|CBI27885.3| unnamed protein product [Vitis vinifera] Length = 413 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R N VV E PS Sbjct: 353 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYN--VVIEELPS 407 >gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89] gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88] gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a] gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA] gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89] gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88] gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a] gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA] gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli IHE3034] gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146] gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263] Length = 453 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|320531823|ref|ZP_08032743.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320135962|gb|EFW27990.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 449 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 122/352 (34%), Positives = 189/352 (53%), Gaps = 5/352 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG+ +Q A L L +DVL +TGSGKT+AF L L L A+ D+ P Sbjct: 25 LDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQRL-AQQDKARPGH- 82 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P+ L +APTRELA+Q+ +E L + V GGVS + + L+ G +VV PGR Sbjct: 83 PIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGR 142 Query: 135 LCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 L D + G+GL ++ ++ VLDEAD M DLGF + IL ++P++ + L+FSAT+ + Sbjct: 143 LLD-LMGQGLVSLDEVEITVLDEADHMADLGFLPGVRRILRATPQRGQRLLFSATLDNGV 201 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 TL K + + ++ ++ + +R +VA + IV L G I+F T Sbjct: 202 DTLVKEFLHNPLQHSVDPSTSPVDAMTHRVWMVADKTAKDGIVRRL-ASGEGQRILFTRT 260 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R + L + V L G +SQ+ R A++ G+ V +ATD+AARGID+ + Sbjct: 261 KHLARRLARKLVQAGIPAVELQGNMSQKARERAMRAFSTGQVHVMVATDIAARGIDVSGV 320 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 ELV+H + + + LHRSGRT RAG G + ++ + + L ++A + Sbjct: 321 ELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVLLKKARI 372 >gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1] gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1] Length = 439 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|330504959|ref|YP_004381828.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] gi|328919245|gb|AEB60076.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas mendocina NK-01] Length = 447 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 179/334 (53%), Gaps = 1/334 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ Y T VQ + L+ +D++ +AQTG+GKT F L L L E + + S Sbjct: 16 LADLDYKTPTPVQSQAIPTVLKGRDLMAAAQTGTGKTAGFALPLLQRLTLEGPQVASNSV 75 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL + PTRELA QV + + + GGVS++ + L+ G ++V TPGR Sbjct: 76 -RALVLTPTRELAEQVLQSFQAYGQHLPLTSYAVYGGVSINPQMMKLRKGVDVLVATPGR 134 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D R + S L+ ++LDEAD MLDLGF +++ + + PKKR+ L+FSAT S AI Sbjct: 135 LLDLYRQNAVKFSQLQTLILDEADRMLDLGFARELDELFSALPKKRQTLLFSATFSDAIR 194 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 +A +D + V ++ N + + V + +++L+ +VF TR Sbjct: 195 QMAGELLRDPLSVEVSPRNAAAKTVKQWLIPVDKKRKSELFLHLLQVKRWGQVLVFAKTR 254 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V + + L ++ G+ Q R AL+ + G ++ +ATDVAARG+D+ DL Sbjct: 255 KGVDQLEQELLAMGVAADSIHGDKPQPSRLRALERFKAGEVQILVATDVAARGLDIDDLP 314 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 LV++ +L N E+ +HR GRTGRAG G ++ ++ Sbjct: 315 LVVNLDLPINAEDYVHRIGRTGRAGSTGEAISLV 348 >gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4] gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4] Length = 510 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 178/337 (52%), Gaps = 1/337 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 Q + AL E GYV T +Q + P + +D+ AQTG+GKT AF L + L + + R Sbjct: 11 QPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLDSR 69 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 +P L ++PTRELA Q+ V GGV++ R+ R + G I+ Sbjct: 70 RAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAPGVDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + + L + ++ +VLDEAD+MLDLGF ++ I+ P KR+ L FSAT Sbjct: 130 VATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA Y + V+V + +D + + + + ++LR + + Sbjct: 190 MPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVL 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ R + L + A+ G SQ +R AL RDG RV +ATD+AARGI Sbjct: 250 VFTRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGI 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ + V++ +L + PE+ +HR GRT RAG +G ++ Sbjct: 310 DVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAI 346 >gi|319899115|ref|YP_004159208.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73] gi|319403079|emb|CBI76634.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73] Length = 416 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 115/331 (34%), Positives = 181/331 (54%), Gaps = 5/331 (1%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L+ DVL AQTGSGKT+AF L + + +L D+ P +A AL + PTRELAVQ+ + Sbjct: 42 LKGHDVLGIAQTGSGKTLAFSLPILNRILTLGDKRHPKTAR-ALILVPTRELAVQIEEAI 100 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 + T + + +GG+S + + + G I++ TPGRL D IR K +++S + VL Sbjct: 101 SAVAKGTHLSTCLILGGMSRLIQIKRMAKGVDILIATPGRLMDLIRSKYIDLSQSRFFVL 160 Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214 DEAD MLD+GF D+ I + KK + +FSAT+ + LA N K +++ + + Sbjct: 161 DEADRMLDMGFISDVRQIANFLHKKCQTALFSATMPKEVNVLADNLLKKPIKIEVVPQGT 220 Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274 +I V+ S++ + + +L + IVF T+ + L + + V + Sbjct: 221 TAVEITQVLYCVSTSEKKSVLSKLLTNPALASVIVFIRTKHGADSVARSLKKTGYSVATI 280 Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334 G SQ R AL+ R+G R+ +ATD+ ARGID+P + VI+ +L N E+ +HR GR Sbjct: 281 HGNKSQNARQCALKDFREGLVRILVATDIVARGIDIPGISHVINYDLPDNAESYVHRIGR 340 Query: 335 TGRAGRKGMSVFVIPQNMQR----RAERLFR 361 TGR G G ++ + + ++R ERL R Sbjct: 341 TGRNGASGDAITLFDEKVERARLSAIERLIR 371 >gi|309786547|ref|ZP_07681170.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae 1617] gi|308925610|gb|EFP71094.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae 1617] Length = 449 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 10 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 69 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 70 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 129 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 130 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 189 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 190 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 249 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 250 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 309 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 310 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 369 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 370 GYEPDPSIKA 379 >gi|75675849|ref|YP_318270.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] gi|74420719|gb|ABA04918.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] Length = 483 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 184/338 (54%), Gaps = 6/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY + T +Q+ + L +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + A + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH GL ++ ++ +V+DEAD MLD+GF DIE I P R+ L F+AT+ I Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK---NAIVF 250 + + + ++ ++ + + V + + + AK NAI+F Sbjct: 192 RRVTDTFLHNPEKIEVSRPATTAATVAQSQVSCSREPHEKRELLRRLLREAKELKNAIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ K L +H F AL G++ Q R+ +L R G + +A+DVAARG+D+ Sbjct: 252 CNRKRDVAIVCKSLQKHGFSAGALHGDMDQSARTASLDQFRKGELPLLVASDVAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P++ V++ ++ +P++ +HR GRTGRAGR G ++ ++ Sbjct: 312 PEVSHVLNFDVPYHPDDYVHRIGRTGRAGRTGTAITIV 349 >gi|301348040|ref|ZP_07228781.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB056] gi|301596797|ref|ZP_07241805.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB059] Length = 344 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 113/338 (33%), Positives = 191/338 (56%), Gaps = 8/338 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63 N+ + +A+ G+ +T +Q+ +L L D + AQTG+GKT AF +++ + LL Sbjct: 9 NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68 Query: 64 -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + RF P AL +APTRELA+Q+ + + L + + + +GGV ++++ L Sbjct: 69 PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 126 Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179 N I+V TPGRL D + K + + ++ +V+DEAD +LD+GF ++ I+ SP+K Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ LMFSAT + + LA+ + + V V I E + ++D++ R +VA D+ + +IL Sbjct: 187 RQTLMFSATFTYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 R ++F + R V R L + ++V LSGE++Q +R L+ + G+ + I Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 ATDVA RGI + + V++ L ++ +HR GRTGR Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGR 344 >gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 605 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 181/343 (52%), Gaps = 1/343 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ E+GY T +Q + L D+L AQTG+GKT AF L + L + Sbjct: 7 NLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRL-TQ 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 PA AL + PTRELA QV L V V GGV ++ + ++ G Sbjct: 66 GGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDRIKRGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + L++S ++ +VLDEAD MLD+GF D++ +L P+ ++ L+F Sbjct: 126 DILVATPGRLLDLQQQGFLDLSKVEILVLDEADRMLDMGFIHDVKKVLALVPRDKQSLLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I LA K+ + + N I V + +++I++ H Sbjct: 186 SATFSDEIRELANTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQEHNWS 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + + L ++ +AL G SQ R+ AL + G R +ATD+AA Sbjct: 246 QVLVFTRTKFGANNVAEFLTKNGVNAMALHGNKSQSARTQALAGFKSGDIRALVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ +L V++ E+ + PE+ +HR GRTGRAG G +V ++ Sbjct: 306 RGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLV 348 >gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris MCS10] gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10] Length = 452 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 185/335 (55%), Gaps = 1/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL++ GY T +Q ++ + +D++ AQTG+GKT +F L + + L+ EN Sbjct: 13 ILRALNDEGYETPTPIQREVIPAMIEGRDIVGIAQTGTGKTASFVLPILNRLIEENRPTH 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P + AL ++PTREL+ Q+ + V + +GGV + R L G ++V Sbjct: 73 PKTC-RALILSPTRELSAQILENVRGYSRHMRVSSTLVVGGVKPGPQIRALSKGVDVLVA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ + +S K ++LDEAD+MLDLGF I I+ P KR+ + SAT+ Sbjct: 132 TPGRLLDLMQSGAVKLSETKILILDEADQMLDLGFFPAIRKIVSFLPNKRQTALLSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ D V++A +R I+ VL+ + + ++ ++ + AIVF Sbjct: 192 KPIRALAQEMLDDPKEVSVAPASRPIERIEQSVVLLPKESKKDLLLELMSDRAVERAIVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L ++ + A+ G SQ +R AL + G ++ +ATD+AARGID+ Sbjct: 252 SRTKHGADKINRHLVDYGLKSAAIHGNKSQAQRIKALDGFKTGAVKILVATDIAARGIDV 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++ V++ +L + PE+ +HR GRT RAG+ G++V Sbjct: 312 DNVSHVVNHDLPNLPESYVHRIGRTARAGKSGVAV 346 >gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana] Length = 456 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 188/345 (54%), Gaps = 7/345 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AEND 67 +A G+ N + +Q L L KDV+ AQTGSGKT AF + + LL +E Sbjct: 22 KACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPK 81 Query: 68 RFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P A A ++PTRELA+Q+ + E L A + AV GG+ ++ L H Sbjct: 82 KGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLFGGIDRMQQTIALGKRPH 141 Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH+ KG ++ LK +VLDEAD +L+ F + IL+ P++R+ +F Sbjct: 142 VIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPRERKTFLF 201 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + ++ V++ AS+ + + VA +D +V IL Sbjct: 202 SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPES 261 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++F T VL F+ + +SG+++Q +R AL + G + + TDVA+ Sbjct: 262 TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS 321 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q Sbjct: 322 RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366 >gi|3775989|emb|CAA09197.1| RNA helicase [Arabidopsis thaliana] Length = 411 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 193/338 (57%), Gaps = 13/338 (3%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---PLALAIAPTRELAVQVGREL 94 +D++ A+TGSGKT+AFG+ +L +N + S P L ++PTRELAVQ+ L Sbjct: 26 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 85 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 G+ GG S + +++G IV+GTPGRL D I L +S + VVL Sbjct: 86 REAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVL 145 Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASEN 213 DEAD MLD+GF + + FIL ++ K R+M+MFSAT + LA+ + + ++V I S + Sbjct: 146 DEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVD 205 Query: 214 RQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN--AIVFCSTRASVSRFTKVLAEHL 268 ++ D ++ L + RD ++ +L +YH ++ +VF + R + L + Sbjct: 206 LA-ANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRG 264 Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328 ++ V++ G +Q ER+ +L + ++G + +ATDVAARG+D+PD+E+VI+ E+ Sbjct: 265 WKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDY 324 Query: 329 LHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363 +HR GRTGRAG+KG++ F P N E + REA Sbjct: 325 VHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREA 362 >gi|86159377|ref|YP_466162.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775888|gb|ABC82725.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 487 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 201/383 (52%), Gaps = 18/383 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + AL G+ + T +Q + P L +DV+ +A TG+GKT AF L + L Sbjct: 21 NLSEKTLHALERAGFEHPTPIQTQAIPPALAGRDVIGAAATGTGKTAAFLLPIIERLSGA 80 Query: 66 NDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + PA+A P AL +APTRELAVQ+ EL+ V A+ IGGV + + Sbjct: 81 ATKDRPAAAHARPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVGMGAQSAA 140 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++ ++V TPGRL DH++ + L+ +VLDEAD MLD+GF ++ IL PK R Sbjct: 141 LRD-HEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARVPKVR 199 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT++ + A+ + +D VRV +A + R L ++ ++ +L Sbjct: 200 QTLLFSATMAGEVADFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLMALLE 259 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + +VF T+ + K L +V + + SQ +R AL+ RDG+ RV +A Sbjct: 260 DDDL-STLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVA 318 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ--RRAE 357 TD+AARGID+ ++ V++ +L PE+ +HR GRT R G S FV P+ + R E Sbjct: 319 TDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFVSPEELDLLRDIE 378 Query: 358 RLFREANVSVVWEPAPSVEAIRE 380 RL R P P E RE Sbjct: 379 RLTR--------APIPRAEVPRE 393 >gi|15221761|ref|NP_175829.1| EIF4A-2; ATP-dependent helicase/ translation initiation factor [Arabidopsis thaliana] gi|1170505|sp|P41377|IF4A2_ARATH RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2; AltName: Full=ATP-dependent RNA helicase eIF4A-2; AltName: Full=DEAD-box ATP-dependent RNA helicase 19 gi|4585969|gb|AAD25605.1|AC005287_7 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana] gi|14423372|gb|AAK62368.1|AF386923_1 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana] gi|16226681|gb|AAL16231.1|AF428462_1 At1g54270/F20D21_52 [Arabidopsis thaliana] gi|16556|emb|CAA46189.1| eukaryotic translation initiation factor 4A-2 [Arabidopsis thaliana] gi|21593545|gb|AAM65512.1| eukaryotic translation initiation factor 4A, putative [Arabidopsis thaliana] gi|30725682|gb|AAP37863.1| At1g54270 [Arabidopsis thaliana] gi|110740791|dbj|BAE98493.1| Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana] gi|332194952|gb|AEE33073.1| translation initiation factor 4A-2 [Arabidopsis thaliana] Length = 412 Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 188/357 (52%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D AL Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD--YALLQCQAL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L +K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + ++ +++F +TR V Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + + QR + + NV V E PS Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVV--EELPS 406 >gi|312139811|ref|YP_004007147.1| dead/deah box helicase [Rhodococcus equi 103S] gi|311889150|emb|CBH48463.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] Length = 700 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 128/390 (32%), Positives = 200/390 (51%), Gaps = 19/390 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P+ + AL+ R + + S +A+ PD + K++L AQTGSGKT+AFGL + + L Sbjct: 8 LPEPVVAALA-RNSITVPSPIQAMAIPDAIAGKNILGRAQTGSGKTLAFGLPMLARLARH 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 DR +P P AL + PTRELA QV L G+ V +GG ++ L+ G Sbjct: 67 EDRPAPKR-PRALVLVPTRELAFQVVDSLTPYAGSLGLNVRAAVGGTPFTKQVDQLRRGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL DH+R + ++ LDEAD+M D+GF ++ +L +P + L+F Sbjct: 126 DILVATPGRLGDHLRQNTCVLGEIEMTALDEADQMADMGFLPEVRTLLADTPNDSQRLLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + TL + + + + + +D+ +LV D+D + I G + Sbjct: 186 SATLDNDVKTLVREFLPEHELHSTQDGRASVTTMDHYVLLVDRGDKDAVLAEIASREGGR 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ T+ L E AL G +Q +R+ L+ + GR V +ATDVAA Sbjct: 246 -TIMFARTKLGAEGITERLREKGVAAEALHGGKAQNQRTRVLERFKTGRTPVLVATDVAA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + ++LV+H + + ++ LHR+GRT RAG G+ ++ N +R RL A V Sbjct: 305 RGIHVDGIDLVVHVDPPQDHKDYLHRAGRTARAGEAGVVAAIVLPNQRRMFRRLTGMAGV 364 Query: 366 SVVWEP---------------APSVEAIRE 380 + P APS E +R+ Sbjct: 365 NATAVPVFPGSEELATITGAQAPSGEPVRD 394 >gi|39995599|ref|NP_951550.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA] gi|39982362|gb|AAR33823.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA] gi|298504618|gb|ADI83341.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400] Length = 450 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 192/373 (51%), Gaps = 4/373 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P ++ +A++ GY T VQ A + L D+L +AQTG+GKT AF L L + Sbjct: 10 PHIL-KAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPPQ 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + A V +GG+ H + R L Sbjct: 69 --GPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAPVDF 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + + L++S L+ +VLDEAD MLD+GF DD++ I +SP R+ L+F+A Sbjct: 127 IVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKN 246 T+ A+ LA ++ R++IA H I+ R V L ++ + +++ + Sbjct: 187 TMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHLITDESLRR 246 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AI+F +T+ L AL G++ Q R+ + M+ GR R+ +ATDVAAR Sbjct: 247 AIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAAR 306 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ + VI+ +L E+ +HR GRTGRAG G+++ N R+ R + Sbjct: 307 GLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIERYIGQT 366 Query: 367 VVWEPAPSVEAIR 379 + P +E R Sbjct: 367 LPEHHIPGLEPSR 379 >gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex] Length = 805 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 187/355 (52%), Gaps = 4/355 (1%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 + N T +Q + L +DV+ AQTGSGKT AF + +L + D P P+ L Sbjct: 320 FTNPTPIQSQAIPAALSGRDVIGIAQTGSGKTAAFLWPMIVHILDQPD-LKPGDGPIGLI 378 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 +APTREL+ Q+ E + G+ V C GG S + +DL+ GA IVV TPGR+ D + Sbjct: 379 LAPTRELSQQIYTEAKKFCKVFGISVVCCYGGGSKWEQSKDLEQGAEIVVATPGRMIDLV 438 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 + K N+ + +VLDEAD M D+GF + I + + +R+ L+FSAT I LA++ Sbjct: 439 KIKATNLQRVTFLVLDEADRMFDMGFEPQVRSICNHARPERQTLLFSATFKKRIEKLARD 498 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258 D +R+ + D+ ++A + + + ++ ++ + + + ++F + +A+ Sbjct: 499 VLSDPIRIVQGDVGEANQDVTQVIEVIAPTAKYSWLITRLVEFMASGSVLIFVTKKANAE 558 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 + L V L G++ Q +R+ + + + +ATDVAARG+D+P + V++ Sbjct: 559 ELSASLKSRELSVALLHGDMDQVDRNQVISSFKKKEMDILVATDVAARGLDIPHIRTVVN 618 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANVSVVWEP 371 +++ + + HR GRTGRAG KG + ++ + A L R E VV EP Sbjct: 619 YDIARDIDTHTHRIGRTGRAGEKGTAYTLVTPADKEFAGHLVRNLEGASQVVSEP 673 >gi|294053581|ref|YP_003547239.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] gi|293612914|gb|ADE53069.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] Length = 373 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 204/368 (55%), Gaps = 12/368 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA 64 +P + E +S G T +Q ++ L ++ D++ AQTG+GKT AFGL L + Sbjct: 10 GVPDDLVEGISALGIHEPTPIQTKVIPLLLEDQSDLIAQAQTGTGKTAAFGLPLLT---- 65 Query: 65 ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121 + P+ + AL +APTRELA Q+G++L ++K V V V GG + + L Sbjct: 66 ---KVDPSKEGIQALIVAPTRELAKQIGKQLFRFTKFSKKKVFVEVTAGGDKIEIQAERL 122 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 Q IVV TPGRL D + LN+ ++ +VLDEADEML +GFR ++ I + ++R Sbjct: 123 QRPTQIVVATPGRLMDLLELNALNLESVQYLVLDEADEMLSMGFRAELAKIFKLTKRRRG 182 Query: 182 MLMFSATISPAITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 +FSAT + LA N DA + +A + + +I++ + + D+D I++ L+ Sbjct: 183 TWLFSATFQDKVKRLAADNLSPDARMLKVAKKEVVNRNIEHSFAVCSREDKDEFILDYLK 242 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 G + ++F T+A R +VL + V L G+LSQ++R +++ + ++V +A Sbjct: 243 SKGTQRGMIFVRTKAGAIRLGEVLRDAGVPVGVLQGDLSQRDRDKVMRIFKRKESQVLVA 302 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGID+ L VI +L + HR+GRT RAG++G+S+ +I + + +L Sbjct: 303 TDVAARGIDIEALAFVIQHQLPDAGQYYTHRAGRTARAGKRGVSLTLIEPKERSKITKLE 362 Query: 361 REANVSVV 368 +E ++ + Sbjct: 363 QELGLNFM 370 >gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus VM573] gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus VM603] gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus VM603] gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus VM573] Length = 422 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 193/379 (50%), Gaps = 10/379 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 LS+ G VN T +Q+ + L+ KDVL AQTG+GKT AFGL L + + S Sbjct: 20 TLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWVREENS 79 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA QV ++ T + + GG S+ + L+ G I++ TP Sbjct: 80 KEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A +D V V + N + V + + ++ + +VF Sbjct: 200 IKAVAYRIMRDPVEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368 LE V++ ++ E+ +HR GRTGRAG G++V ++ + + + E + R N + Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQLEAIERLLNTRLPQEWL 379 Query: 369 --WEPAPSVEAIRERDAQR 385 +EP+P +RE ++ R Sbjct: 380 KGFEPSP---VVREENSPR 395 >gi|91228021|ref|ZP_01262106.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] gi|269964531|ref|ZP_06178770.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|91188250|gb|EAS74549.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] gi|269830658|gb|EEZ84878.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 439 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 187/342 (54%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65 PQVI E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL E Sbjct: 18 PQVI-EGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P + P A+ +APTRELA+Q+ + E L TG+ A+ GG S ++ LQ+G Sbjct: 77 HEGRKP-TQPRAIIMAPTRELAIQIYNDAESLTESTGLKTALAYGGESYDKQLAKLQDGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 I++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S + LA + V + E + I + D+ + ++ Sbjct: 196 LFSATLSYRVQELAFEHMNTPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+F +T+ LA +V L+G++ Q++R L+ G + +ATDV Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|115438621|ref|NP_001043590.1| Os01g0618400 [Oryza sativa Japonica Group] gi|75322035|sp|Q5ZBH5|RH25_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 25 gi|54290854|dbj|BAD61515.1| putative RNA helicase [Oryza sativa Japonica Group] gi|113533121|dbj|BAF05504.1| Os01g0618400 [Oryza sativa Japonica Group] gi|215695286|dbj|BAG90477.1| unnamed protein product [Oryza sativa Japonica Group] gi|222618865|gb|EEE54997.1| hypothetical protein OsJ_02628 [Oryza sativa Japonica Group] Length = 594 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 196/355 (55%), Gaps = 24/355 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDR 68 +A+ + GY +T VQEA L L+ KDVL A+TG+GKTVAF L L A D+ Sbjct: 139 KAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQ 198 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125 P+ L + PTRELA+QV E + L Y ++ + V V IGG + +E+R +Q N Sbjct: 199 LRPSIN--LLVMCPTRELAIQVAVEAKKLLKYHRS-LGVQVVIGGTRLTQEQRSMQANPC 255 Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 I+V TPGRL DH+ G + +K +VLDEAD +LD+GFR DIE I+ S PK+R+ Sbjct: 256 QILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVPKERQT 315 Query: 183 LMFSATISPAI-----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 L+FSAT+ + + KNY+ + + H+ + ++ L + + + Sbjct: 316 LLFSATVPEEVRQISHIAMKKNYK--FINTVKDGDEETHAQVSQMFMIAPLDLHFSILYD 373 Query: 238 ILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 +L+ H A++A I+FC+T ++L++ + + SQ R+ R Sbjct: 374 VLKKHVAEDADYKVIIFCTTAMVTKLVAEILSQLRLNIREIHSRKSQSARTKVSDEFRKS 433 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 R + +++DV+ARG+D PD+ LVI + ++ + +HR GRTGR G++G + ++ Sbjct: 434 RGLILVSSDVSARGVDYPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLL 488 >gi|186684628|ref|YP_001867824.1| DEAD/DEAH box helicase domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467080|gb|ACC82881.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC 73102] Length = 509 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/351 (34%), Positives = 184/351 (52%), Gaps = 8/351 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + G+ T++Q + L +DV+ +QTG+GKT AF L + L A Sbjct: 18 LEKIGFTEPTNIQVQAIPQLLGGRDVVGQSQTGTGKTAAFSLPILERLDINQ------KA 71 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 A+ + PTRELA+QV + G+ V GG S+ R+ L+ G H+VVGTPGR Sbjct: 72 VQAIVLTPTRELAMQVHDAIAQFIGDEGLRVLAIYGGQSIDRQMLQLRRGVHMVVGTPGR 131 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 + D + L + +K VLDEADEML +GF DD+ IL +P R+ +FSAT+ P+I Sbjct: 132 VIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPVDRQTALFSATMPPSIR 191 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCST 253 L + + V + + I+ A L+ + A+ IL + A++F T Sbjct: 192 MLVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEMEDPETALIFVRT 251 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R + + T L V G+LSQQ R L R+ + R +ATD+AARG+D+ L Sbjct: 252 RRTAAELTSQLQGAGHSVDEYHGDLSQQARERLLVRFRNRQVRWVVATDIAARGLDVDQL 311 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 VI+ +L + E +HR GRTGRAG++G ++ ++ Q +RR ++ F N Sbjct: 312 SHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLV-QPFERRKQQTFERHN 361 >gi|269104500|ref|ZP_06157196.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161140|gb|EEZ39637.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] Length = 430 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 189/344 (54%), Gaps = 15/344 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A + + T++ AIL KD+L S++TGSGKT+AF L + R P + Sbjct: 2 AFDQATEIQRTAIPVAILG-----KDILASSKTGSGKTLAFLLPAMQRMY----RSKPFT 52 Query: 74 A--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P L + PTRELA QV +L+ L A T A+ +GG + + + + L+ VV T Sbjct: 53 RRDPRVLILTPTRELAKQVFAQLKPLNAGTPYDAALIVGGENFNDQVKALRKDPMFVVAT 112 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS 190 PGRL DH+ + + L+ ++LDEAD MLDLGF ++ I +++ +RR LMFSAT+ Sbjct: 113 PGRLADHLEHRSTYLDGLEMLILDEADRMLDLGFEKELRRIHEAASHRRRQTLMFSATLD 172 Query: 191 -PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAI 248 P + +A R++I +H DI R +L A++N IL I Sbjct: 173 HPEVVEMAHEMLNAPKRISIGHSAEEHKDITQRFILCDNLTHKEALLNKILETEDYNQMI 232 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F +TRA R TK L + + VALSG L+Q +R++ + ++ + TD+A+RG+ Sbjct: 233 IFTATRADTDRLTKELNDRKLKAVALSGNLNQTQRNSIMSQFERFCHKILVTTDIASRGL 292 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 D+ ++ VI+ +L + E +HR GRTGRAG KG ++ FV P++ Sbjct: 293 DISNVSHVINFDLPKHAEEYVHRVGRTGRAGNKGDAISFVGPKD 336 >gi|253990397|ref|YP_003041753.1| ATP-dependent RNA helicase RhlE [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781847|emb|CAQ85010.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica] Length = 444 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 194/371 (52%), Gaps = 8/371 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY T +Q+ + L KD+L SAQTG+GKT F L + LL + + Sbjct: 15 AIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQ-LLNNSPVQTKGR 73 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QVG + + V GGVS++ + L+ G I+V TP Sbjct: 74 RPVRALILTPTRELAAQVGENVRNYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILVATP 133 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +++S ++ +VLDEAD MLD+GF DI +L+ P KR+ L+FSAT S Sbjct: 134 GRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPPKRQNLLFSATFSDE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V V +A N I+ V + + ++ + +VF Sbjct: 194 IKNLASKLLHNPVSVEVARRNSASEQIEQFVHFVDKKRKGELLSFLIGSRNWQQVLVFTR 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L + A+ G SQ R+ AL ++GR RV +ATD+AARG+D+ Sbjct: 254 TKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKEGRIRVLVATDIAARGLDIDQ 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368 L V++ EL + E+ +HR GRTGRA G + V V + + ERL + V Sbjct: 314 LPYVVNFELPNVSEDYVHRIGRTGRADATGQALSLVCVDEHKLLKDIERLLKREIPRVAI 373 Query: 369 --WEPAPSVEA 377 ++P P+++A Sbjct: 374 PGYDPDPTIKA 384 >gi|255537383|ref|XP_002509758.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223549657|gb|EEF51145.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 771 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 190/361 (52%), Gaps = 36/361 (9%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSP 71 +AL+ GYV +T VQEA L+ L KD LV A+TG+GK+ AF L A+ + L A++ P Sbjct: 315 KALTTAGYVQMTRVQEATLSACLEGKDALVKAKTGTGKSAAFLLPAIEAVLKAKSSNVKP 374 Query: 72 ASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIV 128 +P+ L + PTRELA Q+ E L G+ V +GG +++ L+ N I+ Sbjct: 375 RVSPIYVLILCPTRELASQIAAEANAMLKYHDGISVQTLVGGTRFKDDQKRLEMNPCQII 434 Query: 129 VGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 V TPGRL DHI KG +++ LK ++LDEAD +LDLGFR D+E I+D P++R LMF Sbjct: 435 VATPGRLLDHIENKGGLSVHLMGLKMLILDEADHLLDLGFRKDVEKIIDCLPRERHSLMF 494 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID--------------YRAVLVALSDR 231 SATI K+ R++ R+H+ ID +V+V Sbjct: 495 SATIP-----------KEVRRISQLVLKREHAFIDTVGLGSVETPSKVKQFSVVVPHELH 543 Query: 232 DNAIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 + + L+ H + IVFC+T S +L E V + Q R+ Sbjct: 544 FQVVHHFLKEHILQTPDYKVIVFCTTGMVTSLMYTLLREMKMNVKEIHSRKPQLYRTRVS 603 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 R+ R + +++DV+ARG++ PD+ LVI L ++ E +HR GRTGR G+ G + + Sbjct: 604 DEFRESRRSILVSSDVSARGMNYPDVTLVIQVGLPTDREQYIHRLGRTGREGKDGEGILL 663 Query: 348 I 348 + Sbjct: 664 L 664 >gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1] gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1] Length = 438 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|154324248|ref|XP_001561438.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10] gi|160419159|sp|A6RJA2|PRP28_BOTFB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28 gi|150842752|gb|EDN17945.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10] Length = 783 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 118/371 (31%), Positives = 193/371 (52%), Gaps = 29/371 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64 +P+ + + + + GY ++VQ A + L+ +D++ A TGSGKT AF L L + L Sbjct: 387 LPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELP 446 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + F+ P A+ +APTRELA Q+ E + G +GG S+ + +L+NG Sbjct: 447 PLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNG 506 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177 A I++ TPGRL D I + L + +++DEAD M+DLGF + + ILD+ P Sbjct: 507 AEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPD 566 Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219 + R+ +M++AT+ PA+ +AK Y + V I + + Sbjct: 567 TDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVTIGNIGEAVETV 626 Query: 220 DYRAVLVALSDRDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + R VA D+ +N + G A IVF + + + + + F V L G Sbjct: 627 EQRVEFVAGEDKRKKRLNEILASGEFAPPIIVFVNIKRNCDAVARDIKHMGFTSVTLHGS 686 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 +Q++R AL +R G V +ATD+A RGID+PD+ LV++ +++N E+ HR GRTGR Sbjct: 687 KTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGR 746 Query: 338 AGRKGMSVFVI 348 AG+ G+++ + Sbjct: 747 AGKSGVAITFL 757 >gi|82523824|emb|CAI78566.1| hypothetical protein [uncultured candidate division OP8 bacterium] Length = 453 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 125/340 (36%), Positives = 182/340 (53%), Gaps = 6/340 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL E G+ T +Q + P + +DV+ SA TGSGKT AF L + L+ DR P Sbjct: 14 KALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPILHQLI---DR--PR 68 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL I PTRELA Q+ +L L T + A GGVS+ + + G +++GTP Sbjct: 69 GTTRALVITPTRELAAQILEDLNDLAVHTPISAAAVFGGVSIRPQEHAFRRGVDVLIGTP 128 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH R ++ L+ +VLDEAD MLD+GF DI IL P +R+ L FSAT+ Sbjct: 129 GRLLDHFRAPYAKLAGLEHLVLDEADRMLDMGFLPDIRRILKHIPARRQTLFFSATMPAP 188 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA+ ++ VNI + I VA + +V +L+ ++A+VF Sbjct: 189 IGVLAREMLRNPATVNINRIAAPAAGITQAVYPVAQELKAALLVALLKRDDIRDALVFTR 248 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ +R + L + + G SQ R+ AL + G+ RV +ATD+AARGID+ + Sbjct: 249 TKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAGKYRVLVATDIAARGIDVTE 308 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351 L V++ ++ P++ +HR GRT RA G + FV PQ Sbjct: 309 LGHVVNFDVPLVPDDYIHRVGRTARAEATGDAFTFVSPQE 348 >gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R] gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R] Length = 389 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 116/339 (34%), Positives = 184/339 (54%), Gaps = 7/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL + + T +Q L L+ +D++ A TGSGKT AF L + L E Sbjct: 32 EALEQLNFKIPTEIQVQALPHALQGRDIIGVASTGSGKTAAFALPILQKLWEEPKGL--- 88 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A +APTRELA Q+ +++E L + GV +GG+ + L HIVV TP Sbjct: 89 ---FACIMAPTRELAYQISQQIEALGSAMGVRCVTLVGGMDKMAQAVALAKRPHIVVATP 145 Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +VLDEAD +LD+ F I+ IL + P++R +FSAT++ Sbjct: 146 GRLNDHLEDTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKAIPRERTTYLFSATMTT 205 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + + VRV ++ + S + + + L +D ++ + + I+F Sbjct: 206 KVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPLVQKDVHLIYLANILAQNSIIIFT 265 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T R + +L F V L G+LSQ R AL + G +V +ATDVA+RG+D+P Sbjct: 266 RTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLVATDVASRGLDIP 325 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ ++ ++ +HR GRT RAGR G S+ ++ Q Sbjct: 326 HVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQ 364 >gi|213053471|ref|ZP_03346349.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427378|ref|ZP_03360128.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289823676|ref|ZP_06543288.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 416 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 188/338 (55%), Gaps = 12/338 (3%) Query: 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-- 97 + A+TGSGKT AFGL L + + F AL + PTRELA QV EL L Sbjct: 2 CVCKARTGSGKTAAFGLGLLHRI--DVTLFQTQ----ALVLCPTRELADQVAGELRRLAR 55 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + ++ +C GG +R LQ+ HI+V TPGRL DH++ + +++ L +V+DEA Sbjct: 56 FLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEA 114 Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217 D MLD+GF D I+ ++ +P R+ L+FSAT AI ++ Q+ +R+ I + + + Sbjct: 115 DRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPA 174 Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 I+ + + ++ + + +L H + +VFC+T+ L +AL G+ Sbjct: 175 -IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGD 233 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 L Q++R L +G AR+ +ATDVAARG+D+ LELV++ EL+ +PE +HR GRT R Sbjct: 234 LEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTAR 293 Query: 338 AGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPS 374 AG G+++ F P+ Q RA L + + W AP+ Sbjct: 294 AGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLNAPA 330 >gi|148979305|ref|ZP_01815437.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3] gi|145961845|gb|EDK27137.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3] Length = 424 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 112/325 (34%), Positives = 174/325 (53%), Gaps = 6/325 (1%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q+A++ + +DVL AQTGSGKT+AFGL L + + +++ AL I PT Sbjct: 24 TEIQQAVIPTIVSGRDVLALAQTGSGKTLAFGLPLLNNIDQGSNKLQ------ALVIVPT 77 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA QV L+ + + GG + +++ L I + TPGRL I+ Sbjct: 78 RELASQVTESLKPIATALSIKTVTLTGGRNADEQQQQLSTAPQIAIATPGRLLALIKSGE 137 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L ++ ++VLDEAD ++D+GF DI+ I + P KR+ L+FSAT+ P + + A+ + Sbjct: 138 LELAQCTSLVLDEADRLIDMGFWPDIQAITAALPTKRQSLLFSATLPPELVSQAETLLSN 197 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 ++ EN I+ LV + A++ +L + +VF + + TK Sbjct: 198 PKKITTHKENSVVEAIEETLYLVNKGSKAQALIALLNQNPWPQVLVFIGAKDNADALTKR 257 Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323 L + V AL G SQ+ER+ AL ++G RV IATDV ARGI + L +VI+ EL Sbjct: 258 LNKAKISVSALHGNKSQEERAQALDSFKNGDTRVLIATDVMARGIHIDQLPIVINFELPP 317 Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348 + +HR GRT RAG G ++ ++ Sbjct: 318 HAATYVHRVGRTARAGSTGCAISLV 342 >gi|71279965|ref|YP_269372.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H] gi|71145705|gb|AAZ26178.1| ATP-dependent RNA helicase, DEAD box family [Colwellia psychrerythraea 34H] Length = 399 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 172/328 (52%), Gaps = 1/328 (0%) Query: 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 +GY T +Q+ + + D+L AQTG+GKT AF L + + N A + + Sbjct: 20 KGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKF-GRNKIDIKAKSTRS 78 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L + PTRELA Q+ + ++ G+ V GGV + ++ G I+V TPGRL D Sbjct: 79 LILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVATPGRLLD 138 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 I +N L+ VLDEAD MLD+GF D++ I+ PK R+ L+FSAT+ I LA Sbjct: 139 LIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEIEILA 198 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + D ++ I +E ++ + S++ + NIL + ++FC T+ Sbjct: 199 EAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNILTKADYEKVLIFCKTKYGA 258 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 K L + +L +Q R ALQ +D RV +ATDVAARGID+ ++ LVI Sbjct: 259 DIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGIDVDNITLVI 318 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + L +P N +HR GRT RAG+ GM++ Sbjct: 319 NYNLPEDPRNYIHRIGRTARAGKSGMAI 346 >gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1] gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1] Length = 452 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|226305684|ref|YP_002765644.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] gi|226184801|dbj|BAH32905.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] Length = 474 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/318 (38%), Positives = 172/318 (54%), Gaps = 8/318 (2%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPASAPLALAIAPTRELAVQVGRELE-- 95 D++ A+TG GKT FG+ L ++ AEN P AL I PTREL +QV R+LE Sbjct: 7 DLIGQARTGMGKTFGFGVPLLHRIVTAENGTAVLDGTPRALIIVPTRELCIQVARDLENA 66 Query: 96 --WL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152 +L G+ V GG + LQ G +VVGTPGRL D L + + + Sbjct: 67 SKYLRVGDRGLQVLPIYGGRPYEAQISALQKGVDVVVGTPGRLLDLANQSHLILGKVGVL 126 Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY--QKDAVRVNIA 210 VLDEADEMLDLGF DIE ++ P KR+ ++FSAT+ I TLA+ + Q +R A Sbjct: 127 VLDEADEMLDLGFLPDIERLMGMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEEA 186 Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270 + H D+ + +L+ G ++F T+ + + LAE F Sbjct: 187 ESSAVHDRTSQHIYRAHALDKAEMVARVLQAEGRGATMIFTRTKRTAQKVADDLAERGFS 246 Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330 V A+ G+L Q R AL+ R+G+ V +ATDVAARGID+ D+ VI+ + + + +H Sbjct: 247 VGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVH 306 Query: 331 RSGRTGRAGRKGMSVFVI 348 R GRTGRAGR G++V ++ Sbjct: 307 RIGRTGRAGRTGIAVTLV 324 >gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197] gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197] Length = 454 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|332849248|ref|XP_511724.3| PREDICTED: eukaryotic initiation factor 4A-III [Pan troglodytes] Length = 411 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELSIHRIGRSGRYGRKGVAI 378 >gi|229493377|ref|ZP_04387166.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121] gi|229319693|gb|EEN85525.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121] Length = 455 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 187/358 (52%), Gaps = 4/358 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFS 70 +AL + G + +Q L L +DVL +TGSGKT+AF + + S L E + Sbjct: 22 KALEDGGITSPFPIQIDTLPDTLSGRDVLGRGKTGSGKTLAFSIPMVSRLAGELSGGKRR 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P PL L +APTRELA Q+ LE L A + V GGVS HR+ + L+ G IVV Sbjct: 82 PGR-PLGLVLAPTRELATQITATLEPLAAAYDLRVTTIFGGVSQHRQVQALKAGVDIVVA 140 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 PGRL D ++ K +++ ++ VLDEAD M DLGF + IL S+P+ + L+FSAT+ Sbjct: 141 CPGRLEDLMKQKFVSLDAVEITVLDEADHMADLGFLPVVTRILSSTPQDGQRLLFSATLD 200 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K + K+ V ++ N + + + V + A+V L G I+F Sbjct: 201 NGVDKLVKRFLKNEVMHSVDEANSPVAAMTHHVFDVDGVEAKKALVEKL-ASGTGRRILF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L E V L G LSQ R L G ARV +ATDVAARG+ + Sbjct: 260 MRTKHQARKLARQLTESGIPSVDLHGNLSQAARDRNLAAFSAGEARVLVATDVAARGVHV 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ELV+H + + + LHRSGRT RAG G V V+ ++ L R+A + V Sbjct: 320 DDVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVVLPEQRKDLAILMRKAAIKVT 377 >gi|226305824|ref|YP_002765784.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] gi|226184941|dbj|BAH33045.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] Length = 479 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 187/358 (52%), Gaps = 4/358 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFS 70 +AL + G + +Q L L +DVL +TGSGKT+AF + + S L E + Sbjct: 22 KALEDGGITSPFPIQIDTLPDTLSGRDVLGRGKTGSGKTLAFSIPMVSRLAGELSGGKRR 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P PL L +APTRELA Q+ LE L A + V GGVS HR+ + L+ G IVV Sbjct: 82 PGR-PLGLVLAPTRELATQITATLEPLAAAYDLRVTTIFGGVSQHRQVQALKAGVDIVVA 140 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 PGRL D ++ K +++ ++ VLDEAD M DLGF + IL S+P+ + L+FSAT+ Sbjct: 141 CPGRLEDLMKQKFVSLDAVEITVLDEADHMADLGFLPVVTRILSSTPQDGQRLLFSATLD 200 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L K + K+ V ++ N + + + V + A+V L G I+F Sbjct: 201 NGVDKLVKRFLKNEVMHSVDEANSPVAAMTHHVFDVDGVEAKKALVEKL-ASGTGRRILF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L E V L G LSQ R L G ARV +ATDVAARG+ + Sbjct: 260 MRTKHQARKLARQLTESGIPSVDLHGNLSQAARDRNLAAFSAGEARVLVATDVAARGVHV 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ELV+H + + + LHRSGRT RAG G V V+ ++ L R+A + V Sbjct: 320 DDVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVVLPEQRKDLAILMRKAAIKVT 377 >gi|307294408|ref|ZP_07574252.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] gi|306880559|gb|EFN11776.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] Length = 454 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 180/332 (54%), Gaps = 3/332 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E GY T +Q + P L KD++ AQTG+GKT +F L + L R A Sbjct: 14 KAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDILAHGRAR---A 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L + PTRELA QV E + +A+ IGGV + + + L+ G +++ TP Sbjct: 71 LMPRSLILEPTRELAAQVAENFEKYGKYHKLNMALLIGGVQMGDQLKALEKGVDVLIATP 130 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + ++ +V+DEAD MLD+GF DIE I P +R+ L+FSAT+ P Sbjct: 131 GRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQTLLFSATMPPV 190 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + + + +A ++I R V V + A+ +L +A++FC+ Sbjct: 191 IKKLADRFLSNPKSIEVARPATASTNITQRLVKVDSRKKREALRAMLEAEDVLSAVIFCN 250 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + +V K L H F+ + G++ Q R L+ R G + +A+DVAARG+D+ Sbjct: 251 RKTTVRDLNKSLQRHGFKSGEIHGDIDQSARIAELERFRAGSVNILVASDVAARGLDIKG 310 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 + V + + +P++ +HR GRTGRAG KG++ Sbjct: 311 VSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVA 342 >gi|227496959|ref|ZP_03927211.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434] gi|226833567|gb|EEH65950.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434] Length = 468 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 192/360 (53%), Gaps = 8/360 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + L RG+ + +Q A L LR +DVL +TGSGKT+AF L L L A++D Sbjct: 42 PELVAD-LDSRGFTSPFPIQTATLPDTLRGRDVLGRGRTGSGKTLAFSLPLVQRL-ADDD 99 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P PL L +APTRELA+Q+ + L + V GGVS + + L G I Sbjct: 100 APRPGY-PLGLVLAPTRELALQIADTIRPLATALDLTVTTVFGGVSQKPQEKALAAGVDI 158 Query: 128 VVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 VV PGRL D + G+G+ + + VLDEAD M DLGF ++ I+ ++P + + ++FS Sbjct: 159 VVACPGRLLD-LMGQGIVRLDDVAITVLDEADHMADLGFLPNVRRIMRATPPRGQRMLFS 217 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245 AT+ + L + D + ++ + D+D+R VA + +D ++++ G Sbjct: 218 ATLDNGVDKLVDEFLHDPLHHSVDPASSPVRDMDHRVWTVADKTAKDGLVLHL--ASGTG 275 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ R + L V L G +SQ R A+ G+A V +ATD+AA Sbjct: 276 QRILFTRTKHLARRLARKLVAAGIPAVELQGNMSQNARERAMGAFSAGQAHVMVATDIAA 335 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGID+ +ELV+H + + + LHRSGRT RAG G V ++ + + L ++A + Sbjct: 336 RGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGASGTVVTLVLPEQKHDVQVLLKKAKI 395 >gi|125559478|gb|EAZ05014.1| hypothetical protein OsI_27195 [Oryza sativa Indica Group] Length = 414 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 113/333 (33%), Positives = 185/333 (55%), Gaps = 5/333 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ T +Q + L+ +DV+ QTGSGKT AF L + LL R LA Sbjct: 2 GWKAPTRIQAEAIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHR----PRFLAC 57 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA+Q+ ++ E L + + +V IGG+ + L H+VVGTPGRL DH Sbjct: 58 VLAPTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLDH 117 Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 + KG + + LK +VLDEAD++L + F+ ++ IL+ PK+RR +FSAT++ + L Sbjct: 118 LTNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKLR 177 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + K+ V+V +AS+ + +V +D ++++L +VF T S Sbjct: 178 RACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGSMIMVFVRTCEST 237 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 +L F+ +++SG++SQ +R AL R + + TDVA+RG+D+ +++VI Sbjct: 238 RLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDVVI 297 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + + N ++ +HR GRT RAG+ G +V ++ Q Sbjct: 298 NYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQ 330 >gi|319442814|ref|ZP_07991970.1| putative ATP-dependent RNA helicase [Corynebacterium variabile DSM 44702] Length = 456 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 122/352 (34%), Positives = 189/352 (53%), Gaps = 14/352 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+++G ++QE L L KD++ A+TG GKT+ FG+ + L + D Sbjct: 17 IVDALTDQGIDRAFAIQERTLPLALTGKDLIGQARTGMGKTLGFGVPMLDRLFDDADITE 76 Query: 71 PASAPLALAIAPTRELAVQVGRELEW----LYAKTG--------VVVAVCIGGVSVHRER 118 L + PTREL +QV +L L A G V GGV ++ Sbjct: 77 LDGTVRGLVVVPTRELCLQVAEDLTGASTRLTAPVGPGKDATRPFRVTAIYGGVPFEKQT 136 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L G +VVGTPGRL D R L+++H++ +VLDEADEMLD GF DD++ I+ + Sbjct: 137 AALDAGTDVVVGTPGRLLDLSRQNLLDLTHVEVLVLDEADEMLDQGFLDDVKAIMAQTSP 196 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIV 236 R+ ++FSAT+ I L +++ VRV + + Q + ++ DR + + Sbjct: 197 NRQTMLFSATMPGPIVALTRSFMHRPVRVRADNSSAQATHATTTQIVFQSHRLDRVSVLA 256 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 IL+ G IVF T+ S + + LA F+V A+ G++ Q +R +L RDG Sbjct: 257 RILQTPGRGRTIVFARTKRSAAMVAEDLAGLGFRVGAVHGDMRQNDRERSLDAFRDGSVD 316 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + +ATDVAARGID+ D+ VI+ ++ + + +HR GRTGRAG G++V ++ Sbjct: 317 IMVATDVAARGIDVEDVTHVINYQVPEDDKTYVHRIGRTGRAGHSGVAVTLV 368 >gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886] gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886] Length = 436 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 184/337 (54%), Gaps = 6/337 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L + R P Sbjct: 15 AIQEKGYDTPSPIQMQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILERL-SNGGRTRPNH 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 AL + PTRELA Q+ E +Y++ + +V GGV ++ + L+ G I+V TP Sbjct: 74 V-RALILTPTRELAAQI-HENAVVYSRHLPLRSSVVFGGVKINPQMMALRKGTDILVATP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + + S L+ +VLDEAD MLD+GF DI+ ILD PK R+ L+FSAT S Sbjct: 132 GRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQSLLFSATFSDE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFC 251 I LAK + V +++ N ++ + + A + A+++ L G K +VF Sbjct: 192 IRNLAKGLVNNPVEISVTPANSTARTVE-QCIYPADKKKKPAMLSKLIKDGDWKQVLVFT 250 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ ++ + L E + G SQ R+ AL + G RV +ATD+AARGID+P Sbjct: 251 RTKHGANKLARFLNEEGITAAPIHGNKSQSARTKALADFKTGDVRVLVATDIAARGIDIP 310 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ E+ E+ +HR GRTGRAG G ++ ++ Sbjct: 311 QLPQVVNFEIPHVAEDYVHRIGRTGRAGEPGKAISLV 347 >gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1] Length = 438 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|238061200|ref|ZP_04605909.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] gi|237883011|gb|EEP71839.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] Length = 557 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 127/357 (35%), Positives = 194/357 (54%), Gaps = 20/357 (5%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+ + EAL+E G ++QE + LR D++ A TG+GKT+ FG+ L + Sbjct: 60 PETV-EALAEAGITRAFAIQEYAIPIALRGVDMIGQAPTGTGKTLGFGVPLLERV----- 113 Query: 68 RFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 F+PA P AL + PTREL +QV ++L GV V GGV+ + L+ Sbjct: 114 -FAPAEGGDGVPQALVVVPTRELGIQVAKDLAAAGRTRGVRVLPIYGGVAYEPQIDALRK 172 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I+VGTPGRL D + K L + ++A+VLDEAD MLDLGF DD+E IL P+ R+ + Sbjct: 173 GVEILVGTPGRLMDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTM 232 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNI 238 +FSAT+ I TL++ + + + ++ + Q + YR + ++ + I Sbjct: 233 LFSATMPDPIVTLSRRFLRRPMTIHAGHTAETGPSPQTEQLVYRTHSM---NKIEIVARI 289 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ G ++F T+ + R + L F V A+ G+L Q R AL+ R G+ + Sbjct: 290 LQAEGRGLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDIL 349 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 +ATDVAARG+D+ + VI+ + + + HR GRTGRAG G++V FV +M R Sbjct: 350 VATDVAARGLDVSGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPR 406 >gi|319426890|gb|ADV54964.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 427 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 183/338 (54%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E YV+ T VQ A + L +DVL A TGSGKT AF + L L+ + Sbjct: 24 LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVDAKTEDKTGAY 83 Query: 75 PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA QV L K +V A GGVSV+ + + L++GA ++V Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRSGADVLVA 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ + A+VLDEAD ML LGF +++ +LD+ P K++ L+FSAT Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELTQVLDALPVKKQTLLFSATFP 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L + + + SE Q S I R + V + + ++++ H A++F Sbjct: 202 EEVRELTAKLLNNPLEYQLQSE--QESTIHQRVITVNRPMKTALLAHLIKEHLWSQALIF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 S + + + + L++ G+ +Q R+ L ++G V IATD+AARGID+ Sbjct: 260 VSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L +VI+ +L +P + +HR GR+GRAG G++V +I Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357 >gi|320580546|gb|EFW94768.1| ATP-dependent RNA helicase [Pichia angusta DL-1] Length = 529 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 128/384 (33%), Positives = 203/384 (52%), Gaps = 16/384 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P + + + +G+ N T++Q L +D++ A TGSGKT+++ L + A+ Sbjct: 103 FPDYVLKEVKAQGFPNPTAIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPAIVHINAQ- 161 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 P P+ L +APTRELAVQ+ +E + ++ + C+ GGV ++ RDL GA Sbjct: 162 PLLQPGDGPICLVLAPTRELAVQIQKECS-KFGRSSRIRNTCVYGGVPKGQQIRDLARGA 220 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I + TPGRL D + N+ + +VLDEAD MLD+GF I I+D R+ LM+ Sbjct: 221 EICIATPGRLLDMLDSGRTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 280 Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNI---LR 240 SAT ++ TLA++Y D ++VNI S + H+ V RD ++ ++ Sbjct: 281 SATWPKSVQTLARDYLNDYIQVNIGSLDLAASHNIKQIIDVCSEYEKRDKLAKHLETAMQ 340 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 AK IVF ST+ + T + + +A+ G+ Q+ER L R GR+ + +A Sbjct: 341 DPQAK-VIVFASTKRTCDEITAYMRSEGWPALAIHGDKEQRERDWVLSEFRSGRSPIMVA 399 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359 TDVAARGID+ + VI+ ++ N E+ +HR GRTGRAG KG ++ + +A L Sbjct: 400 TDVAARGIDVKGVTTVINHDMPGNVEDYVHRIGRTGRAGEKGTAITMFTDGNSGQAHDLI 459 Query: 360 --FREANVSVVWEPAPSVEAIRER 381 REA + P ++A+ ++ Sbjct: 460 TILREAKQEI----PPQLQALDKK 479 >gi|254577027|ref|XP_002494500.1| ZYRO0A02948p [Zygosaccharomyces rouxii] gi|238937389|emb|CAR25567.1| ZYRO0A02948p [Zygosaccharomyces rouxii] Length = 557 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 117/316 (37%), Positives = 177/316 (56%), Gaps = 10/316 (3%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDR---FSPASAPLALAIAPTRELAVQVGREL 94 +D+L A TGSGKT+AF + + + R PLAL +APTRELA Q+ +E Sbjct: 195 RDLLGIASTGSGKTLAFLIPILMKIDQLPSRPLVLKKMDGPLALILAPTRELAQQIEKEA 254 Query: 95 EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152 E L G VA +GG S+ + G I+V TPGRL D + L + ++ + Sbjct: 255 EELIDAWGKNCEVASIVGGHSIEEISLQVSQGTDILVATPGRLIDCLENHVLTLGKVETL 314 Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212 VLDEAD M+D+GF + + IL + +KR+ +MF+A+++P +A Y K+ VRV ++ Sbjct: 315 VLDEADRMIDMGFEEQVTSILGNLTQKRQTMMFTASMTPGTEKIAAGYLKNPVRVTVSGS 374 Query: 213 NRQHSDIDYRAVLVAL---SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269 Q S R ++ + R IV L + A I RA+ K E + Sbjct: 375 --QGSTPMIRQLVEHIGSEEQRFQRIVEFLPQYRAPIIIFINYKRAADWLVQKFYKETQY 432 Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329 +V L G SQ++R +LQ++R G+ ++ IAT+VAARG+D+PD+ LVI+ +LS E+ + Sbjct: 433 KVTVLYGSKSQEQREQSLQLLRKGKVQIMIATNVAARGLDVPDVSLVINFQLSKTFEDYV 492 Query: 330 HRSGRTGRAGRKGMSV 345 HR GRTGRAG +G ++ Sbjct: 493 HRIGRTGRAGHEGTAI 508 >gi|255564033|ref|XP_002523015.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 956 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 194/343 (56%), Gaps = 11/343 (3%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + + + G++ T +Q LR +D++ A+TGSGKT G + + +L Sbjct: 497 PEILND-IRDAGFLAPTPIQAQTWPIALRNRDIVAIAKTGSGKT--LGYLIPAFILLRQC 553 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 R +P + P L +APTRELA Q+ E+ + ++ V C+ GG + ++L GA Sbjct: 554 RNNPQNGPTVLVLAPTRELATQIQDEV-IKFGRSSRVSCTCLYGGAPKGPQLKELTRGAD 612 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL D + K ++ + +VLDEAD MLD+GF I I++ P +R+ LM++ Sbjct: 613 IVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYT 672 Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH-- 242 AT + +A + + V+VNI S E + I +V ++++ + ILR Sbjct: 673 ATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKESRLGQILRAQER 732 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G+K I+FCST+ + + + H F A+ G+ SQ ER L R G++ + +ATD Sbjct: 733 GSK-VIIFCSTKRLCDQLARSIG-HQFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATD 790 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ D+ +VI+ + + E+ +HR GRTGRAG G++V Sbjct: 791 VAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVNV 833 >gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii TW07627] gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii TW07627] Length = 447 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + ++ + +VF T Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSYMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAVP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|167035545|ref|YP_001670776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida GB-1] gi|166862033|gb|ABZ00441.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1] Length = 489 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 185/338 (54%), Gaps = 8/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70 A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ S L +R+ Sbjct: 114 AIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERY- 172 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129 P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ I+V Sbjct: 173 -MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILV 231 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187 TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K R+ L+FSA Sbjct: 232 ATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA 291 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T + + LAK + + V I EN ++ VA SD+ + N++ + + Sbjct: 292 TFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERV 351 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF + + V R + L LSG++ Q +R L+ R+GR V +ATDVA RG Sbjct: 352 MVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRG 411 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 I + + VI+ L +P++ +HR GRTGRAG G+S+ Sbjct: 412 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSI 449 >gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262086740|gb|ACY22708.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 43247] Length = 543 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 196/374 (52%), Gaps = 16/374 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSP 71 AL++ G + ++QE L + D++ A+TG GKT FG+ L L E+ + Sbjct: 39 ALADDGKTHTFAIQELTLPLAMGGDDLIGQARTGMGKTFGFGVPLLHRLAHAEESGLRAL 98 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVV----VAVCIGGVSVHRERRD 120 + P AL I PTREL +QV +LE K G V + GG + D Sbjct: 99 DNTPRALIIVPTRELCIQVTGDLEVAAKKLTDITLADGTVRPLKITSIYGGRPYESQIAD 158 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G +VVGTPGRL D + L + + +VLDEADEMLDLGF DIE I+ + P R Sbjct: 159 LRAGVDVVVGTPGRLLDLAQQGHLILGKVAVLVLDEADEMLDLGFLPDIERIMSALPTPR 218 Query: 181 RMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 + ++FSAT+ I TLA+ + + +R A ++ H D+ + I Sbjct: 219 QTMLFSATMPGPIVTLARTFLHRPTHIRAEHADDSAIHERTTQYVYRAHALDKAELVARI 278 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ G ++F T+ + + LAE F+V A+ G+L Q R AL+ RDG V Sbjct: 279 LQAEGRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKALKRFRDGTIDVL 338 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARGID+ D+ VI+ ++ + +N +HR GRTGRAGR G++V ++ + R E Sbjct: 339 VATDVAARGIDIDDVTHVINYQIPEDDKNYVHRIGRTGRAGRTGIAVTLVDWDELHRWE- 397 Query: 359 LFREANVSVVWEPA 372 L A + EPA Sbjct: 398 LINNALGLGIPEPA 411 >gi|294936207|ref|XP_002781657.1| eukaryotic translation initiation factor, putative [Perkinsus marinus ATCC 50983] gi|239892579|gb|EER13452.1| eukaryotic translation initiation factor, putative [Perkinsus marinus ATCC 50983] Length = 395 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 185/342 (54%), Gaps = 13/342 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPA 72 + + G+ ++VQ+ + P ++ +DV+V +Q+G+GKT F L AL + E D Sbjct: 36 GIYQYGFERPSAVQQRAILPIVKGRDVVVQSQSGTGKTCVFALGALQTVKPTERD----- 90 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L ++PTRELA Q + L V V C+GG + + R L+ G HIV GTP Sbjct: 91 --PQVLILSPTRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEAGVHIVSGTP 148 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ I + L+ HLK +VLDEADEMLD GF++ + I P + ++ SAT+ Sbjct: 149 GRVYHMISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLPPSTQCVLVSATMPNE 208 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIV 249 I + N+ + RV + + I + VA+ + + ++ A++ Sbjct: 209 ILEMTNNFMNNPFRVLVKRDELTLEGI--KQFFVAVEKEQWKFDTLCDLYDTLTITQAVI 266 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC+T+ V T + E F VV++ G++ Q+ER +Q R G+ARV I TD+ RG+D Sbjct: 267 FCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVLITTDIWGRGLD 326 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 + + LVI +L +N E +HR GR+GR GRKG+++ + ++ Sbjct: 327 VQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKED 368 >gi|116668333|pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 109/328 (33%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 20 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ------VRETQAL 73 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQV + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 74 ILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 133 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ + + Sbjct: 134 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEVLEMTN 193 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 194 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 253 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 254 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 313 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG++V Sbjct: 314 NYDLPNNRELYIHRIGRSGRYGRKGVAV 341 >gi|284034767|ref|YP_003384698.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida DSM 17836] gi|283814060|gb|ADB35899.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836] Length = 554 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 133/394 (33%), Positives = 193/394 (48%), Gaps = 16/394 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + AL+ G +Q A L L KDVL +TGSGKT AF L L + L Sbjct: 71 GLPAELVTALAAAGVHKPFPIQAATLPDSLAGKDVLGRGRTGSGKTYAFVLPLIARLATS 130 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P + P AL +APTRELA Q+ + L G+ GGV + L+ G Sbjct: 131 GTRRRP-NQPRALILAPTRELATQIQASISPLTDAFGLRTMTVFGGVGHGPQITGLRKGV 189 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IVV PGRL DH++ + ++ VLDEAD M DLGF + +L+++P + L+F Sbjct: 190 DIVVACPGRLEDHVKAGHAKLDAVEITVLDEADHMADLGFLPAVRRLLEATPATGQRLLF 249 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L K + + V ++ S + + + + V R +V++ G Sbjct: 250 SATLDAGVDVLVKRFMRSPVTHSVDSAQSPVAKMTHHVLHVQPDSRLPVLVDLAAAPG-- 307 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ TK L V L G LSQ R+ L+ DG A+ +ATD+AA Sbjct: 308 RTLVFTRTKYGAKSLTKKLIAQGVPAVELHGNLSQGARTRNLEAFSDGSAKTLVATDIAA 367 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + D+ LVIHA+ + LHRSGRT RAG +G V ++ + R L R+A + Sbjct: 368 RGIHVDDVSLVIHADPPIEHKAYLHRSGRTARAGAEGTVVTLMTDDQVRDVRDLTRKAGI 427 Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD 399 AP+V +R + DPL + G+ Sbjct: 428 ------APTVTKLR-------IGDPLLTELAPGE 448 >gi|149187436|ref|ZP_01865734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio shilonii AK1] gi|148838972|gb|EDL55911.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio shilonii AK1] Length = 442 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 185/337 (54%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 LS + T +Q+ + + KD+L S++TGSGKT+AF L + L ++ FS A Sbjct: 16 LSHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKAL-KSKAFS-ARD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P A+ +APTRELA QV EL+ + + +GG + + + + L+ +V TPGR Sbjct: 74 PRAVILAPTRELAKQVYGELKSMLGGLSYDATLILGGENFNDQVKALRRYPKFIVATPGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192 L DH+ + L + L ++LDEAD MLDLGF ++ I +++ +RR LMFSAT+ A Sbjct: 134 LADHLEHRSLFLDGLDTLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251 + +A R+ I N +H DI + L D AI+ IL K I+F Sbjct: 194 VNDIAAEMLDAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERILEQAEYKQVIIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR R TK L E + VALSG L+Q +R+ + ++ + TDVA+RGID+ Sbjct: 254 ATRVDTERLTKWLNEKKLKAVALSGNLNQTQRNAIMSQFERHVFKILVTTDVASRGIDIA 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + VI+ ++ + E +HR GRTGRAG KG +V ++ Sbjct: 314 SVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLV 350 >gi|125775187|ref|XP_001358845.1| GA20384 [Drosophila pseudoobscura pseudoobscura] gi|195144826|ref|XP_002013397.1| GL23429 [Drosophila persimilis] gi|54638586|gb|EAL27988.1| GA20384 [Drosophila pseudoobscura pseudoobscura] gi|194102340|gb|EDW24383.1| GL23429 [Drosophila persimilis] Length = 399 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 190/341 (55%), Gaps = 7/341 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +++ +L Sbjct: 32 NLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 88 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L ++PTRELAVQ+ + + L V+ VCIGG ++ + R L G Sbjct: 89 ---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVLCHVCIGGTNLGEDIRKLDYGQ 145 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIV GTPGR+ D I+ + L +K +VLDEADEML+ GF++ I + P ++++ Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ I + + D +R+ + + I V V + + + + ++ Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC+T+ V T+ + E F V ++ G++ Q+ER ++ R G++RV I TDV Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ + LVI+ +L +N E +HR GR+GR GRKG+++ Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366 >gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167] Length = 454 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|225684976|gb|EEH23260.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis Pb03] gi|226294288|gb|EEH49708.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis Pb18] Length = 399 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 189/340 (55%), Gaps = 14/340 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T+L E Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG +V + R L +G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L ++K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 155 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 LVI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374 >gi|25809056|gb|AAN74636.1| DEAD box RNA helicase [Pisum sativum] Length = 413 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 120/361 (33%), Positives = 193/361 (53%), Gaps = 7/361 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGHDVIQQAQSGTGKTATF----CSGVLQQLD--YNVTQCQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L+ ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLHPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 + +L + PEN LHR GR+GR GRKG+++ + + + + + + NV V P+ E Sbjct: 353 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVNKEDEAMLQDIQKFYNVLVEELPSNVAEL 412 Query: 378 I 378 + Sbjct: 413 L 413 >gi|79313227|ref|NP_001030693.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor [Arabidopsis thaliana] gi|332641918|gb|AEE75439.1| translational initiation factor 4A-1 [Arabidopsis thaliana] Length = 415 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 184/337 (54%), Gaps = 7/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D FS AL Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + +L + PEN LHR GR+GR GRKG+++ + ++ +R Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 >gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus PAl 5] gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus PAl 5] Length = 390 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 176/341 (51%), Gaps = 4/341 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ ++ GY + +Q + P +DV A+TG+GKT AF L + LL Sbjct: 23 PRIVAN-VARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIHRLLTGAG 81 Query: 68 RFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 +P+ P AL ++PTRELA Q + G+ VA+ IGG R+ R L +G Sbjct: 82 DAAPSGPPGHVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQARALLDG 141 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I+V TPGRL DH+ + + H +VLDEAD MLDLGF +D+ I P + + L+ Sbjct: 142 VDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLPVRHQTLL 201 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+SPAI+ L + +++ + I + + + + +++ +LR Sbjct: 202 FSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAASLLAVLRREAG 261 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF T+ + + L AL G+ Q R L R GR V +ATDV Sbjct: 262 GRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLVLVATDVM 321 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ + LV++ ++ PE +HR GRT RAGR+G ++ Sbjct: 322 ARGIDVEGVALVVNFDIPEQPETYIHRIGRTARAGRRGTAL 362 >gi|239942861|ref|ZP_04694798.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998] Length = 457 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 197/374 (52%), Gaps = 13/374 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + +AL+ G +Q A L L +DVL +TGSGKT+AFGLAL L Sbjct: 90 MPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTA 146 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R + A PLAL + PTRELA QV L + +A +GG+S+ R+ L+ GA Sbjct: 147 GRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQASALRGGAE 206 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185 +VV TPGRL D I + + + VLDEAD+M D+GF + +LD +P +RML F Sbjct: 207 VVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNPDGQRML-F 265 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + Y KD V ++ + +++ + V +D+ I G Sbjct: 266 SATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG-- 323 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ +V + T L + AL G SQ +R+ L + G+ V +AT+VAA Sbjct: 324 RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVLVATNVAA 383 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + +L+LV++ + ++ ++ LHR GRT RAG G V ++ N +R RL +A + Sbjct: 384 RGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAGI 443 Query: 366 SVVWEPAPSVEAIR 379 + P V +R Sbjct: 444 T------PQVTQVR 451 >gi|72392369|ref|XP_846985.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927] gi|62359340|gb|AAX79779.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei] gi|70803015|gb|AAZ12919.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261330174|emb|CBH13158.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei gambiense DAL972] Length = 569 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 195/367 (53%), Gaps = 8/367 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P I +A + GY + T +Q L +D++ A+TGSGKT+ F + A ++A+ Sbjct: 82 PDTIHQAFIDLGYKSPTPIQSIAWPILLNSRDLVGVAKTGSGKTMGFMVPAALHIMAQPP 141 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126 P+AL +APTRELAVQ+ E + + + C+ GG + R L+ G H Sbjct: 142 -IRVGEGPIALVLAPTRELAVQIEEETRKVLRRVPTITTACLYGGTPKGPQIRALRAGVH 200 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 + + TPGRL D + + N+ + +VLDEAD MLD+GF I I K R+ LMFS Sbjct: 201 VCIATPGRLIDLLEIRAANLLRVTFLVLDEADRMLDMGFEVQIRKICQQIRKDRQTLMFS 260 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I LA ++Q+D +RV++ SE+ ++D+ +V D+ + IL+ G + Sbjct: 261 ATWPQEIRNLAASFQRDFIRVHVGSEDLIANADVTQHVSVVEDYDKQRRLEEILQKVGKQ 320 Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 ++F T+ + L + V+A+ G+ Q +R L R V +ATDVA Sbjct: 321 RVLIFVKTKRTADSLHHSLQRLIGGSVMAIHGDKEQSQRDYVLDRFRRDERSVLVATDVA 380 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQNMQRRAERLF 360 ARG+D+ +L++VI+ ++ +N E+ +HR GRTGRAG++G + + P R + Sbjct: 381 ARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYTFVSGADPSKTVRDLIDIL 440 Query: 361 REANVSV 367 R AN + Sbjct: 441 RRANQEI 447 >gi|281345231|gb|EFB20815.1| hypothetical protein PANDA_010757 [Ailuropoda melanoleuca] Length = 404 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 107/323 (33%), Positives = 182/323 (56%), Gaps = 7/323 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL +APT Sbjct: 60 SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQALILAPT 113 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D IR + Sbjct: 114 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS 173 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + + D Sbjct: 174 LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTD 233 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 +R+ + + I V V + + + + ++ A++FC+T+ V T+ Sbjct: 234 PIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 293 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I+ +L Sbjct: 294 KMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP 353 Query: 323 SNPENLLHRSGRTGRAGRKGMSV 345 +N E +HR GR+GR GRKG+++ Sbjct: 354 NNRELYIHRIGRSGRYGRKGVAI 376 >gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] Length = 609 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 125/353 (35%), Positives = 190/353 (53%), Gaps = 17/353 (4%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 + + E I + +GEA ER + ++QE L L +DV+ A+TG+GKT+ FG+ L Sbjct: 57 LGVREEIVRALGEAGIERAF----AIQELTLPLALAGEDVIGQARTGTGKTLGFGIPLLQ 112 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 ++ D P AL + PTREL +QV +L V V GG + Sbjct: 113 RVITPGD-----GTPQALVVVPTRELCLQVTHDLTDASKHMDVRVLAIYGGRPYEPQIAA 167 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G +VVGTPGRL D + L + ++++VLDEADEMLDLGF DIE +L P +R Sbjct: 168 LRKGVDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDER 227 Query: 181 RMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAI 235 + ++FSAT+ I TLA+ + Q VR H + YRA + D+ + Sbjct: 228 QTMLFSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHAL---DKVELL 284 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +L+ +++F T+ + + +AE F V A+ G+L Q R AL+ R G+ Sbjct: 285 ARVLQARDRGLSMIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKI 344 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V +ATDVAARGID+ + V++ + + + +HR GRTGRAGR G++V ++ Sbjct: 345 DVLVATDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLV 397 >gi|75674512|ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] gi|74419382|gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] Length = 476 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 178/338 (52%), Gaps = 1/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+E Y+ T +Q + L +D++ AQTG+GKT AF L + LL + Sbjct: 19 ISRALAEENYLTPTPIQAQTIPIALTGRDLVGIAQTGTGKTAAFALPILHRLLQNRIKPQ 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P S + L ++PTREL+ Q+ + A+ IGGV + R+ R + +G ++V Sbjct: 79 PKSCRV-LVLSPTRELSGQILENFNAYGRHLRLTSALAIGGVPMGRQVRAVMHGVEVMVA 137 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ GL + ++ +VLDEAD MLD+GF DI ++ P KR+ L FSAT+ Sbjct: 138 TPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPAKRQTLFFSATMP 197 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA +D RV + + I R + V + + + +L+ A++F Sbjct: 198 KDIAELANQMLRDPARVAVTPVSSTVDRITQRIIQVDHAGKAAFLAQLLKQEPVNRALIF 257 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K LA+ + A+ G SQ R L R G R +ATD+AARGID+ Sbjct: 258 TRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAEFRAGEIRTLVATDIAARGIDV 317 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V++ +L + PE +HR GRT RAG G ++ ++ Sbjct: 318 DGISHVVNFDLPNVPETYVHRIGRTARAGTDGAAISLV 355 >gi|307169387|gb|EFN62107.1| Eukaryotic initiation factor 4A-III [Camponotus floridanus] Length = 402 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +A+ +L + L Sbjct: 48 GFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQSLDTQ------VRETQVL 101 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 102 VLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 161 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ + L +K +VLDE+DEML+ GF++ I + P ++++ SAT+ I + Sbjct: 162 IKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTS 221 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 222 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 281 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER N ++ R G++RV I TDV ARGID+ + LVI Sbjct: 282 DWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 341 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+S+ Sbjct: 342 NYDLPNNRELYIHRIGRSGRFGRKGVSI 369 >gi|218188673|gb|EEC71100.1| hypothetical protein OsI_02884 [Oryza sativa Indica Group] Length = 593 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 196/355 (55%), Gaps = 24/355 (6%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDR 68 +A+ + GY +T VQEA L L+ KDVL A+TG+GKTVAF L L A D+ Sbjct: 138 KAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQ 197 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125 P+ L + PTRELA+QV E + L Y ++ + V V IGG + +E+R +Q N Sbjct: 198 LRPSIN--LLVMCPTRELAIQVAVEAKKLLKYHRS-LGVQVVIGGTRLTQEQRSMQANPC 254 Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 I+V TPGRL DH+ G + +K +VLDEAD +LD+GFR DIE I+ S PK+R+ Sbjct: 255 QILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVPKERQT 314 Query: 183 LMFSATISPAI-----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 L+FSAT+ + + KNY+ + + H+ + ++ L + + + Sbjct: 315 LLFSATVPEEVRQISHIAMKKNYK--FINTVKDGDEETHAQVSQMFMIAPLDLHFSILYD 372 Query: 238 ILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 +L+ H A++A I+FC+T ++L++ + + SQ R+ R Sbjct: 373 VLKKHVAEDADYKVIIFCTTAMVTKLVAEILSQLRLNIREIHSRKSQSARTKVSDEFRKS 432 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 R + +++DV+ARG+D PD+ LVI + ++ + +HR GRTGR G++G + ++ Sbjct: 433 RGLILVSSDVSARGVDYPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLL 487 >gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2] gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2] Length = 445 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++++GY + +Q + L KDV+ +AQTG+GKT F L + L ++ Sbjct: 12 ILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL-SKGKPAG 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A AL + PTRELA QV +E + + V GGV ++ + L+ G I+V Sbjct: 71 PNQA-RALILTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRLRKGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI+ IL + PK R+ L+FSAT S Sbjct: 130 TPGRLLDLFNQNAIKFDQLEILVLDEADRMLDMGFIHDIKRILKALPKNRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N + + V + + +++ + ++F Sbjct: 190 NEIRQLAKGLVNNPVEISVTPRNTTATTVTQWIYPVDKGRKAALLTKLIKENDWSQVLIF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R TK L + A+ G SQ R+ AL +DG + +ATD+AARGID+ Sbjct: 250 SRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQALVATDIAARGIDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + E+ +HR GRTGRAG G +V ++ Sbjct: 310 DQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLV 347 >gi|120610479|ref|YP_970157.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax citrulli AAC00-1] gi|120588943|gb|ABM32383.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1] Length = 599 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 181/343 (52%), Gaps = 1/343 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ E+GY T +Q + L D+L AQTG+GKT AF L + L + Sbjct: 7 NLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRL-TQ 65 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 PA AL + PTRELA QV L V V GGV ++ + ++ G Sbjct: 66 GGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDRIKRGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + L++S ++ +VLDEAD MLD+GF D++ +L P+ ++ L+F Sbjct: 126 DILVATPGRLLDLQQQGFLDLSRVEILVLDEADRMLDMGFIHDVKKVLALVPRDKQSLLF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S I LA K+ + + N I V + +++I++ H Sbjct: 186 SATFSDEIRELAGTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQQHNWS 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + + L ++ +AL G SQ R+ AL + G R +ATD+AA Sbjct: 246 QVLVFTRTKFGANNVAEFLTKNGVTAMALHGNKSQSARTQALAGFKSGDIRALVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ +L V++ E+ + PE+ +HR GRTGRAG G +V ++ Sbjct: 306 RGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLV 348 >gi|283783572|ref|YP_003374326.1| DEAD/DEAH box helicase [Gardnerella vaginalis 409-05] gi|283441454|gb|ADB13920.1| DEAD/DEAH box helicase [Gardnerella vaginalis 409-05] Length = 607 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 200/388 (51%), Gaps = 25/388 (6%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + E L G +Q+A L L+ ++L +TGSGKT+AF + L + L AEN Sbjct: 158 VPEPLVEVLRADGKTTAFPIQQATLPDSLQGANILGRGRTGSGKTLAFSIPLVARL-AEN 216 Query: 67 ---------DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113 +R S S AP A+ +APTREL Q+ + L A G+ GGV Sbjct: 217 FVDLIHSDKNRKSRESSEIPAPRAIILAPTRELVHQIDDVIAPLAAAYGMRTVTVYGGVR 276 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 R+ L+ GA IV+ PGRL D +R L + + VLDEADEM D+GF + +L Sbjct: 277 YQRQVSQLKQGAQIVLACPGRLEDLLRQGALTLEKVMVSVLDEADEMADMGFLPAVTRLL 336 Query: 174 DS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 + +P +RML+ SAT+ ++TL + + +AV + + Q + + V+ D+ Sbjct: 337 EQVAPDGQRMLL-SATLDKQVSTLVERFLPNAVVHAVDDADCQVDTMTHHIFAVSAGDK- 394 Query: 233 NAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 +LR G K +I F T+ K + V L G LSQ +R L + Sbjct: 395 ---YEVLRKLASGKKRSIFFTRTKYQAKNMAKKFVQQGIPAVDLQGNLSQNQRDRHLAVF 451 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +G RV +ATDVAARGID+ D+ LV+ E +P++ LHRSGRT RAG +G V ++ Sbjct: 452 AEGLVRVLVATDVAARGIDISDVALVVQTEPPEDPKSFLHRSGRTARAGEEGDVVTLVLP 511 Query: 351 NMQRRAERLFREANVSVVWE---PAPSV 375 N +R A + R+A + E P+ SV Sbjct: 512 NQKRAAHMMLRKAGIHAKAEDVSPSSSV 539 >gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026] gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412] gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302] gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1] gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143] gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026] gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412] gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302] gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1] gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143] Length = 454 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + + +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|163792426|ref|ZP_02186403.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium BAL199] gi|159182131|gb|EDP66640.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium BAL199] Length = 446 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 120/327 (36%), Positives = 173/327 (52%), Gaps = 1/327 (0%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY T +Q A + P L +D++ AQTG+GKT AF L + L A ++ P AP AL Sbjct: 23 GYTTPTPIQVAAIPPLLAGRDLIGLAQTGTGKTAAFTLPMLHRLAAAGEKRIP-KAPRAL 81 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELAVQ+ +E G+ A+ GGVS + LQ G +++ TPGRL D Sbjct: 82 ILTPTRELAVQIAGVVETFGRSIGLRHALVHGGVSARPQAVALQRGVEVMIATPGRLLDL 141 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I + + + ++ VLDEAD MLDLGF D++ I P R+ +FSAT+ +I L + Sbjct: 142 INQRAVFLDKVEYFVLDEADRMLDLGFVRDVKRIAALVPANRQTALFSATMPQSIIELTE 201 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + ++ RV I + I + VA +++ + +L AIVF T+ V Sbjct: 202 SLLRNPERVQITPTSTPIERIQQSVMFVARANKRTLLARLLGAPDVSRAIVFVRTKHGVD 261 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 R L L G SQ R AL + GR + +ATD+AARGID+ ++ VI+ Sbjct: 262 RVVDSLRRDGLTAEGLHGNKSQGARQTALDAFKRGRLPILVATDIAARGIDVHEISHVIN 321 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345 +L PE +HR GRT RAG G++V Sbjct: 322 LDLPDVPETYIHRIGRTARAGAGGIAV 348 >gi|26991657|ref|NP_747082.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440] gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida KT2440] Length = 626 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + +YA+ +V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G ++++H++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT LA + R+ + N I+ R + S + + +++ + Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L + A+ G SQ R+ AL + RV +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353 >gi|254282473|ref|ZP_04957441.1| dead/deah box helicase domain protein [gamma proteobacterium NOR51-B] gi|219678676|gb|EED35025.1| dead/deah box helicase domain protein [gamma proteobacterium NOR51-B] Length = 433 Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 189/336 (56%), Gaps = 3/336 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ ++GY T +Q+ + LR KDVL AQTG+GKT F L L L + + S Sbjct: 15 AVEKKGYSEATPIQQQAIPLVLRGKDVLAGAQTGTGKTAGFTLPLLQQLQNLH-KPGHKS 73 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + A AV GGVS++ +++ L G I+V TPG Sbjct: 74 FPRVLVLTPTRELAAQVQESVRDYGAFLPFRSAVIFGGVSINPQKQKLIRGVDIIVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH++ + ++++ ++ +VLDEAD MLD+GF DI+ I+ PK+R+ L+FSAT S I Sbjct: 134 RLLDHVQQRSVDLTRIETLVLDEADRMLDMGFIHDIKRIVKIIPKQRQTLLFSATFSREI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCS 252 LA + + + + +N +D+ + V R +++ + + + ++F Sbjct: 194 KGLAAEFLRSPEEIQVTPQN-TATDLVTQVVYPVDKKRKRELLSQQIGENNWQQVLIFTR 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ S +R + L + A+ G SQ R+ AL ++G R +ATD+AARGID+ Sbjct: 253 TKHSANRLAEQLDKDGITAAAIHGNKSQGARTRALADFKNGTIRALVATDIAARGIDIQK 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ EL + E+ +HR GRT RAG++G ++ ++ Sbjct: 313 LPHVVNFELPNTAEDYVHRIGRTARAGQEGSAISLV 348 >gi|308050173|ref|YP_003913739.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] gi|307632363|gb|ADN76665.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] Length = 499 Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 180/342 (52%), Gaps = 10/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAEN 66 + A++++GY + +Q + L KDV+ +AQTG+GKT F L + L A + Sbjct: 12 LARAVADKGYREPSPIQAQAIPAILAGKDVMAAAQTGTGKTAGFTLPMLQNLSRGTRARS 71 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +R AL + PTRELA QV ++ + V GGVS++ + + L+ GA Sbjct: 72 NRVR------ALVLTPTRELAAQVAESVQTYGQNLPLRSVVVFGGVSINPQMQALRRGAD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL D + L+ +VLDEAD MLD+GF DI IL PK+R+ L+FS Sbjct: 126 VLVATPGRLLDLFSQNAVKFEDLELLVLDEADRMLDMGFIRDIRKILALLPKRRQNLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LA+ V V+++ N + R V + I ++R H Sbjct: 186 ATFSGEIRELARGLLNQPVEVDVSPRNSTARTVVQRLHPVDKGRKPALISKLIREHNWHQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++F T+ +R + L Q A+ G SQ R+ AL +DG + +ATD+AAR Sbjct: 246 VLIFTRTKHGANRLAQKLERDGIQAAAIHGNKSQGARTRALAGFKDGTVQALVATDIAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ +L E+ +HR GRTGRAG +G ++ ++ Sbjct: 306 GLDIHQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLV 347 >gi|159036117|ref|YP_001535370.1| DEAD/DEAH box helicase domain-containing protein [Salinispora arenicola CNS-205] gi|157914952|gb|ABV96379.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola CNS-205] Length = 548 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 124/348 (35%), Positives = 189/348 (54%), Gaps = 11/348 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+ G ++QE L LR D++ A TG+GKT+ FG+ L +LA + Sbjct: 38 DALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLEQVLAPAEGGD-- 95 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTREL +QV ++L+ + GV V GGV+ + L++G I+VGTP Sbjct: 96 GTPQALVVVPTRELGIQVAKDLQAAGSTRGVRVLPIYGGVAYEPQIEALRSGVEILVGTP 155 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + K L + ++A+VLDEAD MLDLGF DD+E IL P+ R+ ++FSAT+ Sbjct: 156 GRLLDLAKQKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILPEDRQTMLFSATMPDP 215 Query: 193 ITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 I L++ + + V ++ + Q + YR + ++ + IL+ G Sbjct: 216 IVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSL---NKIEIVARILQARGRGLT 272 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++F T+ + R L F V A+ G+L Q R AL+ R G+ +ATDVAARG Sbjct: 273 MIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLVATDVAARG 332 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ID+ + V++ + + + HR GRTGRAG G++V FV +M R Sbjct: 333 IDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPR 380 >gi|260790063|ref|XP_002590063.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae] gi|229275251|gb|EEN46074.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae] Length = 403 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 181/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +DV+ AQ+G GKT F +++ L + AL Sbjct: 49 GFEKPSAIQQRAIKPIVKGRDVIAQAQSGVGKTATFSISILQCLDIQMREVQ------AL 102 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + + L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 103 VLSPTRELATQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDYGQHVVSGTPGRVFDM 162 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 163 IRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTT 222 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 223 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 282 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER ++ R G +RV I TDV ARGID+P + L+I Sbjct: 283 DWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLITTDVWARGIDVPQVSLII 342 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 343 NYDLPNNRELYIHRIGRSGRFGRKGVAI 370 >gi|195028030|ref|XP_001986885.1| GH21617 [Drosophila grimshawi] gi|193902885|gb|EDW01752.1| GH21617 [Drosophila grimshawi] Length = 524 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 138/392 (35%), Positives = 194/392 (49%), Gaps = 50/392 (12%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + + L++ G T +QE + L KD + +A+TGSGKT AF L + L E Sbjct: 18 LAKQLTKLGLKGATPIQENCIPAILSGKDCIGAAKTGSGKTFAFALPILERLSEE----- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P S AL + PT ELA Q+ + GV V V GG E + L HIVV Sbjct: 73 PVSH-FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQRPHIVVA 131 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 PGRL DH+ G + +LK +V+DEAD ML+ F + + I PK R+ L FSAT+ Sbjct: 132 MPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKSRQNLFFSATM 191 Query: 190 SPAITTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILR 240 K++ K++ IA E Q SD+ D R +L A DRD +V LR Sbjct: 192 --------KDFMKESSIFPIAKDCLEWSQDSDVATVDTLDQRYLLCADYDRDMVLVESLR 243 Query: 241 YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 + +N ++F +T+ + LA + V L G + Q+ER AL + R Sbjct: 244 KYREENENSNVMIFTNTKKYCQLLSMTLANMEIENVCLHGFMRQKERVAALSRFKSNHIR 303 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM-- 352 IATDVAARG+D+P ++LVI+ L P+ +HR GRT RAGRKG+ S+F P+++ Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLEL 363 Query: 353 ------------------QRRAERLFREANVS 366 QR ER+F + NVS Sbjct: 364 LGAIEAEINTKLTEHPIDQRMVERIFMQVNVS 395 >gi|23308803|ref|NP_599999.2| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|62389660|ref|YP_225062.1| ATP-dependent RNA helicase protein [Corynebacterium glutamicum ATCC 13032] gi|21323537|dbj|BAB98164.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] gi|41324995|emb|CAF19476.1| PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 424 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 122/341 (35%), Positives = 180/341 (52%), Gaps = 4/341 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL G ++QE L L D + A+TG GKT FG+ L + D Sbjct: 19 ITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDRVFDSADVAE 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELAVQVG +L+ + + GG + L+ G +VVG Sbjct: 79 TDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDALKVGVDVVVG 138 Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D H RG L++ + +VLDEADEMLDLGF DIE IL + + + ++FSAT+ Sbjct: 139 TPGRLLDLHKRG-ALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQTMLFSATM 197 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA 247 AI TLA+++ V + + + + R V+ D++ IL+ Sbjct: 198 PGAILTLARSFLNKPVHIRAETSDASATHKTTRQVVFQAHKMDKEAITAKILQSKDRGKT 257 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + ++ + LA F V ++ G++ Q R +L R G+ + +ATDVAARG Sbjct: 258 IIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDILVATDVAARG 317 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ID+ D+ VI+ + +P +HR GRTGRAG G +V ++ Sbjct: 318 IDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLV 358 >gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM 18170] Length = 418 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 202/378 (53%), Gaps = 8/378 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + + +AL + T VQE + L +D++ AQTG+GKT A+ L + Sbjct: 1 MKFTELNLEESVLDALDAMNFKECTPVQEQTIPVILEGRDLIGVAQTGTGKTAAYLLPVI 60 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHR 116 + L + PA A + +APTRELA Q+ +++E + Y VA+ G G+ + Sbjct: 61 NQL---SKGGYPADAINCVIMAPTRELAQQIDQQMEGFSYFMPVSSVAIYGGNDGIRFEQ 117 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 E++ L GA +V+ TPGRL H+ +++S + +LDEAD MLD+GF DDI I+ Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 PK+R+ +MFSAT+ I LA++ D V +A ++ I A + + + I Sbjct: 178 PKERQTIMFSATMPAKIQQLAQSILHDPAEVKLAV-SKPADKIIQAAYICYEAQKLGIIE 236 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 ++ R + I+F S++ V TK L V + +L Q +R + R+GR Sbjct: 237 SLFRQQEPERVIIFASSKLKVKEVTKALKRLKLNVGEMHSDLEQSQRDEIMHEFRNGRIN 296 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 + +ATD+ ARGID+ D+ LVI+ ++ + E+ +HR GRT RA G ++ + +N Q R Sbjct: 297 MLVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSENEQTRF 356 Query: 357 ERLFREANVSVVWEPAPS 374 +++ + P P+ Sbjct: 357 KQIEDFLGKEIYKLPVPA 374 >gi|152965210|ref|YP_001360994.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans SRS30216] gi|151359727|gb|ABS02730.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans SRS30216] Length = 530 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 187/363 (51%), Gaps = 3/363 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +PQ + + L+ G V+ +Q A L + +DVL +TGSGKT+AF L L T +A + Sbjct: 82 VPQPLVDVLAATGVVSPFPIQTATLPDSMAGRDVLGRGRTGSGKTIAFALPLV-TRVAAS 140 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R A P +L + PTRELA QV + L G+ V GGV + + L+ G Sbjct: 141 SRPRRAGRPRSLVLVPTRELANQVAATITPLAKALGLRTTVVFGGVGQNPQVSALREGVD 200 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ PGRL D IR ++ ++ VLDEAD M DLGF ++ +LD++P + L+FS Sbjct: 201 VLIACPGRLEDLIRQGHCHLDAVEVTVLDEADHMADLGFLPGVKRLLDATPAGGQRLLFS 260 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ I L K Y + V ++ S +++ VL +D N +V L G Sbjct: 261 ATLDNGIDVLVKRYLSEPVVHSVDPAVAPVSTMEHH-VLEVGADGKNTLVREL-ASGQGR 318 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++F T+ S + K L V L G LSQ R L DG +V ATD+AAR Sbjct: 319 TVLFTRTKHSAKKLAKQLTAAGIPAVDLHGNLSQNARERNLAAFSDGSVKVLCATDIAAR 378 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GI + D+ LV+H + + + LHRSGRT RAG G+ V V + + L R+A +S Sbjct: 379 GIHVDDVSLVVHVDPPTEHKAYLHRSGRTARAGAGGLVVTVATPDQRGDVRTLARQAGIS 438 Query: 367 VVW 369 W Sbjct: 439 PQW 441 >gi|291446333|ref|ZP_06585723.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998] gi|291349280|gb|EFE76184.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998] Length = 507 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 197/375 (52%), Gaps = 13/375 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + +AL+ G +Q A L L +DVL +TGSGKT+AFGLAL L Sbjct: 139 EMPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 195 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R + A PLAL + PTRELA QV L + +A +GG+S+ R+ L+ GA Sbjct: 196 AGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQASALRGGA 255 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184 +VV TPGRL D I + + + VLDEAD+M D+GF + +LD +P +RML Sbjct: 256 EVVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNPDGQRML- 314 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ + L + Y KD V ++ + +++ + V +D+ I G Sbjct: 315 FSATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG- 373 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F T+ +V + T L + AL G SQ +R+ L + G+ V +AT+VA Sbjct: 374 -RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVLVATNVA 432 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGI + +L+LV++ + ++ ++ LHR GRT RAG G V ++ N +R RL +A Sbjct: 433 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAG 492 Query: 365 VSVVWEPAPSVEAIR 379 ++ P V +R Sbjct: 493 IT------PQVTQVR 501 >gi|224031067|gb|ACN34609.1| unknown [Zea mays] Length = 414 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 191/355 (53%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 60 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGSGVHVVVGTPGRVFDM 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV + PA Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVLIEELPA 408 >gi|148550055|ref|YP_001270157.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas putida F1] gi|148514113|gb|ABQ80973.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1] Length = 627 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + +YA+ +V+ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G ++++H++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT LA + R+ + N I+ R + S + + +++ + Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L + A+ G SQ R+ AL + RV +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353 >gi|307135861|gb|ADN33729.1| helicase [Cucumis melo subsp. melo] Length = 413 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 188/355 (52%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L +++ VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + +R + + NV + PA Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVIIEELPA 407 >gi|218261592|ref|ZP_03476346.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii DSM 18315] gi|218223947|gb|EEC96597.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii DSM 18315] Length = 419 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 174/335 (51%), Gaps = 3/335 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69 I +AL + Y T +Q + L D+L AQTG+GKT AF + + + + + R Sbjct: 12 IRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPIIQKIEEQISSRC 71 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL + PTRELA+Q+G T V V GGV + L+ G +++ Sbjct: 72 KPGIK--ALVLTPTRELAIQIGESFTAYGCYTHVKHTVIFGGVGQKPQTDALERGVDVLI 129 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + + + L+ VLDEAD MLD+GF DI+ IL PKKR+ L FSAT+ Sbjct: 130 ATPGRLLDLLSQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQSLFFSATM 189 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 P I LA + +V + + ID V ++ N + N+L ++ +V Sbjct: 190 PPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLEDRSLESVLV 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + +VL + A+ G+ Q R AL +D RV IATD+A+RGID Sbjct: 250 FTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRVLIATDIASRGID 309 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 + L VI+ +L + PE +HR GRTGRAGR G++ Sbjct: 310 VDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIA 344 >gi|164657065|ref|XP_001729659.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966] gi|159103552|gb|EDP42445.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966] Length = 560 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 9/367 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEN 66 P I +++ G+ +++Q L +D++ A+TGSGKT+ F AL S L + Sbjct: 143 PDYIMREINKLGFTEPSAIQSQAWPLALSGRDLVAIAETGSGKTIGF--ALPSILHIKAQ 200 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 P+AL +APTRELAVQ+ E + + V GGV ++ R LQ GA Sbjct: 201 APLQYGDGPIALILAPTRELAVQIQNECQRFGSACRVRTTSVYGGVPKGQQIRSLQRGAE 260 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ TPGRL D + N+ + +V+DEAD MLD+GF I I++ R+ LMFS Sbjct: 261 IVIATPGRLIDMMEIGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVEQIRPDRQTLMFS 320 Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT + +A ++ D V+VNI S E + ++ + D+ ++ L + + Sbjct: 321 ATWPKEVQRMASDFLNDYVQVNIGSMELAANHNVKQVIEVCTEFDKRGRLIKHLEHISQE 380 Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 N I+F T+ + TK L + + +A+ G+ Q ER L+ + G + + +AT V Sbjct: 381 NGKVIIFTGTKRAADDLTKFLRQDGWPGLAIHGDKQQDERDWVLREFKSGNSPIMVATAV 440 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---F 360 A+RG+D+ D+ VI+++ +N E+ +H+ GRTGRAGRKG+++ + A L Sbjct: 441 ASRGLDVKDISYVINSDFPTNTEDYIHQIGRTGRAGRKGVAITFFTSENSKSARDLVGIL 500 Query: 361 REANVSV 367 REAN V Sbjct: 501 REANQEV 507 >gi|322788219|gb|EFZ14001.1| hypothetical protein SINV_14366 [Solenopsis invicta] Length = 423 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +A+ +L + L Sbjct: 69 GFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQSLDTQ------VRETQVL 122 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 123 VLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 182 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ + L +K +VLDE+DEML+ GF++ I + P ++++ SAT+ I + Sbjct: 183 IKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTS 242 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 243 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 302 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER N ++ R G++RV I TDV ARGID+ + LVI Sbjct: 303 DWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 362 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+S+ Sbjct: 363 NYDLPNNRELYIHRIGRSGRFGRKGVSI 390 >gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451] gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451] Length = 422 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 193/379 (50%), Gaps = 10/379 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 LS+ G VN T +Q+ + L+ KDVL AQTG+GKT AFGL L + + S Sbjct: 20 TLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWVREENS 79 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA QV ++ T + + GG S+ + L+ G I++ TP Sbjct: 80 KEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A +D V V + N + V + + ++ + +VF Sbjct: 200 IKAVAYRIMRDPVEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKVGKVRALIATDVAARGLDIAQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368 LE V++ ++ E+ +HR GRTGRAG G++V ++ + + + E + R N + Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQLEAIERLLNTRLPQEWL 379 Query: 369 --WEPAPSVEAIRERDAQR 385 +EP+P +RE ++ R Sbjct: 380 KGFEPSP---VVREENSPR 395 >gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM 12042] gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM 12042] Length = 424 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 192/357 (53%), Gaps = 8/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY T +Q+ + P L +D+L AQTG+GKT AF L + L+ + + A AL Sbjct: 20 GYTTPTKIQQKAIPPVLEGRDLLGLAQTGTGKTAAFALPILDQLMKQPQKGKRAIK--AL 77 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELA+Q+ + + V GGV + L+ GA I++ TPGRL D Sbjct: 78 VLTPTRELAIQIVDNFQLYGQGLPLKTVVIFGGVKQGAQVDQLKKGADILIATPGRLLDL 137 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 + + L++S ++ VLDEAD MLD+GF D++ + K++ L+FSAT+ I LA Sbjct: 138 VGQRLLDLSQVEIFVLDEADRMLDMGFIHDVKRVSALLVNKKQTLLFSATMPKEIAGLAA 197 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + K+ VRV + I+ R V S++++ ++ +L+ +A+VF T+ Sbjct: 198 SLLKNPVRVEATPVSTPIEKIEQRVYYVEKSEKNDLLLRVLKKEEVTSALVFTRTKHEAD 257 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 R + L + Q +A+ G SQ R AL ++ +V +ATD+AARGID+ L VI+ Sbjct: 258 RVVRFLTKGHVQAMAIHGNKSQNARQKALAAFKNHEIQVLVATDIAARGIDIEKLSHVIN 317 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR----AERLFREANVSVVWEP 371 + + E +HR GRT RAG++G+++ QN +R E+L R + VV +P Sbjct: 318 YNIPNISETYVHRIGRTARAGQEGIAISFC-QNDERAYLKDIEKLIR-YTIPVVKDP 372 >gi|28211793|ref|NP_782737.1| ATP-dependent RNA helicase [Clostridium tetani E88] gi|28204235|gb|AAO36674.1| ATP-dependent RNA helicase [Clostridium tetani E88] Length = 370 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 107/313 (34%), Positives = 173/313 (55%), Gaps = 12/313 (3%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWL 97 DV+ AQTG+GKT+AF LL + SP + L + PTRELA+Q+ E L Sbjct: 41 DVIAEAQTGTGKTLAF-------LLPMFENMSPNINTIQGLIVTPTRELAIQITEEAMKL 93 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + + GG + + L+ H+V+ TPGRL DH+ +++ +LK +VLDEA Sbjct: 94 NESKDLNILSAYGGKDIGSQLNKLKGNIHLVIATPGRLLDHLDRNTIDLKNLKTLVLDEA 153 Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217 D+ML +GF++++E I+ + K R+ L FSAT++ ++ LA Y D + I E Sbjct: 154 DQMLLMGFKNEVETIIKHTSKNRQTLCFSATMNSSVKKLAYKYMDDPKLITIQKEEITLK 213 Query: 218 DIDYRAVLVALSDRD--NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275 +I + VL+ +DR+ + + +L AI+FC T+ V + L + + L Sbjct: 214 NI--KQVLIETTDRNKLDDLCKVLNETNPFMAIIFCRTKRRVDKLEMDLYQRGYNCKKLH 271 Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335 G+L+Q +R ++ ++ + + IATDVAARG+D+ + + + ++ N EN +HR GRT Sbjct: 272 GDLTQSKREKVMKDFKNTKIQYLIATDVAARGLDITGVTHIYNYDIPENTENYIHRIGRT 331 Query: 336 GRAGRKGMSVFVI 348 GRAG KG + I Sbjct: 332 GRAGEKGYAYLFI 344 >gi|149633893|ref|XP_001512924.1| PREDICTED: similar to helicase like protein 2 [Ornithorhynchus anatinus] Length = 651 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 186 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENG 244 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 245 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCH 304 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P+K R Sbjct: 305 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPQKGIRHT 364 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 365 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 424 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 425 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 484 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 485 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 532 Query: 362 EANVSVV 368 E N+++ Sbjct: 533 ERNINIT 539 >gi|300715940|ref|YP_003740743.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661] gi|299061776|emb|CAX58892.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661] Length = 480 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 197/370 (53%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q + L +D++ SAQTG+GKT F L + L + N Sbjct: 15 AVAEQGYDEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPVLQLLSSHNPHPKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G ++ + V GGVS++ + L++G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVQDYSKYLDLRSLVVFGGVSINPQMMKLRSGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D L++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + V++A N I +V + + ++ + +VF T Sbjct: 195 KGLAEKLLHNPEEVSVARRNTASEQITQHVHMVDKKRKRELLSFLIGRDNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + A+ G SQ R+ AL ++G+ RV +ATD+AARGID+ +L Sbjct: 255 KHGANHLAEQLNKDGITSAAIHGNKSQGARTRALSDFKEGKIRVLVATDIAARGIDISEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQ-NMQRRAERLF-REANVSVV- 368 V++ EL + PE+ +HR GRTGRA G +S+ + + + R ER+ RE + Sbjct: 315 PHVVNFELPNVPEDYVHRIGRTGRAAATGEALSLVCVDELKLLRDIERVLKREIPRMAIE 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC 6260] Length = 397 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 108/346 (31%), Positives = 193/346 (55%), Gaps = 11/346 (3%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE++ P+++ + + G+ +++Q + +R +D + AQ+G+GKT F + + S Sbjct: 26 FESMNLKPELL-KGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILS 84 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 ++ ++ AL ++PTRELA Q+ +E L V CIGG V + + Sbjct: 85 SIDTKSKDCQ------ALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKK 138 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 LQ G HI+ GTPGR+ D I+ + + H+K +VLDEADE+L GF++ I I + P Sbjct: 139 LQQGQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGA 198 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNIL 239 ++++ SAT++P + + + D V++ + ++ I + D + + + ++ Sbjct: 199 QVVVVSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLY 258 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 A++FC+T+A V+ + + F V A+ G++ Q++R + ++ R G RV I Sbjct: 259 DNLTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLI 318 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +TDV ARGID+ + LVI+ +L + EN +HR GR+GR GRKG ++ Sbjct: 319 STDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAI 364 >gi|226246544|ref|NP_001139665.1| vasa protein [Strongylocentrotus purpuratus] gi|223056284|gb|ACM80369.1| vasa [Strongylocentrotus purpuratus] Length = 766 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 117/334 (35%), Positives = 181/334 (54%), Gaps = 8/334 (2%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPL 76 Y T VQ+ + +D++ AQTGSGKT AF L + + ++ F+ PL Sbjct: 333 YAKPTPVQKYGMPIISCGRDLMACAQTGSGKTAAFLLPIITNMITHGGCISTFNVIQEPL 392 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 AL ++PTRELA+Q+ E T + V GG SV + R+ Q G I+V TPGR+ Sbjct: 393 ALIVSPTRELAIQIYNEARKFCRGTTIRPVVVYGGTSVSHQMRECQKGCSILVATPGRMH 452 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFSATISPA 192 D + + + LK ++LDEAD MLD+GF DI+ +++ P K R+ LMFSAT Sbjct: 453 DFVTRGYIGLGKLKFLILDEADRMLDMGFGPDIQRLIEHPHMPAKGDRQTLMFSATFPNE 512 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFC 251 + A Y D + + + SDI+ R V D+ + ++ ILR + +VF Sbjct: 513 VQEKAGEYLNDYLFLTVGRVGGAASDIEQRVFSVGQFDKRDKLMEILRDQKDDDRTLVFV 572 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 ST+ + +L++ F ++ G+ QQER AL+ + G+A + +AT VAARG+D+P Sbjct: 573 STKRNADFLASLLSQSEFPTTSIHGDRQQQEREEALRDFKTGKAPILVATSVAARGLDIP 632 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++ V++ +L S+ + +HR GRTGR G G S Sbjct: 633 GVKHVVNYDLPSDIDEYVHRIGRTGRVGNLGRST 666 >gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis] Length = 660 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 132/395 (33%), Positives = 204/395 (51%), Gaps = 39/395 (9%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65 + ++I + +S Y T VQ+ L L ++D++ AQTGSGKT AF + + + + + Sbjct: 226 LTEIIKQNISMARYDRPTPVQKYALPFILAKRDLMACAQTGSGKTAAFLVPILNQIYEQG 285 Query: 66 -------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 N R PL+L +APTRELA Q+ E + V V GG V + Sbjct: 286 PVQVKNNNPRGRNKQYPLSLILAPTRELATQIYEEARKFSYRARVRPCVVYGGADVVSQM 345 Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DS 175 RDL G H++V TPGRL D I RGK + + + K +VLDEAD MLD+GF I I+ D+ Sbjct: 346 RDLSRGCHLLVATPGRLADMIDRGK-IGLDYCKYLVLDEADRMLDMGFEPQIRRIVEEDN 404 Query: 176 SPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 P +R+ LMFSAT I LA+++ + + + + +I + V V+ D+ + Sbjct: 405 MPPTGQRQTLMFSATFPKEIQRLAQDFLDNYIFLAVGRVGSTSENITQKIVWVSEDDKRS 464 Query: 234 AIVNILRYHGAKNA----------------------IVFCSTRASVSRFTKVLAEHLFQV 271 +++IL G A +VF T+ + L H + V Sbjct: 465 FLLDILNAAGLDRATEANKDEKMAMGVPPRREESLTLVFVETKKGADALEEFLYRHGYPV 524 Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331 ++ G+ SQ+ER +AL++ R G+ + +AT VAARG+D+P ++ VI+ +L S+ E +HR Sbjct: 525 TSIHGDRSQREREDALRVFRSGQCPILVATAVAARGLDIPHVKHVINFDLPSDIEEYVHR 584 Query: 332 SGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363 GRTGR G G++ +NM R L +EA Sbjct: 585 IGRTGRMGNLGLATSFFNDKNRNMVRDLVELLQEA 619 >gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34] gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34] Length = 496 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 179/338 (52%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EA++++GY + +QE + L KDV+ +AQTG+GKT F L L L N R + Sbjct: 12 ILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLLERL--ANGRPA 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 ++ AL + PTRELA QVG + + AV GGV V+ + ++ GA ++V Sbjct: 70 RSNHVRALVLTPTRELAAQVGESVATYSKNLRLSSAVVFGGVKVNPQMLRMRKGADVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT S Sbjct: 130 TPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N+ + V + N + +L K +VF Sbjct: 190 DEIRELAKGLVSNPVEIDVNPRNQTARTVKQWICPVDQKKKPNLLTKLLNKRNWKQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ L A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 250 TKTKHGANKLATHLESRGISAAAIHGNKSQGARTKALANFKSGDIRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 310 EQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLV 347 >gi|225557690|gb|EEH05975.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus G186AR] Length = 487 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 118/325 (36%), Positives = 190/325 (58%), Gaps = 14/325 (4%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 +DV+ A+TGSGKT+AFG+ +L N S A+ I PTRELA+Q+ +L Sbjct: 108 RDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRIS-AVIITPTRELAMQIYDQL-VK 165 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + GV +A GG S +RR L+ A ++V TPGRL D + LN+ +K +VLDEA Sbjct: 166 FTPNGVGLACIYGGASKDDQRRALKK-ASVIVATPGRLKDFHSDESLNLKKVKYLVLDEA 224 Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI----AS 211 D MLD GF DI+ I+ + P +KR+ +MF+AT ++ LA + K+ V V I +S Sbjct: 225 DRMLDKGFEQDIKDIVSTMPSSRKRQTVMFTATWPISVRKLATTFMKEPVTVTIGGDLSS 284 Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAE 266 + R ++ I +V ++++ ++++L +Y +NA +VFC + +R + + Sbjct: 285 DIRANTRIKQIVEVVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKKEATRIERFIRS 344 Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326 F+V + G+++Q ER N+L + G V +ATDVAARG+D+P ++LV++ E Sbjct: 345 KGFKVAGIHGDMNQTERFNSLNAFKSGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVE 404 Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQN 351 + +HR GRTGRAG G+++ + +N Sbjct: 405 DYVHRIGRTGRAGSDGLAITMFTEN 429 >gi|242053635|ref|XP_002455963.1| hypothetical protein SORBIDRAFT_03g028100 [Sorghum bicolor] gi|241927938|gb|EES01083.1| hypothetical protein SORBIDRAFT_03g028100 [Sorghum bicolor] Length = 500 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 195/355 (54%), Gaps = 19/355 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ + GY +T VQEA L L+ KDVL A+TG+GKTVAF L L A P Sbjct: 112 KAIKDAGYERMTQVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEVLSA-----LPR 166 Query: 73 SAPL-ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129 S + L + PTRELA QV E + L + V V IGG + +E+R +Q N I+V Sbjct: 167 STSINLLVMCPTRELANQVAAEARKLLKYHRSLGVQVVIGGTRLPQEQRSMQANPCQILV 226 Query: 130 GTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 TPGRL DH+ G I +K +VLDEAD +LD+GFR DIE I+ PK+R+ L+FS Sbjct: 227 ATPGRLKDHLENTPGFSTRIKGVKVLVLDEADRLLDMGFRRDIEKIISFIPKERQTLLFS 286 Query: 187 ATISPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHG 243 AT+S + ++ ++D +N E + H+ ++ ++ L + ++L+ H Sbjct: 287 ATVSEEVRQISHLAMKRDYNFINTVQEGDEETHAQVNQTYMIAPLDLHFPILYDVLKKHV 346 Query: 244 AKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 A++A IVFC+T +VL++ + + SQ R+ R + + + Sbjct: 347 AEDAEYKVIVFCTTAMVTKLVAEVLSQLKLNIREIHSRKSQSARTKVSDEFRKSKGLILV 406 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353 ++DV+ARG+D PD+ LV+ L ++ E +HR GRTGR G++G + ++ P M Sbjct: 407 SSDVSARGVDYPDVTLVMQVGLPADREQYIHRLGRTGRKGKEGQGILLLAPWEMH 461 >gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3] Length = 501 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I +A Y T +Q + P L D++ AQTGSGKT AF + + + L + Sbjct: 89 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 147 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 148 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184 I++ TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P ++R + Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 321 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F T+A+ R + + F AL G+L+Q +R AL + + G+ + +ATDVA Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 381 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++V++ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427 >gi|307331747|ref|ZP_07610851.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger Tu 4113] gi|306882613|gb|EFN13695.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger Tu 4113] Length = 1097 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 185/346 (53%), Gaps = 10/346 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68 EAL G ++ +QE L L DV+ A+TG+GKT+ FGL L ++ D R Sbjct: 49 EALEAVGIMSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVVVSADVEAGR 108 Query: 69 FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AP AL + PTREL QV +L V V GG + + L+ G Sbjct: 109 AKPEQLTDAPQALVVVPTRELCQQVTNDLLTAGKVRAVRVLSIYGGRAYEPQVEALKKGV 168 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGRL D K L +S +K++VLDEADEMLDLGF D+E I+ P KR+ ++F Sbjct: 169 DVVVGTPGRLLDLAGQKKLRLSSVKSLVLDEADEMLDLGFLPDVEKIIQLLPAKRQTMLF 228 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALS-DRDNAIVNILRYH 242 SAT+ + +LA+ Y + + + + + + + V A S D+ + +L+ Sbjct: 229 SATMPGQVISLARRYMSQPTHIRATAPDDEGATVANITQHVFRAHSMDKPEVVARVLQAD 288 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 G ++FC T+ + + LA F A+ G+L Q R AL+ R+G+ V + TD Sbjct: 289 GRGLVMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 348 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 VAARGID+ + VI+ + + + LHR GRTGRAG G+++ ++ Sbjct: 349 VAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGIAITLV 394 >gi|254506284|ref|ZP_05118427.1| DNA and RNA helicase [Vibrio parahaemolyticus 16] gi|219550764|gb|EED27746.1| DNA and RNA helicase [Vibrio parahaemolyticus 16] Length = 426 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 187/341 (54%), Gaps = 1/341 (0%) Query: 5 ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64 +N I +AL+E GY LT VQ+ + + D+L +AQTG+GKT AF L + +L Sbjct: 6 QNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIVQNIL- 64 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 +N++ A+ +APTRELA Q+ ++ T V GG + +++ L+ G Sbjct: 65 DNEKPRQRHQTRAVILAPTRELAAQIASNIQDYTKYTDVKTVAIYGGAKMSSQQKALEAG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 ++V TPGRL +H+ +++++L+ +V DEAD MLD+GF IE I+ K + ++ Sbjct: 125 VDVLVATPGRLIEHMDMNNVSLANLEFLVFDEADRMLDMGFISAIESIMAGVNTKPQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT S + TLA + RV++A EN I + V + + ++ Sbjct: 185 FSATFSAQMNTLAGKILRQPKRVSVARENVTADTIAHVVYPVEQERKRELLSELIGRKNW 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VF + + + + K L + V G+ +Q R AL + G+ARV IATDVA Sbjct: 245 QQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARVMIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+D+ +L V++ ++ E+ +HR GRTGRAG++G +V Sbjct: 305 ARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAV 345 >gi|27364381|ref|NP_759909.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6] gi|32363316|sp|Q8DDN6|RHLB_VIBVU RecName: Full=ATP-dependent RNA helicase rhlB gi|27360500|gb|AAO09436.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6] Length = 435 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQV+ E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL Sbjct: 18 PQVV-EGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73 Query: 68 RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +PA + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ L Sbjct: 74 --TPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLTKL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179 Q G +++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ +P++ Sbjct: 132 QGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQE 191 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT+S + LA + + V + E + I + D+ + ++ Sbjct: 192 RLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLI 251 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 AI+F +T+ LA +V L+G++ Q++R L+ G + + Sbjct: 252 EEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLV 311 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|66814184|ref|XP_641271.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4] gi|74897202|sp|Q54VT4|DDX47_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx47; AltName: Full=DEAD box protein 47 gi|60469306|gb|EAL67300.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4] Length = 546 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 115/369 (31%), Positives = 198/369 (53%), Gaps = 20/369 (5%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE++ PQ+I +A ++ G+ +Q + L+ +D++ AQTGSGKT AF + + Sbjct: 121 FESLGVHPQII-DACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQ 179 Query: 61 TLLAENDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 LL AP LA+APTRELA Q+ + + + GV V +GG+ + Sbjct: 180 KLL---------EAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQ 230 Query: 118 RRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 L H+VVG+PGR+ H+ KG N+ +K ++DEAD + F +++ IL Sbjct: 231 SLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVI 290 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 PK+R +FSAT++ + L + + V+V +AS+ + + + + V +D + Sbjct: 291 PKERNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLA 350 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 IL I+F ST AS ++ +L F + ++G++ Q +R +L + G Sbjct: 351 YILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKS 410 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQ 353 + +ATDVAARG+D+P ++LVI+ ++ +N + +HR GRT RAG G ++ ++ Q M Sbjct: 411 ILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMY 470 Query: 354 RRAERLFRE 362 +R E + ++ Sbjct: 471 QRIEFVLKK 479 >gi|160358662|sp|A6ZSX1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName: Full=Ribosomal RNA-processing protein 3 gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789] gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA [Saccharomyces cerevisiae RM11-1a] gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291] gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796] Length = 501 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I +A Y T +Q + P L D++ AQTGSGKT AF + + + L + Sbjct: 89 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 147 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 148 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184 I++ TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P ++R + Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 321 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F T+A+ R + + F AL G+L+Q +R AL + + G+ + +ATDVA Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 381 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++V++ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427 >gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042] Length = 454 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + ++ N + V + + +++ + +VF T Sbjct: 195 KNLAEKLLHNPLEIEVSRRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|48136057|ref|XP_393356.1| PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis mellifera] Length = 403 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +A+ +L + L Sbjct: 49 GFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQSLDTQ------VRETQVL 102 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 103 VLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 162 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ + L +K +VLDE+DEML+ GF++ I + P ++++ SAT+ I + Sbjct: 163 IKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTS 222 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 223 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 282 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER N ++ R G++RV I TDV ARGID+ + LVI Sbjct: 283 DWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 342 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+S+ Sbjct: 343 NYDLPNNRELYIHRIGRSGRFGRKGVSI 370 >gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator] Length = 627 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 126/377 (33%), Positives = 200/377 (53%), Gaps = 12/377 (3%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 ++ FE N P + E + +GY T +Q L +D++ AQTGSGKT+ + L Sbjct: 124 IQYFEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILP- 182 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117 A + R S P+AL +APTRELA Q+ +E+ + ++ V CI GG + Sbjct: 183 AIVHIIHQPRLSNGDGPIALILAPTRELAQQI-QEVANCFGESAAVRNTCIFGGAPKGPQ 241 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 DL G I + TPGRL D + N+ +VLDEAD MLD+GF I I++ Sbjct: 242 AHDLDRGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 301 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236 R++LM+SAT + LA+++ D +NI S + +I + ++D+ + Sbjct: 302 PDRQVLMWSATWPKEVRALAEDFLTDYTHLNIGSLTLSANHNITQIIDVCQEFEKDSKLF 361 Query: 237 NILRYHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 +L+ G + I+F T+ V T+ + +Q +++ G+ +QQER + LQ R G Sbjct: 362 RLLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFRSG 421 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352 RA + +ATDVAARG+D+ D++ VI+ + S+ E+ +HR GRTGR + G + F NM Sbjct: 422 RAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNM 481 Query: 353 QRRAE--RLFREANVSV 367 + + + REA +V Sbjct: 482 KHAGDLIEVLREAGQNV 498 >gi|227204273|dbj|BAH56988.1| AT3G13920 [Arabidopsis thaliana] Length = 398 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 184/337 (54%), Gaps = 7/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D FS AL Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + +L + PEN LHR GR+GR GRKG+++ + ++ +R Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 >gi|197265494|ref|ZP_03165568.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243749|gb|EDY26369.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 453 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374 Query: 369 -WEPAPSVEA 377 +EP P ++A Sbjct: 375 GYEPDPLIKA 384 >gi|297847848|ref|XP_002891805.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337647|gb|EFH68064.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 412 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D ++ AL Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YTLVQCQ-AL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L +K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ I ++ +R + + NV V E PS Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFITRDDERMLFDIQKFYNVVV--EELPS 406 >gi|148549632|ref|YP_001269734.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida F1] gi|161378136|ref|NP_743455.2| ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440] gi|148513690|gb|ABQ80550.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1] Length = 480 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 185/338 (54%), Gaps = 8/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70 A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ S L +R+ Sbjct: 105 AIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERY- 163 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129 P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ I+V Sbjct: 164 -MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILV 222 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187 TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K R+ L+FSA Sbjct: 223 ATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA 282 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T + + LAK + + V I EN ++ VA SD+ + N++ + + Sbjct: 283 TFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERV 342 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF + + V R + L LSG++ Q +R L+ R+GR V +ATDVA RG Sbjct: 343 MVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRG 402 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 I + + VI+ L +P++ +HR GRTGRAG G+S+ Sbjct: 403 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSI 440 >gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118] Length = 501 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I +A Y T +Q + P L D++ AQTGSGKT AF + + + L + Sbjct: 89 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 147 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 148 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184 I++ TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P ++R + Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 321 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F T+A+ R + + F AL G+L+Q +R AL + + G+ + +ATDVA Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 381 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++V++ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427 >gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354] gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354] Length = 454 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + + +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032] gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis z3032] Length = 500 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 7/376 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ A++E+GY T +Q + L KD++ SAQTG+GKT F L L L A+ Sbjct: 12 PEIL-RAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRLTAKAP 70 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AL + PTRELA QVG + + V GGVS++ + L++G + Sbjct: 71 HAQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKLRSGVDV 130 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGRL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSA Sbjct: 131 LIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSA 190 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I TLA+ ++ V +A N I V + + ++ + Sbjct: 191 TFSDDIKTLAEKLLRNPEEVEVARRNTASEQITQHVHFVDKKRKRELLSYLIGDGNWQQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ + + L + A+ G SQ R+ AL + G RV +ATD+AARG Sbjct: 251 LVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REA 363 +D+ +L V++ EL + PE+ +HR GRTGRA G + V V + R ER+ RE Sbjct: 311 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERVLQREI 370 Query: 364 NVSVV--WEPAPSVEA 377 + +EP PS+ A Sbjct: 371 PRMAIAGYEPDPSIPA 386 >gi|116672314|ref|YP_833247.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp. FB24] gi|116612423|gb|ABK05147.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24] Length = 635 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 192/374 (51%), Gaps = 6/374 (1%) Query: 1 MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 M F + P+ + + L+ +G +Q L L +DVL +TGSGKT+AF + L Sbjct: 1 MTTFAGLGTPKELADTLTAQGITEPFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPL 60 Query: 59 ASTLLA-ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 + L E F P+ L +APTRELA Q+ +E + G+ V GG+S R+ Sbjct: 61 VARLAEREAKHFRKPGRPMGLVLAPTRELATQINATIEPMAKAMGLNTTVIYGGISQARQ 120 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 + L+ G IV+ PGRL D IR + L + ++ VLDEAD M DLGF ++ ++D +P Sbjct: 121 EKALRAGVDIVIACPGRLEDLIRQRILTLEAVEVTVLDEADHMADLGFLPVVKKLMDMTP 180 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIV 236 + + L+FSAT+ + + + Y + + ++ + +++ ++V + + IV Sbjct: 181 SQGQRLLFSATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIV 240 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 + GA ++F T+ + K L + V L G LSQ R L G R Sbjct: 241 EL--ASGAGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVR 298 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 V +ATDVAARG+ + D+ELVIH + + + LHRSGRT RAG G V + Q Sbjct: 299 VLVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDV 358 Query: 357 ERLFREANVSVVWE 370 ++L + A V V +E Sbjct: 359 KKLMKAAGVEVNFE 372 >gi|162462542|ref|NP_001104874.1| translation initiation factor [Zea mays] gi|2286151|gb|AAB64289.1| translation initiation factor [Zea mays] Length = 414 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 191/355 (53%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 60 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGSGVHVVVGTPGRVFDM 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV + PA Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDIQKFYNVLIEELPA 408 >gi|312959108|ref|ZP_07773627.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6] gi|311286878|gb|EFQ65440.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6] Length = 486 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 119/348 (34%), Positives = 193/348 (55%), Gaps = 9/348 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ A+ + G+ T +Q +L L KD + AQTG+GKT AF +++ + LL Sbjct: 102 FKLAPELM-HAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLL 160 Query: 64 ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + Sbjct: 161 QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 218 Query: 121 LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 219 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 278 Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ L+FSAT + + LAK + D V I + N +++ VA +D+ + N Sbjct: 279 AERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYN 338 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ +G + +VF + + V R + L LSG++ Q +R L+ R+G+ RV Sbjct: 339 LINDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 398 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVA RGI + + VI+ L P++ +HR GRTGRAG G+S+ Sbjct: 399 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSI 446 >gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae 7-10-1-b] Length = 445 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 180/338 (53%), Gaps = 5/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T VQE + L +DV+ +A TG+GKT AF L + + DR Sbjct: 49 AVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIERI----DRAKKPG 104 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 +P AL ++PTRELA+Q+ L +G+ V +GGV + L G I+V TPG Sbjct: 105 SPRALVVSPTRELALQIDAACTQLAKGSGLRVVTVVGGVPYKGQLSKLSRGVDILVATPG 164 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + + ++ +VLDEAD MLD+GF ++ I+ ++P R+ L+FSAT+ + Sbjct: 165 RLHDLMERGDVKLRDVEILVLDEADRMLDMGFWPTMKKIVAATPSSRQTLLFSATLDRKV 224 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +D V +A + I+ V V + + + +L G+K IVF T Sbjct: 225 MQSVSAILRDPAFVEVAHKGETSDTIEQFIVPVGSMQKASLLRLLLAERGSKRVIVFTDT 284 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + T L F+ ++ + +Q +R AL G V +ATDV ARGID+PD+ Sbjct: 285 KTRAEICTGQLKRAGFRAESIHSDKTQAQRKRALAAFSKGDVDVLVATDVLARGIDVPDI 344 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 V++ EL NP++ +HR GRTGRAG G S+ FV P+ Sbjct: 345 AYVVNYELPENPDDYVHRIGRTGRAGEAGCSISFVSPE 382 >gi|89094340|ref|ZP_01167281.1| ATP-dependent RNA helicase, DEAD box family protein [Oceanospirillum sp. MED92] gi|89081399|gb|EAR60630.1| ATP-dependent RNA helicase, DEAD box family protein [Oceanospirillum sp. MED92] Length = 412 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 110/347 (31%), Positives = 187/347 (53%), Gaps = 5/347 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + +A+ GY + VQ + L KD+LV A+TG+GKT AF L + LL + Sbjct: 8 LSQPVLQAVENAGYHEASPVQAEAIPAVLSGKDLLVGAKTGTGKTAAFALPVLDQLLNTS 67 Query: 67 DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + P + AL + PTRELA QV + TG+ AV GGV + + L+ G Sbjct: 68 SQVQPDKKVIKALVLVPTRELAQQVNNSFKKYAKGTGLRSAVAYGGVGIGPQIDQLKQGV 127 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----RR 181 ++V TPGRL D + K N+ ++ ++ DEAD MLD+GFRD+I+ ++ PK+ R+ Sbjct: 128 DLLVATPGRLLDLCKKKAANLREIEFLIFDEADRMLDMGFRDEIKAVISKLPKREQKARQ 187 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 +++FSAT++ I +KN + + ++D + + +++ Sbjct: 188 VMLFSATLNDRIFKFSKNLLLKPQVIEVDQRGSSADNVDQIIYNCDPARKYEITSYLIKN 247 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G +VF T+ + + L+E + + + +Q++R +AL + + +V +AT Sbjct: 248 RGWAQVMVFSQTKQGADKLQQYLSEQGLETDVIHADRTQKQREDALSQFKSQKLKVLVAT 307 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARGID+ +L VI+ E+ E+ +HR GRTGRAG +G+++ ++ Sbjct: 308 DVAARGIDIAELPAVINLEMPFKAEDYIHRIGRTGRAGSQGVAISLL 354 >gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335] gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335] Length = 435 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 114/348 (32%), Positives = 191/348 (54%), Gaps = 12/348 (3%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 + N T +Q A + P L +DV+ A+TGSGKT +F + + + LL + P A+ Sbjct: 59 WTNPTQIQAASIPPALEGRDVIGLAETGSGKTGSFAIPILNYLLEK-----PQKQVFAVI 113 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 +APTRELA Q+ + L G +GGV + + L H+VV TPGRL DH+ Sbjct: 114 LAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALARNPHVVVATPGRLLDHL 173 Query: 140 RG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---KKRRMLMFSATISPAITT 195 + KG ++ +K +V+DEAD ML + F +I IL+ P K RR ++FSAT++ + Sbjct: 174 QNTKGFHLRQIKYLVMDEADRMLSMDFEKEINEILEVIPDCEKGRRTMLFSATMTSKVEK 233 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 L + D VRV ++++ + + + + +D + ++ H ++ +VF +T Sbjct: 234 LQRASLVDPVRVEVSTKFQTPKKLLQNYLFIPAKYKDCYLTYLINEHAGQSILVFGATCN 293 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 +V R +L F + L G++SQ +R AL + G + I TDVA+RG+D+P +++ Sbjct: 294 NVQRLALMLRNLGFPAICLHGQMSQPKRLGALTKFKSGGRDILICTDVASRGLDIPSVDV 353 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 VI+ +L + ++ +HR GRT RAGR G ++ ++ Q + +R E L Sbjct: 354 VINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVYQRLEHLL 401 >gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM 12145] Length = 408 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 110/340 (32%), Positives = 181/340 (53%), Gaps = 2/340 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI I +L E G+ T +Q + L +D+L AQTG+GKT AF + L S L Sbjct: 7 NISSGIKRSLEEAGFKKPTDIQFKSIPQILSGQDILAIAQTGTGKTAAFAIPLISMLERS 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + A+ + PTRELA+Q+ + L T ++ IGGV + + + L N A Sbjct: 67 KPHLDKPTIK-AVVMVPTRELAIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLKKL-NKA 124 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +++ TPGR+ D + L + + +VLDEAD ML+ GF +DI+ ++ PK+R+ + F Sbjct: 125 DVLIATPGRIMDLVFKGHLYLKQIDFLVLDEADRMLEQGFYNDIKKLITLLPKRRQTMFF 184 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SATI+ I LA VR+ ++ ++ ++D+ V + D+ + +++ + K Sbjct: 185 SATINDTIKDLAYALVNKPVRIQLSPKDPVSKNVDHAVAYVGMDDKRFFLERLIKENQGK 244 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 IVF T+ R K + + G+ Q+ R L RDG+ ++ IATD++A Sbjct: 245 KIIVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKNQILIATDISA 304 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RG+D+ ++ V++ +L PEN +HR GRTGR +G +V Sbjct: 305 RGLDVKGVDFVVNYDLPEVPENYVHRIGRTGRGTSRGRAV 344 >gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus] Length = 780 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 209/399 (52%), Gaps = 18/399 (4%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F N P + + L RG L VQ + +D++ A+TG+GKT +F + L Sbjct: 186 FSNFPISEETIKLLKARGVTFLFPVQAKTFHHVYSGRDLIAQARTGTGKTFSFAIPLIEK 245 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 L E P L +APTRELA QV ++ + K + VA GG + + Sbjct: 246 LQGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LAVACFYGGTPYGNQIERM 303 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180 +NG I+VGTPGR+ DH+ L++S LK VVLDE D+MLD+GF D +E IL + KK Sbjct: 304 RNGIDILVGTPGRIKDHLENGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILKVAYKKDS 363 Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233 + L+FSAT + +AK Y K +V++ + Q + I ++ A+ S R Sbjct: 364 EDNPQTLLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEHLAIKCHWSQRAA 423 Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 I +++R Y G + IVFC T+ ++ + +L G++ Q++R L+ R Sbjct: 424 VIGDVIRVYSGHQGRTIVFCETKKEAQELSQNSSIKQ-DAQSLHGDIPQKQREITLKGFR 482 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 +G V +AT+VAARG+D+P+++LV+ + + E+ +HRSGRTGRAGR G+ + Sbjct: 483 NGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 542 Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387 + + ++ ++A + PS I +DA R+L Sbjct: 543 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 581 >gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111] gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212] gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154] gi|215919015|ref|NP_819700.2| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 493] gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493] gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111] gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212] gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154] Length = 420 Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 196/376 (52%), Gaps = 16/376 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GYV T VQ + L+ +DV+V+AQTG+GKT F L L L ++ Sbjct: 24 AIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSA 83 Query: 74 APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130 P+ AL + PTRELAVQV E Y K + A + GGVS+ + L+ G I+V Sbjct: 84 KPVIRALILTPTRELAVQVF-ECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVA 142 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + LN+S ++ VLDEAD MLD+GF DI IL P+ R+ L+FSAT S Sbjct: 143 TPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSATFS 202 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---A 247 I L + +A N + I + +V DR + G+KN Sbjct: 203 KEIKELTDKLLHSPALIEVARRNTAAARITH---VVHPVDRQRKRELLSFMIGSKNWRQV 259 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ +R ++ L A+ G SQ R AL + G+ RV +ATDVAARG Sbjct: 260 LVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARG 319 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREAN 364 +D+ L VI+ EL ++ +HR GRTGRA G+++ ++ + + R E+L + Sbjct: 320 LDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKM 379 Query: 365 VSVV---WEPAPSVEA 377 V +EP+P +A Sbjct: 380 PQEVIPGYEPSPFTKA 395 >gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU Goat Q177'] gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 331] gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 334] gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU Goat Q177'] gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 331] gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 334] Length = 411 Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 196/376 (52%), Gaps = 16/376 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GYV T VQ + L+ +DV+V+AQTG+GKT F L L L ++ Sbjct: 15 AIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSA 74 Query: 74 APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130 P+ AL + PTRELAVQV E Y K + A + GGVS+ + L+ G I+V Sbjct: 75 KPVIRALILTPTRELAVQVF-ECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVA 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + LN+S ++ VLDEAD MLD+GF DI IL P+ R+ L+FSAT S Sbjct: 134 TPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSATFS 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---A 247 I L + +A N + I + +V DR + G+KN Sbjct: 194 KEIKELTDKLLHSPALIEVARRNTAAARITH---VVHPVDRQRKRELLSFMIGSKNWRQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ +R ++ L A+ G SQ R AL + G+ RV +ATDVAARG Sbjct: 251 LVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREAN 364 +D+ L VI+ EL ++ +HR GRTGRA G+++ ++ + + R E+L + Sbjct: 311 LDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKM 370 Query: 365 VSVV---WEPAPSVEA 377 V +EP+P +A Sbjct: 371 PQEVIPGYEPSPFTKA 386 >gi|320106012|ref|YP_004181602.1| DEAD/DEAH box helicase domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924533|gb|ADV81608.1| DEAD/DEAH box helicase domain protein [Terriglobus saanensis SP1PR4] Length = 501 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 129/407 (31%), Positives = 217/407 (53%), Gaps = 32/407 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-----AS 60 NI + + + L+ +VN T VQ + P L +DVL +A TG+GKT++F + + A+ Sbjct: 37 NISEKLKQRLAANNFVNPTPVQAKAIPPALEGRDVLATAATGTGKTLSFLIPMIERMDAN 96 Query: 61 TLLAENDRFSPASAPL------------------------ALAIAPTRELAVQVGRELEW 96 L A + + AP AL + PTRELA+QV Sbjct: 97 PLAALVQQVAQEQAPQPPQYGRQRGGRNNPPPRGPRAPIRALILLPTRELAMQVLDAYAK 156 Query: 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156 + + GG+S + L+ G +VV TPGRL D+++ + +N+++++ +VLDE Sbjct: 157 IVPNAKQDSVLVCGGLSEGAQLDALRRGPRLVVATPGRLEDYLKRREINLNNVEMLVLDE 216 Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 D MLD+GF I I+ + PK R+ + +SAT+ IT + ++Y + +R+ I + ++ + Sbjct: 217 VDRMLDMGFLPAIRRIVGALPKTRQTMCYSATLDANITEIVRDYVSNPIRIQIGTTSKPN 276 Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ RA V + D+ ++++ L A + +VF T+ R K L + + + G Sbjct: 277 ERVELRAFTV-MQDQKLSLLDQLLGEHAGSYLVFSRTKHGADRIAKKLEKLGHETDVIHG 335 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 + SQ +R+ AL+ GR+RV +ATDVAARGID+ + V++ +L + ++ +HR GRTG Sbjct: 336 DRSQSQRTAALKSFAMGRSRVLVATDVAARGIDIQHIAHVVNYDLPNGSDDFVHRIGRTG 395 Query: 337 RAGRKGM-SVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382 RA G+ + FV+PQ + A +L RE +S W A A ER+ Sbjct: 396 RASASGVATTFVMPQE-RSDARKLERELKISFKWAEADKGLAKEERN 441 >gi|183598226|ref|ZP_02959719.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827] gi|188020395|gb|EDU58435.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827] Length = 445 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 197/375 (52%), Gaps = 18/375 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E GY T +Q+ + L D+L SAQTG+GKT F L + L++ R Sbjct: 16 AINELGYEAPTPIQQQAIPAVLDGHDLLASAQTGTGKTAGFTLPILQKLIS-TPRIGKDR 74 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P+ AL + PTRELA QV ++ + V GGVS++ + L+ G I++ TP Sbjct: 75 KPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKLRGGVDILIATP 134 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D +N+S ++ +VLDEAD MLD+GF DI ++ PKKR+ L+FSAT S Sbjct: 135 GRLLDLEHQNAVNLSQVEILVLDEADRMLDMGFIHDIRRVISKLPKKRQNLLFSATFSNE 194 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LA + V + +A N + V + + ++ + +VF Sbjct: 195 IKQLANKLLDNPVTIEVAPRNSASEQVTQFVHHVDKKRKAELLSYMIGRENWQQVLVFTR 254 Query: 253 TRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 T+ +R LAEHL + A+ G SQ R+ AL + G RV +ATD+AARG+ Sbjct: 255 TKHGANR----LAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDVRVLVATDIAARGL 310 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANV 365 D+ L V++ EL + E+ +HR GRTGRA GM+V ++ + + E+L ++ V Sbjct: 311 DIEQLPYVVNFELPNVAEDYVHRIGRTGRADTTGMAVSLVCVDELKLLKDIEKLLKKP-V 369 Query: 366 SVV----WEPAPSVE 376 V+ +EP PS++ Sbjct: 370 PVMAIEGYEPDPSIK 384 >gi|320157764|ref|YP_004190143.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O] gi|319933076|gb|ADV87940.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O] Length = 435 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQV+ E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL Sbjct: 18 PQVV-EGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73 Query: 68 RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +PA + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ L Sbjct: 74 --TPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179 Q G +++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ +P++ Sbjct: 132 QGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQE 191 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT+S + LA + + V + E + I + D+ + ++ Sbjct: 192 RLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLI 251 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 AI+F +T+ LA +V L+G++ Q++R L+ G + + Sbjct: 252 EEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLV 311 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|496902|emb|CAA56074.1| translation initiation factor [Homo sapiens] Length = 411 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPSATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+G+ GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGQYGRKGVAI 378 >gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica] gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica] Length = 401 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 109/328 (33%), Positives = 181/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ AQ+G+GKT F ++ L + AL Sbjct: 47 GFEKPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATFSISTLQVL------DTSVRETQAL 100 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELA QV + + L V VCIGG +V + R L G H+VVGTPGR D Sbjct: 101 ILCPTRELAQQVQKVILALGDYMNVQAHVCIGGTNVGEDIRKLDFGQHVVVGTPGRTFDM 160 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L ++K ++LDEADEML+ GF++ I + P ++ + SAT+ I + Sbjct: 161 IRRRNLRTRNIKLLILDEADEMLNRGFKEQIYDVYRYLPPATQVCLVSATLPHEILEMTH 220 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FCST+ V Sbjct: 221 KFMSDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCSTKRKV 280 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + + E F V A+ G++ Q+ER+ ++ R G+ RV I+TDV ARG+D+P + L+I Sbjct: 281 DWLAEKMREANFTVSAMHGDMPQKERNEIMREFRSGQTRVLISTDVWARGLDVPQVSLII 340 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 341 NYDLPNNRELYIHRIGRSGRYGRKGVAI 368 >gi|195379947|ref|XP_002048732.1| GJ21163 [Drosophila virilis] gi|194143529|gb|EDW59925.1| GJ21163 [Drosophila virilis] Length = 519 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 195/392 (49%), Gaps = 50/392 (12%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + + L++ G +T +QE + L KD + +A+TGSGKT AF L + L E Sbjct: 18 LAKQLTKLGLKGVTPIQENCIPAILSGKDCIGAAKTGSGKTFAFALPILEKLSEE----- 72 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P S AL + PT ELA Q+ + GV V V GG E + L HIVV Sbjct: 73 PVSH-FALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPHIVVA 131 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 PGRL DH+ G + +LK +V+DEAD ML+ F + + I PK R+ L FSAT+ Sbjct: 132 MPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFFSATM 191 Query: 190 SPAITTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILR 240 K++ K++ IA E Q SD+ + R +L A DRD ++ LR Sbjct: 192 --------KDFMKESSIFPIAKDCLEWSQESDVATVDTLEQRYLLCADYDRDMVLIEALR 243 Query: 241 YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 + +N ++F +T+ + L+ + V L G + Q+ER AL + R Sbjct: 244 KYREQNENANVMIFTNTKKYCQLLSMTLSSMEIENVCLHGFMRQKERVAALSRFKSNHIR 303 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM-- 352 IATDVAARG+D+P ++LVI+ L P+ +HR GRT RAGRKG+ S+F P+++ Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLEL 363 Query: 353 ------------------QRRAERLFREANVS 366 QR ER+F + NV+ Sbjct: 364 LGAIEAEINTKLTEHPIDQRMVERIFMQVNVT 395 >gi|224073500|ref|XP_002304104.1| predicted protein [Populus trichocarpa] gi|118484805|gb|ABK94270.1| unknown [Populus trichocarpa] gi|222841536|gb|EEE79083.1| predicted protein [Populus trichocarpa] Length = 413 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 190/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ R + + N VV E PS Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLFDIQKFYN--VVIEELPS 407 >gi|254229364|ref|ZP_04922780.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] gi|151938055|gb|EDN56897.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25] Length = 577 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 137/454 (30%), Positives = 233/454 (51%), Gaps = 23/454 (5%) Query: 75 PLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P A+ +APTRELA+QV E++ L G+ V GG S+ + R L++GA ++VGTPG Sbjct: 8 PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKSGAQVIVGTPG 67 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D I + L++ + VLDEADEML++GF DD+ I++ +P+ + ++FSAT+ P + Sbjct: 68 RVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPML 127 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + + ++ V V++A +N + + +V ++D A+ +L +IVF T Sbjct: 128 KKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVRT 187 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R R L+ F+ AL G++ Q R + ++ G + +ATDV ARG+D+P + Sbjct: 188 RQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRI 247 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVWE 370 V + ++ + E+ +HR GRTGRAGRKG ++ ++ N M R ER+ + + + Sbjct: 248 THVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQLP 307 Query: 371 PAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424 V R E +A++ + LD +K+ L DP +AA L+ Sbjct: 308 LRDQVAEARLAKLGAELEAEK---EHKALDKFAELVEKLQTSL--DIDPATLAAMLLKRQ 362 Query: 425 ---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQKA 479 R E+ P+ RD+ + + G NF W + L VG +Q Sbjct: 363 QGKRPLFYIGED--PMVEAIERDK-QRRKERREGGRDGGRNFNNQDWDTYQLQVGREQGV 419 Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513 + + ++ L G+ + SIGAI++ TFV++ Sbjct: 420 QVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 453 >gi|118482639|gb|ABK93239.1| unknown [Populus trichocarpa] Length = 413 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 9/370 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + Sbjct: 46 NLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQ 101 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D AL +APTRELA Q+ + + L GV V C+GG SV ++R L G Sbjct: 102 LD--YDIVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGV 159 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 H+VVGTPGR+ D +R + L ++K VLDEADEML GF+D I I P K ++ +F Sbjct: 160 HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 219 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ P + + + VR+ + + I V V + + + ++ Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +++F +TR V T + V A G++ Q R ++ R G +RV I TD+ Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGI++ + LVI+ +L + PEN LHR GR+GR GRKG+++ + ++ +R + R N Sbjct: 340 ARGINVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSDIQRFYN 399 Query: 365 VSVVWEPAPS 374 V+V E PS Sbjct: 400 VTV--EELPS 407 >gi|115468814|ref|NP_001058006.1| Os06g0602400 [Oryza sativa Japonica Group] gi|113596046|dbj|BAF19920.1| Os06g0602400 [Oryza sativa Japonica Group] Length = 484 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 117/331 (35%), Positives = 187/331 (56%), Gaps = 23/331 (6%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLA---------ENDRFSPASA-PLALAIAPTR 84 L +D++ AQTGSGKT AF L + S L+A E F+ A+A P AL +APTR Sbjct: 1 LAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTR 60 Query: 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL 144 ELA Q+ E + +TG+ V V GG ++ + RDL+ GA I+V TPGRL D + + Sbjct: 61 ELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKV 120 Query: 145 NISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRMLMFSATISPAITTLAKNY 200 ++ +K +V+DEAD MLD+GF I I++ + P+K R+ ++FSAT P I LA ++ Sbjct: 121 SLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDF 180 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNA-------IVFC 251 + + + + I + L++ ++ ++++L+ G N+ +VF Sbjct: 181 LSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFV 240 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ L F A+ G+ +QQER +AL+ + G + +ATDVA+RG+D+P Sbjct: 241 ETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVP 300 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 ++ VI+ +L + E+ +HR GRTGRAG+ G Sbjct: 301 NVAHVINYDLPKSIEDYVHRIGRTGRAGKAG 331 >gi|104783960|ref|YP_610458.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48] gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas entomophila L48] Length = 634 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 189/342 (55%), Gaps = 10/342 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68 A+ GY T VQ+ + L+ +D++V+AQTG+GKT F L + L ++ R Sbjct: 15 AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPGGHPDKSQR 74 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127 P P L + PTRELA QV + +YA+ ++ CI GGV ++ + + + G + Sbjct: 75 HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLNFISACIFGGVGMNPQVQAMAKGVDV 132 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V PGRL D + G+G +++S ++ +VLDEAD MLD+GF D++ +L P KR+ L+FS Sbjct: 133 LVACPGRLLD-LAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S IT LA + R+ + N I+ R + S + + +++ + Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQ 251 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L +H A+ G SQ R+ AL + RV +ATD+AAR Sbjct: 252 VLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANTVRVLVATDIAAR 311 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ EL + E+ +HR GRTGRAGR G ++ ++ Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMV 353 >gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1] Length = 453 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + ++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSYMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N] gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N] Length = 592 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 121/373 (32%), Positives = 202/373 (54%), Gaps = 6/373 (1%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 I A+ G+ T VQ A + + D++VS+QTGSGKT AF L + + ++ Sbjct: 11 TILSAIEATGFSEPTPVQAAAIPRAMAGADLMVSSQTGSGKTAAFMLPALNRVAGQSP-- 68 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIV 128 + L + PTRELA+QV A G+ +GGV + + L ++ Sbjct: 69 NKGVGVQILVLTPTRELALQVADATATYGANLPGLRTTTVVGGVPYGAQLKALSRRVDVL 128 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DH++ + ++ + +VLDEAD MLD+GF +DIE I++ P+ R+ L+FSAT Sbjct: 129 VATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPQSRQTLLFSAT 188 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKN 246 + ++ LA+ ++ R+ IA +H++I +++L A S + + ++LR Sbjct: 189 LDGSVARLAEKMMREPERIEIAGHRDKHANI-TQSLLYADDASHKMRLLDHLLRDTRLDQ 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 AIVF +T+ L+E F AL G+++Q++R+ L ++ G+ RV +ATDVAAR Sbjct: 248 AIVFTATKRGADDLADRLSEQGFSAAALHGDMNQRQRTRTLTQLQRGQVRVLVATDVAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 GID+ + ++ +L E+ +HR GRTGRAGR G++ + + + + R+ + Sbjct: 308 GIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGLAYTLAVHSERHKVRRIEHYIGQT 367 Query: 367 VVWEPAPSVEAIR 379 + E +E R Sbjct: 368 ITPETIAGLEPQR 380 >gi|113460320|ref|YP_718381.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 129PT] gi|122945181|sp|Q0I1X0|RHLB_HAES1 RecName: Full=ATP-dependent RNA helicase rhlB gi|112822363|gb|ABI24452.1| ATP-dependent RNA helicase, DEAD box family [Haemophilus somnus 129PT] Length = 419 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 114/339 (33%), Positives = 190/339 (56%), Gaps = 7/339 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + +A+ E+G+ T +Q L L+ +D+ AQTG+GKT+AF A LL +N+ + Sbjct: 20 VQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNN-IN 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + P AL +APTREL VQ+ + +L TG+ + GG ++ + + G I++G Sbjct: 79 SSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDQGIDILIG 138 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSAT 188 T GR+ D+++ + + +++ VVLDEAD M DLGF DI ++L P++R ++FSAT Sbjct: 139 TTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQRLTMLFSAT 198 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGAKN 246 +S + LA + D V I E Q + R L S++D ++ +L + Sbjct: 199 LSYKVRELAFEHMNDPQYVEI--EPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWPER 256 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 I+F +T+ L+ +V L+G++ Q++R + L+ DG + +ATDVAAR Sbjct: 257 CIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLDILVATDVAAR 316 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+ +PD+ V + +L + E+ +HR GRTGRAG G+S+ Sbjct: 317 GLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISI 355 >gi|90577843|ref|ZP_01233654.1| putative ATP-dependent RNA helicase [Vibrio angustum S14] gi|90440929|gb|EAS66109.1| putative ATP-dependent RNA helicase [Vibrio angustum S14] Length = 446 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 116/330 (35%), Positives = 184/330 (55%), Gaps = 9/330 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--APLALAIA 81 T +Q+ + + KD+L S++TGSGKT+AF L + R P + P L + Sbjct: 25 TEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQRMY----RSKPFTRRDPRVLILT 80 Query: 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 PTRELA QV +L L A T + +GG + + + + L+N VV TPGRL DH+ Sbjct: 81 PTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKALRNDPMFVVATPGRLADHLEH 140 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKN 199 + + L+ ++LDEAD MLDLGF + I +++ +RR LMFSAT+ + + +A Sbjct: 141 RSTRLDGLEMLILDEADRMLDLGFEAQLRRINEAANHRRRQTLMFSATLDHSDVVEIASE 200 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258 + R++I +H DI R +L D A+++ IL K I+F +TRA Sbjct: 201 MLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKILETQDYKQVIIFTATRADTD 260 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 R T L E + VALSG L+Q +R++ + ++ + TD+A+RG+D+ ++ LVI+ Sbjct: 261 RLTAELNERKLKAVALSGSLNQNQRNSIMSQFERTCHKILVTTDIASRGLDIDNVSLVIN 320 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ + E +HR GRTGRAG KG ++ ++ Sbjct: 321 FDMPKHAEEYVHRVGRTGRAGNKGDAISLV 350 >gi|224052117|ref|XP_002190981.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 708 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 125/389 (32%), Positives = 211/389 (54%), Gaps = 18/389 (4%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L RG L VQ NP KDV+ A+TG+GKT +F + L L E+ Sbjct: 141 QLLQARGVTYLFPVQVKTFNPVYTGKDVIAQARTGTGKTFSFAIPLIEKLQGESQERRRG 200 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P L + PTRELA QV ++ + + K + V GG + + +++G I+VGTP Sbjct: 201 RPPKVLVLCPTRELANQVAKDFKDITRK--LTVGCFYGGTPYNGQIDLMRSGIDILVGTP 258 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----RMLMFSA 187 GR+ DH++ L+++ +K VVLDE D+MLD+GF + +E IL + KK + L+FSA Sbjct: 259 GRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSEDNPQTLLFSA 318 Query: 188 TISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHG 243 T + +AK Y K ++++ + Q + +++ A+ S R I ++++ Y G Sbjct: 319 TCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSG 378 Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++ IVFC T+ + L + Q +L G++ Q++R L+ R+G +V +AT Sbjct: 379 SQGRTIVFCETKKEANEL--ALNASIKQDCQSLHGDIPQKQREITLKGFRNGSFKVLVAT 436 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 +VAARG+D+P+++LV+ + + E+ +HRSGRTGRAGR G+ + + + + + + Sbjct: 437 NVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEYQLRHVEQ 496 Query: 362 EANVSVVWEPAPSVEAI---RERDAQRIL 387 +A ++ P+ I +DA R L Sbjct: 497 KAGITFKRVGVPTATDIIKASSKDAMRCL 525 >gi|313500476|gb|ADR61842.1| RhlB [Pseudomonas putida BIRD-1] Length = 480 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 185/338 (54%), Gaps = 8/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70 A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ S L +R+ Sbjct: 105 AIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERY- 163 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129 P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ I+V Sbjct: 164 -MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILV 222 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187 TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K R+ L+FSA Sbjct: 223 ATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA 282 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T + + LAK + + V I EN ++ VA SD+ + N++ + + Sbjct: 283 TFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERV 342 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF + + V R + L LSG++ Q +R L+ R+GR V +ATDVA RG Sbjct: 343 MVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRG 402 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 I + + VI+ L +P++ +HR GRTGRAG G+S+ Sbjct: 403 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSI 440 >gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium D16] gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium D16] Length = 628 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 180/347 (51%), Gaps = 11/347 (3%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE++ PQ++ AL E GY + +QE + P L +DVL AQTG+GKT AF + Sbjct: 3 FEDLGLCPQILA-ALKEEGYEKPSPIQEQAIPPALAGRDVLGCAQTGTGKTCAFAAPILQ 61 Query: 61 TLLAENDRFSPASA-PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 L + PAS P+ AL + PTRELA+Q+G E + AV GGV + Sbjct: 62 RLSNK-----PASGHPIRALILTPTRELAIQIGESFEHYGRHLALRCAVIFGGVGQAPQV 116 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 L G I+V TPGRL D + ++++ L+ VLDEAD MLD+GF D++ IL P+ Sbjct: 117 EKLGKGVDILVATPGRLGDLYQQGFIHLNDLEIFVLDEADRMLDMGFIHDVKKILKWLPE 176 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 K++ L FSAT+ I L + RV + + I V ++ + + Sbjct: 177 KKQTLFFSATMPKEIAELVNSLLHHPARVAVDPVSSPVEAIRQSVYFVDRGNKTKLLSLL 236 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + G KNA+VF T+ ++ + L + A+ G SQ R AL + G R Sbjct: 237 MDQLGVKNALVFTRTKHGANKVARDLVKAGITAAAIHGNKSQTARQQALADFKSGAIRCL 296 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATD+AARG+D+ +L V + L PE +HR GRTGRAG G +V Sbjct: 297 VATDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGHGGTAV 343 >gi|54307767|ref|YP_128787.1| ATP-dependent RNA helicase SrmB [Photobacterium profundum SS9] gi|46912190|emb|CAG18985.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum SS9] Length = 419 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 124/349 (35%), Positives = 185/349 (53%), Gaps = 3/349 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E GY T VQ + L +DVL SA TG+GKT AF L + LL + R P Sbjct: 16 AIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPMIQHLL-DFPRKKPGP 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A + L + PTRELA+Q+ L T + + GG+S L IVV TPG Sbjct: 75 ARV-LILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHAELLGKTQDIVVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192 RL +++ + + ++ ++LDEAD MLD+GF +E I +R+ L+FSAT+ Sbjct: 134 RLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVERINHECRWRRQSLLFSATLEGKG 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + ++ K+ V VN A R+ I + D A++ + H A+ +IVF Sbjct: 194 VREFSETILKEPVEVNSAPSRRERKKIHQLYLRCDDMDHKLALLEQILKHQAERSIVFVK 253 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR ++ LA + + GE++Q R+NA+ RDG + IATDVAARGIDLPD Sbjct: 254 TRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNILIATDVAARGIDLPD 313 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 + VI+ ++ + LHR GRT RAG+KG+++ ++ + Q ER+ R Sbjct: 314 ISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIERVSR 362 >gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO] Length = 501 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I +A Y T +Q + P L D++ AQTGSGKT AF + + + L + Sbjct: 89 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 147 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 148 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184 I++ TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P ++R + Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 321 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F T+A+ R + + F AL G+L+Q +R AL + + G+ + +ATDVA Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 381 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++V++ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427 >gi|268679106|ref|YP_003303537.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946] gi|268617137|gb|ACZ11502.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 407 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 116/350 (33%), Positives = 193/350 (55%), Gaps = 10/350 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F ++ + +A+ G+ + T +Q++++ L KD++ A TGSGKT +F L + Sbjct: 3 FSHLSSPLQKAVHALGFTHPTPIQQSVIPLVLEHKDIVAKAHTGSGKTASFVLPILENWS 62 Query: 64 AENDRFSPASAPL-ALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRER 118 A+ A + L + PTREL VQV +L+ K VV IGG + + Sbjct: 63 AQTHE---GKARIRVLVLTPTRELCVQVAEAFVALSSFLHVKPKVVSV--IGGEKIGEQL 117 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 ++Q G IVV T GRL D + K +++S + VLDEAD+MLDLGF ++ IL+S P+ Sbjct: 118 LEIQKGCDIVVATSGRLLDILNKKQMDLSRVSFFVLDEADKMLDLGFEQELGLILESLPQ 177 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 KR+ L+FSAT + +A A+ V+I +E I R + V +R + + Sbjct: 178 KRQNLLFSATYPEKMQRIASRITPCAIEVSIEAEAPTLQRITQRVIEVNKENRAPLLREL 237 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 LR + +VF + + + +H F + G+L+Q++R+ LQ ++ + RV Sbjct: 238 LRENDWDLVLVFMANKRAADNIAVKFRKHSFLAESFHGDLAQEDRTWTLQSFKERKIRVL 297 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ATD+A+RG+D+ D+ VI+ +L + E+ +HR GRTGRAG++G+++ +I Sbjct: 298 FATDIASRGLDIDDVSCVINFDLPRSSEDYIHRIGRTGRAGKEGLAISLI 347 >gi|154492527|ref|ZP_02032153.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC 43184] gi|154087752|gb|EDN86797.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC 43184] Length = 419 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 173/336 (51%), Gaps = 5/336 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL + Y T +Q + L D+L AQTG+GKT AF + + + +R S Sbjct: 12 IRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQKI---EERIS 68 Query: 71 PASAP--LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P AL + PTRELA+Q+G T V V GGV + L+ G ++ Sbjct: 69 RGRKPGIKALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVGQKPQTDALERGVDVL 128 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D I + + L+ VLDEAD MLD+GF DI+ IL P+KR+ L FSAT Sbjct: 129 IATPGRLLDLINQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPRKRQSLFFSAT 188 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P I LA + +V + + ID V ++ N + N+L ++ + Sbjct: 189 MPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLEDRSLESVL 248 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ + +VL + A+ G Q R AL +D RV IATD+A+RGI Sbjct: 249 VFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRVLIATDIASRGI 308 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 D+ L VI+ +L + PE +HR GRTGRAGR G++ Sbjct: 309 DVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIA 344 >gi|261250046|ref|ZP_05942623.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891] gi|260939550|gb|EEX95535.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891] Length = 433 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 188/342 (54%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AE 65 PQ I E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL +E Sbjct: 18 PQ-ITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTSE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ L++G Sbjct: 77 HEGRKP-NQPRAIIMAPTRELAIQIYNDAESLIASTGIKAALAYGGESYDKQLSKLEDGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 +++GT GR+ D + K N++H++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S + LA + + V + E + I + + + ++ Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AI+F +T+ LA +V L+G++ Q++R L+ G + +ATDV Sbjct: 256 PDRAIIFANTKHKCESVWGYLAADGHRVGLLTGDVPQKKRERILEQFTKGDVDLLVATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|148910547|gb|ABR18348.1| unknown [Picea sitchensis] gi|224284155|gb|ACN39814.1| unknown [Picea sitchensis] gi|224286107|gb|ACN40764.1| unknown [Picea sitchensis] Length = 413 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLLDCQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVRDDQRILMSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRHSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 233 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + R NV V E PS Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQRFYNVVV--EELPS 407 >gi|209545432|ref|YP_002277661.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533109|gb|ACI53046.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 555 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/332 (35%), Positives = 180/332 (54%), Gaps = 3/332 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A+ + GY + T +Q + L +DVL AQTG+GKT +F L + L R Sbjct: 60 IQRAIDDMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILSGSRAR-- 117 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A P +L + PTRELA+QV + A+ IGG S+ ++ L G +++ Sbjct: 118 -ARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRGVDVLIA 176 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D GL ++ + +V+DEAD MLD+GF DIE I+ R+ L FSAT++ Sbjct: 177 TPGRLIDLFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLFFSATMA 236 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 P I LA + ++ + ++ + + I+ V+V +D+ + +LR +NAIVF Sbjct: 237 PEIRRLADMFLQNPKEITVSRPSSVATTIETGLVVVDEADKRRVLRRMLRDDAVQNAIVF 296 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V K L +H F AL G+L Q R L+ + G ++ + +DVAARGID+ Sbjct: 297 CNRKRDVDVLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCSDVAARGIDI 356 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 L V + +L + E+ +HR GRTGRAGR G Sbjct: 357 GGLSHVFNFDLPFHAEDYVHRIGRTGRAGRSG 388 >gi|18424420|ref|NP_568931.1| DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] gi|108861883|sp|Q8GY84|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10 gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana] Length = 456 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 188/345 (54%), Gaps = 7/345 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AEND 67 +A G+ N + +Q L L KDV+ AQTGSGKT AF + + LL +E Sbjct: 22 KACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPK 81 Query: 68 RFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P A A ++PTRELA+Q+ + E L A + AV +GG+ ++ L H Sbjct: 82 KGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPH 141 Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH+ KG ++ LK +VLDEAD +L+ F + IL+ P +R+ +F Sbjct: 142 VIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLF 201 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + ++ V++ AS+ + + VA +D +V IL Sbjct: 202 SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPES 261 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +++F T VL F+ + +SG+++Q +R AL + G + + TDVA+ Sbjct: 262 TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS 321 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q Sbjct: 322 RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366 >gi|255713670|ref|XP_002553117.1| KLTH0D09328p [Lachancea thermotolerans] gi|238934497|emb|CAR22679.1| KLTH0D09328p [Lachancea thermotolerans] Length = 551 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 195/369 (52%), Gaps = 10/369 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P+ + + G+ T +Q L +D++ A TGSGKT+++ L + A+ Sbjct: 118 FPEYVLSEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ- 176 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 SP P+ L +APTRELAVQ+ E + K+ + C+ GGV + R+L GA Sbjct: 177 PLLSPGDGPIVLVLAPTRELAVQIQTECS-KFGKSSRIRNTCVYGGVPRGHQIRELTRGA 235 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL D + N+ + +VLDEAD MLD+GF I I+D R+ LM+ Sbjct: 236 EIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 295 Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 SAT + LA++Y D ++VN+ S H+ V+ + RD + ++ Sbjct: 296 SATWPKEVQQLARDYLHDPIQVNVGSLELAASHNIAQIVEVVSDMEKRDRLLKHLETASE 355 Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 K++ ++F ST+ + T+ L + + +A+ G+ +Q ER LQ R G + + +AT Sbjct: 356 DKDSKILIFASTKRTCDEITRYLRQDGWPALAIHGDKAQNERDWVLQEFRTGNSPIMVAT 415 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--R 358 DVAARGID+ + VI+ ++ N E+ +HR GRTGRAG G ++ F N A+ Sbjct: 416 DVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKGMGAQLIS 475 Query: 359 LFREANVSV 367 + REAN + Sbjct: 476 IMREANQQI 484 >gi|21241215|ref|NP_640797.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|21106527|gb|AAM35333.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 430 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 190/347 (54%), Gaps = 11/347 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL++ G T +Q+ + P L +D++ AQTGSGKT+A+ L L + +P + Sbjct: 19 ALAKAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYALPLL-----QQRCLAPDT 73 Query: 74 APL---ALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128 AP AL + PTRELA QV L L A + V GG S++ + L+ GA +V Sbjct: 74 APRVLGALVLVPTRELAAQVEDALRQLAAHLPRRLKSVVATGGSSINPQLLALRGGADLV 133 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + L ++ + +VLDEAD +L+LGF +++ IL P +R+ ++FSAT Sbjct: 134 VATPGRLLDLVEHNALRLNGVTTLVLDEADRLLELGFGAELDRILALLPAQRQTVLFSAT 193 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 PAI +LAK +D +RV I + Q I A+ V R + ++L+ H + Sbjct: 194 FPPAIASLAKRRLRDPLRVTIDATPEQAPAIAQCAIAVDAGQRTQLLRHLLQEHAWPQLL 253 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF ++R S + + L++ + L GELSQ R L+ + +V +ATD+A RGI Sbjct: 254 VFVASRHSADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLAGRGI 313 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 D+ L V++ +L + + HR GRT RAG G+++ FV + Q+ Sbjct: 314 DIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 360 >gi|313202811|ref|YP_004041468.1| dead/deah box helicase domain protein [Paludibacter propionicigenes WB4] gi|312442127|gb|ADQ78483.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes WB4] Length = 451 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 174/335 (51%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ALS GY T +QE + L+ D+L AQTG+GKT AF + + L Sbjct: 12 ILNALSHEGYTQPTPIQEISIPIVLKGHDLLGCAQTGTGKTAAFAIPILQLLQLNKGAER 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA+Q+G + V GGV + L+ G I++ Sbjct: 72 APRKIKALIVTPTRELAIQIGESFAAYGRFMNLRHTVIFGGVPQGAQVGALKMGVDILIA 131 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ L VLDEAD MLD+GF D++ ++ P KR+ L FSAT+ Sbjct: 132 TPGRLLDLQTQGYVKLNELSIFVLDEADRMLDMGFIHDVKKLIKIIPAKRQSLFFSATMP 191 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 +I LA + + V + + I V ++ + ++++L+ K A+VF Sbjct: 192 ESIRVLAGSILTNPEEVAVTPVSTTAETIQQEMYFVDAVNKKDLLIHLLQDKSIKTALVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + ++L + + A+ G SQ R NAL+ +D RV +ATD+AARGID+ Sbjct: 252 TRTKHGADKVQRLLTKARIKAEAIHGNKSQNARQNALRNFKDRTTRVLVATDIAARGIDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DL LVI+ E+ + PE +HR GRTGRAG G +V Sbjct: 312 DDLNLVINYEIPNIPETYVHRIGRTGRAGLDGKAV 346 >gi|74142079|dbj|BAE41100.1| unnamed protein product [Mus musculus] Length = 411 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKELIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378 >gi|288921374|ref|ZP_06415654.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] gi|288347226|gb|EFC81523.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f] Length = 569 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 185/343 (53%), Gaps = 5/343 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+ + AL+E G V ++QE L L D++ A+TG+GKT+AFG+ + + A+++ Sbjct: 9 PETVA-ALAEVGIVRPFAIQELTLPLALARTDIIGQARTGTGKTLAFGIPVVQVVQAQDE 67 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + PTREL VQV ++ G+ V GG + + L++G I Sbjct: 68 --GADGHPQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLSALRSGVDI 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGRL D R K L+++ ++ +VLDEADEMLDLGF D+E I+ P++R ++FSA Sbjct: 126 VVGTPGRLLDLARQKALDLARVRTLVLDEADEMLDLGFLPDVERIIAFLPEQRHTMLFSA 185 Query: 188 TISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 T+ + LA+ + VR E R + D+ + +L+ Sbjct: 186 TMPGPVIGLARRFMSRPVHVRAEQPDEGRTVPNTQQHVFRAHALDKMEVLARVLQATDRG 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A+VF TR + + LA F A+ G+L Q +R AL+ R G+ V +ATDVAA Sbjct: 246 LAMVFVRTRRTADKVADDLARRGFAAAAVHGDLGQGQREQALRAFRGGKVDVLVATDVAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ + V++ + + LHR GRTGRAG G+++ + Sbjct: 306 RGIDVGGVTHVVNYQCPEDENVYLHRIGRTGRAGGSGVAITFV 348 >gi|227113019|ref|ZP_03826675.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 471 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 191/372 (51%), Gaps = 8/372 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 A+ E+GY + T VQ + L +D++ SAQTG+GKT F L L L + E Sbjct: 15 AIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSREAQHKGKG 74 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA Q+ ++ + V GGVS++ + L+ G I+V T Sbjct: 75 RRPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINPQMMKLRGGVDILVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 135 PGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + V + N + V + + ++ + + +VF Sbjct: 195 EIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQLIGENNWQQVLVFT 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + ++L + A+ G SQ R+ AL +DG RV +ATD+AARG+D+ Sbjct: 255 RTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRVLVATDIAARGLDID 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + + Sbjct: 315 QLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLKREIPRIA 374 Query: 369 ---WEPAPSVEA 377 +EP PS++A Sbjct: 375 IEGYEPDPSIKA 386 >gi|154288372|ref|XP_001544981.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1] gi|160380612|sp|A6QXC1|DBP3_AJECN RecName: Full=ATP-dependent RNA helicase DBP3 gi|150408622|gb|EDN04163.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1] Length = 487 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/325 (36%), Positives = 190/325 (58%), Gaps = 14/325 (4%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 +DV+ A+TGSGKT+AFG+ +L N S A+ I PTRELA+Q+ +L Sbjct: 108 RDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRIS-AVIITPTRELAMQIHDQL-VK 165 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + GV +A GG S +RR L+ A ++V TPGRL D + LN+ +K +VLDEA Sbjct: 166 FTPNGVGLACIYGGASKDDQRRALKK-ASVIVATPGRLKDFHSDESLNLKKVKYLVLDEA 224 Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI----AS 211 D MLD GF DI+ I+ + P +KR+ +MF+AT ++ LA + K+ V V I +S Sbjct: 225 DRMLDKGFEQDIKDIVSAMPSSRKRQTVMFTATWPISVRKLATTFMKEPVTVTIGGDLSS 284 Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAE 266 + R ++ I +V ++++ ++++L +Y +NA +VFC + +R + + Sbjct: 285 DIRANTRIKQIVEVVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKKEATRIERFIRS 344 Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326 F+V + G+++Q ER N+L + G V +ATDVAARG+D+P ++LV++ E Sbjct: 345 KGFKVAGIHGDMNQTERFNSLDAFKSGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVE 404 Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQN 351 + +HR GRTGRAG G+++ + +N Sbjct: 405 DYVHRIGRTGRAGSDGLAITMFTEN 429 >gi|258571293|ref|XP_002544450.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704] gi|237904720|gb|EEP79121.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704] Length = 399 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/340 (33%), Positives = 188/340 (55%), Gaps = 14/340 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 G+ + +++Q + + +D + AQ+G+GKT F +++ T L E Sbjct: 44 GFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTALRETQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + + V CIGG +V + R L +G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEAD++L GFRD I + P ++++ SAT+ + + Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADDLLARGFRDQIYDVYRYLPPATQVVVLSATLPYDVLS 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 LVI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374 >gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] Length = 472 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 182/338 (53%), Gaps = 6/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++ GY T +QE + L +DVL AQTG+GKT AF L + + L R A Sbjct: 15 AVAATGYTTPTPIQEQAIPHVLDRRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 71 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV + + VA+ IGGVS + L G +++ TPG Sbjct: 72 MPRTLILEPTRELAAQVKENFDRYGVGQKLNVALLIGGVSFGDQDAKLGRGVDVLIATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH L ++ ++ +V+DEAD MLD+GF DIE I P R+ L F+AT+ I Sbjct: 132 RLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPAEI 191 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILR-YHGAKNAIVF 250 + + + + V+V ++ + + ++ + +LR KNAI+F Sbjct: 192 RRITETFLHNPVKVEVSKPASTAVTVTQFQISTGKESHEKRELLRQLLRDAKDLKNAIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+ + V+ K L +H F AL G++ Q R AL+ R G + +A+DVAARG+D+ Sbjct: 252 CNRKREVAILHKSLQKHGFGAAALHGDMDQSARMAALEQFRKGELPLLVASDVAARGLDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 P++ V + ++ +P++ +HR GRTGRAGR G ++ ++ Sbjct: 312 PEVSHVFNFDVPHHPDDYVHRIGRTGRAGRLGTAISIV 349 >gi|149239594|ref|XP_001525673.1| hypothetical protein LELG_03601 [Lodderomyces elongisporus NRRL YB-4239] gi|146451166|gb|EDK45422.1| hypothetical protein LELG_03601 [Lodderomyces elongisporus NRRL YB-4239] Length = 461 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 178/307 (57%), Gaps = 16/307 (5%) Query: 35 LREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93 L KDV+ A+TGSGKT AFG+ A+ + + ++N S L I+PTRELA+Q+ Sbjct: 161 LDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDLS------VLCISPTRELALQIYDN 214 Query: 94 LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153 LE L T V GGVS + + ++NGA++VV TPGRL D I +++S + +V Sbjct: 215 LEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVDLSSINYLV 274 Query: 154 LDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212 LDEAD ML+ GF +DI+ I+ S+P + R+ LMF+AT + LA N+ V+V I Sbjct: 275 LDEADRMLEKGFEEDIKLIIGSTPAQGRQTLMFTATWPKEVRELANNFMNQPVKVTIGDR 334 Query: 213 NRQHSDIDYRAVLVALSD---RDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVL 264 + ++ ++ L D ++ ++N+L +Y N +VF + SR +L Sbjct: 335 DELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLL 394 Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324 + F+V A+ G+LSQQ+R+ ALQ + G + +ATDVAARG+D+P+++ VI+ Sbjct: 395 HRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVINLTFPLT 454 Query: 325 PENLLHR 331 E+ +HR Sbjct: 455 IEDYVHR 461 >gi|50312211|ref|XP_456137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74660243|sp|Q6CIV2|DBP2_KLULA RecName: Full=ATP-dependent RNA helicase DBP2 gi|49645273|emb|CAG98845.1| KLLA0F23716p [Kluyveromyces lactis] Length = 554 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/343 (34%), Positives = 180/343 (52%), Gaps = 5/343 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P + + + + G+ T +Q L +D++ A TGSGKT+++ L + A+ Sbjct: 120 FPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ- 178 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 SP P+ L +APTRELAVQ+ +E A + + GGV ++ RDLQ G Sbjct: 179 PLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVE 238 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I++ TPGRL D + N+ + +VLDEAD MLD+GF I I+D R+ LM+S Sbjct: 239 ILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 298 Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 AT + LA +Y D ++V I S + H+ VL RD ++ Sbjct: 299 ATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQD 358 Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 +++ I+F ST+ + T L + +A+ G+ +Q ER L R GR+ + +ATD Sbjct: 359 QDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATD 418 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARGID+ + VI+ ++ N E+ +HR GRTGRAG G ++ Sbjct: 419 VAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGSTGTAI 461 >gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019] gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019] Length = 454 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARCNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|254430075|ref|ZP_05043782.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881] gi|196196244|gb|EDX91203.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881] Length = 428 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/350 (34%), Positives = 193/350 (55%), Gaps = 16/350 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSP 71 +++ G+ T +Q +L L D + AQTG+GKT AF + + + LL + RF Sbjct: 38 IADSGFQYCTPIQAEVLTHTLAGADAIGRAQTGTGKTAAFLITVINDLLKHPIDVQRF-- 95 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVG 130 A P AL +APTRELA+Q+ ++ + L T + V +GG++ +R++ LQN I+V Sbjct: 96 AGEPRALIVAPTRELAMQIEKDAKVLAKHTDLQVMSVVGGMNFNRQQERLQNKLIDILVA 155 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188 TPGRL D + + L + ++ +VLDEAD MLD+GF D++ I+ +PK R+ +FSAT Sbjct: 156 TPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKSQYRQTQLFSAT 215 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + L++ + +DA V I ++ + + D+ + N++ I Sbjct: 216 FNDDVMNLSRRWTQDAEVVEIEPTQVTTDTVEQKVYITNTDDKFKLLYNLITGMNMDKVI 275 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF + R R + L + +V +SG++ Q +RS L+ R G +V IATDVA RGI Sbjct: 276 VFANRRDITRRVSDRLHKKGLKVSLISGDVPQTQRSKTLERFRAGDLQVLIATDVAGRGI 335 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350 + + V++ L +PE+ +HR GRTGRAG GMS+ F++P+ Sbjct: 336 HIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAFLLPE 385 >gi|66357412|ref|XP_625884.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc) [Cryptosporidium parvum Iowa II] gi|46226846|gb|EAK87812.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc) [Cryptosporidium parvum Iowa II] gi|323510023|dbj|BAJ77905.1| cgd4_3000 [Cryptosporidium parvum] Length = 702 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/360 (33%), Positives = 189/360 (52%), Gaps = 16/360 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E I +++ + + Y T VQ+ + L +D++ AQTGSGKT AF + +L Sbjct: 205 LEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIVMKML 264 Query: 64 AENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114 + +P + P+AL ++PTRELA+Q E TG+ V GG V Sbjct: 265 NDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYGGSEV 324 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + DL G+ I+V TPGRL D I RGK +N+ +K ++LDEAD MLD+GF I I+ Sbjct: 325 RSQIMDLDRGSDIIVATPGRLRDLIDRGK-VNLKLIKFLILDEADRMLDMGFAPQIREIV 383 Query: 174 DSSP-----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 + S R+ +MFSAT I LAK++ + + + + I R V Sbjct: 384 EDSEMPHSLDGRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEE 443 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 + +V +L G +VF + + L + F V++ G+ SQQER +AL+ Sbjct: 444 DHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALR 503 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + R G+ + +ATDVAARG+D+P++ VI+ ++ N ++ +HR GRTGRAG G++ + Sbjct: 504 LFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGLATSFV 563 >gi|146329072|ref|YP_001209762.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A] gi|146232542|gb|ABQ13520.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A] Length = 432 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 111/336 (33%), Positives = 185/336 (55%), Gaps = 4/336 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL + + T +Q L L DV+ AQTG+GKT AF L+L L+ N A Sbjct: 22 EALEDIHFTKTTPIQAQTLPLTLAGYDVMGIAQTGTGKTAAFLLSLMHYLMT-NPVHPKA 80 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGT 131 P A+ +APTRELA+Q+ +E++ L A TG+V GG S+ +++ Q +++GT Sbjct: 81 KGPWAIVLAPTRELAIQIKKEMDLLGAYTGLVSLAIYGGTSIEHQKKLFQACNVDVIIGT 140 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATI 189 PGR+ D + K + +++ VLDEAD M DLGF DD+ ++L P +R L+FSAT+ Sbjct: 141 PGRIIDLFKQKVFRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAYERLNLLFSATM 200 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 + LA + V I S+ ++I + A ++ ++ + + +++ Sbjct: 201 PQKVQELAYEHFNAPKVVAIESQQTTANNITHYLYHTAKHEKTPLLLGLFARERPERSMI 260 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +T+ + R + VL + + ALSG+++Q++R ++ ++G + +ATDVAARGI Sbjct: 261 FLNTKHDLERLSLVLTANGYHNAALSGDVAQKKREQIIRDFQEGTVNIVVATDVAARGIH 320 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + + V + +L E+ +HR GRT RAG G ++ Sbjct: 321 IDGITHVFNYDLPQIAEDYVHRIGRTARAGASGTAI 356 >gi|145632266|ref|ZP_01788001.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655] gi|144987173|gb|EDJ93703.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655] Length = 415 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/338 (33%), Positives = 185/338 (54%), Gaps = 2/338 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 ++ +AL+++G+ T +Q L L +DV AQTG+GKT+AF A LL D Sbjct: 19 IVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTIAFLTATFHHLLTHQDPN 78 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL +APTRELAVQ+ + E+L G+ A+ GG ++ + ++ G I++ Sbjct: 79 LEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGVDILI 138 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSA 187 GT GR+ D+++ +++ ++ VVLDEAD M DLGF DI ++L P+ R ++FSA Sbjct: 139 GTTGRVIDYVKQGVISLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQSRLTMLFSA 198 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+S + LA D + I E + I + D+ ++ ++ + Sbjct: 199 TLSYKVRELAFEDMNDPEYIEIEPEQKTGHCIKEELFYPSNQDKMALLLTLMEDEWPERC 258 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF +T+ LA +V L+G+++Q++R + L+ DG + +ATDVAARG Sbjct: 259 IVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARG 318 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + + D+ V + +L + E+ +HR GRTGRAG G+S+ Sbjct: 319 LHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356 >gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [marine gamma proteobacterium HTCC2207] gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [marine gamma proteobacterium HTCC2207] Length = 549 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/336 (33%), Positives = 178/336 (52%), Gaps = 2/336 (0%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++ +GY + +Q + L +DV+ +AQTG+GKT F L + LL+ R P Sbjct: 15 KAITAQGYDTPSPIQAKAIPAVLDGRDVMAAAQTGTGKTAGFTLPILQ-LLSAGKRAQPN 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QVG + + AV GGV ++ + L+ G ++V TP Sbjct: 74 QV-RTLILTPTRELAAQVGESVATYGKHMSLSSAVVFGGVKINPQMMKLRRGVDVLVATP 132 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + ++L+ +VLDEAD MLD+GF DI+ I+ PK+R+ LMFSAT S Sbjct: 133 GRLMDLYSQNAVKFTYLEVLVLDEADRMLDMGFIHDIKRIISLLPKRRQNLMFSATFSDD 192 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I LAK + + +++ N + V + + ++ + A+VF Sbjct: 193 IRKLAKGLVHNPIEISVTPRNATAPTVTQSIYTVDKKQKAGVLTRLIHDNKWGQALVFTK 252 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ ++ TK L A+ G SQ R+ AL + G R+ +ATD+AARG+D+ Sbjct: 253 TKHGANKLTKHLEAEGIVAAAIHGNKSQGARTKALAGFKAGEVRILVATDIAARGLDIEQ 312 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + E+ +HR GRTGRAG G ++ ++ Sbjct: 313 LPQVVNFDLPNVAEDYVHRIGRTGRAGSTGTAISLV 348 >gi|74006736|ref|XP_861449.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) isoform 8 [Canis familiaris] Length = 663 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|162661036|gb|EDQ48640.1| predicted protein [Physcomitrella patens subsp. patens] Length = 397 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 110/298 (36%), Positives = 168/298 (56%), Gaps = 6/298 (2%) Query: 77 ALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 L + PTRELA QV E+ L A+ V V GGV + + L+NGAH++VGTPGR+ Sbjct: 11 GLVLCPTRELADQVTTEIRRLARAEDNVKVVTLSGGVPLRGQNASLENGAHVIVGTPGRV 70 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 DH+ LN+ L +VLDEAD MLD+GF DDI + P +R+ L+FSAT I Sbjct: 71 IDHLDRGNLNLDSLNTLVLDEADRMLDMGFVDDIAKVAKQCPPQRQTLLFSATYPEGIAK 130 Query: 196 LAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + +D V V +A+ QHS I+ R V +R ++ +L + ++ + FC+T Sbjct: 131 LAARFMRDPVTVKVAA---QHSGEQIEQRWYEVDKEERLPSVARLLEHFRPESTLAFCNT 187 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 +A ++L + + L G+L Q++R L +G V +ATDVAARG+D+ +L Sbjct: 188 KARCRALAELLQAQGYSALELHGDLEQRDRDQVLVRFVNGSCSVLVATDVAARGLDVTNL 247 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 VI+ +++ +PE +HR GRTGRAG+KG+++ + + + + VW P Sbjct: 248 GAVINVDITPDPEVHVHRIGRTGRAGQKGLALSLATMDEMGAVGNIEQMQGSPSVWYP 305 >gi|328876634|gb|EGG24997.1| putative RNA helicase [Dictyostelium fasciculatum] Length = 806 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 5/359 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F + P I ++ G+ TS+Q L+ +D++ A+TGSGKT+AF L A + Sbjct: 406 FSHFPSYIMSEIAVLGFTAPTSIQCQSWPIALKGRDMIGLAETGSGKTLAF-LLPAIVHI 464 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P+ L + PTRELA+Q+ E + + + + GGV +++ + L++ Sbjct: 465 NAQPYLETGDGPIVLVLTPTRELAMQIQNECDKFGSSSKIKNCCIYGGVPKYQQAQALRS 524 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV TPGRL D + G N+ + +VLDEAD MLD+GF D I IL ++ L Sbjct: 525 GVEIVVATPGRLIDFLERGGTNLRRVTYLVLDEADRMLDMGFEDQIRKILGQIRPDKQTL 584 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRY- 241 MFSAT ++ +LA ++ D ++V I S E + + + D+ + L+ Sbjct: 585 MFSATWPKSVQSLAADFLVDPIQVKIGSAELSANHKVTQHIEICEKMDKQTKLFQYLKSI 644 Query: 242 -HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 GAK I+F T++ V + ++ F+ A+ G+ +Q ER AL +DG+ + IA Sbjct: 645 EPGAK-CIIFLETKSGVGMLARNMSYAGFKCEAIHGDKTQGERDFALSQFKDGKIQCLIA 703 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 TDVA+RG+D+ D++ VI+ + + E+ +HR GRTGRAG G + + + R A L Sbjct: 704 TDVASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAYTLFTLDDMRLASDL 762 >gi|156057349|ref|XP_001594598.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980] gi|160419160|sp|A7EGG4|PRP28_SCLS1 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28 gi|154702191|gb|EDO01930.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980 UF-70] Length = 816 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/371 (31%), Positives = 193/371 (52%), Gaps = 29/371 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64 +P+ + + +++ GY ++VQ A + L+ +D++ A TGSGKT AF L L + L Sbjct: 386 LPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELP 445 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 + F+ P A+ +APTRELA Q+ E + G +GG S+ + +L+NG Sbjct: 446 PLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNG 505 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177 A I++ TPGRL D I + L + +++DEAD M+DLGF + + ILD+ P Sbjct: 506 AEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPD 565 Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219 + R+ +M++AT+ PA+ +AK Y + V I + + Sbjct: 566 TDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVTIGNIGEAVETV 625 Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 + R VA D+ +N + G IVF + + + + + F V L G Sbjct: 626 EQRVEFVAGEDKRKKRLNEILASGEFQPPIIVFVNIKRNCDAVARDIKHMGFTSVTLHGS 685 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 +Q++R AL +R G V +ATD+A RGID+PD+ LV++ +++N E+ HR GRTGR Sbjct: 686 KTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGR 745 Query: 338 AGRKGMSVFVI 348 AG+ G+++ + Sbjct: 746 AGKSGVAITFL 756 >gi|291407356|ref|XP_002719895.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Oryctolagus cuniculus] Length = 661 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E NV++ Sbjct: 547 ERNVNIT 553 >gi|182627117|ref|ZP_02954835.1| putative membrane protein [Clostridium perfringens D str. JGS1721] gi|177907506|gb|EDT70164.1| putative membrane protein [Clostridium perfringens D str. JGS1721] Length = 324 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 172/311 (55%), Gaps = 7/311 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-P 71 +A+ + G+ + +Q + L D++ AQTG+GKT AFG A+ + N FS Sbjct: 17 KAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIIN-----NADFSGK 71 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 +P AL +APTRELA+QV EL L + V GG + R+ R L+NG IVVGT Sbjct: 72 KKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRALKNGVDIVVGT 131 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGR+ D IR K L ++ + +VLDEADEML++GF DD+E I+ S R+ L+FSAT+ P Sbjct: 132 PGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSATMPP 191 Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+NY K D + I + S I+ + DR + +L + AI+F Sbjct: 192 QIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDEPNAAIIF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C T+ V + + + V + G++SQ R L+ ++G +ATDVAARGID+ Sbjct: 252 CKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDVAARGIDV 311 Query: 311 PDLELVIHAEL 321 + VI+ +L Sbjct: 312 ESVTHVINYDL 322 >gi|229490988|ref|ZP_04384821.1| dead/deah box helicase [Rhodococcus erythropolis SK121] gi|229322104|gb|EEN87892.1| dead/deah box helicase [Rhodococcus erythropolis SK121] Length = 385 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/318 (38%), Positives = 172/318 (54%), Gaps = 8/318 (2%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPASAPLALAIAPTRELAVQVGRELE-- 95 D++ A+TG GKT FG+ L ++ AEN P AL I PTREL +QV R+LE Sbjct: 7 DLIGQARTGMGKTFGFGVPLLHRIVTAENGTAVLDGTPRALIIVPTRELCIQVARDLENA 66 Query: 96 --WL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152 +L G+ V GG + LQ G +VVGTPGRL D L + + + Sbjct: 67 SKYLRVGDRGLQVLPIYGGRPYEAQISALQKGVDVVVGTPGRLLDLANQSHLILGKVGVL 126 Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY--QKDAVRVNIA 210 VLDEADEMLDLGF DIE ++ P KR+ ++FSAT+ I TLA+ + Q +R A Sbjct: 127 VLDEADEMLDLGFLPDIERLMGMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEEA 186 Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270 + H D+ + +L+ G ++F T+ + + LAE F Sbjct: 187 ESSAVHDRTSQHIYRAHALDKAEMVARVLQAEGRGATMIFTRTKRTAQKVADDLAERGFS 246 Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330 V A+ G+L Q R AL+ R+G+ V +ATDVAARGID+ D+ VI+ + + + +H Sbjct: 247 VGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVH 306 Query: 331 RSGRTGRAGRKGMSVFVI 348 R GRTGRAGR G++V ++ Sbjct: 307 RIGRTGRAGRTGIAVTLV 324 >gi|189193121|ref|XP_001932899.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978463|gb|EDU45089.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 606 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/379 (33%), Positives = 216/379 (56%), Gaps = 18/379 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +A+ G+ +T +Q+ + P L +DVL +A+TGSGKT+AF L A +L++ Sbjct: 133 NLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAF-LIPAIEMLSQ 191 Query: 66 NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 RF P + + ++PTRELA+Q V REL +++T +CIGG + E L+ Sbjct: 192 L-RFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQT---FGICIGGANRSAEADKLR 247 Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G ++++ TPGRL DH+ +G +L+++V+DEAD +L++GF D++ I+ P +R+ Sbjct: 248 KGVNLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRILEVGFEDEMRSIIKILPTERQ 307 Query: 182 MLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVN 237 ++FSAT + + LA+ + + + +N+ +HS + L D D + + Sbjct: 308 TMLFSATQTTKVEDLARISLKAGPLYINV-DHRAEHSTVQGLEQGYVLCDSDTRFRLLFS 366 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L+ H K IVF S+ ASV ++++L V+ L G+L QQ R+N + ++ Sbjct: 367 FLKKHQKKKVIVFLSSCASVDFYSELLNYIDLPVLGLHGKLKQQARTNRFFEFVNAQSGT 426 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV-FVIPQNMQRR 355 I TDVAARG+D+P+++ VI + +P + +HR GRT R A KG S+ F++P + Sbjct: 427 LICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLLPSEVG-- 484 Query: 356 AERLFREANVSVVWEPAPS 374 +L +E+ V +V P+ Sbjct: 485 FLKLLKESRVPLVEFELPA 503 >gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua] Length = 644 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 196/357 (54%), Gaps = 11/357 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +++ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ FS Sbjct: 223 VAKSGYVKPTPVQKHGIPIIAAGRDIMACAQTGSGKTAAFLLPILQKLMADGVAASSFSE 282 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GG+S + RDL G +++ GT Sbjct: 283 QQEPEAIIVAPTRELINQIFLEARKFAHGTCVRPVVLYGGISTGHQIRDLLRGCNVLCGT 342 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 PGRL D I RGK + ++ L+ +V+DEAD MLD+GF ++ ++ S S ++R+ LMFS Sbjct: 343 PGRLMDMIGRGK-VGLTKLRYLVMDEADRMLDMGFEPEMRRLVGSPGMPSKEERQTLMFS 401 Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I +A ++ +KD + + + SD++ + V V + + +++IL+ G + Sbjct: 402 ATYPEDIQRMAGDFLKKDYLFLAVGVVGGACSDVEQKLVQVTKFSKRDQLLDILKNTGTE 461 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L ++ G+ Q+ER AL R G+ V +AT VAA Sbjct: 462 RTMVFVETKRQADFIAAFLCRENVATTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 521 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361 RG+D+ D++ V++ +L +N ++ +HR GRTGR G G +V F P+ + A L + Sbjct: 522 RGLDIKDVQHVVNFDLPNNIDDYVHRIGRTGRCGNTGQAVSFYDPEQDNQLARSLVK 578 >gi|74006744|ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) isoform 12 [Canis familiaris] Length = 653 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/362 (33%), Positives = 192/362 (53%), Gaps = 30/362 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + ++ P A Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG----PGEALRAM 254 Query: 75 ---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H++V T Sbjct: 255 KQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 314 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMFSA 187 PGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R +MFSA Sbjct: 315 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 374 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246 T I LA+++ + + + + +I + V V SD+ + ++++L G + Sbjct: 375 TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSL 434 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ L + ++ G+ SQ++R AL R G++ + +AT VAAR Sbjct: 435 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 494 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 G+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F E N++ Sbjct: 495 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNERNIN 542 Query: 367 VV 368 + Sbjct: 543 IT 544 >gi|50291147|ref|XP_448006.1| hypothetical protein [Candida glabrata CBS 138] gi|74661189|sp|Q6FP38|DBP1_CANGA RecName: Full=ATP-dependent RNA helicase DBP1 gi|49527317|emb|CAG60957.1| unnamed protein product [Candida glabrata] Length = 604 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 195/360 (54%), Gaps = 16/360 (4%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-------LAENDRFSP--ASA 74 T VQ+ + + +D++ AQTGSGKT F + S L L E+ R S Sbjct: 162 TPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLSELFLNGPAPLPEHTRHSYMRKCY 221 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P AL +APTRELA+Q+ E + ++ V V GG + ++ RD+ G +++V TPGR Sbjct: 222 PSALVLAPTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRDMDRGCNLLVATPGR 281 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATIS 190 L D + +++ ++K +VLDEAD MLD+GF I I++ S R+ LMFSAT Sbjct: 282 LNDLLERGKISLVNVKYLVLDEADRMLDMGFEPQIRHIVEDCDMPSVNDRQTLMFSATFP 341 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+++ KD + +++ +I + + V D+++A+++IL +VF Sbjct: 342 REIQHLARDFLKDYIFLSVGRVGSTSENIQQKVLFVEDYDKNSALLDILINEIDGLTLVF 401 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + T L F+ A+ G+ +Q ER AL R+G A + +AT VAARG+D+ Sbjct: 402 VETKRMADQLTDFLIVQNFKATAIHGDRTQAERERALHAFRNGIANILVATAVAARGLDI 461 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFREANVSV 367 P++ VI+ +L ++ ++ +HR GRTGRAG G++ N A+ L EAN V Sbjct: 462 PNVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSNSMNIAKELMDLLTEANQEV 521 >gi|255533359|ref|YP_003093731.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346343|gb|ACU05669.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM 2366] Length = 437 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 173/340 (50%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + I AL GY T +QE + L+ +D+L AQTG+GKT AF + + L Sbjct: 7 NLIEPILNALQTEGYTQPTPIQEQAIPSILQNRDLLGCAQTGTGKTAAFAIPMLQLLSKP 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL + PTRELA+Q+ + + V GGV + L G Sbjct: 67 HTNTKIHKVIKALVLTPTRELAIQIEESFKAYGKNLPIRHLVIFGGVGQKAQTDALHRGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + +N+ ++ VLDEAD MLD+GF D++ ++ P KR+ L F Sbjct: 127 DILVATPGRLLDLMNQGFINLRDIEIFVLDEADRMLDMGFIHDVKKVIAKLPAKRQTLFF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I LA + V+V + + I V D+ +++IL+ + Sbjct: 187 SATMPKEIQGLADTILTNPVKVEVTPVSSTAEKIRQEIFYVEKGDKKGLLMHILQDKTIE 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A+VF T+ R K L + + A+ G SQ R AL + R+ +ATD+AA Sbjct: 247 TALVFARTKHGADRIVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRILVATDIAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ +L VI+ EL + PE +HR GRTGRAG G ++ Sbjct: 307 RGIDVDELSHVINYELPNIPETYVHRIGRTGRAGLSGTAL 346 >gi|261822185|ref|YP_003260291.1| ATP-dependent RNA helicase RhlE [Pectobacterium wasabiae WPP163] gi|261606198|gb|ACX88684.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae WPP163] Length = 476 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 191/372 (51%), Gaps = 8/372 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 A+ E+GY + T VQ + L +D++ SAQTG+GKT F L L L + E Sbjct: 15 AIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSREAQHKGKG 74 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA Q+ ++ + V GGVS++ + L+ G I+V T Sbjct: 75 RRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQMMKLRGGVDILVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 135 PGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + V + N + V + + ++ + + +VF Sbjct: 195 EIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQLIGENNWQQVLVFT 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + ++L + A+ G SQ R+ AL +DG RV +ATD+AARG+D+ Sbjct: 255 RTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRVLVATDIAARGLDID 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + + Sbjct: 315 QLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLKREIPRIA 374 Query: 369 ---WEPAPSVEA 377 +EP PS++A Sbjct: 375 VEGYEPDPSIKA 386 >gi|229588539|ref|YP_002870658.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens SBW25] gi|229360405|emb|CAY47262.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] Length = 407 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/348 (34%), Positives = 193/348 (55%), Gaps = 9/348 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F+ P+++ A+ + G+ T +Q +L L KD + AQTG+GKT AF +++ + LL Sbjct: 23 FKLAPELM-HAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLL 81 Query: 64 ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 +R+ P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + Sbjct: 82 QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 139 Query: 121 LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L+ I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K Sbjct: 140 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 199 Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ L+FSAT + + LAK + D V I + N +++ VA +D+ + N Sbjct: 200 AERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYN 259 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ +G + +VF + + V R + L LSG++ Q +R L+ R+G+ RV Sbjct: 260 LVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 319 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVA RGI + + VI+ L P++ +HR GRTGRAG G+S+ Sbjct: 320 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSI 367 >gi|194227826|ref|XP_001491482.2| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box protein 3, X-chromosomal) (Helicase-like protein 2) (HLP2) (DEAD box, X isoform) [Equus caballus] Length = 762 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 300 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 358 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 359 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 418 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 419 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 478 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 479 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 538 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 539 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 598 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 599 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 646 Query: 362 EANVSVV 368 E N+++ Sbjct: 647 ERNINIT 653 >gi|145592945|ref|YP_001157242.1| DEAD/DEAH box helicase domain-containing protein [Salinispora tropica CNB-440] gi|145302282|gb|ABP52864.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440] Length = 621 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/352 (35%), Positives = 189/352 (53%), Gaps = 19/352 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL+ G ++QE L LR D++ A TG+GKT+ FG+ L + F+PA Sbjct: 110 DALNAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLERV------FAPA 163 Query: 73 SA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P AL + PTREL +QV ++L + GV V GGV+ + L+ G I+ Sbjct: 164 EGGDGTPQALVVVPTRELGIQVAKDLHAAGSTRGVRVLPIYGGVAYEPQIEALRTGVEIL 223 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 VGTPGRL D + K L + ++A+VLDEAD MLDLGF DD+E IL P++R+ ++FSAT Sbjct: 224 VGTPGRLLDLAKQKQLKLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEERQTMLFSAT 283 Query: 189 ISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 + I L++ + + V ++ + Q + YR + ++ + IL+ G Sbjct: 284 MPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSL---NKIEIVARILQAKG 340 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 ++F T+ + R L F V A+ G+L Q R AL+ R G+ +ATDV Sbjct: 341 RGLTMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLVATDV 400 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 AARGID+ + V++ + + + HR GRTGRAG G++V FV +M R Sbjct: 401 AARGIDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPR 452 >gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14] gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14] Length = 497 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 179/338 (52%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I EA++++GY + +QE + L KDV+ +AQTG+GKT F L L L N R + Sbjct: 12 ILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLLERL--ANGRPA 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 ++ AL + PTRELA QVG + + AV GGV V+ + ++ GA ++V Sbjct: 70 RSNHVRALVLTPTRELAAQVGESVATYGKNLRLSSAVVFGGVKVNPQMLRMRKGADVLVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + ++ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT S Sbjct: 130 TPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V +++ N+ + V + N + +L K +VF Sbjct: 190 DEIRELAKGLVNNPVEIDVNPRNQTARTVKQWICPVDQKKKPNLLTKLLNERNWKQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ ++ L A+ G SQ R+ AL + G RV +ATD+AARG+D+ Sbjct: 250 TKTKHGANKLATHLESRGVSAAAIHGNKSQGARTKALANFKSGDVRVLVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 310 DQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLV 347 >gi|312081503|ref|XP_003143055.1| ATP-dependent helicase DDX48 [Loa loa] gi|307761780|gb|EFO21014.1| ATP-dependent helicase DDX48 [Loa loa] Length = 399 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 187/334 (55%), Gaps = 19/334 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75 G+ +++Q+ + ++ +DV+ AQ+G+GKT F +A+ +L L E Sbjct: 50 GFEKPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATFSIAVLQSLDISLRETQ-------- 101 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELAVQ+ + + L V CIGG +V + R L G H+V GTPGR+ Sbjct: 102 -ALILSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRV 160 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L +K +VLDEADEML+ GF++ + I P ++++ SAT+ I Sbjct: 161 FDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILE 220 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFC 251 + + D +R+ + + I + VA+ DR+ + + ++ A++FC Sbjct: 221 MTSKFMTDPIRILVKRDELTLEGI--KQFFVAV-DREEWKFDTLCDLYDTLTITQAVIFC 277 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR V + L E F V ++ GE+ Q+ER ++ R G +R+ I+TDV ARG+D+P Sbjct: 278 NTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRLLISTDVFARGLDIP 337 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + LV++ +L +N E +HR GR+GR GRKG+++ Sbjct: 338 QVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAI 371 >gi|198413641|ref|XP_002129468.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 [Ciona intestinalis] Length = 449 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/359 (33%), Positives = 194/359 (54%), Gaps = 18/359 (5%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ E + G+ + +QE + L+ DV+ A+TGSGKT AF + + LL R Sbjct: 30 VLCETCDKLGWKKPSKIQEEAIPVALQGNDVIGLAETGSGKTGAFCIPVLQALLENPQRL 89 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA Q+ + + L + G+ V +GGV + ++ L H+VV Sbjct: 90 ------FALVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGGVDMMGQQIILAKKPHVVV 143 Query: 130 GTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ + KG + +K +VLDEAD +L++ F +++ IL P++RR +FSAT Sbjct: 144 ATPGRLVDHLEKTKGFTLRSIKFLVLDEADRILNMDFESELDTILKVIPRERRTFLFSAT 203 Query: 189 ISPAITTLAKNYQKDAVR--VNIASENRQHS-DIDYRAVLVALS-DRDNAIVNILRYHGA 244 ++ + K Q+ A+ V A N+ H+ D ++ L S D+D + ++ Sbjct: 204 MTGKV----KKLQRAALTKPVKCAVNNKYHTVDKLFQYYLFLPSKDKDCYLAAVVNELAG 259 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+FC T A+ R +L V L G++SQ +R AL + + +ATDVA Sbjct: 260 NAMIIFCGTCANTQRTALILRNLGISAVPLHGQMSQAKRLGALNKFKSATKSILVATDVA 319 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 +RG+D+P +++VI+ ++ + ++ +HR GRT RAGR G SV + Q + +R E L Sbjct: 320 SRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVTQYDVELYQRIEELI 378 >gi|192359487|ref|YP_001981876.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107] gi|190685652|gb|ACE83330.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus Ueda107] Length = 493 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 207/369 (56%), Gaps = 10/369 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A++E+GY T VQ+A + L K++LVS++TGSGKT AF L +LA++ +P Sbjct: 41 KAIAEQGYEQPTEVQQAAIPRALEGKNLLVSSKTGSGKTAAFLLPCLQQILAQS-AVNPR 99 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L L + PTRELA Q+ + + L T + V GG + ++ L+ IVV TP Sbjct: 100 STRL-LILTPTRELARQIVKNAQSLLRFTSIKVGSICGGEELRYQKALLRKNPEIVVATP 158 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SP 191 GRL +H+ K + S L+ +VLDEAD MLD+G +D+ I++S R+ L+FSAT+ Sbjct: 159 GRLAEHVAHKSTDFSGLEFLVLDEADRMLDMGLSEDVLKIVESCDAARQTLLFSATLEQK 218 Query: 192 AITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAI 248 + L K +A + I + Q I+ + VL A D+ + V +L + AI Sbjct: 219 GLRHLIKQVITGEAEEIYIEDSSNQ---IEQQMVL-ADDDKHKERLAVALLNRAEYQKAI 274 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF +T+ S+ +L + + AL G+++Q +R L+ R G+ RV +ATDVAARG+ Sbjct: 275 VFVNTKVRASQLDNILRYNQLRSTALHGDITQDDRKRVLEAFRQGKTRVLVATDVAARGL 334 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 D+ ++LVI+ E++ + + LHR GRTGRA + G +V + + + + R VS+ Sbjct: 335 DIDGVDLVINLEMAHSGDEYLHRVGRTGRADQPGRAVSFVSASEWNLTKSIERYLKVSLQ 394 Query: 369 WEPAPSVEA 377 P +EA Sbjct: 395 TIQIPGLEA 403 >gi|170578338|ref|XP_001894368.1| ATP-dependent helicase DDX48 [Brugia malayi] gi|158599081|gb|EDP36794.1| ATP-dependent helicase DDX48, putative [Brugia malayi] Length = 399 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 187/334 (55%), Gaps = 19/334 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75 G+ +++Q+ + ++ +DV+ AQ+G+GKT F +A+ +L L E Sbjct: 50 GFEKPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATFSIAVLQSLDISLRETQ-------- 101 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELAVQ+ + + L V CIGG +V + R L G H+V GTPGR+ Sbjct: 102 -ALILSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRV 160 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L +K +VLDEADEML+ GF++ + I P ++++ SAT+ I Sbjct: 161 FDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILE 220 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFC 251 + + D +R+ + + I + VA+ DR+ + + ++ A++FC Sbjct: 221 MTSKFMTDPIRILVKRDELTLEGI--KQFFVAV-DREEWKFDTLCDLYDTLTITQAVIFC 277 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR V + L E F V ++ GE+ Q+ER ++ R G +R+ I+TDV ARG+D+P Sbjct: 278 NTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRLLISTDVFARGLDIP 337 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + LV++ +L +N E +HR GR+GR GRKG+++ Sbjct: 338 QVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAI 371 >gi|114320766|ref|YP_742449.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227160|gb|ABI56959.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 427 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/321 (35%), Positives = 181/321 (56%), Gaps = 1/321 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ A++E+GY T VQ + L+ DV+ +AQTG+GKT F L + L++N Sbjct: 11 VLLRAVAEQGYSKPTPVQAQAIPAILQGGDVMAAAQTGTGKTAGFTLPMLER-LSQNRPE 69 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL + PTRELA QV ++ K + AV GGV ++ + + L+ G IVV Sbjct: 70 GGRRRVRALILTPTRELAAQVRDSVKTYGGKLPLKTAVIFGGVGMNPQIQTLRRGVDIVV 129 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH+ +++S ++ +VLDEAD MLD+GF DI ++ + PK+R+ LMFSAT Sbjct: 130 ATPGRLLDHMGQGTVDLSGVEMLVLDEADRMLDMGFIRDIRRVIAAVPKQRQTLMFSATF 189 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LA+ ++ ++ +A+ N +++ R V+ ++ + N+++ + +V Sbjct: 190 SKEIRQLAEGMLRNPTQIEVAARNTAAENVNQRVHPVSRGEKRALLSNLIQDGDWRQVLV 249 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ R + L + A+ G SQ R+ AL + GR RV +ATD+AARG+D Sbjct: 250 FTRTKHGADRLARQLDQDGLSSAAIHGNKSQSARTKALAQFKQGRVRVLVATDIAARGLD 309 Query: 310 LPDLELVIHAELSSNPENLLH 330 + L V++ EL + PE+ +H Sbjct: 310 IDQLPHVVNYELPNVPEDYVH 330 >gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii] Length = 816 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 184/341 (53%), Gaps = 15/341 (4%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------AENDRFS 70 Y T VQ+ + +++D++ AQTGSGKT +F + + S + +N+R + Sbjct: 354 YTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQMFLDGQPEFIREQNNRNN 413 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129 P+AL +APTRELA Q+ E ++ V V GG + + RDL + G H++V Sbjct: 414 RKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGADIGAQMRDLPERGCHLLV 473 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMF 185 TPGRL D + + + H++ VVLDEAD MLD+GF I I+ D+ P RR LMF Sbjct: 474 ATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRRIVEKDTMPPTGDRRTLMF 533 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I LA+++ + + + + +I + V V D+ + ++++L G Sbjct: 534 SATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVVWVEEPDKRSFLLDLLNASGPD 593 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VF T+ L + + G+ SQ+ER AL+ R G+ V +AT VA Sbjct: 594 SLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRSGKTPVLVATAVA 653 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+D+P+++ VI+ +L S+ E +HR GRTGR G G++ Sbjct: 654 ARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 694 >gi|84393643|ref|ZP_00992394.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01] gi|84375711|gb|EAP92607.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01] Length = 436 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 187/343 (54%), Gaps = 6/343 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--A 64 +PQVI E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL Sbjct: 17 LPQVI-EGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTP 75 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 E++ P + P A+ +APTRELA+Q+ + + L TG+ A+ GG S ++ ++ G Sbjct: 76 EHEGRKP-NQPRAIIMAPTRELAIQIYNDADSLVESTGIKAALAYGGESYDKQLGKIEEG 134 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRM 182 A I++GT GR+ D + K N++H++AVVLDEAD M DLGF DI F+ PK R Sbjct: 135 ADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLN 194 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 ++FSAT+S + LA + + V + E + I + + + ++ Sbjct: 195 MLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSNEHKMALLQTLIEEE 254 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 AI+F +T+ LA +V L+G++ Q++R L+ G + +ATD Sbjct: 255 WPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDLLVATD 314 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 315 VAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSI 357 >gi|87198262|ref|YP_495519.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM 12444] gi|87133943|gb|ABD24685.1| DEAD/DEAH box helicase-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 498 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 182/346 (52%), Gaps = 6/346 (1%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I AL +GY + T +Q + L +D+L AQTG+GKT AF L L A Sbjct: 11 EPILRALETKGYNDPTPIQRQAIPALLEGRDLLGIAQTGTGKTAAFALPSLHRLAANPQP 70 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 PAS + L ++PTRELA Q+ ++ ++V GGV + ++ R L G I+ Sbjct: 71 RKPASCRM-LVLSPTRELAAQIADNMKGYARNLNLIVDCVFGGVPIGKQARRLVPGVDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D I + L + + VLDEAD+M+DLGF ++ + + PK R+ L FSAT Sbjct: 130 VATPGRLLDLIDNRALTLGRTEIFVLDEADQMMDLGFIHALKRVANLLPKTRQSLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILRYHGA 244 + AI L K + + VRV +A + ++ + +++ + ++L+ Sbjct: 190 MPKAIEDLGKQFIVNPVRVEVAPNSTTAERVEQYVTFINQAEKQALLTLRIRDLLKTKEL 249 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A+VF T+ R + L+ A+ G SQ +R+ AL+ R G V +ATD+A Sbjct: 250 DRALVFTRTKHGADRVVRHLSSAGIDARAIHGNKSQAQRTAALEAFRQGSCPVLVATDIA 309 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 ARGID+ + V + EL + PE +HR GRT RAG G+++ F P Sbjct: 310 ARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGIAISFCAP 355 >gi|32565321|ref|NP_498260.2| DEAD boX helicase homolog family member (ddx-23) [Caenorhabditis elegans] gi|14550364|gb|AAK67224.1|U13070_15 Hypothetical protein F01F1.7 [Caenorhabditis elegans] Length = 730 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/374 (32%), Positives = 191/374 (51%), Gaps = 29/374 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64 P + +A+ E GY+ T +Q + L+ +DV+ A+TGSGKT AF L L T L Sbjct: 308 FPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 367 Query: 65 ENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + +R P A+ +APTRELA Q+ E G+ IGG S + L+ Sbjct: 368 KMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRM 427 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177 G +V+ TPGRL D + + L ++ V+LDEAD MLD+GF D++ +L+ P Sbjct: 428 GVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKK 487 Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218 K R+ +MF+AT+S AI LA+ Y + V+I S + Sbjct: 488 DTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTER 547 Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278 ++ +V + +V +L I+F + + +K L + F+ L G Sbjct: 548 VEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGK 607 Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338 Q +R ALQ +++G + + +ATDVA RGID+ D+ LV++ +++ + E+ HR GRTGRA Sbjct: 608 GQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRA 667 Query: 339 GRKGMSV-FVIPQN 351 G+ G ++ F+ P + Sbjct: 668 GKHGKAITFLTPDD 681 >gi|84684138|ref|ZP_01012040.1| hypothetical protein 1099457000262_RB2654_16856 [Maritimibacter alkaliphilus HTCC2654] gi|84667891|gb|EAQ14359.1| hypothetical protein RB2654_16856 [Rhodobacterales bacterium HTCC2654] Length = 439 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 190/355 (53%), Gaps = 12/355 (3%) Query: 1 MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57 M F ++ P+++ A+ GY + +Q + L DVL AQTG+GKT AFGL Sbjct: 1 MTTFNDLGLDPKLLA-AVKAAGYQTPSPIQVQAIPHALAGTDVLGLAQTGTGKTAAFGLP 59 Query: 58 LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L LL +D+ P AL +APTREL Q+ L T + V +GG S++++ Sbjct: 60 LVQQLLGGHDKREPKGV-RALVLAPTRELVNQIADNLIAYVKGTHIKVNTVVGGKSINKQ 118 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 + L G I+V TPGRL D + K + + +VLDEAD+MLD+GF + I Sbjct: 119 VQILAKGTDILVATPGRLIDLMDRKAVRLDTATFLVLDEADQMLDMGFIHALRRIAPELG 178 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ ++FSAT+ + L++ Y D V+V +A+ + I + V A D ++ Sbjct: 179 TPRQTMLFSATMPKQMEELSRAYLTDPVKVQVAAPGKAADKI-TQGVHWAQDKGDK--ID 235 Query: 238 ILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 IL+ + + ++VF T+ R K L F V++ G SQ +R AL RDG Sbjct: 236 ILKAYLSDEPDGLSLVFARTKHGAERLMKQLCASGFDAVSIHGNKSQGQRDRALAAFRDG 295 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ARV +ATDVAARGID+P + V + +L + EN +HR GRT RAG G ++ ++ Sbjct: 296 KARVLVATDVAARGIDIPGVSHVFNFDLPNVAENYVHRIGRTARAGADGDAISLV 350 >gi|301755322|ref|XP_002913508.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Ailuropoda melanoleuca] Length = 654 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|281207583|gb|EFA81766.1| putative RNA helicase [Polysphondylium pallidum PN500] Length = 802 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/377 (32%), Positives = 198/377 (52%), Gaps = 9/377 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 + P I + + G+ T++Q L+ +D++ A+TGSGKT+AF L + A+ Sbjct: 404 HFPPYIMKEIVAAGFAAPTAIQAQSWPVALKGRDMIGLAETGSGKTLAFLLPGVVHINAQ 463 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P P+ L +APTRELA+Q+ E + + + + GGV ++ L++G Sbjct: 464 -PFLEPNDGPIMLVLAPTRELAMQIQAECDKFGSSSKIKNCAVYGGVPKFQQTSQLRSGV 522 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL D + + N+ + +VLDEAD MLD+GF D I IL R+ LMF Sbjct: 523 EIVIATPGRLIDLLETRKTNLKRVTYLVLDEADRMLDMGFEDQIRKILSQIRPDRQTLMF 582 Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT + +LA ++ KD +++ I S E + ++ + +D+ + + L G Sbjct: 583 SATWPKVVQSLANDFLKDPIQIKIGSAELSANHNVKQIIEICEKNDKQQRLFSFLEKVGD 642 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + I+F T+ V+ + + F+ + G+ +Q ER +LQ + ++ IATDVA Sbjct: 643 EKCIIFMETKNGVNLLQRNMQVAGFKCAGIHGDKTQGERDYSLQQFKKSGIQMLIATDVA 702 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--- 361 +RG+D+ D++ VI+ + + E+ +HR GRTGRAG G + + N R A L Sbjct: 703 SRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAFTLFTTNDMRLAGELITVLI 762 Query: 362 EANVSVVWEPAPSVEAI 378 EAN V PS+E + Sbjct: 763 EANQYV----PPSLEQM 775 >gi|73620773|sp|Q4R3Q1|IF4A3_MACFA RecName: Full=Eukaryotic initiation factor 4A-III; Short=eIF-4A-III; Short=eIF4A-III; AltName: Full=ATP-dependent RNA helicase DDX48; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD box protein 48; AltName: Full=Eukaryotic translation initiation factor 4A isoform 3 gi|67971846|dbj|BAE02265.1| unnamed protein product [Macaca fascicularis] Length = 411 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +AP RELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G +RV I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378 >gi|28899776|ref|NP_799381.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD 2210633] gi|153839108|ref|ZP_01991775.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810] gi|260362509|ref|ZP_05775435.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030] gi|260877189|ref|ZP_05889544.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034] gi|260897233|ref|ZP_05905729.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466] gi|260901365|ref|ZP_05909760.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037] gi|32363280|sp|Q87KH5|RHLB_VIBPA RecName: Full=ATP-dependent RNA helicase rhlB gi|28808028|dbj|BAC61265.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD 2210633] gi|149747404|gb|EDM58368.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810] gi|308088928|gb|EFO38623.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466] gi|308094139|gb|EFO43834.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034] gi|308107202|gb|EFO44742.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037] gi|308112656|gb|EFO50196.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030] gi|328471326|gb|EGF42225.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 10329] Length = 437 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 187/342 (54%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65 PQV E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL E Sbjct: 18 PQVT-EGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ LQ+G Sbjct: 77 HEGRQP-TQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 I++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S + LA + + V + + I + D+ + ++ Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPAQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AIVF +T+ LA +V L+G++ Q++R L+ G + +ATDV Sbjct: 256 PDRAIVFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus sp. RS-1] gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1] Length = 467 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 188/362 (51%), Gaps = 10/362 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F PQ+ + + GY T +QE ++ L +DV+ AQTG+GKT AF L + L+ Sbjct: 6 FRFHPQITA-GIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQRLM 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P A+ + PTRELA Q+ +E L TG+ GGV + + L+ Sbjct: 65 R-----GPRGRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRLRR 119 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G I V PGRL DH+ L + HL ++LDEAD+M D+GF D+ IL +P +R+ + Sbjct: 120 GVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTM 179 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI LA+ ++ + I + S + + VA + ++ +LR+ Sbjct: 180 LFSATMPDAIRALAREALREPQTIQIG-RSAPVSTVTHAIYPVAEHLKTALLIELLRHTD 238 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F T+ + LA ++ AL G +SQ R AL R GR ++ +ATD+ Sbjct: 239 TGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATDI 298 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360 AARGID+ + VI+ ++ E HR GRTGRA R G + ++ ++ M R ERL Sbjct: 299 AARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERLI 358 Query: 361 RE 362 E Sbjct: 359 GE 360 >gi|74006728|ref|XP_850382.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) isoform 2 [Canis familiaris] Length = 663 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421] gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421] Length = 384 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 181/339 (53%), Gaps = 6/339 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + G+ T +Q + P L +DVL A TGSGKT AF L + L+A+ P S Sbjct: 15 AVEQLGFTQPTPIQTLAIPPALAGRDVLACAMTGSGKTAAFLLPILQQLIAQ-----PRS 69 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+ L L + + A IGGVS + R G +++GTPG Sbjct: 70 TTRALVLTPTRELAGQIEMHLGQLARYSALRGASIIGGVSPEPQARAFHKGVEVLIGTPG 129 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH +++L+ +VLDEAD ML++GF DI IL + +R+ L FSAT+ I Sbjct: 130 RLLDHFDQPYARLANLEILVLDEADRMLEMGFLPDIRRILRHTGHRRQTLFFSATMPGPI 189 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA ++ V +N + I + VA + + ++ +L G + IVF T Sbjct: 190 AKLATEILRNPVTLNQERKAAPAVGITHSVYPVAQNLKSKFLLELLEREGMRQVIVFTRT 249 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R ++ L++ + G SQ +R+ AL + G+ RV +ATD+A+RGID+ L Sbjct: 250 KHRANRLSEYLSKARISCERIHGNRSQGQRTEALAGFKSGKYRVLVATDIASRGIDIEAL 309 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351 V++ ++ E+ +HR GRT RA R G + FV P+ Sbjct: 310 GHVVNFDVPQAAEDYIHRVGRTARAERTGDAFTFVSPEE 348 >gi|330926789|ref|XP_003301614.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1] gi|311323488|gb|EFQ90287.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1] Length = 1053 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 214/373 (57%), Gaps = 18/373 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +A+ G+ +T +Q+ + P L +DVL +A+TGSGKT+AF L A +L++ Sbjct: 580 NLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAF-LIPAIEMLSQ 638 Query: 66 NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 RF P + + ++PTRELA+Q V REL +++T +CIGG + E L+ Sbjct: 639 L-RFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQT---FGICIGGANRSAEAEKLR 694 Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 G ++++ TPGRL DH+ +G +L+++V+DEAD +L++GF D++ I+ P +R+ Sbjct: 695 KGVNLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRILEVGFEDEMRSIIKILPTERQ 754 Query: 182 MLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVN 237 ++FSAT + + LA+ + + + +N+ +HS + L D D + + Sbjct: 755 TMLFSATQTTKVEDLARISLKAGPLYINV-DHRAEHSTVQGLEQGYVLCDSDTRFRLLFS 813 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 L+ H K IVF S+ ASV ++++L V+ L G+L QQ R+N + ++ Sbjct: 814 FLKKHQKKKVIVFLSSCASVDFYSELLNYIDLPVLGLHGKLKQQARTNRFFEFVNAQSGT 873 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV-FVIPQNMQRR 355 I TDVAARG+D+P+++ VI + +P + +HR GRT R A KG S+ F++P + Sbjct: 874 LICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLLPSEVGFL 933 Query: 356 AERLFREANVSVV 368 +L +E+ V +V Sbjct: 934 --KLLKESRVPLV 944 >gi|260772127|ref|ZP_05881044.1| ATP-dependent RNA helicase DbpA [Vibrio metschnikovii CIP 69.14] gi|260612994|gb|EEX38196.1| ATP-dependent RNA helicase DbpA [Vibrio metschnikovii CIP 69.14] Length = 389 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 171/297 (57%), Gaps = 3/297 (1%) Query: 77 ALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL + PTRELA QV E+ L A + + GG+ + + L++GAHI+VGTPGR+ Sbjct: 3 ALVLCPTRELADQVATEIRTLGRAIHNIKILTLCGGMPMGPQIGSLEHGAHILVGTPGRI 62 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 DH+ +++S L +VLDEAD ML++GF+D ++ I+ +P R+ L+FSAT I Sbjct: 63 LDHLEKGRIDLSELNTLVLDEADRMLEMGFQDALDAIIAQAPTVRQTLLFSATFPAQIKQ 122 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255 +A+ ++ V + S + + Y L RD A+ +L +H ++A+VFC+T+ Sbjct: 123 VAERIMRNPEMVKVESTHSSTTIKQYFYKLEGAEARDKALAQLLLHHQPESAVVFCNTKK 182 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 V+ + L F V+ L G+L Q++R AL + + +ATDVAARG+D+ +L+ Sbjct: 183 EVTHVAEQLKHKGFSVIELHGDLEQRDRDQALVQFANKSISILVATDVAARGLDVDNLDA 242 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 V + ELS +PE +HR GRTGRAG +G+++ N R + ++ + EPA Sbjct: 243 VFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDNEMHRVAMIDEYMDMPI--EPA 297 >gi|21555870|gb|AAM63951.1| Eukaryotic initiation factor 4A, putative [Arabidopsis thaliana] Length = 412 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D FS AL Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKX 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV V E PS Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 406 >gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503] gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503] Length = 426 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 192/360 (53%), Gaps = 11/360 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L + + T VQE + L KD++ AQTG+GKT A+ L + + L + P Sbjct: 14 DGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL---SKGCHPT 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAHIV 128 A A+ +APTRELA Q+ ++++ V AV + G++ +++R L+ GA IV Sbjct: 71 DAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIV 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL HI+ +++S + VLDEAD MLD+GF DDI + P + +MFSAT Sbjct: 131 IATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSAT 190 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P I TLAK KD V IA +R I A + + + ++ + I Sbjct: 191 MPPKIRTLAKTILKDPEEVKIAI-SRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F S++ V L F V A+ +L Q +R ++ + G + +ATDV ARGI Sbjct: 250 IFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGI 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL--FREANV 365 D+ D++LV++ ++ +PE+ +HR GRT R +G+++ + + Q + +R+ F E V Sbjct: 310 DINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEV 369 >gi|21229902|ref|NP_635819.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766780|ref|YP_241542.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|188989854|ref|YP_001901864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. B100] gi|21111409|gb|AAM39743.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572112|gb|AAY47522.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167731614|emb|CAP49789.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris] Length = 430 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 187/351 (53%), Gaps = 11/351 (3%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V AL+ G LT +Q A++ P L +D++ +AQTGSGKT+A+ L L L Sbjct: 15 VFESALARAGVRALTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQQRLQ----- 69 Query: 70 SPASAPLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124 +P AP L + PTREL QV L L A + + GG +++ + L+ G Sbjct: 70 APEQAPRVLGGLILVPTRELVAQVAHTLLSLAAALPRRLKIVAATGGEAINPQLMALRGG 129 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 A IV+ TPGRL D + L +S + +VLDEAD +LDLGF +++ IL P +R+ ++ Sbjct: 130 ADIVIATPGRLLDLVTHNALRLSQVSTLVLDEADRLLDLGFGAELDRILALLPAQRQSVL 189 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 SAT AI +LAK +D +R+ + Q I RA+ V R + ++L HG Sbjct: 190 VSATFPAAIASLAKRRLRDPLRITLGGTPEQAPAIAQRAIAVDAGQRTQLLRHLLLEHGW 249 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +VF ++R + + L++ + L GELSQ R L+ + +V +ATD+A Sbjct: 250 PQLLVFVTSRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLA 309 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 RGID+ L V++ +L + + HR GRT RAG G+++ FV + Q+ Sbjct: 310 GRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 360 >gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris DX-1] Length = 473 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 174/336 (51%), Gaps = 3/336 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL E Y+ T +Q + L +DV+ AQTG+GKT +F L + LL +R Sbjct: 19 ISRALKEENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHRLL--QNRIK 76 Query: 71 PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P S L ++PTREL+ Q+ + + IGGV + R+ R L G ++V Sbjct: 77 PTSKTCRVLVLSPTRELSGQILDSFNAYGRHIHLTATLAIGGVPMGRQVRSLMGGVDVLV 136 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D ++G L ++ ++ +VLDEAD MLD+GF +DI I+ P KR+ L FSAT+ Sbjct: 137 ATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATM 196 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 I LA+ +D RV + + I+ R + + S + + +L+ A+V Sbjct: 197 PKDIADLAEQMLRDPARVAVTPVSSTVERINQRVIQLDHSAKPAVLAQLLKDEKVNQALV 256 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ + K LA A+ G SQ R L R G R +ATD+AARGID Sbjct: 257 FTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTLVATDIAARGID 316 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + + V + +L + PE +HR GRT RAG G ++ Sbjct: 317 VDGVSHVFNFDLPNIPETYVHRIGRTARAGADGTAI 352 >gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 496 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I +A Y T +Q + P L D++ AQTGSGKT AF + + + L + Sbjct: 131 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 189 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 190 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184 I++ TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P ++R + Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 363 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F T+A+ R + + F AL G+L+Q +R AL + + G+ + +ATDVA Sbjct: 364 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 423 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++V++ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 424 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 469 >gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis] Length = 546 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/352 (34%), Positives = 185/352 (52%), Gaps = 11/352 (3%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 ++ FE+ IG+ GY T VQ+ + L +D++ AQTGSGKT AF L + Sbjct: 98 VEFFESTKATIGKC----GYKRPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLLPAIT 153 Query: 61 TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 L+ E + +P L I+PTREL +Q+ E T V GG +V + Sbjct: 154 KLIKEQVPGGSQAETQSPQVLIISPTRELTLQIYNEARKFTHGTMYRPVVAYGGTAVGYQ 213 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--S 175 + L+ G +I+VGTPGRL D + + + + ++LDEAD MLD+GF +I I+ S Sbjct: 214 LKQLEGGCNILVGTPGRLLDFLNRGQVQLDQISVLILDEADRMLDMGFEPEIRKIVSNYS 273 Query: 176 SPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 P+ KR+ LMFSAT I +A + + + + + SDI R + V + Sbjct: 274 MPETGKRQTLMFSATFPEEIQRIANEFLSNYLFLTVGRVGGATSDITQRIIEVDEFGKRE 333 Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 + IL G +VF T+ + L++ F ++ G+ Q+ER AL+ R G Sbjct: 334 KLSEILSATGVDRTLVFVETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRDFRSG 393 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 A V +AT VAARG+D+PD++ V++ +L +N E +HR GRTGR G +G++ Sbjct: 394 LAPVLVATSVAARGLDIPDVKHVVNYDLPNNIEEYVHRIGRTGRIGNQGLAT 445 >gi|224285398|gb|ACN40422.1| unknown [Picea sitchensis] Length = 428 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/350 (33%), Positives = 187/350 (53%), Gaps = 7/350 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + + P AL Sbjct: 57 GFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATF----CSGILQQLNYNVPECQ--AL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V V C+GG S+ + R LQ G H+VVGTPGR+ D Sbjct: 111 VLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L +K VLDEADEML GF+D I I P ++ +FSAT+ P + + Sbjct: 171 LRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVGVFSATMPPEALEITR 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 231 KFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 291 DWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + R NV + Sbjct: 351 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQRFYNVVI 400 >gi|254506018|ref|ZP_05118163.1| ATP-dependent rna helicase, dead box family [Vibrio parahaemolyticus 16] gi|219551241|gb|EED28221.1| ATP-dependent rna helicase, dead box family [Vibrio parahaemolyticus 16] Length = 454 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/328 (35%), Positives = 186/328 (56%), Gaps = 5/328 (1%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q+ + + KD+L S++TGSGKT+AF L + L ++ FS A P A+ +APT Sbjct: 36 TEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KSKAFS-AKDPRAVILAPT 93 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA QV EL + A + +GG + + + + L+ +V TPGRL DH+ + Sbjct: 94 RELAKQVYGELRTMLAGLSYDATLIVGGENFNDQVKALRKYPKFIVATPGRLADHLEHRS 153 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKNYQ 201 L + L+ +VLDEAD MLDLGF ++ I +++ +RR LMFSAT+ A + +A Sbjct: 154 LFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAEVNDIAFEML 213 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260 R+ + N +H DI + L D AI+ +L+ K I+F +TRA R Sbjct: 214 NAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLQEAEYKQIIIFTATRADTDRL 273 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T+ L E + +ALSG L+Q +R+ + ++ + TDVA+RG+D+ ++ VI+ + Sbjct: 274 TEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHVINFD 333 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + + E +HR GRTGRAG KG ++ ++ Sbjct: 334 MPKHTEEYVHRVGRTGRAGNKGDAISLV 361 >gi|115840564|ref|XP_785431.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Strongylocentrotus purpuratus] Length = 360 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/330 (33%), Positives = 183/330 (55%), Gaps = 7/330 (2%) Query: 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76 E G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +++ L + Sbjct: 4 ELGFEKPSAIQQRAIKPVVKGRDVIAQAQSGTGKTATFSISILQCLDTQ------VRETQ 57 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 AL ++PTRELA Q+ + + L V CIGG +V + R L G H+V GTPGR+ Sbjct: 58 ALILSPTRELANQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDFGQHVVSGTPGRVF 117 Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196 D IR + L +K +VLDEADEML+ GF++ I + P ++++FSAT+ I + Sbjct: 118 DMIRRRNLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLFSATLPHEILEM 177 Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRA 255 + D +R+ + + I V V + + + + ++ A++FC+T+ Sbjct: 178 TSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 237 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 V T+ + E F V ++ G++ Q+ER ++ R G +RV I TDV ARG+D+ + L Sbjct: 238 KVDWLTEKMREANFTVSSMHGDMPQKEREAIMKEFRSGASRVLITTDVWARGLDVQQVSL 297 Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VI+ +L +N E +HR GR+GR GRKG+++ Sbjct: 298 VINYDLPNNRELYIHRIGRSGRYGRKGVAI 327 >gi|313202794|ref|YP_004041451.1| dead/deah box helicase domain protein [Paludibacter propionicigenes WB4] gi|312442110|gb|ADQ78466.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes WB4] Length = 453 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 180/331 (54%), Gaps = 12/331 (3%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWL 97 D++ AQTG+GKT AF + + ++ +P + AL + PTREL QV RE +L Sbjct: 41 DLVAVAQTGTGKTAAFSIPILQSV-------NPLLPQIQALVLVPTRELGQQVAREF-FL 92 Query: 98 YAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155 ++K + V GG + + + L+ H+VV TPGRL D + K L++ HLK +VLD Sbjct: 93 FSKYLSRVFAEAVYGGAPIEDQIQKLKRPTHVVVATPGRLIDLLERKALSLDHLKYLVLD 152 Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENR 214 EADEM+++GF+D I+ IL+S K ++F+AT+ + + Y + ++I +E Sbjct: 153 EADEMMNMGFKDGIDRILESCNKNITKMLFTATMPADVKHIISKYLRPGFAEIHINAEEF 212 Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274 + +I++ +L ++ + L H + I FC T+ R K LA + AL Sbjct: 213 INRNIEHSYLLYKQGEKLEYLKAFLSGHADERGIAFCRTKLDAKRLAKQLAGCIVSADAL 272 Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334 G L+Q+ R ++ + G + +ATD+AARGID+ DL+ ++H L E HRSGR Sbjct: 273 HGNLNQEMRDKVMRAFKRGSINLLVATDIAARGIDVKDLDYIVHYSLPEKTEQYTHRSGR 332 Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 T RAG+ G+SV + ++ L E N+ Sbjct: 333 TARAGKSGISVCLATKDQLEDIHTLQSELNI 363 >gi|168017610|ref|XP_001761340.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687346|gb|EDQ73729.1| predicted protein [Physcomitrella patens subsp. patens] Length = 589 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/368 (32%), Positives = 192/368 (52%), Gaps = 19/368 (5%) Query: 11 IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +G AL+E Y T VQ + L +D++ AQTGSGKT AF + + ++ Sbjct: 148 LGPALNENIRRCKYTKPTPVQRYAIPISLHGRDLMACAQTGSGKTAAFCFPIIAGIMRNT 207 Query: 67 ----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 R + PLAL ++PTREL+ Q+ E + +TG+ V VC GG VH + R+++ Sbjct: 208 PPGRSRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIKVVVCYGGAPVHNQLREME 267 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK- 178 G I+V TPGRL D + +++S ++ + LDEAD MLD+GF I I +D P Sbjct: 268 RGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQMDMPPAG 327 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT I LA ++ + + + + I R V SD+ + ++++ Sbjct: 328 ERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQRVEYVQDSDKRSMLMDL 387 Query: 239 LRYHGA-------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 + A +VF T+ L F + G+ SQQER +AL+ R Sbjct: 388 IHAQSALAPPGQQSLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREHALRSFR 447 Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 G + +ATDVAARG+D+P + V++ +L S+ ++ +HR GRTGRAG+ G++ + Sbjct: 448 TGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVATAFFNEK 507 Query: 352 MQRRAERL 359 Q A L Sbjct: 508 DQSLARSL 515 >gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi] Length = 490 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/368 (31%), Positives = 198/368 (53%), Gaps = 13/368 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 + +Q + L KD++ A+TGSGKT AF L + LL R+ A+ + PT Sbjct: 72 SKIQREAIPLALNGKDIIGLAETGSGKTAAFALPILQALLDNPQRY------FAVVLTPT 125 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142 RELA Q+ + E L GV V +GG+ + + L HI++ TPGRL DH+ K Sbjct: 126 RELAYQISEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHIIIATPGRLVDHLENTK 185 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G + LK +V+DEAD +L++ F ++ IL P++RR +FSAT++ + L + + Sbjct: 186 GFGLKALKYLVMDEADRILNMDFEVEVNKILRVIPRERRTFLFSATMTKKVKKLERASLR 245 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 D V+V ++S+ + + + + +D +V+IL + ++FCST + R Sbjct: 246 DPVKVEVSSKYQTVDKLLQYYIFIPAKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTAL 305 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 +L V L G+++Q +R AL + ++ I+TDVA+RG+D+P +++V++ ++ Sbjct: 306 MLRALGLAAVPLHGQMTQNKRLAALNKFKSQTRQILISTDVASRGLDIPHVDVVLNLDIP 365 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAIR 379 + ++ +HR GRT RAGR G ++ + Q + +R E L + E V A++ Sbjct: 366 MHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHLLSKKLPEYKCEE-DEVMALQ 424 Query: 380 ER--DAQR 385 ER +AQR Sbjct: 425 ERVAEAQR 432 >gi|78223770|ref|YP_385517.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15] gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15] Length = 451 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 187/342 (54%), Gaps = 7/342 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 K F PQV+ ++ GY T +Q + + +DV+ AQTG+GKT AF L + Sbjct: 3 FKEFNLHPQVMA-GVTAAGYTTPTPIQAQAIPTVMEGRDVMGLAQTGTGKTAAFALPILH 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L A+ +R AL IAPTRELA Q+ L +T + GGV+V+ + + Sbjct: 62 RL-AQGER----GRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVNVNPQIQK 116 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ GA IVV PGRL DH+ +++SHL+ +VLDEAD+M D+GF D+ IL P KR Sbjct: 117 LKAGAEIVVACPGRLLDHMAQGTIDLSHLEVLVLDEADQMFDMGFLPDLRRILKQLPPKR 176 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT+ I LA+ +D V V + + + + + V + ++ +LR Sbjct: 177 QTLLFSATMPIDIRVLAQEILRDPVTVQVGTVAPAVT-VTHALYPVEQHLKTPLLLELLR 235 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + ++ ++F T+ R + + + ++ +L G LSQ R AL RDG ++ +A Sbjct: 236 HTDTESVLIFTRTKHRAKRLGEQMEKAGYKAASLQGNLSQNRRQAALDGFRDGTFQILVA 295 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 TD+AARGID+ + VI+ ++ E +HR GRTGRA R G Sbjct: 296 TDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSG 337 >gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii] Length = 771 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 184/341 (53%), Gaps = 15/341 (4%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------AENDRFS 70 Y T VQ+ + +++D++ AQTGSGKT +F + + S + +N+R + Sbjct: 309 YTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQMFLDGQPEFIREQNNRNN 368 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129 P+AL +APTRELA Q+ E ++ V V GG + + RDL + G H++V Sbjct: 369 RKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGADIGAQMRDLPERGCHLLV 428 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMF 185 TPGRL D + + + H++ VVLDEAD MLD+GF I I+ D+ P RR LMF Sbjct: 429 ATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRRIVEKDTMPPTGDRRTLMF 488 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT I LA+++ + + + + +I + V V D+ + ++++L G Sbjct: 489 SATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVVWVEEPDKRSFLLDLLNASGPD 548 Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VF T+ L + + G+ SQ+ER AL+ R G+ V +AT VA Sbjct: 549 SLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRSGKTPVLVATAVA 608 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+D+P+++ VI+ +L S+ E +HR GRTGR G G++ Sbjct: 609 ARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 649 >gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252] Length = 453 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRTLILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|294814858|ref|ZP_06773501.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064] gi|326443235|ref|ZP_08217969.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064] gi|294327457|gb|EFG09100.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 819 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/320 (37%), Positives = 172/320 (53%), Gaps = 10/320 (3%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVG 91 DV+ A+TG+GKT+ FGL L + D R P + AP AL + PTREL QV Sbjct: 11 DVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRARPDQLSEAPQALVVVPTRELCTQVT 70 Query: 92 RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151 +L V V GG + + L+ G ++VGTPGRL D K L++S ++A Sbjct: 71 NDLLTAGKVRNVRVLAIYGGRAYEPQVEALRKGVDVIVGTPGRLLDLAGQKKLDLSQVRA 130 Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 +VLDEADEMLDLGF D+E I+ P KR+ ++FSAT+ A+ LA+ Y + + Sbjct: 131 LVLDEADEMLDLGFLPDVEKIIQLLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATA 190 Query: 212 ---ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268 E ++I R D+ + IL+ G A++FC T+ + + LA Sbjct: 191 PDDEGATVANITQRVYRAHSMDKPEMVSRILQAEGRGLAMIFCRTKRTAADIADQLARRG 250 Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328 F A+ G+L Q R AL+ R+G+ V + TDVAARGID+ + VI+ + + + Sbjct: 251 FASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTY 310 Query: 329 LHRSGRTGRAGRKGMSVFVI 348 LHR GRTGRAG G +V ++ Sbjct: 311 LHRVGRTGRAGASGTAVTLV 330 >gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21] gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21] Length = 449 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/356 (34%), Positives = 185/356 (51%), Gaps = 21/356 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ GY T +Q + L +D++ SAQTG+GKT +F L LL Sbjct: 7 NLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALERLLTP 66 Query: 66 NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SP P L + PTRELA+QV + V +GG+ + L Sbjct: 67 ----SPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLAQ 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 I+V TPGRL DH+ + +N S L+ +VLDEAD MLD+GF DD++ I D++P +R+ L Sbjct: 123 PVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSDDVDRIADAAPAERQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRV--------NIASENRQHSDIDYRAVLVALSDRDNAI 235 +F+AT+ A+ LA+ KD VRV N+ E R H D R ++ + Sbjct: 183 LFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMR-------HKNRLL 235 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +++ AI+F +T+ + L AL G++SQ R+ + MR G+ Sbjct: 236 QHLVSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKV 295 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 R+ +ATDVAARG+D+ + VI+ +L E+ +HR GRTGRAG G+++ N Sbjct: 296 RLLVATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMN 351 >gi|224128550|ref|XP_002329031.1| predicted protein [Populus trichocarpa] gi|118482674|gb|ABK93256.1| unknown [Populus trichocarpa] gi|222839702|gb|EEE78025.1| predicted protein [Populus trichocarpa] Length = 413 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 189/357 (52%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRQDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + + R + + NV V E PS Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLFDIQKFYNVVV--EELPS 407 >gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23] Length = 543 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I +A Y T +Q + P L D++ AQTGSGKT AF + + + L + Sbjct: 131 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 189 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 190 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184 I++ TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P ++R + Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 363 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F T+A+ R + + F AL G+L+Q +R AL + + G+ + +ATDVA Sbjct: 364 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 423 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++V++ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 424 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 469 >gi|261416325|ref|YP_003250008.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372781|gb|ACX75526.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 802 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/345 (33%), Positives = 189/345 (54%), Gaps = 9/345 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ EA+ GY + +Q + L+ ++L +AQTG+GKT AF L L S + Sbjct: 133 PEVL-EAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLSRI----- 186 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126 F+ + L + PTRELA+QV ++ K V V GG + + R L+ A Sbjct: 187 NFNGRETSM-LVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRKAS 245 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL DHI+ +++ +KA+VLDEADEMLD+GF +D+E IL P + +FS Sbjct: 246 IVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRALFS 305 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ ++ + + + I + +I R +LV + A+ +L Sbjct: 306 ATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEFDG 365 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++F T+ + + + L F V L+G+L+Q R + ++ G+ + +ATDVAAR Sbjct: 366 VLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAAR 425 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 GID+ + LV++ ++ + E+ +HR GRTGRAGR G ++ F+ P+ Sbjct: 426 GIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPR 470 >gi|104783494|ref|YP_609992.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48] gi|95112481|emb|CAK17208.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48] Length = 488 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 186/341 (54%), Gaps = 8/341 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67 + A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ S L + Sbjct: 110 VMHAIHDLGFPYCTPIQAQVLGHTLRGQDAIGRAQTGTGKTAAFLISIISQLQQVPPPKE 169 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAH 126 R+ P AL IAPTREL VQ+ ++ L +G+ V +GG+ ++ + L+ Sbjct: 170 RY--MGEPRALIIAPTRELVVQIAKDAMALTKYSGLNVMSFVGGMDFDKQLKSLEARHCD 227 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184 I+V TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K R+ L+ Sbjct: 228 ILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLL 287 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT + + LAK + + V I EN ++ VA SD+ + N++ + Sbjct: 288 FSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKW 347 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VF + + V R + L LSG++ Q +R L+ R+GR V +ATDVA Sbjct: 348 ERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGRISVLVATDVA 407 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGI + + VI+ L +P++ +HR GRTGRAG G+S+ Sbjct: 408 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSI 448 >gi|24645031|ref|NP_649788.2| eIF4AIII [Drosophila melanogaster] gi|7299019|gb|AAF54221.1| eIF4AIII [Drosophila melanogaster] Length = 399 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 7/341 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +++ +L Sbjct: 32 NLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 88 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L ++PTRELAVQ+ + + L V VCIGG ++ + R L G Sbjct: 89 ---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIV GTPGR+ D I+ + L +K +VLDEADEML+ GF++ I + P ++++ Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ I + + D +R+ + + I V V + + + + ++ Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC+T+ V T+ + E F V ++ G++ Q+ER ++ R G++RV I TDV Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ + LVI+ +L +N E +HR GR+GR GRKG+++ Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366 >gi|37681367|ref|NP_935976.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016] gi|39931700|sp|Q7MGP7|RHLB_VIBVY RecName: Full=ATP-dependent RNA helicase rhlB gi|37200119|dbj|BAC95947.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016] Length = 435 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 186/341 (54%), Gaps = 4/341 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66 PQV+ E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL + Sbjct: 18 PQVV-EGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTHA 76 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ LQ G Sbjct: 77 HEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLQGGVD 136 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLM 184 +++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ +P++R ++ Sbjct: 137 VLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQERLNML 196 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + LA + + V + E + I + D+ + ++ Sbjct: 197 FSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEWP 256 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 AI+F +T+ LA +V L+G++ Q++R L+ G + +ATDVA Sbjct: 257 DRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLVATDVA 316 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 317 ARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA] gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA] Length = 509 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 183/341 (53%), Gaps = 3/341 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY N T VQ + L +D++ +A TG+GKT AF L + STL R Sbjct: 16 AVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILSTL-PRGKRGK--R 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AP L ++PTRELA Q+ + + KTG V GG + +++ G +++ TPG Sbjct: 73 APRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRRGTDVLIATPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + +++ +K++VLDEAD MLD+GF + I+D++P R+ L+FSATI +I Sbjct: 133 RLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTLLFSATIDHSI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + D V IA ++ + +A + + +L G+ IVF T Sbjct: 193 QKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGSDRVIVFART 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L + ++ ++ + SQ +R AL R GR + +ATDV ARGID+PD+ Sbjct: 253 KNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDV 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ +L PE+ +HR GRTGRAG +G +V + + +R Sbjct: 313 DHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRR 353 >gi|261210411|ref|ZP_05924705.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341] gi|260840469|gb|EEX67035.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341] Length = 436 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQVI + L ++G+V T +Q L L +D+ AQTG+GKT+AF A + LL Sbjct: 18 PQVI-DGLEKKGFVYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73 Query: 68 RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 +PA + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ L Sbjct: 74 --TPAAEGRTDTQPRAIIMAPTRELAIQIYNDAEPLLASTGLKAALAYGGESYDKQLAKL 131 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179 Q+G I++GT GR+ D + + ++++++AVVLDEAD M DLGF DI F+ PK Sbjct: 132 QSGVDILIGTTGRIIDFYKQRVFSLNYIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT+S + LA + + V + E + I + + + ++ Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLI 251 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 AI+F +T+ + LA +V L+G++ Q++R L+ G + + Sbjct: 252 EEEWPDRAIIFANTKHRCEQLWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILV 311 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|261212516|ref|ZP_05926801.1| ATP-dependent RNA helicase [Vibrio sp. RC341] gi|260838447|gb|EEX65103.1| ATP-dependent RNA helicase [Vibrio sp. RC341] Length = 422 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 192/379 (50%), Gaps = 10/379 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 LS+ G VN T +Q+ + L+ +DVL AQTG+GKT AFGL L + + + S Sbjct: 20 TLSDLGIVNPTLIQQQAIPHVLQGRDVLAGAQTGTGKTAAFGLPLIQRFIDQPWQREENS 79 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA QV L+ T + + GG S+ + L+ G I++ TP Sbjct: 80 KEIRALVLVPTRELAQQVLDSLQAYAKGTDLKIVAVYGGTSMKVQLNHLRGGVDILIATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A +D V + N + V + + ++ + +VF Sbjct: 200 IKAVAYRIMRDPTEVQVTPSNSTAETVQQMVYPVDKKRKRELLAYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368 LE V++ ++ E+ +HR GRTGRAG G++V ++ + + E + R N + Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDETPQLEAIERLLNTRLPQEWL 379 Query: 369 --WEPAPSVEAIRERDAQR 385 +EP+P V RE ++ R Sbjct: 380 KGFEPSPEV---REENSPR 395 >gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7] Length = 426 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 192/360 (53%), Gaps = 11/360 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L + + T VQE + L KD++ AQTG+GKT A+ L + + L + P Sbjct: 14 DGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL---SKGCHPT 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAHIV 128 A A+ +APTRELA Q+ ++++ V AV + G++ +++R L+ GA IV Sbjct: 71 DAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIV 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL HI+ +++S + VLDEAD MLD+GF DDI + P + +MFSAT Sbjct: 131 IATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSAT 190 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P I TLAK KD V IA +R I A + + + ++ + I Sbjct: 191 MPPKIRTLAKTILKDPEEVKIAI-SRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F S++ V L F V A+ +L Q +R ++ + G + +ATDV ARGI Sbjct: 250 IFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGI 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL--FREANV 365 D+ D++LV++ ++ +PE+ +HR GRT R +G+++ + + Q + +R+ F E V Sbjct: 310 DINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEV 369 >gi|224286258|gb|ACN40838.1| unknown [Picea sitchensis] Length = 411 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/350 (33%), Positives = 187/350 (53%), Gaps = 7/350 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + + P AL Sbjct: 57 GFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATF----CSGILQQLNYNVPECQ--AL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V V C+GG S+ + R LQ G H+VVGTPGR+ D Sbjct: 111 VLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L +K VLDEADEML GF+D I I P ++ +FSAT+ P + + Sbjct: 171 LRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVGVFSATMPPEALEITR 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + + VR+ + + I V V D + + + ++ +++F +TR V Sbjct: 231 KFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 291 DWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + R NV + Sbjct: 351 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQRFYNVVI 400 >gi|332995376|gb|AEF05431.1| ATP-dependent RNA helicase DbpA [Alteromonas sp. SN2] Length = 460 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 177/341 (51%), Gaps = 11/341 (3%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL +G L+ +Q L L DV+ AQTGSGKT+ F ++ ++ Sbjct: 15 ITKALDAQGIFTLSPIQAQSLPHALAGSDVIGQAQTGSGKTLCF-------VIPALEKID 67 Query: 71 PA-SAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHI 127 P A L + PTRELA QV + + G V+ +C GG + + + L++GAH+ Sbjct: 68 PTLFATQVLVLCPTRELADQVAVQYRNAAKQIGNIKVMTIC-GGQPMGPQIQSLKHGAHV 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGR+ +H+ + L + ++ VLDEAD MLD+GF DD++ I K + L+FSA Sbjct: 127 VVGTPGRVMEHVEKRRLMLKDVRLRVLDEADRMLDMGFEDDLKVIFSPMKKGVQTLLFSA 186 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T + I +A Y + V + S+ I V R + IL K A Sbjct: 187 TYTEEIERIADQYLTEPVICKVESDESNKPSITQIGYNVLPHTRIQTLKAILTDSQPKTA 246 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVFC+ R V+ L E F L GE+ Q ER+ L +V +ATDVAARG Sbjct: 247 IVFCNRRVQVTEVVASLLEDGFSAAGLQGEMEQYERTAVLNQFASDALQVLVATDVAARG 306 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+ D+ VI+ +S PE +HR GRT RAG +G ++ ++ Sbjct: 307 LDIDDIPCVINYTVSEEPETHIHRIGRTARAGAEGTAITLV 347 >gi|156105935|gb|ABU49329.1| vasa [Ilyanassa obsoleta] Length = 411 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 111/312 (35%), Positives = 175/312 (56%), Gaps = 7/312 (2%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---PLALAIAPTRELAVQVGREL 94 +D++ AQTGSGKT AF L + + ++ E SP S P A+ +APTRELA Q+ +E Sbjct: 3 RDLMGCAQTGSGKTAAFLLPVLTEMMKEGLTCSPMSVVKEPQAIVVAPTRELADQIYKEA 62 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 T + V GGV+V+ + R + GA++VVGTPGRL D I + + +K ++L Sbjct: 63 RKFSTGTDLRPVVVYGGVAVNHQLRQVDLGANLVVGTPGRLLDFIERGKIGLGKVKYLIL 122 Query: 155 DEADEMLDLGFRDDIEFILDS---SPK-KRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210 DEAD MLD+GF I ++D PK +R+ L+FSAT P I LA ++ KD + + + Sbjct: 123 DEADRMLDMGFEPSIRKLVDGLGMPPKSQRQTLLFSATFKPDIQQLAADFMKDYLFITVG 182 Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270 +D++ + V + + +IL G +VF + + L++ + Sbjct: 183 IVGGACTDVEQTFLEVDRVQKREYLCDILNTSGTNRVLVFVGQKRNADFLASYLSQSGYP 242 Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330 + G+ Q+ER AL+ + G++ V IAT+VAARG+D+PD+ V++ +L + + +H Sbjct: 243 TTTIHGDRLQREREEALRDFKSGKSPVLIATNVAARGLDIPDVTHVVNYDLPMDIDEYVH 302 Query: 331 RSGRTGRAGRKG 342 R GRTGR G G Sbjct: 303 RIGRTGRCGNLG 314 >gi|86144589|ref|ZP_01062921.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp. MED222] gi|85837488|gb|EAQ55600.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp. MED222] Length = 443 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 186/337 (55%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + T +Q + + KD+L S++TGSGKT+AF L + L + FS A Sbjct: 16 LKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHKAL-KTKAFS-AKD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P + +APTRELA QV EL + + +GG + + + + L+ +V TPGR Sbjct: 74 PRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKALRKYPRFIVATPGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192 L DH+ + L + ++ ++LDEAD MLDLGF ++ I +++ +RR LMFSAT+ A Sbjct: 134 LADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251 + +A R+++ N QH DI + L D AI++ ++ + ++F Sbjct: 194 VNDIANEMLDSPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVIEEAEYRQVMIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TRA R T+ L E + VALSG L+Q +R+ + ++ + TDVA+RGID+P Sbjct: 254 ATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDVASRGIDIP 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ VI+ ++ + E +HR GRTGRAG KG ++ ++ Sbjct: 314 NVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350 >gi|302327262|gb|ADL26463.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp. succinogenes S85] Length = 739 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/345 (33%), Positives = 189/345 (54%), Gaps = 9/345 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ EA+ GY + +Q + L+ ++L +AQTG+GKT AF L L S + Sbjct: 70 PEVL-EAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLSRI----- 123 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126 F+ + L + PTRELA+QV ++ K V V GG + + R L+ A Sbjct: 124 NFNGRETSM-LVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRKAS 182 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IVV TPGRL DHI+ +++ +KA+VLDEADEMLD+GF +D+E IL P + +FS Sbjct: 183 IVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRALFS 242 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT+ ++ + + + I + +I R +LV + A+ +L Sbjct: 243 ATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEFDG 302 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 ++F T+ + + + L F V L+G+L+Q R + ++ G+ + +ATDVAAR Sbjct: 303 VLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAAR 362 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350 GID+ + LV++ ++ + E+ +HR GRTGRAGR G ++ F+ P+ Sbjct: 363 GIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPR 407 >gi|218675982|ref|YP_002394801.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus LGP32] gi|218324250|emb|CAV25533.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus LGP32] Length = 447 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 186/337 (55%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + T +Q + + KD+L S++TGSGKT+AF L + L + FS A Sbjct: 20 LKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHKAL-KTKAFS-AKD 77 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P + +APTRELA QV EL + + +GG + + + + L+ +V TPGR Sbjct: 78 PRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKALRKYPRFIVATPGR 137 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192 L DH+ + L + ++ ++LDEAD MLDLGF ++ I +++ +RR LMFSAT+ A Sbjct: 138 LADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAE 197 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251 + +A R+++ N QH DI + L D AI++ ++ + ++F Sbjct: 198 VNDIANEMLDSPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVIEEAEYRQVMIFT 257 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TRA R T+ L E + VALSG L+Q +R+ + ++ + TDVA+RGID+P Sbjct: 258 ATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDVASRGIDIP 317 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ VI+ ++ + E +HR GRTGRAG KG ++ ++ Sbjct: 318 NVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 354 >gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae] gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae] Length = 614 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/358 (32%), Positives = 191/358 (53%), Gaps = 18/358 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ ++I + Y+ T VQ+ + +D++ AQTGSGKT AF + + S + Sbjct: 144 DLGEIISNNIKLSNYMKPTPVQKYAIPIARANRDLMACAQTGSGKTAAFLIPILSLIYEN 203 Query: 66 NDRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113 + P PLAL +APTRELA Q+ E + ++ V V GG Sbjct: 204 GPQGLPQHGRQYGGSGSRKRYPLALVLAPTRELASQIYDESKKFAYRSHVRPCVVYGGAD 263 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + + RDL+ G H++VGTPGRL D + + + ++K ++LDEAD MLD+GF I I+ Sbjct: 264 IGGQMRDLERGCHLLVGTPGRLVDMMERGRIGLDYIKYLILDEADRMLDMGFEPQIRRIV 323 Query: 174 --DSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229 D+ P KRR +MFSAT I LA+++ + + + + +I + V V Sbjct: 324 EQDTMPGTGKRRTMMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSDNITQKVVWVDEQ 383 Query: 230 DRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 D+ + ++++L G +++ + F T+ L + V ++ G+ SQ+ER +AL Sbjct: 384 DKRSFLLDLLNATGKEDSLTLTFVETKKGADSLEAFLYSEGYPVSSIHGDRSQREREDAL 443 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R G + +AT VAARG+D+P+++ VI+ +L S+ + +HR GRTGR G G++ Sbjct: 444 MTFRTGVTPILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNLGLAT 501 >gi|125577677|gb|EAZ18899.1| hypothetical protein OsJ_34439 [Oryza sativa Japonica Group] Length = 541 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/390 (31%), Positives = 206/390 (52%), Gaps = 37/390 (9%) Query: 11 IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +G+AL++ YV T VQ + L +D++ AQTGSGKT AF + S ++ Sbjct: 80 LGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIM--- 136 Query: 67 DRFSPA----------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 R PA + PLAL ++PTREL++Q+ E +TGV V V GG +++ Sbjct: 137 -RGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQ 195 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-- 174 + RDL+ G I+V TPGRL D + +++ ++ + LDEAD MLD+GF + I++ Sbjct: 196 QLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQM 255 Query: 175 --SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 P R+ ++FSAT I +A ++ ++ + + + I R V +D+ Sbjct: 256 DMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKR 315 Query: 233 NAIVNILRYHGAKNA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283 + ++++L H +++ +VF T+ L + F ++ G+ +QQER Sbjct: 316 SHLMDLL--HAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQER 373 Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343 AL+ + G + +ATDVAARG+D+P + V++ +L ++ ++ +HR GRTGRAG+ G+ Sbjct: 374 EYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 433 Query: 344 SVFVIPQN---MQRRAERLFREANVSV-VW 369 + +N M R L +E+N V W Sbjct: 434 ATAFFNENNSSMARSLAELMQESNQEVPAW 463 >gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13] gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_19] gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 20_3] gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13] gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 3_1_19] gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp. 20_3] Length = 426 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 192/360 (53%), Gaps = 11/360 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L + + T VQE + L KD++ AQTG+GKT A+ L + + L + P Sbjct: 14 DGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL---SKGCHPT 70 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAHIV 128 A A+ +APTRELA Q+ ++++ V AV + G++ +++R L+ GA IV Sbjct: 71 DAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIV 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL HI+ +++S + VLDEAD MLD+GF DDI + P + +MFSAT Sbjct: 131 IATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSAT 190 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + P I TLAK KD V IA +R I A + + + ++ + I Sbjct: 191 MPPKIRTLAKTILKDPEEVKIAI-SRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F S++ V L F V A+ +L Q +R ++ + G + +ATDV ARGI Sbjct: 250 IFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGI 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL--FREANV 365 D+ D++LV++ ++ +PE+ +HR GRT R +G+++ + + Q + +R+ F E V Sbjct: 310 DINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEV 369 >gi|145294934|ref|YP_001137755.1| hypothetical protein cgR_0880 [Corynebacterium glutamicum R] gi|140844854|dbj|BAF53853.1| hypothetical protein [Corynebacterium glutamicum R] Length = 424 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 180/341 (52%), Gaps = 4/341 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL G ++QE L L D + A+TG GKT FG+ L + D Sbjct: 19 ITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDRVFDSADVAE 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL I PTRELAVQVG +L+ + + GG + L+ G +VVG Sbjct: 79 TDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDALKVGVDVVVG 138 Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D H RG L++ + +VLDEADEMLDLGF DIE IL + + + ++FSAT+ Sbjct: 139 TPGRLLDLHKRG-ALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQTMLFSATM 197 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA 247 AI TLA+++ V + + + + + V+ D++ IL+ Sbjct: 198 PGAILTLARSFLNKPVHIRAETSDASATHKTTKQVVFQAHKMDKEAITAKILQAKDRGKT 257 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 I+F T+ + ++ + LA F V ++ G++ Q R +L R G+ + +ATDVAARG Sbjct: 258 IIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDILVATDVAARG 317 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ID+ D+ VI+ + +P +HR GRTGRAG G +V ++ Sbjct: 318 IDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLV 358 >gi|66825831|ref|XP_646270.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium discoideum AX4] gi|74897412|sp|Q55D61|IF4A_DICDI RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase eIF4A; AltName: Full=ATP-dependent RNA helicase tifA gi|60474009|gb|EAL71946.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium discoideum AX4] Length = 405 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +D + AQ+G+GKT F + A + N R +P L Sbjct: 51 GFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIG-ALQCVEVNVR-----SPQVL 104 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L + V C+GG ++ + + L+ G HIV GTPGR+ D Sbjct: 105 ILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDM 164 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I K L H+K ++LDEADEML LGF+ I + P ++++ SAT++ + ++ + Sbjct: 165 ITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGTQIVLVSATLTQDVVSMTE 224 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V D + + +I A++FC+T+ V Sbjct: 225 KFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDIYDSLTITQAVIFCNTKKKV 284 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + T+ + + F V ++ G++ Q+ER ++ R G RV I TD+ ARGID+ + LVI Sbjct: 285 DQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVI 344 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L + EN +HR GR+GR GRKG+++ Sbjct: 345 NYDLPIDRENYIHRIGRSGRFGRKGVAI 372 >gi|222110403|ref|YP_002552667.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus TPSY] gi|221729847|gb|ACM32667.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY] Length = 578 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 183/338 (54%), Gaps = 4/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70 A+ E+GY N T +Q + L D+L AQTG+GKT AF L + L A +F Sbjct: 15 AVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRLAEGQAPRSQFG 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA QV + + V GGV ++ + ++ G ++V Sbjct: 75 -GKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQIERIKRGVDVLVA 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + +++S ++ +VLDEAD MLD+GF D++ +L P+ ++ L+FSAT S Sbjct: 134 TPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLPQSKQSLLFSATFS 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + K+ + + N I V + +++I++ H +VF Sbjct: 194 DDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQEHDWSQVLVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L ++ +AL G SQ R+ AL+ + G+ R +ATD+AARGID+ Sbjct: 254 TRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRALVATDIAARGIDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DL V++ E+ + PE+ +HR GRTGRAGR+G +V ++ Sbjct: 314 DDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLV 351 >gi|301171475|ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens] gi|296235291|ref|XP_002762846.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Callithrix jacchus] gi|297709770|ref|XP_002831597.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Pongo abelii] gi|194388152|dbj|BAG65460.1| unnamed protein product [Homo sapiens] Length = 646 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 184 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 242 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 243 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 302 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 303 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 362 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 363 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 422 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 423 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 482 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 483 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 530 Query: 362 EANVSVV 368 E N+++ Sbjct: 531 ERNINIT 537 >gi|121594947|ref|YP_986843.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp. JS42] gi|120607027|gb|ABM42767.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42] Length = 577 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 183/338 (54%), Gaps = 4/338 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70 A+ E+GY N T +Q + L D+L AQTG+GKT AF L + L A +F Sbjct: 15 AVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRLAEGQAPRSQFG 74 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 AL + PTRELA QV + + V GGV ++ + ++ G ++V Sbjct: 75 -GKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQIERIKRGVDVLVA 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + +++S ++ +VLDEAD MLD+GF D++ +L P+ ++ L+FSAT S Sbjct: 134 TPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLPQSKQSLLFSATFS 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + K+ + + N I V + +++I++ H +VF Sbjct: 194 DDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQEHDWSQVLVF 253 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L ++ +AL G SQ R+ AL+ + G+ R +ATD+AARGID+ Sbjct: 254 TRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRALVATDIAARGIDI 313 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DL V++ E+ + PE+ +HR GRTGRAGR+G +V ++ Sbjct: 314 DDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLV 351 >gi|19528517|gb|AAL90373.1| RE50350p [Drosophila melanogaster] Length = 399 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 7/341 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +++ +L Sbjct: 32 NLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 88 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L ++PTRELAVQ+ + + L V VCIGG ++ + R L G Sbjct: 89 ---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIV GTPGR+ D I+ + L +K +VLDEADEML+ GF++ I + P ++++ Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ I + + D +R+ + + I V V + + + + ++ Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC+T+ V T+ + E F V ++ G++ Q+ER ++ R G++RV I TDV Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ + LVI+ +L +N E +HR GR+GR GRKG+++ Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366 >gi|74006722|ref|XP_861268.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) isoform 3 [Canis familiaris] gi|74006724|ref|XP_861300.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) isoform 4 [Canis familiaris] gi|74006730|ref|XP_861379.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) isoform 6 [Canis familiaris] gi|74006732|ref|XP_538003.2| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform) isoform 1 [Canis familiaris] Length = 662 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|87196351|ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens] gi|3023628|sp|O00571|DDX3X_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3X; AltName: Full=DEAD box protein 3, X-chromosomal; AltName: Full=DEAD box, X isoform; AltName: Full=Helicase-like protein 2; Short=HLP2 gi|2148924|gb|AAB95637.1| helicase like protein 2 [Homo sapiens] gi|3523150|gb|AAC34298.1| DEAD box RNA helicase DDX3 [Homo sapiens] gi|15080078|gb|AAH11819.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens] gi|57209229|emb|CAI41416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens] gi|119579806|gb|EAW59402.1| hCG19318, isoform CRA_a [Homo sapiens] gi|119579807|gb|EAW59403.1| hCG19318, isoform CRA_a [Homo sapiens] gi|119579808|gb|EAW59404.1| hCG19318, isoform CRA_a [Homo sapiens] gi|119579809|gb|EAW59405.1| hCG19318, isoform CRA_a [Homo sapiens] gi|158255742|dbj|BAF83842.1| unnamed protein product [Homo sapiens] gi|168277370|dbj|BAG10663.1| ATP-dependent RNA helicase DDX3X [synthetic construct] Length = 662 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|89075608|ref|ZP_01162009.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] gi|89048615|gb|EAR54188.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] Length = 446 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/330 (35%), Positives = 185/330 (56%), Gaps = 9/330 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--APLALAIA 81 T +Q+ + + KD+L S++TGSGKT+AF L + R P + P L + Sbjct: 25 TEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQRMY----RSKPFTRRDPRVLILT 80 Query: 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141 PTRELA QV +L L A T + +GG + + + + L+N VV TPGRL DH+ Sbjct: 81 PTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKALRNDPMFVVATPGRLADHLEH 140 Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKN 199 + ++ L+ ++LDEAD +LDLGF + I +++ +RR LMFSAT+ + + +A Sbjct: 141 RSTHLDGLEMLILDEADRILDLGFEAQLRRINEAANHRRRQTLMFSATLDHSDVVEIASE 200 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258 + R++I +H DI R +L D A+++ IL K I+F +TRA Sbjct: 201 MLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKILETQDYKQVIIFTATRADTD 260 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 R T L E + VALSG L+Q +R++ + ++ + TD+A+RG+D+ ++ LVI+ Sbjct: 261 RLTAELNERKLKAVALSGSLNQNQRNSIMSQFERTCHKILVTTDIASRGLDIDNVSLVIN 320 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ + E +HR GRTGRAG KG +V ++ Sbjct: 321 FDMPKHAEEYVHRVGRTGRAGNKGDAVSLV 350 >gi|238784236|ref|ZP_04628248.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970] gi|238714803|gb|EEQ06803.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970] Length = 451 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/370 (33%), Positives = 191/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY+ T +Q + L +D++ SAQTG+GKT F L L L + Sbjct: 15 AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNQNQEPIKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+ ++ + V GGVS++ + L+ G I+V TPG Sbjct: 75 PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V V +A N I V + + + ++ + +VF T Sbjct: 195 KGLASKLLHNPVSVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + A+ G SQ R+ AL +DG+ RV +ATD+AARG+D+ L Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA R G ++ ++ + R ERL + + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|62087546|dbj|BAD92220.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo sapiens] Length = 674 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 212 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 270 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 271 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 330 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 331 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 390 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 391 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 450 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 451 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 510 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 511 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 558 Query: 362 EANVSVV 368 E N+++ Sbjct: 559 ERNINIT 565 >gi|323496504|ref|ZP_08101562.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sinaloensis DSM 21326] gi|323318781|gb|EGA71734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sinaloensis DSM 21326] Length = 444 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/328 (35%), Positives = 185/328 (56%), Gaps = 5/328 (1%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q+ + + KD+L S++TGSGKT+AF L + L ++ FS A P A+ +APT Sbjct: 25 TEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPILHKSL-KSKAFS-AKDPRAVILAPT 82 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA QV EL + A + +GG + + + + L+ +V TPGRL DH+ + Sbjct: 83 RELAKQVYGELRTMLAGLSYDATLIVGGENFNDQVKALRKYPKFIVATPGRLADHLEHRS 142 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKNYQ 201 L + L+ +VLDEAD MLDLGF ++ I +++ +RR LMFSAT+ A + +A Sbjct: 143 LFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAEVNDIAFEML 202 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260 R+ + N +H DI + L D AI+ ++ K I+F +TRA R Sbjct: 203 NAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVIEEANYKQLIIFTATRADTDRL 262 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T+ L E + +ALSG L+Q +R+ + ++ + TDVA+RG+D+ ++ VI+ + Sbjct: 263 TEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHVINFD 322 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + + E +HR GRTGRAG KG +V ++ Sbjct: 323 MPKHTEEYVHRVGRTGRAGNKGDAVSLV 350 >gi|301171467|ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens] Length = 661 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|299470469|emb|CBN78461.1| DEAD box helicase [Ectocarpus siliculosus] Length = 1012 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/378 (32%), Positives = 197/378 (52%), Gaps = 34/378 (8%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 ++P + EA+ E GY + +Q + + +D++ A+TGSGKT AFG+ + + +L+ Sbjct: 582 HLPSSVMEAIRELGYEKPSPIQRQAIPIGMERRDIIGIAETGSGKTAAFGIPMIAYILSL 641 Query: 65 ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 DR + PLAL +APTRELA+Q+ E + G+ +GG + + L Sbjct: 642 EAGMRDRVAD-QGPLALIMAPTRELAIQIEEECKKFCKFAGLNTVCVVGGQDIEAQAFTL 700 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------ 175 + G I++GTPGRL D + L ++ VVLDEAD M+D+GF D + +L++ Sbjct: 701 RKGVEIIIGTPGRLNDCVEKHYLVLNQCNYVVLDEADRMIDMGFEDQVLAVLEAMGGTLK 760 Query: 176 ---------SPKK-----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENR- 214 KK R MFSAT+ A+ +AK Y + V I E+ Sbjct: 761 ADDAELAYKQEKKAKQARSAADLVRVTAMFSATMPAAVEKMAKKYLRHPAIVQIGDEDTG 820 Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVA 273 ++ I+ R + + + + + +LR H ++ +VF +T+ S + L + F Sbjct: 821 KNRRIEQRVLWMTEAQKKTKVTELLRGHDKEDRVLVFINTKKSADMLGRQLEQAGFPTGV 880 Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333 L G +Q +R L+ RDG V +ATDVA+RG+D+PD++ VI+ EL + E HR G Sbjct: 881 LHGGKTQDQREENLESFRDGDYTVLVATDVASRGLDIPDVK-VINYELPNKIETYCHRIG 939 Query: 334 RTGRAGRKGMSVFVIPQN 351 RTGRAG+ G++ + ++ Sbjct: 940 RTGRAGKDGVATSFLTEH 957 >gi|290987403|ref|XP_002676412.1| predicted protein [Naegleria gruberi] gi|284090014|gb|EFC43668.1| predicted protein [Naegleria gruberi] Length = 407 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/326 (33%), Positives = 177/326 (54%), Gaps = 8/326 (2%) Query: 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 DV+ AQ+G+GKT F ++L L D P L +APTRELA Q+ + + L Sbjct: 71 DVIGQAQSGTGKTATFTISLLQRLNISPDVIQPQ----GLVLAPTRELAQQIHKVIMSLG 126 Query: 99 AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 V V C+GG V + L+ G HI+VGTPGR+ I+ LN++ +K +V+DEAD Sbjct: 127 EYMKVKVHACVGGTKVQHDIAILEEGVHIIVGTPGRVFHMIQSGHLNVNSIKMLVIDEAD 186 Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218 EML GF+D I I + P+ ++ +FSAT+ + + + +D +R+ + E Sbjct: 187 EMLSRGFKDQIYAIFKNLPQDMQVCLFSATMPTEVLEITDKFMRDPIRILVKKEELTLEG 246 Query: 219 IDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 I + V D + + ++ + ++FC++R V + + L + F V + GE Sbjct: 247 IKQFYISVDREDYKFETLCDLYKVLTISQCVIFCNSRKKVEQLAEQLNKKDFTVSCMHGE 306 Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 + ++R + R +RV I TD+ ARGID+ + LVI+ +L + EN LHR GR+GR Sbjct: 307 MDPKDRELIMHEFRTSASRVLITTDLLARGIDVHHVSLVINFDLPRHKENYLHRIGRSGR 366 Query: 338 AGRKGMSV-FVIPQNMQ--RRAERLF 360 GRKG+++ FV +++ R E+ + Sbjct: 367 YGRKGVAINFVTKDDVRSLREIEKFY 392 >gi|110834781|ref|YP_693640.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2] gi|110647892|emb|CAL17368.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2] Length = 422 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/350 (34%), Positives = 191/350 (54%), Gaps = 16/350 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSP 71 +++ G+ T +Q +L L D + AQTG+GKT AF + + + LL + RF Sbjct: 38 IADSGFQYCTPIQAEVLEHTLAGADAIGRAQTGTGKTAAFLITVINDLLKHPIDVQRF-- 95 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVG 130 A P AL +APTRELA+Q+ ++ L T + V +GG++ +R++ LQN I+V Sbjct: 96 AGEPRALIVAPTRELAMQIEKDANILTKYTDLQVMSVVGGMNFNRQQERLQNKLIDILVA 155 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188 TPGRL D + + L + ++ +VLDEAD MLD+GF D++ I+ +PK R+ +FSAT Sbjct: 156 TPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKSQYRQTQLFSAT 215 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + + L++ + +DA V I ++ + + D+ + N++ I Sbjct: 216 FNDDVMNLSRRWTQDAEIVEIEPTQVTTDTVEQKVYITNTDDKFKLLYNLITGMNMDKVI 275 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF + R R L + +V +SG++ Q +RS L+ R G +V IATDVA RGI Sbjct: 276 VFANRRDITRRVCDRLQKRGLKVSLISGDVPQTQRSKTLERFRAGDLQVLIATDVAGRGI 335 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350 + + V++ L +PE+ +HR GRTGRAG GMS+ F++P+ Sbjct: 336 HIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAFLLPE 385 >gi|74006742|ref|XP_861537.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 isoform 11 [Canis familiaris] Length = 646 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 184 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 242 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 243 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 302 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 303 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 362 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 363 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 422 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 423 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 482 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 483 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 530 Query: 362 EANVSVV 368 E N+++ Sbjct: 531 ERNINIT 537 >gi|76253275|emb|CAH61467.1| Pl10-related protein [Rana lessonae] Length = 687 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/380 (31%), Positives = 199/380 (52%), Gaps = 29/380 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ ++I + Y T VQ+ + + ++D++ AQTGSGKT AF L + S + A+ Sbjct: 229 NMGEIIMGNIQLTRYTRPTPVQKHAIPIIIDKRDLMACAQTGSGKTAAFLLPILSQIYAD 288 Query: 66 -----------NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113 N R+ PL+L +APTRELAVQ+ E ++ V V GG Sbjct: 289 GPGDAMKHLKDNGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGAD 348 Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + ++ RDL+ G H++V TPGRL D + + + + K +VLDEAD MLD+GF I I+ Sbjct: 349 IGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIV 408 Query: 174 --DSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229 D+ P K R+ +MFSAT I LA+++ ++ + + + +I + V V Sbjct: 409 EQDTMPPKGVRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEEM 468 Query: 230 DRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 D+ + ++++L G + +VF T+ L + ++ G+ SQ++R AL Sbjct: 469 DKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALH 528 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 R G++ + +AT VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ Sbjct: 529 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL----- 583 Query: 349 PQNMQRRAERLFREANVSVV 368 A F E N+++ Sbjct: 584 -------ATSFFNEKNINIT 596 >gi|238798926|ref|ZP_04642391.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969] gi|238717236|gb|EEQ09087.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969] Length = 451 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/370 (33%), Positives = 191/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E+GY+ T +Q + L +D++ SAQTG+GKT F L L L + Sbjct: 15 AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNQNQEPIKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+ ++ + V GGVS++ + L+ G I+V TPG Sbjct: 75 PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V V +A N I V + + + ++ + +VF T Sbjct: 195 KGLASKLLHNPVSVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + A+ G SQ R+ AL +DG+ RV +ATD+AARG+D+ L Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA R G ++ ++ + R ERL + + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALE 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|111024197|ref|YP_707169.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1] gi|110823727|gb|ABG99011.1| possible ATP-dependent RNA helicase [Rhodococcus jostii RHA1] Length = 632 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 202/393 (51%), Gaps = 24/393 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLA 64 +P + +AL+ R + + S +A+ PD L +VL AQTGSGKT+AFGL + + L Sbjct: 32 GLPAPLVQALA-RNSITVPSPIQALAVPDALAGTNVLGRAQTGSGKTLAFGLPMLTRLSR 90 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 DR +P P AL + PTRELA QV L G+ V +GG ++ L+ G Sbjct: 91 HEDRPAPKR-PRALVLVPTRELAFQVVDSLNSYAGAMGLTVRPAVGGTPFSKQVDQLRRG 149 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 I+V TPGRL DH+R + ++ LDEAD+M D+GF ++ IL + + L+ Sbjct: 150 VDILVATPGRLNDHLRQGTCILDSIEITALDEADQMADMGFLPEVRAILGETRADGQRLL 209 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ + +L + + D V+ + +++ +LV +DN + I GA Sbjct: 210 FSATLDREVQSLVRQFLPDHVQHSTEDGRASVDTMEHYVLLVDRGQKDNVLAEI----GA 265 Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++ I+F T+ T L AL G +Q +R+ L+ ++GR V +ATD Sbjct: 266 RDGRTIMFARTKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLERFKNGRTPVLVATD 325 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARGI + ++LV+H + ++ ++ LHR+GRT RAG KG V ++ N +R RL Sbjct: 326 VAARGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRTFRRLTGM 385 Query: 363 ANV---------------SVVWEPAPSVEAIRE 380 A V S+ APS E +R+ Sbjct: 386 AGVDATAVPVTPGSEKLASITGAKAPSGEPVRD 418 >gi|296235289|ref|XP_002762845.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 1 [Callithrix jacchus] gi|297709768|ref|XP_002831596.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Pongo abelii] Length = 660 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|296190482|ref|XP_002743273.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Callithrix jacchus] Length = 437 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVTAQSQSGTGKTATFNISVLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHTCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IRG+ L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRGRSLRTCAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + I V V + + + + ++ ++FC+T+ V Sbjct: 231 KFMTDPVRILVKRDKLTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQVVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+E + ++ R G ++V I+TDV ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSIHGDMPQKEWESIMKEFRAGTSQVLISTDVWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 +L++N E +HR GR+GR GRKG+++ Sbjct: 351 TYDLTNNRELYIHRIGRSGRYGRKGVAI 378 >gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta DSM 2243] gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243] Length = 508 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 183/341 (53%), Gaps = 3/341 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY N T VQ + L +D++ +A TG+GKT AF L + STL R Sbjct: 16 AVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILSTL-PRGKRGK--R 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AP L ++PTRELA Q+ + + KTG V GG + +++ G +++ TPG Sbjct: 73 APRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRRGTDVLIATPG 132 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + +++ +K++VLDEAD MLD+GF + I+D++P R+ L+FSATI +I Sbjct: 133 RLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTLLFSATIDHSI 192 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + D V IA ++ + +A + + +L G+ IVF T Sbjct: 193 QKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGSDRVIVFART 252 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L + ++ ++ + SQ +R AL R GR + +ATDV ARGID+PD+ Sbjct: 253 KNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDV 312 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ +L PE+ +HR GRTGRAG +G +V + + +R Sbjct: 313 DHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRR 353 >gi|209809226|ref|YP_002264764.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida LFI1238] gi|208010788|emb|CAQ81183.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida LFI1238] Length = 418 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 172/335 (51%), Gaps = 1/335 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPAS 73 +SE G+ T VQ+ + L+ DVL AQTG+GKT AFGL L L+ + + R + + Sbjct: 16 VSELGFTEATPVQQQAIPLVLKGHDVLAGAQTGTGKTAAFGLPLIQRLIESPSPRIANSK 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV L T + V GG SV + +L GA I+V TPG Sbjct: 76 VIRTLILTPTRELAQQVFDSLVTYTKNTDLKCVVAYGGTSVKIQTENLIGGADILVATPG 135 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH+ + ++ + +VLDEAD MLD+GF DI+ IL K + L FSAT I Sbjct: 136 RLLDHLHLNNITLNQAEYLVLDEADRMLDMGFMPDIQRILRKMASKHQTLFFSATFGDKI 195 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 +A + V + N ++ V + + ++ K +VF T Sbjct: 196 KEIAYRILDNPKVVQVTPSNSTADTVEQMVYPVDKHRKSELLAYLIGSRNWKQVLVFTKT 255 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + K L + +++G+ SQ R AL+ + G+ R IATDVAARG+D+ L Sbjct: 256 KQGSDDLVKELKLDGIKAASINGDKSQGARIRALEEFKTGKIRALIATDVAARGLDIEQL 315 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 E VI+ EL E+ +HR GRTGRAG G +V ++ Sbjct: 316 ECVINYELPFKAEDYVHRIGRTGRAGHTGKAVSLM 350 >gi|197692141|dbj|BAG70034.1| ATP-dependent RNA helicase DDX3X [Homo sapiens] gi|197692387|dbj|BAG70157.1| ATP-dependent RNA helicase DDX3X [Homo sapiens] Length = 662 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|197123442|ref|YP_002135393.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K] gi|196173291|gb|ACG74264.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K] Length = 478 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 201/383 (52%), Gaps = 18/383 (4%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + +AL G+ + T +Q + P L +DV+ +A TG+GKT AF L + L Sbjct: 13 NLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIERLAGG 72 Query: 66 NDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 + PA+A P AL +APTRELAVQ+ ELE V A+ IGGV + + Sbjct: 73 APKDRPAAAHGKPGPRALVLAPTRELAVQIAGELERFGRGRHVRGALVIGGVGMGAQSAA 132 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L++ ++V TPGRL DH++ + L+ +VLDEAD MLD+GF ++ IL PK R Sbjct: 133 LRD-HEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARVPKVR 191 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + L+FSAT++ + A+ + +D VRV +A + R L ++ ++ +L Sbjct: 192 QTLLFSATMAGEVADFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLLALLE 251 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + +VF T+ + K L +V + + SQ +R AL+ RDG+ RV +A Sbjct: 252 ED-DLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVA 310 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ--RRAE 357 TD+AARGID+ ++ V++ +L PE+ +HR GRT R G S F P+ + R E Sbjct: 311 TDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEELDLLRDIE 370 Query: 358 RLFREANVSVVWEPAPSVEAIRE 380 RL R P P E RE Sbjct: 371 RLTR--------APIPRAEVPRE 385 >gi|77918185|ref|YP_356000.1| DNA/RNA helicase [Pelobacter carbinolicus DSM 2380] gi|77544268|gb|ABA87830.1| DNA/RNA helicase, ATP-dependent, DEAD-box family [Pelobacter carbinolicus DSM 2380] Length = 432 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 184/345 (53%), Gaps = 7/345 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F PQV + + GYV T +Q + + +DV+ AQTG+GKT AF L + L+ Sbjct: 6 FNFHPQV-AKGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPILQRLI 64 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 P AL +APTRELA Q+ + + L TG+ GGV++ + L+ Sbjct: 65 D-----GPRGRLRALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGLKR 119 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 G IVV PGRL DHI K +++S+++ +VLDEAD+M D+GF + IL P +R+ L Sbjct: 120 GVDIVVACPGRLIDHIGQKTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQTL 179 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+ AI L+ + V + + + + + VA + ++ +L Sbjct: 180 LFSATMPAAIRRLSGEVLTSPMTVQVGNTTPAET-VSHALYPVAQHQKTAMLLELLSAVD 238 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 +++ +VF T+ R L + +Q +L G LSQ R AL RDG+ + +ATD+ Sbjct: 239 SRSVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEILVATDI 298 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 AARGID+ + VI+ ++ E +HR GRTGRA RKG + ++ Sbjct: 299 AARGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLV 343 >gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum] gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum] Length = 434 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 111/366 (30%), Positives = 195/366 (53%), Gaps = 14/366 (3%) Query: 4 FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 FE++ PQ+I +A G+ +Q + L+ +D++ AQTGSGKT AF + + Sbjct: 12 FESLGVHPQII-DACYRSGFKKPKEIQRETIPWALKGRDIIGLAQTGSGKTGAFVIPVLQ 70 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 LL + L IAPTRELA Q+ + L A GV V +GG+ + Sbjct: 71 KLLEQ------PQGIFCLCIAPTRELAFQIAEQFNALGATIGVKTCVLVGGIDSMTQSLQ 124 Query: 121 LQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L HI++G+PGR+ H+ KG N+ +K ++DEAD + F +++ IL PK+ Sbjct: 125 LAKKPHIIIGSPGRIIFHLENTKGFNLRSIKYFIMDEADRLFGADFEEEVNNILKVIPKE 184 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R +FSAT++ + L + + V++ +A++ + + + + + ++ +V IL Sbjct: 185 RNTFLFSATMTSKVAKLQRASLVNPVKIQVATKYQTVDTLIQQYLFIPFKYKECYLVYIL 244 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 I+F ST AS ++ T +L + ++G++ Q +R +L + G + + Sbjct: 245 NELAGNLTIIFTSTCASSNKVTLMLRNLGLAAIPINGDMDQAKRLASLSKFKQGTKSILV 304 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRA 356 ATDVAARG+D+P ++LVI+ ++ +N + +HR GRT RAG G ++ ++ Q M +R Sbjct: 305 ATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRTARAGNSGRAITLVTQYDVEMYQRI 364 Query: 357 ERLFRE 362 E + ++ Sbjct: 365 EFVLKK 370 >gi|67624743|ref|XP_668654.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium hominis TU502] gi|54659828|gb|EAL38390.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium hominis] Length = 702 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/360 (33%), Positives = 189/360 (52%), Gaps = 16/360 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E I +++ + + Y T VQ+ + L +D++ AQTGSGKT AF + +L Sbjct: 205 LEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIVMKML 264 Query: 64 AENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114 + +P + P+AL ++PTRELA+Q E TG+ V GG V Sbjct: 265 NDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYGGSEV 324 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 + DL G+ I+V TPGRL D I RGK +N+ +K ++LDEAD MLD+GF I I+ Sbjct: 325 RSQIMDLDRGSDIIVATPGRLRDLIDRGK-VNLKLIKFLILDEADRMLDMGFAPQIREIV 383 Query: 174 DSSP-----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 + S R+ +MFSAT I LAK++ + + + + I R V Sbjct: 384 EDSEMPHSLDGRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEE 443 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 + +V +L G +VF + + L + F V++ G+ SQQER +AL+ Sbjct: 444 DHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALR 503 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + R G+ + +ATDVAARG+D+P++ VI+ ++ N ++ +HR GRTGRAG G++ + Sbjct: 504 LFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGLATSFV 563 >gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB] Length = 543 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I +A Y T +Q + P L D++ AQTGSGKT AF + + + L + Sbjct: 131 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 189 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 190 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184 I++ TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P ++R + Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 363 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F T+A+ R + + F AL G+L+Q +R AL + + G+ + +ATDVA Sbjct: 364 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 423 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++V++ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 424 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 469 >gi|110740927|dbj|BAE98559.1| eukaryotic protein synthesis initiation factor 4A [Arabidopsis thaliana] Length = 412 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D FS AL Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTTTF----CSGVLQQLD-FSLIQCQ-AL 111 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ H+VVGTPGR+ D Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQASVHVVVGTPGRVFDM 171 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 ++ + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + + NV V E PS Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 406 >gi|33593906|ref|NP_881550.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis Tohama I] gi|33563980|emb|CAE43244.1| probable ATP-dependent RNA helicase [Bordetella pertussis Tohama I] gi|332383325|gb|AEE68172.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis CS] Length = 462 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 130/389 (33%), Positives = 206/389 (52%), Gaps = 22/389 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +T +Q L L +D++ A+TGSGKT AFGL + L + +R AP AL Sbjct: 23 GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNL--DVNRL----APQAL 76 Query: 79 AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV +EL L V V GG + + L G H+VVGTPGR+ D Sbjct: 77 VLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQD 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+ L++S L +VLDEAD M+D+GF DDI I P +R+ L+FSAT I L+ Sbjct: 137 HLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLS 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + ++ + + +++ S I+ + R +A+ +L + + + FC+T+ Sbjct: 197 ARFLRNPAEIKVEAQH-DASRIEQLFFEIDEGQRLDAVATLLAHFRPASTLAFCNTKIRS 255 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + L AL+G+L Q+ER L + V +ATDVAARG+D+ +L VI Sbjct: 256 HDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP--- 373 + +++ + E +HR GR+GR +KG+++ P+ M R AN+ ++ AP Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEM--------RWANLIEQYQGAPLKW 367 Query: 374 -SVEAIRERDAQRILQDPLFLDSIQGDEK 401 + ++R + + R L+ P+ IQG +K Sbjct: 368 ADLGSLRPK-SDRPLRAPMITLCIQGGKK 395 >gi|194744201|ref|XP_001954583.1| GF18341 [Drosophila ananassae] gi|194903996|ref|XP_001980981.1| GG24917 [Drosophila erecta] gi|195055753|ref|XP_001994777.1| GH14195 [Drosophila grimshawi] gi|195110945|ref|XP_002000040.1| GI24868 [Drosophila mojavensis] gi|195391782|ref|XP_002054539.1| GJ24512 [Drosophila virilis] gi|195499068|ref|XP_002096791.1| GE25867 [Drosophila yakuba] gi|190627620|gb|EDV43144.1| GF18341 [Drosophila ananassae] gi|190652684|gb|EDV49939.1| GG24917 [Drosophila erecta] gi|193892540|gb|EDV91406.1| GH14195 [Drosophila grimshawi] gi|193916634|gb|EDW15501.1| GI24868 [Drosophila mojavensis] gi|194152625|gb|EDW68059.1| GJ24512 [Drosophila virilis] gi|194182892|gb|EDW96503.1| GE25867 [Drosophila yakuba] Length = 399 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 7/341 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +++ +L Sbjct: 32 NLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 88 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L ++PTRELAVQ+ + + L V VCIGG ++ + R L G Sbjct: 89 ---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIV GTPGR+ D I+ + L +K +VLDEADEML+ GF++ I + P ++++ Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ I + + D +R+ + + I V V + + + + ++ Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC+T+ V T+ + E F V ++ G++ Q+ER ++ R G++RV I TDV Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ + LVI+ +L +N E +HR GR+GR GRKG+++ Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366 >gi|115486155|ref|NP_001068221.1| Os11g0599500 [Oryza sativa Japonica Group] gi|122206897|sp|Q2R1M8|RH52C_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52C gi|77551918|gb|ABA94715.1| DEAD-box protein 3, X-chromosomal, putative, expressed [Oryza sativa Japonica Group] gi|113645443|dbj|BAF28584.1| Os11g0599500 [Oryza sativa Japonica Group] Length = 623 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/390 (31%), Positives = 206/390 (52%), Gaps = 37/390 (9%) Query: 11 IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +G+AL++ YV T VQ + L +D++ AQTGSGKT AF + S ++ Sbjct: 162 LGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIM--- 218 Query: 67 DRFSPA----------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 R PA + PLAL ++PTREL++Q+ E +TGV V V GG +++ Sbjct: 219 -RGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQ 277 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-- 174 + RDL+ G I+V TPGRL D + +++ ++ + LDEAD MLD+GF + I++ Sbjct: 278 QLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQM 337 Query: 175 --SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 P R+ ++FSAT I +A ++ ++ + + + I R V +D+ Sbjct: 338 DMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKR 397 Query: 233 NAIVNILRYHGAKNA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283 + ++++L H +++ +VF T+ L + F ++ G+ +QQER Sbjct: 398 SHLMDLL--HAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQER 455 Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343 AL+ + G + +ATDVAARG+D+P + V++ +L ++ ++ +HR GRTGRAG+ G+ Sbjct: 456 EYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 515 Query: 344 SVFVIPQN---MQRRAERLFREANVSV-VW 369 + +N M R L +E+N V W Sbjct: 516 ATAFFNENNSSMARSLAELMQESNQEVPAW 545 >gi|326777924|ref|ZP_08237189.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus XylebKG-1] gi|326658257|gb|EGE43103.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus XylebKG-1] Length = 521 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 131/379 (34%), Positives = 197/379 (51%), Gaps = 13/379 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + AL G +Q A L L +DVL +TGSGKT+AFGLAL L Sbjct: 85 MPAPLKAALVAEGMTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTA 141 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R + A PLAL + PTRELA QV L + +A +GG+S+ R+ L+ GA Sbjct: 142 GRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRIATVVGGMSIGRQAGALRGGAE 201 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185 +VV TPGRL D I + + VLDEAD+M D+GF + +LD +P +RML F Sbjct: 202 VVVATPGRLKDLIERGDCRLDRVTITVLDEADQMADMGFMPQVTELLDQVNPDGQRML-F 260 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + Y KD V ++ + +++ + V +D+ I G Sbjct: 261 SATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG-- 318 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ +V + T L + AL G SQ +R+ L+ + G V +AT+VAA Sbjct: 319 RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLERFKTGHVTVLVATNVAA 378 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + +L+LV++ + S+ ++ LHR GRT RAG G V ++ N +R RL +A + Sbjct: 379 RGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAGI 438 Query: 366 SVVWEPAPSVEAIRERDAQ 384 + P + +R +A+ Sbjct: 439 T------PQIAQVRSGEAE 451 >gi|225450277|ref|XP_002267581.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 663 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 198/360 (55%), Gaps = 23/360 (6%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AENDRFSPASAP 75 YV T VQ + + +D++ AQTGSGKT AF + S ++ A+ R S + P Sbjct: 237 YVKPTPVQRHAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMKGQYAQRPRGSRTAYP 296 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 LAL ++PTREL+ Q+ E + +TGV V V GG ++++ RDL+ G I+V TPGRL Sbjct: 297 LALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRL 356 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK-RRMLMFSATISP 191 D + +++ ++ + LDEAD MLD+GF I I +D P+ R+ ++FSAT Sbjct: 357 VDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQMDMPPRGVRQTMLFSATFPK 416 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVF 250 I LA ++ + + + + +++ +D + + R+N HG + +VF Sbjct: 417 EIQRLASDFLANYIFLAVGRSDKRSHLMD-----LLHAQRENGT------HGKQALTLVF 465 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ L + F ++ G+ SQQER +AL++ + G + +ATDVAARG+D+ Sbjct: 466 VETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKSGATPILVATDVAARGLDI 525 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV 367 P + V++ +L ++ ++ +HR GRTGRAG+ G++ +N + R L +E+N V Sbjct: 526 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLARGLAELMQESNQEV 585 >gi|170091668|ref|XP_001877056.1| predicted protein [Laccaria bicolor S238N-H82] gi|164648549|gb|EDR12792.1| predicted protein [Laccaria bicolor S238N-H82] Length = 396 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 108/325 (33%), Positives = 179/325 (55%), Gaps = 11/325 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 +++Q+ + P + +DV+ AQ+G+GKT F +++ ++ AL ++PT Sbjct: 47 SAIQQRAILPITQGRDVIAQAQSGTGKTATFSISILQSIDV------TVRETQALVLSPT 100 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA Q+ + L V CIGG S+ + R L+ G H+V GTPGR+ D IR + Sbjct: 101 RELATQIQSVVLALGDYMNVQCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRS 160 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L ++K +VLDEADE+L+ GF+D I + P ++++ SAT+ + + + D Sbjct: 161 LRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVILLSATLPYDVLEMTTKFMTD 220 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260 +R+ + + I + VA+ D + + ++ A++FC+TR V Sbjct: 221 PIRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 278 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T+ + F V ++ GE+ Q+ER + R G +RV I TDV ARGID+ + LVI+ + Sbjct: 279 TEKMRASNFTVSSMHGEMVQKERDAIMAEFRGGTSRVLITTDVWARGIDVQQVSLVINYD 338 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345 L +N EN +HR GR+GR GRKG+++ Sbjct: 339 LPANRENYIHRIGRSGRFGRKGVAI 363 >gi|156554534|ref|XP_001605420.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia vitripennis] Length = 775 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/367 (32%), Positives = 198/367 (53%), Gaps = 9/367 (2%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 ++ FE N P + E + ++G++ T++Q L +D++ AQTGSGKT+A+ L Sbjct: 110 IQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP- 168 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117 A+ + R S P+ L +APTRELA Q+ + + + + + CI GG + Sbjct: 169 ATVHINNQPRLSRGDGPIVLVLAPTRELAQQI-QSVARDFGSSSCIRNTCIFGGSPKGPQ 227 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 RDL+ G I + TPGRL D + N+ +VLDEAD MLD+GF I I++ Sbjct: 228 ARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 287 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236 R++LM+SAT + LA+++ D +++NI S N + +I + +++N + Sbjct: 288 PDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLNLAANHNIRQIIEICQEHEKENKLA 347 Query: 237 NILRYHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293 +LR G + I+F T+ V TK + + + +A+ G+ SQ ER L R+G Sbjct: 348 VLLREIGCERGNKTIIFVETKKKVDDITKAIKRNGWPAIAIHGDKSQPERDYVLSEFRNG 407 Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + + +ATDVAARG+D+ D++ V++ + ++ E+ +HR GRTGR G + N Sbjct: 408 KTAILVATDVAARGLDVEDVKYVVNFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNA 467 Query: 354 RRAERLF 360 R+A+ L Sbjct: 468 RQAKELI 474 >gi|300794325|ref|NP_001179891.1| ATP-dependent RNA helicase DDX3X [Bos taurus] gi|297493243|ref|XP_002700250.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos taurus] gi|296470612|gb|DAA12727.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos taurus] Length = 661 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 199 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 257 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 258 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 317 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 318 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 377 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 378 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 437 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 438 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 497 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 545 Query: 362 EANVSVV 368 E N+++ Sbjct: 546 ERNINIT 552 >gi|2580550|gb|AAC51829.1| dead box, X isoform [Homo sapiens] gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens] Length = 662 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|114149265|sp|Q3MSQ8|DDX4_RANLE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName: Full=DEAD box protein 4; AltName: Full=Vasa homolog gi|76253272|emb|CAH56439.1| DEAD box protein [Rana lessonae] Length = 724 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/348 (33%), Positives = 190/348 (54%), Gaps = 8/348 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64 N+ + + + + GYV LT +Q+ + + +D++ AQTGSGKT AF L + + L+ Sbjct: 292 NLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVK 351 Query: 65 --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 E+ F P A+ +APTREL Q+ + T V V GG + + + Sbjct: 352 GVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHSLKQIS 411 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK- 179 G +I+ TPGRL D IR + + ++ L+ +VLDEAD MLD+GFR+DIE +L SS P K Sbjct: 412 EGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKE 471 Query: 180 -RRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ LMFSAT +I +LA+ K D + V + SD++ + V + + ++ Sbjct: 472 ERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVIEVDEFGKKDKLME 531 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 IL+ G++ +VF T+ L + ++ G+ Q+ER AL+ R G+ V Sbjct: 532 ILQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRDFRTGQCPV 591 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +AT VAARG+D+ ++ VI+ ++ + + +HR GRTGR G G ++ Sbjct: 592 IVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAI 639 >gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata] Length = 650 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 190/347 (54%), Gaps = 11/347 (3%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71 +S+ GYV T VQ+ + +D++ AQTGSGKT AF L + L+A+ +FS Sbjct: 230 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASQFSE 289 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P A+ +APTREL Q+ E T V V GGVS + R++ G +++ GT Sbjct: 290 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREICRGCNVLCGT 349 Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186 GRL D I RGK + + L+ +VLDEAD MLD+GF D+ ++ S S +KR+ LMFS Sbjct: 350 LGRLLDVIGRGK-VGLHKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEKRQTLMFS 408 Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT I +A ++ K D + + + SD++ + + V + +++IL+ G + Sbjct: 409 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQKFIEVTKFSKREQLLDILKTTGTE 468 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ L + ++ G+ Q+ER AL R GR V +AT VAA Sbjct: 469 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGRCPVLVATSVAA 528 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 RG+D+PD++ V++ +L +N + +HR GRTGR G G +V F P N Sbjct: 529 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDPDN 575 >gi|242053633|ref|XP_002455962.1| hypothetical protein SORBIDRAFT_03g028090 [Sorghum bicolor] gi|241927937|gb|EES01082.1| hypothetical protein SORBIDRAFT_03g028090 [Sorghum bicolor] Length = 588 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/352 (35%), Positives = 197/352 (55%), Gaps = 19/352 (5%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTLLAENDRF 69 +A+ + GY +T VQ A L L+ KDVL A+TG+GKTVAF + + STL E ++ Sbjct: 134 KAVKDAGYERMTEVQAATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEVLSTLPRERNQL 193 Query: 70 SPASAPL-ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAH 126 P P+ L + PTRELA QV E + L + V V IGG + +E+R +Q N Sbjct: 194 RP---PINLLVMCPTRELANQVAVEARKLLRYHRSLGVQVVIGGTRLTQEQRSMQANPCQ 250 Query: 127 IVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 I+V TPGRL DH+ G + +K +VLDEAD +LD+GFR DIE I+ S P++R+ L Sbjct: 251 ILVATPGRLKDHLENTPGFSSRLKGVKVLVLDEADRLLDMGFRRDIEKIIASIPRERQTL 310 Query: 184 MFSATISPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILR 240 +FSAT+ + ++ +KD VN E + H+ + ++ L + + ++L+ Sbjct: 311 LFSATVPEEVRQISHVAMKKDYRFVNTVKEGDEETHAQVSQMYMVAPLDLHFSILYDVLK 370 Query: 241 YHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 H A++A I+FC+T +VL++ + + SQ R+ R + Sbjct: 371 KHVAEDADYKVIIFCTTAMVTKLVAEVLSQLKLNIREIHSRKSQSARTKVSDEFRKSKGL 430 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + +++DV+ARG+D PD+ LVI + ++ E +HR GRTGR G++G + ++ Sbjct: 431 ILVSSDVSARGVDYPDVTLVIQVGIPADREQYIHRLGRTGRKGKEGQGLLLL 482 >gi|240274195|gb|EER37713.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H143] gi|325095426|gb|EGC48736.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H88] Length = 487 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/325 (36%), Positives = 190/325 (58%), Gaps = 14/325 (4%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 +DV+ A+TGSGKT+AFG+ +L N S A+ I PTRELA+Q+ +L Sbjct: 108 RDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRIS-AVIITPTRELAMQIYDQL-VK 165 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 + GV +A GG S +RR L+ A ++V TPGRL D + LN+ +K +VLDEA Sbjct: 166 FTPNGVGLACIYGGASKDDQRRALKK-ASVIVATPGRLKDFHSDESLNLKKVKYLVLDEA 224 Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI----AS 211 D MLD GF DI+ IL + P +KR+ +MF+AT ++ LA + K+ + V I +S Sbjct: 225 DRMLDKGFEQDIKDILSAMPSSRKRQTVMFTATWPISVRKLATTFMKEPITVTIGGDLSS 284 Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAE 266 + R ++ I +V ++++ ++++L +Y +NA +VFC + +R + + Sbjct: 285 DIRANTRIKQIVEVVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKKEATRIERFIRS 344 Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326 F+V + G+++Q ER N+L + G V +ATDVAARG+D+P ++LV++ E Sbjct: 345 KGFKVAGIHGDMNQTERFNSLDAFKLGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVE 404 Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQN 351 + +HR GRTGRAG G+++ + +N Sbjct: 405 DYVHRIGRTGRAGSDGLAITMFTEN 429 >gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4] gi|74896924|sp|Q54IV3|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName: Full=DEAD box protein 42 gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4] Length = 986 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 191/341 (56%), Gaps = 3/341 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 ++ +A++++ T +Q+ + L +D++ A+TGSGKT F S ++ + Sbjct: 315 ILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIM-DQPYL 373 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P+AL +APTRELA Q+ E + V GGVS ++ ++L+ G I+V Sbjct: 374 EKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIV 433 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D I+ K ++ + +VLDEAD+M D GF + I++ R+ L+FSAT Sbjct: 434 ATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATF 493 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAI 248 P + A+ D ++++I +SDI VL + SD+ N + N L ++ ++ Sbjct: 494 KPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGSV 553 Query: 249 -VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +F ST+ +V + + L + FQ L G+ +Q ERS +Q ++G+ + IATDVAARG Sbjct: 554 LIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARG 613 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +D+P ++ V++ + S + E+ HR GRTGRAG G++ +I Sbjct: 614 LDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLI 654 >gi|224153793|ref|XP_002337398.1| predicted protein [Populus trichocarpa] gi|222838972|gb|EEE77323.1| predicted protein [Populus trichocarpa] Length = 390 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 189/357 (52%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 36 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 89 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 90 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 149 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 150 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 209 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 210 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 269 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 270 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 329 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + + R + + NV V E PS Sbjct: 330 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLFDIQKFYNVVV--EELPS 384 >gi|7446043|pir||T15942 hypothetical protein F01F1.7 - Caenorhabditis elegans Length = 701 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/374 (32%), Positives = 191/374 (51%), Gaps = 29/374 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64 P + +A+ E GY+ T +Q + L+ +DV+ A+TGSGKT AF L L T L Sbjct: 308 FPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 367 Query: 65 ENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + +R P A+ +APTRELA Q+ E G+ IGG S + L+ Sbjct: 368 KMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRM 427 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177 G +V+ TPGRL D + + L ++ V+LDEAD MLD+GF D++ +L+ P Sbjct: 428 GVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKK 487 Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218 K R+ +MF+AT+S AI LA+ Y + V+I S + Sbjct: 488 DTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTER 547 Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278 ++ +V + +V +L I+F + + +K L + F+ L G Sbjct: 548 VEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGK 607 Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338 Q +R ALQ +++G + + +ATDVA RGID+ D+ LV++ +++ + E+ HR GRTGRA Sbjct: 608 GQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRA 667 Query: 339 GRKGMSV-FVIPQN 351 G+ G ++ F+ P + Sbjct: 668 GKHGKAITFLTPDD 681 >gi|332306494|ref|YP_004434345.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173823|gb|AEE23077.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 436 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 181/338 (53%), Gaps = 2/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I A++ +GY + + +Q + L KD++ +AQTG+GKT F L L L + + Sbjct: 12 ILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLLELL--NRGKHA 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 + AL + PTRELA QVG + + AV GGV ++ + L+ G I+V Sbjct: 70 RGNQARALVLTPTRELAAQVGASVVDYGKDLPLRSAVVFGGVGINPQMIKLRKGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ +VLDEAD MLD+GF DI+ +L P KR+ L+FSAT S Sbjct: 130 TPGRLLDLYNQNAVRFDDLEVLVLDEADRMLDMGFIHDIKKVLKLLPAKRQNLLFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LAK + V V+++ N ++ V + + A++ +++ + + +VF Sbjct: 190 DDIRALAKGLVNNPVEVSVSPPNTTVEAVEQSICPVDKNQKTPALIRMIKDNDWQQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R K L A+ G SQ R+ AL + G+ R +ATD+AARG+D+ Sbjct: 250 SRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAARGLDI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + E+ +HR GRTGRAG G ++ ++ Sbjct: 310 SQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLV 347 >gi|239978905|ref|ZP_04701429.1| putative DEAD-box RNA helicase [Streptomyces albus J1074] gi|291450788|ref|ZP_06590178.1| ATP-dependent RNA helicase [Streptomyces albus J1074] gi|291353737|gb|EFE80639.1| ATP-dependent RNA helicase [Streptomyces albus J1074] Length = 538 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 194/361 (53%), Gaps = 6/361 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ + AL+ G +Q A L L +D+L +TGSGKT+AFGLAL L Sbjct: 85 LPEPLLTALAAEGMAEPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLAL---LARTA 141 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R + A APLAL + PTRELA QV L G+ +A +GG+S++++ L+ G Sbjct: 142 GRRAEAGAPLALVLVPTRELAQQVTDALTPYAKALGLRMATVVGGLSLNKQASALRRGTE 201 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMF 185 +VV TPGRL D + + + VLDEAD+M D+GF + +LD ++P +RML F Sbjct: 202 VVVATPGRLKDLLDRGDCRLDQVAVSVLDEADQMTDMGFMPQVTALLDRTAPDGQRML-F 260 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I L + Y D V ++ + +++ + VA D D V + Sbjct: 261 SATLDRNIDRLVRGYLSDPVVHSVDPSAGAVTTMEHHVLYVA-DDTDKKAVALRIAARDG 319 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ S RF K L + + AL G SQ +R+ L+ ++G+ +AT+VAA Sbjct: 320 RVIMFVDTKRSADRFAKRLLANGVRASALHGGRSQPQRNRTLEQFKNGQVTALVATNVAA 379 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + DL+LV++ + ++ ++ LHR GRT RAG G V ++ +R RL A + Sbjct: 380 RGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRLMSAARI 439 Query: 366 S 366 + Sbjct: 440 T 440 >gi|255580688|ref|XP_002531166.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223529236|gb|EEF31209.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 585 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/381 (32%), Positives = 200/381 (52%), Gaps = 26/381 (6%) Query: 11 IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +GEAL++ YV T VQ + L +D++ AQTGSGKT AF + S ++ E Sbjct: 135 LGEALNQNIRRCKYVKPTPVQRNAIPIILAGRDLMACAQTGSGKTAAFCFPIISGIMREQ 194 Query: 67 DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 P PLAL ++PTREL+ Q+ E + +TGV V V GG ++++ R+L+ Sbjct: 195 YVQRPRGPRTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELE 254 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178 G I+V TPGRL D + +++ ++ + LDEAD MLD+GF I I++ P Sbjct: 255 RGVDILVATPGRLVDLLERARISLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPG 314 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ ++FSAT I LA ++ + + + I R V +D+ + ++++ Sbjct: 315 RRQTMLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIVQRVEFVHETDKRSHLMDL 374 Query: 239 LRYHGAKN---------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 L H + +VF T+ L + F + G+ +QQER AL+ Sbjct: 375 L--HAQRETEINIKHSLTLVFVETKKGADSLENWLCVNGFPATTIHGDRTQQEREMALRS 432 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 + G+ + +ATDVAARG+D+P + V++ +L ++ ++ +HR GRTGRAG+ G++ Sbjct: 433 FKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFN 492 Query: 350 QN---MQRRAERLFREANVSV 367 +N + R L +EAN V Sbjct: 493 ENNLSLARPLADLMQEANQEV 513 >gi|37362659|ref|NP_011932.2| Rrp3p [Saccharomyces cerevisiae S288c] gi|81175193|sp|P38712|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName: Full=Ribosomal RNA-processing protein 3 gi|285809971|tpg|DAA06758.1| TPA: Rrp3p [Saccharomyces cerevisiae S288c] Length = 501 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 109/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I +A Y T +Q + P L D++ AQTGSGKT AF + + + L + Sbjct: 89 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 147 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 148 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184 I++ TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P ++R + Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 321 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F T+A+ R + + F AL G+L+Q +R +L + + G+ + +ATDVA Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVA 381 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++V++ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427 >gi|289623983|ref|ZP_06456937.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648770|ref|ZP_06480113.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868972|gb|EGH03681.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 442 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 114/335 (34%), Positives = 172/335 (51%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + L +D++ +AQTG+GKT F L L L E + +P Sbjct: 15 ALEALGYQTPTPVQTQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL +APTRELA QV + + GGVS++ + L+ G ++V TPG Sbjct: 75 V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R + S L+ ++LDEAD MLDLGF +++ I PK+R+ L+FSAT S I Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N S + V V + + +++++ H +VF T Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V + L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ +L E+ +HR GRTGRAG G ++ ++ Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348 >gi|194068383|dbj|BAG55012.1| vasa [Saccostrea kegaki] Length = 422 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/319 (37%), Positives = 180/319 (56%), Gaps = 11/319 (3%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGREL 94 +D++ AQTGSGKT AF L + + ++ FS P AL +APTRELAVQ+ + Sbjct: 12 RDLMACAQTGSGKTAAFILPVLTGMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDA 71 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVV 153 T + V GG SV + R ++ G HI+VGTPGRL D I GKG ++++ LK ++ Sbjct: 72 RKFAYGTMLRPVVLYGGTSVGYQLRQVEQGTHILVGTPGRLIDII-GKGKISLAKLKYLI 130 Query: 154 LDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFSATISPAITTLAKNYQKDAVRVNI 209 LDEAD MLD+GF DI I L + PK +R+ LMFSAT I +A ++ D + + + Sbjct: 131 LDEADRMLDMGFGPDIRKIVEELGTPPKTERQTLMFSATFPKEIQEMAGDFLNDYLFLTV 190 Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269 +D+ V ++ + + +IL G + +VF + + L+++ F Sbjct: 191 GRVGGACTDVTQTVFEVDRQEKRSRLCDILTETGTEKTLVFVEQKRNADFLASYLSQNGF 250 Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329 ++ G+ Q ER AL+ + G+A V IAT VAARG+D+P ++ VI+ +L S+ + + Sbjct: 251 PTTSIHGDRLQAEREEALRDFKTGKAPVLIATSVAARGLDIPLVKHVINYDLPSSIDEYV 310 Query: 330 HRSGRTGRAGR--KGMSVF 346 HR GRTGR G K MS + Sbjct: 311 HRIGRTGRCGNLGKAMSFY 329 >gi|111225403|ref|YP_716197.1| ATP-dependent RNA helicase-like protein [Frankia alni ACN14a] gi|111152935|emb|CAJ64683.1| DEAD-box protein family; ATP-dependent RNA helicase-like protein [Frankia alni ACN14a] Length = 532 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/325 (36%), Positives = 178/325 (54%), Gaps = 4/325 (1%) Query: 26 VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 +QE L L D++ A+TG+GKT+AFG+ + T+LA ++ P AL + PTRE Sbjct: 6 IQELTLPLALARNDIIGQARTGTGKTLAFGIPIVQTVLAASEGAD--GRPQALVVVPTRE 63 Query: 86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145 L VQV ++ A G+ V GG + + L+ G IVVGTPGRL D R + L+ Sbjct: 64 LCVQVTSDVTRAGAGRGLRVLSVYGGRAYEPQLTALRAGVDIVVGTPGRLLDLARQRVLD 123 Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDA- 204 ++ ++ +VLDEADEMLDLGF D+E I+ P R+ ++FSAT+ + +LA+ + + Sbjct: 124 LAAVRTLVLDEADEMLDLGFLPDVERIMAQLPTSRQTMLFSATMPGPVISLARRFMQRPV 183 Query: 205 -VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 VR E R D+ + +L+ G A+VF TR + + + Sbjct: 184 HVRAEQPDETRTVPTTHQHVFRAHALDKMEVLARVLQAGGRGLAMVFVRTRRTADKVAED 243 Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323 L + F A+ G+L Q +R AL+ R G+ V +ATDVAARGID+ + V++ + Sbjct: 244 LDKRGFAAAAVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDISGVTHVVNYQCPE 303 Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348 + LHR GRTGRAG G++V + Sbjct: 304 DENVYLHRIGRTGRAGESGVAVTFV 328 >gi|319897620|ref|YP_004135817.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031] gi|317433126|emb|CBY81500.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031] Length = 415 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/346 (33%), Positives = 189/346 (54%), Gaps = 4/346 (1%) Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 F ++P ++ +AL+++G+ T +Q L L +DV AQTG+GKT+AF A Sbjct: 11 FSDLPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 LL D P AL +APTRELAVQ+ + E+L G+ A+ GG ++ + + Sbjct: 71 LLTYQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179 + G I++GT GR+ D+++ + + ++ VVLDEAD M DLGF DI ++L +P+ Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R ++FSAT+S + LA D + I E + I + D+ ++ ++ Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250 Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299 + IVF +T+ LA +V L+G+++Q++R + L+ DG + + Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310 Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ATDVAARG+ + D+ V + +L + E+ +HR GRTGRAG G+S+ Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356 >gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC BAA-894] gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894] Length = 474 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 193/377 (51%), Gaps = 9/377 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ A++E+GY T +Q + L KD++ SAQTG+GKT F L L L A N Sbjct: 10 PEIL-RAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRLTA-NQ 67 Query: 68 RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 P+ AL + PTRELA QVG + + V GGVS++ + L+ G Sbjct: 68 PHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKLRGGVD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +++ TPGRL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FS Sbjct: 128 VLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I +LA+ + V +A N + V + + ++ + Sbjct: 188 ATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLIGDGNWQQ 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ + + L + A+ G SQ R+ AL + G RV +ATD+AAR Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-RE 362 G+D+ +L V++ EL + PE+ +HR GRTGRA G + V V + R ERL RE Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKRE 367 Query: 363 ANVSVV--WEPAPSVEA 377 + +EP PS+ A Sbjct: 368 IPRMAIPGYEPDPSIPA 384 >gi|239814491|ref|YP_002943401.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] gi|239801068|gb|ACS18135.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110] Length = 661 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 196/386 (50%), Gaps = 50/386 (12%) Query: 8 PQVIGEALSERGYVNLTSVQEAIL----------NPDLREKDVLVSAQTGSGKTVAFGLA 57 P++I A+++ G+ T+VQ+ ++ + R D++VS+QTGSGKT AF L Sbjct: 85 PELIA-AVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKTAAFLLP 143 Query: 58 LASTLL------------------------------------AENDRFSPASAPLALAIA 81 + TLL N R A+ P AL + Sbjct: 144 VLHTLLKRQAEAEAQAKAEFQRLAAEAAARGEAVPKKPKRKDPTNARHFKAATPGALILC 203 Query: 82 PTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140 PTRELA QV + +E + G+ VA +GG+ + LQN A +VV TPGRL D R Sbjct: 204 PTRELAQQVAHDAIELVRHCRGLRVANVVGGMPYQLQIAKLQN-ADLVVATPGRLLDLQR 262 Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 + + +K +V+DEAD MLDLGF DD+ + + ++++ +MFSAT +P I LA+ Sbjct: 263 SMQIKLDQVKFLVVDEADRMLDLGFADDLAEVNQLTIERQQTMMFSATFAPRIQQLAQRV 322 Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSR 259 ++ R+ I S +H++I S +++ LR AIVF ST+ Sbjct: 323 MREPQRITIDSPQEKHANIKQSLYWADNSQHKRKLLDHWLRDTSINQAIVFASTQVECDG 382 Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 L + F VAL G LSQ R+ L +R G+ ++ +ATDVAARGID+P + V + Sbjct: 383 LANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTITHVFNF 442 Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSV 345 L E+ HR GRTGRAGR G+++ Sbjct: 443 GLPMKAEDYTHRIGRTGRAGRDGLAI 468 >gi|15226155|ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis thaliana] gi|75319077|sp|P93008|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21 gi|1707017|gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gi|17473908|gb|AAL38370.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gi|20259792|gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gi|330253781|gb|AEC08875.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana] Length = 733 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/356 (33%), Positives = 182/356 (51%), Gaps = 27/356 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY + +Q A + L+++DV+ A+TGSGKT AF L + LA R P Sbjct: 326 KAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM----LAYISRLPPM 381 Query: 73 S------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 S P A+ +APTRELA Q+ E G V +GG S+ + + G Sbjct: 382 SEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCE 441 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------- 179 IV+ TPGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 442 IVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENE 501 Query: 180 ----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229 R MFSAT+ P + LA+ Y ++ V V I + + I +++ S Sbjct: 502 EEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKES 561 Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 ++ + +L G K AIVF +T+ + K L + ++V L G SQ++R +L+ Sbjct: 562 EKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEG 621 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R R V +ATDV RGID+PD+ VI+ ++ + E HR GRTGRAG+ G++ Sbjct: 622 FRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVAT 677 >gi|315126209|ref|YP_004068212.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] gi|315014723|gb|ADT68061.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913] Length = 465 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 185/342 (54%), Gaps = 2/342 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+ E+GY T +Q + + +DV+ +AQTG+GKT F L L L + Sbjct: 8 LSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIERLSSGT 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + ++ AL + PTRELA+QV +E + V V GGV ++ + + L+ G Sbjct: 68 K--AKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL D + ++ +VLDEAD MLD+GF DI+ ++ P+KR+ LMFS Sbjct: 126 ILVATPGRLIDLHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQNLMFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LAK D V +++A++N + V + + + +++R + + Sbjct: 186 ATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKTALLSHLIRSNNWQQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R K L A+ G SQ R AL+ + G RV +ATD+ AR Sbjct: 246 VLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVATDIVAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ +L V++ +L + E+ +HR GRTGRAG G ++ + Sbjct: 306 GLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFV 347 >gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi] Length = 744 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 197/370 (53%), Gaps = 10/370 (2%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE+ +P I E L +G+ T++Q + L +D++ AQTGSGKT+A+ + + Sbjct: 120 FEDGGLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAY-VVPSLV 178 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + + P+AL +APTRELA Q+ + ++ GG + RDL Sbjct: 179 HIQHQESIRRGDGPIALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRDL 238 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA IV+ TPGRL D + N+ +VLDEAD MLD+GF I I+ R+ Sbjct: 239 ERGAEIVIATPGRLIDFLERGITNLKRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQ 298 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR 240 +LM+SAT + LA+ + D +++NI S N + + V V ++D ++ +L Sbjct: 299 VLMWSATWPKEVRQLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLT 358 Query: 241 YHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 A+ I+F T+ V T+++ + ++ VA+ G+ SQQER L R+GR + Sbjct: 359 EISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSAFRNGRQGI 418 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARG+D+ D++ VI+ + SN E+ +HR GRTGR+ G + + + +A Sbjct: 419 LVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 478 Query: 358 RL---FREAN 364 L REAN Sbjct: 479 DLINVLREAN 488 >gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 431 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/332 (35%), Positives = 176/332 (53%), Gaps = 1/332 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E GY T +Q + L+ +D+L AQTG+GKT AF L + + LL R P Sbjct: 16 ALNEEGYTTPTPIQAGAIPYLLQGRDLLGLAQTGTGKTAAFALPILNHLLTSKGRAHPKG 75 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL +APTRELA Q+ AV GGV R+ L+ G ++V PG Sbjct: 76 A-RALVLAPTRELASQIADSFASYARHMKFTHAVVFGGVGQGRQIEALRRGVDVLVAAPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + ++++ L+ +VLDEAD MLD+GF DI I+ + P R+ L+FSAT+ +I Sbjct: 135 RLLDLMGQGHVDLAGLEILVLDEADRMLDMGFVRDIRKIVATLPTDRQTLLFSATMPKSI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + LA +D V + + I + V ++ A+ ++ + A+VF Sbjct: 195 SELAHGLLRDPATVQVTPPSSTVDRIRQAVMYVDTGNKREALKLLVDSPKVERAVVFTLM 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + ++ L EH A+ G SQ R A+ R G +V +ATD+AARGID+ D+ Sbjct: 255 KHEANKVAAFLNEHGITAEAIHGNKSQGARERAMSGFRSGAVKVLVATDIAARGIDVDDV 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 V + +L + PE+ +HR GRT RAGR G +V Sbjct: 315 THVFNYDLPNVPESYVHRIGRTARAGRDGWAV 346 >gi|182437304|ref|YP_001825023.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465820|dbj|BAG20340.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 521 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 131/379 (34%), Positives = 197/379 (51%), Gaps = 13/379 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P + AL G +Q A L L +DVL +TGSGKT+AFGLAL L Sbjct: 85 MPAPLKAALVAEGMTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTA 141 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R + A PLAL + PTRELA QV L + +A +GG+S+ R+ L+ GA Sbjct: 142 GRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRIATVVGGMSIGRQAGALRGGAE 201 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185 +VV TPGRL D I + + VLDEAD+M D+GF + +LD +P +RML F Sbjct: 202 VVVATPGRLKDLIERGDCRLDRVTITVLDEADQMADMGFMPQVTELLDQVNPDGQRML-F 260 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + L + Y KD V ++ + +++ + V +D+ I G Sbjct: 261 SATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG-- 318 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 I+F T+ +V + T L + AL G SQ +R+ L+ + G V +AT+VAA Sbjct: 319 RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLERFKTGHVTVLVATNVAA 378 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + +L+LV++ + S+ ++ LHR GRT RAG G V ++ N +R RL +A + Sbjct: 379 RGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAGI 438 Query: 366 SVVWEPAPSVEAIRERDAQ 384 + P + +R +A+ Sbjct: 439 T------PQIAQVRSGEAE 451 >gi|156740947|ref|YP_001431076.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156232275|gb|ABU57058.1| DEAD/DEAH box helicase domain protein [Roseiflexus castenholzii DSM 13941] Length = 450 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 190/365 (52%), Gaps = 10/365 (2%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 +IF PQ I + + GY T +QE ++ L +DV+ AQTG+GKT AF L + Sbjct: 3 FEIFRFHPQ-INAGIRDLGYHTPTPIQEQVIPHALAGRDVIGIAQTGTGKTAAFVLPILH 61 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 L+ P A+ + PTRELA Q+ +E L TG+ GGV + + Sbjct: 62 HLMR-----GPRGRVRAMIVTPTRELAEQIQGVIEALGKHTGIRSVTLYGGVGYQGQIQR 116 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 L+ G I V PGRL DH+ L + HL+ + LDEAD+M D+GF D+ IL +P +R Sbjct: 117 LRRGVEIAVVCPGRLLDHLERGTLTLDHLEVLTLDEADQMFDMGFLPDVRRILRLAPVER 176 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 + ++FSAT+ A+ +LA+ +D + V I + + + + V + + ++ +L Sbjct: 177 QTMLFSATMPDAVRSLAREALRDPLTVQIG-RSAPVATVTHAIYPVPEHLKTSLLIELLE 235 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 A++ ++F T+ R LA ++ +L G LSQ R AL R GR ++ A Sbjct: 236 RTDAESVLIFTRTKHRAQRLGDTLARLGYRATSLHGNLSQNRRQAALDGFRSGRYQILTA 295 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAE 357 TD+AARGID+ + VI+ ++ E HR GRTGRA R G + ++ + M R E Sbjct: 296 TDIAARGIDVARISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRGDTAMVRAIE 355 Query: 358 RLFRE 362 RL E Sbjct: 356 RLIGE 360 >gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227] gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227] Length = 454 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ ++ + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLQNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|322815569|gb|EFZ24204.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi] Length = 544 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 199/377 (52%), Gaps = 13/377 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A +E G+ N T +Q A + P ++E +D++ AQTGSGKT A+ L L + LL + S Sbjct: 84 ACAEAGWQNPTRIQAATI-PVVKEGRDIIGVAQTGSGKTGAYVLPLVNWLLTQ----SKV 138 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV + L G+ VA +GG + + +L H+VVGTP Sbjct: 139 PYLSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSKRPHVVVGTP 198 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GR+ DH++ KG + L A+VLDEAD+MLD+ + +I+ IL+ P R+ ++FSAT++ Sbjct: 199 GRIKDHLQNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEHLPHSRQTMLFSATLNT 258 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L K D V + + +N + V + + + L + +VFC Sbjct: 259 KIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFAQMLSYLHLYLTRETGNHILVFC 318 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + A V R T L Q + L G + Q R+ AL ++G+ R+ + TDVA RG+D+ Sbjct: 319 RSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKIRILVCTDVAQRGLDIS 378 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 ++V++ L E+ +HR GRT RAG +G +V +I Q +R+ EA V E Sbjct: 379 HTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQRI--EATTGVKCEE 436 Query: 372 APSVEAIRERDAQRILQ 388 P ++E D +LQ Sbjct: 437 WP----VQEGDVAAVLQ 449 >gi|304411815|ref|ZP_07393426.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307303417|ref|ZP_07583172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|304349675|gb|EFM14082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306913777|gb|EFN44199.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 427 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 181/338 (53%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E YV+ T VQ A + L +DVL A TGSGKT AF + L L+ + Sbjct: 24 LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAY 83 Query: 75 PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA QV L K +V A GGVSV+ + + L+ GA ++V Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRAGADVLVA 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ + A+VLDEAD ML LGF +++ +LD+ P K++ L+FSAT Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L + + SE Q S I R + V + + ++++ H A++F Sbjct: 202 EEVRELTAKLLNAPLEYQLQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 S + + + + L++ G+ +Q R+ L ++G V IATD+AARGID+ Sbjct: 260 VSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L +VI+ +L +P + +HR GR+GRAG G++V +I Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357 >gi|195330738|ref|XP_002032060.1| GM23722 [Drosophila sechellia] gi|194121003|gb|EDW43046.1| GM23722 [Drosophila sechellia] Length = 399 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 7/341 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +++ +L Sbjct: 32 NLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 88 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L ++PTRELAVQ+ + + L V VCIGG ++ + R L G Sbjct: 89 ---DTTLRETQILCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIV GTPGR+ D I+ + L +K +VLDEADEML+ GF++ I + P ++++ Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ I + + D +R+ + + I V V + + + + ++ Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC+T+ V T+ + E F V ++ G++ Q+ER ++ R G++RV I TDV Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ + LVI+ +L +N E +HR GR+GR GRKG+++ Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366 >gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem] gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem] Length = 453 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/356 (34%), Positives = 186/356 (52%), Gaps = 21/356 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I +A+ GY T +Q + L +D++ SAQTG+GKT +F L LL Sbjct: 7 NLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALERLLTP 66 Query: 66 NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 SP P L + PTRELA+QV + V +GG+ + L Sbjct: 67 ----SPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLAQ 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 I+V TPGRL DH+ + +N S L+ +VLDEAD MLD+GF +D++ I +++P +R+ L Sbjct: 123 PVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIANAAPAERQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRV--------NIASENRQHSDIDYRAVLVALSDRDNAI 235 +F+AT+ A+ LA+ KD VRV N+ E R H D R ++ + Sbjct: 183 LFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMR-------HKNRLL 235 Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295 +++ AI+F +T+ + L AL G++SQ R+ + MMR G+ Sbjct: 236 QHLVSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKV 295 Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 R+ +ATDVAARG+D+ + VI+ +L E+ +HR GRTGRAG G+++ N Sbjct: 296 RLLVATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMN 351 >gi|318041670|ref|ZP_07973626.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0101] Length = 407 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/350 (33%), Positives = 187/350 (53%), Gaps = 11/350 (3%) Query: 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--- 73 E+GY N + +Q + L +DV+ +AQTG+GKT F L + L R P + Sbjct: 3 EKGYTNPSPIQTQCIPAVLEGRDVMAAAQTGTGKTAGFTLPMLERL-----RHGPHARNN 57 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG + + V GGV ++ + L+ GA ++V TPG Sbjct: 58 VVRALVLTPTRELAAQVGENVAAYSRHLDLRSDVVFGGVKINPQMMRLRGGADVLVATPG 117 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ ++ +VLDEAD MLD+GF DI+ IL P KR+ L+FSAT +I Sbjct: 118 RLMDLAQQNAVKLNRVEILVLDEADRMLDMGFIRDIQKILALLPAKRQNLLFSATFEASI 177 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V++ ENR + +++ ++ + + + ++++ + + +VF T Sbjct: 178 KKLATGLLHNPVQLQATPENRTATTVEHLLHPCDMARKPDLLCHLIKSNDWQQVLVFSRT 237 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R L + A+ G SQ R+ AL + G RV +ATD+AARGID+ L Sbjct: 238 KHGANRIADRLTQEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVATDIAARGIDIHQL 297 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360 V++ +L + E+ +HR GRTGRAG G +V ++ + R ERL Sbjct: 298 PHVVNLDLPNQAEDYVHRIGRTGRAGCNGHAVSLVAAEEHELLRAIERLI 347 >gi|289641997|ref|ZP_06474151.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca glomerata] gi|289508183|gb|EFD29128.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca glomerata] Length = 446 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 177/347 (51%), Gaps = 3/347 (0%) Query: 26 VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 +Q A L L ++VL A TGSGKT+ FGL + + L A+N +P P L + PTRE Sbjct: 1 MQAATLPDVLAGENVLGRASTGSGKTLGFGLPMLAEL-AKNRAVAPGR-PRGLILVPTRE 58 Query: 86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145 LA QV L+ L G+ + GG S+ R+ L+ G HIV+ TPGRL D I + Sbjct: 59 LAQQVHDALDPLSRPLGLRLRAVYGGTSISRQIGSLRRGVHIVIATPGRLTDLIERGACS 118 Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205 + + VLDEAD M DLGF + +LD++P + L+FSAT+ + L + Y + V Sbjct: 119 LEEIAITVLDEADYMCDLGFLPAVRALLDATPAGGQRLLFSATLDREVEVLVRQYLPNPV 178 Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265 V I SE Q S + A+ A +V L G+ +VF T+ R + L Sbjct: 179 LVAIDSETAQVSTLSRHALEAADPAAHTRLVTAL-AGGSGRTLVFARTQRGADRLAEQLT 237 Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325 L G ++Q RS AL +G RV +ATDVAARGI + +++V+HA L S+P Sbjct: 238 RSGVPAQPLHGGMAQNARSRALAGFAEGAHRVLVATDVAARGIHVDGVDIVVHAGLPSDP 297 Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + HR GRT RAG G V V + L R A EPA Sbjct: 298 KTYQHRGGRTARAGAHGADVLVSLPEERGLVRALLRAAGSDAQPEPA 344 >gi|225719408|gb|ACO15550.1| Eukaryotic initiation factor 4A-III [Caligus clemensi] Length = 403 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P L+ +DV+ AQ+G+GKT F +++ ++ + L Sbjct: 49 GFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSI------DTSLRETQCL 102 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ + L L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 103 VLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDM 162 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++ + SAT+ I + Sbjct: 163 IRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQICLISATLPHEILEMTS 222 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 223 KFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 282 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER + ++ R G++RV I TDV ARGID+ + LVI Sbjct: 283 DWLTEKMREANFTVSSMHGDVPQKERDDIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 342 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 343 NYDLPNNRELYIHRIGRSGRFGRKGVAI 370 >gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis] gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis] Length = 794 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/372 (32%), Positives = 193/372 (51%), Gaps = 16/372 (4%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P + + ++G+ T++Q + L +D++ AQTGSGKT+A+ L A + Sbjct: 150 FPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLP-AVVHINNQ 208 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R P+AL +APTRELA Q+ + + T V GG ++ RDL+ G Sbjct: 209 PRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDLERGVE 268 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ TPGRL D + ++ +VLDEAD MLD+GF I I+ R++LM+S Sbjct: 269 IVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 328 Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241 AT + LA+ + + ++VNI S + H+ + +V + D IV +++ Sbjct: 329 ATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQ----IVDVCDESEKIVKLIQLLTQ 384 Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 I+F T+ V T+ ++ ++ A+ G+ SQQER L R+GR + Sbjct: 385 ISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSIL 444 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 +ATDVAARG+D+ D++ VI+ + SN E+ +HR GRTGR+ G + + + +A Sbjct: 445 VATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAND 504 Query: 359 L---FREANVSV 367 L REAN ++ Sbjct: 505 LIQVLREANQTI 516 >gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14] Length = 463 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 105/342 (30%), Positives = 188/342 (54%), Gaps = 7/342 (2%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 + EA++ G+ + +Q+ + L +D++ A+TGSGKT AF + + +LL R Sbjct: 39 TLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQSLLRSPQRL 98 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 AL +APTRELA Q+ + E L A G+ A +GG+ + ++ L HI++ Sbjct: 99 ------YALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKPHIII 152 Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 TPGRL DH+ KG ++ +K +VLDEAD ML + F ++I I+ P +R +FSAT Sbjct: 153 ATPGRLVDHLENTKGFSLRTIKFLVLDEADRMLSMDFEEEINQIVQLMPSERNTYLFSAT 212 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 ++ + L + + +++ I + ++ + + +D + IL ++ + Sbjct: 213 MTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLFIPAKFKDCYLSYILNEVAGQSIL 272 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F ST + T +L FQ + L G++SQ R AL + ++ + TDVA+RG+ Sbjct: 273 IFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKTRKILVCTDVASRGL 332 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 D+P +++V++ ++ ++ ++ +HR GRT RAGR G++V + Q Sbjct: 333 DIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQ 374 >gi|149511217|ref|XP_001519340.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 757 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/393 (32%), Positives = 212/393 (53%), Gaps = 18/393 (4%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG L +Q KDV+ A+TG+GKT +F + L L + Sbjct: 187 LKARGVTYLFPIQAKTFGHVSSGKDVIAQARTGTGKTFSFAIPLIEKLQRDLKDQKRGRL 246 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L + PTRELA+QVGR+ + K + VA GG + + + ++NG I+VGTPGR Sbjct: 247 PKVLVLTPTRELAIQVGRDFSDITKK--LTVACFYGGTAYNGQINHIRNGIDILVGTPGR 304 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-----RRMLMFSATI 189 + DHI+ LN++ L+ VVLDE D+MLD+GF + +E IL + KK + L+FSAT Sbjct: 305 IRDHIQSGRLNLTSLQHVVLDEVDQMLDMGFAEQVEEILSVAYKKDSEDNPQTLLFSATC 364 Query: 190 SPAITTLAKNYQK-DAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKN 246 + +AK Y K +V++ + Q + +++ A+ + R I +++ + + Sbjct: 365 PHWVYDVAKKYMKVKYEQVDLIGKKTQKTAMTVEHLAIKCHWAQRAAVIGTVIQVYSGTH 424 Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303 IVFC T+ + + L+ + Q +L G++ Q++R L+ R G V +AT+V Sbjct: 425 GRTIVFCRTKKEATELS--LSPAIKQDAQSLHGDIPQKQREITLKGFRSGAFGVLVATNV 482 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 AARG+D+P+++LV+ + + E+ +HRSGRTGRAGR G+ V + + ++ ++A Sbjct: 483 AARGLDIPEVDLVVQSSPPEDVESYIHRSGRTGRAGRTGICVCFYQAKEEYQLSQVEQKA 542 Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396 ++ P+ + + ++ +L+ LDSI Sbjct: 543 GITFKRIGVPTTSEVVKASSKDVLRS---LDSI 572 >gi|33519584|ref|NP_878416.1| cold-shock DEAD-box protein A, inducible ATP-independent RNA helicase [Candidatus Blochmannia floridanus] gi|33517247|emb|CAD83630.1| Cold-shock DEAD-box protein A, inducible ATP-independent RNA helicase [Candidatus Blochmannia floridanus] Length = 487 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 193/372 (51%), Gaps = 19/372 (5%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I + LS GY +Q + L+ D+L A TGSGKT AF L L + + RF Sbjct: 17 IVDMLSNIGYQAPLPIQTQCIPLLLKGCDLLGMAHTGSGKTAAFLLPLLQNIDIK-QRFV 75 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNGAHIV 128 L I PTRELA+Q+G + ++ AV GG + + DL+ HI+ Sbjct: 76 QG-----LIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQNYRIQFNDLKKNPHII 130 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 +GTPGRL DH+ +GL+IS LK +++DEADEML +GF +DIE I+ P R+ +FSAT Sbjct: 131 IGTPGRLLDHL-SRGLDISKLKTLIIDEADEMLRMGFIEDIEHIIRYVPTHRQTALFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + +I L+ + + + I +DI LV + A++ L + I Sbjct: 190 LPVSIRKLSYKFMCNPKEIYINPSISACADIKQSYWLVHGISKHEALMRFLEVEKFEAVI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+++ + +++L + AL+G+++Q R + +R G + I TDVAARG+ Sbjct: 250 IFVRTKSATLQISEILQRFGYNSAALNGDMNQSVRCKTISRLRCGTLDILITTDVAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF------RE 362 D+ + VI+ ++ N +HR GRTGRAGR G S+ + +R+ LF R Sbjct: 310 DINRISFVINYDIPCNYNAYVHRIGRTGRAGRSGKSLLFV----ERQEYHLFNYVIKRRV 365 Query: 363 ANVSVVWEPAPS 374 N ++V P+ Sbjct: 366 LNSNIVKVKCPT 377 >gi|32363291|sp|Q88NB7|RHLB_PSEPK RecName: Full=ATP-dependent RNA helicase rhlB gi|24982750|gb|AAN66919.1|AE016320_7 ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440] Length = 398 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 185/338 (54%), Gaps = 8/338 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70 A+ + G+ T +Q +L LR +D + AQTG+GKT AF +++ S L +R+ Sbjct: 23 AIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERY- 81 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129 P AL IAPTREL VQ+ ++ L TG+ V +GG+ ++ + L+ I+V Sbjct: 82 -MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILV 140 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187 TPGRL D + +++ ++ +VLDEAD MLD+GF + I+ +P K R+ L+FSA Sbjct: 141 ATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA 200 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T + + LAK + + V I EN ++ VA SD+ + N++ + + Sbjct: 201 TFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERV 260 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF + + V R + L LSG++ Q +R L+ R+GR V +ATDVA RG Sbjct: 261 MVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRG 320 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 I + + VI+ L +P++ +HR GRTGRAG G+S+ Sbjct: 321 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSI 358 >gi|303256348|ref|ZP_07342364.1| RNA helicase DeaD [Burkholderiales bacterium 1_1_47] gi|302861077|gb|EFL84152.1| RNA helicase DeaD [Burkholderiales bacterium 1_1_47] Length = 510 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/287 (39%), Positives = 159/287 (55%), Gaps = 7/287 (2%) Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 L + PTREL +QV + +GV V GG R+ + L G IVV TPGR D Sbjct: 2 LILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKALSRGVQIVVATPGRALD 61 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 HIR LN++ +KAVVLDEADEMLD+GF +D+E I + P+KR+ +FSAT+ P I +A Sbjct: 62 HIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKRQTALFSATLPPKIAKIA 121 Query: 198 KNYQKDAVRVNIASEN---RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 +N+ DA + I E + + A +V + + A+ IL + AIVF TR Sbjct: 122 ENHLHDAFHILIPKEKVPEGEQPKVKQSAYIVGRNHKTAALGRILDIESPRLAIVFARTR 181 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V + L + V L G L Q +R ++ R + V +ATDVAARGID+ L Sbjct: 182 NEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDVIVATDVAARGIDIDHLT 241 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VI+ + S+ E +HR GRTGRAGR+G ++ + ++ R RL + Sbjct: 242 HVINFGIPSSAETYVHRIGRTGRAGREGTAITI----LEPRESRLLK 284 >gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25] Length = 444 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/352 (34%), Positives = 178/352 (50%), Gaps = 4/352 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + L +D++ +AQTG+GKT F + L L E + + S Sbjct: 15 ALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQLLTTEGPKVAANS 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL + PTRELA QV + + GGVS++ + L+ G I+V TPG Sbjct: 75 A-RALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMKLRKGVDILVATPG 133 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D R L ++ L+ +VLDEAD MLDLGF +++ I PKKR+ L+FSAT S I Sbjct: 134 RLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLLFSATFSDEI 193 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA D + + ++ N + + V V + V+++R K +VF T Sbjct: 194 RLLAGQMLNDPLTIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLMRKGRWKQVLVFAKT 253 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R V L + G+ Q R AL + ++ +ATDVAARG+D+ DL Sbjct: 254 RNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILVATDVAARGLDIEDL 313 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362 LV++ +L E+ +HR GRTGRAG G ++ ++ NM E L R+ Sbjct: 314 PLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIEMLTRQ 365 >gi|6324217|ref|NP_014287.1| Dbp2p [Saccharomyces cerevisiae S288c] gi|118284|sp|P24783|DBP2_YEAST RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD box protein 2; AltName: Full=p68-like protein gi|5272|emb|CAA36874.1| p68 protein [Saccharomyces cerevisiae] gi|1302034|emb|CAA95991.1| DBP2 [Saccharomyces cerevisiae] gi|285814541|tpg|DAA10435.1| TPA: Dbp2p [Saccharomyces cerevisiae S288c] Length = 546 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 10/369 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P + + G+ T +Q L +D++ A TGSGKT+++ L + A+ Sbjct: 120 FPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQ- 178 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125 +P P+ L +APTRELAVQ+ E + + + C+ GGV ++ RDL G+ Sbjct: 179 PLLAPGDGPIVLVLAPTRELAVQIQTECS-KFGHSSRIRNTCVYGGVPKSQQIRDLSRGS 237 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 IV+ TPGRL D + N+ + +VLDEAD MLD+GF I I+D R+ LM+ Sbjct: 238 EIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 297 Query: 186 SATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRD--NAIVNILRY 241 SAT + LA +Y D ++V + S + H+ V+ RD N + Sbjct: 298 SATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQ 357 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++F ST+ TK L E + +A+ G+ Q+ER LQ R+GR+ + +AT Sbjct: 358 DNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVAT 417 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--R 358 DVAARGID+ + VI+ ++ N E+ +HR GRTGRAG G ++ F QN A+ Sbjct: 418 DVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLIS 477 Query: 359 LFREANVSV 367 + REAN ++ Sbjct: 478 IMREANQNI 486 >gi|209877927|ref|XP_002140405.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66] gi|209556011|gb|EEA06056.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66] Length = 680 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/363 (34%), Positives = 191/363 (52%), Gaps = 16/363 (4%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 E I +++ + Y T VQ+ + L +D++ AQTGSGKT AF + +L Sbjct: 202 IEGIHEILLANIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIIMRML 261 Query: 64 AENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114 + +P + P+AL ++PTRELA+Q+ E TG+ V GG + Sbjct: 262 KDGPPPTPQQSSLRIKRVAYPVALVLSPTRELAIQIYEESRKFCYGTGIRTNVLYGGSEI 321 Query: 115 HRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFI 172 + DL G+ IVV TPGRL D I RGK + + +K ++LDEAD MLD+GF I E I Sbjct: 322 RNQILDLDRGSDIVVATPGRLRDLIDRGK-VYLKLIKFLILDEADRMLDMGFAPQIREII 380 Query: 173 LDS----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228 DS S + R+ +MFSAT I LAK++ + + + I R V Sbjct: 381 EDSDMPHSLEGRQTVMFSATFPREIQQLAKDFLHSYIFLTVGRVGATSGSIVQRVVYAEE 440 Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 + +V +L G +VF + + L + F V++ G+ SQQER +AL+ Sbjct: 441 DHKPRLLVKLLMEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALR 500 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + R G+ + +ATDVAARG+D+P++ VI+ ++ N ++ +HR GRTGRAG G++ + Sbjct: 501 LFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGLATSFV 560 Query: 349 PQN 351 +N Sbjct: 561 NEN 563 >gi|195452524|ref|XP_002073391.1| GK13178 [Drosophila willistoni] gi|194169476|gb|EDW84377.1| GK13178 [Drosophila willistoni] Length = 395 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 7/341 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +++ +L Sbjct: 28 NLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 84 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + L ++PTRELAVQ+ + + L V VCIGG ++ + R L G Sbjct: 85 ---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 141 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HIV GTPGR+ D I+ + L +K +VLDEADEML+ GF++ I + P ++++ Sbjct: 142 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 201 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT+ I + + D +R+ + + I V V + + + + ++ Sbjct: 202 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 261 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC+T+ V T+ + E F V ++ G++ Q+ER ++ R G++RV I TDV Sbjct: 262 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 321 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ + LVI+ +L +N E +HR GR+GR GRKG+++ Sbjct: 322 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 362 >gi|50121729|ref|YP_050896.1| ATP-dependent RNA helicase RhlE [Pectobacterium atrosepticum SCRI1043] gi|49612255|emb|CAG75705.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 483 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 191/372 (51%), Gaps = 8/372 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72 A+ E+GY + T VQ + L +D++ SAQTG+GKT F L L L + E Sbjct: 15 AIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSREAQNKGKG 74 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P+ AL + PTRELA Q+ ++ + V GGVS++ + L+ G I+V T Sbjct: 75 RRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQMMKLRGGVDILVAT 134 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S Sbjct: 135 PGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD 194 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + V + N + V + + ++ + + +VF Sbjct: 195 EIKALANKLLTNPASVEVVRRNSPSELVTQNVHFVDKRRKRELLSQLIGENNWQQVLVFT 254 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ + ++L + A+ G SQ R+ AL +DG RV +ATD+AARG+D+ Sbjct: 255 RTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGGIRVLVATDIAARGLDID 314 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV 368 L V++ EL + PE+ +HR GRTGRA G + V V + R ERL + + Sbjct: 315 QLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLKREIPRIA 374 Query: 369 ---WEPAPSVEA 377 +EP PS++A Sbjct: 375 IEGYEPDPSIKA 386 >gi|332529812|ref|ZP_08405766.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC 19624] gi|332040833|gb|EGI77205.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC 19624] Length = 565 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 196/368 (53%), Gaps = 8/368 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67 I +A+ E+GY T++QE + L+ D+L AQTG+GKT AF L L L + + Sbjct: 12 ILKAVREQGYETPTAIQEQAIPLILQGNDLLGGAQTGTGKTAAFTLPLLHNLTMRRSAQN 71 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 ++ + AL + PTRELA QV + + V GGV ++ + ++ G I Sbjct: 72 KWG-GNGIRALVLTPTRELAAQVEESVRNYGKYLQLESTVIFGGVGMNPQIARVKKGVDI 130 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL D + +++S ++ +VLDEAD MLD+GF D++ +L PK ++ L+FSA Sbjct: 131 LVATPGRLLDLQQQGFMDLSQVQMLVLDEADRMLDMGFIHDVKKVLALLPKDKQSLLFSA 190 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S I LA+ K+ V + N I V S + + +I+ Sbjct: 191 TFSDEIRALAEGLLKNPQSVQVTPRNTTVQRITQSVHTVGRSKKKALLAHIINAQDWSQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF T+ + + L ++ +AL G SQ R+ AL + G R +ATD+AARG Sbjct: 251 LVFTRTKFGANHVAEYLNKNGVTAMALHGNKSQGARTQALAGFKSGEIRALVATDIAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREAN 364 ID+ +L V++ E+ + PE+ +HR GRTGRAGR+G +V ++ Q ER F + Sbjct: 311 IDIDELPHVVNYEIPNIPEDYVHRIGRTGRAGREGQAVNLVCLDEQGFMAEIER-FTKQQ 369 Query: 365 VSVVWEPA 372 ++VV PA Sbjct: 370 IAVVETPA 377 >gi|37676819|ref|NP_937215.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|37201363|dbj|BAC97185.1| DNA and RNA helicase [Vibrio vulnificus YJ016] Length = 509 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/339 (35%), Positives = 183/339 (53%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L A+ R Sbjct: 12 ILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL-AKGPRVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ AL + PTRELA QV +E ++Y++ + AV GGV ++ + L+ GA ++V Sbjct: 71 -ANHIRALILTPTRELAAQV-QENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ +VLDEAD MLD+GF DI IL P KR+ L+FSAT Sbjct: 129 ATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + + +++ N ++ + + + +++ + +V Sbjct: 189 SDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLIKDGDWRQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R L + A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGDVRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLV 347 >gi|297303643|ref|XP_001095294.2| PREDICTED: ATP-dependent RNA helicase DDX3X [Macaca mulatta] Length = 738 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 297 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 355 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 356 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 415 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 416 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 475 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 476 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 535 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 536 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 595 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 596 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 643 Query: 362 EANVSVV 368 E N+++ Sbjct: 644 ERNINIT 650 >gi|261251481|ref|ZP_05944055.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891] gi|260938354|gb|EEX94342.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891] Length = 443 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/328 (35%), Positives = 184/328 (56%), Gaps = 5/328 (1%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T +Q+ + + KD+L S++TGSGKT+AF L + L +N FS A P AL +APT Sbjct: 25 TEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KNKAFS-AKDPRALVLAPT 82 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA QV EL + + +GG + + + + L+ +V TPGRL DH+ + Sbjct: 83 RELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKALRKYPKFIVATPGRLADHLEHRS 142 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKNYQ 201 L + L+ +VLDEAD MLDLGF ++ I +++ +RR LMFSAT+ A + +A Sbjct: 143 LFLDGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAEVNDIAFEML 202 Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260 R+ + + + +H DI + L D AI+ IL K I+F +TR R Sbjct: 203 DAPKRIAVGAASEEHKDITQKFYLCDHLDHKEAILERILEEAQYKQLIIFTATRIDTERL 262 Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 T+ L E + VALSG L+Q +R+ + ++ + TDVA+RG+D+ ++ V++ + Sbjct: 263 TQKLNEKKLKAVALSGSLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHVVNFD 322 Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + + E +HR GRTGRAG KG +V ++ Sbjct: 323 MPKHTEEYVHRVGRTGRAGNKGDAVSLV 350 >gi|237807743|ref|YP_002892183.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis DSM 9187] gi|237500004|gb|ACQ92597.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 438 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/361 (33%), Positives = 195/361 (54%), Gaps = 13/361 (3%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 V+ +A+ E G+ T++Q ++ + +DV+ SA TG+GKT AF L + ++ + R Sbjct: 11 VLLQAVEELGFKRPTTIQSQVIPVAMEGRDVMASAPTGTGKTAAFLLPIMQHMI-DFPRR 69 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P A AL + PTRELA+Q+ + E L A T + VA IGGV+ ++ L+ I++ Sbjct: 70 RPGPA-RALILTPTRELALQITEQAEALAAYTHMKVASIIGGVAEEKQLPALEKTVDIII 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL +I + + ++ +VLDEAD MLD+GF D++ I + +++ ++FSAT+ Sbjct: 129 ATPGRLMQYIEDERFDSRDIEILVLDEADRMLDMGFIGDVDRIAAEARWRKQTMLFSATL 188 Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----HGA 244 A + A++ KD + + I LV +D N+L+Y Sbjct: 189 EGAGLKKFAEDLLKDPAELYAEPPRSERKKIQQ---LVYFADTAEHKFNLLKYLLQQEDV 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 +I+F TR ++ L + L GE+ Q++R AL R R ++ +ATDVA Sbjct: 246 TRSIIFVKTRERLAELVSQLQANGIDCAWLRGEMEQEKRIEALNRFRSDRVKILVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361 +RGIDLPD+ V + ++ + + +HR GRTGRAG+KG ++ +I + M R ER Sbjct: 306 SRGIDLPDVSHVFNYDMPRSADTYIHRIGRTGRAGKKGCAINLIEAHDVGMMERVERYAE 365 Query: 362 E 362 E Sbjct: 366 E 366 >gi|153001334|ref|YP_001367015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella baltica OS185] gi|151365952|gb|ABS08952.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] Length = 427 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 181/338 (53%), Gaps = 8/338 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E YV+ T VQ A + L +DVL A TGSGKT AF + L L+ + Sbjct: 24 LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAY 83 Query: 75 PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 L + PTRELA QV L K +V A GGVSV+ + + L+ GA ++V Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRAGADVLVA 141 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + + ++ + A+VLDEAD ML LGF +++ +LD+ P K++ L+FSAT Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + L + + SE Q S I R + V + + ++++ H A++F Sbjct: 202 EEVRELTAKLLNAPLEYQLQSE--QESTIHQRVITVNRPMKTALLAHLIKEHEWSQALIF 259 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 S + + + + L++ G+ +Q R+ L ++G V IATD+AARGID+ Sbjct: 260 VSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L +VI+ +L +P + +HR GR+GRAG G++V +I Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357 >gi|300779124|ref|ZP_07088982.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910] gi|300504634|gb|EFK35774.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910] Length = 373 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 186/342 (54%), Gaps = 7/342 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ I A++E GY T +Q + L KD++ AQTG+GKT AF + + L Sbjct: 8 NLINAIIRAVTEAGYSKPTEIQYTAIPHILAGKDIIGCAQTGTGKTAAFAMPILQLL--- 64 Query: 66 NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123 +++P + L + PTRELA+Q+ +Y+K + + I GGVS + L+ Sbjct: 65 -KKYTPDHKEIRTLILTPTRELAIQIEENFA-VYSKYLPLSQLSIYGGVSAGGQLAALRK 122 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 I+V TPGRL D + + +++S ++ VLDEAD MLD+GF +D++ +L P+KR+ L Sbjct: 123 RVDILVATPGRLLDLVNQRHIDLSKIEIFVLDEADRMLDMGFINDVKKVLKLIPQKRQTL 182 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 FSAT+ I A+ + V+V + + + V D+ ++++L+ Sbjct: 183 FFSATMPSGIRKFAETILNNPVKVTVTPVSSTAQTVKQSVYFVEKRDKTGLLIDLLQNEN 242 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++VF T+ ++ + L A+ G SQ R NAL + + +V IATD+ Sbjct: 243 MRRSLVFTRTKYIANKLVQQLEGVGIFAAAIHGNKSQTARQNALDDFKSSKIKVLIATDI 302 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARGID+ DL V++ EL + PE +HR GRTGRAG +G ++ Sbjct: 303 AARGIDIDDLPHVVNYELPNIPETYVHRIGRTGRAGTEGTAI 344 >gi|194863293|ref|XP_001970368.1| GG23409 [Drosophila erecta] gi|190662235|gb|EDV59427.1| GG23409 [Drosophila erecta] Length = 526 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 136/388 (35%), Positives = 193/388 (49%), Gaps = 50/388 (12%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L++ G T +Q+ + L +D + +A+TGSGKT AF L + L E P S Sbjct: 22 LTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEE-----PVSH 76 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 AL + PT ELA Q+ + GV V V GG E + L HIVV PGR Sbjct: 77 -FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGR 135 Query: 135 LCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 L DH+ G + +LK +V+DEAD ML+ F + + I PKKR+ L FSAT+ Sbjct: 136 LADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKKRQNLFFSATM---- 191 Query: 194 TTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILRYH-- 242 K++ K++ IAS E Q SD+ D R +L A DRD ++ LR + Sbjct: 192 ----KDFIKESSIFPIASDCFEWSQDSDVATVDTLDQRYLLCADYDRDMVLIEALRKYRE 247 Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 + N ++F +T+ + L V L G + Q+ER AL + + R IA Sbjct: 248 ENESANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQVRTLIA 307 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM------ 352 TDVAARG+D+P +ELV++ L P+ +HR GRT RAGRKGM S+F P+++ Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLGAI 367 Query: 353 --------------QRRAERLFREANVS 366 QR ER+F + NV+ Sbjct: 368 EEEINTKLTEHPIDQRMVERIFMQVNVT 395 >gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC 6260] Length = 397 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/341 (31%), Positives = 187/341 (54%), Gaps = 7/341 (2%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ + + + G+ +++Q + +R +D + AQ+G+GKT F + + S + + Sbjct: 30 NLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSLIDTK 89 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + AL ++PTRELA Q+ +E L V CIGG V + + LQ G Sbjct: 90 SKDCQ------ALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQ 143 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 HI+ GTPGR+ D I+ + + H+K +VLDEADE+L GF++ I I + P ++++ Sbjct: 144 HIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVVVV 203 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244 SAT++P + + + D V++ + ++ I + D + + + ++ Sbjct: 204 SATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLYDNLTI 263 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 A++FC+T+A V+ + + F V A+ G++ Q++R + ++ R G RV I+TDV Sbjct: 264 TQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLISTDVW 323 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ + LVI+ +L + EN +HR GR+GR GRKG ++ Sbjct: 324 ARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAI 364 >gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638] gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638] Length = 462 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/342 (33%), Positives = 187/342 (54%), Gaps = 3/342 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ A++E+GY+ T +Q+ + L +D++ SAQTG+GKT F L L L+ +N+ Sbjct: 10 PEIL-RAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQRLV-QNE 67 Query: 68 RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P+ AL + PTRELA Q+G + + V GGVS++ + L++G Sbjct: 68 PHAKGRRPVRALILTPTRELAAQIGENVREYSRYLDIRSLVVFGGVSINPQMMKLRSGVD 127 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++V TPGRL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FS Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LA+ ++ + + +A N + V + + ++ + Sbjct: 188 ATFSDEIKGLAEKLLRNPLEIEVARRNTASEQVSQYVHFVDKKRKRELLSQMIGEGNWQQ 247 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ + + L + + A+ G SQ R+ AL + G RV +ATD+AAR Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ +L V++ EL + PE+ +HR GRTGRA G ++ ++ Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349 >gi|163838674|ref|NP_001106217.1| eukaryotic initiation factor 4A-III [Bombyx mori] gi|110376569|gb|ABG73410.1| eIF4AIII protein [Bombyx mori] Length = 405 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +++ TL + L Sbjct: 51 GFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL------DTTLRETQVL 104 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 105 ILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 164 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 165 IRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTS 224 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 225 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 284 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER N ++ R G++RV I TDV ARGID+ + LVI Sbjct: 285 DWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 344 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 345 NYDLPNNRELYIHRIGRSGRFGRKGVAI 372 >gi|242791510|ref|XP_002481772.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Talaromyces stipitatus ATCC 10500] gi|218718360|gb|EED17780.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Talaromyces stipitatus ATCC 10500] Length = 387 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 183/331 (55%), Gaps = 13/331 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 GY + ++VQ + + +D + AQ+G+GKT F +++ T++ E Sbjct: 32 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQ-------- 83 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + L V CIGG +V + R L+ G H+V GTPGR+ Sbjct: 84 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEYGQHVVSGTPGRV 142 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L ++K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + Sbjct: 143 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 202 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 203 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 262 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 263 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 322 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 LVI+ +L SN EN +HR GR+GR GRKG+++ Sbjct: 323 LVINYDLPSNRENYIHRIGRSGRFGRKGVAI 353 >gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 494 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 179/340 (52%), Gaps = 6/340 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A++++GY + +QE + L KDV+ +AQTG+GKT F L L L Sbjct: 12 ILDAVAKQGYEKPSPIQEKAIPAILEGKDVMAAAQTGTGKTAGFTLPLLERLAGG----C 67 Query: 71 PASAP--LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 PA + AL + PTRELA QVG + + AV GGV V+ + ++ GA ++ Sbjct: 68 PARSNHVRALVLTPTRELAAQVGESVATYGKNLRISSAVVFGGVKVNPQMLRMRKGADVL 127 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D + ++ +VLDEAD MLD+GF DI IL PK+R+ L+FSAT Sbjct: 128 VATPGRLMDLHSQNAVKFRDIEILVLDEADRMLDMGFIRDIRKILALLPKERQNLLFSAT 187 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 S I LAK D V +++ N+ + V + N + +L K + Sbjct: 188 FSDEIRELAKGLVNDPVEIDVNPRNQTARTVKQWICPVDKKKKPNLLTKLLSERNWKQVL 247 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ ++ + L A+ G SQ R+ AL + G RV +ATD+AARG+ Sbjct: 248 VFTKTKHGANKLSAHLESRGITAAAIHGNKSQGARTKALANFKAGEIRVLVATDIAARGL 307 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ L V++ +L E+ +HR GRTGRAG +G ++ ++ Sbjct: 308 DIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCEGEAISLV 347 >gi|260581720|ref|ZP_05849517.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127] gi|260095313|gb|EEW79204.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127] Length = 415 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/338 (33%), Positives = 185/338 (54%), Gaps = 2/338 (0%) Query: 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69 ++ +AL+++G+ T +Q L L +DV AQTG+GKT+AF A LL D Sbjct: 19 IVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHHLLTHQDPN 78 Query: 70 SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 P AL +APTRELAVQ+ + E+L G+ A+ GG ++ + ++ G I++ Sbjct: 79 LEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGVDILI 138 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSA 187 GT GR+ D+++ + + ++ VVLDEAD M DLGF DI ++L +P+ R ++FSA Sbjct: 139 GTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQARLTMLFSA 198 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T+S + LA D + I E + I + D+ ++ ++ + Sbjct: 199 TLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEWPERC 258 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF +T+ LA +V L+G+++Q++R + L+ DG + +ATDVAARG Sbjct: 259 IVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNLDILVATDVAARG 318 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + + D+ V + +L + E+ +HR GRTGRAG G+S+ Sbjct: 319 LHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356 >gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299] gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299] Length = 639 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/356 (31%), Positives = 196/356 (55%), Gaps = 13/356 (3%) Query: 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 +K+F +I I + + N T VQ+ + L+ +D++ AQTGSGKT AF + Sbjct: 184 IKLFADIDFGAAINRNIQRCKFKNPTPVQKYAIPISLKRRDLMACAQTGSGKTAAFCFPI 243 Query: 59 ASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 ++ + R + P+AL ++PTRELA+Q+ E +TGV V GG Sbjct: 244 IHGIIDRGLQAPRGGRKTFPIALVLSPTRELAIQIHEESRKFAYQTGVASVVVYGGAPAA 303 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 ++ R+++ G +++ TPGRL D + +++ ++ + LDEAD MLD+GF I I++ Sbjct: 304 QQFREMERGCDMLIATPGRLIDLVDRAKISLERIQYLALDEADRMLDMGFEPQIRQIVEQ 363 Query: 176 ----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSD 230 P R+ ++FSAT I +A ++ +D + + + H+ I V + +D Sbjct: 364 RGMPPPGDRQTMLFSATFPKEIQRMASDFLQDYIFLTVGRVGSSHTLITQTIEYVQSYND 423 Query: 231 RDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 + +++++ H + +VF T+ + L++ F ++ G+ +QQER AL+ Sbjct: 424 KCQMLMDLV--HAVQGLTLVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQEREWALKS 481 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R G+ + +ATDVAARG+D+P + VI+ +L S+ ++ +HR GRTGRAG+KG++ Sbjct: 482 FRSGKTPILVATDVAARGLDIPHVTHVINFDLPSDVDDYVHRIGRTGRAGKKGLAT 537 >gi|212534920|ref|XP_002147616.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Penicillium marneffei ATCC 18224] gi|212534922|ref|XP_002147617.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Penicillium marneffei ATCC 18224] gi|242791505|ref|XP_002481771.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Talaromyces stipitatus ATCC 10500] gi|210070015|gb|EEA24105.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Penicillium marneffei ATCC 18224] gi|210070016|gb|EEA24106.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Penicillium marneffei ATCC 18224] gi|218718359|gb|EED17779.1| eukaryotic translation initiation factor eIF-4A subunit, putative [Talaromyces stipitatus ATCC 10500] Length = 399 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 110/328 (33%), Positives = 181/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + ++VQ + + +D + AQ+G+GKT F +++ + + AL Sbjct: 44 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVI------DTVVRETQAL 97 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + L V CIGG +V + R L+ G H+V GTPGR+ D Sbjct: 98 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEYGQHVVSGTPGRVADM 157 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L ++K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 158 IRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 217 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V + + + + ++ A++FC+TR V Sbjct: 218 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 277 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + LVI Sbjct: 278 DWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 337 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L SN EN +HR GR+GR GRKG+++ Sbjct: 338 NYDLPSNRENYIHRIGRSGRFGRKGVAI 365 >gi|147834872|emb|CAN70196.1| hypothetical protein VITISV_040309 [Vitis vinifera] Length = 410 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/348 (34%), Positives = 187/348 (53%), Gaps = 7/348 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 + +L + PEN LHR GR+GR GRKG+++ + ++ +R + R NV Sbjct: 353 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNV 400 >gi|6635383|gb|AAF19805.1| EIF4A protein [Brassica oleracea] Length = 354 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/352 (34%), Positives = 189/352 (53%), Gaps = 9/352 (2%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 +++Q+ + P + DV+ AQ+G+GKT F S +L + D ++ AL +APT Sbjct: 5 SAIQQRGIIPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YTLVQCQ-ALVLAPT 58 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA Q+ + + L GV V C+GG SV ++R LQ+G H+VVGTPGR+ D +R + Sbjct: 59 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQS 118 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203 L +K VLDEADEML GF+D I I P K ++ +FSAT+ P + + + Sbjct: 119 LRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNK 178 Query: 204 AVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 VR+ + + I V V + + + ++ +++F +TR V T Sbjct: 179 PVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTD 238 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI+ +L Sbjct: 239 KMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLP 298 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + PEN LHR GR+GR GRKG+++ + + +R + + NV V E PS Sbjct: 299 TQPENYLHRIGRSGRFGRKGVAINFMTTDDERMLSDIQKFYNVVV--EELPS 348 >gi|119775538|ref|YP_928278.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B] gi|119768038|gb|ABM00609.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis SB2B] Length = 407 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/343 (33%), Positives = 181/343 (52%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P + L++ G+V T VQ + L D++V A TG+GKT AF L + + LLA+ Sbjct: 7 TLPSPLANNLAKLGFVEPTEVQAGAIPMMLAGDDLMVKAATGTGKTAAFLLPILARLLAD 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 AP AL + PTREL QV + L + V +A GGV + + ++ G Sbjct: 67 EVASRNLPAPRALVLVPTRELCQQVYDAAKALAKGSAVRIAQVYGGVPLESQLNAIKGGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH++ + L I + +V DEAD MLD+GF D+I ++ K R+ +F Sbjct: 127 DLMVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAKTRQTALF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + LAK+ + IA+ I+ + + + I ++L + Sbjct: 187 SATLGDNVWQLAKSLMDSPKLLEIAAAKDAKPLIEEQVYQLDSERKFEFICHLLGKNSWS 246 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ + T L E VA+ +LSQ++R L + ARV +ATDVAA Sbjct: 247 QVLIFSRTKEGADKLTAKLVEAGHSAVAMHADLSQRQREQNLADFKAADARVLVATDVAA 306 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RG+D+ L +I+ EL E+ +HR GRTGRAG G+++ ++ Sbjct: 307 RGLDIQALPCIINVELPFKKEDYVHRIGRTGRAGSAGLAISLL 349 >gi|124267364|ref|YP_001021368.1| ATP-independent RNA helicase [Methylibium petroleiphilum PM1] gi|124260139|gb|ABM95133.1| ATP-independent RNA helicase [Methylibium petroleiphilum PM1] Length = 473 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/332 (37%), Positives = 183/332 (55%), Gaps = 8/332 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + GY ++T VQ A L L +D++ A+TGSGKT AF ALA + R S Sbjct: 31 LEQLGYHSMTPVQAATLPIALAGRDLIAQAKTGSGKTAAF--ALALLARLDPRRLDVQS- 87 Query: 75 PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L + PTRELA QV +EL L ++ + GG ++ + LQ+GAHIVVGTPG Sbjct: 88 ---LVLCPTRELADQVTQELRRLARSQENTKILTLCGGATMRPQLASLQHGAHIVVGTPG 144 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ DH+ L ++ L +VLDEAD MLD+GF DDI + P +R+ L+FSAT I Sbjct: 145 RIIDHLERGSLALASLNTLVLDEADRMLDMGFFDDIAAVARHCPPQRQTLLFSATYPDGI 204 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 L+ + + V + S+ + I R V R +A+ +L + + + FC+T Sbjct: 205 ARLSAQFLRQPEHVRLESQ-QDAGKIRQRFYEVTEEQRLHAVGLLLDHFRPASTLAFCNT 263 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + VL+ Q +AL G+L Q+ER L + V +ATDVAARG+D+ L Sbjct: 264 KQQCRDLVAVLSAQGVQALALHGDLEQRERDQVLMQFANRSCSVLVATDVAARGLDVEQL 323 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 E V++ ++S +PE +HR GRTGRA + G ++ Sbjct: 324 EAVVNVDISPDPEVHIHRIGRTGRADQAGWAL 355 >gi|308081024|ref|NP_001183303.1| hypothetical protein LOC100501699 [Zea mays] gi|238010618|gb|ACR36344.1| unknown [Zea mays] Length = 643 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/380 (32%), Positives = 202/380 (53%), Gaps = 23/380 (6%) Query: 11 IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64 +G+AL+E YV T +Q + + +D++ AQTGSGKT AF + S +L Sbjct: 182 LGDALNENIRRCKYVKPTPLQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGILKSP 241 Query: 65 ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + R + + PLAL ++PTREL+VQ+ E +TGV V V GG + + R+L Sbjct: 242 KPHQRSRSTRTACPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPITNQLREL 301 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179 + G I+V TPGRL D + +++ +K + LDEAD MLD+GF I I++ P++ Sbjct: 302 ERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEGMDMPQR 361 Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ ++FSAT I +A ++ D + + + I R V SD+ + +++ Sbjct: 362 GERQTMLFSATFPKEIQRMAADFLADYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSYLMD 421 Query: 238 ILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 ++ A +VF T+ L + F ++ G+ +QQER +AL+ Sbjct: 422 LIHAQKANGTHGKHALTLVFVETKRGADALEDWLFRNGFPATSIHGDRTQQEREHALRSF 481 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + G + +ATDVAARG+D+P + VI+ +L ++ ++ +HR GRTGRAG+ G++ + Sbjct: 482 KSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 541 Query: 351 N---MQRRAERLFREANVSV 367 + + R L +EAN V Sbjct: 542 SNTTLARPLSDLMKEANQEV 561 >gi|156972680|ref|YP_001443587.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi ATCC BAA-1116] gi|189040086|sp|A7MXT4|RHLB_VIBHB RecName: Full=ATP-dependent RNA helicase rhlB gi|156524274|gb|ABU69360.1| hypothetical protein VIBHAR_00338 [Vibrio harveyi ATCC BAA-1116] Length = 437 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 187/342 (54%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65 PQV E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL E Sbjct: 18 PQVT-EGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P + P A+ +APTRELA+Q+ + L A TG+ A+ GG S ++ LQ+G Sbjct: 77 HEGRKP-TQPRAIIMAPTRELAIQIFNDAAPLIASTGLKAALAYGGESYDKQLAKLQDGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 I++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S + LA + + V + E + I + D+ + ++ Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 AIVF +T+ LA +V L+G++ Q++R L+ G + +ATDV Sbjct: 256 PDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|160380611|sp|A6ZRX0|DBP2_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD box protein 2; AltName: Full=p68-like protein gi|151944424|gb|EDN62702.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789] gi|190409099|gb|EDV12364.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a] gi|259149249|emb|CAY82491.1| Dbp2p [Saccharomyces cerevisiae EC1118] Length = 546 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 8/368 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P + + G+ T +Q L +D++ A TGSGKT+++ L + A+ Sbjct: 120 FPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQ- 178 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 +P P+ L +APTRELAVQ+ E + + GGV ++ RDL G+ Sbjct: 179 PLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSE 238 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ TPGRL D + N+ + +VLDEAD MLD+GF I I+D R+ LM+S Sbjct: 239 IVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 298 Query: 187 ATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRD--NAIVNILRYH 242 AT + LA +Y D ++V + S + H+ V+ RD N + Sbjct: 299 ATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQD 358 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 ++F ST+ TK L E + +A+ G+ Q+ER LQ R+GR+ + +ATD Sbjct: 359 NEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATD 418 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--RL 359 VAARGID+ + VI+ ++ N E+ +HR GRTGRAG G ++ F QN A+ + Sbjct: 419 VAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISI 478 Query: 360 FREANVSV 367 REAN ++ Sbjct: 479 MREANQNI 486 >gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6] gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6] Length = 509 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 183/339 (53%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L A+ R Sbjct: 12 ILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL-AKGPRVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ AL + PTRELA QV +E ++Y++ + AV GGV ++ + L+ GA ++V Sbjct: 71 -ANHIRALILTPTRELAAQV-QENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ ++LDEAD MLD+GF DI IL P KR+ L+FSAT Sbjct: 129 ATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + + +++ N ++ + + + +++ + +V Sbjct: 189 SDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLIKDGDWQQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R L + A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLV 347 >gi|307208568|gb|EFN85902.1| Eukaryotic initiation factor 4A-III [Harpegnathos saltator] Length = 403 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P ++ +DV+ AQ+G+GKT F +A+ +L + L Sbjct: 49 GFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQSLDTQ------VRETQVL 102 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 103 VLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 162 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 I+ + L +K +VLDE+DEML+ GF++ I + P ++++ SAT+ I + Sbjct: 163 IKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTS 222 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 223 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 282 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER N ++ R G +RV I TDV ARGID+ + LVI Sbjct: 283 DWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGASRVLITTDVWARGIDVQQVSLVI 342 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+S+ Sbjct: 343 NYDLPNNRELYIHRIGRSGRFGRKGVSI 370 >gi|148244296|ref|YP_001218990.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius okutanii HA] gi|146326123|dbj|BAF61266.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius okutanii HA] Length = 422 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/350 (33%), Positives = 186/350 (53%), Gaps = 5/350 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ ++GY + +Q + L KDV+ +AQTG+GKT F L + L + + Sbjct: 12 ILKAIEQKGYSEPSPIQNQSIPAILNGKDVMAAAQTGTGKTACFALPILEIL--SKKKPT 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 ++ L + PTRELA+QV + + +V GGV ++ + + L +G I+V Sbjct: 70 KSNQVRTLILTPTRELAIQVSDSVTTYGKYLPLKSSVVFGGVKINPQMQRLCSGVDILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D + L+ VV DEAD MLD+GF +DI+ IL P K++ LMFSAT S Sbjct: 130 TPGRLLDLYSQNSVKFDMLEIVVFDEADRMLDMGFINDIKRILKILPSKKQTLMFSATFS 189 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I TLAK+ + V +++ N I V S + + ++++ H +VF Sbjct: 190 NKILTLAKSLVNNPVEISVTPRNSTVKAIKQWIHPVDKSKKHALLTHLIQEHNWHQVLVF 249 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ +R L + + A+ SQ R+ AL ++ V +ATD+AARGI++ Sbjct: 250 SRTKYGANRIVNQLEKKKIRATAIHSNKSQGARTRALLDFKNHEVNVLVATDIAARGIEI 309 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 L VI+ +L PE+ +HR GRTGRAG KG ++ ++ + A++LF Sbjct: 310 NQLPHVINFDLPYVPEDYVHRIGRTGRAGSKGEAISLVSAD---EAKQLF 356 >gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas] Length = 758 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/334 (35%), Positives = 186/334 (55%), Gaps = 9/334 (2%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPL 76 Y T VQ+ + + +D++ AQTGSGKT AF L + + ++ FS P Sbjct: 330 YEKPTPVQKYSIPIVMAGRDLMACAQTGSGKTAAFLLPVLTGMMKNGISGSSFSEVQEPQ 389 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 AL +APTRELAVQ+ + T + V GG SV + R ++ G HI+VGTPGRL Sbjct: 390 ALVVAPTRELAVQIFMDARKFAHGTMLRAVVLYGGTSVGYQLRQVEQGTHILVGTPGRLI 449 Query: 137 DHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFSATISP 191 D I GKG +++S LK ++LDEAD MLD+GF DI + L + PK +R+ LMFSAT Sbjct: 450 DII-GKGKISLSKLKYLILDEADRMLDMGFGPDIRKLVEELGTPPKTERQTLMFSATFPE 508 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I +A ++ D + + + +D+ V ++ + + +IL G++ +VF Sbjct: 509 EIQKMAGDFLNDYLFLTVGRVGGACTDVTQTVYEVDRQEKRSRLCDILTETGSEKTLVFV 568 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + + L+++ F ++ G+ Q ER AL+ + G+A V IAT VAARG+D+P Sbjct: 569 EQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALRDFKLGKAPVLIATSVAARGLDIP 628 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++ VI+ +L + + +HR GRTGR G G ++ Sbjct: 629 LVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKAI 662 >gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Alteromonadales bacterium TW-7] gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain [Alteromonadales bacterium TW-7] Length = 465 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 182/342 (53%), Gaps = 2/342 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + Q + A+ E+GY T +Q + + +DV+ +AQTG+GKT F L L L Sbjct: 8 LSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERL--ST 65 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + ++ AL +APTRELA+QV +E + V V GGV ++ + + L+ G Sbjct: 66 GPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRKGVD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL D + ++ +VLDEAD MLD+GF DI+ ++ P KR+ LMFS Sbjct: 126 ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LAK D V +++A++N + V + + +++R + + Sbjct: 186 ATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKTALLSHLIRSNDWQQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R K L A+ G SQ R AL + G RV +ATD+ AR Sbjct: 246 VLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATDIVAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ +L V++ +L + E+ +HR GRTGRAG G ++ + Sbjct: 306 GLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFV 347 >gi|254508548|ref|ZP_05120665.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16] gi|219548490|gb|EED25498.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16] Length = 433 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 189/342 (55%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AE 65 PQ I E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL +E Sbjct: 18 PQ-ITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTSE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P + P A+ +APTRELA+Q+ + E L A TG+ A+ GG S ++ L++G Sbjct: 77 HEGRKP-TQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLEDGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 +++GT GR+ D + + N++H++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT+S + LA + + V + E + I + + + ++ Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + AI+F +T+ LA +V L+G++ Q++R L+ G + +ATDV Sbjct: 256 PERAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDVDLLVATDV 315 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 AARG+ +P + V + +L + E+ +HR GRTGRAG G S+ Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357 >gi|149910902|ref|ZP_01899534.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp. PE36] gi|149806056|gb|EDM66039.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp. PE36] Length = 431 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/352 (33%), Positives = 192/352 (54%), Gaps = 13/352 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 N+ Q + +++ GY T +Q + L +D++ AQTG+GKT AF L + L+AE Sbjct: 7 NLNQNLINTVTKLGYETPTPIQAQAIPAILEGRDIMGGAQTGTGKTAAFALPIIHQLMAE 66 Query: 66 NDRFSPASAPLA------LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + A+ P A L + PTREL+ QV + + + + GGVS++ + + Sbjct: 67 Q-LTANATEPTAKKQIRALILTPTRELSQQVHKSFVTYSEDSELTSELVYGGVSINPQVK 125 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 L GA I+V TPGRL D + + L + ++ +V DEAD MLD+GF ++I IL PKK Sbjct: 126 ALVQGADILVATPGRLLDLLDRETLTLEFVEKIVFDEADRMLDMGFMEEIRRILKHLPKK 185 Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 R+ ++FSAT AI L+K+ D + V + + N ++ + V +DR + + L Sbjct: 186 RQTMLFSATFDDAIFKLSKSLLNDPLLVEVDTRNAAAEQVE-QIVYAVDNDRKRELTSYL 244 Query: 240 RYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 G++N ++F T+ K + + + +A+ G+ SQ R L+ ++G+ R Sbjct: 245 --IGSRNWHQVLIFTRTKQGADSLAKEMCKDGIKTIAVHGDKSQGARERGLEDFKNGKVR 302 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATDVAARG+D+ L+ VI+ EL E+ +HR GRTGRAG G + ++ Sbjct: 303 ALVATDVAARGLDIEQLKHVINFELPFKAEDYIHRIGRTGRAGLSGTATSLV 354 >gi|212722850|ref|NP_001131651.1| hypothetical protein LOC100193011 [Zea mays] gi|194692160|gb|ACF80164.1| unknown [Zea mays] Length = 455 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 110/339 (32%), Positives = 186/339 (54%), Gaps = 4/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA G+ T +Q + L+ KD++ AQTGSGKT AF L + LL+ Sbjct: 37 EACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQELLSNR---QAE 93 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + A ++PTRELA+Q+ + E L + G+ +V +GGV ++ + HIVVGTP Sbjct: 94 QSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTP 153 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +K +VLDEAD++L++ F ++ IL PK RR +FSAT++ Sbjct: 154 GRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILSEMPKDRRTFLFSATMTK 213 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + ++ +V ++S+ + V D+D ++++L ++F Sbjct: 214 KVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHVLNERLESMIMIFV 273 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T S +L + +++SG++SQ +R AL + + I TDVA+RG+D+ Sbjct: 274 RTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQ 333 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ N ++ +HR GRT RAGR G +V ++ Q Sbjct: 334 GVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQ 372 >gi|149196524|ref|ZP_01873578.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155] gi|149140204|gb|EDM28603.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155] Length = 412 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/352 (33%), Positives = 198/352 (56%), Gaps = 14/352 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALA---ST 61 N P + A+ + T +Q + P ++E KD+L +QTG+GKT+AF L +T Sbjct: 7 NFPDYLSRAVDNLNFSEATDIQAKAI-PLIQEGKDLLAESQTGTGKTLAFSFPLIERINT 65 Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRER 118 L + + S L L + PTRELA+QV + YA+ + A IGG ++ + Sbjct: 66 LPPKKKKISI----LGLVLVPTRELALQVEKAFTN-YAEFSLRPIKTATLIGGENIDGQI 120 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R L+ G +++ TPGR+ + I + + L+ ++LDEAD+MLDLGF D+++ +L++ PK Sbjct: 121 RKLRMGLDVLIATPGRIIELINLGEVRLVELEMLILDEADKMLDLGFADELKELLEALPK 180 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 KR+ L+FSAT+ + LA+ + AV + I+ + +I+ R + V + R + + Sbjct: 181 KRQNLLFSATLPQKVQQLAEEFLNAAVELRISRDQITGDNIEQRVIEVDANLRRQVLQKL 240 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 + K+ I+F S++ S L + Q G+L+Q ER L+ ++ + Sbjct: 241 FKDEQWKHTIIFVSSKRSAFNLANKLKKAGIQAQDFHGDLTQDERIKVLKRFQNKDFPIL 300 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 IATD+AARGID+ L VI+ +L +P + +HR GRTGRAG+KG+++ F+ P Sbjct: 301 IATDIAARGIDISKLSHVINYDLPRSPMDYVHRIGRTGRAGQKGVAISFINP 352 >gi|145234506|ref|XP_001400624.1| ATP-dependent RNA helicase dbp3 [Aspergillus niger CBS 513.88] gi|134034068|sp|A2QFL3|DBP3_ASPNC RecName: Full=ATP-dependent RNA helicase dbp3 gi|134057571|emb|CAK37981.1| unnamed protein product [Aspergillus niger] Length = 495 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 182/336 (54%), Gaps = 12/336 (3%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 + + T++Q A +DV+ A+TGSGKT+ FGL L + P P A+ Sbjct: 98 FTSPTAIQSATWPFLFSGRDVIGIAETGSGKTLGFGLPCLKNLQDSAKKGKPYK-PTAVM 156 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 I+PTRELA+Q+ ++ + VA GGV +R L+ A IVV TPGRL D Sbjct: 157 ISPTRELAMQIHDQISKFAELVDIKVACIFGGVKKEEQREALKTAA-IVVATPGRLKDLQ 215 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAK 198 +++ +K +VLDEAD MLD GF DI+ I+ P KR+ +MF+AT P + LA Sbjct: 216 NDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTVMFTATWPPVVRDLAA 275 Query: 199 NYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IV 249 + V V I E R ++ I +V +++ +V +L +Y ++ +V Sbjct: 276 TFMTSPVTVTIGGEPSADPRANTRIKQVVEVVKPHEKEQRLVQLLNKYQKGPSSSDKILV 335 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC + R ++L F+V + G+L QQER +L+ + G + V +ATDVAARG+D Sbjct: 336 FCLYKKEAVRVERLLWNKGFKVAGIHGDLGQQERFKSLESFKKGVSTVLVATDVAARGLD 395 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +P ++LVI+ E+ +HR GRTGRAG +G ++ Sbjct: 396 IPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAI 431 >gi|77360375|ref|YP_339950.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas haloplanktis TAC125] gi|76875286|emb|CAI86507.1| ATP-dependent RNA helicase, DEAD box family [Pseudoalteromonas haloplanktis TAC125] Length = 440 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 133/405 (32%), Positives = 208/405 (51%), Gaps = 39/405 (9%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ +G T +Q + L D+ ++TGSGKT+AF L ++ + + Sbjct: 16 LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA QV +L L A T + +GG + + + + L+N VV TPGR Sbjct: 74 PRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKALRNDPQFVVATPGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA- 192 L DH+ + L +S L+ ++ DEAD +LDLGF + ++ I D + + R+ L+FSAT+ A Sbjct: 134 LADHLTKRTLQLSGLELLIFDEADRILDLGFTEQLKMINDLADHRLRQTLLFSATLDHAQ 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251 + L++N K ++ +++ N QHSDI L D A++ + L I+F Sbjct: 194 VDALSRNLLKKPKQIMLSAANEQHSDIKQSLYLADHLDHKEALLEHFLNQDDVGQCIIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TRA SR ++ L F+ L+G+L+Q +R + + ++ I TDVA+RG+DL Sbjct: 254 ATRADTSRLSEALCAKGFKAQPLAGDLAQNKRLDIMDAFSRENFKILITTDVASRGLDLL 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370 + VI+ +L + E +HR GRTGRAG KG ++ ++ P++ W Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGSALSLVGPKD-----------------W- 355 Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQG--------DEKKMVDVL 407 PS AI+ L D L DS+ G EKK V VL Sbjct: 356 --PSYLAIKA-----FLNDELKFDSVDGLKAKFKGIKEKKPVAVL 393 >gi|320583326|gb|EFW97541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pichia angusta DL-1] Length = 533 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/356 (32%), Positives = 190/356 (53%), Gaps = 18/356 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 I +I + L GY T +Q A + L +D++ A+TGSGKT+AF + + +L + Sbjct: 134 QISPLILQQLEALGYTEPTPIQRAAVPNGLTGRDLVGIAETGSGKTLAFLIPSVNYIL-Q 192 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P L + PTRELA+Q+ RE +A G V IGG S L+ G Sbjct: 193 LPRLGRFEGPYVLILVPTRELALQIEREFS-KFASLGFDVISLIGGHSYDEHAEKLERGV 251 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177 +++ TPGRL D + + +++ +V+DEAD M+D+GF +D+ IL+S P Sbjct: 252 EVIIATPGRLVDCLEQQLVSLDRCFFLVMDEADRMIDMGFENDLNKILESLPDGSENPHY 311 Query: 178 -----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-- 230 KR +MF+AT+ P I ++ Y K+ V + + A+ V SD Sbjct: 312 LGSGEPKRTTMMFTATMPPQIEKISAKYLKNPGTVMVGEVGGAVDSVRQEAIQVDDSDEK 371 Query: 231 RDNAIVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 R + +L R + I+F + R + + L + F V + G +Q++R A+Q Sbjct: 372 RLQMLQKVLTRGIYSPPIIIFVNFRKTCEMVAEFLEQLGFNAVTMHGSKTQEQREYAIQQ 431 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +++GR+ + +ATDVA RGID+PD+ LV++ +++ N E+ HR GRTGRAG++G ++ Sbjct: 432 IKEGRSDILVATDVAGRGIDIPDVSLVVNFQMAKNIEDYTHRIGRTGRAGKEGTAI 487 >gi|109899589|ref|YP_662844.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas atlantica T6c] gi|109701870|gb|ABG41790.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica T6c] Length = 412 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/336 (33%), Positives = 185/336 (55%), Gaps = 3/336 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY TS+Q+ ++ + KD+L SA TG+GKT AF L + LL + R P S Sbjct: 14 AVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQFLL-DYPRRHPGS 72 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 + L + PTRELA QV + L T +V V GG++ +R + I+V TPG Sbjct: 73 TRI-LILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDRDTFEKNLDILVATPG 131 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192 RL +HI + + ++ ++LDEAD MLD+GF + I + +++ ++FSAT+ Sbjct: 132 RLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRKQSMLFSATLEGTG 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I+ AK+ D V + AS ++ I + + A++ + H ++A+VF Sbjct: 192 ISRFAKDILNDPVELEAASSRKEQGKIHQWLHIADDAKHKYALLKHILTHQVESAVVFVK 251 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR ++ ++L F V L GE+ Q +R+ ++ R G ++ IATDVAARGID+ Sbjct: 252 TRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKILIATDVAARGIDVES 311 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + VI+ ++ + +HR GRTGRAG KG ++ ++ Sbjct: 312 ISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLV 347 >gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 621 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 194/361 (53%), Gaps = 29/361 (8%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ AL+E G ++QE L L +D++ A+TG+GKT+ FG+ L ++ + Sbjct: 106 PEIV-SALAEVGIERTFAIQELTLPLALAGEDLIGQARTGTGKTLGFGVPLLQRIVPPAE 164 Query: 68 RFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 R PA+ P AL + PTREL VQV ++L G+ V GG + Sbjct: 165 R--PAATAEGEAADRTKDVPQALVVVPTRELCVQVAQDLTDAGRDLGIRVTAIYGGRAYE 222 Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 + L+ G +VVGTPGRL D + L + + +VLDEADEMLDLGF D+E IL Sbjct: 223 PQLNALRKGVDVVVGTPGRLLDLAEQRHLALGRVGVLVLDEADEMLDLGFLPDVERILRM 282 Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRV--------NIASENRQHSDIDYRAVLVA 227 P++R+ ++FSAT+ I L++ + + +I +QH YRA + Sbjct: 283 LPEERQTMLFSATMPGPIIALSRAFLNRPTHIRAEESDQGSIHERTKQHV---YRAHAM- 338 Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287 D+ + +L+ ++F T+ +V R LAE F A+ G+L Q R AL Sbjct: 339 --DKVELLTRVLQAKDRGLTMIFARTKRTVQRVADDLAERGFAAAAVHGDLGQGAREQAL 396 Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 + R G+ V +ATDVAARGID+ D+ VI+ + + + +HR GRTGRAG++G++V + Sbjct: 397 RAFRSGKVDVLVATDVAARGIDVTDVTHVINYQCPEDAKTYVHRIGRTGRAGKEGVAVTL 456 Query: 348 I 348 + Sbjct: 457 V 457 >gi|154299943|ref|XP_001550389.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10] gi|160380638|sp|A6SEH9|DED1_BOTFB RecName: Full=ATP-dependent RNA helicase ded1 gi|150857142|gb|EDN32334.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10] Length = 683 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/337 (33%), Positives = 182/337 (54%), Gaps = 15/337 (4%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------- 74 T VQ+ + + +D++ AQTGSGKT F + S PA+A Sbjct: 210 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPANAAGSFGRTRK 269 Query: 75 --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L +APTREL Q+ E ++ V V GG + + R ++ G ++V TP Sbjct: 270 AYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATP 329 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSAT 188 GRL D I +++ ++K +VLDEAD MLD+GF I I++ + R+ LMFSAT Sbjct: 330 GRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSAT 389 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 I LA+++ KD V +++ +I + V D+ + +++IL HGA + Sbjct: 390 FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTL 449 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + L F ++ G+ +Q+ER AL+M R+GR + +AT VAARG+ Sbjct: 450 IFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGL 509 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+P+++ V++ +L ++ ++ +HR GRTGRAG G+S Sbjct: 510 DIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 546 >gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana] gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana] Length = 456 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/339 (33%), Positives = 185/339 (54%), Gaps = 7/339 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AENDRFS-PA 72 G+ N + +Q L L KDV+ AQTGSGKT AF + + LL +E + P Sbjct: 28 GWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPD 87 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A A ++PTRELA+Q+ + E L A + AV +GG+ ++ L H++V TP Sbjct: 88 PAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATP 147 Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ LK +VLDEAD +L+ F + IL+ P +R +FSAT++ Sbjct: 148 GRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERETFLFSATMTK 207 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + ++ V++ AS+ + + VA +D +V IL +++F Sbjct: 208 KVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFT 267 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T VL F+ + +SG+++Q +R AL + G + + TDVA+RG+D+P Sbjct: 268 RTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIP 327 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q Sbjct: 328 SVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366 >gi|126325503|ref|XP_001378186.1| PREDICTED: similar to helicase like protein 2 [Monodelphis domestica] Length = 829 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/344 (34%), Positives = 188/344 (54%), Gaps = 19/344 (5%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 366 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENG 424 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 425 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 484 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P+K R Sbjct: 485 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPQKGVRHT 544 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V +D+ + ++++L Sbjct: 545 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNAT 604 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 605 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 664 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G++ Sbjct: 665 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 708 >gi|326493772|dbj|BAJ85348.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 414 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 190/355 (53%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 60 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + + +R + + NV + PA Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPA 408 >gi|119480453|ref|XP_001260255.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181] gi|134034069|sp|A1DG51|DBP3_NEOFI RecName: Full=ATP-dependent RNA helicase dbp3 gi|119408409|gb|EAW18358.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181] Length = 503 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 184/336 (54%), Gaps = 11/336 (3%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 + + T +Q A +DV+ A+TGSGKT+AFGL +L + P A+ Sbjct: 105 FSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVI 164 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 I+PTRELA+Q+ +L A + V GGV +R L+ A IVV TPGRL D Sbjct: 165 ISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAA-IVVATPGRLKDLQ 223 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAK 198 +++ +K +VLDEAD MLD GF DI+ I+ S P KR+ +MF+AT P++ LA Sbjct: 224 NDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSMPDSKRQTVMFTATWPPSVRDLAA 283 Query: 199 NYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA---KNAIV 249 + AV V I +++ R ++ I +V +++ +V +L GA +V Sbjct: 284 TFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLNRSQRGAAVCDKVLV 343 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC + R ++L F+V + G+L+Q ER +L+ + G A V +ATDVAARG+D Sbjct: 344 FCLYKKEAVRVERLLRTKNFKVAGIHGDLNQHERFKSLEAFKTGAATVLVATDVAARGLD 403 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +P ++LVI+ E+ +HR GRTGRAG G ++ Sbjct: 404 IPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAI 439 >gi|71281498|ref|YP_266942.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H] gi|71147238|gb|AAZ27711.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H] Length = 428 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 187/341 (54%), Gaps = 7/341 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 PQV+ L G+ TS+Q L L+ D+ AQTG GKT+AF LA+T Sbjct: 18 PQVV-TGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAF---LAATFHHLLQ 73 Query: 68 RFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + +P + P AL +APTRELA+Q+ R+ + TG+ + V GG +R +L+ G Sbjct: 74 KEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELEAGVD 133 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184 I++GT GRL D+++ N+ +++ +VLDEAD M DLGF DI ++ D P +R ++ Sbjct: 134 ILIGTCGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPATERLSML 193 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+S + LA ++ D V + E + +S I + D+ + ++ Sbjct: 194 FSATLSFRVKELAFDHMNDPTSVEVEPEQKTNSRISEELFYPSNEDKMTLLQTLIEEDWP 253 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + AIVF +T+ + L +V L+G++ Q++R L+ DG + +ATDVA Sbjct: 254 EKAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILVATDVA 313 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+ +P + V + +L + ++ +HR GRTGRAG G ++ Sbjct: 314 ARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAI 354 >gi|327268476|ref|XP_003219023.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Anolis carolinensis] Length = 713 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 195/367 (53%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P +++K D++ AQTGSGKT AF L + S + + EN Sbjct: 248 YTRPTPVQKYAI-PIIKDKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGDALRAMKENG 306 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 307 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLERGCH 366 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R+ Sbjct: 367 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKDTMPPKGVRQT 426 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ ++ + + + +I + V V SD+ + ++++L Sbjct: 427 MMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRSFLLDLLDAT 486 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R GR+ + +AT Sbjct: 487 GKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRSGRSPILVAT 546 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 547 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 594 Query: 362 EANVSVV 368 E N+++ Sbjct: 595 ERNINIT 601 >gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1] gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1] Length = 560 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 183/341 (53%), Gaps = 3/341 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ GY N T VQ + L +D++ +A TG+GKT AF L + STL R Sbjct: 68 AVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILSTL-PRGKRGK--R 124 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AP L ++PTRELA Q+ + + KTG V GG + +++ G +++ TPG Sbjct: 125 APRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRRGTDVLIATPG 184 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + +++ +K++VLDEAD MLD+GF + I+D++P R+ L+FSATI +I Sbjct: 185 RLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTLLFSATIDHSI 244 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + D V IA ++ + +A + + +L G+ IVF T Sbjct: 245 QKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGSDRVIVFART 304 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + L + ++ ++ + SQ +R AL R GR + +ATDV ARGID+PD+ Sbjct: 305 KNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDV 364 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 + VI+ +L PE+ +HR GRTGRAG +G +V + + +R Sbjct: 365 DHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRR 405 >gi|293399873|ref|ZP_06644019.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306273|gb|EFE47516.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 477 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 110/352 (31%), Positives = 194/352 (55%), Gaps = 15/352 (4%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL + Y + +QE ++ L+ +DV+V ++TGSGKT +F + + L+ E Sbjct: 12 ILKALEKLHYEQVLPIQEQVIPEILKGRDVIVRSRTGSGKTASFAIPIVQELIWEE---- 67 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P A+ + PTRELA+Q+ + + + A + G + +DL+ AH+VVG Sbjct: 68 --REPQAIILTPTRELALQIKEDFDNIGAYRRIKTVAIFGKQPYKFQIQDLKQRAHVVVG 125 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGR+ DH+ + L H++ V++DEADEML++GF + ++ I + P + +FSAT+ Sbjct: 126 TPGRILDHLERETLKTGHIRYVIIDEADEMLNMGFIESVQSIFNYFPGNKITCLFSATMP 185 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ + K+ + ++ E ++ I + A V + + + +L + I+F Sbjct: 186 QPIQELAEGFMKEPKLITLSEETTVNAAITHYAYEVKEKQKLSFLKQLLCKEQPASCIIF 245 Query: 251 CSTRASVSRFTKVLAEHLFQ----VVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 T+ V K + E L+ V L G + Q++R ++ + G+ R+ +ATDVAAR Sbjct: 246 ARTQEGV----KTICEELYALDMCVDKLHGGMLQEDRIGNIRDFKKGKIRILVATDVAAR 301 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357 GID+ D+ +I+ ++ + E LHR GRTGR G+++ F+ + +R+AE Sbjct: 302 GIDVQDISHIINYDMPNQKETYLHRIGRTGRQSASGVAITFINEYDGERKAE 353 >gi|289663805|ref|ZP_06485386.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 430 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/347 (34%), Positives = 188/347 (54%), Gaps = 11/347 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+ G LT +Q A++ P L +D++ +AQTGSGKT+A+ L L + +P Sbjct: 19 ALARAGVRTLTPIQVAMIPPMLAGRDLIATAQTGSGKTLAYALPLL-----QQRVQAPEQ 73 Query: 74 APLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128 AP L + PTREL QV + L L A + + GG +++ + L+ GA IV Sbjct: 74 APRVLGGLILVPTRELVAQVAQTLLPLAAALPRRLKIVAATGGEAINPQLMALRGGADIV 133 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 + TPGRL D + L ++ + ++LDEAD +LDLGF +++ I P +R+ ++ SAT Sbjct: 134 IATPGRLLDLVAHNALRLAQVSTLLLDEADRLLDLGFGAELDRIFGLLPAQRQSVLVSAT 193 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 PA+ LAK +D +R+ I Q I RA+ V R + ++L H + Sbjct: 194 FPPAMAALAKWRLRDPLRITIEGTPEQAPAITQRAIAVDAGQRTQLLRHLLLEHAWPQLL 253 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF ++R + + + L++ + + L GELSQ R AL+ + +V +ATD+A RGI Sbjct: 254 VFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERALRAFKQAEVQVLVATDLAGRGI 313 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 D+ L V++ +L + + HR GRT RAG G+++ FV + Q+ Sbjct: 314 DIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 360 >gi|330470231|ref|YP_004407974.1| dead/deah box helicase domain-containing protein [Verrucosispora maris AB-18-032] gi|328813202|gb|AEB47374.1| dead/deah box helicase domain protein [Verrucosispora maris AB-18-032] Length = 563 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/348 (35%), Positives = 188/348 (54%), Gaps = 10/348 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EAL+ G ++QE L LR D++ A TG+GKT+ FG+ L + A + S Sbjct: 38 EALAAAGITRAFAIQEYALPIALRGADLIGQAPTGTGKTLGFGVPLLERVFAPGE-GSGD 96 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P AL + PTREL +QV +++ GV V GGV+ + L+ G I+VGTP Sbjct: 97 GLPQALVVVPTRELGIQVAKDIAAAGRTRGVRVLPIYGGVAYEPQVEALRKGVEILVGTP 156 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + K L ++ ++A+VLDEAD MLDLGF DD+E IL P+ R+ ++FSAT+ Sbjct: 157 GRLLDLAKQKHLRLNGIRALVLDEADRMLDLGFLDDVERILAMLPEDRQTMLFSATMPDP 216 Query: 193 ITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 I TL++ + + + ++ + Q + YR + ++ + IL+ Sbjct: 217 IVTLSRRFLRHPITIHAGHTAETGPSPQTEQLVYRTHSM---NKVEIVARILQAESRGLT 273 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 ++F T+ + R + L F V A+ G+L Q R AL+ R G+ +ATDVAARG Sbjct: 274 MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVATDVAARG 333 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354 ID+ + VI+ + + + HR GRTGRAG G++V FV +M R Sbjct: 334 IDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPR 381 >gi|297826827|ref|XP_002881296.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp. lyrata] gi|297327135|gb|EFH57555.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp. lyrata] Length = 731 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/356 (33%), Positives = 182/356 (51%), Gaps = 27/356 (7%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+ GY + +Q A + L+++DV+ A+TGSGKT AF L + LA R P Sbjct: 324 KAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM----LAYISRLPPM 379 Query: 73 S------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 S P A+ +APTRELA Q+ E G V +GG S+ + + G Sbjct: 380 SEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCE 439 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------- 179 IV+ TPGRL D + + ++ VVLDEAD M+D+GF + +LD+ P Sbjct: 440 IVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENE 499 Query: 180 ----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229 R MFSAT+ P + LA+ Y ++ V V I + + I +++ S Sbjct: 500 EEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKES 559 Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 ++ + +L G K AIVF +T+ + K L + ++V L G SQ++R +L+ Sbjct: 560 EKFFRLQKLLDELGDKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEG 619 Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R R V +ATDV RGID+PD+ VI+ ++ + E HR GRTGRAG+ G++ Sbjct: 620 FRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVAT 675 >gi|237808150|ref|YP_002892590.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis DSM 9187] gi|237500411|gb|ACQ93004.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187] Length = 468 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 192/341 (56%), Gaps = 5/341 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 + EA++ Y +T VQ + L +D+ V+++TGSGKT+A+ L L LL R Sbjct: 12 LKEAMAHLDYTEMTEVQAQTIPYALIGRDLAVASKTGSGKTLAYLLPLMHRLL--TSRAL 69 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P AL +APTRELA QV +L +L A T V ++ +GG + + + + L+ I+V Sbjct: 70 STRGPRALILAPTRELAKQVYAQLRFLVAGTQVHCSLVLGGENFNDQIKALRKTPEILVA 129 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATI 189 TPGRL +H+ + ++ +VLDEAD MLDLGF D ++ I ++ + R+ +FSAT+ Sbjct: 130 TPGRLLNHLTARSFLFDGVEILVLDEADRMLDLGFADALKAIHSAASHRLRQTWLFSATL 189 Query: 190 S-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247 + ++ L+ K ++I + H+DI+ L D A++ ++L + A Sbjct: 190 NNQSVEMLSGYILKAPQSISIGEMHAIHADINEVFHLCDHLDHKQALLKHLLSQPDYQQA 249 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF +TR R K +E +ALSG++ Q +R+ + G A+V TDVAARG Sbjct: 250 IVFLATREDTERLAKQYSELNIPALALSGDMKQAQRNQVIDQFSRGHAKVLFTTDVAARG 309 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +DL + LV++ ++ PE +HR GRTGRAG +G +V +I Sbjct: 310 LDLLHVSLVVNFDMPKLPEEYIHRIGRTGRAGNQGNAVSLI 350 >gi|145353098|ref|XP_001420866.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581101|gb|ABO99159.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 404 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/333 (33%), Positives = 179/333 (53%), Gaps = 7/333 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 L G+ +++Q+ + P + +DV+ AQ+G+GKT LAL L + Sbjct: 45 GLYSYGFEKPSAIQQRAVVPIISGRDVIAQAQSGTGKTSMISLALCQMLDTTSREVQ--- 101 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 L ++PTRELAVQ + L V V CIGG S+ + R L G HIV GTPG Sbjct: 102 ---GLVLSPTRELAVQTEKTALSLGNFMNVQVHACIGGRSIGDDIRKLDYGCHIVSGTPG 158 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+ D I+ + L +K +VLDEADEML+ GF++ I + P + ++++ SAT+ + Sbjct: 159 RVFDMIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPNEV 218 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCS 252 + + D +R+ + + I V V + + + + ++ A++FC+ Sbjct: 219 LEMTSKFMTDPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCN 278 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ V T+ + ++ F V A+ G++ Q+ER + R G RV I TDV ARGID+ Sbjct: 279 TKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVLITTDVWARGIDVQQ 338 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + LVI+ +L N EN +HR GR+GR GRKG+++ Sbjct: 339 VSLVINYDLPGNRENYIHRIGRSGRYGRKGVAI 371 >gi|113969711|ref|YP_733504.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp. MR-4] gi|113884395|gb|ABI38447.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 427 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/377 (31%), Positives = 193/377 (51%), Gaps = 4/377 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+E Y T +Q A + L +DVL A TGSGKT AF + L L A Sbjct: 24 LTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAEKSAGQ 83 Query: 75 PLALAIAPTRELAVQVGRE-LEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV L + G + + GGVSV+ + + L+ GA ++V TP Sbjct: 84 VRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATP 143 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D + L ++ + A+VLDEAD ML LGF D++ +L++ P K++ L++SAT Sbjct: 144 GRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPAKKQTLLYSATFPEE 203 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 + L + ++ SE Q S I+ R + V + + ++++ H A++F S Sbjct: 204 VRALTAKLLHQPLEYHLQSE--QESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVS 261 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 + + + + L++ G+ +Q R+ L + G V IATD+AARGID+ Sbjct: 262 AKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGDISVLIATDIAARGIDIDK 321 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 L +VI+ +L +P + +HR GR+GRAG G++V +I + ++ + + E Sbjct: 322 LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLEREQV 381 Query: 373 PSVEAIRERDAQRILQD 389 P EA E + + Q+ Sbjct: 382 PGFEANAEMPLEVLAQE 398 >gi|149917594|ref|ZP_01906091.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica SIR-1] gi|149821657|gb|EDM81055.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica SIR-1] Length = 437 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 194/357 (54%), Gaps = 18/357 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ E GY T +Q + + +D+L AQTG+GKT AF L + L A+ P Sbjct: 15 AVREAGYETPTPIQTQAIPSAIAGRDILGCAQTGTGKTAAFSLPILQRLDAD-----PPD 69 Query: 74 APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 P AL ++PTRELA Q+G + + V GGV + +L+ G ++V T Sbjct: 70 EPRIRALIVSPTRELAAQIGANIGSYAKHLELWHTVIFGGVKDKPQIAELRRGVDVLVAT 129 Query: 132 PGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 PGRL D + G+G +++ ++ VLDEAD+MLD+GF DI I+ + P KR+ L FSAT+ Sbjct: 130 PGRLLD-LMGRGHIDLKRVEVFVLDEADQMLDMGFLPDIRRIVKALPSKRQTLFFSATMP 188 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-GAKNAIV 249 AI LA D V V +A + + +D+D R V ++ +V++LR ++V Sbjct: 189 SAIKELAATLLDDPVEVAVARVS-EPADVDQRLYFVDKGNKRKLLVDLLRADPSVSRSLV 247 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R K L+ A+ G SQ R+ AL+ + G RV +ATD+AARG+D Sbjct: 248 FSRTKHGANRIAKHLSAAGVSSAAIHGNKSQNARTRALEAFKGGELRVLVATDIAARGLD 307 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFR 361 + + VI+ +L + PE +HR GRT RAG G+++ +++ RA ERL R Sbjct: 308 ISKVSHVINFDLPNVPETYIHRIGRTARAGNSGIALSFC--DVEERAYLVDIERLLR 362 >gi|332139978|ref|YP_004425716.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep ecotype'] gi|327550000|gb|AEA96718.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep ecotype'] Length = 429 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 186/337 (55%), Gaps = 4/337 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFS 70 +AL+ + + T +Q L P L D+ AQTG+GKT+AF +A LL AEN S Sbjct: 21 DALAAANFSHCTPIQALALPPLLEGHDIAGQAQTGTGKTIAFLVATFHYLLSKAENADNS 80 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 ++ P A+ +APTRELAVQ+ + + L TG+ + + GG +R L+ G I++G Sbjct: 81 KSNGPRAIIMAPTRELAVQIYNDAKLLSEHTGLSLGLIYGGEGYQSQRETLEEGVDIIIG 140 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSAT 188 T GR+ D+ + ++ +++ VLDEAD M DLGF DI F+ P +R ++FSAT Sbjct: 141 TTGRILDYYKQNVFSLKNIQVAVLDEADRMFDLGFIKDIRFLFRRMPPAGERLSMLFSAT 200 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 +S + LA + + V +A E + + + D+ ++ +L + AI Sbjct: 201 LSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSDDDKMLLLLTLLEEEWPEKAI 260 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF +T+ S + T L +V LSG++ Q++R L+ G+ V +ATDVAARG+ Sbjct: 261 VFANTKHSCEKVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGKLDVLVATDVAARGL 320 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + + V + +L + E+ +HR GRTGRAG+ G+++ Sbjct: 321 HIDAVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAI 357 >gi|238023960|ref|YP_002908192.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1] gi|237878625|gb|ACR30957.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1] Length = 461 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 180/334 (53%), Gaps = 1/334 (0%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L E Y T VQ + L KDVL +AQTG+GKT F L L L+ + S A Sbjct: 16 LRELNYAEPTPVQARAIPAVLGGKDVLAAAQTGTGKTAGFALPLLQRLVQQGPAVSSNRA 75 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 + L + PTRELA QV + + + GGVS++ + L+ G ++V TPGR Sbjct: 76 RV-LVLVPTRELAEQVLQSFADYGCGLELRMLAAYGGVSINPQMMKLRKGVDVLVATPGR 134 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D R + ++ +VLDEAD MLDLGF +++ + + P +R+ L+FSAT I Sbjct: 135 LLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELDAVFAALPTRRQTLLFSATFPDEIR 194 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 +A + V++++++ N S + V V ++ +++L HG ++A+VF TR Sbjct: 195 AMAAKRLHEPVQISVSAPNATASRVRQWVVTVDKRNKPELFMHLLAEHGWQHALVFARTR 254 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 A V L V + G+ Q R AL+ + G R+ +ATDVAARG+D+ DL Sbjct: 255 AGVDYLAARLEAAGHAVDTIHGDKPQPARLRALERFKRGEVRMLVATDVAARGLDIDDLP 314 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 LVI+ +L ++ +HR GRTGRAG G++V ++ Sbjct: 315 LVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348 >gi|327268480|ref|XP_003219025.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 3 [Anolis carolinensis] Length = 709 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 195/367 (53%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P +++K D++ AQTGSGKT AF L + S + + EN Sbjct: 244 YTRPTPVQKYAI-PIIKDKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGDALRAMKENG 302 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 303 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLERGCH 362 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R+ Sbjct: 363 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKDTMPPKGVRQT 422 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ ++ + + + +I + V V SD+ + ++++L Sbjct: 423 MMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRSFLLDLLDAT 482 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R GR+ + +AT Sbjct: 483 GKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRSGRSPILVAT 542 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 543 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 590 Query: 362 EANVSVV 368 E N+++ Sbjct: 591 ERNINIT 597 >gi|124267275|ref|YP_001021279.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum PM1] gi|124260050|gb|ABM95044.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum PM1] Length = 453 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 127/372 (34%), Positives = 199/372 (53%), Gaps = 14/372 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSP 71 +A+ + GY T +Q+ + + D+L AQTG+GKT F L + L+A + + Sbjct: 14 QAIVDAGYETPTPIQKQAIPAVMLGGDLLAGAQTGTGKTAGFVLPMLHRLMARPAVKDAR 73 Query: 72 ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 +P+ AL + PTRELA QV + + V GGV + + L+ G I+V Sbjct: 74 GKSPVRALILTPTRELAAQVEESVRIYGKHAKLSSMVMFGGVGMQPQIDRLKRGVDILVA 133 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL DH + + L++SH++ VLDEAD MLD+GF DI+ +L PK+++ L+FSAT S Sbjct: 134 TPGRLLDHHQQRTLDLSHVEIFVLDEADRMLDMGFIHDIKKVLAIVPKQKQSLLFSATFS 193 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRYHGAKNA 247 I TLA + +A R++S ++ A + DRD + ++++ Sbjct: 194 DEIKTLADRLLNSPQVIEVA---RRNSTVETIAQKIHPVDRDKKKELLAHLIKSQDWHQV 250 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VFC + +R T+ L + +A+ G SQ R+ AL + G +V +ATD+AARG Sbjct: 251 LVFCRMKHGANRLTEYLNDQRITAMAIHGNKSQTARTKALADFKSGALQVLVATDIAARG 310 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA- 363 ID+ L V++ EL + E+ +HR GRTGRAG G +V ++ R E+L + + Sbjct: 311 IDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGALGEAVSLVCVDEDGFLRDIEKLIKRSI 370 Query: 364 --NVSVVWEPAP 373 V +EP P Sbjct: 371 PREVVPGFEPDP 382 >gi|15218574|ref|NP_177417.1| eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] gi|75333652|sp|Q9CAI7|IF4A3_ARATH RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3; AltName: Full=ATP-dependent RNA helicase eIF4A-3; AltName: Full=DEAD-box ATP-dependent RNA helicase 23 gi|12323781|gb|AAG51861.1|AC010926_24 putative Eukaryotic initiation factor 4A; 30924-32477 [Arabidopsis thaliana] gi|16974629|gb|AAL31217.1| At1g72730/F28P22_8 [Arabidopsis thaliana] gi|21593752|gb|AAM65719.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana] gi|22655476|gb|AAM98330.1| At1g72730/F28P22_8 [Arabidopsis thaliana] gi|332197244|gb|AEE35365.1| translation initiation factor 4A-3 [Arabidopsis thaliana] Length = 414 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 188/357 (52%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D S AL Sbjct: 60 GFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-ISLVQCQ-AL 113 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV C+GG SV ++R LQ+G H+VVGTPGR+ D Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDL 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L +K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + +R + R NV V E PS Sbjct: 354 NFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVV--EELPS 408 >gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis] Length = 745 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/334 (36%), Positives = 183/334 (54%), Gaps = 9/334 (2%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPL 76 Y T VQ+ + + +D++ AQTGSGKT AF L + + ++ FS P Sbjct: 318 YDRPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLTGMMNNGLTGSSFSVVQEPQ 377 Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136 AL +APTRELAVQ+ + + T + V GG S+ + R+++ GAHIVVGTPGRL Sbjct: 378 ALVVAPTRELAVQIFTDAKRFTHGTMLRPVVLYGGTSLGHQLRNVEQGAHIVVGTPGRLI 437 Query: 137 DHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFSATISP 191 D I GKG +++ LK ++LDEAD MLD+GF +I+ I L + PK +R+ LMFSAT Sbjct: 438 DVI-GKGKVSLEKLKYLILDEADRMLDMGFGPEIKKIVHELGAPPKEQRQTLMFSATFPE 496 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I LA + D + + + +D+ V + + +IL G +VF Sbjct: 497 EIQRLAAEFLNDYLFLTVGRVGGACTDVAQYVHEVPRDQKRQKLCDILSESGTDKTLVFV 556 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + + L++ F ++ G+ QQER AL+ + GRA + +AT VAARG+D+P Sbjct: 557 EQKRNADFLATYLSQSGFPTTSIHGDRLQQEREEALRDFKTGRAPILVATSVAARGLDIP 616 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ++ VI+ +L + + +HR GRTGR G G S Sbjct: 617 LVKHVINYDLPQSIDEYVHRIGRTGRCGNVGKST 650 >gi|221480806|gb|EEE19233.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1] Length = 657 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/355 (31%), Positives = 184/355 (51%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 PQ I + L ERG T +Q + L+ +D++ A TGSGKT+ F L + L Sbjct: 215 FPQPILKGLQERGISYPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIMGALESE 274 Query: 67 DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-----TGVVVAVCI-GGVSVHRER 118 R + P P L + P+RELA Q + K + VCI GG S + Sbjct: 275 IRSPYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEDGGYPALRCVCIIGGCSAVEQA 334 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 ++++ G H +V TPGRL D + + L + + + DEAD M+D+GF +++ +LDS Sbjct: 335 KEVRQGVHCIVATPGRLTDMLNKRRLALQQCEYLCFDEADRMVDMGFEEEVRNVLDSFGH 394 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AK+ D + VN+ + D+ V ++ +++ Sbjct: 395 QRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQENKLPYLLHC 454 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ A ++FC + V + L A+ G L+Q+ERS A++ R+GR V Sbjct: 455 LQ-KTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAFREGRKDVL 513 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + TDVA++G+D P ++ VI+ ++ EN +HR GRTGR GR G++ + +N + Sbjct: 514 VGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVNKNQE 568 >gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 479 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 175/337 (51%), Gaps = 9/337 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + L+++G+ T +Q + L +D++ AQTG+GKT AF L + L+ P Sbjct: 15 DTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPILHALITH-----PT 69 Query: 73 SAPLA----LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AP L ++PTRELA Q+ L + VAV GGVS + + LQ G I+ Sbjct: 70 PAPRGGARVLVLSPTRELASQIAETFRTLGQSHALSVAVVFGGVSPGAQIKALQRGLDIL 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL DHI ++ + VLDE D+MLDLGF I I+ + P KR+ L FSAT Sbjct: 130 VATPGRLVDHIDSGVAHLGKTEFFVLDEVDQMLDLGFVKPIRRIVGTLPAKRQSLFFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA + KD V V++ + + + V V + + ++ + I Sbjct: 190 MPGEIRKLATDLLKDPVTVSVTPVAKTADRVRQQVVFVETHRKRDILIELFGDAMMTRTI 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ + T+ L + A+ G SQ +R +L R G R +ATD+AARGI Sbjct: 250 VFTRTKRGADKVTQHLEKAGIPAFAIHGNKSQSQRERSLLAFRSGHVRALVATDIAARGI 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ + V++ EL PE+ +HR GRT RAG +G+++ Sbjct: 310 DIDGVTHVVNYELPEVPESYVHRIGRTARAGAEGIAI 346 >gi|307324569|ref|ZP_07603776.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger Tu 4113] gi|306889813|gb|EFN20792.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger Tu 4113] Length = 463 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/361 (32%), Positives = 196/361 (54%), Gaps = 5/361 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P+ + L+++G +Q A L L +DVL +TGSGKT+AFGLAL + + Sbjct: 52 DMPKELITELTQQGVTVPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 111 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P PLAL + PTRELA QV L + G+ A +GG+S++R+ L+NG+ Sbjct: 112 --RAEPRR-PLALVLVPTRELAQQVTEALTPYARRLGLRAATVVGGMSINRQADALRNGS 168 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +V+ TPGRL D I + ++ VLDEAD+M D+GF + +L P + L+F Sbjct: 169 EVVIATPGRLYDLIERGDCRLDQVRTTVLDEADQMADMGFLPQVTRLLRQVPADGQRLLF 228 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ I+ L + + D ++ + +++ + +A +D+ + + + G Sbjct: 229 SATLDHDISKLTRQFLDDPAVHSVDPSAGAVTTMEHHVLHIADTDKRSVVTRVAARDG-- 286 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ +V R T+ L + AL G SQ +R+ L + G +AT+VAA Sbjct: 287 RVLLFLDTKRAVDRLTRHLLTSGVRAAALHGGKSQPQRTRTLDQFKSGHVTALVATNVAA 346 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + DL+LV++ + ++ ++ LHR GRT RAG G + ++ + +R RL +A + Sbjct: 347 RGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGGSGSVITLVTPDQRREMGRLMADAGI 406 Query: 366 S 366 + Sbjct: 407 T 407 >gi|304395765|ref|ZP_07377648.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] gi|304357059|gb|EFM21423.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] Length = 457 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 190/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q + L +D+L SAQTG+GKT F L L L A Sbjct: 15 AVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQKLSATATPIRGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA QVG + + V GGVS++ + L+ G I+V TPG Sbjct: 75 PVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMVKLRGGVDILVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + +++S ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLAQQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDEI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + +A N + + V + + ++ + +VF T Sbjct: 195 KGLAEKLLTNPEMIEVARRNTASEQVAQQVAFVDKKRKRELLSQLIGEGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + A+ G SQ R+ AL + G RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLGKDGISAAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV- 368 V++ EL + E+ +HR GRTGRA G++ V V + R ERL RE V Sbjct: 315 PHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVE 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|281347447|gb|EFB23031.1| hypothetical protein PANDA_001323 [Ailuropoda melanoleuca] Length = 613 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/367 (32%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 151 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 209 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 210 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 269 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 270 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 329 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 330 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 389 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 390 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 449 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 V+ARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 450 AVSARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 497 Query: 362 EANVSVV 368 E N+++ Sbjct: 498 ERNINIT 504 >gi|327268478|ref|XP_003219024.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Anolis carolinensis] Length = 706 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 195/367 (53%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P +++K D++ AQTGSGKT AF L + S + + EN Sbjct: 241 YTRPTPVQKYAI-PIIKDKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGDALRAMKENG 299 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 300 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLERGCH 359 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R+ Sbjct: 360 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKDTMPPKGVRQT 419 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ ++ + + + +I + V V SD+ + ++++L Sbjct: 420 MMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRSFLLDLLDAT 479 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R GR+ + +AT Sbjct: 480 GKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRSGRSPILVAT 539 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 540 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 587 Query: 362 EANVSVV 368 E N+++ Sbjct: 588 ERNINIT 594 >gi|149189303|ref|ZP_01867589.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1] gi|148836862|gb|EDL53813.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1] Length = 431 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 186/338 (55%), Gaps = 7/338 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +AL+E GY LT VQ+ + R D+L AQTG+GKT AF L + ++ + + Sbjct: 12 IVQALTECGYEKLTPVQQQAIPHARRGHDILAHAQTGTGKTAAFSLPIIQQIV-DTPKAR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 A AL +APTREL Q+ +E V VA GG + + R L+ G I+V Sbjct: 71 TRGAVRALILAPTRELVDQIANNIESYTQYVDVSVAAVFGGAKMSSQERKLEAGVDILVA 130 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL +H+ + +++L+ +V DEAD MLD+GF I I+ S + + ++FSAT S Sbjct: 131 TPGRLIEHLELGNVKLANLEFLVFDEADRMLDMGFISAIRTIMSSVNSQPQTMLFSATSS 190 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---A 247 P + LA++ + R+ + +EN S D A +V D D + + G KN Sbjct: 191 PQMNALAQDLLRKPKRIIVNAEN---STADTVAHVVYPVDEDRKLELLSELIGRKNWQQV 247 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF + + + + K L + V G+ +Q R AL+ + G+ARV +AT+VAARG Sbjct: 248 LVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSSRRRALEEFKTGKARVMVATEVAARG 307 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +D+ L V++ ++ E+ +HR GRTGRAG++G +V Sbjct: 308 LDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAV 345 >gi|225435708|ref|XP_002283489.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147854540|emb|CAN78578.1| hypothetical protein VITISV_013679 [Vitis vinifera] Length = 612 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/380 (32%), Positives = 201/380 (52%), Gaps = 23/380 (6%) Query: 11 IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65 +GEAL++ YV T VQ + L +D++ AQTGSGKT AF + S ++ + Sbjct: 160 LGEALNQNIKRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMKGQ 219 Query: 66 NDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 + P A PLAL ++PTREL+ Q+ E + +TGV V V GG + ++ RDL Sbjct: 220 ASQRPPRGARTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPISQQLRDL 279 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK 178 + G I+V TPGRL D + +++ ++ + LDEAD MLD+GF I I +D P+ Sbjct: 280 ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQ 339 Query: 179 K-RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ ++FSAT I LA ++ + V + + I R V +D+ + +++ Sbjct: 340 GVRQTMLFSATFPKEIQKLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVHDTDKRSHLMD 399 Query: 238 ILR------YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 +L HG + +VF T+ L + F + G+ +QQER AL+ Sbjct: 400 LLHAQRANGVHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSF 459 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + G + +ATDVAARG+D+P + V++ +L ++ ++ +HR GRTGRAG+ G++ Sbjct: 460 KSGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFND 519 Query: 351 N---MQRRAERLFREANVSV 367 N + + L +EAN V Sbjct: 520 NNSSLAKALSELMQEANQEV 539 >gi|332113313|gb|AEE02033.1| X-linked DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Sus scrofa] Length = 661 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 187/344 (54%), Gaps = 19/344 (5%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G++ Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 542 >gi|255642429|gb|ACU21478.1| unknown [Glycine max] Length = 413 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 189/357 (52%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 59 GFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R LQ G H VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L +K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 173 LRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 293 DWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + + R + + NV+V E PS Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTADDSRMLSDIQKFYNVTV--EELPS 407 >gi|51712358|ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus] gi|82902181|ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus] Length = 411 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + ++ +DV+ +Q+G+GKT F +++ L + AL Sbjct: 57 GFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISMLQCLDIQ------VRETQAL 110 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELAVQ+ + L L V CIGG +V + R L G H+V GTPGR+ D Sbjct: 111 ILAPTRELAVQIQKGLLTLGDYMNVQCHACIGGTNVDEDIRKLDYGQHVVAGTPGRVFDM 170 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++++ SAT+ I + Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D + + + + I V V + + + + ++ A++FC+T+ V Sbjct: 231 KFMTDPICILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G + Q+ER + ++ R G +RV I+TD+ ARG+D+P + L+I Sbjct: 291 DWLTEKMREANFTVSSMHGNMPQKERESIMKEFRSGASRVLISTDIWARGLDVPQVSLII 350 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378 >gi|169769538|ref|XP_001819239.1| ATP-dependent RNA helicase dbp3 [Aspergillus oryzae RIB40] gi|91206543|sp|Q2UMH8|DBP3_ASPOR RecName: Full=ATP-dependent RNA helicase dbp3 gi|83767097|dbj|BAE57237.1| unnamed protein product [Aspergillus oryzae] Length = 498 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/332 (36%), Positives = 180/332 (54%), Gaps = 11/332 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 TS+Q A +DV+ A+TGSGKT+AFGL + PLA+ I+PT Sbjct: 104 TSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPT 163 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA+Q+ +L GV VA GGV +R L+ A +VV TPGRL D Sbjct: 164 RELAMQIYDQLLKFSGSVGVRVACVFGGVRKEEQREALKT-AGVVVATPGRLKDLQNDGS 222 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAKNYQK 202 +++ +K +VLDEAD MLD GF DI+ I+ P KR+ +MF+AT P++ LA + Sbjct: 223 VDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTIMFTATWPPSVRDLASTFMS 282 Query: 203 DAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAIVFCST 253 V V I +++ R ++ I +V ++++ +V +L + + FC Sbjct: 283 SPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKVLAFCLY 342 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + R ++L F+V + G+LSQQER +L + G A V +ATDVAARG+D+P + Sbjct: 343 KKEAMRIERLLRTKGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSV 402 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + VI+ E+ +HR GRTGRAG +G +V Sbjct: 403 KQVINVTFPLTVEDYVHRIGRTGRAGAEGHAV 434 >gi|33603341|ref|NP_890901.1| ATP-dependent RNA helicase DbpA [Bordetella bronchiseptica RB50] gi|33577465|emb|CAE34730.1| probable ATP-dependent RNA helicase [Bordetella bronchiseptica RB50] Length = 462 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 130/389 (33%), Positives = 206/389 (52%), Gaps = 22/389 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +T +Q L L +D++ A+TGSGKT AFGL + L + +R AP AL Sbjct: 23 GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNL--DVNRL----APQAL 76 Query: 79 AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV +EL L V V GG + + L G H+VVGTPGR+ D Sbjct: 77 VLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQD 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+ L++S L +VLDEAD M+D+GF DDI I P +R+ L+FSAT I L+ Sbjct: 137 HLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLS 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + ++ + + +++ S I+ + R +A+ +L + + + FC+T+ Sbjct: 197 ARFLRNPAEIKVEAQH-DASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLAFCNTKIRS 255 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + L AL+G+L Q+ER L + V +ATDVAARG+D+ +L VI Sbjct: 256 HDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP--- 373 + +++ + E +HR GR+GR +KG+++ P+ M R AN+ ++ AP Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEM--------RWANLIEQYQGAPLKW 367 Query: 374 -SVEAIRERDAQRILQDPLFLDSIQGDEK 401 + ++R + + R L+ P+ IQG +K Sbjct: 368 ADLGSLRPK-SDRPLRAPMITLCIQGGKK 395 >gi|326502382|dbj|BAJ95254.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 412 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 108/335 (32%), Positives = 184/335 (54%), Gaps = 11/335 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 + + G+ +++Q+ + P + +DV+ AQ+G+GKT L++ + Sbjct: 53 GIYDYGFEKPSAIQQRAVIPIITGRDVIAQAQSGTGKTSMISLSVCQVIETNVHEVQ--- 109 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL ++PTRELA Q R ++ + + V V C+GG S+ + R L++G H+V GTPG Sbjct: 110 ---ALILSPTRELATQTERVMQAVGSFMSVSVHACVGGKSIGEDIRKLESGVHVVSGTPG 166 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 R+CD I+ + L +K +VLDEADEML GF+D I + P + ++++ SAT+ I Sbjct: 167 RVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHDI 226 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVF 250 + + D VR+ + + I + VA+ + + + ++ A++F Sbjct: 227 LEITSKFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIF 284 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C+T+ V T+ + + F V A+ G++ Q+ER + R G RV I TDV ARG+D+ Sbjct: 285 CNTKRKVDWLTERMRTNNFTVSAMHGDMPQKERDAIMNEFRGGTTRVLITTDVWARGLDV 344 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 + LVI+ +L +N E +HR GR+GR GRKG+++ Sbjct: 345 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 379 >gi|170093371|ref|XP_001877907.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647766|gb|EDR12010.1| predicted protein [Laccaria bicolor S238N-H82] Length = 441 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 192/343 (55%), Gaps = 13/343 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL E + T +Q + + +D++ A TGSGKT+AF + + L + Sbjct: 17 QALEELKHTTPTEIQTGCIPQAIAGRDIIGIAPTGSGKTLAFVIPILHRLWDNPQGY--- 73 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS--VHRERRDLQNGAHIVVG 130 A ++PTRELA Q+ + E L A GV V +GG V + R L HI+V Sbjct: 74 ---FACVLSPTRELAYQISAQFEALGAAMGVQSVVIVGGDDDRVQQAVR-LAQKPHIIVA 129 Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL DH++ KG ++ LK +VLDEAD +LDL F+ +I I+ S PK+R +FSAT+ Sbjct: 130 TPGRLHDHLKSTKGFSLRSLKHLVLDEADRLLDLDFQREITEIMQSIPKERCTYLFSATM 189 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 + ++ L + D VRV+ AS R S + +L L +++ +V ++ Sbjct: 190 TANVSKLQRASLSDPVRVD-ASLFRYTTVSTLVQHYLLCPLVEKEVTLVYLINSLVQNLI 248 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 IVF T A R + +L F V L GEL+Q +R A + G++++ +ATDVA+RG Sbjct: 249 IVFVRTVADAKRLSIILRSLGFDAVPLHGELTQSQRLGAFTRFKSGKSKILVATDVASRG 308 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +D+P++++VI+ + ++ ++ +HR GRT RAGR G S+ ++ Q Sbjct: 309 LDVPNVDVVINYDTPTHSKDYIHRVGRTARAGRAGKSILMVTQ 351 >gi|255565933|ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223536802|gb|EEF38442.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] Length = 564 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/357 (33%), Positives = 190/357 (53%), Gaps = 19/357 (5%) Query: 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61 FE+ + Q I + ++ GY T +Q + L +D+L A+TGSGKT AF + + Sbjct: 123 FEDMCLNQNIMKDIAYHGYTRPTPIQVQAMTVSLSGRDLLACAETGSGKTAAFTIPMIQH 182 Query: 62 LLAENDRFSP---ASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRE 117 LA+ SP PLAL +APTRELA Q+ +E++ + A+ +GG ++ + Sbjct: 183 CLAQ----SPIRRGDGPLALVLAPTRELAQQIEKEVKCFSRSLDSFRTAIVVGGTNIADQ 238 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 R +L+ G I+V TPGR DH++ ++S + +VLDEAD MLD+GF I +L + P Sbjct: 239 RSELRAGVDIMVATPGRFIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVLHNLP 298 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 ++ + L+FSAT+ I TLA+ Y V+V + + +++ V+ S++ + ++ Sbjct: 299 ERHQTLLFSATMPEEIETLAQEYLTTPVQVKVGKVSGLTANVSQVLKKVSESEKIDCLLG 358 Query: 238 ILRY---------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 +L H +VF +A + L + VAL G SQ ER AL Sbjct: 359 LLVEDASQAERADHPFPLTVVFVDRKARCDEVAEALVAQGLRAVALHGGRSQNEREAALH 418 Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 R G + +ATDVA+RG+D+ + VI+ +L E+ +HR GRTGRAG G + Sbjct: 419 DFRSGSTDILVATDVASRGLDVTGVTHVINLDLPKTMEDYVHRVGRTGRAGSAGQAT 475 >gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii] Length = 635 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/421 (29%), Positives = 210/421 (49%), Gaps = 35/421 (8%) Query: 2 KIFENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 ++F +IPQ+ I E L +G +T +Q P D++ ++TGSGKT+AF L L Sbjct: 107 ELFSSIPQINQKIVEFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTIAFALPL 166 Query: 59 ASTL-----------------------LAE--NDRFSPASAPLALAIAPTRELAVQVGRE 93 L L+E N + P L + PTREL+ QV Sbjct: 167 VEKLYKNIESQKKIIKNKSNEINSIQHLSEEGNKNDNMDKDPYILVLEPTRELSKQVETT 226 Query: 94 LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153 + + + GG S + L+ G I+ GTPGR+ DHI K L++ ++K VV Sbjct: 227 FKEISQFYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVV 286 Query: 154 LDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212 LDEADEML+LGF DIE IL + K ++L++SAT I ++ Y K+ + +++ + Sbjct: 287 LDEADEMLNLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVINT 346 Query: 213 -NRQHSDIDYRAVLVALSDRDNAI----VNILRYHGAKNAIVFCSTRASVSRFTKVLAEH 267 N+ I + A+ ++ A+ + +++ +G + I+F T+ + + Sbjct: 347 INKTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQ-VIIFTRTKLEADILASEGSFN 405 Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327 L G ++Q R + +Q R+G +V IATD+AARG+D+ +++L+I + P Sbjct: 406 YLNFSVLHGNIAQSTREHTMQRFRNGMFQVLIATDIAARGLDISNVDLIIQCYPPTYPAI 465 Query: 328 LLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387 +HRSGRTGRA +KG+S+ + + ++ + + + E PS E + ++ IL Sbjct: 466 YIHRSGRTGRANKKGISIVLFSNEDKNDVIKIEKNCGIKFLTESLPSNEQVFHSVSKIIL 525 Query: 388 Q 388 + Sbjct: 526 K 526 >gi|311276166|ref|XP_003135075.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Sus scrofa] Length = 662 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 187/344 (54%), Gaps = 19/344 (5%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G++ Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 542 >gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi] Length = 470 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/360 (31%), Positives = 200/360 (55%), Gaps = 12/360 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 + +V+ EA +G+ + +Q+ + L +DV+ A+TGSGKT AF L + LL + Sbjct: 37 LTEVLCEACESQGWKTPSKIQKEAIPVALTGRDVIGLAETGSGKTGAFALPVLQALLEKP 96 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R AL + PTRELA Q+ E L G+ V +GG+ + + L H Sbjct: 97 QRL------FALILTPTRELAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALVLGKKPH 150 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRML 183 I+V TPGRL DH+ KG ++ LK +++DEAD +L++ F +++ IL S P+ R+ + Sbjct: 151 IIVATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKILSSLPRGEGRKNM 210 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 +FSAT++ + L + ++ VRV ++S+ + + + + L ++ +V+I+ Sbjct: 211 LFSATMTKKVAKLQRASLQNPVRVEVSSKYQTVDKLLQYYLFIPLKYKEMYLVHIINELA 270 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + I+F ST + + +L F + L+G++SQ +R +L + + IATDV Sbjct: 271 GNSFIIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKTKSRSILIATDV 330 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360 A+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++ + Q + +R E L Sbjct: 331 ASRGLDIPHVDIVINYDIPTHSKDYIHRVGRTARAGRSGRAITFVCQYDVELYQRIETLI 390 >gi|322490767|emb|CBZ26031.1| putative DEAD box RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 527 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/390 (31%), Positives = 208/390 (53%), Gaps = 12/390 (3%) Query: 2 KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F+++ + + A +E G+ + T +Q + + +D++ AQTGSGKT A+ L L Sbjct: 53 KTFQDLGLCEELCSACAEAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLV 112 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 + LL + R +P + L + PTRELA QV + L G+ VA +GG + + Sbjct: 113 NWLLTQ--RKTPYLS--VLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQAC 168 Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 +L H++VGTPGR+ DH+ KG + L A+VLDEAD+MLD+ + +I+ IL+ P+ Sbjct: 169 ELSKRPHVIVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQ 228 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 RR ++FSAT+S I L K D V + + +N + + + + + Sbjct: 229 DRRTMLFSATLSTKIDRLQKASLLDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L + ++FC + A V + T L + + L G + Q R+ AL ++G+ R+ Sbjct: 289 LTKETGNHILIFCRSAALVHKITLALRILGHRALPLMGRMDQSNRNIALTKFKEGKVRML 348 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 I TDVA RG+D+P ++V++ L + E+ +HR GRT RAG +G +V +I Q ++ Sbjct: 349 ICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQK 408 Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ 388 + ++ V V P ++ E + Q +LQ Sbjct: 409 IEQQTGVKCVEYP-----SLAESEVQLVLQ 433 >gi|261187455|ref|XP_002620151.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis SLH14081] gi|239594201|gb|EEQ76782.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis SLH14081] gi|239609244|gb|EEQ86231.1| ATP-dependent RNA helicase [Ajellomyces dermatitidis ER-3] gi|327356484|gb|EGE85341.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis ATCC 18188] Length = 489 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 189/325 (58%), Gaps = 14/325 (4%) Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 +DV+ A+TGSGKT+AFG+ +LA N S + + I PTRELA+Q+ +L Sbjct: 110 RDVIGVAETGSGKTLAFGVPCIRKVLAINASRSSSRISAVI-ITPTRELAMQIYDQLVKF 168 Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 K GV +A GG S +RR L+ A +VV TPGRL D + L++ +K +VLDEA Sbjct: 169 TPK-GVGLACIYGGASKDDQRRALKK-ASVVVATPGRLKDLHSDQSLDLQKVKYLVLDEA 226 Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI----AS 211 D MLD GF DI+ I+ + P +KR+ +MF+AT ++ LA + KD V V I +S Sbjct: 227 DRMLDKGFEQDIKDIVGAMPSSRKRQTVMFTATWPMSVRKLAATFMKDPVTVTIGGDLSS 286 Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAE 266 + R ++ I +V D++ ++++L +Y KNA +VFC + +R + + Sbjct: 287 DIRANTRIKQIVEVVKPEDKEYRLLSLLNQYQRGKNAMDKVLVFCLYKKEATRIERFIRS 346 Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326 F+V + G+++Q ER +L + G + +ATDVAARG+D+P ++LV++ E Sbjct: 347 KGFKVAGIHGDMNQTERFKSLDAFKSGSVPLLVATDVAARGLDIPAVKLVLNVTFPLTVE 406 Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQN 351 + +HR GRTGRAG G+++ + +N Sbjct: 407 DYVHRIGRTGRAGSDGLAITMFTEN 431 >gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] Length = 598 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 183/347 (52%), Gaps = 16/347 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL E G ++QE L + D++ A+TG GKT+ FG+ L + D Sbjct: 83 PEIV-KALGEAGIERTFAIQELTLPLAMAGDDLIGQARTGMGKTLGFGVPLLHRVQVPGD 141 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P L + PTREL +QV +L+ G+ GG + L+ G + Sbjct: 142 -----GTPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRKGIDV 196 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 V+GTPGRL D + L + ++ +VLDEADEMLDLGF DIE IL P +R+ ++FSA Sbjct: 197 VIGTPGRLLDLAEQQHLVLGKVRGLVLDEADEMLDLGFLPDIERILRMVPDERQTMLFSA 256 Query: 188 TISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVNILRY 241 T+ I TLA+ + + + A EN + + YRA + D+ I +L+ Sbjct: 257 TMPGPIITLARTFLRQPTHIR-AEENDASAIHERTTQFVYRAHSM---DKPEVIARVLQA 312 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 ++F T+ + + L E F A+ G+L Q R AL+ R G+ V +AT Sbjct: 313 EDRGLTMIFSRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVAT 372 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARGID+ D+ VI+ + + + +HR GRTGRAGR G++V ++ Sbjct: 373 DVAARGIDIDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGVAVTLV 419 >gi|114794734|pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 35 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 153 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 154 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 213 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 214 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 273 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 274 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 333 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 334 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 381 Query: 362 EANVSVV 368 E N+++ Sbjct: 382 ERNINIT 388 >gi|3776021|emb|CAA09211.1| RNA helicase [Arabidopsis thaliana] Length = 441 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 188/357 (52%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D S AL Sbjct: 87 GFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-ISLVQCQ-AL 140 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV C+GG SV ++R LQ+G H+VVGTPGR+ D Sbjct: 141 VLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDL 200 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L +K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 201 LRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 260 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 261 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 320 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 321 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 380 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + +R + R NV V E PS Sbjct: 381 NFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVV--EELPS 435 >gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like [Saccoglossus kowalevskii] Length = 694 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/353 (34%), Positives = 192/353 (54%), Gaps = 14/353 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64 ++ ++I + Y T VQ+ L P +R ++D++ AQTGSGKT AF L + S + Sbjct: 236 DLGEIIQSNIKNSTYARPTPVQKYAL-PIIRLKRDLMACAQTGSGKTAAFLLPILSQIYE 294 Query: 65 ENDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 P S PL L +APTRELA Q+ E ++ V V GG V + Sbjct: 295 NGPGKIPESRYARRKHFPLGLVLAPTRELASQIYDEARKFSYRSHVRPCVVYGGADVGGQ 354 Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DS 175 R+L G H++V TPGRL D + + + +K VVLDEAD MLD+GF I I+ D+ Sbjct: 355 MRELDRGCHLLVATPGRLVDMMERGKIGLDQIKWVVLDEADRMLDMGFEPQIRRIVEQDT 414 Query: 176 SPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233 PK +R+MLMFSAT I LA+++ + + + + +I + V V +D+ + Sbjct: 415 MPKTGERQMLMFSATFPKEIQILARDFLDNYIFLAVGRVGSTSVNITQKVVWVDENDKRS 474 Query: 234 AIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 ++++L G+ + +VF T+ L + ++ G+ SQ+ER AL+ R Sbjct: 475 FLLDLLSATGSDSLTLVFVETKKGADSLEDFLYRDGHRATSIHGDRSQREREEALRSFRT 534 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 G+ + +AT VAARG+D+P+++ VI+ ++ S+ E +HR GRTGR G G++ Sbjct: 535 GQTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGNLGLAT 587 >gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Pichia pastoris GS115] gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Pichia pastoris GS115] gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435] Length = 478 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 112/349 (32%), Positives = 195/349 (55%), Gaps = 10/349 (2%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F +P+++ EA + Y T +Q + L+ +D++ AQTGSGKT AF + + +L Sbjct: 77 FGLVPEIL-EACEKLKYTKPTPIQAESIPYALKGRDIIGLAQTGSGKTAAFAIPVLQSLY 135 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + F +APTRELA Q+ + L + G+ +GG+ + + +DL Sbjct: 136 EQATPF------FCCVLAPTRELAYQIKETFDSLGSGMGLRSVCIVGGMDMIDQAKDLMR 189 Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182 H++V TPGRL DH+ KG ++ LK +++DEAD +LDL F I+ +L P++R Sbjct: 190 KPHVIVATPGRLMDHLENTKGFSLKALKYLIMDEADRLLDLEFGPAIDKVLKLIPRERST 249 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +FSAT++ I L + D ++V+++S+ + ++V ++ ++ +L + Sbjct: 250 YLFSATMTNKIEKLQRASLVDPIKVSVSSKYSTVDSLIQSLMVVPDGYKNTFLIYLLNKY 309 Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 K+ I+F T A R T +LA + F + L G+L+Q +R AL + + +AT Sbjct: 310 QNKSIIIFTRTCAHAQR-TALLARLMDFSAIPLHGQLNQSQRLGALNKFKARERTILVAT 368 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 DVAARG+D+P +++VI+ ++ ++ + +HR GRT RAGR G S+ ++ Q Sbjct: 369 DVAARGLDIPMVDVVINFDIPTDSKAYIHRVGRTARAGRSGRSISLVTQ 417 >gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis Pb18] Length = 482 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 185/340 (54%), Gaps = 8/340 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA GY T +Q + L+ +D++ A+TGSGKT AF L + L+ + P Sbjct: 69 EACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDK-----PQ 123 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 S L +APTRELA Q+ E L + V AV +GG+ + + L HI+V TP Sbjct: 124 SL-FGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHIIVATP 182 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +LK +V+DEAD +LDL F ++ IL P++RR +FSAT+S Sbjct: 183 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSS 242 Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 + +L + + +RV+I+S Q S + + + +D +V +L ++AI+F Sbjct: 243 KVESLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKYKDIYLVYLLNEFAGQSAIIF 302 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T R +L F + L G+LSQ R AL R + +ATDVAARG+D+ Sbjct: 303 TRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDILVATDVAARGLDI 362 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 P +++V++ +L + + +HR GRT RAG+ G + + Q Sbjct: 363 PSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQ 402 >gi|163800192|ref|ZP_02194093.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp. AND4] gi|159175635|gb|EDP60429.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp. AND4] Length = 443 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 183/337 (54%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + T +Q+ + + KD+L S++TGSGKT+AF L + L +N FS A Sbjct: 16 LKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KNKSFS-ARD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P A+ +APTRELA QV EL + A+ +GG + + + + L+ +V TPGR Sbjct: 74 PRAVILAPTRELAKQVYGELRSMLGGLSYDAALVLGGENFNDQVKALRRYPKFIVATPGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192 L DH+ + L + L+ +VLDEAD MLDLGF ++ I ++ +RR LMFSAT+ A Sbjct: 134 LADHLDHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAE 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251 + +A R+ I N +H DI + L D AI+ +L + I+F Sbjct: 194 VNGIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAEYRQVIIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR R T L E + VALSG L+Q +R+ + ++ + TDVA+RGID+ Sbjct: 254 ATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGIDIA 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + VI+ ++ + E +HR GRTGRAG KG +V ++ Sbjct: 314 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLV 350 >gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP-6] gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP-6] Length = 427 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 181/337 (53%), Gaps = 1/337 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + A++ GY T +Q + P L KD+L AQTG+GKT AF L + + AE Sbjct: 7 NIIDPLLRAIALEGYTTPTPIQMLAIPPLLEGKDLLGIAQTGTGKTAAFVLPILQRMSAE 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P S P L +APTRELA Q+G+ V GGV + L G Sbjct: 67 RRASRPGS-PRVLVLAPTRELAAQIGQSFATYGKFLRFRQLVIFGGVRQGPQVNMLSRGV 125 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D + + + ++ VLDE D MLD+GF D++ I+ + P+K L F Sbjct: 126 DILVATPGRLLDLMNQGYIELKGVEFFVLDEIDRMLDMGFIRDVKRIVSALPEKHSSLFF 185 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ LA++ D V V + ID + V + +++ ++++L K Sbjct: 186 SATLTRETGELAQSLLNDPVHVQASPSACTLDSIDQQVFFVDQNSKNSLLLDLLLKEDMK 245 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF T+ + ++L+++ Q A+ G SQ +R+ ++ R GR RV +ATD+AA Sbjct: 246 RVLVFARTKHRADKVAQMLSKNRIQSDAIHGNKSQNQRTKTMERFRSGRIRVLVATDIAA 305 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 RGID+ D+ V++ +L + PE+ +HR GRTGRAG G Sbjct: 306 RGIDIDDITHVVNYDLPNEPESYVHRIGRTGRAGASG 342 >gi|297842017|ref|XP_002888890.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334731|gb|EFH65149.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 414 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 188/357 (52%), Gaps = 9/357 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D S AL Sbjct: 60 GFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-ISLVQCQ-AL 113 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV C+GG SV ++R LQ+G H+VVGTPGR+ D Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDL 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L +K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 + +L + PEN LHR GR+GR GRKG+++ + +R + R NV V E PS Sbjct: 354 NFDLPTQPENYLHRIGRSGRFGRKGVAINFMTTEDERMLADIQRFYNVVV--EELPS 408 >gi|225719342|gb|ACO15517.1| Eukaryotic initiation factor 4A-III [Caligus clemensi] Length = 403 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P L+ +DV+ AQ+G+GKT F +++ ++ + L Sbjct: 49 GFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSI------DTSLRETQCL 102 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ + L L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 103 VLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDM 162 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ I + P ++ + SAT+ I + Sbjct: 163 IRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQICLISATLPHEILEMTS 222 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D +R+ + + I V V + + + + ++ A++FC+T+ V Sbjct: 223 KFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 282 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T+ + E F V ++ G++ Q+ER ++ R G++RV I TDV ARGID+ + LVI Sbjct: 283 DWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 342 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345 + +L +N E +HR GR+GR GRKG+++ Sbjct: 343 NYDLPNNRELYIHRIGRSGRFGRKGVAI 370 >gi|162148820|ref|YP_001603281.1| cold-shock DEAD box protein A-like protein [Gluconacetobacter diazotrophicus PAl 5] gi|161787397|emb|CAP56992.1| Cold-shock DEAD box protein A homolog [Gluconacetobacter diazotrophicus PAl 5] Length = 483 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 122/358 (34%), Positives = 189/358 (52%), Gaps = 8/358 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY + T +Q + L +DVL AQTG+GKT +F L + L R A P +L Sbjct: 2 GYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILSGSRAR---ARMPRSL 58 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 + PTRELA+QV + A+ IGG S+ ++ L G +++ TPGRL D Sbjct: 59 ILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRGVDVLIATPGRLIDL 118 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 GL ++ + +V+DEAD MLD+GF DIE I+ R+ L FSAT++P I LA Sbjct: 119 FERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLFFSATMAPEIRRLAD 178 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258 + ++ + ++ + + I+ V+V +D+ + +LR +NAIVFC+ + V Sbjct: 179 MFLQNPKEITVSRPSSVATTIETGLVVVDEADKRRVLRRMLRDDAVQNAIVFCNRKRDVD 238 Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 K L +H F AL G+L Q R L+ + G ++ + +DVAARGID+ L V + Sbjct: 239 VLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCSDVAARGIDIGGLSHVFN 298 Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376 +L + E+ +HR GRTGRAGR G + ++ +R EA +++ P +E Sbjct: 299 FDLPFHAEDYVHRIGRTGRAGRSGHAY-----SLATPYDRALAEAIETLIGHAIPRLE 351 >gi|187733875|ref|YP_001881017.1| ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94] gi|187430867|gb|ACD10141.1| putative ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94] gi|320175218|gb|EFW50327.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112] gi|320183285|gb|EFW58140.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83] gi|332097530|gb|EGJ02510.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74] Length = 454 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++E+GY T +Q+ + L +D++ SAQTG+GKT F L L L+ Sbjct: 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 AL + PTRELA Q+G + + V GGVS++ + L+ G ++V TPG Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D + + ++ +VLDEAD MLD+GF DI +L P KR+ L+FSAT S I Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA+ + + + +A N + V + + +++ + +VF T Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + + + L + + A+ G SQ R+ AL + RV +ATD+AARG+D+ +L Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEEL 314 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368 V++ EL + PE+ +HR GRTGRA G + V V + R E+L ++ + Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374 Query: 369 -WEPAPSVEA 377 +EP PS++A Sbjct: 375 GYEPDPSIKA 384 >gi|71665094|ref|XP_819521.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL Brener] gi|70884825|gb|EAN97670.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi] Length = 511 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 198/377 (52%), Gaps = 13/377 (3%) Query: 14 ALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 A +E G+ N T +Q A + P ++E +D++ AQTGSGKT A+ L L + LL + S Sbjct: 51 ACAEAGWQNPTRIQAATI-PVVKEGRDIIGVAQTGSGKTGAYVLPLVNWLLTQ----SKV 105 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 L + PTRELA QV + L G+ VA +GG + + +L H+VVGTP Sbjct: 106 PYLSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSKRPHVVVGTP 165 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GR+ DH++ KG + L A+VLDEAD+MLD+ + +I+ IL+ P R+ ++FSAT++ Sbjct: 166 GRIKDHLQNTKGFQLVKLHALVLDEADKMLDMDYEKEIDAILEHLPHSRQTMLFSATLNT 225 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 I L K D V + + +N + V + + L + +VFC Sbjct: 226 KIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFAQMLPYLHLYLTRETGNHILVFC 285 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + A V R T L Q + L G + Q R+ AL ++G+ R+ + TDVA RG+D+ Sbjct: 286 RSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKVRILVCTDVAQRGLDIS 345 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 ++V++ L E+ +HR GRT RAG +G +V +I Q +R+ EA V E Sbjct: 346 HTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQRI--EATTGVKCEE 403 Query: 372 APSVEAIRERDAQRILQ 388 P ++E D +LQ Sbjct: 404 WP----VQEGDVAAVLQ 416 >gi|311276168|ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus scrofa] Length = 646 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 187/344 (54%), Gaps = 19/344 (5%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + + EN Sbjct: 184 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 242 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 243 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 302 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 303 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 362 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V SD+ + ++++L Sbjct: 363 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 422 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 423 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 482 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G++ Sbjct: 483 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 526 >gi|20373098|dbj|BAB91216.1| RNA helicase [Mesocricetus auratus] Length = 662 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 192/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + A EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V D+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein [Photobacterium sp. SKA34] gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein [Photobacterium sp. SKA34] Length = 427 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 181/347 (52%), Gaps = 11/347 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL++ GY T VQ+ + L+ DV+ AQTG+GKT AF L L L+ + Sbjct: 14 KALTDLGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFTLPLLQRLMTLPSQAEQV 73 Query: 73 SAPL-----------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 S + AL + PTRELA QV + T + VAV GG S++ + + L Sbjct: 74 STAVENNQKSRNKIRALILTPTRELAQQVFDSITTYAKYTEIKVAVAYGGTSMNVQVKAL 133 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 GA I+V TPGRL DH+ +++S ++ VLDEAD MLD+GF DI+ I+ P +R+ Sbjct: 134 NAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVDIQRIMKRMPAERQ 193 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 L FSAT S + LA + + V + N ++ V + + ++ Sbjct: 194 TLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQIVYPVDKHRKAELLAYLIGS 253 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + +VF T+ + K L + +++G+ SQ R AL + G+ RV +AT Sbjct: 254 RNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGKTRVLVAT 313 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 DVAARG+D+ LE V++ ++ E+ +HR GRTGRAG G ++ ++ Sbjct: 314 DVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLM 360 >gi|309362056|emb|CAP28713.2| hypothetical protein CBG_09074 [Caenorhabditis briggsae AF16] Length = 747 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/367 (32%), Positives = 185/367 (50%), Gaps = 28/367 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64 P + A+ E GY+ T +Q + L+ +DV+ A+TGSGKT AF L L T L Sbjct: 325 FPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 384 Query: 65 ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + +R + P A+ +APTRELA Q+ E G+ IGG S + L+ Sbjct: 385 KIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQGMKLRM 444 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177 G +V+ TPGRL D + + L ++ V+LDEAD MLD+GF D++ IL+ P Sbjct: 445 GVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLPASNMKK 504 Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218 K R+ +MF+AT+SPAI LA+ Y + V+I + + Sbjct: 505 DTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNAGKPTER 564 Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278 ++ ++ + ++ ++ H IVF + + K LA+ + L G Sbjct: 565 VEQVVYMITKDRKPKKLLEVISQHDKYPIIVFVNRKHGADSLAKGLAKVGKKTSVLHGGK 624 Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338 Q R AL+ ++D ++ +ATDVA RGID+ D+ LVI+ +++ E+ HR GRTGRA Sbjct: 625 GQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 684 Query: 339 GRKGMSV 345 G+ G ++ Sbjct: 685 GKHGKAI 691 >gi|219119587|ref|XP_002180550.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408023|gb|EEC47958.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 552 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 184/354 (51%), Gaps = 13/354 (3%) Query: 8 PQVIGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 P+ IG+ L GY T VQ+ + + +D++ AQTGSGKT F + +++ Sbjct: 126 PETIGDDLFRNTQLCGYSRPTPVQKYSVPICTQGRDLMACAQTGSGKTAGFLFPIIMSMI 185 Query: 64 AENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 P +A P AL +APTRELA Q+ E + TG+ V GG +V + Sbjct: 186 KRGGSDPPENARRRIYPEALVLAPTRELAQQIHEEAKRFTYATGIASVVIYGGANVGDQL 245 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R+++ G ++V TPGRL D I L + + +VLDEAD MLD+GF I I++ S Sbjct: 246 REMERGCDLLVATPGRLVDLIERGRLGMESVSFLVLDEADRMLDMGFEPQIRRIVEESGM 305 Query: 179 ----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 R+ +MFSAT I LA ++ +D V + + D+ V D+ +A Sbjct: 306 PGGIDRQTMMFSATFPANIQRLASDFMRDYVFLTVGRVGSASKDVTQTVEFVEERDKVDA 365 Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294 ++ L ++F T+ S VL F ++ G+ SQ+ER +AL+ ++G Sbjct: 366 LMKFLLTIQDGLILIFVETKRSCDYVEDVLCGQGFPACSIHGDKSQREREDALRYFKNGN 425 Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + AT VAARG+D+P++ V++ +L SN ++ +HR GRTGRAG G ++ I Sbjct: 426 TPILCATSVAARGLDIPNVTQVVNYDLPSNIDDYVHRIGRTGRAGNTGAALSFI 479 >gi|237845101|ref|XP_002371848.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49] gi|211969512|gb|EEB04708.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49] gi|221501473|gb|EEE27248.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG] Length = 657 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 113/355 (31%), Positives = 184/355 (51%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 PQ I + L ERG T +Q + L+ +D++ A TGSGKT+ F L + L Sbjct: 215 FPQPILKGLQERGISYPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIMGALESE 274 Query: 67 DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-----TGVVVAVCI-GGVSVHRER 118 R + P P L + P+RELA Q + K + VCI GG S + Sbjct: 275 IRSPYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEDGGYPALRCVCIIGGCSAVEQA 334 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 ++++ G H +V TPGRL D + + L + + + DEAD M+D+GF +++ +LDS Sbjct: 335 KEVRQGVHCIVATPGRLTDMLNKRRLALQQCEYLCFDEADRMVDMGFEEEVRNVLDSFGH 394 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AK+ D + VN+ + D+ V ++ +++ Sbjct: 395 QRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQENKLPYLLHC 454 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ A ++FC + V + L A+ G L+Q+ERS A++ R+GR V Sbjct: 455 LQ-KTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAFREGRKDVL 513 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + TDVA++G+D P ++ VI+ ++ EN +HR GRTGR GR G++ + +N + Sbjct: 514 VGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVNKNQE 568 >gi|226366438|ref|YP_002784221.1| ATP-dependent RNA helicase [Rhodococcus opacus B4] gi|226244928|dbj|BAH55276.1| ATP-dependent RNA helicase [Rhodococcus opacus B4] Length = 465 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 186/366 (50%), Gaps = 5/366 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 +P V+ AL G +Q A + L +DVL A TGSGKT+AFGL + L Sbjct: 20 GLPAVMTHALDRGGIAAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLVRLKGA 79 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 R P + + PTRELA+Q+ R L+ G+ VA +GGV + R+ L G Sbjct: 80 ASRRG---YPRGVVLVPTRELALQIERALDEPALSVGLRVANVVGGVPIKRQAETLSRGV 136 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL DH+ +++ + + LDEAD M DLGF + ILD +P + L+F Sbjct: 137 DLLVATPGRLADHLAQGSVSLDDVTVLALDEADHMADLGFLPQVTTILDKTPAGGQRLLF 196 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT+ + TL + Y + V + A + + + V D+ + + +I G Sbjct: 197 SATLDGDVDTLVRRYLHEPVTHSTAPAAAAVPTMRHHLLYVDRRDKYSVVAHIGSRPG-- 254 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ V R + L AL G +Q R+ L DG V +ATDVAA Sbjct: 255 RTLMFVRTKHGVDRVAQELHAAGVAAGALHGGKAQNNRTRTLASFADGTTPVLVATDVAA 314 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 RGI + + LV+H + + ++ LHR+GRT RAG G+ V ++ ++ + E+L R+A + Sbjct: 315 RGIHVDGITLVVHVDPPTEAKDYLHRAGRTARAGESGVVVTLVTEDERAAVEKLTRQAGL 374 Query: 366 SVVWEP 371 + P Sbjct: 375 DITATP 380 >gi|67483578|ref|XP_657009.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS] gi|56474243|gb|EAL51623.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS] Length = 384 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 107/352 (30%), Positives = 186/352 (52%), Gaps = 10/352 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 + + ++GY + +Q+ + P + +DV+ +Q+G+GKT F + + + + Sbjct: 25 KGIYQQGYTKPSGIQQKGIVPITKGRDVIAQSQSGTGKTATFSIGILQNVESNKREVQ-- 82 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + I+PTRELAVQ R + L + V CIGG S + + ++ G ++ GTP Sbjct: 83 ----VIIISPTRELAVQSERVISGLSQYMAIQVRGCIGGKSEKEDIKAIEKGCQVISGTP 138 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GR+ I+ + +N+ H+K +V+DEADEML+ GF I I P KR++++ SAT++P Sbjct: 139 GRIMGLIKKRVINVRHIKTLVIDEADEMLNKGFMPIIYDIFKYLPIKRQIVLCSATLTPD 198 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + + + + I + +I Y + + + + I +++FC Sbjct: 199 VIEIGTKIMNKPIEILIKRDEVTVEEIKQYFIEMEGEEQKFDTLCEIYDSMTITQSVIFC 258 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 + R V T+ + + F V+++ E+ QQER + + R G RV I TDV ARGID+ Sbjct: 259 NMRKKVDWLTENMMKANFPVISMHSEMPQQERDYIMNIFRKGEKRVLITTDVWARGIDVT 318 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360 + LVI+ ++ N E +HR GR+GR GR G+++ FV+ M+ R ER + Sbjct: 319 QISLVINYDMPLNREVYIHRIGRSGRFGRTGIAINFVLKNEMEELRDLERYY 370 >gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN] Length = 448 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 122/352 (34%), Positives = 184/352 (52%), Gaps = 5/352 (1%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ I +A+ E GY T +Q + L D+L AQTG+GKT AF L + Sbjct: 1 MKFEELNLAPAILKAVQETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML 60 Query: 60 STL---LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 L A ++F AL + PTRELA QV + + V GGV ++ Sbjct: 61 HRLSQGTAPKNKFG-GKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNP 119 Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 + ++ G I+V TPGRL D + L++S ++ +VLDEAD MLD+GF D++ +L Sbjct: 120 QIDRIKRGVDILVATPGRLLDLQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALV 179 Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 PK ++ L+FSAT S I LA K+ + + N I V + ++ Sbjct: 180 PKDKQSLLFSATFSDEIRELANTLLKNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLL 239 Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296 +I++ H +VF T+ + + L ++ Q +AL G SQ R+ AL + G R Sbjct: 240 HIIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGEIR 299 Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +ATD+AARGID+ DL V++ E+ + E+ +HR GRTGRAG G +V ++ Sbjct: 300 ALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGASGEAVSLV 351 >gi|212528762|ref|XP_002144538.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC 18224] gi|210073936|gb|EEA28023.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC 18224] Length = 452 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 182/337 (54%), Gaps = 11/337 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 TSVQ A +DV+ A+TGSGKT+AFGL ++ + P S P A+ + PT Sbjct: 111 TSVQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCVKNMVDSKKKLKP-SHPRAVILTPT 169 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA+Q+ +LE + V V GGV +R L++ A IVV TPGRL D Sbjct: 170 RELAMQIYEQLEGYAPRVSVRVTCIFGGVRKDEQREALKDTA-IVVATPGRLKDLESEGA 228 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-MFSATISPAITTLAKNYQK 202 +N+S +K +VLDEAD MLD GF DI+ I+ P RR MF+AT ++ LA ++ + Sbjct: 229 INLSKVKYLVLDEADRMLDKGFEQDIKDIVAPMPVSRRQTAMFTATWPVSVRNLANSFTQ 288 Query: 203 DAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNIL----RYHGAKNAIVFCSTR 254 D V V + + + R ++ I ++ D++N + IL R +VFC + Sbjct: 289 DPVMVTVGGKPSEDPRANTRIKQVVEVLDGRDKENRLTQILAKLTRESSQGKILVFCLYK 348 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 R +++ + V + G+LSQ +R +L + G + +ATDVAARG+D+P ++ Sbjct: 349 KEAMRIERLIQSRGYAVAGIHGDLSQSDRFKSLASFKSGAVPILVATDVAARGLDIPAVK 408 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 V++ E+ +HR GRTGRAG G ++ + +N Sbjct: 409 TVVNVTFPLTIEDYVHRIGRTGRAGADGHAITLFTEN 445 >gi|329765536|ref|ZP_08257112.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137974|gb|EGG42234.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 371 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/269 (37%), Positives = 160/269 (59%), Gaps = 1/269 (0%) Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 +APTRELA+Q+ E++ TG+ VA GG + + L G IVV TPGRL DH+ Sbjct: 1 MAPTRELAMQITTEIKKFGKYTGIRVATVYGGQGMGLQLDALDRGVEIVVATPGRLIDHL 60 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 + + + + +VLDEAD MLD+GF DDI+FILD +P++R M +FSAT+ I LA+ Sbjct: 61 KRGSIELGDVTHIVLDEADTMLDMGFVDDIQFILDLAPEERVMSLFSATMPTEILRLAEE 120 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259 Y K+ + + +++ ID +++ D+ +++ ++ + IVFCST+ Sbjct: 121 YLKNPKQFLLDADDLSGEGIDQAYLVIKDRDKMKYLIDFIKPLKGQ-IIVFCSTKYRTRD 179 Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 K L + F VA+ G++SQ R ++ R G+ + +ATDVA+RGID+P +ELV++ Sbjct: 180 VAKYLHQEKFDAVAIEGDMSQSRREQSMGKFRSGKVDILVATDVASRGIDVPRVELVVNY 239 Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ + HR GRT RAG KG ++ ++ Sbjct: 240 DVPNQEMAYFHRIGRTARAGAKGRAITLV 268 >gi|296273501|ref|YP_003656132.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097675|gb|ADG93625.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM 7299] Length = 412 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 109/340 (32%), Positives = 188/340 (55%), Gaps = 4/340 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I ++L+E Y+ T +QE ++ L KD++ AQTGSGKT +F L + + +N Sbjct: 12 INKSLTENRYIKPTEIQEKVIPLVLEHKDIIAKAQTGSGKTASFVLPILNLWYKQNYEGK 71 Query: 71 PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P L + PTRELA+QV Y V IGG S+ + ++Q G ++ Sbjct: 72 PKIR--CLVLTPTRELALQVATAFLTFSKYMNKKPKVVSVIGGESIGEQLLNIQKGCDVI 129 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V T GRL D ++ K +++S+L VLDEAD+MLD GF +++E +L+ PKKR+ L+FSAT Sbjct: 130 VATTGRLLDILKKKQMDLSNLDFFVLDEADKMLDFGFEEELELLLEVLPKKRQNLLFSAT 189 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + +A ++ + ++I +E I+ R + V +R + ++++ + + Sbjct: 190 YPTKMLNIASKITENPIEISIENEEATVQSINQRVIEVNKENRSALLRHLIKEENWQQVL 249 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF + + S ++ F+ + G+L Q+ER+ L+ + + +V ATD+AARG+ Sbjct: 250 VFMANKRSCDNLAFKFRKYGFEAESFHGDLIQEERNETLEGFKAKKIKVLFATDIAARGL 309 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + ++ V++ +L + +HR GRTGRAG+ G++V I Sbjct: 310 HIENISCVVNYDLPRATADYIHRIGRTGRAGKSGIAVSFI 349 >gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] Length = 686 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 194/365 (53%), Gaps = 8/365 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P I E ++G+ T++Q + + +D++ AQTGSGKT+A+ +A A + Sbjct: 123 LPDYILEETVKQGFTKPTAIQAQGMPIAMTGRDMVGIAQTGSGKTLAY-VAPALVHIQHQ 181 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + P+AL +APTRELA Q+ + +T GG + RDL+ GA Sbjct: 182 ETVHRGDGPIALILAPTRELAQQIQQVANDFGQRTNTNNTCVFGGAPKGPQIRDLERGAE 241 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 IV+ TPGRL D + N+ +VLDEAD MLD+GF I I+ R++LM+S Sbjct: 242 IVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWS 301 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAK 245 AT + LA+ + D +++NI S N + + V V ++D ++ +L A+ Sbjct: 302 ATWPKEVRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLTEISAE 361 Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 IVF T+ V T+ + + ++ V++ G+ SQQER L R+GR + +ATD Sbjct: 362 AETKTIVFVETKRRVDDITRSICRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGILVATD 421 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359 VAARG+D+ D++ VI+ + SN E+ +HR GRTGR+ G + + + +A L Sbjct: 422 VAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAGDLINV 481 Query: 360 FREAN 364 REAN Sbjct: 482 LREAN 486 >gi|225468923|ref|XP_002273212.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 470 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 113/339 (33%), Positives = 184/339 (54%), Gaps = 7/339 (2%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA G+ + +Q + L KD++ AQTGSGKT AF L + LL Sbjct: 56 EACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALL------DTP 109 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A ++PTRELA+Q+ + E L + G+ AV +GGV ++ L HIVVGTP Sbjct: 110 QVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPHIVVGTP 169 Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +K +VLDEAD +L+ F I+ IL P++R+ +FSAT++ Sbjct: 170 GRLMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPRERKTYLFSATMTK 229 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + ++ V++ +AS+ + + V ++ +V IL +VF Sbjct: 230 KVRKLQRACLRNPVKIEVASKYSTVDTLKQQYRFVPAKYKECYLVYILTELSGSTTMVFT 289 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T + +L + + +SG +SQ +R AL + G + I TDVA+RG+D+P Sbjct: 290 RTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGECNILICTDVASRGLDIP 349 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ SN ++ +HR GRT RAGR G+++ ++ Q Sbjct: 350 SVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQ 388 >gi|145629971|ref|ZP_01785753.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021] gi|144984252|gb|EDJ91675.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021] Length = 415 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 116/348 (33%), Positives = 189/348 (54%), Gaps = 4/348 (1%) Query: 2 KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 K F +P ++ AL+++G+ T +Q L L +DV AQTG+GKT+AF A Sbjct: 9 KRFSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATF 68 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 LL D P AL +APTRELAVQ+ + E+L +G+ A+ GG ++ + Sbjct: 69 HHLLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQ 128 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SP 177 ++ G I++GT GR+ D+++ + + ++ VVLDEAD M DLGF DI ++L +P Sbjct: 129 AIERGVDILIGTTGRVIDYVKQGVICLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAP 188 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 + R ++FSAT+S + LA D + I E + I + D+ ++ Sbjct: 189 QARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLT 248 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 ++ + IVF +T+ LA +V L+G+++Q++R + L+ DG + Sbjct: 249 LMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNLDI 308 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+ + D+ V + +L + E+ +HR GRTGRAG G+S+ Sbjct: 309 LVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356 >gi|320353576|ref|YP_004194915.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122078|gb|ADW17624.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus DSM 2032] Length = 411 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 117/344 (34%), Positives = 195/344 (56%), Gaps = 10/344 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P+ +G+ ++E G+ T +QE L L KDV QTG+GKT AF + L LL N Sbjct: 8 LPEPLGKGIAEAGFTECTPIQELTLPLTLGGKDVAGRGQTGTGKTAAFLITLFDRLLKNN 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 SP P AL +APTREL VQ+ ++ L G + GGV +++R L+ G Sbjct: 68 PPASPN--PRALILAPTRELVVQIHQDALLLGKHCGFSIQAAYGGVDYNKQREALRTGVD 125 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184 +++GTPGRL D ++ K ++ ++ +V+DEAD M DLGF D+ F+L P KR+ LM Sbjct: 126 VLIGTPGRLIDFLKQKIYTLADIEMLVIDEADRMFDLGFIGDLRFLLRRLPAFDKRQNLM 185 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ + LA + +V+++ ++ I+ V+ ++ ++ +LR G Sbjct: 186 FSATLNHRVMELAYEFMNMPEKVSVSGDSMTADKIEEILFHVSSKEKFPLLLGLLRREGM 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD---GRARVCIAT 301 + ++F +T+ R L + +SG+++Q++R L++MRD G+ + IAT Sbjct: 246 ERTMIFVNTKREGERLQARLMANDHPCRLISGDVAQEKR---LRIMRDFKAGKLPMLIAT 302 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 DVA+RG+ + + VI+ +L + E+ +HR GRT RAG +G ++ Sbjct: 303 DVASRGLHIEGVSHVINYDLPEDCEDYVHRIGRTARAGAEGKAI 346 >gi|212528760|ref|XP_002144537.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC 18224] gi|210073935|gb|EEA28022.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC 18224] Length = 503 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 182/337 (54%), Gaps = 11/337 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 TSVQ A +DV+ A+TGSGKT+AFGL ++ + P S P A+ + PT Sbjct: 111 TSVQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCVKNMVDSKKKLKP-SHPRAVILTPT 169 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143 RELA+Q+ +LE + V V GGV +R L++ A IVV TPGRL D Sbjct: 170 RELAMQIYEQLEGYAPRVSVRVTCIFGGVRKDEQREALKDTA-IVVATPGRLKDLESEGA 228 Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-MFSATISPAITTLAKNYQK 202 +N+S +K +VLDEAD MLD GF DI+ I+ P RR MF+AT ++ LA ++ + Sbjct: 229 INLSKVKYLVLDEADRMLDKGFEQDIKDIVAPMPVSRRQTAMFTATWPVSVRNLANSFTQ 288 Query: 203 DAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNIL----RYHGAKNAIVFCSTR 254 D V V + + + R ++ I ++ D++N + IL R +VFC + Sbjct: 289 DPVMVTVGGKPSEDPRANTRIKQVVEVLDGRDKENRLTQILAKLTRESSQGKILVFCLYK 348 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 R +++ + V + G+LSQ +R +L + G + +ATDVAARG+D+P ++ Sbjct: 349 KEAMRIERLIQSRGYAVAGIHGDLSQSDRFKSLASFKSGAVPILVATDVAARGLDIPAVK 408 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 V++ E+ +HR GRTGRAG G ++ + +N Sbjct: 409 TVVNVTFPLTIEDYVHRIGRTGRAGADGHAITLFTEN 445 >gi|92116022|ref|YP_575751.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14] gi|91798916|gb|ABE61291.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14] Length = 477 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 177/338 (52%), Gaps = 1/338 (0%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I AL+E Y+ T +Q + L +D++ AQTG+GKT +F L + LL + Sbjct: 19 ITRALAEENYLTPTPIQTQTIPLALAGRDIVGIAQTGTGKTASFALPILHRLLQNRIKPQ 78 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130 P S + L ++PTREL+ Q+ + A+ IGGV + R+ R + G ++V Sbjct: 79 PKSCRV-LVLSPTRELSGQILESFNAYGRHLRLTSALAIGGVPMGRQVRAVMQGVEVMVA 137 Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 TPGRL D ++ GL + ++ +VLDEAD MLD+GF DI ++ P KR+ L FSAT+ Sbjct: 138 TPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPVKRQTLFFSATMP 197 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA+ +D RV + I R + V + + + +L+ A++F Sbjct: 198 KDIAELAEQMLRDPARVAVTPVASTVDRIAQRIIQVDHASKPAFLAQLLKQEPVNRALIF 257 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + K LA+ + A+ G SQ R L R G R +ATD+AARGID+ Sbjct: 258 TRTKHGADKVVKSLAKSGIRSDAIHGNKSQNHRERVLAAFRTGEIRTLVATDIAARGIDV 317 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + V++ +L + PE +HR GRT RAG G ++ ++ Sbjct: 318 DGISHVVNFDLPNVPETYVHRIGRTARAGADGAAISLV 355 >gi|46124943|ref|XP_387025.1| hypothetical protein FG06849.1 [Gibberella zeae PH-1] gi|91207408|sp|Q4I7F9|PRP28_GIBZE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 Length = 721 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/378 (31%), Positives = 195/378 (51%), Gaps = 30/378 (7%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63 N+PQ + + + GY + + +Q A + L+ +D++ A TGSGKT AF L L + L Sbjct: 294 NLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDL 353 Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 D + P AL +APTREL Q+ E G V +GG + + +L++ Sbjct: 354 PPLDEINKHDGPYALIMAPTRELVQQIETEARKFAGPLGFRVVSIVGGHQIEEQAYNLRD 413 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177 GA IVV TPGRL D I + L +S V++DEAD M+DLGF + + ILD+ P Sbjct: 414 GAEIVVATPGRLLDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVTNEKP 473 Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218 + R+ +M++AT+ P + +AK Y + V I + Sbjct: 474 DTDEAENAQIMQRYLGGRDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAGEAVDT 533 Query: 219 IDYRAVLVALSDRDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 ++ R V+ DR + + G IVF + + + + + + + V L G Sbjct: 534 VEQRVEFVSGEDRRKKRLQEILSSGNFGPPIIVFVNIKRNCDAVARDIKQMGWSAVTLHG 593 Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 +Q++R AL +R G +V +ATD+A RGID+PD+ LV++ +++N E+ HR GRTG Sbjct: 594 SKTQEQREAALGSVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTG 653 Query: 337 RAGRKGMSV-FVIPQNMQ 353 RAG+ G+++ F+ P++ + Sbjct: 654 RAGKSGVAITFLGPEDHE 671 >gi|86130411|ref|ZP_01049011.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] gi|85819086|gb|EAQ40245.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] Length = 428 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 192/349 (55%), Gaps = 22/349 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 I EAL+ V T +Q+ + P L +KDV+ AQTG+GKT+AFG+ L + DR Sbjct: 14 IQEALAALDIVQPTDIQQQAI-PALLTSKKDVVALAQTGTGKTLAFGVPLLQLI----DR 68 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHI 127 +P A+ + PTREL Q+ + A+ V AV GG+ V L+ A I Sbjct: 69 TNPTVQ--AVILVPTRELGQQIYSNIVAYAAQLPEVSAAVFYGGIPVKENIERLKEPAQI 126 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 V+ TPGRL D + K +NIS +VLDEADEM+ ++ I+ I+++ P RR +FSA Sbjct: 127 VIATPGRLIDLMERKAINISQANYLVLDEADEMVS-ALKNSIDVIVETMPNNRRTFLFSA 185 Query: 188 TISPAITTLAKNY------QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 T+ + L +NY + A R N+AS H DY V+V ++ + +++ L Sbjct: 186 TMPGTVKQLVQNYLSKNPLEITAERANLASHKITH---DY--VVVEPIEKLDVLMHFLNS 240 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + I+FC T+A+V++ K LA + F AL G LSQ R + R+G + +AT Sbjct: 241 KIGERGIIFCKTKAAVNKLAKNLAINKFSSGALHGSLSQAIRDRMMGQFREGHIDILVAT 300 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 D+AARGID+ ++ V++ L + +HR+GRT RAG+ G ++ V+ Q Sbjct: 301 DLAARGIDVKEISYVVNYHLPEFYDMYVHRTGRTARAGKTGYALTVLQQ 349 >gi|320587284|gb|EFW99764.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407] Length = 481 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 117/333 (35%), Positives = 186/333 (55%), Gaps = 20/333 (6%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY T +Q A + L+ +D++ +A+TGSGKT+AF L + LL DR P L Sbjct: 89 GYTAPTPIQAAAIPVALKNRDIIGTAETGSGKTIAFALPMLQALL---DRPRPL---FGL 142 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+G+ E +A + AV +GG+ + + L H+V Sbjct: 143 VLSPTRELAVQIGQTFES-FAAISLRCAVVVGGMDMVSQSIALAKKPHVVT--------- 192 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 KG ++ HL+ +V+DEAD +LD+ F +E IL P++RR ++FSAT+S + +L + Sbjct: 193 ---KGFSLKHLQYLVIDEADRLLDMDFGPILEKILRHLPRERRTMLFSATMSSQVESLQR 249 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKNAIVFCSTRASV 257 +D VRVN+AS Q ++V+V + R D +V ++ ++ +VF T Sbjct: 250 ASLRDPVRVNVASSAHQTVSTLKQSVIVTPTTRKDVCLVYLVNEFYGQSIMVFTRTIYET 309 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 R +L F V L LSQ +R +AL ++ G + IATDVAARG+D+P + +VI Sbjct: 310 QRLAILLRALGFGAVPLHARLSQSQRLSALNKIKSGSREMLIATDVAARGLDIPHIGIVI 369 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 + ++ + + +HR GRT RAG+ G +V ++ Q Sbjct: 370 NYDVPQDSKTYVHRVGRTARAGKSGHAVNLVTQ 402 >gi|260773326|ref|ZP_05882242.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] gi|260612465|gb|EEX37668.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] Length = 428 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 113/338 (33%), Positives = 189/338 (55%), Gaps = 2/338 (0%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL+E GY LT +Q+ + + D+ +AQTG+GKT AF L + LL Sbjct: 10 PELV-KALTECGYEKLTPIQQQAIPEARKGHDIFATAQTGTGKTAAFSLPVIQRLLDSGK 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + SP +A AL +APTRELA Q+ + ++ T + V GG + + R L++G I Sbjct: 69 KPSPHTA-RALILAPTRELAAQIAQNIKDYVKYTSLSVTAVYGGNKMSSQVRQLESGVDI 127 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 +V TPGRL +H+ +++++L+ +V DEAD +LD+GF + + I+ +++MFSA Sbjct: 128 LVATPGRLEEHLSEGNVSLANLEFLVFDEADRILDMGFINPVRKIMLEVETSPQIMMFSA 187 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247 T S + LA + + R+N N S + + V + + ++ + Sbjct: 188 TTSAQLNQLAGDILRKPKRINADRVNTTASTVAHVVYPVDQERKTELLSELIGRKNWQQV 247 Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 +VF + + + ++ K L + V G+ Q R AL ++G+ARV +ATDVAARG Sbjct: 248 LVFVNYKETANQVVKELKLDGIKAVICHGDKGQSARRRALDEFKEGKARVMVATDVAARG 307 Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +D+ DL VI+ ++ E+ +HR GRTGRAG++G +V Sbjct: 308 LDIVDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAV 345 >gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii L2-6] Length = 648 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 129/372 (34%), Positives = 194/372 (52%), Gaps = 14/372 (3%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +A+SE GY + +Q + + P L +D++ AQTG+GKT AF L + L A R Sbjct: 14 KAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPMLDRLSAAAPRRK-- 71 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 A AL + PTRELA+Q+G + + V GGV + ++ G I++ P Sbjct: 72 GAVRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAIRKGVDILIACP 131 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL D I +++S+L+ VLDEAD MLD+GF D++ ++ P KR+ LMFSAT+ Sbjct: 132 GRLNDLIGQGHIDLSNLEVFVLDEADRMLDMGFVHDVKKVIAKLPAKRQNLMFSATMPKE 191 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNAIVF 250 I LA D V + + ID V ++ + +++ +NA+VF Sbjct: 192 IEQLAAGILHDPAFVKVDPVSSTVERIDQSLYFVEKGNKKLLLPWLIKNLTPPVQNALVF 251 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 T+ + + L + A+ G SQ R AL+ ++G+ RV +ATD+AARGID+ Sbjct: 252 SRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAALEGFKEGKTRVLVATDIAARGIDI 311 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREANVSV 367 +L V + +L PE +HR GRT RAG G +V F P+ M+ A E+L R + V Sbjct: 312 SELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEMEYLAGIEKLNRR-KIPV 370 Query: 368 V----WE--PAP 373 V W+ PAP Sbjct: 371 VSGHPWDGVPAP 382 >gi|195621064|gb|ACG32362.1| ATP-dependent RNA helicase DDX47 [Zea mays] Length = 455 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/339 (32%), Positives = 186/339 (54%), Gaps = 4/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA G+ T +Q + L+ KD++ AQTGSGKT AF L + LL+ Sbjct: 37 EACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQELLSNR---QAE 93 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + A ++PTRELA+Q+ + E L + G+ +V +GGV ++ + HIVVGTP Sbjct: 94 QSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTP 153 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +K +VLDEAD++L++ F ++ IL PK RR +FSAT++ Sbjct: 154 GRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILSEMPKDRRTFLFSATMTK 213 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + ++ +V ++S+ + V D+D ++++L ++F Sbjct: 214 KVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHVLNERLESMIMIFV 273 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T S +L + +++SG++SQ +R AL + + I TDVA+RG+D+ Sbjct: 274 RTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQ 333 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ N ++ +HR GRT RAGR G +V ++ Q Sbjct: 334 GVDMVINYDIPINSKDYVHRVGRTARAGRSGYAVSLVNQ 372 >gi|33598402|ref|NP_886045.1| ATP-dependent RNA helicase DbpA [Bordetella parapertussis 12822] gi|33574531|emb|CAE39177.1| probable ATP-dependent RNA helicase [Bordetella parapertussis] Length = 462 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 130/389 (33%), Positives = 206/389 (52%), Gaps = 22/389 (5%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +T +Q L L +D++ A+TGSGKT AFGL + L + +R AP AL Sbjct: 23 GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNL--DVNRL----APQAL 76 Query: 79 AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + PTRELA QV +EL L V V GG + + L G H+VVGTPGR+ D Sbjct: 77 VLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQD 136 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 H+ L++S L +VLDEAD M+D+GF DDI I P +R+ L+FSAT I L+ Sbjct: 137 HLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLS 196 Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257 + ++ + + +++ S I+ + R +A+ +L + + + FC+T+ Sbjct: 197 ARFLRNPAEIKVEAQH-DASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLAFCNTKIRS 255 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 + L AL+G+L Q+ER L + V +ATDVAARG+D+ +L VI Sbjct: 256 HDLVERLRAQGISAEALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP--- 373 + +++ + E +HR GR+GR +KG+++ P+ M R AN+ ++ AP Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEM--------RWANLIEQYQGAPLKW 367 Query: 374 -SVEAIRERDAQRILQDPLFLDSIQGDEK 401 + ++R + + R L+ P+ IQG +K Sbjct: 368 ADLGSLRPK-SDRPLRAPMITLCIQGGKK 395 >gi|70989821|ref|XP_749760.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293] gi|74668891|sp|Q4WH83|DBP3_ASPFU RecName: Full=ATP-dependent RNA helicase dbp3 gi|66847391|gb|EAL87722.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293] gi|159129169|gb|EDP54283.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163] Length = 503 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 185/336 (55%), Gaps = 11/336 (3%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 + + T +Q A +DV+ A+TGSGKT+AFGL +L + P A+ Sbjct: 105 FSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVI 164 Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 I+PTRELA+Q+ +L A + V GGV +R L+ A IVV TPGRL D Sbjct: 165 ISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAA-IVVATPGRLKDLK 223 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAK 198 +++ +K +VLDEAD MLD GF DI+ I+ S+P R+ +MF+AT P++ LA Sbjct: 224 DDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTATWPPSVRDLAA 283 Query: 199 NYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA---KNAIV 249 ++ AV V I +++ R ++ I +V +++ +V +L GA +V Sbjct: 284 SFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLSRSQRGAAVGDKVLV 343 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 FC + R ++L F+V + G+L+Q ER +L+ + G A V +ATDVAARG+D Sbjct: 344 FCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERFKSLEAFKTGSATVLVATDVAARGLD 403 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +P ++LVI+ E+ +HR GRTGRAG G ++ Sbjct: 404 IPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAI 439 >gi|302340274|ref|YP_003805480.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293] gi|301637459|gb|ADK82886.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM 11293] Length = 541 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/348 (33%), Positives = 190/348 (54%), Gaps = 7/348 (2%) Query: 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59 MK E N+ + + + + G+ VQEA L L+ KDV V +QTGSGKT AF + Sbjct: 1 MKFEEFNLHEDVLAGIKDAGFEACMPVQEATLKETLQGKDVTVQSQTGSGKTAAFLV--- 57 Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 T+ P + I+PTRELAVQ+ E + L A G+ + GGV ++ Sbjct: 58 -TIFQRWCTTKPEERRSTMIISPTRELAVQIEDEAKLLGAHMGMNIGCFYGGVGYKQQEE 116 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPK 178 L+ G + +GTPGRL D + + ++ + + VV+DEAD + D+GF DI +L P+ Sbjct: 117 ALKKGVDLYIGTPGRLIDFGQNRKIDFTTIGTVVIDEADRLFDMGFYPDIRRMLKMMGPR 176 Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 ++RM M FSAT+ + +A + V V+I E+ +I V + + ++ Sbjct: 177 EKRMTMLFSATLGTKVLNVAWEHMNMPVEVSIEPEHITVREITQELYHVEGEKKFSLMLG 236 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L+ + NAI+F + + + K L+ + + L G+L Q++R + + ++ G R Sbjct: 237 LLKKYDPPNAIIFTNMKVTAVEVAKRLSRNGYAAKFLMGDLPQKKRLSTIDRVKHGEIRF 296 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 +ATDVAARG+ + DL +VI+ ++ +PE+ +HR GRT RAG+ G ++ Sbjct: 297 LVATDVAARGLHVDDLAMVINYDIPEDPESYVHRIGRTARAGKSGRAI 344 >gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916] gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916] Length = 449 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 182/337 (54%), Gaps = 4/337 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 +AL E+GY + +QE + L +D++ +AQTG+GKT F L + TL + P Sbjct: 28 QALREKGYSTPSPIQEQAIPAVLSGRDLMAAAQTGTGKTAGFTLPMLETL---SHGARPG 84 Query: 73 SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131 + AL + PTRELA QV + V GGV ++ + + LQ G ++V T Sbjct: 85 RGQIRALVLTPTRELAAQVLDNARDYSRHLRLRSEVVFGGVKINPQIQRLQQGVDLLVAT 144 Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 PGRL D + + ++ +VLDEAD MLD+GF DI +L P++R+ L+FSAT SP Sbjct: 145 PGRLLDLHQQGAVRFERVEFLVLDEADRMLDMGFIHDIRRVLSRLPERRQNLLFSATFSP 204 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 +I LA D +++ I N+ + + + + + +++R + + +VF Sbjct: 205 SIRKLATGLLNDPLQIQITPPNQTARTVQQVVHPCDMKRKPDLLSHLIRSNDWQQVLVFS 264 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T+ +R + L A+ G SQ R+ ALQ +DG RV +ATD+AARGID+ Sbjct: 265 RTKHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQGFKDGSVRVLVATDIAARGIDIQ 324 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 L V++ +L + E+ +HR GRTGRAG G ++ ++ Sbjct: 325 QLPHVVNLDLPNVAEDYVHRIGRTGRAGECGHAISLV 361 >gi|169600899|ref|XP_001793872.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15] gi|118575175|sp|Q0UY62|DBP3_PHANO RecName: Full=ATP-dependent RNA helicase DBP3 gi|111068913|gb|EAT90033.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15] Length = 592 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 188/337 (55%), Gaps = 14/337 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPASAPLA 77 G+ T +Q A L +D++ A+TGSGKT+AFG+ +L+ D+ A Sbjct: 197 GFTAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRAILSLPKDKRKGIKA--- 253 Query: 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137 + ++PTRELAVQ+ +L L G+ V GGV + + AHIVV TPGRL D Sbjct: 254 VIVSPTRELAVQIYDQLVALAHPAGLSVVCVYGGVPKDPQVAACRK-AHIVVATPGRLND 312 Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197 I ++S+ VVLDEAD MLD GF + I I+ +PKKR+ LMF+AT P++ LA Sbjct: 313 LIGDGSADLSNADYVVLDEADRMLDKGFEEPIRQIISQTPKKRQTLMFTATWPPSVRDLA 372 Query: 198 KNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNA----I 248 + VR+ I + E R + I ++ ++ ++ +L+ Y KN + Sbjct: 373 STFMVSPVRITIGDNQSGELRANVRIKQLVEVLDPHAKEQRLLQLLKQYQSGKNKDDRIL 432 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VFC + R + F+V + G+LSQ++RS +L ++G+ + +ATDVAARG+ Sbjct: 433 VFCLYKKEAMRIENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGL 492 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+P ++LVI+ E+ +HR GRTGRAG++G+++ Sbjct: 493 DIPAVKLVINVTFPLTAEDYVHRIGRTGRAGKEGLAI 529 >gi|124506471|ref|XP_001351833.1| RNA helicase-1 [Plasmodium falciparum 3D7] gi|23504859|emb|CAD51640.1| RNA helicase-1 [Plasmodium falciparum 3D7] Length = 665 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/355 (30%), Positives = 185/355 (52%), Gaps = 9/355 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P+ I + L ++ T +Q L L +D++ A TGSGKT+ F L L L Sbjct: 224 FPKAILKGLRKKNIKKPTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIMKCLEAE 283 Query: 67 DR--FSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVV-AVC-IGGVSVHRER 118 R P+ L I P+RELA Q + E+LY + ++C IGG+S + + Sbjct: 284 IRCKLEEGEGPIGLIICPSRELATQTHNIIKYFCEFLYKDNFPTLRSLCMIGGISAYEQG 343 Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178 R++Q G H++V TPGRL D + K + + + + DEAD ++DLGF +++ LD Sbjct: 344 REIQKGIHMIVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHFSN 403 Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 +R+ L+FSAT+ I AK+ + + +N+ + D+ V + + ++ + Sbjct: 404 QRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFKLSYLLEV 463 Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298 L+ G ++FC + V + L VA+ G L Q ER A+ + R+G+ + Sbjct: 464 LQKTGPP-VLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFREGKKDIL 522 Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353 + TDVA++G+D P +E VI+ ++ + EN +HR GRTGR G+ G++ I +N + Sbjct: 523 VGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQE 577 >gi|320589959|gb|EFX02415.1| eukaryotic initiation factor 4a-12 [Grosmannia clavigera kw1407] Length = 403 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 111/337 (32%), Positives = 185/337 (54%), Gaps = 8/337 (2%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 GY ++VQ + + +D + AQ+G+GKT F +++ + + + AL Sbjct: 48 GYETPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------NTASRETQAL 101 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELA Q+ ++ L V CIGG +V + R L G HIV GTPGR+ D Sbjct: 102 VLSPTRELATQIQSVVKALGDYMNVQCHACIGGTNVGEDIRKLDQGQHIVSGTPGRVADM 161 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L ++K +VLDEADE+L+ GFR+ I + P ++++ SAT+ + + Sbjct: 162 IRRRHLRTRNIKMLVLDEADELLNQGFREQIYEVYRYLPPATQVVVVSATLPQDVLEMTY 221 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + D VR+ + + + + V + + + + ++ A++FC+TR V Sbjct: 222 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 281 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + E F V ++ G++ Q+ER + +Q R RV I+TDV ARGID+ + LVI Sbjct: 282 DWLTDKMRESNFTVSSMHGDMPQKERDSIMQDFRQFNTRVLISTDVWARGIDVQQVSLVI 341 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 + +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 342 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNEDVR 378 >gi|120602237|ref|YP_966637.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562466|gb|ABM28210.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4] Length = 462 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/339 (37%), Positives = 176/339 (51%), Gaps = 7/339 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +DVL A TG+GKT AF L + L+ P Sbjct: 15 ALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPMLQRLMD-----GPRG 69 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL +APTRELA Q + L + + + GGV V + L+ G +VVG PG Sbjct: 70 AVRALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRLRAGVEVVVGCPG 129 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHIR L++S L+ +VLDE D + DLGF D+ +L P + ++FSAT+ A+ Sbjct: 130 RLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPTTCQRMLFSATMPDAV 189 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V V + + S + + V R + LR + +VF T Sbjct: 190 RVLAAEALRQPVTVQVDAVQ-PASTVHHALYPVPAHLRTPLLKTFLRSGPEGSVVVFVRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R R + L F V L G+LSQ+ R AL+ RDGR V +ATDVAARG+D+ + Sbjct: 249 RHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVATDVAARGLDISQV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 V++ ++ S + +HR GRTGRA R G ++ FV P + Sbjct: 309 THVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPAD 347 >gi|156119497|ref|NP_001095245.1| putative ATP-dependent RNA helicase an3 [Xenopus laevis] gi|113825|sp|P24346|DDX3_XENLA RecName: Full=Putative ATP-dependent RNA helicase an3 gi|65060|emb|CAA40605.1| ATP dependent RNA helicase [Xenopus laevis] Length = 697 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/366 (32%), Positives = 191/366 (52%), Gaps = 29/366 (7%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68 Y T VQ+ + + ++D++ AQTGSGKT AF L + S + A EN R Sbjct: 241 YTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQENGR 300 Query: 69 FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + PL+L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H+ Sbjct: 301 YGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHL 360 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183 +V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R+ + Sbjct: 361 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTM 420 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT I LA+++ + + + + +I + V V D+ + ++++L G Sbjct: 421 MFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATG 480 Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 481 KDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 540 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F E Sbjct: 541 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNE 588 Query: 363 ANVSVV 368 N+++ Sbjct: 589 KNINIT 594 >gi|303390992|ref|XP_003073726.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC 50506] gi|303302874|gb|ADM12366.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC 50506] Length = 400 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 123/396 (31%), Positives = 212/396 (53%), Gaps = 24/396 (6%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 NI + +A G T +Q+ ++ L D++ +QTGSGKT+AF L + S LL + Sbjct: 7 NIDDSLVQACQRNGITRPTEIQKQVIPMVLGGNDIIAVSQTGSGKTLAFVLPIVSRLLLK 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 N F L +APTREL+ Q+ E ++ TG+ V + +GG + + + L Sbjct: 67 NRSF------FCLVVAPTRELSSQIA-ECFNMFGSTGLRVCLLVGGTNFNLQANQLSKHP 119 Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 HIVVGTPGR+ +HI + K ++ +VLDEAD + F +D+E I+ S +KR+ L+ Sbjct: 120 HIVVGTPGRIAEHILKTKSFKAERIRKLVLDEADRFFEQDFVEDLETIIRSLREKRQTLL 179 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 F+AT+S I+ L+ + + + S + A+ + +A+V L + Sbjct: 180 FTATMSNEISKLSSSILIKPKTIRVVEGYETVSALKEYYFFTAMKWKSSALVEFLEMNPG 239 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + IVF S + + L++ F AL GELSQ++R ++M ++ + V + TDV Sbjct: 240 ASTIVFVSMCITARVMSLALSKLGFHSEALYGELSQEKREETMRMFKENKFSVLVCTDVG 299 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR 361 +RG+D+ ++LVI+ ++ + ++ +HR GRT RAGR G ++ ++ Q +R E + + Sbjct: 300 SRGLDISHVDLVINFDVPKSGKDYVHRVGRTARAGRAGTAITLVTQYDVEQLQRVEFVLK 359 Query: 362 EANVSVVWEPAP---SVEAIRER------DAQRILQ 388 ++ + E P + E+IRE+ +AQ IL+ Sbjct: 360 KS----LEEFKPVKKNFESIREKVEETIQEAQEILK 391 >gi|311747002|ref|ZP_07720787.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp. PR1] gi|126578701|gb|EAZ82865.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp. PR1] Length = 418 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/373 (31%), Positives = 204/373 (54%), Gaps = 14/373 (3%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64 N + E L G+ T +QE + L KD++ AQTG+GKT AF L + + + + Sbjct: 7 NFETSLQEGLDAMGFEQPTPIQEKAIPVILDNKDLIACAQTGTGKTAAFILPVLNKISKS 66 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDL 121 +D+ + L +APTRELA+Q+ ++++ G+ GG + ++++ L Sbjct: 67 GSDKLN------TLVLAPTRELAIQIDQQIQGFSYFLGISSIPIYGGGDGIVWEQQKKAL 120 Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 + GA IVV TPGRL + G +++S L+ ++LDEAD M+D+GF DDI I++ PK+R+ Sbjct: 121 ETGAEIVVATPGRLIALLAGGKMDLSSLEHLILDEADRMMDMGFSDDILKIVNYLPKERQ 180 Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241 ++FSAT+ I + K+ ++IA + + + V +++ + NIL Sbjct: 181 TILFSATMPSKIRQFSMKILKNPQEISIAI-GKTAAGVTQAMYSVYDGQKEDLVKNILSQ 239 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 + I+F ST+ V K L + F+V A +L Q ER + ++ ++ I T Sbjct: 240 KAYEAVIIFASTKEKVKGLYKKLRKD-FEVEAFHSDLEQIEREKIMSGFKNKSIKILIGT 298 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360 D+ +RGID+ +ELVI+ + S+PE+ +HR GRT RA ++G ++ FV P++ Q + R+ Sbjct: 299 DIISRGIDVVGIELVINFDTPSDPEDYVHRVGRTARADKEGEAITFVNPKD-QYKFARIE 357 Query: 361 REANVSVVWEPAP 373 + + + P P Sbjct: 358 KLIGMEITQIPLP 370 >gi|46580391|ref|YP_011199.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str. Hildenborough] gi|46449808|gb|AAS96458.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str. Hildenborough] gi|311233634|gb|ADP86488.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1] Length = 462 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/339 (37%), Positives = 176/339 (51%), Gaps = 7/339 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL GY T VQ + P L +DVL A TG+GKT AF L + L+ P Sbjct: 15 ALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPMLQRLMD-----GPRG 69 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 A AL +APTRELA Q + L + + + GGV V + L+ G +VVG PG Sbjct: 70 AVRALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRLRAGVEVVVGCPG 129 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DHIR L++S L+ +VLDE D + DLGF D+ +L P + ++FSAT+ A+ Sbjct: 130 RLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPATCQRMLFSATMPDAV 189 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V V + + S + + V R + LR + +VF T Sbjct: 190 RVLAAEALRQPVTVQV-DAVQPASTVHHALYPVPAHLRTPLLKTFLRSGPEGSVVVFVRT 248 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 R R + L F V L G+LSQ+ R AL+ RDGR V +ATDVAARG+D+ + Sbjct: 249 RHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVATDVAARGLDISQV 308 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 V++ ++ S + +HR GRTGRA R G ++ FV P + Sbjct: 309 THVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPAD 347 >gi|19074653|ref|NP_586159.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi GB-M1] gi|74621115|sp|Q8SR63|RRP3_ENCCU RecName: Full=ATP-dependent rRNA helicase RRP3 gi|19069295|emb|CAD25763.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi GB-M1] Length = 400 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 191/345 (55%), Gaps = 8/345 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 I + + + E+G T VQ ++ L DV+ +QTGSGKT+AF L + S LL +N Sbjct: 8 IDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHLLQKN 67 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F L +APTREL+ Q+ E ++ TG+ V + +GG + + + L H Sbjct: 68 RSF------YCLVVAPTRELSSQIA-ECFNMFQATGLRVCLLVGGANFNVQANQLSKRPH 120 Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 +VVGTPGR+ +H+ + K ++ VLDEAD + F +D+E I+ S +KR+ L+F Sbjct: 121 VVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQTLLF 180 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 +AT+S I+ L+ + K + A + + + VA+ +++A+V +L Sbjct: 181 TATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELLEMSQGM 240 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + IVF S + + LA F AL GELSQ++R A++ ++ R V + TD+ + Sbjct: 241 SVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGS 300 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+ ++LVI+ ++ + ++ +HR GRT RAGR G ++ ++ Q Sbjct: 301 RGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQ 345 >gi|294911908|ref|XP_002778095.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983] gi|239886216|gb|EER09890.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983] Length = 463 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 108/328 (32%), Positives = 175/328 (53%), Gaps = 4/328 (1%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 + +QE + L+ +D++ A+TGSGKT AF + + LL D + A +APT Sbjct: 53 SKIQEETIPYALQGRDLIALAETGSGKTGAFAIPIIQKLL---DAAPHRKSTWACVLAPT 109 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142 REL VQ+G++ E L A + A +GG+ + + L HI+V +PGRL DH+ K Sbjct: 110 RELCVQIGQQFEGLGASINLTTATIVGGLDMVTQAMALSKKPHIIVASPGRLVDHLENTK 169 Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202 G ++ +K +V+DEAD +L + F D + I+ S P+ R+ +FSAT++ ++ L + Sbjct: 170 GFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQTFLFSATMTNKVSQLQRASLT 229 Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262 V+ +A + + + V + + +L + ++F T + R Sbjct: 230 RPVKCEVARKFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCLNAQRMAT 289 Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 L V L G+++Q R AL R G V +ATDVAARG+D+P +++VI+ ++ Sbjct: 290 TLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSVLVATDVAARGLDIPSVDVVINFDVP 349 Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 NPE +HR GRT RAGR G SV ++ Q Sbjct: 350 KNPEEYIHRVGRTARAGRTGRSVTLVTQ 377 >gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae] Length = 543 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 109/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P++I +A Y T +Q + P L D++ AQTGSGKT AF + + + L + Sbjct: 131 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 189 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 + + A +APTRELA Q+ + L + GV +GG+++ + RDL H Sbjct: 190 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184 I++ TPGRL DH+ KG ++ LK +V+DEAD +LD+ F ++ IL P ++R + Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT++ I L + + V+ ++++ + + ++V ++ ++ +L Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 363 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 K I+F T+A+ R + + F AL G+L+Q +R +L + + G+ + +ATDVA Sbjct: 364 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVA 423 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 ARG+D+P +++V++ ++ + ++ +HR GRT RAGR G S+ ++ Q Sbjct: 424 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 469 >gi|313200940|ref|YP_004039598.1| dead/deah box helicase domain-containing protein [Methylovorus sp. MP688] gi|312440256|gb|ADQ84362.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688] Length = 541 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 178/335 (53%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L D+L AQTG+GKT F L L L + A Sbjct: 23 AIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLLHLLQGRPGKNK-AG 81 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV ++ + V GGV ++ + L+ I+V TPG Sbjct: 82 QPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLKKPLDILVATPG 141 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI+ +L PK+R+ L+FSAT S I Sbjct: 142 RLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQNLLFSATFSDEI 201 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V +A N ++ LV S + + + ++++ + + ++F T Sbjct: 202 KALADGLLHNPGFVEVARRNTASELVEQTVHLVRQSHKRDMVSHLIKQNNWQQVLIFTRT 261 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R L + A+ G SQ R+ AL +DG V +ATD+AARG+D+ L Sbjct: 262 KHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLVATDIAARGLDIDQL 321 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + E+ +HR GRTGRAG G +V ++ Sbjct: 322 PQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLV 356 >gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii] gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii] Length = 653 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 123/350 (35%), Positives = 189/350 (54%), Gaps = 6/350 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++++GY N T +Q L L +D++ A+TGSGKT AF L + ++ + + Sbjct: 197 AITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQEELGKGE 255 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P+ + APTRELA Q+ E G+ V+ GG+S + ++L+ G IVV TPG Sbjct: 256 GPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELKAGCEIVVATPG 315 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D ++ K L + +VLDEAD M DLGF I I+ R+ L+FSAT+ + Sbjct: 316 RLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRRV 375 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVF 250 TLA+ VRV R + D+ A +VA +D D + + + A + +VF Sbjct: 376 ETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVA-TDADKLQWMLSKLPQMVDAGDVLVF 434 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 ST+ V K L + F+V AL G+ Q R + LQ + G+ V +ATDVAARG+D+ Sbjct: 435 ASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAARGLDI 494 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERL 359 ++ V++ + + + + +HR GRTGRAG K G++ ++ Q R A L Sbjct: 495 KSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVTQKEARFAGDL 544 >gi|221117076|ref|XP_002155771.1| PREDICTED: vasa-related protein CnVAS2 [Hydra magnipapillata] Length = 890 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 181/332 (54%), Gaps = 9/332 (2%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-----NDRFSPASA 74 Y T +Q+ + L ++DV+ A TGSGKT +F L + + L+ E + + Sbjct: 470 YKEPTPIQKYAIPAILAKRDVMACAXTGSGKTASFLLPIITNLMNEGLDNIDSNIDGVAL 529 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 PLA +APTREL VQ+ E + + V GGV+V + L+ G H++V TPGR Sbjct: 530 PLAAILAPTRELVVQLFTEARKFSYNSSLKPVVLYGGVAVAHQADRLRMGCHLLVATPGR 589 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFSATIS 190 L D I+ +N +LK ++LDEAD+M+D+GF IE I++ S P K R LMFSAT Sbjct: 590 LEDFIKRGKVNFQNLKYLILDEADKMIDMGFGPQIEHIIEFSGMPPKGIRNTLMFSATFP 649 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250 I LA + D + + + +D+ + V+ + + + N+L+ G+ +VF Sbjct: 650 DQIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSGTKKRETLENLLQTSGSDRTLVF 709 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 + L++ F +L+ + +Q+ER +AL+ R+G A + +AT VAARG+D+ Sbjct: 710 VEKKRDADFLANFLSQKNFPATSLNADRTQEERESALKDFRNGIAPILVATAVAARGLDI 769 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342 D++ VI+ +L + +HR GRTGR G KG Sbjct: 770 NDVKHVINYDLPKDANEYVHRIGRTGRIGNKG 801 >gi|84385387|ref|ZP_00988419.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus 12B01] gi|84379984|gb|EAP96835.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus 12B01] Length = 443 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 185/337 (54%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + T +Q + + KD+L S++TGSGKT+AF L + L + FS A Sbjct: 16 LKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHKAL-KTKAFS-AKD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P + +APTRELA QV EL + + +GG + + + + L+ +V TPGR Sbjct: 74 PRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKALRKYPRFIVATPGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPAI 193 L DH+ + L + ++ ++LDEAD MLDLGF ++ I +++ +RR LMFSAT+ A Sbjct: 134 LADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAE 193 Query: 194 TTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251 N DA R+++ N QH DI + L D AI++ ++ + ++F Sbjct: 194 VNGIANEMLDAPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVIEEAEYRQVMIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TRA R T L E + VALSG L+Q +R+ + ++ + TDVA+RGID+P Sbjct: 254 ATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDVASRGIDIP 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ++ VI+ ++ + E +HR GRTGRAG KG ++ ++ Sbjct: 314 NVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350 >gi|320167743|gb|EFW44642.1| eIF4AIII protein [Capsaspora owczarzaki ATCC 30864] Length = 413 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/340 (32%), Positives = 188/340 (55%), Gaps = 10/340 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ + + G+ +++Q+ + P L+ +DV+ AQ+G+GKT F ++ + + Sbjct: 46 PELL-QGIYAYGFEQPSAIQQRAIRPILKGRDVIAQAQSGTGKTATFSISALNCV----- 99 Query: 68 RFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 PA+ AL ++PTRELA Q+ + + L GV CIGGVSV + + L G H Sbjct: 100 --EPATRETQALVLSPTRELAQQIQKVVLALGDYMGVQCHACIGGVSVAEDIKKLDYGQH 157 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 +V GTPGR+ D I+ + L ++K ++LDEADEML GF++ I I P ++++ S Sbjct: 158 VVSGTPGRVFDMIKRRHLRTRNIKMLILDEADEMLSRGFKEQIYDIYRYLPPTTQVVIVS 217 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245 AT+ + + + D +R+ + + I + V + + + + ++ Sbjct: 218 ATLPHEVLEITTKFMTDPIRILVKRDELTLEGIKQFFISVEREEWKFDTLCDLYDTLIIT 277 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 A++FC+TR V + +A+ F V + GE+ Q+ER ++ R G RV I TD+ A Sbjct: 278 QAVIFCNTRRKVEFLAEEMAKANFTVSHMHGEMDQKERDTIMKQFRSGATRVLITTDLWA 337 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 RGID+ + LVI+ +L N EN +HR GR+GR GR G+++ Sbjct: 338 RGIDVQQVSLVINYDLPINRENYIHRIGRSGRFGRSGVAI 377 >gi|326534222|dbj|BAJ89461.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 414 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 190/355 (53%), Gaps = 7/355 (1%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D + AL Sbjct: 60 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L GV V C+GG SV ++R L +G H+VVGTPGR+ D Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R + L ++K VLDEADEML GF+D I I P K ++ +FSAT+ P + + Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR 233 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257 + VR+ + + I V V + + + + ++ +++F +TR V Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 293 Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + LVI Sbjct: 294 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 + +L + PEN LHR GR+GR GRKG+++ + + +R + + NV + PA Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPA 408 >gi|326383298|ref|ZP_08204986.1| DEAD/DEAH box helicase domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326198048|gb|EGD55234.1| DEAD/DEAH box helicase domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 526 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 188/360 (52%), Gaps = 18/360 (5%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF-SP 71 AL G ++QE L L D++ A+TG GKT FG+ L L+ AE+ Sbjct: 42 ALEADGKTRTFAIQELTLPLALGGSDLIGQARTGMGKTYGFGVPLLHRLVNAESTGLRGL 101 Query: 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC------------IGGVSVHRERR 119 + P AL I PTREL VQV +LE A GV V + GG ++ Sbjct: 102 DNTPRALIIVPTRELCVQVTEDLE--VAAKGVDVTLTDGTVRPLKITSIYGGRPYEQQIE 159 Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 +LQ G +VVGTPGRL D + L + + +VLDEADEMLDLGF DIE I+ + P Sbjct: 160 ELQTGVDVVVGTPGRLLDLAQQGHLVLGKVGVLVLDEADEMLDLGFLPDIERIMGALPTD 219 Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ ++FSAT+ I TLA+ + + +R A+++ H D+ + Sbjct: 220 RQTMLFSATMPGPIVTLARTFLNRPTHIRAEHANDSAVHERTTQYVYRAHAMDKAELVAR 279 Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 +L+ G ++F T+ + + LAE F V A+ G+L Q R AL R+G+ V Sbjct: 280 VLQSEGRGATMIFTRTKRTAQKVADDLAERGFSVGAVHGDLGQVAREKALNKFREGKIDV 339 Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357 +ATDVAARGID+ D+ VI+ + + + +HR GRTGRAGR G+++ ++ + R E Sbjct: 340 LVATDVAARGIDVDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGIAITLVDWDELHRWE 399 >gi|307825386|ref|ZP_07655605.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] gi|307733561|gb|EFO04419.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum SV96] Length = 451 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 117/362 (32%), Positives = 188/362 (51%), Gaps = 24/362 (6%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDR 68 I +L + G+ + T +Q L LR KD+ AQTG+GKT F LA L+ AE+D Sbjct: 20 ILRSLKDAGFNHCTPIQRQALPLSLRGKDIAGQAQTGTGKTATFLLATFQHLINDAEDDA 79 Query: 69 FSPASA--------------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108 + +A P A+ +APTRELA+Q+ ++ L + +A+ Sbjct: 80 EAQTNADIETEKTAPNVVAKSKQIKYPRAIILAPTRELAIQIHKDALQLGKHLNLKLALI 139 Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 GG ++ L++ I++GTPGR+ D R + ++K V+DEAD M DLGF D Sbjct: 140 YGGTDYQKQLDSLKSNVDIIIGTPGRIIDFYRQNAFTLDNVKVTVMDEADRMFDLGFIKD 199 Query: 169 IEFILD--SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226 I F+L P++R ++FSAT+S +T LA + + V + I +E I A Sbjct: 200 IRFLLRRMPPPEQRLNMLFSATLSYKVTELAYEHMNNPVLIRIETEEVTSKAIQQSAFCP 259 Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286 + + +V IL H + +I+F +T+ R L + ++ ALSG++ Q +R Sbjct: 260 SNEQKIPLLVGILNQHQPQRSIIFVNTKRCAERLDDTLNANGYKTAALSGDVPQDKRQRL 319 Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346 L ++ + + IATDVAARG+ + D+ VI+ +L + E+ +HR GRT R G G+++ Sbjct: 320 LSDFQENKITLLIATDVAARGLHIADVSHVINYDLPQDVEDYVHRIGRTARFGASGVAIS 379 Query: 347 VI 348 I Sbjct: 380 FI 381 >gi|254585603|ref|XP_002498369.1| ZYRO0G08580p [Zygosaccharomyces rouxii] gi|238941263|emb|CAR29436.1| ZYRO0G08580p [Zygosaccharomyces rouxii] Length = 539 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 116/330 (35%), Positives = 190/330 (57%), Gaps = 11/330 (3%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L +DV+ A+TGSGKT AFG+ L++ D + + L I+PTRELA Q L Sbjct: 161 LSGRDVIGVAETGSGKTFAFGVPAIDQLVSNGD--AKRKSVKVLVISPTRELASQTYDNL 218 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 L K G+ GGV +R L+N + +VV TPGRL D I + +++S ++ +VL Sbjct: 219 IILTNKVGLECCCVYGGVPKQEQRNQLRN-SQVVVATPGRLLDLINEQSVDLSQVQYLVL 277 Query: 155 DEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213 DEAD ML+ GF +DI+ I++ ++ + R+ LMF+AT + LA + +D V+V+I + + Sbjct: 278 DEADRMLEKGFEEDIKNIINQTNSRDRQTLMFTATWPKEVRELASTFMRDPVKVSIGNRD 337 Query: 214 RQHSDIDYRAVLVALSDR--DNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAE 266 ++ ++ + R D ++ +LR + GAK ++F + SR L Sbjct: 338 ELSANKRITQIVEVIEPRQKDRKLLELLRKYQSGAKKDDKVLIFALYKKEASRVENNLKY 397 Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326 + + V A+ G+LSQQ+R++AL + G++ + +ATDVAARG+D+P+++ VI+ E Sbjct: 398 NGYDVAAIHGDLSQQQRTSALNDFKAGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVE 457 Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 + +HR GRTGRAG+ G + + N + A Sbjct: 458 DYVHRIGRTGRAGQTGTAHTLFTDNEKHLA 487 >gi|259483726|tpe|CBF79353.1| TPA: ATP-dependent RNA helicase dbp3 (EC 3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5AWA6] [Aspergillus nidulans FGSC A4] Length = 413 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 181/324 (55%), Gaps = 10/324 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ + T++Q A +DV+ A+TGSGKT+AFGL +L + + PLA+ Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTK-QKSCRPLAV 150 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 I+PTRELA+Q+ +L K + VA GGV +R L++ A +VV TPGRL D Sbjct: 151 VISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDL 209 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLA 197 L++ +K +VLDEAD MLD GF DI+ I+ P KR+ +MF+AT P + LA Sbjct: 210 QNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLA 269 Query: 198 KNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIV-F 250 + V V I +++ R +S I +V +++ +V IL H G + ++ F Sbjct: 270 STFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAF 329 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 C + R ++L F+V + G+LSQQER +L+ + G A V +ATDVAARG+D+ Sbjct: 330 CLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDI 389 Query: 311 PDLELVIHAELSSNPENLLHRSGR 334 P ++LV++ E+ +HR GR Sbjct: 390 PHVKLVVNVTFPLTVEDYVHRIGR 413 >gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950] Length = 452 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 127/343 (37%), Positives = 181/343 (52%), Gaps = 8/343 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 AL+E+G + ++QE L L D++ A+TG GKT AFG+ L + + Sbjct: 24 ALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITSGTAARPLNG 83 Query: 74 APLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHI 127 P AL + PTREL +QV +L + L A G + V GG + L+ GA + Sbjct: 84 TPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYEAQIEALRAGADV 143 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 VVGTPGRL D + L + L +VLDEADEMLDLGF DIE IL P R+ ++FSA Sbjct: 144 VVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPVDRQSMLFSA 203 Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 T+ I TLA+ + Q +R H A D+ + IL+ G Sbjct: 204 TMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYAYRAHALDKVELVSRILQAEGRG 263 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 ++F T+ + + LAE F V A+ G+L Q R AL+ R G V +ATDVAA Sbjct: 264 ATMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDVLVATDVAA 323 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 RGID+ D+ VI+ ++ + + +HR GRTGRAG+ G++V ++ Sbjct: 324 RGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLV 366 >gi|90425187|ref|YP_533557.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] gi|90107201|gb|ABD89238.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18] Length = 481 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 177/340 (52%), Gaps = 1/340 (0%) Query: 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 + I AL E Y+ T +Q + + +DV+ AQTG+GKT +F L + LL + Sbjct: 17 EAITRALKEENYLTPTPIQAQTIPLAMAGRDVVGIAQTGTGKTASFALPIIHRLLENRIK 76 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 P + + L ++PTREL+ Q+ + A+ IGGV + R+ R + G ++ Sbjct: 77 PQPKTCRV-LVLSPTRELSGQILESFNAYGRHVRLTSALAIGGVPMGRQVRSIMPGLDVL 135 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D ++ L ++ ++ +VLDEAD MLD+GF +DI I+ P KR+ L FSAT Sbjct: 136 VATPGRLLDLVQTNALKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSAT 195 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA +D RV + I R + V S + + IL+ A+ Sbjct: 196 MPKDIADLADQMLRDPARVAVTPVASTVERITQRIIQVDHSAKPTLLAQILKQENVNRAL 255 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + K LA A+ G SQ R L R G R +ATD+AARGI Sbjct: 256 IFTRTKHGADKVVKGLARAGITADAIHGNKSQNHRERVLAAFRAGEIRTLVATDIAARGI 315 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 D+ + V++ +L + PE +HR GRT RAG +G+++ ++ Sbjct: 316 DVDGITHVVNFDLPNIPETYVHRIGRTARAGAEGIAISLV 355 >gi|168026095|ref|XP_001765568.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683206|gb|EDQ69618.1| predicted protein [Physcomitrella patens subsp. patens] Length = 413 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 15/360 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D AL Sbjct: 59 GFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATF----CSGILQQLD--YQLLECQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R L +K VLDEADEML GF+D I I P+K ++ +FSAT+ P + + Sbjct: 173 LRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254 + V++ + + I V V DR+ + + ++ +++F +TR Sbjct: 233 KFMNKPVKILVKRDELTLEGIKQFYVNV---DREEWKLDTLCDLYETLAITQSVIFINTR 289 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + Sbjct: 290 RKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 LVI+ +L + PEN LHR GR+GR GRKG+++ + + +R + + R N V E PS Sbjct: 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQDIQRFYNTVV--EELPS 407 >gi|170727839|ref|YP_001761865.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813186|gb|ACA87770.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 428 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 127/383 (33%), Positives = 200/383 (52%), Gaps = 22/383 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++ +I +A+ GY LT VQ ++ + D++ A+TG+GKT AF L L LL Sbjct: 7 DLSPLILDAVEVCGYQQLTQVQSKVIPVAVTGCDLMACAETGTGKTAAFALPLLQKLL-- 64 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 D F SA L + PTRELA+QV + T + GG +++ +R+ L G Sbjct: 65 -DEFLDRSALRGLILTPTRELAIQVADNISRYSQFTSLKTLAVYGGANMNPQRKALNAGV 123 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I+V TPGRL D I GL++S + ++V+DEAD MLD+GF DIE + ++ F Sbjct: 124 DILVATPGRLFDFIGQHGLDLSSVTSLVIDEADRMLDMGFVRDIERVKGLVARQHVTHFF 183 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT S + LA+ D +N+A+ ++ S ++ LV + + ++ + + Sbjct: 184 SATYSDDVKCLAQKMLCDPTWINVAT-SKSASSVEQEVYLVDKRRKAELLSELVGRNNWQ 242 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 +VF S++ S K L + G+ +Q R+ AL+ + G RV +ATDVAA Sbjct: 243 QVLVFASSKESAEHIQKELKLDGLKSAVFHGDKTQGARNRALEEFKSGALRVLVATDVAA 302 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364 RG+D+ L LV++ EL + ++ +HR GRTGRAG G ++ FV P + E++ E Sbjct: 303 RGLDIHALPLVVNIELPFDAQDYIHRIGRTGRAGLTGHAISFVCPSD-----EKMLEE-- 355 Query: 365 VSVVWEPAPSVEAIRERDAQRIL 387 +EA+ ER RI+ Sbjct: 356 ----------IEALIERKLPRIV 368 >gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori] gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori] Length = 539 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 128/395 (32%), Positives = 208/395 (52%), Gaps = 22/395 (5%) Query: 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58 ++ FE N P + + + GY T +Q + K+++ AQTGSGKT+A+ L Sbjct: 106 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP- 164 Query: 59 ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 A + P+AL +APTRELA Q+ +++ + T V C+ G + RE+ Sbjct: 165 AIVHINNQPPIRRGDGPIALVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAPKREQ 223 Query: 119 -RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 RDL+ G IV+ TPGRL D + N+ +VLDEAD MLD+GF I I++ Sbjct: 224 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 283 Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 R+ LM+SAT + LA++Y D +++NI S + + V + +N Sbjct: 284 PDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLN 343 Query: 238 IL-------RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 +L + GAK I+F T+ ++ + + + V + G+ +QQER L Sbjct: 344 VLLQEIGQSQEPGAK-TIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 402 Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349 ++GRA + +ATDVAARG+D+ ++ VI+ + ++ E+ +HR GRTGR+ KG S F P Sbjct: 403 KEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 462 Query: 350 QNMQRRAERL---FREANVSVVWEPAPSVEAIRER 381 N R+A+ L +EAN + +P ++++ +R Sbjct: 463 SN-SRQAKDLVSVLQEANQII----SPQLQSMADR 492 >gi|328772390|gb|EGF82428.1| hypothetical protein BATDEDRAFT_29496 [Batrachochytrium dendrobatidis JAM81] Length = 508 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 125/352 (35%), Positives = 195/352 (55%), Gaps = 18/352 (5%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG---LALASTL 62 N P + LSE + + +Q P L +D++ A TGSGKT+AFG L Sbjct: 92 NFPTKLHSILSE--FPAPSFIQSVTWPPILNGRDLVGIAATGSGKTLAFGVPALLHIQNC 149 Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121 LA N PL L ++PTRELA+Q+ + GV +VCI GG+ +++ L Sbjct: 150 LALNTL--QKGKPLTLVLSPTRELAMQIQDQFVQFGQAIGVK-SVCIYGGMPKWEQKKLL 206 Query: 122 QNGAHIVVGTPGRLCDHIR--GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-- 177 Q G H++V TPGRL D + ++S +K +VLDEAD MLD+GF + I I+ P Sbjct: 207 QQGMHVIVATPGRLIDLFEEDDRTCDLSQVKYLVLDEADRMLDIGFEEAIRKIIKKLPTA 266 Query: 178 -KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAI 235 + R+ +MFSAT +I +A +Y + V+V + S + + I+ R ++ ++ + Sbjct: 267 AQGRQTVMFSATWPQSIQRMAMSYLNNPVKVTVGSTDLSANISIEQRVEVLDPFAKETRL 326 Query: 236 VNILR-YHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 + +LR YH ++ ++F + SR + L + + V ++ G+LSQ +R+ A+ R Sbjct: 327 LQLLRDYHKSRTNRILIFALYKKEASRLDQFLKRNGYNVASIHGDLSQVQRTAAIDGFRS 386 Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344 G+ + IATDVAARGID+P++E VI+ E+ HR GRTGRAG+ G+S Sbjct: 387 GKIPLLIATDVAARGIDIPNVEYVINVTFPLTVEDYCHRIGRTGRAGKTGIS 438 >gi|91206542|sp|Q4PHU9|DBP2_USTMA RecName: Full=ATP-dependent RNA helicase DBP2 Length = 552 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 186/363 (51%), Gaps = 7/363 (1%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 P I + + G+ +++Q L +D++ A+TGSGKT+ F L A + Sbjct: 137 FPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALP-AMVHINAQ 195 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 P P+AL +APTRELA Q+ E + + GGV + RDLQ GA Sbjct: 196 PLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDLQRGAE 255 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I + TPGRL D + N+ + +V+DEAD MLD+GF I IL R+ LMFS Sbjct: 256 ICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTLMFS 315 Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 AT + LA ++ + +VNI S E + ++ + ++ ++ L A+ Sbjct: 316 ATWPKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIGHLETISAE 375 Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 N I+F ST+ TK L + + +A+ G+ QQER L + GR+ + +AT V Sbjct: 376 NGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAV 435 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAER--LF 360 A+RG+D+ D+ VI+ + +N E+ +H+ GRTGRAGR G + + P+N + E + Sbjct: 436 ASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSARELIGIL 495 Query: 361 REA 363 REA Sbjct: 496 REA 498 >gi|145352838|ref|XP_001420742.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580977|gb|ABO99035.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 413 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 131/380 (34%), Positives = 199/380 (52%), Gaps = 17/380 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+ + +A+ GY T++Q L+ D++ A+TGSGKTVAF L +AE Sbjct: 10 PKPLLDAVKRAGYTEPTAIQSQSWPIALQGYDMISVAKTGSGKTVAF-LFPGLMHIAERG 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 A P+ LA+APTRELA Q+ E + GV GG R+ + L+N I Sbjct: 69 NGRNARGPMMLALAPTRELATQIQEECMKFGSSCGVGSVCLYGGAPKGRQLQQLRNRPQI 128 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 + TPGRL D + + +++S VVLDEAD MLD+GF I IL P R+ L F+A Sbjct: 129 CIATPGRLNDLLESRMVDMSSATYVVLDEADRMLDMGFEPQIRKILQHVPVDRQTLFFTA 188 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRY--HG 243 T A+ +A + ++VNI ++ ++ D + S +++ ++ IL G Sbjct: 189 TWPKAVIRVATAILTNPIQVNIGDTDQLVANKDITQTIEVCSGFEKEKRLMEILNNPPEG 248 Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 A+VFCST+ + + + +L ++ G+ Q+ER L R GR V +AT Sbjct: 249 CDPLKALVFCSTKRMCDQLGRSVG-NLAGII--HGDKEQRERDWILNQFRQGRTPVLVAT 305 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAER 358 DVAARG+D+ D LVI+ + + E+ +HR GRTGRAG+KG + I NM R+ Sbjct: 306 DVAARGLDVKDCNLVINYDFPNQIEDYVHRIGRTGRAGKKGWAFSFIDGGEGNMARKLIP 365 Query: 359 LFREANVSVVWEPAPSVEAI 378 + R+AN V +P +E + Sbjct: 366 ILRDANQIV----SPEIEEM 381 >gi|108799132|ref|YP_639329.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119868247|ref|YP_938199.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. KMS] gi|126434738|ref|YP_001070429.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. JLS] gi|108769551|gb|ABG08273.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119694336|gb|ABL91409.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS] gi|126234538|gb|ABN97938.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS] Length = 444 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 192/368 (52%), Gaps = 8/368 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L RG + +Q A L L +DVL +TGSGKT+AF L L S L A+ R S S Sbjct: 20 LENRGIDSPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSLPLVSRL-ADAKRRS--SR 76 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P L +APTRELA Q+ LE L A + VA GGVS + + L+ G IVV PGR Sbjct: 77 PSGLVLAPTRELATQITAVLEPLAAAYDLKVATIFGGVSQNPQASALRAGVDIVVACPGR 136 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D +R + +++ ++ VLDEAD M DLGF + IL ++P + L+FSAT+ + Sbjct: 137 LEDLMRQRIISLDSVEITVLDEADHMADLGFLPGVTRILAATPAGGQRLLFSATLDNGVD 196 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 L + + ++ V ++ N + + VA + A+V+ L G I+F T+ Sbjct: 197 KLVRRFLREPVTHSVDEVNAPPPAMTHHVFHVAGAHEKKALVHTL-AAGTGRRILFMRTK 255 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 + + L E V L G LSQ R L G A+V +ATD+AARG+ + ++E Sbjct: 256 HQARKLARQLTESGVPSVDLHGNLSQNARERNLAAFSAGDAKVLVATDIAARGVHVDEVE 315 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV----VWE 370 LV+H + + LHRSGRT RAG G V V+ +R L R A ++V V Sbjct: 316 LVVHVDPPVEHKAYLHRSGRTARAGSAGDVVTVVLPEERRDTAALLRRAGINVAPQQVGA 375 Query: 371 PAPSVEAI 378 +PSV A+ Sbjct: 376 DSPSVAAL 383 >gi|91223278|ref|ZP_01258544.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio alginolyticus 12G01] gi|91192091|gb|EAS78354.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio alginolyticus 12G01] Length = 443 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 185/337 (54%), Gaps = 5/337 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L + T +Q+ + + KD+L S++TGSGKT+AF L + L + FS A Sbjct: 16 LKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-AKD 73 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 P A+ +APTRELA QV EL + A A+ +GG + + + + L+ +V TPGR Sbjct: 74 PRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPKFIVATPGR 133 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192 L DH+ + L + L+ ++LDEAD MLDLGF ++ I ++ +RR LMFSAT+ A Sbjct: 134 LADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAD 193 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251 + +A R+ I N +H DI + L D AI++ +L + I+F Sbjct: 194 VNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAEYRQVIIFT 253 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 +TR R T+ L E + VALSG L+Q +R+ + ++ + TDVA+RG+D+ Sbjct: 254 ATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIA 313 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 + VI+ ++ + E +HR GRTGRAG KG ++ ++ Sbjct: 314 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350 >gi|51244750|ref|YP_064634.1| ATP-dependent RNA helicase (RhlE) [Desulfotalea psychrophila LSv54] gi|50875787|emb|CAG35627.1| related to ATP-dependent RNA helicase (RhlE) [Desulfotalea psychrophila LSv54] Length = 498 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 113/342 (33%), Positives = 183/342 (53%), Gaps = 3/342 (0%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 IP + +++ + T +QE L L KD++ A TG+GKT F + + + LLA+ Sbjct: 101 IPLPLMHGIADLKFEYCTPIQEQSLEAVLAGKDLIGKANTGTGKTAVFLVGVMARLLADK 160 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-A 125 P AL +APTREL +Q+ ++ + L TGV GG ++ L+ G Sbjct: 161 KGGLGKRTPRALILAPTRELVMQIVKDAKKLGRYTGVNADAVYGGAEYEKQMELLKRGKT 220 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR--RML 183 IVV TPGRL D + +N + + +V+DEAD MLD+GF D+ I+ PKKR + L Sbjct: 221 DIVVATPGRLIDFHNKRLVNFDNCQTLVIDEADRMLDMGFIPDVRRIVSWMPKKRDRQTL 280 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSATIS + L+ + D V ++ ++ + LV ++ N + N+++ + Sbjct: 281 MFSATISSDVNNLSAQWCVDPEVVEAEADQVTTDTVEQKVYLVTAEEKYNVLYNLIKENS 340 Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 + ++F + ++ + L + + LSG++ Q +R + L+ R G+ +V +ATDV Sbjct: 341 DERIMIFANMKSETRKLADRLKRNSIDCLLLSGDVPQNKRQSRLESFRTGKVKVLVATDV 400 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 A RGI + + V++ L PE+ +HR GRTGRAG G SV Sbjct: 401 AGRGIHIDGISYVVNYTLPYEPEDYVHRIGRTGRAGLAGKSV 442 >gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864] Length = 594 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 106/345 (30%), Positives = 192/345 (55%), Gaps = 12/345 (3%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66 +P ++ EA S G+ T +Q + L +D++ A+TGSGKT +F L + LL + Sbjct: 154 VPSLV-EACSRMGFKAPTPIQRQSIPVALTGRDIIGLAETGSGKTASFALPVLQKLLEKP 212 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 AL + PTRELA Q+ + E L + GV V +GG+ + + L H Sbjct: 213 QPL------FALILTPTRELAYQISEQFEALGSTIGVKCCVIVGGMDMTTQAIALSKKPH 266 Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 I++ TPGR+ DH+ KG +LK +++DEAD +L++ F ++++ IL + PK+R ++ Sbjct: 267 ILIATPGRIVDHLENTKG----YLKFLIMDEADRILNMDFEEEVDKILKAIPKERNTYLY 322 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245 SAT++ + L + ++ V++ +A++ + + + + + +D + L Sbjct: 323 SATMTSKVAKLQRASLRNPVKIEVATKYQTVGTLVQQYLFIPARFKDCYLTYALNQLAGN 382 Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 + I+F T A+ R +L F + L G+L+Q +R AL ++ + +ATDVA+ Sbjct: 383 STIIFTMTCANAQRVALMLRNLGFPAIPLHGQLTQPKRLGALNKFKEQSRSILVATDVAS 442 Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 RG+D+P ++LVI+ ++ ++ ++ +HR GRT RAGR G S+ ++ Q Sbjct: 443 RGLDIPHVDLVINYDIPTHSKDYIHRVGRTARAGRSGRSITMVTQ 487 >gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586] gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586] Length = 421 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 191/379 (50%), Gaps = 10/379 (2%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 LS+ G VN T +Q+ + L+ KDVL AQTG+GKT AFGL L + + S Sbjct: 20 TLSDLGIVNPTPIQQQAIPYVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWVREENS 79 Query: 74 APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + AL + PTRELA QV ++ T + + GG S+ + L+ G I++ TP Sbjct: 80 KEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 GRL DH K L + ++ +VLDEAD MLD+GF D++ +L R+ L FSAT Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199 Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252 I +A +D V + N + V + + ++ + +VF Sbjct: 200 IKAVAYRIMRDPAEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259 Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 TR + L + V+++G+ SQ R AL + G+ R IATDVAARG+D+ Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319 Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368 LE V++ ++ E+ +HR GRTGRAG G++V ++ + + E + R N + Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLVGLAVSLLSHDETPQLEAIERLLNTRLPQEWL 379 Query: 369 --WEPAPSVEAIRERDAQR 385 +EP+P V RE ++ R Sbjct: 380 KGFEPSPEV---REENSPR 395 >gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B] gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B] Length = 408 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 11/349 (3%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 T VQE + L KD++ AQTG+GKT A+ L + + L + P A A+ +APT Sbjct: 7 TPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL---SKGCHPTDAVNAVIMAPT 63 Query: 84 RELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139 RELA Q+ ++++ V AV + G++ +++R L+ GA IV+ TPGRL HI Sbjct: 64 RELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIVIATPGRLLSHI 123 Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 + +++S + VLDEAD MLD+GF DDI + P + +MFSAT+ P I TLAK Sbjct: 124 KLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKIRTLAKT 183 Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259 KD V IA +R I A + + + ++ + I+F S++ V Sbjct: 184 ILKDPEEVKIAI-SRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKE 242 Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 L F V A+ +L Q +R ++ + G + +ATDV ARGID+ D++LV++ Sbjct: 243 LASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIKLVVNF 302 Query: 320 ELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL--FREANV 365 ++ +PE+ +HR GRT R +G+++ + + Q + +R+ F E V Sbjct: 303 DIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEV 351 >gi|168063959|ref|XP_001783934.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664528|gb|EDQ51244.1| predicted protein [Physcomitrella patens subsp. patens] Length = 413 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 15/360 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + P + DV+ AQ+G+GKT F S +L + D AL Sbjct: 59 GFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATF----CSGILQQLD--YQLLECQAL 112 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 +APTRELA Q+ + + L V V C+GG SV ++R LQ G H+VVGTPGR+ D Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDM 172 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 +R L +K VLDEADEML GF+D I I P+K ++ +FSAT+ P + + Sbjct: 173 LRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGVFSATMPPEALEITR 232 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254 + V++ + + I V V DR+ + + ++ +++F +TR Sbjct: 233 KFMNKPVKILVKRDELTLEGIKQFYVNV---DREEWKLDTLCDLYETLAITQSVIFINTR 289 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + V A G++ Q R ++ R G +RV I TD+ ARGID+ + Sbjct: 290 RKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 LVI+ +L + PEN LHR GR+GR GRKG+++ + + +R + + R N V E PS Sbjct: 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQDIQRFYN--TVIEELPS 407 >gi|62740097|gb|AAH94097.1| Unknown (protein for MGC:115016) [Xenopus laevis] Length = 695 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/366 (32%), Positives = 191/366 (52%), Gaps = 29/366 (7%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68 Y T VQ+ + + ++D++ AQTGSGKT AF L + S + A EN R Sbjct: 239 YTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQENGR 298 Query: 69 FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 + PL+L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H+ Sbjct: 299 YGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHL 358 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183 +V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R+ + Sbjct: 359 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTM 418 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243 MFSAT I LA+++ + + + + +I + V V D+ + ++++L G Sbjct: 419 MFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATG 478 Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 479 KDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 538 Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F E Sbjct: 539 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNE 586 Query: 363 ANVSVV 368 N+++ Sbjct: 587 KNINIT 592 >gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii] gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii] Length = 653 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 123/350 (35%), Positives = 189/350 (54%), Gaps = 6/350 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A++++GY N T +Q L L +D++ A+TGSGKT AF L + ++ + + Sbjct: 197 AITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQEELGKGE 255 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P+ + APTRELA Q+ E G+ V+ GG+S + ++L+ G IVV TPG Sbjct: 256 GPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELKAGCEIVVATPG 315 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D ++ K L + +VLDEAD M DLGF I I+ R+ L+FSAT+ + Sbjct: 316 RLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRRV 375 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVF 250 TLA+ VRV R + D+ A +VA +D D + + + A + +VF Sbjct: 376 ETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVA-TDADKLQWMLSKLPQMVDAGDVLVF 434 Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 ST+ V K L + F+V AL G+ Q R + LQ + G+ V +ATDVAARG+D+ Sbjct: 435 ASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAARGLDI 494 Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERL 359 ++ V++ + + + + +HR GRTGRAG K G++ ++ Q R A L Sbjct: 495 KSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVAQKEARFAGDL 544 >gi|303319503|ref|XP_003069751.1| Eukaryotic translation initiation factor, putative [Coccidioides posadasii C735 delta SOWgp] gi|142985565|sp|Q1DTB3|FAL1_COCIM RecName: Full=ATP-dependent RNA helicase FAL1 gi|240109437|gb|EER27606.1| Eukaryotic translation initiation factor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040787|gb|EFW22720.1| ATP-dependent RNA helicase FAL1 [Coccidioides posadasii str. Silveira] Length = 399 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 112/340 (32%), Positives = 188/340 (55%), Gaps = 14/340 (4%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75 G+ + +++Q + + +D + AQ+G+GKT F +++ T L E Sbjct: 44 GFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTALRETQ-------- 95 Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL ++PTRELA Q+ + + V CIGG +V + R L +G H+V GTPGR+ Sbjct: 96 -ALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQHVVSGTPGRV 154 Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 D IR + L H+K +VLDEAD++L GFR+ I + P ++++ SAT+ + + Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPATQVVVLSATLPYDVLS 214 Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254 + + D VR+ + + + + V + + + + ++ A++FC+TR Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 V T + E F V ++ GE+ Q+ER + +Q R G +RV I+TDV ARGID+ + Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353 LVI+ +L SN EN +HR GR+GR GRKG+++ FV ++++ Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374 >gi|242042443|ref|XP_002468616.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor] gi|241922470|gb|EER95614.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor] Length = 454 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 111/339 (32%), Positives = 185/339 (54%), Gaps = 4/339 (1%) Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72 EA G+ T +Q + L+ KD++ AQTGSGKT AF L + LL+ Sbjct: 37 EACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQELLSNR---QAE 93 Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 + A ++PTRELA+Q+ + E L + G+ +V +GGV ++ + HIVVGTP Sbjct: 94 QSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTP 153 Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 GRL DH+ KG ++ +K +VLDEAD++L++ F ++ IL PK RR +FSAT++ Sbjct: 154 GRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILREIPKDRRTFLFSATMTK 213 Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251 + L + ++ +V AS+ + V D+D ++++L ++F Sbjct: 214 KVNKLQRACLRNPAKVEAASKYSTVDSLKQEFYFVPADDKDCYLLHVLNERQDSMIMIFV 273 Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 T S +L + +++SG++SQ +R AL + + I TDVA+RG+D+ Sbjct: 274 RTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQ 333 Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 +++VI+ ++ N ++ +HR GRT RAGR G +V ++ Q Sbjct: 334 GVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQ 372 >gi|4104820|gb|AAD02177.1| RNA helicase [Anabaena variabilis] Length = 425 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 181/342 (52%), Gaps = 7/342 (2%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL----ASTLLAEN 66 I A++E GY T +Q + L +D+L AQTG+GKT +F L L +L Sbjct: 12 IINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLLHYYPKIVLKAL 71 Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 F A L + PTRELA QV + + V GGVS++ +++ L+ Sbjct: 72 QCFLTIRA---LILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKQRLKGRVD 128 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 I+V TPGRL DH++ +N+S ++ +VLDEAD MLD+GF DI IL PK+R+ L+F Sbjct: 129 ILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLLFF 188 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT S I LA + +A N + + + + + + +++R Sbjct: 189 ATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAHLIRKDNWYQ 248 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ R K L Q +A+ G SQ R++AL ++G +V +ATD+AAR Sbjct: 249 VLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLVATDIAAR 308 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ +L V++ +L PE+ +HR GRTGRAG G +V ++ Sbjct: 309 GLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLV 350 >gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii] Length = 679 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 188/341 (55%), Gaps = 17/341 (4%) Query: 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPL 76 Y+ T VQ+ + LR +D++ AQTGSGKT AF L + + ++ FS A P Sbjct: 320 YLKPTPVQKYSIPIILRGRDLMSCAQTGSGKTAAFLLPVLTGMIKSGLSGSSFSEAVEPQ 379 Query: 77 ALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135 AL I PTRELA+Q+ E L++ Y+ T + VC GG SV + R+L G +++V TPGRL Sbjct: 380 ALVITPTRELALQIHHEALKFAYS-TILRPVVCYGGTSVQHQLRELSRGCNLLVATPGRL 438 Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATIS 190 D + GKG + + LK ++LDEAD MLD+GF +I ++ S S + R+ LMFSAT Sbjct: 439 LDFV-GKGKVGLGKLKYLILDEADRMLDMGFEPEIRRLVASPNMPSKEDRQTLMFSATFP 497 Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL-----RYHGA 244 I LA ++ D + + + DI+ V + + + ++ IL + G Sbjct: 498 EEIQKLAGDFLNDYIFLTVGRVGGTTPDIEQSVVQMESQFQKKEKLMEILIDVISSFPGT 557 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VF T+ S L++ F ++ G+ Q+ER AL + G V +AT VA Sbjct: 558 EKVVVFVETKRSADFVASYLSQSGFPTTSIHGDRLQREREEALSCFKRGETPVLVATSVA 617 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+D+P ++ V++ +L N + +HR GRTGR G G +V Sbjct: 618 ARGLDIPGVKHVVNFDLPDNIDEYVHRIGRTGRVGNIGKAV 658 >gi|89896500|ref|YP_519987.1| hypothetical protein DSY3754 [Desulfitobacterium hafniense Y51] gi|89335948|dbj|BAE85543.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 478 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 177/337 (52%), Gaps = 4/337 (1%) Query: 11 IGEALSERGYVNLTSVQ-EAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDR 68 I +AL+ +GY T +Q EAI P L E D+L AQTG+GKT AF + + +L Sbjct: 65 IQKALAAQGYSEATPIQAEAI--PHLLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGL 122 Query: 69 FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128 AL +APTRELA Q+ + V GGV + R L+ G I+ Sbjct: 123 LKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDIL 182 Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 V TPGRL D I +++SH++ VLDE D+MLD+G D++ I+ P++R+ ++FSAT Sbjct: 183 VATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSAT 242 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 + I LA K V++ + E I+ V +++ + L+ + + + Sbjct: 243 MPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLKNNEYDSVL 302 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 VF T+ + K L + F VA+ G SQ R AL + + R+ +ATD+AARG+ Sbjct: 303 VFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVATDIAARGL 362 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+ +L VI+ L PE +HR GRTGRAG G ++ Sbjct: 363 DIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAI 399 >gi|127513728|ref|YP_001094925.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126639023|gb|ABO24666.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 408 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 181/341 (53%), Gaps = 2/341 (0%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P + +AL + T +Q + L D++ SAQTG+GKT AF L + + L+ Sbjct: 7 SLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPILAKLMGL 66 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 P AL + PTRELA+QV + + T + + GGVS+ + + L G Sbjct: 67 AQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQQLAAGV 126 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 ++V TPGRL D R + + +V DEAD MLD+GF D+I ++ P +R+ L+F Sbjct: 127 DLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSERQTLLF 186 Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-A 244 SAT+ + L+ + K R+ ++ +N D++ R V S+R A+++ L G Sbjct: 187 SATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVD-SERKFALLSHLINKGDW 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VF + + + L E A G+L Q R L R G +V +ATDVA Sbjct: 246 QRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLVATDVA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARGID+ L+ V++ EL ++ +HR GRTGRAG++G++V Sbjct: 306 ARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAV 346 >gi|156053564|ref|XP_001592708.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980] gi|160380639|sp|A7EJY3|DED1_SCLS1 RecName: Full=ATP-dependent RNA helicase ded1 gi|154703410|gb|EDO03149.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980 UF-70] Length = 678 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 112/337 (33%), Positives = 181/337 (53%), Gaps = 15/337 (4%) Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------- 74 T VQ+ + + +D++ AQTGSGKT F + S PA+A Sbjct: 210 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPIPANAAGSFGRTRK 269 Query: 75 --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P +L +APTREL Q+ E ++ V V GG + + R ++ G ++V TP Sbjct: 270 AYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATP 329 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSAT 188 GRL D I +++ ++K +VLDEAD MLD+GF I I++ + R+ LMFSAT Sbjct: 330 GRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSAT 389 Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248 I LA+++ KD V +++ +I + V D+ + +++IL HGA + Sbjct: 390 FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTL 449 Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 +F T+ + L F ++ G+ +Q+ER AL+M R+GR + +AT VAARG+ Sbjct: 450 IFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGL 509 Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 D+P++ V++ +L ++ ++ +HR GRTGRAG G+S Sbjct: 510 DIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 546 >gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O] gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O] Length = 509 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 182/339 (53%), Gaps = 4/339 (1%) Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70 I +A+ E+GY + +Q + L KDV+ +AQTG+GKT F L + L A+ R Sbjct: 12 ILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL-AKGPRVR 70 Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129 A+ AL + PTRELA QV +E ++Y++ + AV GGV ++ + L+ GA ++V Sbjct: 71 -ANHIRALILTPTRELAAQV-QENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGADVLV 128 Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 TPGRL D + L+ ++LDEAD MLD+GF DI IL P KR+ L+FSAT Sbjct: 129 ATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATF 188 Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249 S I LAK + + +++ N ++ + + + ++ + +V Sbjct: 189 SDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLINDGDWRQVLV 248 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F T+ +R L + A+ G SQ R+ AL + G RV +ATD+AARGID Sbjct: 249 FTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGID 308 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 +P L V++ EL E+ +HR GRTGRAG G ++ ++ Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLV 347 >gi|323497478|ref|ZP_08102496.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] gi|323317561|gb|EGA70554.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326] Length = 426 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 113/341 (33%), Positives = 185/341 (54%), Gaps = 1/341 (0%) Query: 5 ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64 +N I +AL+E GY LT VQ+ + + D+L +AQTG+GKT AF L + +L Sbjct: 6 QNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIVQNIL- 64 Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124 +N + A+ +APTRELA Q+ ++ T + GG + +++ L+ G Sbjct: 65 DNAKPRQRHQARAVILAPTRELAAQIATNIQDYTKYTEIKTVAIYGGAKMSSQQKALEAG 124 Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 ++V TPGRL +H+ +++ +L+ +V DEAD MLD+GF IE I+ K + ++ Sbjct: 125 VDVLVATPGRLIEHMDLNNVSLVNLEFLVFDEADRMLDMGFISAIENIMSGVATKPQTML 184 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT S + TLA + RV++A EN + + V + + ++ Sbjct: 185 FSATFSAQMNTLATKILRQPKRVSVARENATAETVAHVVYPVEQERKRELLSELIGRKNW 244 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 + +VF + + + + K L + V G+ +Q R AL + G+ARV IATDVA Sbjct: 245 QQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARVMIATDVA 304 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 ARG+D+ +L V++ ++ E+ +HR GRTGRAG++G +V Sbjct: 305 ARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAV 345 >gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4] gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4] Length = 522 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/354 (33%), Positives = 186/354 (52%), Gaps = 16/354 (4%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+++ +AL+E G + ++Q L + D++ A+TG GKT+ FG+ L + D Sbjct: 3 PEIV-KALAEAGIEHTFAIQALTLPLAMAGDDLIGQARTGMGKTLGFGVPLLHRVQVPGD 61 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 P L + PTREL +QV +L+ G+ GG + L+ G + Sbjct: 62 -----GTPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRKGVDV 116 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 V+GTPGRL D + L + ++ +VLDEADEMLDLGF DIE IL P +R+ ++FSA Sbjct: 117 VIGTPGRLLDLAEQQHLVLGKIRGLVLDEADEMLDLGFLPDIERILRMVPDERQTMLFSA 176 Query: 188 TISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVNILRY 241 T+ I TLA+ + + A EN + + YRA + D+ I L+ Sbjct: 177 TMPGPIITLARTFLNQPTHIR-AEENDAGAIHERTAQFVYRAHSM---DKTELIARALQA 232 Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G ++F T+ + + L E F A+ G+L Q R AL+ R G+ V +AT Sbjct: 233 EGRGLTMIFSRTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVAT 292 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355 DVAARGID+ D+ VI+ + + + +HR GRTGRAGR G+++ ++ + + R Sbjct: 293 DVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAITLVDWDEEAR 346 >gi|260941746|ref|XP_002615039.1| hypothetical protein CLUG_05054 [Clavispora lusitaniae ATCC 42720] gi|238851462|gb|EEQ40926.1| hypothetical protein CLUG_05054 [Clavispora lusitaniae ATCC 42720] Length = 533 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 116/319 (36%), Positives = 179/319 (56%), Gaps = 15/319 (4%) Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 L +KDV+ A+TGSGKT AFG+ + +L E + L ++PTRELA+Q+ L Sbjct: 156 LSQKDVIGVAETGSGKTFAFGVPAVNNILKEKKQ-----GLKVLCLSPTRELALQIYDNL 210 Query: 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 E L TG+ GGVS + L+ A I V TPGRL D + +++S + +VL Sbjct: 211 ELLTKATGISCVAVYGGVSKMDQIEKLKT-ASIAVATPGRLVDLLEDGLVDLSSVDYLVL 269 Query: 155 DEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212 DEAD MLD GF + I+ I+ +P K R+ LMF+AT + LA + V+V I Sbjct: 270 DEADRMLDKGFEEHIKQIIGHTPAKAQRQTLMFTATWPKEVRELAAEFMTSPVKVTIGER 329 Query: 213 NRQHSDIDYRAVLVALSDRDN--AIVNILR-YHGAKN----AIVFCSTRASVSRFTKVLA 265 + ++ ++ + RD +V +LR Y N ++F + SR +L Sbjct: 330 DELSANKRITQIVEVIDPRDKERKLVQLLRKYQSGSNRNDKVLIFALYKKEASRVEGLLQ 389 Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325 F+V A+ G+LSQQ+R++AL + G + + +ATDVAARG+D+P++++VI+ Sbjct: 390 RSGFKVAAIHGDLSQQQRTHALGQFKSGESNLLLATDVAARGLDIPNVKVVINLTFPLTA 449 Query: 326 ENLLHRSGRTGRAGRKGMS 344 E+ +HR GRTGRAG+ G++ Sbjct: 450 EDYVHRIGRTGRAGQTGIA 468 >gi|268572017|ref|XP_002641212.1| Hypothetical protein CBG09074 [Caenorhabditis briggsae] Length = 732 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 118/367 (32%), Positives = 185/367 (50%), Gaps = 28/367 (7%) Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64 P + A+ E GY+ T +Q + L+ +DV+ A+TGSGKT AF L L T L Sbjct: 310 FPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 369 Query: 65 ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123 + +R + P A+ +APTRELA Q+ E G+ IGG S + L+ Sbjct: 370 KIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQGMKLRM 429 Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177 G +V+ TPGRL D + + L ++ V+LDEAD MLD+GF D++ IL+ P Sbjct: 430 GVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLPASNMKK 489 Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218 K R+ +MF+AT+SPAI LA+ Y + V+I + + Sbjct: 490 DTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNAGKPTER 549 Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278 ++ ++ + ++ ++ H IVF + + K LA+ + L G Sbjct: 550 VEQVVYMITKDRKPKKLLEVISQHDKYPIIVFVNRKHGADSLAKGLAKVGKKTSVLHGGK 609 Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338 Q R AL+ ++D ++ +ATDVA RGID+ D+ LVI+ +++ E+ HR GRTGRA Sbjct: 610 GQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 669 Query: 339 GRKGMSV 345 G+ G ++ Sbjct: 670 GKHGKAI 676 >gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 435 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 185/342 (54%), Gaps = 16/342 (4%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ ++GY + +Q + L KDV+ +AQTG+GKT AF L + L AS Sbjct: 15 AIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPILQRL--------NAS 66 Query: 74 APL------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 AP+ AL + PTRELA QV + + T + AV GGV ++ + L+ G I Sbjct: 67 APIKPHRIRALILTPTRELAAQVAQSVSTYGLHTPLKSAVVFGGVKINSQIAQLRRGVDI 126 Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 ++ TPGRL D + G+G ++ L+ +VLDEAD MLD+GF DI IL P +R+ L+FS Sbjct: 127 LIATPGRLLD-LHGQGEVDFGELEILVLDEADRMLDMGFIHDIRRILKLLPAERQNLLFS 185 Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246 AT + I L K + +D + V +AS N ++ V + + ++ Sbjct: 186 ATFAAEIRELTKKFLQDPIEVEVASRNATADKVEQWVYPVDKKRKGALLRELVEEKCWTQ 245 Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 +VF T+ +R + L + + A+ G SQ R+ AL+ + GR RV +ATD+AAR Sbjct: 246 VLVFSRTKHGANRLAQQLDKAGIEATAIHGNKSQGARTRALEDFKSGRLRVLVATDIAAR 305 Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 G+D+ L V++ +L + ++ +HR GRTGRAG G + ++ Sbjct: 306 GLDIAQLPQVVNFDLPNVAQDYVHRIGRTGRAGASGKAYSLV 347 >gi|297191502|ref|ZP_06908900.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC 25486] gi|197722058|gb|EDY65966.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC 25486] Length = 502 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 127/364 (34%), Positives = 192/364 (52%), Gaps = 7/364 (1%) Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65 ++P+ + AL+ +G +Q A L L +DVL +TGSGKT+AFGLA+ L Sbjct: 79 DMPEQLLAALAAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLAM---LAGT 135 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 + + PLAL + PTRELA QV L + +A +GG+S+ R+ L++GA Sbjct: 136 AGKRAEPRLPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQAGALRSGA 195 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184 +VV TPGRL D I+ + + VLDEAD+M D+GF + +LD P +RML Sbjct: 196 EVVVATPGRLKDLIQRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPDGQRML- 254 Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 FSAT+ + L + Y D V ++ + +++ + V +D+ I G Sbjct: 255 FSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVLHVDSADKHATTTEIAARDG- 313 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 I+F T+ +V R TK L + L G SQ +R+ L + G V +AT+VA Sbjct: 314 -RVIMFLDTKHAVDRLTKDLLNSGVRAAGLHGGKSQPQRNRTLTQFKSGHVTVLVATNVA 372 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 ARGI + +L+LV++ + ++P++ LHR GRT RAG G V ++ N +R RL A Sbjct: 373 ARGIHVDNLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRRDMARLLTHAG 432 Query: 365 VSVV 368 V V Sbjct: 433 VRPV 436 >gi|6753620|ref|NP_034158.1| ATP-dependent RNA helicase DDX3X [Mus musculus] gi|2500528|sp|Q62167|DDX3X_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3X; AltName: Full=D1Pas1-related sequence 2; AltName: Full=DEAD box RNA helicase DEAD3; Short=mDEAD3; AltName: Full=DEAD box protein 3, X-chromosomal; AltName: Full=Embryonic RNA helicase gi|407996|gb|AAA53630.1| RNA helicase [Mus musculus] gi|1835122|emb|CAA86261.1| dead-box RNA helicase [Mus musculus] gi|74187753|dbj|BAE24540.1| unnamed protein product [Mus musculus] gi|74190343|dbj|BAE37257.1| unnamed protein product [Mus musculus] gi|123858229|emb|CAM15722.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus musculus] gi|1098036|prf||2115205A RNA helicase Length = 662 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 192/367 (52%), Gaps = 31/367 (8%) Query: 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67 Y T VQ+ + P ++EK D++ AQTGSGKT AF L + S + A EN Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENG 258 Query: 68 RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126 R+ P++L +APTRELAVQ+ E ++ V V GG + ++ RDL+ G H Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCH 318 Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182 ++V TPGRL D + + + K +VLDEAD MLD+GF I I+ D+ P K R Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378 Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242 +MFSAT I LA+++ + + + + +I + V V D+ + ++++L Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNAT 438 Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 G + +VF T+ L + ++ G+ SQ++R AL R G++ + +AT Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498 Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 VAARG+D+ +++ VI+ +L S+ E +HR GRTGR G G+ A F Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546 Query: 362 EANVSVV 368 E N+++ Sbjct: 547 ERNINIT 553 >gi|311897074|dbj|BAJ29482.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054] Length = 487 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 121/354 (34%), Positives = 186/354 (52%), Gaps = 5/354 (1%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ RG + +Q A L L +DVL +TGSGKT+AFGLA+ + + + Sbjct: 61 LARRGVTSPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAVLARTTGQQ---AEPRQ 117 Query: 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 PLAL + PTRELA QV L + +A +GGV V R+ + L GA IVV TPGR Sbjct: 118 PLALVLVPTRELAQQVTEALTPYAHAAKLRMATVVGGVPVRRQAQVLNRGAEIVVATPGR 177 Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194 L D I + + + VLDEAD+M D+GF D+ +L+ + + ++FSAT+ + Sbjct: 178 LGDLIERRLCRLDRVAVTVLDEADQMTDMGFLPDVTALLEQVAEGGQTMLFSATLDRNVD 237 Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254 +L + + KD V ++ +++ + V +D+D I +I G I+F T+ Sbjct: 238 SLVRRFLKDPVTHSVDPSAGAVGTMEHHVLHVRGADKDATIAHIASRDG--RVIMFTDTK 295 Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 R L + + AL G SQ +R+ L+ R G +ATDVAARGI + L+ Sbjct: 296 HGADRLVAALLANGVKAAALHGGKSQPQRTRTLEQFRGGLVDALVATDVAARGIHVDGLD 355 Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 LV++ + ++ ++ LHR GRT RAG G V ++ N +R R+ A ++ V Sbjct: 356 LVVNLDPPADHKDYLHRGGRTARAGESGTVVTLVLPNQRRGTARMLATAGITPV 409 >gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC 700122] gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC 700122] Length = 721 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 181/337 (53%), Gaps = 5/337 (1%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+ + GY T VQE + L +D++ +A+TG+GKT AF L L D Sbjct: 38 AVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPTLDQLRYRAD----DE 93 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 PL + + PTRELA Q+ + +T V +GGV + + L+ GA I++ TPG Sbjct: 94 GPLMVIVTPTRELAQQIADTCAPIARRTNHSTVVLLGGVGYGPQIKKLRAGADIIIATPG 153 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL D +R ++ +++ +VLDEAD MLD+GF + I+D+ P +R+ L+FSATI + Sbjct: 154 RLLDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAERQTLLFSATIDRSQ 213 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 + + KD + IA ID + + + + +R G IVF T Sbjct: 214 DKVMFSLLKDPEIIEIAHRGDVADLIDQYVIKTDRRLKPALLNSFVRERGGFRVIVFTRT 273 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + TK L + A+ + SQ +R+ AL R+G+ V +ATDV +RGID+P++ Sbjct: 274 KGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVATDVLSRGIDVPEV 333 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349 + VI+ +L PE+ +HR GRTGRAG +G +V FV P Sbjct: 334 DYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTP 370 >gi|308051267|ref|YP_003914833.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] gi|307633457|gb|ADN77759.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM 9799] Length = 427 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 115/345 (33%), Positives = 184/345 (53%), Gaps = 4/345 (1%) Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63 F PQV+ EAL G+ + T +Q L L KD+ AQTG+GKT+AF +A LL Sbjct: 14 FPLAPQVV-EALESSGFTHCTPIQALTLPIVLSGKDIAGQAQTGTGKTLAFLVATFHELL 72 Query: 64 AEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122 + +P AL +APTRELA+Q+ ++ E L TG+ + + GG +R L+ Sbjct: 73 KQPAPEGHDGKSPRALIMAPTRELAIQIFKDAEPLSEATGLKLGLAYGGEGYDSQRATLE 132 Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKR 180 G I++GT GRL D+ + ++ ++ +VLDEAD M DLGF DI ++ +P +R Sbjct: 133 AGVDILIGTTGRLIDYYKQGTYKLNGIQVMVLDEADRMFDLGFIKDIRYLFRRMPAPAER 192 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 R ++FSAT+S + LA + + V + E + I + D+ ++ ++ Sbjct: 193 RNMLFSATLSFKVQELAYEHMNEPEHVQVEPEQKTGKRIKEELFYPSNDDKMRLLLTLIE 252 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 AI+F +T+ +A +V L+G++ Q++R L+ + G +A Sbjct: 253 EDWPDKAIIFANTKHRCEDIWAWMAGDGHRVGLLTGDVPQKKRVKILEQFKAGEVDFLVA 312 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 TDVAARG+ + D+ V + +L + E+ +HR GRTGRAG G S+ Sbjct: 313 TDVAARGLHIADVTHVFNYDLPDDAEDYVHRIGRTGRAGATGHSI 357 >gi|253998846|ref|YP_003050909.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp. SIP3-4] gi|253985525|gb|ACT50382.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4] Length = 538 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 178/335 (53%), Gaps = 1/335 (0%) Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73 A+++ GY T +Q + L D+L AQTG+GKT F L L L + A Sbjct: 23 AIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLLHLLQGRPGKNK-AG 81 Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 P L + PTRELA QV ++ + V GGV ++ + L+ I+V TPG Sbjct: 82 QPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLKKPLDILVATPG 141 Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193 RL DH K +++S ++ +VLDEAD MLD+GF DI+ +L PK+R+ L+FSAT S I Sbjct: 142 RLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQNLLFSATFSDEI 201 Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253 LA + V +A N ++ LV S + + + ++++ + + ++F T Sbjct: 202 KALADGLLHNPGFVEVARRNTASELVEQTVHLVRQSHKRDMVSHLIKQNNWQQVLIFTRT 261 Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 + +R L + A+ G SQ R+ AL +DG V +ATD+AARG+D+ L Sbjct: 262 KHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLVATDIAARGLDIDQL 321 Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 V++ EL + E+ +HR GRTGRAG G +V ++ Sbjct: 322 PQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLV 356 >gi|88859266|ref|ZP_01133906.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudoalteromonas tunicata D2] gi|88818283|gb|EAR28098.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudoalteromonas tunicata D2] Length = 449 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 114/343 (33%), Positives = 198/343 (57%), Gaps = 10/343 (2%) Query: 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74 L+ +G + T VQ+ + L +D+ V ++TGSGKT+AF + ++ + P S Sbjct: 25 LAHQGITSPTDVQQQAIPVALSGQDLFVQSKTGSGKTLAFLVPALQRIIKQK----PLSK 80 Query: 75 --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132 P A+ I PTRELA QV +L L A + +V +GG + + + + L+ H++V TP Sbjct: 81 RDPRAVIITPTRELANQVFAQLRLLVAGSNIVATKILGGDNFNDQIKALKKDPHVIVATP 140 Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-LDSSPKKRRMLMFSATISP 191 GRL DHI+ K ++ L+ +++DEAD ++DLGF+ +I+ I +++ + R+ L+FSAT+ Sbjct: 141 GRLADHIKQKSCFLAGLELLIIDEADRIMDLGFKAEIDLINTEANHRLRQTLLFSATLEH 200 Query: 192 A-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIV 249 + I L++N K +V ++ N +H+DI L ++ + + L IV Sbjct: 201 SQIDALSRNLLKSPKKVTLSQSNEEHTDITQNMFFADNLLHKEALLAHFLSKPNIGQCIV 260 Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 F +TR R +++++ AL+G++ Q +R + + G+++V I TD+A+RG+D Sbjct: 261 FTATREDTYRLSELISGKGLSSQALAGDMPQSKRLSIMDSFSRGQSQVLITTDIASRGLD 320 Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351 L ++ VI+ +L E +HR GRTGRAG KG ++ FV P++ Sbjct: 321 LLNVTHVINFDLPKQAEEYVHRIGRTGRAGFKGHAISFVGPKD 363 >gi|308485730|ref|XP_003105063.1| hypothetical protein CRE_20763 [Caenorhabditis remanei] gi|308257008|gb|EFP00961.1| hypothetical protein CRE_20763 [Caenorhabditis remanei] Length = 401 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 110/338 (32%), Positives = 187/338 (55%), Gaps = 13/338 (3%) Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 G+ +++Q+ + L+ +DV+ AQ+G+GKT F +++ TL + AL Sbjct: 45 GFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQTLDTQ------VRETQAL 98 Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 ++PTRELAVQ+ + + L V CIGG ++ + R L G H+V GTPGR+ D Sbjct: 99 ILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 158 Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 IR + L +K +VLDEADEML+ GF++ + I P ++++ SAT+ I + Sbjct: 159 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 218 Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255 + D +R+ + + I + VA+ + + ++++ A++FC+TR Sbjct: 219 KFMTDPIRILVKRDELTLEGI--KQFFVAVDKEEWKFDTLIDLYDTLTITQAVLFCNTRR 276 Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 V T + E F V ++ G++ Q++R ++ R G RV I+TDV ARG+D+P + L Sbjct: 277 KVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSL 336 Query: 316 --VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 VI+ +L +N E +HR GR+GR GRKG+++ + Q+ Sbjct: 337 VSVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 374 >gi|260775114|ref|ZP_05884013.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC BAA-450] gi|260609031|gb|EEX35191.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC BAA-450] Length = 433 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 190/342 (55%), Gaps = 6/342 (1%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AE 65 PQV+ E L ++G+ T +Q L L +D+ AQTG+GKT+AF A + LL E Sbjct: 18 PQVV-EGLKKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLNTPE 76 Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125 ++ P + P A+ +APTRELA+Q+ + E L A+TG+ A+ GG S ++ L+ G Sbjct: 77 HEGRKP-TQPRAIIMAPTRELAIQIYNDAEPLVAETGIKAALAYGGESYDKQLAKLEQGV 135 Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183 +++GT GR+ D + + N+++++AVVLDEAD M DLGF DI F+ PK+R + Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195 Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243