RPSBLAST alignment for GI: 254780601 and conserved domain: COG1643
>gnl|CDD|31829 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]. Length = 845
Score = 50.3 bits (120), Expect = 1e-06
Identities = 85/331 (25%), Positives = 133/331 (40%), Gaps = 50/331 (15%)
Query: 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99
V++ +TGSGKT L L + + P LA R +A +V EL
Sbjct: 68 VIIVGETGSGKTTQLPQFLLEEGLGIAGKIG-CTQPRRLA---ARSVAERVAEELG---E 120
Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
K G V I S R I V T G L I+ L +S V++DEA E
Sbjct: 121 KLGETVGYSIRFESKVSPR------TRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHE 173
Query: 160 MLDLGFRDDIE--FILDSSPKKR---RMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
DI + D ++R ++++ SAT+ Y +A + I E R
Sbjct: 174 RS---LNTDILLGLLKDLLARRRDDLKLIIMSATLDAERF---SAYFGNAPVIEI--EGR 225
Query: 215 QHS-DIDYRAVLVA---LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH--- 267
+ +I Y A L D A V+I G+ + +VF + + R + L +
Sbjct: 226 TYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG 285
Query: 268 -LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS--- 323
+++ L G LS +E+ + G+ +V +AT++A + +P + VI + L+
Sbjct: 286 DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345
Query: 324 -NPENLLHR-----------SGRTGRAGRKG 342
+P L R R GRAGR G
Sbjct: 346 YDPRTGLTRLETEPISKASADQRAGRAGRTG 376