RPSBLAST alignment for GI: 254780601 and conserved domain: COG1643

>gnl|CDD|31829 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]. Length = 845
 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 85/331 (25%), Positives = 133/331 (40%), Gaps = 50/331 (15%)

Query: 40  VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99
           V++  +TGSGKT      L    L    +    + P  LA    R +A +V  EL     
Sbjct: 68  VIIVGETGSGKTTQLPQFLLEEGLGIAGKIG-CTQPRRLA---ARSVAERVAEELG---E 120

Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
           K G  V   I   S    R        I V T G L   I+   L +S    V++DEA E
Sbjct: 121 KLGETVGYSIRFESKVSPR------TRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHE 173

Query: 160 MLDLGFRDDIE--FILDSSPKKR---RMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
                   DI    + D   ++R   ++++ SAT+          Y  +A  + I  E R
Sbjct: 174 RS---LNTDILLGLLKDLLARRRDDLKLIIMSATLDAERF---SAYFGNAPVIEI--EGR 225

Query: 215 QHS-DIDYRAVLVA---LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH--- 267
            +  +I Y     A   L D   A V+I    G+ + +VF   +  + R  + L +    
Sbjct: 226 TYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG 285

Query: 268 -LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS--- 323
              +++ L G LS +E+    +    G+ +V +AT++A   + +P +  VI + L+    
Sbjct: 286 DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345

Query: 324 -NPENLLHR-----------SGRTGRAGRKG 342
            +P   L R             R GRAGR G
Sbjct: 346 YDPRTGLTRLETEPISKASADQRAGRAGRTG 376