RPSBLAST alignment for GI: 254780601 and conserved domain: KOG0330
>gnl|CDD|35551 KOG0330, KOG0330, KOG0330, ATP-dependent RNA helicase [RNA processing and modification]. Length = 476
Score = 247 bits (632), Expect = 5e-66
Identities = 117/345 (33%), Positives = 197/345 (57%), Gaps = 8/345 (2%)
Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
P+++ EA E G+ T +Q + L +DV+ A+TGSGKT AF L + LL E
Sbjct: 69 HPELL-EACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP 127
Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
AL + PTRELA Q+ + E L + G+ VAV +GG+ + + L H
Sbjct: 128 ------KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPH 181
Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
I+V TPGRL DH+ KG ++ LK +VLDEAD +LD+ F +++++IL P++R+ +F
Sbjct: 182 ILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLF 241
Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
SAT++ + L + + V+V ++S+ + + + V D+D +V +L
Sbjct: 242 SATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGN 301
Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
+ IVFC+T + +L FQ + L G++SQ +R AL + G + + TDVA+
Sbjct: 302 SVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVAS 361
Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q
Sbjct: 362 RGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ 406