RPSBLAST alignment for GI: 254780601 and conserved domain: KOG0338

>gnl|CDD|35559 KOG0338, KOG0338, KOG0338, ATP-dependent RNA helicase [RNA processing and modification]. Length = 691
 Score =  200 bits (510), Expect = 9e-52
 Identities = 113/346 (32%), Positives = 176/346 (50%), Gaps = 11/346 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A S  GY   T +Q A +   L  KD+   A TGSGKT AF L +   LL  
Sbjct: 187 NLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLL-- 244

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P        L + PTRELA+QV    + L   T + V + +GG+ +  +   L++
Sbjct: 245 ---YRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS 301

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IV+ TPGRL DH+R     N+  ++ +VLDEAD ML+ GF D++  I+   PK R+ 
Sbjct: 302 RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQT 361

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNIL 239
           ++FSAT++  +  LA       VR+ +         +    + +      DR+  + +++
Sbjct: 362 MLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLI 421

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+    R   +L     +   L G L+Q++R  +L+  +     V I
Sbjct: 422 TRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLI 481

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA+RG+D+  ++ VI+  +    E+ LHR GRT RAGR G SV
Sbjct: 482 ATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV 527