RPSBLAST alignment for GI: 254780601 and conserved domain: KOG0339
>gnl|CDD|35560 KOG0339, KOG0339, KOG0339, ATP-dependent RNA helicase [RNA processing and modification]. Length = 731
Score = 187 bits (477), Expect = 5e-48
Identities = 113/352 (32%), Positives = 176/352 (50%), Gaps = 5/352 (1%)
Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
A+ + Y T +Q L L +DV+ A+TGSGKT AF + ++ + + P
Sbjct: 236 TAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE-LKPG 294
Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
P+ + + PTRELA Q+ E + G+ V GG S + ++L+ GA IVV TP
Sbjct: 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATP 354
Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
GRL D ++ K N+S + +VLDEAD M D+GF + I R+ L+FSAT
Sbjct: 355 GRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKK 414
Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIV 249
I LA++ D VRV + DI + V V S+ + +++ + ++
Sbjct: 415 IEKLARDILSDPVRVVQGEVGEANEDIT-QTVSVCPSEEKKLNWLLRHLVEFSSEGKVLI 473
Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
F + +A L F V L G+ Q ER+ L + R V +ATDVAARG+D
Sbjct: 474 FVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLD 533
Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
+P ++ V++ + + + + HR GRTGRAG KG++ ++ + A L
Sbjct: 534 IPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVN 585