RPSBLAST alignment for GI: 254780601 and conserved domain: KOG0340
>gnl|CDD|35561 KOG0340, KOG0340, KOG0340, ATP-dependent RNA helicase [RNA processing and modification]. Length = 442
Score = 208 bits (530), Expect = 4e-54
Identities = 120/351 (34%), Positives = 185/351 (52%), Gaps = 23/351 (6%)
Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
E L G T +Q+A + L +D + A+TGSGKT AF L + + L D +
Sbjct: 20 EQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRL--SEDPYGI- 76
Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
AL + PTRELA+Q+ + L + V+V +GG + + L + H+VV TP
Sbjct: 77 ---FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATP 133
Query: 133 GRLCDHIRGKGLNIS----HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
GRL DH+ S LK +VLDEAD +L F D +E I + PK R+ L+FSAT
Sbjct: 134 GRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSAT 193
Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDI------DYRAVLVALSDRDNAIVNILR-- 240
I+ I L + +IA E + +LV++ +D +V++LR
Sbjct: 194 ITDTIKQL----FGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDF 249
Query: 241 -YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
+ ++F +T + L +VV+L ++ Q+ER AL R AR+ I
Sbjct: 250 ENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILI 309
Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
ATDVA+RG+D+P +ELV++ ++ +P++ +HR GRT RAGRKGM++ ++ Q
Sbjct: 310 ATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQ 360