RPSBLAST alignment for GI: 254780601 and conserved domain: KOG0345
>gnl|CDD|35566 KOG0345, KOG0345, KOG0345, ATP-dependent RNA helicase [RNA processing and modification]. Length = 567
Score = 221 bits (564), Expect = 5e-58
Identities = 122/349 (34%), Positives = 197/349 (56%), Gaps = 10/349 (2%)
Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
+ EAL E G+ +T VQ A + L+ KDV+V A TGSGKT+AF L + + +
Sbjct: 17 LLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP 76
Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGAHIV 128
P AL I+PTRELA Q+ + + +GG SV + + + G +I+
Sbjct: 77 PGQV-GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNIL 135
Query: 129 VGTPGRLCDHIR--GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
VGTPGRL D ++ + L+ L+ +VLDEAD +LD+GF + IL PK+RR +FS
Sbjct: 136 VGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFS 195
Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHGA 244
AT + + LA+ ++ VRV++ +++ S + ++ ++ + +V++L +
Sbjct: 196 ATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKD 255
Query: 245 KNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
K IVF T ASV F K+ + L ++ ++ G++SQ+ R+ L+ R V TD
Sbjct: 256 KKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD 315
Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
VAARG+D+P ++LV+ + +P + +HR GRT RAGR+G + VF+ P+
Sbjct: 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPR 364