RPSBLAST alignment for GI: 254780601 and conserved domain: KOG0348
>gnl|CDD|35569 KOG0348, KOG0348, KOG0348, ATP-dependent RNA helicase [RNA processing and modification]. Length = 708
Score = 190 bits (484), Expect = 9e-49
Identities = 124/401 (30%), Positives = 190/401 (47%), Gaps = 73/401 (18%)
Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
TSVQ+ + L +D LV AQTGSGKT+A+ L + +L A + + P AL I P
Sbjct: 160 PTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVP 219
Query: 83 TRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
TRELA+Q+ ++ L +V V +GG E+ L+ G +I++GTPGRL DH++
Sbjct: 220 TRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKN 279
Query: 142 -KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-------------DSSPKKRRMLMFSA 187
K + S L+ +VLDEAD +L+LGF DI IL P + + ++ SA
Sbjct: 280 TKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSA 339
Query: 188 TISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDY------------------------- 221
T++ + LA KD V +++ S ++ +
Sbjct: 340 TLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQR 399
Query: 222 ------RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV----SRFTKVLAEHLFQ- 270
+ LVAL+ ++N +++ + IVF S SV S F++ L HL
Sbjct: 400 YTVVPPKLRLVALA---ALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGS 456
Query: 271 -----------------VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
L G + Q+ER++ Q R V + TDVAARG+DLP +
Sbjct: 457 SGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHV 516
Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
LV+ + + + LHR GRT RAG KG ++ F++P +
Sbjct: 517 GLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAE 557