HHsearch alignment for GI: 254780602 and conserved domain: COG0112
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism].
Probab=99.41 E-value=1.6e-11 Score=90.31 Aligned_cols=345 Identities=15% Similarity=0.108 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCC------CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999998699726656589749889999999999983887-569------98778989999999986421013
Q gi|254780602|r 15 ATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGE-TKY------TAVAGISPLREAIVEKFRRDNDL 87 (400)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y------~~~~G~~~lR~aia~~~~~~~g~ 87 (400)
T Consensus 13 ~i~~~i~~e~~rq~~---~ieLIASEN-~-~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga 87 (413)
T COG0112 13 EIFEAIQQELERQRE---HIELIASEN-F-TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGA 87 (413)
T ss_pred HHHHHHHHHHHHHHH---CEEEEECCC-C-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCC
T ss_conf 999999999998863---433551255-4-78999999745775301158997635678721799999999999998488
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC--CCCCCCCCCCCCCCCCHHHHHHCCC-
Q ss_conf 3332233233454333322222223322322223333232222---222222--2222222222232221033310001-
Q gi|254780602|r 88 HYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPD---MVALCG--GIPVFVDTQQDDNFQVSPEKLEQAI- 161 (400)
Q Consensus 88 ~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~---~~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~i- 161 (400)
T Consensus 88 ~--~anVQPhSGs-~AN~av~~All~pGD~imgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~-~IDyD~~~k~a~ 163 (413)
T COG0112 88 E--YANVQPHSGS-QANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETG-LIDYDEVEKLAK 163 (413)
T ss_pred C--CCCCCCCCCH-HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC-CCCHHHHHHHHH
T ss_conf 7--5045888756-89999999973898857505678787655799877664057767624063347-517999999999
Q ss_pred CCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 22122012113542100001233-33211122333332011101221-10000012233222111233322574146544
Q gi|254780602|r 162 TPKTKWLFLNSPSNPSGVVYSQN-RLRALADVLVRNPHVHIISDDIY-EHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK 239 (400)
Q Consensus 162 ~~~~k~i~l~nP~NPTG~v~s~~-~l~~i~~~~a~~~~i~ii~De~Y-~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK 239 (400)
T Consensus 164 e~kPKlii~G------~SaY~r~id~~~~reIa-d~VGA~L~~DmAHiaGLVA~G-~~p~P~~~------AdvVTtTTHK 229 (413)
T COG0112 164 EVKPKLIIAG------GSAYSRPIDFKRFREIA-DEVGAYLMVDMAHVAGLIAGG-VHPNPLPH------ADVVTTTTHK 229 (413)
T ss_pred HHCCCEEEEC------CCCCCCCCCHHHHHHHH-HHHCCEEEEHHHHHHHHHHCC-CCCCCCCC------CCEEECCCCC
T ss_conf 8499789977------60355446789999999-871936772177888887456-67999875------5267577534
Q ss_pred CCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCC-C--CCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 3223445444221101-226875310012223322222222-2--222346-7643222222110000000245530477
Q gi|254780602|r 240 AYAMTGLRIGYAAGAL-SLIKSMIVLQGQQTSGACSIAQWA-A--VEALNG-PQDFVVNNRKIFEYRRDLCVAQLQGVPG 314 (400)
Q Consensus 240 ~~~~~G~RiG~~v~~~-~li~~l~~~~~~~~~~~~~~~q~a-~--~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~g 314 (400)
T Consensus 230 Tl--rGPrGG~Il~~~eel~kkin~aV--FPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G 304 (413)
T COG0112 230 TL--RGPRGGIILTNDEELAKKINSAV--FPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-G 304 (413)
T ss_pred CC--CCCCCEEEEECCHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-C
T ss_conf 77--89984179836299998764000--7766788278889999999999728138999999999999999999976-9
Q ss_pred CEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEC-CCCCCC-----CCEEEEEE------EC
Q ss_conf 60330274--089986264102332113322489899999999873979983-502289-----97289996------29
Q gi|254780602|r 315 IRYMIPDG--AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQ-GSSFGH-----GPSIRISY------AV 380 (400)
Q Consensus 315 ~~~~~p~g--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p-G~~Fg~-----~~~iRis~------~~ 380 (400)
T Consensus 305 ~~vvs-GgTdnHl~lVDl~~~----------~~~-Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~ 372 (413)
T COG0112 305 FKVVS-GGTDNHLVLVDLRSK----------GLT-GKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGF 372 (413)
T ss_pred CEEEC-CCCCCEEEEEECCCC----------CCC-HHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCEECCHHHHHCCC
T ss_conf 86715-886444899972467----------987-789999999709765268899999888787663406688863579
Q ss_pred CHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999860
Q gi|254780602|r 381 SDAILEEACVRIKRFCHSL 399 (400)
Q Consensus 381 ~~e~l~~al~rl~~~l~~l 399 (400)
T Consensus 373 ~e~e~~~Ia~~I~~vl~~~ 391 (413)
T COG0112 373 GEAEMEEIADLIADVLDGL 391 (413)
T ss_pred CHHHHHHHHHHHHHHHHCC
T ss_conf 8899999999999999550