HHsearch alignment for GI: 254780602 and conserved domain: COG0403
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism].
Probab=97.76 E-value=8.1e-05 Score=49.39 Aligned_cols=275 Identities=18% Similarity=0.187 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHCCCCEEEC-CCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCCHHHH----HHHHHH---HHHHCCC
Q ss_conf 9999999999869972665-6589749889999999999983887--5699877898999----999998---6421013
Q gi|254780602|r 18 VAAQRVRDLRSKGIDVLCL-TAGEPDFDMPENVKYAVVRAMERGE--TKYTAVAGISPLR----EAIVEK---FRRDNDL 87 (400)
Q Consensus 18 ~~~~~~~~~~~~g~~ii~l-~~G~p~~~~p~~i~~a~~~al~~~~--~~Y~~~~G~~~lR----~aia~~---~~~~~g~ 87 (400)
T Consensus 61 e~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnil---e~pewyTaYTPYQ--pEISQGrLqaLfefQtlv~dLTGm 135 (450)
T COG0403 61 EALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRNIL---ENPEWYTAYTPYQ--PEISQGRLEALFEFQTLVADLTGL 135 (450)
T ss_pred HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHH---CCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999987066145425686468718278888764---3854223678886--366657999999899999998588
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 333223323-3454333322222223322322223333232222222----22222222222222322210333100012
Q gi|254780602|r 88 HYTSDQIIV-GTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVA----LCGGIPVFVDTQQDDNFQVSPEKLEQAIT 162 (400)
Q Consensus 88 ~~~~e~I~i-t~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 162 (400)
T Consensus 136 ~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~~~ 208 (450)
T COG0403 136 DVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESADD 208 (450)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCC-------HHHHHHHCCC
T ss_conf 744500231676999999999874147673499668868779999986112576399995642-------2556653246
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 21220121135421000012333321112233333201110122110000012233222111233322574146544322
Q gi|254780602|r 163 PKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYA 242 (400)
Q Consensus 163 ~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~ 242 (400)
T Consensus 209 ~~~~gv~vQyP~-~~G~--~~~d~~~l~~~~-h~~~al~~v---~aDpl-----aL~LL~-pPGe~GADIvvG~~Q-rfG 274 (450)
T COG0403 209 GDVFGVLVQYPN-TFGI--VEEDLRALIEAA-HSAGALVIV---AADPL-----ALGLLK-PPGEFGADIVVGSAQ-RFG 274 (450)
T ss_pred CCEEEEEEECCC-CCCC--CCHHHHHHHHHH-HHCCCEEEE---EECHH-----HHHCCC-CCCCCCCCEEEECCC-CCC
T ss_conf 773799997688-8773--414099999998-635977999---82636-----764557-841037866973376-047
Q ss_pred CC----CCCCCCCCCHHHHHHHHH----------------------------HHCCCCCCCCCCCCCC--CCCCCCCCCC
Q ss_conf 34----454442211012268753----------------------------1001222332222222--2222234676
Q gi|254780602|r 243 MT----GLRIGYAAGALSLIKSMI----------------------------VLQGQQTSGACSIAQW--AAVEALNGPQ 288 (400)
Q Consensus 243 ~~----G~RiG~~v~~~~li~~l~----------------------------~~~~~~~~~~~~~~q~--a~~~~l~~~~ 288 (400)
T Consensus 275 vPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp 354 (450)
T COG0403 275 VPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGP 354 (450)
T ss_pred CCCCCCCCCEEEEEEHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 77678875632223758674259984330464589980320128778888764001015548999999999999998696
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCC-CCEEE
Q ss_conf 4322222211000000024553047-76033
Q gi|254780602|r 289 DFVVNNRKIFEYRRDLCVAQLQGVP-GIRYM 318 (400)
Q Consensus 289 ~~~~~~~~~~~~~r~~~~~~L~~~~-g~~~~ 318 (400)
T Consensus 355 ~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~ 385 (450)
T COG0403 355 QGLKEIAERIHRLAAYLAAGLKEIGAGVELV 385 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 8899999999999999999876458864751