HHsearch alignment for GI: 254780602 and conserved domain: PRK00854
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed.
Probab=99.56 E-value=4.4e-14 Score=105.86 Aligned_cols=333 Identities=15% Similarity=0.138 Sum_probs=183.7
Q ss_pred CCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6997266565897--498-8999999999998388756998778989999999986421013333223323345433332
Q gi|254780602|r 29 KGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIF 105 (400)
Q Consensus 29 ~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~ 105 (400)
T Consensus 42 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~--~~~~~~~~~~~~~l~~~l~~~~~----~~~v~f~~SGsEAve 115 (404)
T PRK00854 42 DGRRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLT--LTSRAFRNDQLAPLYEELAALTG----SHKVLPMNSGAEAVE 115 (404)
T ss_pred CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHCCC----CCEEEECCCHHHHHH
T ss_conf 999998826299977542797999999999985678--65554265799999999974037----684885587799999
Q ss_pred CCCCCCC---------CCC-CCCCCCCCCCCCCCCCC-CCCC---CCCCCCCCCCCCCC--CCHHHHHHCCCCCCCCCEE
Q ss_conf 2222223---------322-32222333323222222-2222---22222222222322--2103331000122122012
Q gi|254780602|r 106 NALMATV---------NMG-DEVLIPRPYWVSYPDMV-ALCG---GIPVFVDTQQDDNF--QVSPEKLEQAITPKTKWLF 169 (400)
Q Consensus 106 ~~~~~~~---------~~G-d~Vlv~~P~y~~y~~~~-~~~g---~~~~~v~~~~~~~~--~~d~~~l~~~i~~~~k~i~ 169 (400)
T Consensus 116 ~AiklAr~~~~~~~g~~tgr~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~p~~d~~~l~~~~~~~~aAvi 195 (404)
T PRK00854 116 TAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFAPGFRVVPFGDAAALEAAITPNTVAFL 195 (404)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCEEEEE
T ss_conf 99999999876503787898559996456678601354346774335688899998155056668999986398748999
Q ss_pred ECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 1135-4210000-12333321112233333201110122110000012233-2221112333225741465443223445
Q gi|254780602|r 170 LNSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTGL 246 (400)
Q Consensus 170 l~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G~ 246 (400)
T Consensus 196 i-EPiqg~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~TGfGRtG~~fa~e~~gv~PD-----ii--~~gKgl~-gG~ 265 (404)
T PRK00854 196 I-EPIQGEAGVIIPPAGYFRRVRELC-TANNVTLILDEIQTGLGRTGKLLAEEHEGIEAD-----VT--LIGKALS-GGF 265 (404)
T ss_pred E-ECCCCCCCCCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC-----EE--EECCCCC-CCC
T ss_conf 9-177577896179989999999999-970764457500017863557414554248979-----89--7564445-887
Q ss_pred -CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCC--CCEEEECC
Q ss_conf -44422110122687531001222332222222222223467--64322222211000000024553047--76033027
Q gi|254780602|r 247 -RIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGVP--GIRYMIPD 321 (400)
Q Consensus 247 -RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~~--g~~~~~p~ 321 (400)
T Consensus 266 ~Pl~av~~~~~i~~~~~~~~h~~T~~gnpla~aaa~a~l~~i~~e~l~~----~~~~~g~~l~~~L~~l~~~~i~~VRG~ 341 (404)
T PRK00854 266 YPVSAVLSNSEVLGVLRPGQHGSTFGGNPLACAVARAALRVLVEEGMIE----NAAEQGAYFLEGLRAIRGNIVREVRGR 341 (404)
T ss_pred CCCCEEECCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 6532020479999506798877888989899999999999998658999----999999999999985048972766444
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHH
Q ss_conf 40899862641023321133224898999999998739799835022899728999--62999999999999999998
Q gi|254780602|r 322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCH 397 (400)
Q Consensus 322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~ 397 (400)
T Consensus 342 G-lm~gve~~~~----------~~~~~~~~~~~-~~~Gll~~~~----~~~~ir~~PPL~it~~eid~~l~~l~~~La 403 (404)
T PRK00854 342 G-LMLAVELEPE----------AGGARQYCEAL-KARGLLAKDT----HDHTIRLAPPLVITREQVDWAVSQIAKVLA 403 (404)
T ss_pred C-EEEEEEEECC----------HHHHHHHHHHH-HHCCEEECCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5-5999998556----------67799999999-9799598748----999899979957899999999999999966