HHsearch alignment for GI: 254780602 and conserved domain: PRK01278

>PRK01278 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=99.63  E-value=9.2e-15  Score=109.98  Aligned_cols=335  Identities=16%  Similarity=0.185  Sum_probs=189.1

Q ss_pred             HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565897--498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r   28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI  104 (400)
Q Consensus        28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l  104 (400)
T Consensus        28 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~l~~-~~~~~~~-~~~~~la~~L~~~~----~~d~v~f~~sGsEAv  101 (389)
T PRK01278         28 EDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWH-VSNLYRI-PEQERLAERLVENS----FADKVFFTNSGAEAV  101 (389)
T ss_pred             CCCCEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCCC-CCCCCCC-HHHHHHHHHHHHCC----CCCEEEEECCHHHHH
T ss_conf             99899999360988612289978999999999865667-6565368-79999999975336----768799968748999


Q ss_pred             CCCCCCC----C---CCC-CCCCCCCCCCCCCCCC-CCCCCCC---CCCCCCCCCCC--CCCHHHHHHCCCCCCCCCEEE
Q ss_conf             2222222----3---322-3222233332322222-2222222---22222222232--221033310001221220121
Q gi|254780602|r  105 FNALMAT----V---NMG-DEVLIPRPYWVSYPDM-VALCGGI---PVFVDTQQDDN--FQVSPEKLEQAITPKTKWLFL  170 (400)
Q Consensus       105 ~~~~~~~----~---~~G-d~Vlv~~P~y~~y~~~-~~~~g~~---~~~v~~~~~~~--~~~d~~~l~~~i~~~~k~i~l  170 (400)
T Consensus       102 e~AlklAr~~~~~~g~t~r~~ii~~~~~yHG~t~~~~s~sg~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavii  181 (389)
T PRK01278        102 ECAIKTARRYQYGKGHPERYRIITFEGAFHGRTLATIAATGQEKYLEGFGPLVDGFDQVPFGDIEALKAAITPNTAAILI  181 (389)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCCEEEEE
T ss_conf             99999999988853999972899988888867635113578844336668998882467789789999862888179999


Q ss_pred             CCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             135-421000-012333321112233333201110122110000012233-22211123332257414654432234454
Q gi|254780602|r  171 NSP-SNPSGV-VYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTGLR  247 (400)
Q Consensus       171 ~nP-~NPTG~-v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G~R  247 (400)
T Consensus       182 -EPi~g~gG~~~~~~~yl~~l~~lc-~~~g~llI~DEV~tGfGRtG~~fa~e~~gv~PD-----iv--~~gK~l~-gG~P  251 (389)
T PRK01278        182 -EPIQGEGGIRPLPDEFLKGLRQLC-DENGLLLIFDEVQCGVGRTGKLFAHEWAGVTPD-----IM--ALAKGIG-GGFP  251 (389)
T ss_pred             -ECCCCCCCCCCCCHHHHHHHHHHH-HHHCCEEEEEEEECCCCCCCCCCHHHCCCCCCC-----EE--EECCCCC-CCCC
T ss_conf             -688888896069999999999999-860653874210007775566422003676898-----67--8701246-8874


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC----CCCC-EEEECCC
Q ss_conf             4422110122687531001222332222222222223467643222222110000000245530----4776-0330274
Q gi|254780602|r  248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQG----VPGI-RYMIPDG  322 (400)
Q Consensus       248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~----~~g~-~~~~p~g  322 (400)
T Consensus       252 ~sav~~~~ei~~~~~~g~~~~T~~gnp~~~aaala~L~~i~~--~~l~~~v~~~G~~l~~~L~~l~~~~p~~i~~vRG~-  328 (389)
T PRK01278        252 LGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVVLA--PGFLDNVQKMGLYLKQKLESLVDRFPDVIEEVRGE-  328 (389)
T ss_pred             EEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE-
T ss_conf             279986388785436887677999799999999999999986--46999999999999999999987686713556450-


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf             0899862641023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r  323 AFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       323 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l  399 (400)
T Consensus       329 Gl~~gie~~-------------~~~~~i~~~~~-~~Gll~~~~g----~~~lr~~PpL~it~~ei~~~~~~l~~al~~v  389 (389)
T PRK01278        329 GLMLGLKCV-------------VPSRDLVAALR-DEGLLTVPAG----DNVVRLLPPLIITEEEIDEALERLERAAESL  389 (389)
T ss_pred             EEEEEEEEC-------------CCHHHHHHHHH-HCCCEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             369999945-------------88999999999-7993897279----9979997881398999999999999999759