HHsearch alignment for GI: 254780602 and conserved domain: PRK09331

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional.
Probab=99.65  E-value=5.8e-16  Score=117.30  Aligned_cols=334  Identities=16%  Similarity=0.163  Sum_probs=184.2

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCC--CCC-------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             97266565897498899999999999838875--699-------877898999999998642101333322332334543
Q gi|254780602|r   31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGET--KYT-------AVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAK  101 (400)
Q Consensus        31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~--~Y~-------~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~  101 (400)
T Consensus        17 ~~~in~~piq~gg~lt~ea~ka~~~~g-dgysvcd~C~~~LD~i~~Ppi~~f~~~la~fl----g~----D~~rlvnGar   87 (386)
T PRK09331         17 EEMINLDPIQRGGRLTPEARKALIEYG-DGYSVCDYCKGRLDKIEKPPIADFHEDLAKFL----GM----DEARVTPGAR   87 (386)
T ss_pred             HCCCCCCHHHHCCCCCHHHHHHHHHHC-CCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHH----CC----CEEEECCCCC
T ss_conf             313356735526968999999999974-88736645411011255998899999999984----99----6378528842


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHH----HHHHCCCCC--CCCCEEECCCC
Q ss_conf             33322222223322322223333-232222222222222222222223222103----331000122--12201211354
Q gi|254780602|r  102 HVIFNALMATVNMGDEVLIPRPY-WVSYPDMVALCGGIPVFVDTQQDDNFQVSP----EKLEQAITP--KTKWLFLNSPS  174 (400)
Q Consensus       102 ~~l~~~~~~~~~~Gd~Vlv~~P~-y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~----~~l~~~i~~--~~k~i~l~nP~  174 (400)
T Consensus        88 ~g~qAv~~a~c~~GD~VIl~rnaHyS~~-~A~elaG~~~~~v~~~~~~~~~I~~~~~~~~Iee~~~e~gk~~aL~ll--t  164 (386)
T PRK09331         88 EGKFAVMHALCKKGDYVVLDGLAHYTSY-VAAERAGLNVREVPKTGYPDYRITPEAYAEKIEEVEDETGKPPALALL--T  164 (386)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCHHHHH-HHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE--E
T ss_conf             7899999986369997984484059999-999975985899368777234508005799999999861898559999--6


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             21000012333321112233333201110122110000012233222111233322574146544322344544422110
Q gi|254780602|r  175 NPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA  254 (400)
Q Consensus       175 NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~  254 (400)
T Consensus       165 ~pdy~yGn~~d~~~i~~ia-h~~~ip~lvdeA~~~----~~~P~~a~~~--Ga---D~~v~S~HK~~~s~t-~sgvL~~~  233 (386)
T PRK09331        165 HVDGNYGNLHDAKKIAKVA-HQYGIPLLLNGAYTV----GRMPVDGKEL--GA---DFIVGSGHKSMAASA-PSGVLATT  233 (386)
T ss_pred             CCCCCCCCHHHHHHHHHHH-HHCCCCEEEECCCCC----CCCCCCHHHC--CC---CEEEEECCCCCCCCC-CCEEEECC
T ss_conf             8886644546389999999-874981898144335----7789746663--99---889863454442346-31244304


Q ss_pred             HHHHHHHHH-----------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE--ECC
Q ss_conf             122687531-----------0012223322222222222234676432222221100000002455304776033--027
Q gi|254780602|r  255 LSLIKSMIV-----------LQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYM--IPD  321 (400)
Q Consensus       255 ~~li~~l~~-----------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~--~p~  321 (400)
T Consensus       234 ~e~~d~v~R~s~~~~~Kev~mLgcTs~g~psy~LMA---Sfd~vrerv~~~-d~ev~~ar~~~~El~kIeG~~~lge~P~  309 (386)
T PRK09331        234 EEYADKVFRTSKKFGVKEVELLGCTLRGAPLVTLMA---SFPHVKERVKNW-DEEVEKARWFVDELEKIEGFKQLGEKPR  309 (386)
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHH---CCHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHCCCCCC
T ss_conf             530155652264305789988536334640899980---659999999877-8999999999999860876554065778


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE-CCCCCCCCCEEE-EEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             408998626410233211332248989999999987397998-350228997289-996299999999999999999860
Q gi|254780602|r  322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVV-QGSSFGHGPSIR-ISYAVSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~-pG~~Fg~~~~iR-is~~~~~e~l~~al~rl~~~l~~l  399 (400)
T Consensus       310 ~hdl~~fdtt~~~---~ia~~~~~~Gy~l~~~-Lk~r~I~ge~sg~----t~~lkl~s~G~t~E~v~~li~A~keIaeky  381 (386)
T PRK09331        310 NHDLMRFETPSFD---EIAKKHKRRGFFLYEE-LKKRGIHGIKPGL----TKEFKLSTYGLTWEQVEYVADSFKEIAEKY  381 (386)
T ss_pred             CCCCEEECCCCEE---EEHHHCCCCCEEHHHH-HHHCCCEEEECCC----CEEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             7774353376412---2232048660567999-9767964995571----017878861787899999999999999982