HHsearch alignment for GI: 254780602 and conserved domain: TIGR00474
>TIGR00474 selA L-seryl-tRNA selenium transferase; InterPro: IPR004534 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homolog of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N-terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pyloriputative SelA.; GO: 0004125 L-seryl-tRNASec selenium transferase activity, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=97.79 E-value=3.5e-05 Score=51.65 Aligned_cols=262 Identities=20% Similarity=0.196 Sum_probs=154.8
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26656589749889999999999983887-5699877898999-999998642101333322332334543333222222
Q gi|254780602|r 33 VLCLTAGEPDFDMPENVKYAVVRAMERGE-TKYTAVAGISPLR-EAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA 110 (400)
Q Consensus 33 ii~l~~G~p~~~~p~~i~~a~~~al~~~~-~~Y~~~~G~~~lR-~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~ 110 (400)
T Consensus 69 vLnTnlGra~~--ae~v~~a~~~~~~~~v~LEY~L~~~gRG~R~~~i~~lLc~lTg---ae~~cvvnNna~a-vlL~l~~ 142 (448)
T TIGR00474 69 VLNTNLGRALF--AEAVNEAISEAMRKYVNLEYDLDEGGRGHRDAHIEKLLCKLTG---AEDACVVNNNAAA-VLLMLAT 142 (448)
T ss_pred EEEHHHCCHHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHCC---CCCCEEEECHHHH-HHHHHHH
T ss_conf 65300144367--9999999999862577531102115753178999999875328---6233044233899-9999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCC--CCCCCC
Q ss_conf 23322322223333232222222------2222222222222232221033310001221220121135421--000012
Q gi|254780602|r 111 TVNMGDEVLIPRPYWVSYPDMVA------LCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNP--SGVVYS 182 (400)
Q Consensus 111 ~~~~Gd~Vlv~~P~y~~y~~~~~------~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NP--TG~v~s 182 (400)
T Consensus 143 ~a-~GKeVi~srGEL~eiGg~fRipdim~~~g~~l~eVGttn~----t~~~Dy~~ai~~nTa~Lmkvh~sNf~~~gft~~ 217 (448)
T TIGR00474 143 LA-KGKEVIISRGELVEIGGAFRIPDIMKQAGCELDEVGTTNR----THVKDYRVAITENTALLMKVHLSNFKIVGFTAK 217 (448)
T ss_pred HC-CCCEEEEECCCCCCCCCCCCCHHHHHHCCCEEEECCCHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 60-7987999788657898756544889653856510110120----004467776531034444443016625652111
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCC--------CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 33332111223333320111012211000--------0012233222111233322574146544322344544422110
Q gi|254780602|r 183 QNRLRALADVLVRNPHVHIISDDIYEHIV--------YRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGA 254 (400)
Q Consensus 183 ~~~l~~i~~~~a~~~~i~ii~De~Y~~l~--------~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~ 254 (400)
T Consensus 218 ~-~eeeLv~L-G~~~~~pv~~D~gSG~LvdL~~~gL~~~eP~~~~~i~~--G---~dLVs~SgDKLL--gGpqaGiivGK 288 (448)
T TIGR00474 218 V-KEEELVKL-GKELDVPVVTDLGSGLLVDLSQYGLPKNEPNVQEAIAL--G---VDLVSFSGDKLL--GGPQAGIIVGK 288 (448)
T ss_pred C-CHHHHHHH-HHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCCHHHHC--C---CCEEECCCCCCC--CCCCCCEEECC
T ss_conf 5-77899973-22337707998776621225441666688971068866--9---857861651004--67650346230
Q ss_pred HHHHHHHHHHCCCCCCCC--CCCCC-CCCCCCCCCCCCCCCCCC---------CCCCCCCCCHHHHHHCCCC
Q ss_conf 122687531001222332--22222-222222346764322222---------2110000000245530477
Q gi|254780602|r 255 LSLIKSMIVLQGQQTSGA--CSIAQ-WAAVEALNGPQDFVVNNR---------KIFEYRRDLCVAQLQGVPG 314 (400)
Q Consensus 255 ~~li~~l~~~~~~~~~~~--~~~~q-~a~~~~l~~~~~~~~~~~---------~~~~~~r~~~~~~L~~~~g 314 (400)
T Consensus 289 Keli~ki~~~p~kr~Lr~dk~~LAGle~tLkly~~PEkl~E~ip~lr~ltr~~~~~~~~a~rL~~~L~~~~~ 360 (448)
T TIGR00474 289 KELIEKIQIHPLKRALRADKLTLAGLEATLKLYLNPEKLLEKIPTLRLLTRAKKFLRIKAERLEKELKAIDG 360 (448)
T ss_pred HHHHHHHHHCCCCEEHHCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 789999854786221012416799999999741580243044215565303488999999998887503568