HHsearch alignment for GI: 254780602 and conserved domain: TIGR00713

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=99.45  E-value=1.5e-13  Score=102.67  Aligned_cols=345  Identities=18%  Similarity=0.206  Sum_probs=200.0

Q ss_pred             HCCCCEEECCC--CCCCCC-CCHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             86997266565--897498-8999999999998388756998-7789899999999864210133332233233454333
Q gi|254780602|r   28 SKGIDVLCLTA--GEPDFD-MPENVKYAVVRAMERGETKYTA-VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV  103 (400)
Q Consensus        28 ~~g~~ii~l~~--G~p~~~-~p~~i~~a~~~al~~~~~~Y~~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~  103 (400)
T Consensus        45 vDG~~YIDyv~swGPLILGHahp~v~~Av~e~lerG~-syG~PtE~Ei~lA~~i~~~v~~-----~t~e~vRfVnSGTEA  118 (434)
T TIGR00713        45 VDGNEYIDYVLSWGPLILGHAHPKVVEAVKEALERGT-SYGAPTEAEILLAKEIISRVPS-----VTEEMVRFVNSGTEA  118 (434)
T ss_pred             CCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHCCC-----CCCCEEEEECCCCHH
T ss_conf             3888001211000020117897689999999997301-2689988999999999864055-----546516862176488


Q ss_pred             CCCCC---CCCCCCCCCCCCCCCCCCCCCCCC-CC--CCCCCC---CCCCCCC-------CCCC---CHHHHHHCCCCC-
Q ss_conf             32222---222332232222333323222222-22--222222---2222222-------3222---103331000122-
Q gi|254780602|r  104 IFNAL---MATVNMGDEVLIPRPYWVSYPDMV-AL--CGGIPV---FVDTQQD-------DNFQ---VSPEKLEQAITP-  163 (400)
Q Consensus       104 l~~~~---~~~~~~Gd~Vlv~~P~y~~y~~~~-~~--~g~~~~---~v~~~~~-------~~~~---~d~~~l~~~i~~-  163 (400)
T Consensus       119 TMsAvRLARG~TGR-~~IiKFeGcYHGh~D~lLv~AGSGaaT~g~CG~P~SpGvP~~~~k~Tl~~PYND~~a~~~~f~~~  197 (434)
T TIGR00713       119 TMSAVRLARGFTGR-DKIIKFEGCYHGHHDALLVKAGSGAATLGSCGLPTSPGVPEDFAKLTLVLPYNDLEALEEAFEEY  197 (434)
T ss_pred             HHHHHHHHHHCCCC-CCEEEECCCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf             99999986310588-72788617641012320035452101046887788888701143113404517389999999867


Q ss_pred             --CCCCEEEC-CCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             --12201211-354210000123-33321112233333201110122110000012233222111233322574146544
Q gi|254780602|r  164 --KTKWLFLN-SPSNPSGVVYSQ-NRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSK  239 (400)
Q Consensus       164 --~~k~i~l~-nP~NPTG~v~s~-~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK  239 (400)
T Consensus       198 G~~iAgvIvEPv~GN-mGvvpP~~eFL~~Lr~lt-~e~g~LLI~DEV~TGFRva~~GAQ~yfgV~PD-----l~~--lGK  268 (434)
T TIGR00713       198 GEEIAGVIVEPVAGN-MGVVPPKKEFLEGLRELT-EEYGALLIFDEVITGFRVALGGAQEYFGVEPD-----LTT--LGK  268 (434)
T ss_pred             CCCEEEEEECCCCCC-CCCCCCCCCHHHHHHHHH-HHHCCEEEEECCCCHHHCCHHHCCHHCCCCCC-----CEE--ECH
T ss_conf             983437886120257-666488522358999999-87295775502210122133215011378741-----034--233


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             322344544422110122687531---0012223322222222222234676---4322222211000000024553047
Q gi|254780602|r  240 AYAMTGLRIGYAAGALSLIKSMIV---LQGQQTSGACSIAQWAAVEALNGPQ---DFVVNNRKIFEYRRDLCVAQLQGVP  313 (400)
Q Consensus       240 ~~~~~G~RiG~~v~~~~li~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~r~~~~~~L~~~~  313 (400)
T Consensus       269 I~G-GGlP~gA~gGrrEiM~~laP~G~vYQAGTlsGNPlam~AG~atLk~~~~~~~~Y~~l~~~~~~L~~g~~e~l~~-~  346 (434)
T TIGR00713       269 IIG-GGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEKGVYTELDELAKRLAEGLSEVLED-K  346 (434)
T ss_pred             HHC-CCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-C
T ss_conf             233-76451012267568843178877445643555889999999999985348883489999999999999999982-7


Q ss_pred             CCEE-EECCCCEE-EEEE-CCCCCCCCCCCCCCCCCHH----HHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCHHHHH
Q ss_conf             7603-30274089-9862-6410233211332248989----99999998739799835022899728999629999999
Q gi|254780602|r  314 GIRY-MIPDGAFY-LYPS-CQDLIGKKSPSGDVIRTDL----DFVNGLLEIEKVAVVQGSSFGHGPSIRISYAVSDAILE  386 (400)
Q Consensus       314 g~~~-~~p~g~~y-~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis~~~~~e~l~  386 (400)
T Consensus       347 gip~~~~~~gSMf~~FFtd~~~V~ny~----~A~~SD~e~F~~Ff~~mL~~-GVylpP-S~F--Ea~F-~S~AH~~E~i~  417 (434)
T TIGR00713       347 GIPHTVNRVGSMFSLFFTDEEEVTNYA----DAKKSDTELFAKFFHEMLEK-GVYLPP-SQF--EACF-ISAAHTEEDIE  417 (434)
T ss_pred             CCCEEEEECCCEEEEEECCCCCCCCHH----HHHHHHHHHHHHHHHHHHHC-CCCCCC-CCH--HHHH-HCCCCCHHHHH
T ss_conf             985899504400456657788987889----99886189889999999858-887898-721--1555-16777721178


Q ss_pred             ----HHHHHHHHHHHHC
Q ss_conf             ----9999999999860
Q gi|254780602|r  387 ----EACVRIKRFCHSL  399 (400)
Q Consensus       387 ----~al~rl~~~l~~l  399 (400)
T Consensus       418 yaq~~ti~a~~~~f~~~  434 (434)
T TIGR00713       418 YAQTNTIEAAEEVFAEL  434 (434)
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999998409