HHsearch alignment for GI: 254780602 and conserved domain: TIGR01140
>TIGR01140 CobD L-threonine-O-3-phosphate decarboxylase, putative; InterPro: IPR005860 L-threonine-O-3-phosphate decarboxylase (CobD) was shown to decarboxylate L-threonine O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, which is the precursor for the linkage between the nucleotide loop and the corrin ring in the biosynthesis of cobalamin . The molecule is a dimer where each subunit consists of a large and small domain . This family contains pyridoxal phosphate-binding class II aminotransferases closely related to histidinol-phosphate aminotransferase (HisC). ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=100.00 E-value=7e-45 Score=293.28 Aligned_cols=332 Identities=23% Similarity=0.334 Sum_probs=275.4
Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97266565897498899999999999838875699877898999999998642101333322332334543333222222
Q gi|254780602|r 31 IDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMA 110 (400)
Q Consensus 31 ~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~ 110 (400)
T Consensus 5 ~~lLDFsAninPlgpP~S~~aa~~~aLd~-~~rYPD~d-Y~hlrqA~AdH~------q~~~dwvl~gnG~~e~i~la~~t 76 (349)
T TIGR01140 5 DDLLDFSANINPLGPPASVKAALAAALDA-LERYPDDD-YIHLRQALADHH------QVAADWVLAGNGELESIRLAAET 76 (349)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHHHH------CCCCCCEECCCCCHHHHHHHHHH
T ss_conf 43032434578888760204589874278-76088843-189999986541------25601254599727888998861
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHH----HHHCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 233223222233332322222222222222--222222232221033----31000122122012113542100001233
Q gi|254780602|r 111 TVNMGDEVLIPRPYWVSYPDMVALCGGIPV--FVDTQQDDNFQVSPE----KLEQAITPKTKWLFLNSPSNPSGVVYSQN 184 (400)
Q Consensus 111 ~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~--~v~~~~~~~~~~d~~----~l~~~i~~~~k~i~l~nP~NPTG~v~s~~ 184 (400)
T Consensus 77 ~~~~Gd~~~V~~P~F~eYgR~~~~~Gae~~ti~w~~~~~~~W~~~~dPseiA~l~A~~s~h~~lilctPnNPtG~l~~r~ 156 (349)
T TIGR01140 77 LVSRGDAVLVVAPAFAEYGRELELAGAELKTIRWSLDEADGWRVLRDPSEIALLDAVTSEHDLLILCTPNNPTGDLLERD 156 (349)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCH
T ss_conf 47888757870887026799998569812234577316888745576456654126883313531117676989862247
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH-HHHHHHH
Q ss_conf 332111223333320111012211000001223322211123332257414654432234454442211012-2687531
Q gi|254780602|r 185 RLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALS-LIKSMIV 263 (400)
Q Consensus 185 ~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~-li~~l~~ 263 (400)
T Consensus 157 ~l~A~a~rc-~~~N~~LllDEAF~dF~pPG~E-~~l~p~l~~-~P~~~vlRSLTKfy~lPGLRlGylva~~Da~la~~r~ 233 (349)
T TIGR01140 157 ALRALADRC-KAVNIELLLDEAFLDFLPPGEE-TSLVPSLKD-TPNVVVLRSLTKFYALPGLRLGYLVAVDDALLARLRA 233 (349)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHC-CCCEEEECCHHHHHCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 899999888-8740466665565157898644-343413326-8978997111554025024454555166178999997
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 00122233222222222222346764322222211000000024553047760330274089986264102332113322
Q gi|254780602|r 264 LQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDV 343 (400)
Q Consensus 264 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~ 343 (400)
T Consensus 234 ~r~--pW~vnalAaaag~~al~-~sef~q~tw~wl~~erar~~qaL~~lP~l~v~Ps~anf-LLl~~~------------ 297 (349)
T TIGR01140 234 ARR--PWSVNALAAAAGAAALR-DSEFRQETWRWLAEERARLRQALADLPLLDVYPSRANF-LLLKVE------------ 297 (349)
T ss_pred HCC--CCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-EEEECC------------
T ss_conf 428--99877689999999876-67899999874366778999999717887558888761-145458------------
Q ss_pred CCCHHHHHHHHHHHCCEEEECCCCCC-C-CCEEEEEEECCH--HHHHHHHH
Q ss_conf 48989999999987397998350228-9-972899962999--99999999
Q gi|254780602|r 344 IRTDLDFVNGLLEIEKVAVVQGSSFG-H-GPSIRISYAVSD--AILEEACV 390 (400)
Q Consensus 344 ~~~~~~~~~~Ll~~~gV~v~pG~~Fg-~-~~~iRis~~~~~--e~l~~al~ 390 (400)
T Consensus 298 -~~~~dl~~~llt~~~IliRdc~~fpgLds~~~RVAvRt~a~N~rLlaALa 347 (349)
T TIGR01140 298 -REDVDLQEELLTKERILIRDCLSFPGLDSDYYRVAVRTAAENDRLLAALA 347 (349)
T ss_pred -CCCHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf -98688999998743410012057888887527888528554789999961