HHsearch alignment for GI: 254780602 and conserved domain: TIGR01788
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=98.46 E-value=7.7e-08 Score=67.82 Aligned_cols=359 Identities=15% Similarity=0.147 Sum_probs=190.9
Q ss_pred HHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCC----CC-
Q ss_conf 999869972665658974988999999999998388---7569987789899999999864210133-33223----32-
Q gi|254780602|r 25 DLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERG---ETKYTAVAGISPLREAIVEKFRRDNDLH-YTSDQ----II- 95 (400)
Q Consensus 25 ~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~---~~~Y~~~~G~~~lR~aia~~~~~~~g~~-~~~e~----I~- 95 (400)
T Consensus 42 EL~LDGNprLNLAsFV~Tw-me~EA~KLm~e~~~KN~ID~dEYPqTar~i~~R--CVnM~a~LfhAp~~~D~~~~savGt 118 (493)
T TIGR01788 42 ELSLDGNPRLNLASFVTTW-MEPEAEKLMDETLNKNMIDKDEYPQTAREIENR--CVNMLADLFHAPALKDEEAASAVGT 118 (493)
T ss_pred HCCCCCCHHHHHHCCCCCC-CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC--CEEHHHHHHCCCCCCCCCCCCCEEC
T ss_conf 4045776222321324787-776789999725577701100165448988504--3012344114787778775664351
Q ss_pred CCCCCCCCCCCCCCCC-----------CCCCC--C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 3345433332222222-----------33223--2--2223333232222222222222222222223222103331000
Q gi|254780602|r 96 VGTGAKHVIFNALMAT-----------VNMGD--E--VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA 160 (400)
Q Consensus 96 it~G~~~~l~~~~~~~-----------~~~Gd--~--Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 160 (400)
T Consensus 119 sTiGSSEAiMLGGlAmK~rWr~R~~~~Gk~~d~kKPNlv~g~~vQVCWEKF~RYfdVE~R~VP~~~r~r~~i~Pe~~~~~ 198 (493)
T TIGR01788 119 STIGSSEAIMLGGLAMKWRWRKRMKAAGKPADAKKPNLVMGSNVQVCWEKFARYFDVELREVPMDKRDRYVIDPEEVVDL 198 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 77325899998777757999999986388878788723607986164212203355401367207777601188999986
Q ss_pred CCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCCCC----CC-----CCCEEECCCCCCCCCCC---CCCCCCCCCCCCC
Q ss_conf 12212201211354210000123--33321112233----33-----32011101221100000---1223322211123
Q gi|254780602|r 161 ITPKTKWLFLNSPSNPSGVVYSQ--NRLRALADVLV----RN-----PHVHIISDDIYEHIVYR---NCQFSNIVNVEPS 226 (400)
Q Consensus 161 i~~~~k~i~l~nP~NPTG~v~s~--~~l~~i~~~~a----~~-----~~i~ii~De~Y~~l~~~---~~~~~s~~~~~~~ 226 (400)
T Consensus 199 vDENTIGV~~I-----LG~TyTG~yE~v~~lnD~L~~~~~~~PDWsg~d~PiHvDAASGGFi~PFGfekeh---mk~~PD 270 (493)
T TIGR01788 199 VDENTIGVVAI-----LGTTYTGEYEDVKALNDLLEELNAKTPDWSGWDIPIHVDAASGGFIAPFGFEKEH---MKVEPD 270 (493)
T ss_pred HCCCCCEEEEE-----CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC---EEECCC
T ss_conf 07675248887-----4723258708889999999997427887477876647744678811376635341---154571
Q ss_pred C-----CCEEEEEC-CCCC-CCCCCCCCCCCCCC------HHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCC---CCC
Q ss_conf 3-----32257414-6544-32234454442211------012268753100---1222332222222222223---467
Q gi|254780602|r 227 L-----YERTLVVN-GVSK-AYAMTGLRIGYAAG------ALSLIKSMIVLQ---GQQTSGACSIAQWAAVEAL---NGP 287 (400)
Q Consensus 227 ~-----~~~~i~~~-S~SK-~~~~~G~RiG~~v~------~~~li~~l~~~~---~~~~~~~~~~~q~a~~~~l---~~~ 287 (400)
T Consensus 271 l~WDFRLprV~SINvSGHKYGLvYPG--vGWViWRd~e~LPeELiF~vnYLGg~~~tFtLNFSrp~~qViaQYYnFlRLG 348 (493)
T TIGR01788 271 LEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLG 348 (493)
T ss_pred EEECCCCCCEEEECCCCCCCCCCCCC--CCEEEECCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 26566178246870465512464766--1268875811370131110110266565430135576231136446688504
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCC---CC-CEEEECCC--------------CEEEE-----EECCCCCCCCCCCCC--
Q ss_conf 6432222221100000002455304---77-60330274--------------08998-----626410233211332--
Q gi|254780602|r 288 QDFVVNNRKIFEYRRDLCVAQLQGV---PG-IRYMIPDG--------------AFYLY-----PSCQDLIGKKSPSGD-- 342 (400)
Q Consensus 288 ~~~~~~~~~~~~~~r~~~~~~L~~~---~g-~~~~~p~g--------------~~y~~-----~~~~~~~~~~~~~~~-- 342 (400)
T Consensus 349 ~~GYr~i~q~~~~vA~~La~~~~~~sklPG~Fe~~s-~g~~sienDsaPksvkDYWehPqaY~~~~P~VaFrLKd~~~~~ 427 (493)
T TIGR01788 349 REGYRKIMQNLLDVAQYLAEEIAKLSKLPGPFEILS-DGRESIENDSAPKSVKDYWEHPQAYKSGIPLVAFRLKDDADEE 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 013489999899999999999998606998458871-7875433456774012331364122789777988536877888
Q ss_pred -CCCCHHHHHHHHHHHCCEEEECCCCCCCC-C---E---EEEEEE--CCHHHHHHHHHHHHHHHHHC
Q ss_conf -24898999999998739799835022899-7---2---899962--99999999999999999860
Q gi|254780602|r 343 -VIRTDLDFVNGLLEIEKVAVVQGSSFGHG-P---S---IRISYA--VSDAILEEACVRIKRFCHSL 399 (400)
Q Consensus 343 -~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-~---~---iRis~~--~~~e~l~~al~rl~~~l~~l 399 (400)
T Consensus 428 Y~~Yt~~~ls~~L-R~rG-WiVPAYtlP~~~~GsDd~~v~RiVvRe~~~~d~A~~Li~D~~~~~~~L 492 (493)
T TIGR01788 428 YTGYTLYDLSHKL-RERG-WIVPAYTLPKNAEGSDDIEVLRIVVREDFSRDLAELLIEDLEKALAYL 492 (493)
T ss_pred CCCCCHHHHHHHH-HHCC-CCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8767899999985-0347-313478884335677872799998725898406999999999999971