HHsearch alignment for GI: 254780602 and conserved domain: TIGR01788

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=98.46  E-value=7.7e-08  Score=67.82  Aligned_cols=359  Identities=15%  Similarity=0.147  Sum_probs=190.9

Q ss_pred             HHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCC----CC-
Q ss_conf             999869972665658974988999999999998388---7569987789899999999864210133-33223----32-
Q gi|254780602|r   25 DLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERG---ETKYTAVAGISPLREAIVEKFRRDNDLH-YTSDQ----II-   95 (400)
Q Consensus        25 ~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~---~~~Y~~~~G~~~lR~aia~~~~~~~g~~-~~~e~----I~-   95 (400)
T Consensus        42 EL~LDGNprLNLAsFV~Tw-me~EA~KLm~e~~~KN~ID~dEYPqTar~i~~R--CVnM~a~LfhAp~~~D~~~~savGt  118 (493)
T TIGR01788        42 ELSLDGNPRLNLASFVTTW-MEPEAEKLMDETLNKNMIDKDEYPQTAREIENR--CVNMLADLFHAPALKDEEAASAVGT  118 (493)
T ss_pred             HCCCCCCHHHHHHCCCCCC-CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC--CEEHHHHHHCCCCCCCCCCCCCEEC
T ss_conf             4045776222321324787-776789999725577701100165448988504--3012344114787778775664351


Q ss_pred             CCCCCCCCCCCCCCCC-----------CCCCC--C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             3345433332222222-----------33223--2--2223333232222222222222222222223222103331000
Q gi|254780602|r   96 VGTGAKHVIFNALMAT-----------VNMGD--E--VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQA  160 (400)
Q Consensus        96 it~G~~~~l~~~~~~~-----------~~~Gd--~--Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (400)
T Consensus       119 sTiGSSEAiMLGGlAmK~rWr~R~~~~Gk~~d~kKPNlv~g~~vQVCWEKF~RYfdVE~R~VP~~~r~r~~i~Pe~~~~~  198 (493)
T TIGR01788       119 STIGSSEAIMLGGLAMKWRWRKRMKAAGKPADAKKPNLVMGSNVQVCWEKFARYFDVELREVPMDKRDRYVIDPEEVVDL  198 (493)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             77325899998777757999999986388878788723607986164212203355401367207777601188999986


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCCCC----CC-----CCCEEECCCCCCCCCCC---CCCCCCCCCCCCC
Q ss_conf             12212201211354210000123--33321112233----33-----32011101221100000---1223322211123
Q gi|254780602|r  161 ITPKTKWLFLNSPSNPSGVVYSQ--NRLRALADVLV----RN-----PHVHIISDDIYEHIVYR---NCQFSNIVNVEPS  226 (400)
Q Consensus       161 i~~~~k~i~l~nP~NPTG~v~s~--~~l~~i~~~~a----~~-----~~i~ii~De~Y~~l~~~---~~~~~s~~~~~~~  226 (400)
T Consensus       199 vDENTIGV~~I-----LG~TyTG~yE~v~~lnD~L~~~~~~~PDWsg~d~PiHvDAASGGFi~PFGfekeh---mk~~PD  270 (493)
T TIGR01788       199 VDENTIGVVAI-----LGTTYTGEYEDVKALNDLLEELNAKTPDWSGWDIPIHVDAASGGFIAPFGFEKEH---MKVEPD  270 (493)
T ss_pred             HCCCCCEEEEE-----CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC---EEECCC
T ss_conf             07675248887-----4723258708889999999997427887477876647744678811376635341---154571


Q ss_pred             C-----CCEEEEEC-CCCC-CCCCCCCCCCCCCC------HHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCC---CCC
Q ss_conf             3-----32257414-6544-32234454442211------012268753100---1222332222222222223---467
Q gi|254780602|r  227 L-----YERTLVVN-GVSK-AYAMTGLRIGYAAG------ALSLIKSMIVLQ---GQQTSGACSIAQWAAVEAL---NGP  287 (400)
Q Consensus       227 ~-----~~~~i~~~-S~SK-~~~~~G~RiG~~v~------~~~li~~l~~~~---~~~~~~~~~~~q~a~~~~l---~~~  287 (400)
T Consensus       271 l~WDFRLprV~SINvSGHKYGLvYPG--vGWViWRd~e~LPeELiF~vnYLGg~~~tFtLNFSrp~~qViaQYYnFlRLG  348 (493)
T TIGR01788       271 LEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLG  348 (493)
T ss_pred             EEECCCCCCEEEECCCCCCCCCCCCC--CCEEEECCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             26566178246870465512464766--1268875811370131110110266565430135576231136446688504


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCC---CC-CEEEECCC--------------CEEEE-----EECCCCCCCCCCCCC--
Q ss_conf             6432222221100000002455304---77-60330274--------------08998-----626410233211332--
Q gi|254780602|r  288 QDFVVNNRKIFEYRRDLCVAQLQGV---PG-IRYMIPDG--------------AFYLY-----PSCQDLIGKKSPSGD--  342 (400)
Q Consensus       288 ~~~~~~~~~~~~~~r~~~~~~L~~~---~g-~~~~~p~g--------------~~y~~-----~~~~~~~~~~~~~~~--  342 (400)
T Consensus       349 ~~GYr~i~q~~~~vA~~La~~~~~~sklPG~Fe~~s-~g~~sienDsaPksvkDYWehPqaY~~~~P~VaFrLKd~~~~~  427 (493)
T TIGR01788       349 REGYRKIMQNLLDVAQYLAEEIAKLSKLPGPFEILS-DGRESIENDSAPKSVKDYWEHPQAYKSGIPLVAFRLKDDADEE  427 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf             013489999899999999999998606998458871-7875433456774012331364122789777988536877888


Q ss_pred             -CCCCHHHHHHHHHHHCCEEEECCCCCCCC-C---E---EEEEEE--CCHHHHHHHHHHHHHHHHHC
Q ss_conf             -24898999999998739799835022899-7---2---899962--99999999999999999860
Q gi|254780602|r  343 -VIRTDLDFVNGLLEIEKVAVVQGSSFGHG-P---S---IRISYA--VSDAILEEACVRIKRFCHSL  399 (400)
Q Consensus       343 -~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~-~---~---iRis~~--~~~e~l~~al~rl~~~l~~l  399 (400)
T Consensus       428 Y~~Yt~~~ls~~L-R~rG-WiVPAYtlP~~~~GsDd~~v~RiVvRe~~~~d~A~~Li~D~~~~~~~L  492 (493)
T TIGR01788       428 YTGYTLYDLSHKL-RERG-WIVPAYTLPKNAEGSDDIEVLRIVVREDFSRDLAELLIEDLEKALAYL  492 (493)
T ss_pred             CCCCCHHHHHHHH-HHCC-CCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8767899999985-0347-313478884335677872799998725898406999999999999971