HHsearch alignment for GI: 254780602 and conserved domain: TIGR03246
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.64 E-value=5.3e-15 Score=111.43 Aligned_cols=337 Identities=15% Similarity=0.162 Sum_probs=187.8
Q ss_pred HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86997266565897--498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r 28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI 104 (400)
Q Consensus 28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l 104 (400)
T Consensus 32 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~--~~~~~~~~~~~~~la~~L~~~~----~~~~v~f~~sGsEA~ 105 (397)
T TIGR03246 32 QQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLW--HIGNGYTNEPVLRLAKKLVDAT----FADKVFFCNSGAEAN 105 (397)
T ss_pred CCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHHC----CCCEEEECCCHHHHH
T ss_conf 9879999946348766557898899999999996577--7768634889999999997514----877699728677899
Q ss_pred CCCCCCCC-------CCC-CCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCC--CCHHHHHHCCCCCCCCCEEE
Q ss_conf 22222223-------322-32222333323222222222222222----222222322--21033310001221220121
Q gi|254780602|r 105 FNALMATV-------NMG-DEVLIPRPYWVSYPDMVALCGGIPVF----VDTQQDDNF--QVSPEKLEQAITPKTKWLFL 170 (400)
Q Consensus 105 ~~~~~~~~-------~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~----v~~~~~~~~--~~d~~~l~~~i~~~~k~i~l 170 (400)
T Consensus 106 e~AlklAr~~~~~~~~~~k~~iis~~~~yHG~t~~~~s~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~iaAvi~ 185 (397)
T TIGR03246 106 EAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISDKTCAVIV 185 (397)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCEEEEEE
T ss_conf 99999999999851799976899972786898564104689965567888999764204523399999852887379999
Q ss_pred CCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 135-4210000-12333321112233333201110122110000012233-22211123332257414654432234454
Q gi|254780602|r 171 NSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIVNVEPSLYERTLVVNGVSKAYAMTGLR 247 (400)
Q Consensus 171 ~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~~~~~~~~~~~i~~~S~SK~~~~~G~R 247 (400)
T Consensus 186 -EPv~g~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PD-----iv~--~gK~l~-gG~P 255 (397)
T TIGR03246 186 -EPIQGEGGVVPADPAFLKGLRELC-DRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD-----ILT--SAKALG-GGFP 255 (397)
T ss_pred -ECCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEECCCEEECCCCCCCCCHHHCCCCCCC-----EEE--ECCCCC-CCCE
T ss_conf -387788898738889999999999-985935863412207877778314322698998-----788--742246-8840
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCC----CCCEEEECC
Q ss_conf 4422110122687531001222332222222222223467--6432222221100000002455304----776033027
Q gi|254780602|r 248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGP--QDFVVNNRKIFEYRRDLCVAQLQGV----PGIRYMIPD 321 (400)
Q Consensus 248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~~~~~L~~~----~g~~~~~p~ 321 (400)
T Consensus 256 ~sav~~~~~i~~~~~~~~h~~T~~gnpl~~aaala~L~~i~~e~l~~----~~~~~g~~l~~~L~~l~~~~~~i~~VRG~ 331 (397)
T TIGR03246 256 IGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLA----GVKQRHDLFVDGLEKINARYNVFSEIRGK 331 (397)
T ss_pred EEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 48997448888651877738668829999999999999998547999----99999999999999987417987754224
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf 40899862641023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r 322 GAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL 399 (400)
Q Consensus 322 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l 399 (400)
T Consensus 332 -Glm~giel~~~---------~~~~a~~i~~~~~-~~Gll~~~~g----~n~lrl~PPL~it~eeid~~l~~l~~al~~v 396 (397)
T TIGR03246 332 -GLLIGAVLTEA---------YQGKAKQFVNAAA-EEGVIALIAG----PNVVRFAPSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred -CEEEEEEECCC---------CCCHHHHHHHHHH-HCCCEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -35999997278---------6335999999999-7892893079----9979997885189999999999999999986