HHsearch alignment for GI: 254780602 and conserved domain: TIGR03538
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00 E-value=0 Score=620.03 Aligned_cols=375 Identities=25% Similarity=0.439 Sum_probs=337.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHH-HHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 78898738975899999999999-98699726656589749889999999999983887569987789899999999864
Q gi|254780602|r 4 ISNILRRVQPSATLVAAQRVRDL-RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR 82 (400)
Q Consensus 4 ~s~~~~~l~~s~~~~~~~~~~~~-~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~ 82 (400)
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~iI~L~iG~Pd~~~P~~v~ea~~~al~-~~~~Y~~~~G~~~LReAia~~~~ 79 (394)
T TIGR03538 1 MNPNLDRLQPYPFEKLAALLAGVTPPASLPPIALSIGEPKHATPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLE 79 (394)
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99456347998799999999600340899878784888999977999999999843-88899999886999999999999
Q ss_pred HHCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 21013--33322-3323345433332222222332232--2223333232222222222222222222223222103331
Q gi|254780602|r 83 RDNDL--HYTSD-QIIVGTGAKHVIFNALMATVNMGDE--VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKL 157 (400)
Q Consensus 83 ~~~g~--~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~--Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 157 (400)
T Consensus 80 ~~~~~~~~~dp~~~I~vt~Ga~~al~~~~~~l~~pGd~~~V~~p~P~Y~~y~~~~~~~g~~~~~v~~~~e~~~~~d~~~l 159 (394)
T TIGR03538 80 RRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAV 159 (394)
T ss_pred HHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCHHHH
T ss_conf 97398877896776998988899999999997299981089947886645299999759989975867345888899999
Q ss_pred HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCC----CCCCCCCCEEE
Q ss_conf 0001221220121135421000012333321112233333201110122110000012233-222----11123332257
Q gi|254780602|r 158 EQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIV----NVEPSLYERTL 232 (400)
Q Consensus 158 ~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~----~~~~~~~~~~i 232 (400)
T Consensus 160 ~~~~~~~tk~iil~sP~NPTG~v~s~~~l~~l~~~a-~~~~i~iisDE~Y~~l~~d~~~~p~~~~~~~~~~~~~~~~~~i 238 (394)
T TIGR03538 160 PESVWRRCQLLFVCSPGNPTGAVLSLETLKKLIELA-DQYGFIIASDECYSELYFDEANPPAGLLQAAAALGRDDFRRCL 238 (394)
T ss_pred HHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 874523665999889999989777879999999997-3267699980683327857888973787777662544447679
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 41465443223445444221101226875310012223322222222222234676432222221100000002455304
Q gi|254780602|r 233 VVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV 312 (400)
Q Consensus 233 ~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~ 312 (400)
T Consensus 239 ~~~S~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~aa~~-~~~~~~~~r~~~~~r~~~~~~~L~~~ 317 (394)
T TIGR03538 239 VFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPPPTQLASIAAWN-DEQHVRENRALYREKFAAVLEILGPV 317 (394)
T ss_pred EEECCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99556544454675179995799999999985223742689999999999848-98999999999999999999986427
Q ss_pred CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--------CCEEEEEEECCHHH
Q ss_conf 7760330274089986264102332113322489899999999873979983502289--------97289996299999
Q gi|254780602|r 313 PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--------GPSIRISYAVSDAI 384 (400)
Q Consensus 313 ~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--------~~~iRis~~~~~e~ 384 (400)
T Consensus 318 --~~~~~P~Gg~y~w~~~~-------------~~~~~f~~~ll~e~gV~v~PG~~F~~~~~~~~~G~g~iR~s~~~~~e~ 382 (394)
T TIGR03538 318 --LDLELPDAGFYLWPKVP-------------GDDEAFARALYEEENVTVLPGRYLSREAEGVNPGAGRVRIALVAPLEE 382 (394)
T ss_pred --CCCCCCCEEEEEEEECC-------------CCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf --96257985489999689-------------999999999998689999877341655457888999899997598999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780602|r 385 LEEACVRIKRFC 396 (400)
Q Consensus 385 l~~al~rl~~~l 396 (400)
T Consensus 383 l~ea~~Rl~~fl 394 (394)
T TIGR03538 383 CVEAAERIRRFI 394 (394)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999869