HHsearch alignment for GI: 254780602 and conserved domain: TIGR03538

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00  E-value=0  Score=620.03  Aligned_cols=375  Identities=25%  Similarity=0.439  Sum_probs=337.2

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHH-HHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             78898738975899999999999-98699726656589749889999999999983887569987789899999999864
Q gi|254780602|r    4 ISNILRRVQPSATLVAAQRVRDL-RSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFR   82 (400)
Q Consensus         4 ~s~~~~~l~~s~~~~~~~~~~~~-~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~   82 (400)
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~iI~L~iG~Pd~~~P~~v~ea~~~al~-~~~~Y~~~~G~~~LReAia~~~~   79 (394)
T TIGR03538         1 MNPNLDRLQPYPFEKLAALLAGVTPPASLPPIALSIGEPKHATPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLE   79 (394)
T ss_pred             CCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99456347998799999999600340899878784888999977999999999843-88899999886999999999999


Q ss_pred             HHCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             21013--33322-3323345433332222222332232--2223333232222222222222222222223222103331
Q gi|254780602|r   83 RDNDL--HYTSD-QIIVGTGAKHVIFNALMATVNMGDE--VLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKL  157 (400)
Q Consensus        83 ~~~g~--~~~~e-~I~it~G~~~~l~~~~~~~~~~Gd~--Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  157 (400)
T Consensus        80 ~~~~~~~~~dp~~~I~vt~Ga~~al~~~~~~l~~pGd~~~V~~p~P~Y~~y~~~~~~~g~~~~~v~~~~e~~~~~d~~~l  159 (394)
T TIGR03538        80 RRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAV  159 (394)
T ss_pred             HHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCHHHH
T ss_conf             97398877896776998988899999999997299981089947886645299999759989975867345888899999


Q ss_pred             HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCC----CCCCCCCCEEE
Q ss_conf             0001221220121135421000012333321112233333201110122110000012233-222----11123332257
Q gi|254780602|r  158 EQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFS-NIV----NVEPSLYERTL  232 (400)
Q Consensus       158 ~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~-s~~----~~~~~~~~~~i  232 (400)
T Consensus       160 ~~~~~~~tk~iil~sP~NPTG~v~s~~~l~~l~~~a-~~~~i~iisDE~Y~~l~~d~~~~p~~~~~~~~~~~~~~~~~~i  238 (394)
T TIGR03538       160 PESVWRRCQLLFVCSPGNPTGAVLSLETLKKLIELA-DQYGFIIASDECYSELYFDEANPPAGLLQAAAALGRDDFRRCL  238 (394)
T ss_pred             HHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf             874523665999889999989777879999999997-3267699980683327857888973787777662544447679


Q ss_pred             EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             41465443223445444221101226875310012223322222222222234676432222221100000002455304
Q gi|254780602|r  233 VVNGVSKAYAMTGLRIGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV  312 (400)
Q Consensus       233 ~~~S~SK~~~~~G~RiG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~  312 (400)
T Consensus       239 ~~~S~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~aa~~-~~~~~~~~r~~~~~r~~~~~~~L~~~  317 (394)
T TIGR03538       239 VFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPPPTQLASIAAWN-DEQHVRENRALYREKFAAVLEILGPV  317 (394)
T ss_pred             EEECCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99556544454675179995799999999985223742689999999999848-98999999999999999999986427


Q ss_pred             CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--------CCEEEEEEECCHHH
Q ss_conf             7760330274089986264102332113322489899999999873979983502289--------97289996299999
Q gi|254780602|r  313 PGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--------GPSIRISYAVSDAI  384 (400)
Q Consensus       313 ~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--------~~~iRis~~~~~e~  384 (400)
T Consensus       318 --~~~~~P~Gg~y~w~~~~-------------~~~~~f~~~ll~e~gV~v~PG~~F~~~~~~~~~G~g~iR~s~~~~~e~  382 (394)
T TIGR03538       318 --LDLELPDAGFYLWPKVP-------------GDDEAFARALYEEENVTVLPGRYLSREAEGVNPGAGRVRIALVAPLEE  382 (394)
T ss_pred             --CCCCCCCEEEEEEEECC-------------CCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf             --96257985489999689-------------999999999998689999877341655457888999899997598999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|254780602|r  385 LEEACVRIKRFC  396 (400)
Q Consensus       385 l~~al~rl~~~l  396 (400)
T Consensus       383 l~ea~~Rl~~fl  394 (394)
T TIGR03538       383 CVEAAERIRRFI  394 (394)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999869