HHsearch alignment for GI: 254780602 and conserved domain: TIGR03539
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00 E-value=0 Score=556.89 Aligned_cols=351 Identities=23% Similarity=0.312 Sum_probs=308.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CC
Q ss_conf 89758999999999999869972665658974988999999999998388756998778989999999986421013-33
Q gi|254780602|r 11 VQPSATLVAAQRVRDLRSKGIDVLCLTAGEPDFDMPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDL-HY 89 (400)
Q Consensus 11 l~~s~~~~~~~~~~~~~~~g~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~-~~ 89 (400)
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~vI~L~iG~Pd~p~p~~i~~a~~~a~~~--~~Y~~~~G~~eLReaia~~~~~~~g~~~~ 78 (357)
T TIGR03539 1 LPDFPWDSLAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAADA--PGYPQTWGTPELREAIVDWLERRRGVPGL 78 (357)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 9987599999999988868999288879999999899999999971247--99899847799999999999997199979
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCE
Q ss_conf 3223323345433332222222-332232222333323222222222222222222222322210333100012212201
Q gi|254780602|r 90 TSDQIIVGTGAKHVIFNALMAT-VNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWL 168 (400)
Q Consensus 90 ~~e~I~it~G~~~~l~~~~~~~-~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i 168 (400)
T Consensus 79 ~~~~I~vt~G~~~al~~l~~~l~~~pGD~Vli~~P~y~~y~~~~~~~g~~~v~~d------------~~~~~~~~~~k~i 146 (357)
T TIGR03539 79 DPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD------------DPTELDPVGPDLI 146 (357)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEECC------------CHHHCCCCCCEEE
T ss_conf 9575998688799999999997079999899788877008999998599898238------------8666797785499
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 21135421000012333321112233333201110122110000012233222-11123332257414654432234454
Q gi|254780602|r 169 FLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIV-NVEPSLYERTLVVNGVSKAYAMTGLR 247 (400)
Q Consensus 169 ~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~-~~~~~~~~~~i~~~S~SK~~~~~G~R 247 (400)
T Consensus 147 ~l~~P~NPTG~v~s~~~l~~l~~~a-~~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~~~~~G~R 225 (357)
T TIGR03539 147 WLNSPGNPTGRVLSVDELRAIVAWA-RERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYR 225 (357)
T ss_pred EECCCCCCCHHCCCHHHHHHHHHHC-CCCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCE
T ss_conf 9899989623208288999998732-055589952332476535898843028645376757679996153100455612
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEE
Q ss_conf 44221101226875310012223322222222222234676432222221100000002455304776033027408998
Q gi|254780602|r 248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLY 327 (400)
Q Consensus 248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~ 327 (400)
T Consensus 226 iG~~~~~~~li~~l~~~~~~~~~~~~~~~q~a~~~al~~-~~~~~~~~~~~~~rr~~l~~~L~~~-g~~~~~p~g~~y~~ 303 (357)
T TIGR03539 226 AGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGD-DGHVAEQKARYAARRAQLKPALEKA-GFRIDHSEAGLYLW 303 (357)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCEEEEEE
T ss_conf 899967999999999999856777889999999999569-2789999999999999999999857-97762688069998
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--CCEEEEEEECCHHHHHHHHHHH
Q ss_conf 6264102332113322489899999999873979983502289--9728999629999999999999
Q gi|254780602|r 328 PSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--GPSIRISYAVSDAILEEACVRI 392 (400)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~~~iRis~~~~~e~l~~al~rl 392 (400)
T Consensus 304 ~~~~-------------~~~~~~~~~l-~e~gV~v~PG~~Fg~~g~~~vRis~~~~~e~l~eal~Rl 356 (357)
T TIGR03539 304 ATRG-------------EDAWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred EECC-------------CCHHHHHHHH-HHCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHC
T ss_conf 7589-------------9999999999-969989947874478999979999729999999999857