>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

Probab=100.00 E-value=0 Score=582.62 Aligned_cols=372 Identities=23% Similarity=0.292 Sum_probs=318.3 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHHCC--CCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-----CCCCCCCCCHHH Q ss_conf 367889873897-58999999999999869--9726656589749889999999999983887-----569987789899 Q gi|254780602|r 2 VFISNILRRVQP-SATLVAAQRVRDLRSKG--IDVLCLTAGEPDFDMPENVKYAVVRAMERGE-----TKYTAVAGISPL 73 (400) Q Consensus 2 ~~~s~~~~~l~~-s~~~~~~~~~~~~~~~g--~~ii~l~~G~p~~~~p~~i~~a~~~al~~~~-----~~Y~~~~G~~~l 73 (400) T Consensus 1 ~~~~~~~~~~~~~y~f~~i~~~~~~~~~~~~~~dvI~L~iGePdf~~P~~i~~a~~~ai~~~~~~~~~~gY~~~~G~~~L 80 (402) T TIGR03542 1 MKRNPHFLKLKSGYLFSEINRRVNEFRKKNPSASVIRLGIGDTTQPLPASVIEAFHEAVDELASEETYRGYGPEQGLPAL 80 (402) T ss_pred CCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH T ss_conf 98586655578998608999999999985889985589899989998999999999999712246786777974064999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------- Q ss_conf 999999864210133332233233454333322222223322322223333232222222222222222222-------- Q gi|254780602|r 74 REAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPYWVSYPDMVALCGGIPVFVDTQ-------- 145 (400) Q Consensus 74 R~aia~~~~~~~g~~~~~e~I~it~G~~~~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~-------- 145 (400) T Consensus 81 Reaia~~~---~~~~~~~d~I~vt~Ga~~~l~~-l~a~l~pGD~Vii~~P~y~~Y~~~~~~~g~~~~~~~~~~~~~~~~~ 156 (402) T TIGR03542 81 REAIAEND---YRGRISPEEIFISDGAKCDIGR-LQSIFGSDNTVAVQDPVYPAYVDTAVMTGRAGFADDTGQYRGIVYL 156 (402) T ss_pred HHHHHHHH---HCCCCCHHHEEECCCCHHHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEC T ss_conf 99999997---5689988996777782999999-9998399998998388881579999985995301356655672567 Q ss_pred ---CCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC Q ss_conf ---22322210333100012212201211354210000123333211122333332011101221100000122332221 Q gi|254780602|r 146 ---QDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVN 222 (400) Q Consensus 146 ---~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~ 222 (400) T Consensus 157 ~~~~e~~~~~~~~~-----~~ktk~iiln~P~NPTG~v~s~eel~~i~~la-~~~~i~iIsDEiY~~~~~~~~~~~s~~~ 230 (402) T TIGR03542 157 PCTKENGFIPELPE-----ERKIDIIYLCSPNNPTGTVLTKEQLKELVDYA-NAHGSLILFDAAYSAFISDPSIPHSIYE 230 (402) T ss_pred CCCHHHCCCCCCCC-----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEECCCHHHHHCCCCCCCCCEE T ss_conf 67624385722234-----55735999899979887568999999999998-7507079602228876168987620111 Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHH--------HHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC Q ss_conf 112333225741465443223445444221101226--------87531001222332222222222223467-643222 Q gi|254780602|r 223 VEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSLI--------KSMIVLQGQQTSGACSIAQWAAVEALNGP-QDFVVN 293 (400) Q Consensus 223 ~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~li--------~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~ 293 (400) T Consensus 231 ~-~~~~~~~I~i~S~SK~~~m~G~RiG~~i~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~aal~~~~~~~~~~ 309 (402) T TIGR03542 231 I-EGAKECAIEINSFSKSLGFTGVRLGWTVVPKELTYADGHSVIQDWERRLCTTFNGASYPVQRAAEAAYAGEGLQPILE 309 (402) T ss_pred C-CCCCCEEEECCCCCCCCCCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHH T ss_conf 3-665213673167624027834054021125877542279999999999876257755999999999973788599999 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCC--C Q ss_conf 22211000000024553047760330274089986264102332113322489899999999873979983502289--9 Q gi|254780602|r 294 NRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGH--G 371 (400) Q Consensus 294 ~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~--~ 371 (400) T Consensus 310 ~~~~~~~~~~~l~~~l~~-~g~~~~~~~ga~yl~~~~~~-----------~~~~~~~~~~ll~e~~V~vvPG~~FG~~g~ 377 (402) T TIGR03542 310 AISYYMENARILREALEA-AGFKVYGGENAPYLWVKTPE-----------GISSWDFFDFLLYQYHIVGTPGSGFGSSGE 377 (402) T ss_pred HHHHHHHHHHHHHHHHHH-CCCEEECCCCCEEEEEECCC-----------CCCHHHHHHHHHHHCCEEEECCHHHCCCCC T ss_conf 999999999999998875-69576079973489787899-----------989899999999859999976447689998 Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHH Q ss_conf 7289996299999999999999999 Q gi|254780602|r 372 PSIRISYAVSDAILEEACVRIKRFC 396 (400) Q Consensus 372 ~~iRis~~~~~e~l~~al~rl~~~l 396 (400) T Consensus 378 g~vRls~a~~~e~l~ea~~Rl~~~L 402 (402) T TIGR03542 378 GFVRFSAFGKRENIVAACERIKHAL 402 (402) T ss_pred CEEEEEEECCHHHHHHHHHHHHHHC T ss_conf 9699997299999999999999759

HHsearch alignment for GI: 254780602 and conserved domain: TIGR03542