HHsearch alignment for GI: 254780602 and conserved domain: TIGR03576
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.77 E-value=5.7e-18 Score=129.50 Aligned_cols=305 Identities=18% Similarity=0.182 Sum_probs=193.4
Q ss_pred HHHCCCC-EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9986997-2665658974988999999999998388756998-7789899999999864210133332233233454333
Q gi|254780602|r 26 LRSKGID-VLCLTAGEPDFDMPENVKYAVVRAMERGETKYTA-VAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHV 103 (400)
Q Consensus 26 ~~~~g~~-ii~l~~G~p~~~~p~~i~~a~~~al~~~~~~Y~~-~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~ 103 (400)
T Consensus 18 i~~~gr~~lyDltGLsggf~i~~~~~~Lle--------TYvGpaif~ek~~~~g~~H----lgG--~~e~~v~~NRTSsa 83 (346)
T TIGR03576 18 ISRGGRDSLYDLTGLAGGFKIDEEDLELLE--------TYVGPAIFEEKVQELGREH----LGG--PEEKILVFNRTSSA 83 (346)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHH--------HHHCCHHHHHHHHHHHHHH----CCC--CCCEEEEECCCHHH
T ss_conf 851486642103445678443786888999--------7505087699999999987----399--83257774562699
Q ss_pred CCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 3222222233223222233---3323222222222222222222222322210333100012212201211354210000
Q gi|254780602|r 104 IFNALMATVNMGDEVLIPR---PYWVSYPDMVALCGGIPVFVDTQQDDNFQVSPEKLEQAITPKTKWLFLNSPSNPSGVV 180 (400)
Q Consensus 104 l~~~~~~~~~~Gd~Vlv~~---P~y~~y~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~k~i~l~nP~NPTG~v 180 (400)
T Consensus 84 ilAtIlaL~~~~~~Vvh~vPe~paHPSI~rsc~lagaey~E~d---------~~~el~~~---d~~slvviTgstmd~~v 151 (346)
T TIGR03576 84 ILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEYFESD---------ELSELKKI---DGTSLVVITGSTMDLKV 151 (346)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCEEECC---------CHHHHCCC---CCCCEEEEECCCCCCEE
T ss_conf 9999998357887058978787899973020051487147506---------67762767---88718999378777300
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCC---CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 12333321112233333201110122110---000012233222111233322574146544322344544422110122
Q gi|254780602|r 181 YSQNRLRALADVLVRNPHVHIISDDIYEH---IVYRNCQFSNIVNVEPSLYERTLVVNGVSKAYAMTGLRIGYAAGALSL 257 (400)
Q Consensus 181 ~s~~~l~~i~~~~a~~~~i~ii~De~Y~~---l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~l 257 (400)
T Consensus 152 i~~d~~k~vI~~-Ak~~~a~V~vDDAsGARvR~L~gq~~---al~l--G---ADLvVTS~DKl--M~GPR~GlLaG~~eL 220 (346)
T TIGR03576 152 VSEEDLKRVIKQ-AKSKEAIVLVDDASGARVRRLYGQPP---ALDL--G---ADLVVTSTDKL--MDGPRGGLLAGRKEL 220 (346)
T ss_pred CCHHHHHHHHHH-HHHCCCEEEEECCCCCCHHHHCCCCC---CCCC--C---CCEEEEEHHHC--CCCCCCCEECCCHHH
T ss_conf 457889999999-87469849985488875166519998---6555--6---42688400212--667754112288899
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCC
Q ss_conf 68753100122233222222222222346764322222211000000024553047760330274089986264102332
Q gi|254780602|r 258 IKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKK 337 (400)
Q Consensus 258 i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~ 337 (400)
T Consensus 221 V~ki~~~~~~~GlEaq~Pi~aAmv~aLe~f~--~~~l~~a~~r~~~~~l~~~---~~l~~e~TptGf-~ik~~~------ 288 (346)
T TIGR03576 221 VDKIKSVGEQFGLEAQAPLLAAVVRALEEFE--LSRIRDAFKRKEEVYLRLF---DKLNVERTPTGF-VIKGVE------ 288 (346)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHH---HCCCCCCCCCEE-EEECCC------
T ss_conf 9999999875277778415999999997079--9999999999999887653---035743278537-985656------
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCEEEECCCCC-CCCCEEEEEEEC-CHHHH
Q ss_conf 1133224898999999998739799835022-899728999629-99999
Q gi|254780602|r 338 SPSGDVIRTDLDFVNGLLEIEKVAVVQGSSF-GHGPSIRISYAV-SDAIL 385 (400)
Q Consensus 338 ~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~F-g~~~~iRis~~~-~~e~l 385 (400)
T Consensus 289 ------~e~~~~~~~~LL~~ygIiTIta~GmpgasktlR~d~~skDAeri 332 (346)
T TIGR03576 289 ------EEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERI 332 (346)
T ss_pred ------HHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEECCCHHHH
T ss_conf ------88889999999997694898347788876326876202516551