HHsearch alignment for GI: 254780602 and conserved domain: cd00613

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.31  E-value=3.7e-12  Score=94.12  Aligned_cols=288  Identities=16%  Similarity=0.177  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHCCC----CEEECCCCCCCCCCCHHHHHHHHHH-HHCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999998699----7266565897498899999999999-8388756998--7789899999999864210133332
Q gi|254780602|r   19 AAQRVRDLRSKGI----DVLCLTAGEPDFDMPENVKYAVVRA-MERGETKYTA--VAGISPLREAIVEKFRRDNDLHYTS   91 (400)
Q Consensus        19 ~~~~~~~~~~~g~----~ii~l~~G~p~~~~p~~i~~a~~~a-l~~~~~~Y~~--~~G~~~lR~aia~~~~~~~g~~~~~   91 (400)
T Consensus         4 ~~rh~~~L~~kN~~~~~~~~flG~g~y~h~~p~~v~~~~~r~ef~t~ytpyq~E~sQG~Lq~~~e~Qs~i~eLtGmdv~n   83 (398)
T cd00613           4 VLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVAN   83 (398)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999966768686715674602562338898987386767146999896886999999999999999986888356


Q ss_pred             CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             23323345433---332222222332232222333323222222222----22222222222232221033310001221
Q gi|254780602|r   92 DQIIVGTGAKH---VIFNALMATVNMGDEVLIPRPYWVSYPDMVALC----GGIPVFVDTQQDDNFQVSPEKLEQAITPK  164 (400)
Q Consensus        92 e~I~it~G~~~---~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~i~~~  164 (400)
T Consensus        84 a--Sl~d~a~A~aEa~~ma~~~~~~~r~~vlv~~~~hp~~~~v~~t~~~~~g~~i~~v~~~~~G--~~d~~~l~~~~~~~  159 (398)
T cd00613          84 A--SLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGG--TVDLEALKEEVSEE  159 (398)
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC--CCCHHHHHHHCCCC
T ss_conf             3--2687677999999999998626899899778778036999999861258658994266677--74658888750788


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC---
Q ss_conf             22012113542100001233332111223333320111012211000001223322211123332257414654432---
Q gi|254780602|r  165 TKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY---  241 (400)
Q Consensus       165 ~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~---  241 (400)
T Consensus       160 ~a~v~v~~Pn-~~G~~e--~~~~~i~~~~-h~~gal~~~~~~--~~~l~~l~-------~Pg~~GaDI~~g~~q~~g~P~  226 (398)
T cd00613         160 VAALMVQYPN-TLGVFE--DLIKEIADIA-HSAGALVYVDGD--NLNLTGLK-------PPGEYGADIVVGNLQKTGVPH  226 (398)
T ss_pred             EEEEEECCCC-CCEEEE--CCHHHHHHHH-HHCCCEEEEEEC--CHHHHCCC-------CCCCCCCCEEEECCCCCCCCC
T ss_conf             5999952799-962785--1999999999-875986999744--03531555-------710047877985251146656


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHC-C---------------------------CCCCCCCC-CCCCCCCCCC-CCCCCCC
Q ss_conf             234454442211012268753100-1---------------------------22233222-2222222223-4676432
Q gi|254780602|r  242 AMTGLRIGYAAGALSLIKSMIVLQ-G---------------------------QQTSGACS-IAQWAAVEAL-NGPQDFV  291 (400)
Q Consensus       242 ~~~G~RiG~~v~~~~li~~l~~~~-~---------------------------~~~~~~~~-~~q~a~~~~l-~~~~~~~  291 (400)
T Consensus       227 ~~GGP~~G~~a~~~~l~r~lPgrivg~t~D~~G~~~~~ltlqtreqhIrRekatsnict~qal~al~a~~Y~~~lG~~GL  306 (398)
T cd00613         227 GGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGL  306 (398)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             66887443266799877358998565047888874215441354333677752881643278999999999998488638


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEE
Q ss_conf             2222211000000024553047760330274089
Q gi|254780602|r  292 VNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFY  325 (400)
Q Consensus       292 ~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y  325 (400)
T Consensus       307 ~~va~~~~~~A~Yl~~~L~~~~~~~~--~~~~~f  338 (398)
T cd00613         307 KEIAERAHLNANYLAKRLKEVGGVLP--FNGPFF  338 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCEE
T ss_conf             89999999999999999986389826--899866