HHsearch alignment for GI: 254780602 and conserved domain: cd00613
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.31 E-value=3.7e-12 Score=94.12 Aligned_cols=288 Identities=16% Similarity=0.177 Sum_probs=161.5
Q ss_pred HHHHHHHHHHCCC----CEEECCCCCCCCCCCHHHHHHHHHH-HHCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999998699----7266565897498899999999999-8388756998--7789899999999864210133332
Q gi|254780602|r 19 AAQRVRDLRSKGI----DVLCLTAGEPDFDMPENVKYAVVRA-MERGETKYTA--VAGISPLREAIVEKFRRDNDLHYTS 91 (400)
Q Consensus 19 ~~~~~~~~~~~g~----~ii~l~~G~p~~~~p~~i~~a~~~a-l~~~~~~Y~~--~~G~~~lR~aia~~~~~~~g~~~~~ 91 (400)
T Consensus 4 ~~rh~~~L~~kN~~~~~~~~flG~g~y~h~~p~~v~~~~~r~ef~t~ytpyq~E~sQG~Lq~~~e~Qs~i~eLtGmdv~n 83 (398)
T cd00613 4 VLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVAN 83 (398)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999966768686715674602562338898987386767146999896886999999999999999986888356
Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 23323345433---332222222332232222333323222222222----22222222222232221033310001221
Q gi|254780602|r 92 DQIIVGTGAKH---VIFNALMATVNMGDEVLIPRPYWVSYPDMVALC----GGIPVFVDTQQDDNFQVSPEKLEQAITPK 164 (400)
Q Consensus 92 e~I~it~G~~~---~l~~~~~~~~~~Gd~Vlv~~P~y~~y~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 164 (400)
T Consensus 84 a--Sl~d~a~A~aEa~~ma~~~~~~~r~~vlv~~~~hp~~~~v~~t~~~~~g~~i~~v~~~~~G--~~d~~~l~~~~~~~ 159 (398)
T cd00613 84 A--SLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGG--TVDLEALKEEVSEE 159 (398)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC--CCCHHHHHHHCCCC
T ss_conf 3--2687677999999999998626899899778778036999999861258658994266677--74658888750788
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC---
Q ss_conf 22012113542100001233332111223333320111012211000001223322211123332257414654432---
Q gi|254780602|r 165 TKWLFLNSPSNPSGVVYSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSNIVNVEPSLYERTLVVNGVSKAY--- 241 (400)
Q Consensus 165 ~k~i~l~nP~NPTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~--- 241 (400)
T Consensus 160 ~a~v~v~~Pn-~~G~~e--~~~~~i~~~~-h~~gal~~~~~~--~~~l~~l~-------~Pg~~GaDI~~g~~q~~g~P~ 226 (398)
T cd00613 160 VAALMVQYPN-TLGVFE--DLIKEIADIA-HSAGALVYVDGD--NLNLTGLK-------PPGEYGADIVVGNLQKTGVPH 226 (398)
T ss_pred EEEEEECCCC-CCEEEE--CCHHHHHHHH-HHCCCEEEEEEC--CHHHHCCC-------CCCCCCCCEEEECCCCCCCCC
T ss_conf 5999952799-962785--1999999999-875986999744--03531555-------710047877985251146656
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHC-C---------------------------CCCCCCCC-CCCCCCCCCC-CCCCCCC
Q ss_conf 234454442211012268753100-1---------------------------22233222-2222222223-4676432
Q gi|254780602|r 242 AMTGLRIGYAAGALSLIKSMIVLQ-G---------------------------QQTSGACS-IAQWAAVEAL-NGPQDFV 291 (400)
Q Consensus 242 ~~~G~RiG~~v~~~~li~~l~~~~-~---------------------------~~~~~~~~-~~q~a~~~~l-~~~~~~~ 291 (400)
T Consensus 227 ~~GGP~~G~~a~~~~l~r~lPgrivg~t~D~~G~~~~~ltlqtreqhIrRekatsnict~qal~al~a~~Y~~~lG~~GL 306 (398)
T cd00613 227 GGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGL 306 (398)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 66887443266799877358998565047888874215441354333677752881643278999999999998488638
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCEE
Q ss_conf 2222211000000024553047760330274089
Q gi|254780602|r 292 VNNRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFY 325 (400)
Q Consensus 292 ~~~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y 325 (400)
T Consensus 307 ~~va~~~~~~A~Yl~~~L~~~~~~~~--~~~~~f 338 (398)
T cd00613 307 KEIAERAHLNANYLAKRLKEVGGVLP--FNGPFF 338 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCEE
T ss_conf 89999999999999999986389826--899866